Physical, chemical, and mineralogical data from surficial deposits, groundwater levels, and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada

USGS Publications Warehouse

Goldstein, Harland L.; Breit, George N.; Yount, James C.; Reynolds, Richard L.; Reheis, Marith C.; Skipp, Gary L.; Fisher, Eric M.; Lamothe, Paul J.

2011-01-01

This report presents data and describes the methods used to determine the physical attributes, as well as the chemical and mineralogical composition of surficial deposits; groundwater levels; and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada. The results support studies that examine (1) the interaction between groundwater and the ground surface, and the transport of solutes through the unsaturated zone; (2) the potential for the accumulation of metals and metalloids in surface crusts; (3) emission of dust from metal-rich salt crust; and (4) the effects of metal-rich dusts on human and ecosystem health. The evaporation of shallow (<3 to 4 m) groundwater in saline, arid environments commonly results in the accumulation of salt in the subsurface and (or) the formation of salt crusts at the ground surface. Ground-surface characteristics such as hardness, electrical conductivity, and mineralogy depend on the types and forms of these salt crusts. In the study area, salt crusts range from hard and bedded to soft and loose (Reynolds and others, 2009). Depending on various factors such as the depth and composition of groundwater and sediment characteristics of the unsaturated zone, salt crusts may accumulate relatively high contents of trace elements. Soft, loose salt crusts are highly vulnerable to wind erosion and transport. These vulnerable crusts, which may contain high contents of potentially toxic trace elements, can travel as atmospheric dust and affect human and ecosystem health at local to regional scales.

Phase 1 Environmental Baseline Survey for the Leasing of Nevada Test and Training Range, EC-South Range, Well Site ER-EC-11, for the Underground Test Area Pahute Mesa Phase 2 Drilling and Testing Program Nye County, Nevada

DTIC Science & Technology

2009-05-01

rates are low, ranging from 0.014 to 2.2 liters per second (0.22 to 35 gallons per minute) (IT, 1997; Thordarson and Robinson, 1971). Most water...Area Ash Meadows Discharge Area Oasis Valley Discharge Area 29 fractured volcanic rocks (Winograd and Thordarson , 1975; Laczniak et al., 1996...Vicinity The current understanding of regional groundwater flow at the subject property and adjacent NTS is derived from work by Winograd and Thordarson

Paleohydrology of the southern Great Basin, with special reference to water table fluctuations beneath the Nevada Test Site during the late(?) Pleistocene

USGS Publications Warehouse

Winograd, Isaac Judah; Doty, Gene C.

1980-01-01

Knowledge of the magnitude of water-table rise during Pleistocene pluvial climates, and of the resultant shortening of groundwater flow path and reduction in unsaturated zone thickness, is mandatory for a technical evaluation of the Nevada Test Site (NTS) or other arid zone sites as repositories for high-level or transuranic radioactive wastes. The distribution of calcitic veins filling fractures in alluvium, and of tufa deposits between the Ash Meadows spring discharge area and the Nevada Test Site indicates that discharge from the regional Paleozoic carbonate aquifer during the Late( ) Pleistocene pluvial periods may have occurred at an altitude about 50 meters higher than at present and 14 kilometers northeast of Ash Meadows. Use of the underflow equation (relating discharge to transmissivity, aquifer width, and hydraulic gradient), and various assumptions regarding pluvial recharge, transmissivity, and altitude of groundwater base level, suggest possible rises in potentiometric level in the carbonate aquifer of about -90 meters beneath central Frenchman Flat. During Wisconsin time the rise probably did not exceed 30 meters. Water-level rises beneath Frenchman Flat during future pluvials are unlikely to exceed 30 meters and might even be 10 meters lower than modern levels. Neither the cited rise in potentiometric level in the regional carbonate aquifer, nor the shortened flow path during the Late( ) Pleistocene preclude utilization of the NTS as a repository for high-level or transuranic-element radioactive wastes provided other requisite conditions are met as this site. Deep water tables, attendant thick (up to several hundred meter) unsaturated zones, and long groundwater flow paths characterized the region during the Wisconsin Stage and probably throughout the Pleistocene Epoch and are likely to so characterize it during future glacial periods. (USGS)

Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada

USGS Publications Warehouse

Jezorek, Ian G.; Connolly, Patrick J.; Munz, Carrie S.; Dixon, Chris

2011-01-01

Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedace were known to exist only within this drainage and were known to have been extirpated from a portion of their former habitat located downstream of Condor Canyon. Because of this extirpation and the limited distribution of Big Spring spinedace, the U.S. Fish and Wildlife Service listed this species as threatened under the Endangered Species Act in 1985. Prior to our effort, little was known about Big Spring spinedace populations or life histories and habitat associations. In 2008, personnel from the U.S. Geological Survey's Columbia River Research Laboratory began surveys of Meadow Valley Wash in Condor Canyon. Habitat surveys characterized numerous variables within 13 reaches, thermologgers were deployed at 9 locations to record water temperatures, and fish populations were surveyed at 22 individual sites. Additionally, fish were tagged with Passive Integrated Transponder (PIT) tags, which allowed movement and growth information to be collected on individual fish. The movements of tagged fish were monitored with a combination of recapture events and stationary in-stream antennas, which detected tagged fish. Meadow Valley Wash within Condor Canyon was divided by a 12-meter (m) waterfall known as Delmue Falls. About 6,100 m of stream were surveyed downstream of the falls and about 2,200 m of stream were surveyed upstream of the falls. Although about three-quarters of the surveyed stream length was downstream of Delmue Falls, the highest densities and abundance of native fish were upstream of the falls. Big Spring spinedace and desert sucker populations were highest near the upper end of Condor Canyon, where a tributary known as Kill Wash, and several springs, contribute flow and moderate high and low water temperature. Kill Wash and the area around its confluence with Meadow Valley Wash appeared important for spawning of all three native species. Detections of PIT-tagged fish indicated that there were substantial movements to this area during the spring. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. A population of non-native rainbow trout (Oncorhynchus mykiss) was found within the 2,000 m of stream immediately downstream of Delmue Falls. Non-native crayfish were very common both upstream and downstream of Delmue Falls. We were not able to quantify crayfish populations, but they compose a significant portion of the biomass of aquatic species in Condor Canyon. There were some distinctive habitat features that may have favored native fish upstream of Delmue Falls. Upstream of the falls, water temperatures were moderated by inputs from springs, turbidity was lower, pool habitat was more prevalent, substrate heterogeneity was higher, and there was less fine sediment than

Effects of a coastal golf complex on water quality, periphyton, and seagrass

USGS Publications Warehouse

Lewis, M.A.; Boustany, R.G.; Dantin, D.D.; Quarles, R.L.; Moore, J.C.; Stanley, R.S.

2002-01-01

The objective of this study was to provide baseline information on the effects of a golf course complex on water quality, colonized periphyton, and seagrass meadows in adjacent freshwater, near-coastal, and wetland areas. The chemical and biological impacts of the recreational facility, which uses reclaimed municipal wastewater for irrigation, were limited usually to near-field areas and decreased seaward during the 2-year study. Concentrations of chromium, copper, and organochlorine pesticides were below detection in surface water, whereas mercury, lead, arsenic, and atrazine commonly occurred at all locations. Only mercury and lead exceeded water quality criteria. Concentrations of nutrients and chlorophyll a were greater in fairway ponds and some adjacent coastal areas relative to reference locations and Florida estuaries. Periphyton ash free dry weight and pigment concentrations statistically differed but not between reference and non-reference coastal areas. Biomass of Thalassia testudinum (turtle grass) was approximately 43% less in a meadow located adjacent to the golf complex (P < 0.05). The results of the study suggest that the effects of coastal golf courses on water quality may be primarily localized and limited to peripheral near-coastal areas. However, this preliminary conclusion needs additional supporting data. ?? 2002 Elsevier Science (USA).

A comparative study of prokaryotic diversity and physicochemical characteristics of Devils Hole and the Ash Meadows Fish Conservation Facility, a constructed analog.

PubMed

Sackett, Joshua D; Huerta, Desiree C; Kruger, Brittany R; Hamilton-Brehm, Scott D; Moser, Duane P

2018-01-01

Devils Hole is the sole natural habitat of the critically endangered Devils Hole pupfish (Cyprinodon diabolis). To establish a backup population, the Ash Meadows Fish Conservation Facility (AMFCF), a full-scale replica of the uppermost 6.7 m of Devils Hole, was constructed by management agencies in the mid-2010s. Despite rigorous efforts to mimic the bathymetric and physical details of the Devils Hole environment, the biogeochemistry and microbiology of the AMFCF refuge tank remain largely unaddressed. We evaluated water physicochemistry and employed Illumina DNA sequencing of 16S rRNA gene libraries to evaluate planktonic and benthic bacterial and archaeal community composition within their respective physicochemical contexts in Devils Hole and AMFCF on the same day. Major ion concentrations were consistent between the two systems, but water temperature and dissolved oxygen dynamics differed. Bioavailable nitrogen (primarily nitrate) was 5x lower in AMFCF. Devils Hole and AMFCF nitrogen:phosphorus molar ratios were 107:1 and 22:1, indicative of different nutrient control mechanisms. Both sites are microbiologically diverse, with over 40 prokaryotic phyla represented at each, with 37 shared between them and nearly than half deriving from candidate divisions. The abundance and composition of predicted photosynthetic primary producers (Cyanobacteria) was markedly different between sites: Devils Hole planktonic and sediment communities were dominated by Oscillatoria spp. (13.2% mean relative abundance), which proved virtually undetectable in AMFCF. Conversely, AMFCF was dominated by a predicted heterotroph from the Verrucomicrobiaceae family (31.7%); which was comparatively rare (<2.4%) in Devils Hole. We propose that the paucity of bioavailable nitrogen in AMFCF, perhaps resulting from physical isolation from allochthonous environmental inputs, is reflected in the microbial assemblage disparity, influences biogeochemical cycling of other dissolved constituents, and may ultimately impact survivorship and recruitment of refuge populations of the Devils Hole pupfish.

A comparative study of prokaryotic diversity and physicochemical characteristics of Devils Hole and the Ash Meadows Fish Conservation Facility, a constructed analog

PubMed Central

Huerta, Desiree C.; Kruger, Brittany R.; Hamilton-Brehm, Scott D.; Moser, Duane P.

2018-01-01

Devils Hole is the sole natural habitat of the critically endangered Devils Hole pupfish (Cyprinodon diabolis). To establish a backup population, the Ash Meadows Fish Conservation Facility (AMFCF), a full-scale replica of the uppermost 6.7 m of Devils Hole, was constructed by management agencies in the mid-2010s. Despite rigorous efforts to mimic the bathymetric and physical details of the Devils Hole environment, the biogeochemistry and microbiology of the AMFCF refuge tank remain largely unaddressed. We evaluated water physicochemistry and employed Illumina DNA sequencing of 16S rRNA gene libraries to evaluate planktonic and benthic bacterial and archaeal community composition within their respective physicochemical contexts in Devils Hole and AMFCF on the same day. Major ion concentrations were consistent between the two systems, but water temperature and dissolved oxygen dynamics differed. Bioavailable nitrogen (primarily nitrate) was 5x lower in AMFCF. Devils Hole and AMFCF nitrogen:phosphorus molar ratios were 107:1 and 22:1, indicative of different nutrient control mechanisms. Both sites are microbiologically diverse, with over 40 prokaryotic phyla represented at each, with 37 shared between them and nearly than half deriving from candidate divisions. The abundance and composition of predicted photosynthetic primary producers (Cyanobacteria) was markedly different between sites: Devils Hole planktonic and sediment communities were dominated by Oscillatoria spp. (13.2% mean relative abundance), which proved virtually undetectable in AMFCF. Conversely, AMFCF was dominated by a predicted heterotroph from the Verrucomicrobiaceae family (31.7%); which was comparatively rare (<2.4%) in Devils Hole. We propose that the paucity of bioavailable nitrogen in AMFCF, perhaps resulting from physical isolation from allochthonous environmental inputs, is reflected in the microbial assemblage disparity, influences biogeochemical cycling of other dissolved constituents, and may ultimately impact survivorship and recruitment of refuge populations of the Devils Hole pupfish. PMID:29543879

Propagation of hybrid Devils Hole Pupfish × Ash Meadows Amargosa Pupfish

USGS Publications Warehouse

Feuerbacher, Olin; Mapula, Justin A.; Bonar, Scott A.

2015-01-01

Recent censuses of Devils Hole Pupfish Cyprinodon diabolis revealed that fewer than 100 individuals currently remain in the wild. Captive propagation is among actions being considered to prevent their extinction, but no pure-strain Devils Hole Pupfish were available for broodstock. To help provide emergency information, we investigated techniques to propagate their most closely related relative, hybrid Devils Hole Pupfish C. diabolis× Ash Meadows Amargosa Pupfish C. nevadensis mionectes. We tested various temperatures and larval feeds with respect to egg production, larval survival, and growth. Larval survival and growth were similar from 24°C to 32°C and egg production peaked at static 28°C; however, reducing water temperatures to 23°C and then raising them to 28°C resulted in even higher production. Larvae fed infusoria, Rio Grande Silvery Minnow Chow (RGSM), or Zeigler larval diet (ZLD) had the highest survival (79.4, 71.6, and 73.4%, respectively), and those fed Otohime (OTO) had the lowest survival (60.8%), although OTO provided greatest (14 mm) 30-d growth. Supplementation of RGSM or ZLD with Artemia nauplii increased growth but decreased survival. Larval production was maximized by placing six spawning mops, constructed of yarn and tile, in each of four 437-L parental aquaria, stocked with 24 adult fish each (1:1 sex ratio) for 3 d, to attract adults and provide spawning substrate. A 30% water change conducted on the same day of mop placement lowered water temperature from 28°C to 23°C. Water temperature was raised back to 28°C over 48 h. After 3 d, mops were transferred to hatching aquaria that were held at 28°C and aerated until larval hatch. Although some differences likely exist in effective propagation techniques for hybrid and pure-strain Devils Hole Pupfish, these data help provide initial recommendations to aid recovery.

Estimating Coextinction Risks from Epidemic Tree Death: Affiliate Lichen Communities among Diseased Host Tree Populations of Fraxinus excelsior

PubMed Central

Jönsson, Mari T.; Thor, Göran

2012-01-01

At least 10% of the world’s tree species are threatened with extinction and pathogens are increasingly implicated in tree threats. Coextinction and threats to affiliates as a consequence of the loss or decline of their host trees is a poorly understood phenomenon. Ash dieback is an emerging infectious disease causing severe dieback of common ash Fraxinus excelsior throughout Europe. We utilized available empirical data on affiliate epiphytic lichen diversity (174 species and 17,800 observations) among 20 ash dieback infected host tree populations of F. excelsior on the island Gotland in the Baltic Sea, Sweden. From this, we used structured scenario projections scaled with empirical data of ash dieback disease to generate probabilistic models for estimating local and regional lichen coextinction risks. Average coextinction probabilities (Ā) were 0.38 (95% CI ±0.09) for lichens occurring on F. excelsior and 0.14 (95% CI ±0.03) when considering lichen persistence on all tree species. Ā was strongly linked to local disease incidence levels and generally increasing with lichen host specificity to F. excelsior and decreasing population size. Coextinctions reduced affiliate community viability, with significant local reductions in species richness and shifts in lichen species composition. Affiliates were projected to become locally extirpated before their hosts, illuminating the need to also consider host tree declines. Traditionally managed open wooded meadows had the highest incidence of ash dieback disease and significantly higher proportions of affiliate species projected to go extinct, compared with unmanaged closed forests and semi-open grazed sites. Most cothreatened species were not previously red-listed, which suggest that tree epidemics cause many unforeseen threats to species. Our analysis shows that epidemic tree deaths represent an insidious, mostly overlooked, threat to sessile affiliate communities in forested environments. Current conservation and management strategies must account for secondary extinctions associated with epidemic tree death. PMID:23049840

The microbially mediated soil organic carbon loss under degenerative succession in an alpine meadow.

PubMed

Zhang, Yuguang; Liu, Xiao; Cong, Jing; Lu, Hui; Sheng, Yuyu; Wang, Xiulei; Li, Diqiang; Liu, Xueduan; Yin, Huaqun; Zhou, Jizhong; Deng, Ye

2017-07-01

Land-cover change has long been recognized as having marked effect on the amount of soil organic carbon (SOC). However, the microbially mediated processes and mechanisms on SOC are still unclear. In this study, the soil samples in a degenerative succession from alpine meadow to alpine steppe meadow in the Qinghai-Tibetan Plateau were analysed using high-throughput technologies, including Illumina sequencing and geochip functional gene arrays. The soil microbial community structure and diversity were significantly (p < .05) different between alpine meadow and alpine steppe meadow; the microbial ɑ-diversity in alpine steppe meadow was significantly (p < .01) higher than in alpine meadow. Molecular ecological network analysis indicated that the microbial community structure in alpine steppe meadow was more complex and tighter than in the alpine meadow. The relative abundance of soil microbial labile carbon degradation genes (e.g., pectin and hemicellulose) was significantly higher in alpine steppe meadow than in alpine meadow, but the relative abundance of soil recalcitrant carbon degradation genes (e.g., chitin and lignin) showed the opposite tendency. The Biolog Ecoplate experiment showed that microbially mediated soil carbon utilization was more active in alpine steppe meadow than in alpine meadow. Consequently, more soil labile carbon might be decomposed in alpine steppe meadow than in alpine meadow. Therefore, the degenerative succession of alpine meadow because of climate change or anthropogenic activities would most likely decrease SOC and nutrients medicated by changing soil microbial community structure and their functional potentials for carbon decomposition. © 2017 John Wiley & Sons Ltd.

Correcting speckle contrast at small speckle size to enhance signal to noise ratio for laser speckle contrast imaging.

PubMed

Qiu, Jianjun; Li, Yangyang; Huang, Qin; Wang, Yang; Li, Pengcheng

2013-11-18

In laser speckle contrast imaging, it was usually suggested that speckle size should exceed two camera pixels to eliminate the spatial averaging effect. In this work, we show the benefit of enhancing signal to noise ratio by correcting the speckle contrast at small speckle size. Through simulations and experiments, we demonstrated that local speckle contrast, even at speckle size much smaller than one pixel size, can be corrected through dividing the original speckle contrast by the static speckle contrast. Moreover, we show a 50% higher signal to noise ratio of the speckle contrast image at speckle size below 0.5 pixel size than that at speckle size of two pixels. These results indicate the possibility of selecting a relatively large aperture to simultaneously ensure sufficient light intensity and high accuracy and signal to noise ratio, making the laser speckle contrast imaging more flexible.

Montane meadow evapotranspiration: implications for restoration and impacts on downstream flow.

NASA Astrophysics Data System (ADS)

Lucas, R. G.; Conklin, M. H.; Goulden, M.

2015-12-01

Meadows comprise less than 1 percent of the area in the Sierra Nevada Mountains, CA, but play an important role in hydrologic processes of Sierra catchments. This study constrains meadow evapotranspiration (ET) and places meadow ET in the context of the greater watershed ET. Meadows in the Sierra Nevada range from pristine to restored to degraded—decades of stock grazing, road building, and logging, have left incised stream channels and lowered water tables in many meadow s. The State of California has prioritized meadow restoration; these efforts are motivated, at least in part, as a means to increase groundwater storage (California Water Action Plan; 2014). Information on how restoration affects meadow and catchment hydrology and ET is lacking. We combined eddy covariance measurements (2013 and 2014) and meteorological records (2008 to 2014) with an Artificial Neural Network to quantify meadow ET over a 7 year period. We focused on Long Meadow, which is a pristine meadow located at 2210 m in Sequoia National Park, CA. ET was highest in drought years 2012-2014 (532 mm in 2013) and lowest in a particularly wet year (470 mm), 2011. This trend is opposite that observed for nearby upland Sierra Nevada forest by the SSCZO eddy flux stations, where annual ET declined from wet to dry years. Meadow ET was generally lower and less variable than forest ET. Long Meadow ET is 25-50% greater than ET rates reported in systems similar to degraded meadows such as bitterbrush/sagebrush dominated areas (Mauer et al.; 2006); this ET discrepancy is consistent with previous studies that suggest healthy meadow ET can be 25-50% more than ET in a degraded meadow s (Hammersmark et al.; 2008). Because meadows are a small fraction of the land area, however, restoring meadows to healthy conditions results in only a small increase in ET in the greater watershed. Restoring a meadow similar in size (~4.6 hectares) and associated catchment size (~140 hectares) to Long Meadow from a degraded to a healthy system, for example, would increase the associated catchment ET by only 0.03-0.05%. We conclude that when evaluating the ET effect of a meadow restoration, it needs to be done in context of the whole catchment.

Water-table decline in the south-central Great Basin during the Quaternary Period; implications for toxic-waste disposal

USGS Publications Warehouse

Winograd, I.J.; Szabo, B. J.

1986-01-01

The distribution of vein calcite, tufa, and other features indicative of paleo-groundwater discharge, indicates that during the early to middle Pleistocene, the water table at Ash Meadows, in the Amargosa Desert, Nevada, and at Furnace Creek Wash, in east-central Death Valley, California, was tens to hundreds of meters above the modern water table, and that groundwater discharge occurred up to 18 km up-the-hydraulic gradient from modern discharge areas. Uranium series dating of the calcitic veins permits calculation of rates of apparent water table decline; rates of 0.02 to 0.08 m/1000 yr are indicated for Ash meadows and 0.2 to 0.6 m/1000 yr for Furnace Creek Wash. The rates for Furnace Creek Wash closely match a published estimate of vertical crustal offset for this area, suggesting that tectonism is a major cause for the displacement observed. In general, displacements of the paleo-water table probably reflect a combination of: (a) tectonic uplift of vein calcite and tufa, unaccompanied by a change in water table altitude; (b) decline in water table altitude in response to tectonic depression of areas adjacent to dated veins and associated tufa; (c) decline in water table altitude in response to increasing aridity caused by major uplift of the Sierra Nevada and Transverse Ranges during the Quaternary; and (d) decline in water altitude in response to erosion triggered by increasing aridity and/or tectonism. A synthesis of geohydrologic, neotectonic, and paleoclimatologic information with the vein-calcite data permits the inference that the water table in the south-central Great Basin progressively lowered throughout the Quaternary. This inference is pertinent to an evaluation of the utility of thick (200-600 m) unsaturated zones of the region for isolating solidified radioactive wastes from the hydrosphere for hundreds of millenia. Wastes buried a few tens to perhaps 100 m above the modern water table--that is above possible water level rises due to future pluvial climates--are unlikely to be inundated by a rising water table in the foreseeable geologic future. (Author 's abstract)

Tracing potential soil contamination in the historical Solvay soda ash plant area, Jaworzno, Southern Poland.

PubMed

Sutkowska, Katarzyna; Teper, Leslaw; Stania, Monika

2015-11-01

This study of soil conditions was carried out on 30 meadow soil (podzol) samples from the vicinity of the soda ash heap in Jaworzno, supplemented by analyses of 18 samples of waste deposited on the heap. In all samples, the total content of macroelements (Ca and Na) and heavy metals (Cd, Cr, Ni, Pb and Zn) as well as pH were analysed. The element concentrations were measured using inductively coupled plasma optical emission spectrometry (ICP-OES). The materials examined were neutral to ultra-alkaline. Total accumulations (mg kg(-1)) of chemical elements in the soil vary from 130.24 to 14076.67 for Ca, 41.40-926.23 for Na, 0.03-3.34 for Cd, 0.94-103.62 for Cr, 0.94-35.89 for Ni, 3.51-76.47 for Pb and 12.05-279.13 for Zn, whereas quantities of the same elements in the waste samples vary from 171705.13 to 360487.94 for Ca, 517.64-3152.82 for Na, 0.2-9.89 for Cd, 1.16-20.40 for Cr, 1.08-9.79 for Ni, 0.1-146.05 for Pb and 10.26-552.35 for Zn. The vertical distribution of the metals was determined in each soil profile. Despite enrichment of heavy metals in the uppermost horizon on the top of the heap, the results lead to the conclusion that the relation of historical production of soda ash in Jaworzno to current contamination of the local soil environment is insignificant.

Watershed-scale modeling of streamflow change in incised montane meadows

USGS Publications Warehouse

Essaid, Hedeff I.; Hill, Barry R.

2014-01-01

Land use practices have caused stream channel incision and water table decline in many montane meadows of the Western United States. Incision changes the magnitude and timing of streamflow in water supply source watersheds, a concern to resource managers and downstream water users. The hydrology of montane meadows under natural and incised conditions was investigated using watershed simulation for a range of hydrologic conditions. The results illustrate the interdependence between: watershed and meadow hydrology; bedrock and meadow aquifers; and surface and groundwater flow through the meadow for the modeled scenarios. During the wet season, stream incision resulted in less overland flow and interflow and more meadow recharge causing a net decrease in streamflow and increase in groundwater storage relative to natural meadow conditions. During the dry season, incision resulted in less meadow evapotranspiration and more groundwater discharge to the stream causing a net increase in streamflow and a decrease in groundwater storage relative to natural meadow conditions. In general, for a given meadow setting, the magnitude of change in summer streamflow and long-term change in watershed groundwater storage due to incision will depend on the combined effect of: reduced evapotranspiration in the eroded meadow; induced groundwater recharge; replenishment of dry season groundwater storage depletion in meadow and bedrock aquifers by precipitation during wet years; and groundwater storage depletion that is not replenished by precipitation during wet years.

Speckle suppression by doubly scattering systems.

PubMed

Li, Dayan; Kelly, Damien P; Sheridan, John T

2013-12-10

Speckle suppression in a two-diffuser system is examined. An analytical expression for the speckle space-time correlation function is derived, so that the speckle suppression mechanism can be investigated statistically. The grain size of the speckle field illuminating the second diffuser has a major impact on the speckle contrast after temporal averaging. It is shown that, when both the diffusers are rotating, the one with the lower rotating speed determines the period of the speckle correlation function. The coherent length of the averaged speckle intensity is shown to equal the mean speckle size of the individual speckle pattern before averaging. Numerical and experimental results are presented to verify our analysis in the context of speckle reduction.

Wet meadows

Treesearch

Jonathan W. Long; Karen Pope

2014-01-01

Wet meadows help to sustain favorable water flows, biological diversity, and other values; consequently, restoration of degraded wet meadows is an important part of a strategy for promoting socioecological resilience. This chapter focuses on high-elevation wet meadows that are associated with streams; thus restoration of such meadows may be considered a subset of...

Continuous 1985-2012 Landsat monitoring to assess fire effects on meadows in Yosemite National Park, California

USGS Publications Warehouse

Soulard, Christopher E.; Albano, Christine M.; Villarreal, Miguel; Walker, Jessica

2016-01-01

To assess how montane meadow vegetation recovered after a wildfire that occurred in Yosemite National Park, CA in 1996, Google Earth Engine image processing was applied to leverage the entire Landsat Thematic Mapper archive from 1985 to 2012. Vegetation greenness (normalized difference vegetation index [NDVI]) was summarized every 16 days across the 28-year Landsat time series for 26 meadows. Disturbance event detection was hindered by the subtle influence of low-severity fire on meadow vegetation. A hard break (August 1996) was identified corresponding to the Ackerson Fire, and monthly composites were used to compare NDVI values and NDVI trends within burned and unburned meadows before, immediately after, and continuously for more than a decade following the fire date. Results indicate that NDVI values were significantly lower at 95% confidence level for burned meadows following the fire date, yet not significantly lower at 95% confidence level in the unburned meadows. Burned meadows continued to exhibit lower monthly NDVI in the dormant season through 2012. Over the entire monitoring period, the negative-trending, dormant season NDVI slopes in the burned meadows were also significantly lower than unburned meadows at 90% confidence level. Lower than average NDVI values and slopes in the dormant season compared to unburned meadows, coupled with photographic evidence, strongly suggest that evergreen vegetation was removed from the periphery of some meadows after the fire. These analyses provide insight into how satellite imagery can be used to monitor low-severity fire effects on meadow vegetation.

A multi-scale evaluation of pack stock effects on subalpine meadow plant communities in the Sierra Nevada

USGS Publications Warehouse

Lee, Steven R.; Berlow, Eric L.; Ostoja, Steven M.; Brooks, Matthew L.; Génin, Alexandre; Matchett, John R.; Hart, Stephen C.

2017-01-01

We evaluated the influence of pack stock (i.e., horse and mule) use on meadow plant communities in Sequoia and Yosemite National Parks in the Sierra Nevada of California. Meadows were sampled to account for inherent variability across multiple scales by: 1) controlling for among-meadow variability by using remotely sensed hydro-climatic and geospatial data to pair stock use meadows with similar non-stock (reference) sites, 2) accounting for within-meadow variation in the local hydrology using in-situ soil moisture readings, and 3) incorporating variation in stock use intensity by sampling across the entire available gradient of pack stock use. Increased cover of bare ground was detected only within “dry” meadow areas at the two most heavily used pack stock meadows (maximum animals per night per hectare). There was no difference in plant community composition for any level of soil moisture or pack stock use. Increased local-scale spatial variability in plant community composition (species dispersion) was detected in “wet” meadow areas at the two most heavily used meadows. These results suggest that at the meadow scale, plant communities are generally resistant to the contemporary levels of recreational pack stock use. However, finer-scale within-meadow responses such as increased bare ground or spatial variability in the plant community can be a function of local-scale hydrological conditions. Wilderness managers can improve monitoring of disturbance in Sierra Nevada meadows by adopting multiple plant community indices while simultaneously considering local moisture regimes.

Spatial Variability of Soil Water and Soil Organic Carbon Contents Under Different Degradation Degrees of Alpine Meadow Soil over the Qinghai-Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zeng, C.; Zhang, F.

2014-12-01

Alpine meadow is one of widespread vegetation types of the Qinghai-Tibetan Plateau. However, alpine meadow ecosystem is undergoing degradation in recent years. The degradation of alpine meadow can changes soil physical and chemical properties as well as it's spatial variability. However, little research has been done that address the spatial patterns of soil properties under different degradation degrees of alpine meadow of the Qinghai-Tibetan Plateau although these changes were important to water and heat study and modelling of land surface. 296 soil surface (0-10 cm) samples were collected using grid sampling design from three different degraded alpine meadow regions (1 km2). Then soil water content (SWC) and organic carbon content (OCC) were measured. Classical statistical and geostatistical methods were employed to study the spatial heterogeneities of SWC and OCC under different degradation degrees (Non-degraded ND, moderately degraded MD, extremely degraded ED) of alpine meadow. Results show that both SWC and OCC of alpine meadow were normally distributed with the exception of SWC under ED. On average, both SWC and OCC of alpine meadow decreased in the order that ND > MD > ED. For nugget ratios, SWC and OCC of alpine meadow showed increasing spatial dependence tendency from ND to ED. For the range of spatial variation, both SWC and OCC of alpine meadow showed increasing tendency in distance with the increasing degree of degradation. In all, the degradation of alpine meadow has significant impact on spatial heterogeneities of SWC and OCC of alpine meadow. With increasing of alpine meadow degradation, soil water condition and nutrient condition become worse, and their distributions in spatial become unevenly.

Suppression of Speckles at High Adaptive Correction Using Speckle Symmetry

NASA Technical Reports Server (NTRS)

Bloemhof, Eric E.

2006-01-01

Focal-plane speckles set important sensitivity limits on ground- or space-based imagers and coronagraphs that may be used to search for faint companions, perhaps ultimately including exoplanets, around stars. As speckles vary with atmospheric fluctuations or with drifting beamtrain aberrations, they contribute speckle noise proportional to their full amplitude. Schemes to suppress speckles are thus of great interest. At high adaptive correction, speckles organize into species, represented by algebraic terms in the expansion of the phase exponential, that have distinct spatial symmetry, even or odd, under spatial inversion. Filtering speckle patterns by symmetry may eliminate a disproportionate fraction of the speckle noise while blocking (only) half of the image signal from the off-axis companion being sought. The fraction of speckle power and hence of speckle noise in each term will vary with degree of correction, and so also will the net symmetry in the speckle pattern.

Response of Vegetation Greenness to Climate Change in Meadows of the Sierra Nevada Mountains

NASA Astrophysics Data System (ADS)

von Kaenel, M.

2016-12-01

Wet meadows in the Sierra Nevada Mountain Range provide crucial ecological and hydrological services such as groundwater recharge and habitat to both wildlife and human communities, yet they are one of the most at-risk landscapes of the Sierra Nevada, with 40-60% of meadows impacted by degradation. These meadows also face the threat of global climate warming, which will bring earlier snowmelt and a greater proportion of precipitation as rain rather than snow in the Sierra Nevada, leading to shifts in the hydrology that governs meadow health and function. To assess the vulnerability of meadows to potential climate-driven degradation, this research relied on remote sensing to track maximum annual vegetation greenness as an indicator for vegetation health and consequentially meadow function in 2,512 Sierra Nevada meadows from 1989 to 2015, and correlated these fluctuations with changes in local climate. Peak snow water content, April 1st snowpack depth, and total annual precipitation are all positively correlated with maximum meadow greenness, with precipitation being the best predictor of greenness. The extent to which meadow greenness varies with changes in climate differs significantly across elevation, latitude, vegetation type, and dominant rock type. Based on data-derived sensitivities, I conclude that restoration should be prioritized in grassland meadows and meadows at high elevations, due to their high vulnerability to changes in climate and a high risk of global warming induced hydrological shifts.

Meadows in the Sierra Nevada of California: state of knowledge

Treesearch

Raymond D. Ratliff

1985-01-01

This state-of-knowledge report summarizes the best available information on maintenance, restoration, and management of meadows of the Sierra Nevada, California. Major topics discussed include how to classify meadows, meadow soils, productivity of meadows, management problems, and how to evaluate range conditions and trends. Current methods and standards are reviewed,...

Physicochemical properties and carbon density of alpine sod layer with their variation across habitat gradients in the Zoige Plateau

NASA Astrophysics Data System (ADS)

Peixi, Su; Zijuan, Zhou; Rui, Shi; tingting, Xie

2017-04-01

The alpine sod layer is a soft, tough and resistant to shifting surface soil layer under the formation of the natural vegetation in the plateau cold region, understanding its ecological function is a prerequisite to promote grass and animal husbandry production for recuperation and protection, and the active use of project construction. Based on the extensive investigation on the alpine vegetation of the Zoige Plateau in the Eastern Qinghai-Tibetan Plateau of China, set up moisture gradient community sample plots: swamp, degraded swamp, swampy meadow, wet meadow, dry meadow and degraded meadow, and the elevation gradient community sample plots: subalpine meadow, subalpine shrub meadow, alpine shrub meadow and alpine meadow were set up. The sod layer bulk density, soil particle composition and soil organic carbon (SOC) content of different types of community plots were analyzed and to compare its carbon sequestration capacity on the moisture and elevation gradients. The results showed that the average thickness of the sod layer was 30 cm, the bulk density of the swamp was the smallest, and the SOC content was above 300 g/kg. The bulk density of degraded meadow was the highest while its SOC content was decreased significantly. The SOC density of sod layer in different communities was between 10 and 24 kg C/m2, and decreased with the decreasing of soil water availability, and meadow degradation significantly decreased the soil organic carbon storage in sod layer. The sod layer SOC density of alpine shrub meadow was 15% higher than that of meadow on the altitudinal gradient. It was concluded that the mass water content threshold value for maintaining the sod layer stable is 30%. In the degraded succession of alpine vegetation from swamp to meadow, the bulk density and compactness of sod layer became larger, while the organic carbon content, carbon density and carbon storage decreased. The higher the gravel content of swamp, the more easily degraded, and the higher the sand content of the meadow, the more easily degraded. Shrub meadow had higher carbon sequestration capacity than that of meadow, but the productive function of shrub meadow was lower. Keeping the sustainable development of grassland productivity and maintaining the carbon sequestration ecological function, it is necessary to prevent the degradation of the sod layer, and restrain the succession from meadow to scrub meadow. Key Words: surface soil layer, soil organic carbon, carbon density, alpine vegetation, Zoige Plateau

A multi-scale evaluation of pack stock effects on subalpine meadow plant communities in the Sierra Nevada

PubMed Central

Berlow, Eric L.; Ostoja, Steven M.; Brooks, Matthew L.; Génin, Alexandre; Matchett, John R.; Hart, Stephen C.

2017-01-01

We evaluated the influence of pack stock (i.e., horse and mule) use on meadow plant communities in Sequoia and Yosemite National Parks in the Sierra Nevada of California. Meadows were sampled to account for inherent variability across multiple scales by: 1) controlling for among-meadow variability by using remotely sensed hydro-climatic and geospatial data to pair stock use meadows with similar non-stock (reference) sites, 2) accounting for within-meadow variation in the local hydrology using in-situ soil moisture readings, and 3) incorporating variation in stock use intensity by sampling across the entire available gradient of pack stock use. Increased cover of bare ground was detected only within “dry” meadow areas at the two most heavily used pack stock meadows (maximum animals per night per hectare). There was no difference in plant community composition for any level of soil moisture or pack stock use. Increased local-scale spatial variability in plant community composition (species dispersion) was detected in “wet” meadow areas at the two most heavily used meadows. These results suggest that at the meadow scale, plant communities are generally resistant to the contemporary levels of recreational pack stock use. However, finer-scale within-meadow responses such as increased bare ground or spatial variability in the plant community can be a function of local-scale hydrological conditions. Wilderness managers can improve monitoring of disturbance in Sierra Nevada meadows by adopting multiple plant community indices while simultaneously considering local moisture regimes. PMID:28609464

75 FR 70230 - Combined Notice of Filings #1

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-17

... Numbers: ER10-2411-001. Applicants: Meadow Lake Wind Farm III LLC. Description: Meadow Lake Wind Farm III...: ER10-2412-001. Applicants: Meadow Lake Wind Farm IV LLC. Description: Meadow Lake Wind Farm IV LLC submits tariff filing per 35: Meadow Lake Wind Farm IV LLC MBR Tariff to be effective 8/26/2010. Filed...

Speckle perception and disturbance limit in laser based projectors

NASA Astrophysics Data System (ADS)

Verschaffelt, Guy; Roelandt, Stijn; Meuret, Youri; Van den Broeck, Wendy; Kilpi, Katriina; Lievens, Bram; Jacobs, An; Janssens, Peter; Thienpont, Hugo

2016-04-01

We investigate the level of speckle that can be tolerated in a laser cinema projector. For this purpose, we equipped a movie theatre room with a prototype laser projector. A group of 186 participants was gathered to evaluate the speckle perception of several, short movie trailers in a subjective `Quality of Experience' experiment. This study is important as the introduction of lasers in projection systems has been hampered by the presence of speckle in projected images. We identify a speckle disturbance threshold by statistically analyzing the observers' responses for different values of the amount of speckle, which was monitored using a well-defined speckle measurement method. The analysis shows that the speckle perception of a human observer is not only dependent on the objectively measured amount of speckle, but it is also strongly influenced by the image content. As is also discussed in [Verschaffelt et al., Scientific Reports 5, art. nr. 14105, 2015] we find that, for moving images, the speckle becomes disturbing if the speckle contrast becomes larger than 6.9% for the red, 6.0% for the green, and 4.8% for the blue primary colors of the projector, whereas for still images the speckle detection threshold is about 3%. As we could not independently tune the speckle contrast of each of the primary colors, this speckle disturbance limit seems to be determined by the 6.9% speckle contrast of the red color as this primary color contains the largest amount of speckle. The speckle disturbance limit for movies thus turns out to be substantially larger than that for still images, and hence is easier to attain.

Human speckle perception threshold for still images from a laser projection system.

PubMed

Roelandt, Stijn; Meuret, Youri; Jacobs, An; Willaert, Koen; Janssens, Peter; Thienpont, Hugo; Verschaffelt, Guy

2014-10-06

We study the perception of speckle by human observers in a laser projector based on a 40 persons survey. The speckle contrast is first objectively measured making use of a well-defined speckle measurement method. We statistically analyse the results of the user quality scores, revealing that the speckle perception is not only influenced by the speckle contrast settings of the projector, but it is also strongly influenced by the type of image shown. Based on the survey, we derive a speckle contrast threshold for which speckle can be seen, and separately we investigate a speckle disturbance limit that is tolerated by the majority of test persons.

Detecting Montane Meadows in the Tahoe National Forest Using LiDAR and ASTER Imagery

NASA Astrophysics Data System (ADS)

Lorenz, A.; Blesius, L.; Davis, J. D.

2016-12-01

In the Sierra Nevada mountains, meadows provide numerous hydraulic and ecosystem functions such as flood attenuation, groundwater storage, and wildlife habitat. However, many meadows have been degraded from historical land use such as water diversion, grazing, and logging. Land managers have altered management strategies for restoration purposes, but there is a lack of comprehensive data on meadow locations. Previous attempts to inventory Sierra Nevada meadows have included several remote sensing techniques including heads up digitizing and pixel based image analysis, but this has been challenging due to geographic variability, seasonal changes, and meadow health. I present a remote sensing method using multiple return LiDAR (Light Detection and Ranging) and ASTER imagery to detect montane meadows in a subset of the Tahoe National Forest. The project used LiDAR data to create a digital terrain model and digital surface model. From these models, I derived canopy height, surface slope, and watercourse for the entire study area. Literature queries returned known values for canopy height and surface slope characteristic of montane meadows. These values were used to select for possible meadows within the study area. To filter out noise, only contiguous areas greater than one acre that satisfied the queries were used. Finally, 15-meter ASTER imagery was used to de-select for areas such as dirt patches or gravel bars that might have satisfied the previous queries and meadow criteria. When using high resolution aerial imagery to assess model accuracy, preliminary results show user accuracy of greater than 80%. Further validation is still needed to improve the accuracy of modeled meadow delineation. This method allows for meadows to be inventoried without discriminating based on geographic variability, seasonal changes, or meadow health.

Analysis of statistical properties of laser speckles, forming in skin and mucous of colon: potential application in laser surgery

NASA Astrophysics Data System (ADS)

Rubtsov, Vladimir; Kapralov, Sergey; Chalyk, Iuri; Ulianova, Onega; Ulyanov, Sergey

2013-02-01

Statistical properties of laser speckles, formed in skin and mucous of colon have been analyzed and compared. It has been demonstrated that first and second order statistics of "skin" speckles and "mucous" speckles are quite different. It is shown that speckles, formed in mucous, are not Gaussian one. Layered structure of colon mucous causes formation of speckled biospeckles. First- and second- order statistics of speckled speckles have been reviewed in this paper. Statistical properties of Fresnel and Fraunhofer doubly scattered and cascade speckles are described. Non-gaussian statistics of biospeckles may lead to high localization of intensity of coherent light in human tissue during the laser surgery. Way of suppression of highly localized non-gaussian speckles is suggested.

Mountain Meadows and their contribution to Sierra Nevada Water Resources

NASA Astrophysics Data System (ADS)

Cornwell, K.; Brown, K.; Monohan, C.

2007-12-01

Human alterations of California's waterscape have exploited rivers, wetlands and meadows of the Sierra Nevada. A century of intensive logging, mining, railroad building, development, fire suppression, and grazing by sheep and cattle has left only 25 percent "intact" natural habitat in the Sierra Nevada (SNEP 1995). Much of this intact habitat occurs at higher elevations, often in non-forested alpine or in less productive forests and woodlands where mountain meadows exist. Mountain meadows serve many ecological functions including habitat for threatened and endangered terrestrial and aquatic species, and are considered to be essential physical components to watershed function and hydrology with significant water storage, filtration and flood attenuation properties. This study evaluates the physical characteristics and hydrologic function of Clarks Meadow located in northern Sierra Nevada, Plumas County, California. In 2001, Clarks Meadow received significant restoration work in the upstream half of the meadow which diverted the stream from an incised channel to a shallow remnant channel, creating a stable channel and reconnecting the groundwater table to the stream. No restoration work was done in the lower half of Clarks Meadow where the stream still flows through an incised channel. Clarks Meadow offers a unique opportunity to study both a restored, hydrologically functional meadow and an incised, hydrologically disconnected stretch of the same stream and meadow. The physical characteristics of Clarks Meadows that were measured include surface area, subsurface thickness, porosity and permeability of subsurface materials, potential water storage volume, and surface infiltration rates. The goal of this study is to refine hydrologic characterization methods, quantify water storage potential of a healthy, non-incised meadow and assess its role in attenuating flood flows during high discharge times. Initial results suggest that significant subsurface storage volume is available in the meadow. Incising conditions in the unstable lower channel tends to dewater the lower portion of the meadow which encourages bank erosion through piping and corrasion. This study addresses questions that have broad implications for water management throughout the state because much of California gets water from Sierra high elevation watersheds in which meadows are thought to play a critical role in sustained long-term hydrologic function. The results of this study will be used to inform Integrated Regional Water Management Plans throughout Northern California.

Speckle reduction using deformable mirrors with diffusers in a laser pico-projector.

PubMed

Chen, Hsuan-An; Pan, Jui-Wen; Yang, Zu-Po

2017-07-24

We propose a design for speckle reduction in a laser pico-projector adopting diffusers and deformable mirrors. This research focuses on speckle noise suppression by changing the angle of divergence of the diffuser. Moreover, the speckle contrast value can be further reduced by the addition of a deformable mirror. The speckle reduction ability obtained using diffusers with different divergence angles is compared. Three types of diffuser designs are compared in the experiments. For Type 1 which uses a circular symmetric diffuser the speckle contrast value can be decreased to 0.0264. For Type 2, the speckle contrast value can be reduced to 0.0267 because of the inclusion of an elliptical distribution diffuser. With Type 3 which includes a combination of the circular distribution diffuser and elliptical distribution diffuser, the speckle contrast value can be reduced to 0.0236. For all three types, the speckle contrast value is lower than 0.05. Under this speckle value, the speckle phenomenon is invisible to the human eye.

Speckle measuring instrument based on biological characteristics of the human eyes and speckle reduction with advanced electromagnetic micro-scanning mirror

NASA Astrophysics Data System (ADS)

Yuan, Yuan; Fang, Tao; Sun, Min Yuan; Gao, Wei Nan; Zhang, Shuo; Bi, Yong

2018-07-01

Laser speckle is a major issue for laser projection displays. In various techniques of speckle reduction, speckle is quantified with a speckle contrast value. However, the measured speckle contrast is poorly suited for the subjective speckle perception of a human observer. Here, we investigate the characteristics of human eyes and propose a simplified optical transfer function of human eyes. Accordingly, two human-eye-modeled speckle measuring sets are configured. Based on the experimental set, an advanced electromagnetic micro-scanning mirror (EM-MSM) is exploited; which is of 6.5 mm in diameter and its half angle is 7.8° for a horizontal scan and 6.53° for a vertical scan. Finally, we quantitatively show that images generated with an EM-MSM exhibit superior quality. By providing human-eye-modeled speckle measuring instruments and an EM-MSM for speckle reduction, it has a promising promotion to laser projector development.

Twenty Years of "Plug-and-Pond" Meadow Restoration: A Geomorphic Review

NASA Astrophysics Data System (ADS)

Natali, J.

2015-12-01

Channel incision has degraded the ecological function of wet meadows across montane regions of California. Conservation groups estimate that half of the Sierra Nevada's 333,000 acres of meadow are entrenched in a degraded state that is characterized by a shift from groundwater­fed, herbaceous vegetation to more sparse, drought­tolerant woody vegetation. My poster will present results of field research on a prominent restoration technique in California's montane meadows, the "Plug­and­Pond." Fundamentally, the technique re­channelizes the meadow by blocking flow into incised stream channels. Spoils dug from meadow sediments plug the incised channel, creating ponds as a by­product. One of three approaches to re­channelization ensues: (1) construct a new shallow and sinuous channel, (2) redirect flows into a remnant channel, (3) or allow the channel to define itself over the meadow floodplain. Re­ channelization aims to support overbank flows at 1.5 to 3 year recurrence intervals. Field surveys of ten of the oldest "plug-and-pond" meadow restoration projects in California reveal that channel bed degradation caused by meadow-scale changes to channel slope (i.e. culverts concentrating flows, channel straightening, meadow grazing) may be more conducive to intensive restoration approaches like Plug-and-Pond.

Vegetation of eastern Unalaska Island, Aleutian Islands, Alaska

USGS Publications Warehouse

Talbot, Stephen S.; Schofield, Wilfred B.; Talbot, Sandra L.; Daniëls, Fred J. A.

2010-01-01

Plant communities of Unalaska Island in the eastern Aleutian Islands of western Alaska, and their relationship to environmental variables, were studied using a combined Braun-Blanquet and multivariate approach. Seventy relevés represented the range of structural and compositional variation in the matrix of vegetation and landform zonation. Eleven major community types were distinguished within six physiognomic–ecological groups: I. Dry coastal meadows: Honckenya peploides beach meadow, Leymus mollis dune meadow. II. Mesic meadows: Athyrium filix-femina – Aconitum maximum meadow, Athyrium filix-femina – Calamagrostis nutkaensis meadow, Erigeron peregrinus – Thelypteris quelpaertensis meadow. III. Wet snowbed meadow: Carex nigricans snowbed meadow. IV. Heath: Linnaea borealis – Empetrum nigrum heath, Phyllodoce aleutica heath, Vaccinium uliginosum – Thamnolia vermicularis fellfield. V. Mire: Carex pluriflora – Plantago macrocarpa mire. VI. Deciduous shrub thicket: Salix barclayi – Athyrium filix-femina thicket. These were interpreted as a complex gradient primarily influenced by soil moisture, elevation, and pH. Phytogeographical and syntaxonomical analysis of the plant communities indicated that the dry coastal meadows, most of the heaths, and the mire vegetation belonged, respectively, to the widespread classes Honckenyo–Elymetea, Loiseleurio–Vaccinietea, and Scheuchzerio–Caricetea, characterized by their circumpolar and widespread species. Amphi-Beringian species were likely diagnostic of amphi-Beringian syntaxa, many of these yet to be described.

Speckle reduction in laser projection using a dynamic deformable mirror.

PubMed

Tran, Thi-Kim-Trinh; Chen, Xuyuan; Svensen, Øyvind; Akram, Muhammad Nadeem

2014-05-05

Despite of much effort and significant progress in recent years, speckle removal is still a challenge for laser projection technology. In this paper, speckle reduction by dynamic deformable mirror was investigated. Time varying independent speckle patterns were generated due to the angle diversity introduced by the dynamic mirror, and these speckle patterns were averaged out by the camera or human eyes, thus reducing speckle contrast in the final image. The speckle reduction by the wavelength diversity of the lasers was also studied. Both broadband lasers and narrowband laser were used for experiment. It is experimentally shown that speckle suppression can be attained by the widening of the spectrum of the lasers. Lower speckle contrast reduction was attained by the wavelength diversity for narrowband laser compared to the broadband lasers. This method of speckle reduction is suitable in laser projectors for wide screen applications where high power laser illumination is needed.

Geology of the Devils Hole area, Nevada

USGS Publications Warehouse

Carr, W.J.

1988-01-01

Detailed and reconnaissance mapping of the Devils Hole, Nevada, area has improved definition of the local geologic structure within a regional carbonate aquifer near its primary discharge points -- the springs of Ash Meadows. Several formerly unmapped calcite veins, and other young calcite-lined paleo-spring feeder zones were found, as well as a number of previously unknown small collapse areas in the limestone. Although the predominant structural grain of the area is oriented northwest, the importance of the very subordinate northeast-striking faults and fractures is underscored by their association with Devils Hole itself, with most of the collapse depressions, and with many of the calcite veins in ' lake beds ' and alluvium. Probable channeling of groundwater flow may occur along one important northeast-striking fault zone. The persistent tendency for openings may have been facilitated by underlying low-angle faults that separate brittle carbonate rocks from underlying, less-competent clastic rocks. (Author 's abstract)

Letter Report: Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Caliente, Lincoln County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Englebrecht; I. Kavouras; D. Campbell

2008-08-01

The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Beatty, Sarcobatus Flats, Rachel, Caliente, Pahranagat NWR, Crater Flat, and Tonopah Airport, and at four sites on the NTS (Engelbrecht et al., 2007a-d).more » The trailer is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data, on completion of the site's sampling program.« less

Letter Report: Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Pahranagat National Wildlife Refuge, Lincoln County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Englebrecht; I. Kavouras; D. Campbell

2008-08-01

The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Pahranagat NWR, Beatty, Rachel, Caliente, Crater Flat, and Tonopah Airport, and at four sites on the NTS (Engelbrecht et al., 2007a-d). The trailermore » is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data on completion of the site's sampling program.« less

Letter Report Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Pahranagat National Wildlife Refuge, Lincoln County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Engelbrecht; I. Kavouras; D. Campbell

2009-04-02

The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Pahranagat NWR, Beatty, Rachel, Caliente, Crater Flat, and Tonopah Airport, and at four sites on the NTS (Engelbrecht et al., 2007a-d). The trailermore » is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data on completion of the site's sampling program.« less

DOE/NV/26383-LTR2008-01 Letter Report Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Caliente, Lincoln County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Engelbrecht; I. Kavouras; D. Campbell

2009-04-02

The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Beatty, Sarcobatus Flats, Rachel, Caliente, Pahranagat NWR, Crater Flat, and Tonopah Airport, and at four sites on the NTS (Engelbrecht et al., 2007a-d).more » The trailer is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data, on completion of the site's sampling program.« less

Letter Report Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Tonopah Airport, Nye County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Engelbrecht; I. Kavouras; D. Campbell

2009-04-02

The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Tonopah Airport, Beatty, Rachel, Caliente, Pahranagat NWR, Crater Flat, and the Tonopah Airport, and at four sites on the NTS (Engelbrecht et al.,more » 2007a-d). The trailer is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data, on completion of the site's sampling program.« less

Letter Report: Yucca Mountain Environmental Monitoring Systems Initiative - Air Quality Scoping Study for Tonopah Airport, Nye County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Engelbrecht; I. Kavouras; D Campbell

2008-08-01

The Desert Research Institute (DRI) is performing a scoping study as part of the U.S. Department of Energy's Yucca Mountain Environmental Monitoring Systems Initiative (EMSI). The main objective is to obtain baseline air quality information for Yucca Mountain and an area surrounding the Nevada Test Site (NTS). Air quality and meteorological monitoring and sampling equipment housed in a mobile trailer (shelter) is collecting data at eight sites outside the NTS, including Ash Meadows National Wildlife Refuge (NWR), Tonopah Airport, Beatty, Rachel, Caliente, Pahranagat NWR, Crater Flat, and the Tonopah Airport, and at four sites on the NTS (Engelbrecht et al.,more » 2007a-d). The trailer is stationed at any one site for approximately eight weeks at a time. This letter report provides a summary of air quality and meteorological data, on completion of the site's sampling program.« less

Using of dynamic speckled speckles with a small number of scatterers for study of suspension of Chlamydia

NASA Astrophysics Data System (ADS)

Ulyanov, Sergey; Filonova, Nadezhda; Ulianova, Onega; Utz, Sergey; Moiseeva, Yulia; Subbotina, Irina; Kalduzova, Irina; Larionova, Olga; Feodorova, Valentina

2018-04-01

Theory of formation of speckled speckles at diffraction of focused Gaussian beam in the suspension, containing of Chlamydia trachomatis (CT) is presented. Optical model of scattering of light in suspension of Chlamydia is suggested. Formula for bandwidth of spectrum of intensity fluctuations in speckled speckles is derived. It has been demonstrated, that speckle-microscopy can be used for detection of CT bacteria for any concentration of the relevant cells in suspension.

Net primary productivity of subalpine meadows in Yosemite National Park in relation to climate variability

USGS Publications Warehouse

Moore, Peggy E.; Van Wagtendonk, Jan W.; Yee, Julie L.; McClaran, Mitchel P.; Cole, David N.; McDougald, Neil K.; Brooks, Matthew L.

2013-01-01

Subalpine meadows are some of the most ecologically important components of mountain landscapes, and primary productivity is important to the maintenance of meadow functions. Understanding how changes in primary productivity are associated with variability in moisture and temperature will become increasingly important with current and anticipated changes in climate. Our objective was to describe patterns and variability in aboveground live vascular plant biomass in relation to climatic factors. We harvested aboveground biomass at peak growth from four 64-m2 plots each in xeric, mesic, and hydric meadows annually from 1994 to 2000. Data from nearby weather stations provided independent variables of spring snow water content, snow-free date, and thawing degree days for a cumulative index of available energy. We assembled these climatic variables into a set of mixed effects analysis of covariance models to evaluate their relationships with annual aboveground net primary productivity (ANPP), and we used an information theoretic approach to compare the quality of fit among candidate models. ANPP in the xeric meadow was negatively related to snow water content and thawing degree days and in the mesic meadow was negatively related to snow water content. Relationships between ANPP and these 2 covariates in the hydric meadow were not significant. Increasing snow water content may limit ANPP in these meadows if anaerobic conditions delay microbial activity and nutrient availability. Increased thawing degree days may limit ANPP in xeric meadows by prematurely depleting soil moisture. Large within-year variation of ANPP in the hydric meadow limited sensitivity to the climatic variables. These relationships suggest that, under projected warmer and drier conditions, ANPP will increase in mesic meadows but remain unchanged in xeric meadows because declines associated with increased temperatures would offset the increases from decreased snow water content.

Water budget and flow attenuation in a small montane meadow in the Sierra Nevada, California

NASA Astrophysics Data System (ADS)

Mancuso, L. A.; Cornwell, K.

2011-12-01

The purpose of this study was to assess how montane meadows aid in flow attenuation and store groundwater. The Van Vleck meadow, a 73 acre relatively healthy montane meadow in the Sierra Nevada of northern California was chosen for this analysis due to its protected status (in the Eldorado National Forest) and drainage infrastructure (culverts managing flow into and out of the meadow). A water budget for the meadow was developed to understand the quantity and timing of water entering and leaving the meadow throughout the 2009-2010 water year. The water storage capacity was estimated from data collected from piezometers, seismic refraction surveys and weirs. Flow attenuation parameters were assessed by comparing water reservoir increases and decreases during specific precipitation events. Results suggest that the meadow does slow down surface water pass through. An imbalance of surface flow in versus surface flow out suggests that surplus inflow waters may be recharging deeper aquifer systems via bedrock fractures although additional work is necessary to confirm this connection.

RELATIONSHIPS OF MEADOW VEGETATION TO GROUNDWATER DEPTH: EFFECTS OF PRECIPITATION VARIABILITY AND STREAM INCISION

EPA Science Inventory

The composition of riparian meadow vegetation is controlled by access to groundwater. Depth to groundwater is controlled by meadow architecture and water source, and changes in either meadow architecture or water source through stream incision or changes in annual precipitation c...

Patterns and Drivers of Scattered Tree Loss in Agricultural Landscapes: Orchard Meadows in Germany (1968-2009)

PubMed Central

Plieninger, Tobias; Levers, Christian; Mantel, Martin; Costa, Augusta; Schaich, Harald; Kuemmerle, Tobias

2015-01-01

Scattered trees support high levels of farmland biodiversity and ecosystem services in agricultural landscapes, but they are threatened by agricultural intensification, urbanization, and land abandonment. This study aimed to map and quantify the decline of orchard meadows (scattered fruit trees of high nature conservation value) for a region in Southwestern Germany for the 1968 2009 period and to identify the driving forces of this decline. We derived orchard meadow loss from 1968 and 2009 aerial images and used a boosted regression trees modelling framework to assess the relative importance of 18 environmental, demographic, and socio-economic variables to test five alternative hypothesis explaining orchard meadow loss. We found that orchard meadow loss occurred in flatter areas, in areas where smaller plot sizes and fragmented orchard meadows prevailed, and in areas near settlements and infrastructure. The analysis did not confirm that orchard meadow loss was higher in areas where agricultural intensification was stronger and in areas of lower implementation levels of conservation policies. Our results demonstrated that the influential drivers of orchard meadow loss were those that reduce economic profitability and increase opportunity costs for orchards, providing incentives for converting orchard meadows to other, more profitable land uses. These insights could be taken up by local- and regional-level conservation policies to identify the sites of persistent orchard meadows in agricultural landscapes that would be prioritized in conservation efforts. PMID:25932914

Seagrass Herbivory Levels Sustain Site-Fidelity in a Remnant Dugong Population.

PubMed

D'Souza, Elrika; Patankar, Vardhan; Arthur, Rohan; Marbà, Núria; Alcoverro, Teresa

2015-01-01

Herds of dugong, a largely tropical marine megaherbivore, are known to undertake long-distance movements, sequentially overgrazing seagrass meadows in their path. Given their drastic declines in many regions, it is unclear whether at lower densities, their grazing is less intense, reducing their need to travel between meadows. We studied the effect of the feeding behaviour of a small dugong population in the Andaman and Nicobar archipelago, India to understand how small isolated populations graze seagrasses. In the seven years of our observation, all recorded dugongs travelled either solitarily or in pairs, and their use of seagrasses was limited to 8 meadows, some of which were persistently grazed. These meadows were relatively large, contiguous and dominated by short-lived seagrasses species. Dugongs consumed approximately 15% of meadow primary production, but there was a large variation (3-40% of total meadow production) in consumption patterns between meadows. The impact of herbivory was relatively high, with shoot densities c. 50% higher inside herbivore exclosures than in areas exposed to repeated grazing. Our results indicate that dugongs in the study area repeatedly graze the same meadows probably because the proportion of primary production consumed reduces shoot density to levels that are still above values that can trigger meadow abandonment. This ability of seagrasses to cope perhaps explains the long-term site fidelity shown by individual dugongs in these meadows. The fact that seagrass meadows in the archipelago are able to support dugong foraging requirements allows us to clearly identify locations where this remnant population persists, and where urgent management efforts can be directed.

Seagrass Herbivory Levels Sustain Site-Fidelity in a Remnant Dugong Population

PubMed Central

Patankar, Vardhan; Marbà, Núria

2015-01-01

Herds of dugong, a largely tropical marine megaherbivore, are known to undertake long-distance movements, sequentially overgrazing seagrass meadows in their path. Given their drastic declines in many regions, it is unclear whether at lower densities, their grazing is less intense, reducing their need to travel between meadows. We studied the effect of the feeding behaviour of a small dugong population in the Andaman and Nicobar archipelago, India to understand how small isolated populations graze seagrasses. In the seven years of our observation, all recorded dugongs travelled either solitarily or in pairs, and their use of seagrasses was limited to 8 meadows, some of which were persistently grazed. These meadows were relatively large, contiguous and dominated by short-lived seagrasses species. Dugongs consumed approximately 15% of meadow primary production, but there was a large variation (3–40% of total meadow production) in consumption patterns between meadows. The impact of herbivory was relatively high, with shoot densities c. 50% higher inside herbivore exclosures than in areas exposed to repeated grazing. Our results indicate that dugongs in the study area repeatedly graze the same meadows probably because the proportion of primary production consumed reduces shoot density to levels that are still above values that can trigger meadow abandonment. This ability of seagrasses to cope perhaps explains the long-term site fidelity shown by individual dugongs in these meadows. The fact that seagrass meadows in the archipelago are able to support dugong foraging requirements allows us to clearly identify locations where this remnant population persists, and where urgent management efforts can be directed. PMID:26492558

Neighborhood binary speckle pattern for deformation measurements insensitive to local illumination variation by digital image correlation.

PubMed

Zhao, Jian; Yang, Ping; Zhao, Yue

2017-06-01

Speckle pattern-based characteristics of digital image correlation (DIC) restrict its application in engineering fields and nonlaboratory environments, since serious decorrelation effect occurs due to localized sudden illumination variation. A simple and efficient speckle pattern adjusting and optimizing approach presented in this paper is aimed at providing a novel speckle pattern robust enough to resist local illumination variation. The new speckle pattern, called neighborhood binary speckle pattern, derived from original speckle pattern, is obtained by means of thresholding the pixels of a neighborhood at its central pixel value and considering the result as a binary number. The efficiency of the proposed speckle pattern is evaluated in six experimental scenarios. Experiment results indicate that the DIC measurements based on neighborhood binary speckle pattern are able to provide reliable and accurate results, even though local brightness and contrast of the deformed images have been seriously changed. It is expected that the new speckle pattern will have more potential value in engineering applications.

Meadow knapweed in the Northeast: Should I know this species?

USDA-ARS?s Scientific Manuscript database

Meadow knapweed (Centaurea x moncktonii) is increasingly prevalent in New York agricultural lands, including pastures, meadows and waste areas. It is a hybrid of black (C. nigra) and brown (C. jacea) knapweeds that can be similar in appearance to the parental species, and we believe that meadow kna...

UTILIZATION OF IN-STREAM STRUCTURES FOR WET MEADOW STABILIZATION IN THE CENTRAL GREAT BASIN: A PROCESS-ORIENTED APPROACH

EPA Science Inventory

Wet meadows, riparian corridor phreatophyte assemblages, and high-altitude spring-fed aspen meadows all serve as important habitats in the Great Basin of central Nevada. Geomorphic and biotic characterization of the wet meadow complexes demonstrates that most terminate downvalle...

Progress in high temperature speckle-shift strain measurement system

NASA Technical Reports Server (NTRS)

Lant, Christian T.; Barranger, John P.

1990-01-01

A fast, easy to use speckle tracking system is under development for the speckle-shift strain measurement technique. Preliminary correlation tests on wire specimens show strong correlations of well-developed speckle patterns. Stable cross-correlations were obtained from a tungsten filament at 2480 C. An analysis of the optical system determines the minimum required sampling frequency of the speckle pattern to be 2.55 pixels per speckle.

Understanding the exposure-time effect on speckle contrast measurements for laser displays

NASA Astrophysics Data System (ADS)

Suzuki, Koji; Kubota, Shigeo

2018-02-01

To evaluate the influence of exposure time on speckle noise for laser displays, speckle contrast measurement method was developed observable at a human eye response time using a high-sensitivity camera which has a signal multiplying function. The nonlinearity of camera light sensitivity was calibrated to measure accurate speckle contrasts, and the measuring lower limit noise of speckle contrast was improved by applying spatial-frequency low pass filter to the captured images. Three commercially available laser displays were measured over a wide range of exposure times from tens of milliseconds to several seconds without adjusting the brightness of laser displays. The speckle contrast of raster-scanned mobile projector without any speckle-reduction device was nearly constant over various exposure times. On the contrary to this, in full-frame projection type laser displays equipped with a temporally-averaging speckle-reduction device, some of their speckle contrasts close to the lower limits noise were slightly increased at the shorter exposure time due to the noise. As a result, the exposure-time effect of speckle contrast could not be observed in our measurements, although it is more reasonable to think that the speckle contrasts of laser displays, which are equipped with the temporally-averaging speckle-reduction device, are dependent on the exposure time. This discrepancy may be attributed to the underestimation of temporal averaging factor. We expected that this method is useful for evaluating various laser displays and clarify the relationship between the speckle noise and the exposure time for a further verification of speckle reduction.

Tandem-pulsed acousto-optics: an analytical framework of modulated high-contrast speckle patterns.

PubMed

Resink, S G; Steenbergen, W

2015-06-07

Recently we presented acousto-optic (AO) probing of scattering media using addition or subtraction of speckle patterns due to tandem nanosecond pulses. Here we present a theoretical framework for ideal (polarized, noise-free) speckle patterns with unity contrast that links ultrasound-induced optical phase modulation, the fraction of light that is tagged by ultrasound, speckle contrast, mean square difference of speckle patterns and the contrast of the summation of speckle patterns acquired at different ultrasound phases. We derive the important relations from basic assumptions and definitions, and then validate them with simulations. For ultrasound-generated phase modulation angles below 0.7 rad (assuming uniform modulation), we are now able to relate speckle pattern statistics to the acousto-optic phase modulation. Hence our theory allows quantifying speckle observations in terms of ultrasonically tagged fractions of light for near-unity-contrast speckle patterns.

Traditional Livelihoods, Conservation and Meadow Ecology in Jiuzhaigou National Park, Sichuan, China

PubMed Central

Urgenson, Lauren; Schmidt, Amanda H.; Combs, Julie; Harrell, Stevan; Hinckley, Thomas; Yang, Qingxia; Ma, Ziyu; Yongxian, Li; Hongliang, Lü; MacIver, Andrew

2015-01-01

Jiuzhaigou National Park (JNP) is a site of global conservation significance. Conservation policies in JNP include the implementation of two national reforestation programs to increase forest cover and the exclusion of local land-use. We use archaeological excavation, ethnographic interviews, remote sensing and vegetation surveys to examine the implications of these policies for non-forest, montane meadows. We find that Amdo Tibetan people cultivated the valley for >2,000 years, creating and maintaining meadows through land clearing, burning and grazing. Meadows served as sites for gathering plants and mushrooms and over 40 % of contemporary species are ethnobotanically useful. Remote sensing analyses indicate a substantial (69.6 %) decline in meadow area between 1974 and 2004. Respondents report a loss of their “true history” and connections to the past associated with loss of meadows. Conservation policies intended to preserve biodiversity are unintentionally contributing to the loss of these ecologically and culturally significant meadow habitats. PMID:26097267

77 FR 27040 - Combined Notice of Filings #1

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-08

... Farm LLC, Blackstone Wind Farm II LLC, High Trail Wind Farm, LLC, Meadow Lake Wind Farm LLC, Meadow Lake Wind Farm II LLC, Meadow Lake Wind Farm III LLC, Meadow Lake Wind Farm IV LLC, Old Trail Wind Farm, LLC, and Paulding Wind Farm II LLC. Description: Land Acquisition Report of Blackstone Wind Farm LLC...

75 FR 29700 - Endangered and Threatened Wildlife and Plants; Revised Critical Habitat for the Preble's Meadow...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-27

... Habitat for the Preble's Meadow Jumping Mouse AGENCY: Fish and Wildlife Service, Interior. ACTION... for the Preble's meadow jumping mouse (Zapus hudsonius preblei) under the Endangered Species Act of... our proposed revision of critical habitat for the Preble's Meadow jumping mouse (PMJM) that was...

Hydrologic processes influencing meadow ecosystems [chapter 4

Treesearch

Mark L. Lord; David G. Jewett; Jerry R. Miller; Dru Germanoski; Jeanne C. Chambers

2011-01-01

The hydrologic regime exerts primary control on riparian meadow complexes and is strongly influenced by past and present geomorphic processes; biotic processes; and, in some cases, anthropogenic activities. Thus, it is essential to understand not only the hydrologic processes that operate within meadow complexes but also the interactions of meadow hydrology with other...

Micrometeorological Observations in a Sierra Nevada Meadow

NASA Astrophysics Data System (ADS)

Blackburn, D. A.; Oliphant, A. J.

2016-12-01

Mountain meadows play important roles on watershed and ecosystem services, including improving water quality, moderating runoff and providing biodiversity hotspots. In the Sierra Nevada, mountain meadows are an integral part of the mountain ecosystem and watersheds that impact more than 20 million people. Grazing, logging and other forms of anthropogenic land use in the Sierra Nevada have degraded the functioning of meadows, by altering the morphology, hydrology and vegetation. Existing meandering stream networks become incised and straightened by increased runoff, which effectively lowers the water table and completely alters the ecosystem from moist meadow sedges, grasses, and herbs to dryland grass and shrubs. Given the large growth cycle in healthy meadows, it is also expected that they sequester a significant amount of carbon and enhance atmospheric humidity through evapotranspiration, but relatively little work has been done on the bio-micrometeorology of meadows. The purpose of this study is to assess the growing season carbon, water and energy budgets of a partly degraded meadow in the northern Sierra Nevada. Loney Meadow, located at nearly 2,000 m in the Tahoe National Forest, has been identified as a degraded meadow and is scheduled to undergo restoration work to raise the water table in 2017. A micrometeorological tower with eddy covariance instruments was deployed at the site for most of the snow-free period from May to October 2016. The measurements include: fluxes of CO2, water vapor, surface radiation and energy budget components; ancillary meteorological and soil data; and an automated camera capturing daily images of the meadow surface. The poster will present diurnal and seasonal CO2 on a daily basis with a very rapid increase at the onset of the growing season.

Mediating Water Temperature Increases Due to Livestock and Global Change in High Elevation Meadow Streams of the Golden Trout Wilderness

PubMed Central

Nusslé, Sébastien; Matthews, Kathleen R.; Carlson, Stephanie M.

2015-01-01

Rising temperatures due to climate change are pushing the thermal limits of many species, but how climate warming interacts with other anthropogenic disturbances such as land use remains poorly understood. To understand the interactive effects of climate warming and livestock grazing on water temperature in three high elevation meadow streams in the Golden Trout Wilderness, California, we measured riparian vegetation and monitored water temperature in three meadow streams between 2008 and 2013, including two “resting” meadows and one meadow that is partially grazed. All three meadows have been subject to grazing by cattle and sheep since the 1800s and their streams are home to the imperiled California golden trout (Oncorhynchus mykiss aguabonita). In 1991, a livestock exclosure was constructed in one of the meadows (Mulkey), leaving a portion of stream ungrazed to minimize the negative effects of cattle. In 2001, cattle were removed completely from two other meadows (Big Whitney and Ramshaw), which have been in a “resting” state since that time. Inside the livestock exclosure in Mulkey, we found that riverbank vegetation was both larger and denser than outside the exclosure where cattle were present, resulting in more shaded waters and cooler maximal temperatures inside the exclosure. In addition, between meadows comparisons showed that water temperatures were cooler in the ungrazed meadows compared to the grazed area in the partially grazed meadow. Finally, we found that predicted temperatures under different global warming scenarios were likely to be higher in presence of livestock grazing. Our results highlight that land use can interact with climate change to worsen the local thermal conditions for taxa on the edge and that protecting riparian vegetation is likely to increase the resiliency of these ecosystems to climate change. PMID:26565706

Mediating Water Temperature Increases Due to Livestock and Global Change in High Elevation Meadow Streams of the Golden Trout Wilderness.

PubMed

Nusslé, Sébastien; Matthews, Kathleen R; Carlson, Stephanie M

2015-01-01

Rising temperatures due to climate change are pushing the thermal limits of many species, but how climate warming interacts with other anthropogenic disturbances such as land use remains poorly understood. To understand the interactive effects of climate warming and livestock grazing on water temperature in three high elevation meadow streams in the Golden Trout Wilderness, California, we measured riparian vegetation and monitored water temperature in three meadow streams between 2008 and 2013, including two "resting" meadows and one meadow that is partially grazed. All three meadows have been subject to grazing by cattle and sheep since the 1800s and their streams are home to the imperiled California golden trout (Oncorhynchus mykiss aguabonita). In 1991, a livestock exclosure was constructed in one of the meadows (Mulkey), leaving a portion of stream ungrazed to minimize the negative effects of cattle. In 2001, cattle were removed completely from two other meadows (Big Whitney and Ramshaw), which have been in a "resting" state since that time. Inside the livestock exclosure in Mulkey, we found that riverbank vegetation was both larger and denser than outside the exclosure where cattle were present, resulting in more shaded waters and cooler maximal temperatures inside the exclosure. In addition, between meadows comparisons showed that water temperatures were cooler in the ungrazed meadows compared to the grazed area in the partially grazed meadow. Finally, we found that predicted temperatures under different global warming scenarios were likely to be higher in presence of livestock grazing. Our results highlight that land use can interact with climate change to worsen the local thermal conditions for taxa on the edge and that protecting riparian vegetation is likely to increase the resiliency of these ecosystems to climate change.

Gophers as geomorphic agents in the Colorado Front Range subalpine zone

NASA Astrophysics Data System (ADS)

Winchell, Eric W.; Anderson, Robert S.; Lombardi, Elizabeth M.; Doak, Daniel F.

2016-07-01

Gophers are significant geomorphic agents in many landscapes. We document activity of the northern pocket gopher (Thomomys talpoides) in two small subalpine meadows (1050-1800 m2) of the Front Range, Colorado, USA. We tracked locations and volumes of mounds and subnivean infilled tunnels over one year and probed the thickness of the biomantle within one meadow. We infer that only 5-7 gophers occupied each meadow, implying a gopher density of 28-67 ha- 1. Fractional areal coverage of the meadows by diggings suggests that within 49-95 years gophers would fully resurface the meadows. Annual volumes of excavated soil correspond to the equivalent of 1 mm of material spread evenly over the meadows. Probed meadow resistance depths reveal a pattern we interpret to be stone lines at roughly 15 cm depths; implied vertical turnover times are therefore roughly 150 years. These spatial and temporal patterns imply that gophers should be able to churn the biomantle on approximately century timescales and should fully resurface the meadow areas in similar timescales. These field data also contribute to an investigation of lateral sediment transport; given the local slope of the landscape, gopher-driven sediment transport within our two study sites suggests a landscape diffusivity of 0.008 m2y- 1. At no time do gophers occupy the forest. As evidenced by subnivean infilled tunnels, winter activity is restricted to the upslope (and hence upwind) meadow edges, which correspond to high snow cover and warm (> 0 °C) shallow subsurface soil temperatures. Subsequent activity expands downhill into the meadows and shows a distinct pulse of mound activity in late summer through early fall prior to snowfall. Local forest fire history has led to much more extensive meadows in the past, suggesting that the geomorphic influence of gophers in the landscape is much more widespread than the present distribution of meadows and may cover the entire subalpine region of the Front Range on millennial timescales.

Changes in plant biomass and species composition of alpine Kobresia meadows along altitudinal gradient on the Qinghai-Tibetan Plateau.

PubMed

Wang, ChangTing; Cao, GuangMin; Wang, QiLan; Jing, ZengChun; Ding, LuMing; Long, RuiJun

2008-01-01

Alpine Kobresia meadows are major vegetation types on the Qinghai-Tibetan Plateau. There is growing concern over their relationships among biodiversity, productivity and environments. Despite the importance of species composition, species richness, the type of different growth forms, and plant biomass structure for Kobresia meadow ecosystems, few studies have been focused on the relationship between biomass and environmental gradient in the Kobresia meadow plant communities, particularly in relation to soil moisture and edaphic gradients. We measured the plant species composition, herbaceous litter, aboveground and belowground biomass in three Kobresia meadow plant communities in Haibei Alpine Meadow Ecosystem Research Station from 2001 to 2004. Community differences in plant species composition were reflected in biomass distribution. The total biomass showed a decrease from 13196.96+/-719.69 g/m(2) in the sedge-dominated K. tibetica swamp to 2869.58+/-147.52 g/m(2) in the forb and sedge dominated K. pygmaea meadow, and to 2153.08+/-141.95 g/m(2) in the forbs and grasses dominated K. humilis along with the increase of altitude. The vertical distribution of belowground biomass is distinct in the three meadow communities, and the belowground biomass at the depth of 0-10 cm in K. tibetica swamp meadow was significantly higher than that in K. humilis and K. pygmaea meadows (P<0.01). The herbaceous litter in K. tibetica swamp was significantly higher than those in K. pygnaeca and K. humilis meadows. The effects of plant litter are enhanced when ground water and soil moisture levels are raised. The relative importance of litter and vegetation may vary with soil water availability. In the K. tibetica swamp, total biomass was negatively correlated to species richness (P<0.05); aboveground biomass was positively correlated to soil organic matter, soil moisture, and plant cover (P<0.05); belowground biomass was positively correlated with soil moisture (P<0.05). However, in the K. pygnaeca and K. humilis meadow communities, aboveground biomass was positively correlated to soil organic matter and soil total nitrogen (P<0.05). This suggests that the distribution of biomass coincided with soil moisture and edaphic gradient in alpine meadows.

Groundwater, springs, and stream flow generation in an alpine meadow of a tropical glacierized catchment

NASA Astrophysics Data System (ADS)

Gordon, R.; Lautz, L. K.; McKenzie, J. M.; Mark, B. G.; Chavez, D.

2013-12-01

Melting tropical glaciers supply approximately half of dry season stream discharge in glacierized valleys of the Cordillera Blanca, Peru. The remainder of streamflow originates as groundwater stored in alpine meadows, moraines and talus slopes. A better understanding of the dynamics of alpine groundwater, including sources and contributions to streamflow, is important for making accurate estimates of glacial inputs to the hydrologic budget, and for our ability to make predictions about future water resources as glaciers retreat. Our field study, conducted during the dry season in the Llanganuco valley, focused on a 0.5-km2 alpine meadow complex at 4400 m elevation, which includes talus slopes, terminal moraines, and a debris fan. Two glacial lakes and springs throughout the complex feed a network of stream channels that flow across the meadow (~2 km total length). We combined tracer measurements of stream and spring discharge and groundwater-surface water exchange with synoptic sampling of water isotopic and geochemical composition, in order to characterize and quantify contributions to streamflow from different geomorphic features. Surface water inputs to the stream channels totaled 58 l/s, while the stream gained an additional 57 l/s from groundwater inputs. Water chemistry is primarily controlled by flowpath type (surface/subsurface) and length, as well as bedrock lithology, while stable water isotopic composition appears to be controlled by water source (glacial lake, meadow or deep groundwater). Stream water chemistry is most similar to meadow groundwater springs, but isotopic composition suggests that the majority of stream water, which issues from springs at the meadow/fan interface, is from the same glacial source as the up-gradient lake. Groundwater sampled from piezometers in confined meadow aquifers is unique in both chemistry and isotopic composition, but does not contribute a large percentage of stream water exiting this small meadow, as quantified by discharge measurements and isotopic mixing. However, we expect that as streams flow down through extensive meadows and wetlands in many Cordillera Blanca valleys, meadow groundwater is a more significant contributor to streamflow. Results from this small, high meadow in Llanganuco will be compared to a larger and lower-elevation meadow system in the Quilcayhuanca valley.

Stochastic speckle noise compensation in optical coherence tomography using non-stationary spline-based speckle noise modelling.

PubMed

Cameron, Andrew; Lui, Dorothy; Boroomand, Ameneh; Glaister, Jeffrey; Wong, Alexander; Bizheva, Kostadinka

2013-01-01

Optical coherence tomography (OCT) allows for non-invasive 3D visualization of biological tissue at cellular level resolution. Often hindered by speckle noise, the visualization of important biological tissue details in OCT that can aid disease diagnosis can be improved by speckle noise compensation. A challenge with handling speckle noise is its inherent non-stationary nature, where the underlying noise characteristics vary with the spatial location. In this study, an innovative speckle noise compensation method is presented for handling the non-stationary traits of speckle noise in OCT imagery. The proposed approach centers on a non-stationary spline-based speckle noise modeling strategy to characterize the speckle noise. The novel method was applied to ultra high-resolution OCT (UHROCT) images of the human retina and corneo-scleral limbus acquired in-vivo that vary in tissue structure and optical properties. Test results showed improved performance of the proposed novel algorithm compared to a number of previously published speckle noise compensation approaches in terms of higher signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR) and better overall visual assessment.

Stochastic speckle noise compensation in optical coherence tomography using non-stationary spline-based speckle noise modelling

PubMed Central

Cameron, Andrew; Lui, Dorothy; Boroomand, Ameneh; Glaister, Jeffrey; Wong, Alexander; Bizheva, Kostadinka

2013-01-01

Optical coherence tomography (OCT) allows for non-invasive 3D visualization of biological tissue at cellular level resolution. Often hindered by speckle noise, the visualization of important biological tissue details in OCT that can aid disease diagnosis can be improved by speckle noise compensation. A challenge with handling speckle noise is its inherent non-stationary nature, where the underlying noise characteristics vary with the spatial location. In this study, an innovative speckle noise compensation method is presented for handling the non-stationary traits of speckle noise in OCT imagery. The proposed approach centers on a non-stationary spline-based speckle noise modeling strategy to characterize the speckle noise. The novel method was applied to ultra high-resolution OCT (UHROCT) images of the human retina and corneo-scleral limbus acquired in-vivo that vary in tissue structure and optical properties. Test results showed improved performance of the proposed novel algorithm compared to a number of previously published speckle noise compensation approaches in terms of higher signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR) and better overall visual assessment. PMID:24049697

Speckle disturbance limit in laser-based cinema projection systems

PubMed Central

Verschaffelt, Guy; Roelandt, Stijn; Meuret, Youri; Van den Broeck, Wendy; Kilpi, Katriina; Lievens, Bram; Jacobs, An; Janssens, Peter; Thienpont, Hugo

2015-01-01

In a multi-disciplinary effort, we investigate the level of speckle that can be tolerated in a laser cinema projector based on a quality of experience experiment with movie clips shown to a test audience in a real-life movie theatre setting. We identify a speckle disturbance threshold by statistically analyzing the observers’ responses for different values of the amount of speckle, which was monitored using a well-defined speckle measurement method. The analysis shows that the speckle perception of a human observer is not only dependent on the objectively measured amount of speckle, but it is also strongly influenced by the image content. The speckle disturbance limit for movies turns out to be substantially larger than that for still images, and hence is easier to attain. PMID:26370531

Statistical model for speckle pattern optimization.

PubMed

Su, Yong; Zhang, Qingchuan; Gao, Zeren

2017-11-27

Image registration is the key technique of optical metrologies such as digital image correlation (DIC), particle image velocimetry (PIV), and speckle metrology. Its performance depends critically on the quality of image pattern, and thus pattern optimization attracts extensive attention. In this article, a statistical model is built to optimize speckle patterns that are composed of randomly positioned speckles. It is found that the process of speckle pattern generation is essentially a filtered Poisson process. The dependence of measurement errors (including systematic errors, random errors, and overall errors) upon speckle pattern generation parameters is characterized analytically. By minimizing the errors, formulas of the optimal speckle radius are presented. Although the primary motivation is from the field of DIC, we believed that scholars in other optical measurement communities, such as PIV and speckle metrology, will benefit from these discussions.

Speckle disturbance limit in laser-based cinema projection systems.

PubMed

Verschaffelt, Guy; Roelandt, Stijn; Meuret, Youri; Van den Broeck, Wendy; Kilpi, Katriina; Lievens, Bram; Jacobs, An; Janssens, Peter; Thienpont, Hugo

2015-09-15

In a multi-disciplinary effort, we investigate the level of speckle that can be tolerated in a laser cinema projector based on a quality of experience experiment with movie clips shown to a test audience in a real-life movie theatre setting. We identify a speckle disturbance threshold by statistically analyzing the observers' responses for different values of the amount of speckle, which was monitored using a well-defined speckle measurement method. The analysis shows that the speckle perception of a human observer is not only dependent on the objectively measured amount of speckle, but it is also strongly influenced by the image content. The speckle disturbance limit for movies turns out to be substantially larger than that for still images, and hence is easier to attain.

Speckle disturbance limit in laser-based cinema projection systems

NASA Astrophysics Data System (ADS)

Verschaffelt, Guy; Roelandt, Stijn; Meuret, Youri; van den Broeck, Wendy; Kilpi, Katriina; Lievens, Bram; Jacobs, An; Janssens, Peter; Thienpont, Hugo

2015-09-01

In a multi-disciplinary effort, we investigate the level of speckle that can be tolerated in a laser cinema projector based on a quality of experience experiment with movie clips shown to a test audience in a real-life movie theatre setting. We identify a speckle disturbance threshold by statistically analyzing the observers’ responses for different values of the amount of speckle, which was monitored using a well-defined speckle measurement method. The analysis shows that the speckle perception of a human observer is not only dependent on the objectively measured amount of speckle, but it is also strongly influenced by the image content. The speckle disturbance limit for movies turns out to be substantially larger than that for still images, and hence is easier to attain.

Speckle phase near random surfaces

NASA Astrophysics Data System (ADS)

Chen, Xiaoyi; Cheng, Chuanfu; An, Guoqiang; Han, Yujing; Rong, Zhenyu; Zhang, Li; Zhang, Meina

2018-03-01

Based on Kirchhoff approximation theory, the speckle phase near random surfaces with different roughness is numerically simulated. As expected, the properties of the speckle phase near the random surfaces are different from that in far field. In addition, as scattering distances and roughness increase, the average fluctuations of the speckle phase become larger. Unusually, the speckle phase is somewhat similar to the corresponding surface topography. We have performed experiments to verify the theoretical simulation results. Studies in this paper contribute to understanding the evolution of speckle phase near a random surface and provide a possible way to identify a random surface structure based on its speckle phase.

A multi-scale evaluation of pack stack effects on subalpine meadow plant communities in the Sierra Nevada

USDA-ARS?s Scientific Manuscript database

We evaluated the influence of pack stock (i.e., horse and mule) use on meadow plant communities in Sequoia and Yosemite National Parks in the Sierra Nevada mountains of California. Meadows were sampled to account for inherent variability across multiple scales by: 1) controlling for among-meadow var...

Characterizing meadow vegetation with multitemporal Landsat thematic mapper remote sensing.

Treesearch

Alan A. Ager; Karen E. Owens

2004-01-01

Wet meadows are important biological components in the Blue Mountains of eastern Oregon. Many meadows in the Blue Mountains and elsewhere in the Western United States are in a state of change owing to grazing, mining, logging, road development, and other factors. This project evaluated the utility of remotely sensed data to characterize and monitor meadow vegetation...

Speckled lentiginous nevus: A rare presentation associated with motor neuropathy and muscular atrophy in a child.

PubMed

Greywal, Tanya; Matiz, Catalina

2018-05-01

Speckled lentiginous nevus syndrome has been described in individuals with a speckled lentiginous nevus with rare associated neurologic deficits. Because speckled lentiginous nevus syndrome almost always affects adults, it is not typically considered when evaluating children. We present the first reported case of speckled lentiginous nevus syndrome presenting in a young child with muscle atrophy and motor deficits affecting muscles along the same distribution as the speckled lentiginous nevus. © 2018 Wiley Periodicals, Inc.

Inducible fluorescent speckle microscopy

PubMed Central

Aguiar, Paulo; Belsley, Michael; Maiato, Helder

2016-01-01

The understanding of cytoskeleton dynamics has benefited from the capacity to generate fluorescent fiducial marks on cytoskeleton components. Here we show that light-induced imprinting of three-dimensional (3D) fluorescent speckles significantly improves speckle signal and contrast relative to classic (random) fluorescent speckle microscopy. We predict theoretically that speckle imprinting using photobleaching is optimal when the laser energy and fluorophore responsivity are related by the golden ratio. This relation, which we confirm experimentally, translates into a 40% remaining signal after speckle imprinting and provides a rule of thumb in selecting the laser power required to optimally prepare the sample for imaging. This inducible speckle imaging (ISI) technique allows 3D speckle microscopy to be performed in readily available libraries of cell lines or primary tissues expressing fluorescent proteins and does not preclude conventional imaging before speckle imaging. As a proof of concept, we use ISI to measure metaphase spindle microtubule poleward flux in primary cells and explore a scaling relation connecting microtubule flux to metaphase duration. PMID:26783303

Development of Speckle Interferometry Algorithm and System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shamsir, A. A. M.; Jafri, M. Z. M.; Lim, H. S.

2011-05-25

Electronic speckle pattern interferometry (ESPI) method is a wholefield, non destructive measurement method widely used in the industries such as detection of defects on metal bodies, detection of defects in intergrated circuits in digital electronics components and in the preservation of priceless artwork. In this research field, this method is widely used to develop algorithms and to develop a new laboratory setup for implementing the speckle pattern interferometry. In speckle interferometry, an optically rough test surface is illuminated with an expanded laser beam creating a laser speckle pattern in the space surrounding the illuminated region. The speckle pattern is opticallymore » mixed with a second coherent light field that is either another speckle pattern or a smooth light field. This produces an interferometric speckle pattern that will be detected by sensor to count the change of the speckle pattern due to force given. In this project, an experimental setup of ESPI is proposed to analyze a stainless steel plate using 632.8 nm (red) wavelength of lights.« less

Inducible fluorescent speckle microscopy.

PubMed

Pereira, António J; Aguiar, Paulo; Belsley, Michael; Maiato, Helder

2016-01-18

The understanding of cytoskeleton dynamics has benefited from the capacity to generate fluorescent fiducial marks on cytoskeleton components. Here we show that light-induced imprinting of three-dimensional (3D) fluorescent speckles significantly improves speckle signal and contrast relative to classic (random) fluorescent speckle microscopy. We predict theoretically that speckle imprinting using photobleaching is optimal when the laser energy and fluorophore responsivity are related by the golden ratio. This relation, which we confirm experimentally, translates into a 40% remaining signal after speckle imprinting and provides a rule of thumb in selecting the laser power required to optimally prepare the sample for imaging. This inducible speckle imaging (ISI) technique allows 3D speckle microscopy to be performed in readily available libraries of cell lines or primary tissues expressing fluorescent proteins and does not preclude conventional imaging before speckle imaging. As a proof of concept, we use ISI to measure metaphase spindle microtubule poleward flux in primary cells and explore a scaling relation connecting microtubule flux to metaphase duration. © 2016 Pereira et al.

Dispersion of speckle suppression efficiency for binary DOE structures: spectral domain and coherent matrix approaches.

PubMed

Lapchuk, Anatoliy; Prygun, Olexandr; Fu, Minglei; Le, Zichun; Xiong, Qiyuan; Kryuchyn, Andriy

2017-06-26

We present the first general theoretical description of speckle suppression efficiency based on an active diffractive optical element (DOE). The approach is based on spectral analysis of diffracted beams and a coherent matrix. Analytical formulae are obtained for the dispersion of speckle suppression efficiency using different DOE structures and different DOE activation methods. We show that a one-sided 2D DOE structure has smaller speckle suppression range than a two-sided 1D DOE structure. Both DOE structures have sufficient speckle suppression range to suppress low-order speckles in the entire visible range, but only the two-sided 1D DOE can suppress higher-order speckles. We also show that a linear shift 2D DOE in a laser projector with a large numerical aperture has higher effective speckle suppression efficiency than the method using switching or step-wise shift DOE structures. The generalized theoretical models elucidate the mechanism and practical realization of speckle suppression.

Identification of a chemical inhibitor for nuclear speckle formation: Implications for the function of nuclear speckles in regulation of alternative pre-mRNA splicing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kurogi, Yutaro; Matsuo, Yota; Mihara, Yuki

2014-03-28

Highlights: • We identified tubercidin as a compound inducing aberrant formation of the speckles. • Tubercidin causes delocalization of poly (A){sup +}RNAs from nuclear speckles. • Tubercidin induces dispersion of splicing factors from nuclear speckles. • Tubercidin affects alternative pre-mRNA splicing. • Nuclear speckles play a role in regulation of alternative pre-mRNA splicing. - Abstract: Nuclear speckles are subnuclear structures enriched with RNA processing factors and poly (A){sup +} RNAs comprising mRNAs and poly (A){sup +} non-coding RNAs (ncRNAs). Nuclear speckles are thought to be involved in post-transcriptional regulation of gene expression, such as pre-mRNA splicing. By screening 3585 culturemore » extracts of actinomycetes with in situ hybridization using an oligo dT probe, we identified tubercidin, an analogue of adenosine, as an inhibitor of speckle formation, which induces the delocalization of poly (A){sup +} RNA and dispersion of splicing factor SRSF1/SF2 from nuclear speckles in HeLa cells. Treatment with tubercidin also decreased steady-state MALAT1 long ncRNA, thought to be involved in the retention of SRSF1/SF2 in nuclear speckles. In addition, we found that tubercidin treatment promoted exon skipping in the alternative splicing of Clk1 pre-mRNA. These results suggest that nuclear speckles play a role in modulating the concentration of splicing factors in the nucleoplasm to regulate alternative pre-mRNA splicing.« less

[Laser speckle suppression due to dynamic multiple scattering scheme introduced by oblique incidence].

PubMed

Xu, Mei-fang; Gao, Wen-hong; Shi, Yun-bo; Wang, Hao-quan; Du, Bin-bin

2014-06-01

Speckle suppression has been the research focus in laser display technology. In the present paper, the relation between multiple scattering and the size of speckle grains is established by analyzing the properties of speckle generated by the laser beam through SiO2 suspension. Combined with dynamic light scattering theory, laser speckle suppression due to dynamic multiple scattering scheme introduced by oblique incidence is proposed. A speckle suppression element consists of a static diffuser and a light pipe containing the water suspension of SiO2 microspheres with a diameter of 300 nm and a molar concentration of 3.0 x 10(-4) μm3, which is integrated with the laser display system. The laser beam with different incident angles into the SiO2 suspension affecting the contrast of the speckle images is analyzed by the experiments. The results demonstrate that the contrast of the speckle image can be reduced to 0.067 from 0.43 when the beam with the incident angle of approximately 8 degrees illuminates into the SiO2 suspension. The spatial average of speckle granules and the temporal average of speckle images were achieved by the proposed method, which improved the effect of speckle suppression. The proposed element for speckle suppression improved the reliability and reduced the cost of laser projection system, since no mechanical vibration is needed and it is convenient to integrate the element with the existing projection system.

Habitat conditions of montane meadows associated with restored and unrestored stream channels of California

Treesearch

K. L. Pope; D. S. Montoya; J. N. Brownlee; J. Dierks; T. E. Lisle

2015-01-01

Mountain meadow habitats are valued for their ecological importance. They attenuate floods, improve water quality, and support high biodiversity. Many meadow habitats in the western US are degraded, and efforts are increasing to restore these montane meadow ecosystems. Rewatering projects such as pond-and-plug quickly raise the water table by blocking the existing...

Soil microbial structure and function post-volcanic eruption on Kasatochi Island and regional controls on microbial heterogeneity

NASA Astrophysics Data System (ADS)

Zeglin, L. H.; Rainey, F.; Wang, B.; Waythomas, C.; Talbot, S. L.

2013-12-01

Microorganisms are abundant and diverse in soil and their integrated activity drives nutrient cycling on the ecosystem scale. Organic matter (OM) inputs from plant production support microbial heterotrophic life, and soil geochemistry constrains microbial activity and diversity. As vegetation and soil develops over time, these factors change, modifying the controls on microbial heterogeneity. Following a volcanic eruption, ash deposition creates new surfaces where both organismal growth and weathering processes are effectively reset. The trajectory of microbial community development following this disturbance depends on both organic matter accumulation and geochemical constraints. Also, dispersal of microbial cells to the sterile ash surface may determine microbial community succession. The Aleutian Islands (Alaska, USA) are a dynamic volcanic region, with active and dormant volcanoes distributed across the volcanic arc. One of these volcanoes, Kasatochi, erupted violently in August 2008, burying a small lush island in pryoclastic flows and fine ash. Since, plants and birds are beginning to re-establish on developing surfaces, including legacy soils exposed by rapid erosion of pyroclastic deposits, suggesting that recovery of microbial life is also proceeding. However, soil microbial diversity and function has not been examined on Kasatochi Island or across the greater Aleutian region. The project goal is to address these questions: How is soil microbial community structure and function developing following the Kasatochi eruption? What is the relative importance of dispersal, soil OM and geochemistry to microbial community heterogeneity across the Aleutians? Surface mineral soil (20-cm depth) samples were collected from Kasatochi Island in summer 2013, five years after the 2008 eruption, and from eight additional Aleutian islands. On Kasatochi, pryoclastic deposits, exposed legacy soils supporting regrowth of remnant dune wild-rye (Leymus mollis) and mesic meadow plant communities, and soils impacted by recovering seabird rookeries were sampled. On the other islands, soils supporting both Leymus and mesic meadow communities (representative of dominant vegetation types on Kasatochi pre-eruption) were sampled. For each soil category and island combination, three transects of soil cores at 10-cm, 50-cm, 1-m, 5-m and 10-m distance were collected; with distances between sites and islands included (up to >700 km), the range of geographic distance examined covers over 7 orders of magnitude. For all samples, data on fundamental geochemical and OM factors, bacterial and fungal biomass, activity and diversity (via QPCR, extracellular enzyme potential assays and T-RFLP) are being collected. Covariance analysis is being used to evaluate the scale of maximum spatial heterogeneity in microbial structure and function, and ordination and matrix correlation analyses are being used to identify the key environmental covariates with heterogeneity. We hypothesize that heterogeneity at small (cm) scales will reflect predominant geochemical controls, at medium (m) scales will reflect predominant OM (vegetation) controls and at large (km) scales will reflect dispersal-related controls on microbial community structure and function.

Restore McComas Meadows; Meadow Creek Watershed, 2005-2006 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McRoberts, Heidi

2006-07-01

The Nez Perce Tribe Department of Fisheries Resource Management, Watershed Division approaches watershed restoration with a ridge-top to ridge-top approach. Watershed restoration projects within the Meadow Creek watershed are coordinated and cost shared with the Nez Perce National Forest. The Nez Perce Tribe began watershed restoration projects within the Meadow Creek watershed of the South Fork Clearwater River in 1996. Progress has been made in restoring the watershed by excluding cattle from critical riparian areas through fencing, planting trees in riparian areas within the meadow and its tributaries, prioritizing culverts for replacement to accommodate fish passage, and decommissioning roads tomore » reduce sediment input. During this contract period work was completed on two culvert replacement projects; Doe Creek and a tributary to Meadow Creek. Additionally construction was also completed for the ditch restoration project within McComas Meadows. Monitoring for project effectiveness and trends in watershed conditions was also completed. Road decommissioning monitoring, as well as stream temperature, sediment, and discharge were completed.« less

Habitat characteristics provide insights of carbon storage in seagrass meadows.

PubMed

Mazarrasa, Inés; Samper-Villarreal, Jimena; Serrano, Oscar; Lavery, Paul S; Lovelock, Catherine E; Marbà, Núria; Duarte, Carlos M; Cortés, Jorge

2018-02-16

Seagrass meadows provide multiple ecosystem services, yet they are among the most threatened ecosystems on earth. Because of their role as carbon sinks, protection and restoration of seagrass meadows contribute to climate change mitigation. Blue Carbon strategies aim to enhance CO 2 sequestration and avoid greenhouse gasses emissions through the management of coastal vegetated ecosystems, including seagrass meadows. The implementation of Blue Carbon strategies requires a good understanding of the habitat characteristics that influence C org sequestration. Here, we review the existing knowledge on Blue Carbon research in seagrass meadows to identify the key habitat characteristics that influence C org sequestration in seagrass meadows, those factors that threaten this function and those with unclear effects. We demonstrate that not all seagrass habitats have the same potential, identify research priorities and describe the implications of the results found for the implementation and development of efficient Blue Carbon strategies based on seagrass meadows. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effects of speckle/pixel size ratio on temporal and spatial speckle-contrast analysis of dynamic scattering systems: Implications for measurements of blood-flow dynamics.

PubMed

Ramirez-San-Juan, J C; Mendez-Aguilar, E; Salazar-Hermenegildo, N; Fuentes-Garcia, A; Ramos-Garcia, R; Choi, B

2013-01-01

Laser Speckle Contrast Imaging (LSCI) is an optical technique used to generate blood flow maps with high spatial and temporal resolution. It is well known that in LSCI, the speckle size must exceed the Nyquist criterion to maximize the speckle's pattern contrast. In this work, we study experimentally the effect of speckle-pixel size ratio not only in dynamic speckle contrast, but also on the calculation of the relative flow speed for temporal and spatial analysis. Our data suggest that the temporal LSCI algorithm is more accurate at assessing the relative changes in flow speed than the spatial algorithm.

Digital Speckle Photography of Subpixel Displacements of Speckle Structures Based on Analysis of Their Spatial Spectra

NASA Astrophysics Data System (ADS)

Maksimova, L. A.; Ryabukho, P. V.; Mysina, N. Yu.; Lyakin, D. V.; Ryabukho, V. P.

2018-04-01

We have investigated the capabilities of the method of digital speckle interferometry for determining subpixel displacements of a speckle structure formed by a displaceable or deformable object with a scattering surface. An analysis of spatial spectra of speckle structures makes it possible to perform measurements with a subpixel accuracy and to extend the lower boundary of the range of measurements of displacements of speckle structures to the range of subpixel values. The method is realized on the basis of digital recording of the images of undisplaced and displaced speckle structures, their spatial frequency analysis using numerically specified constant phase shifts, and correlation analysis of spatial spectra of speckle structures. Transformation into the frequency range makes it possible to obtain quantities to be measured with a subpixel accuracy from the shift of the interference-pattern minimum in the diffraction halo by introducing an additional phase shift into the complex spatial spectrum of the speckle structure or from the slope of the linear plot of the function of accumulated phase difference in the field of the complex spatial spectrum of the displaced speckle structure. The capabilities of the method have been investigated in natural experiment.

Welcome mats? The role of seagrass meadow structure in controlling post-settlement survival in a keystone sea-urchin species

NASA Astrophysics Data System (ADS)

Prado, Patricia; Romero, Javier; Alcoverro, Teresa

2009-11-01

Processes acting on the early-life histories of marine organisms can have important consequences for the structuring of benthic communities. In particular, the degree of coupling between larval supply and adult abundances can wield considerable influence on the strength of trophic interactions in the ecosystem. These processes have been relatively well described in rocky systems and soft-sediment communities, and it is clear that they are governed by very different bottlenecks. Seagrass meadows make interesting study systems because they bear structural affinities to both soft sediments as well as rocky substrates. We examined the early-life history of Paracentrotus lividus, one of the dominant herbivores in Mediterranean seagrass meadows, to identify the drivers of population dynamics in this species. We measured spatial and temporal variability in sea urchin post-settlement in 10 Posidonia oceanica meadows in the North-Western Mediterranean over a period of two years, and compared the numbers with the one-year old cohort a year later (i.e. the new population recruitment) as well as between successive size-age groups. Urchin post-settlers differed substantially between meadows but were present in both years in all meadows surveyed, suggesting that larval supply was not limiting for any of the studied sites. However, in six of the studied meadows, the one-year cohort of urchins was absent in both years, indicating that post-settlement processes strongly affected urchins in these meadows. In contrast, in four of the studied meadows, there was a strong coupling between post-settlers and one-year cohort individuals. These meadows were structurally different from the others in that they were characterised by an exposed matrix of rhizomes forming a dense seagrass mat. This mat apparently strongly mediates post-settlement mortality, and its presence or absence dictates the successful establishment of urchin populations in seagrass meadows. As the population aged, the relationship between size-age groups decreased evidencing the action of other processes. Yet, these results indicate that differences in physical structure are a vital bottleneck for sea urchin populations in seagrass meadows. Exploring the interaction between ecosystem structure and early-life history may provide a broader and more unified framework to understand the dynamics of a range of benthic habitats, including rocky substrates, soft sediments and seagrass meadows.

Assessing White Wine Viscosity Variation Using Polarized Laser Speckle: A Promising Alternative to Wine Sensory Analysis

PubMed Central

Abou Nader, Christelle; Loutfi, Hadi; Pellen, Fabrice; Le Jeune, Bernard; Le Brun, Guy; Lteif, Roger; Abboud, Marie

2017-01-01

In this paper, we report measurements of wine viscosity, correlated to polarized laser speckle results. Experiments were performed on white wine samples produced with a single grape variety. Effects of the wine making cellar, the grape variety, and the vintage on wine Brix degree, alcohol content, viscosity, and speckle parameters are considered. We show that speckle parameters, namely, spatial contrast and speckle decorrelation time, as well as the inertia moment extracted from the temporal history speckle pattern, are mainly affected by the alcohol and sugar content and hence the wine viscosity. Principal component analysis revealed a high correlation between laser speckle results on the one hand and viscosity and Brix degree values on the other. As speckle analysis proved to be an efficient method of measuring the variation of the viscosity of white mono-variety wine, one can therefore consider it as an alternative method to wine sensory analysis. PMID:29027936

Artificial submicron or nanometer speckle fabricating technique and electron microscope speckle photography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu Zhanwei; Xie Huimin; Fang Daining

2007-03-15

In this article, a novel artificial submicro- or nanometer speckle fabricating technique is proposed by taking advantage of submicro or nanometer particles. In the technique, submicron or nanometer particles were adhered to an object surface by using ultrasonic dispersing technique. The particles on the object surface can be regarded as submicro or nanometer speckle by using a scanning electronic microscope at a special magnification. In addition, an electron microscope speckle photography (EMSP) method is developed to measure in-plane submicron or nanometer deformation of the object coated with the artificial submicro or nanometer speckles. The principle of artificial submicro or nanometermore » speckle fabricating technique and the EMSP method are discussed in detail in this article. Some typical applications of this method are offered. The experimental results verified that the artificial submicro or nanometer speckle fabricating technique and EMSP method is feasible.« less

Assessing White Wine Viscosity Variation Using Polarized Laser Speckle: A Promising Alternative to Wine Sensory Analysis.

PubMed

Nader, Christelle Abou; Loutfi, Hadi; Pellen, Fabrice; Jeune, Bernard Le; Le Brun, Guy; Lteif, Roger; Abboud, Marie

2017-10-13

In this paper, we report measurements of wine viscosity, correlated to polarized laser speckle results. Experiments were performed on white wine samples produced with a single grape variety. Effects of the wine making cellar, the grape variety, and the vintage on wine Brix degree, alcohol content, viscosity, and speckle parameters are considered. We show that speckle parameters, namely, spatial contrast and speckle decorrelation time, as well as the inertia moment extracted from the temporal history speckle pattern, are mainly affected by the alcohol and sugar content and hence the wine viscosity. Principal component analysis revealed a high correlation between laser speckle results on the one hand and viscosity and Brix degree values on the other. As speckle analysis proved to be an efficient method of measuring the variation of the viscosity of white mono-variety wine, one can therefore consider it as an alternative method to wine sensory analysis.

Climate and landscape drive the pace and pattern of conifer encroachment into subalpine meadows.

PubMed

Lubetkin, Kaitlin C; Westerling, Anthony LeRoy; Kueppers, Lara M

2017-09-01

Mountain meadows have high biodiversity and help regulate stream water release following the snowmelt pulse. However, many meadows are experiencing woody plant encroachment, threatening these ecosystem services. While there have been field surveys of individual meadows and remote sensing-based landscape-scale studies of encroachment, what is missing is a broad-scale, ground-based study to understand common regional drivers, especially at high elevations, where land management has often played a less direct role. With this study, we ask: What are the climate and landscape conditions conducive to woody plant encroachment at the landscape scale, and how has historical climate variation affected tree recruitment in subalpine meadows over time? We measured density of encroaching trees across 340 subalpine meadows in the central Sierra Nevada, California, USA, and used generalized additive models (GAMs) to determine the relationship between landscape-scale patterns of encroachment and meadow environmental properties. We determined ages of trees in 30 survey meadows, used observed climate and GAMs to model the relationship between timing of recruitment and climate since the early 1900s, and extrapolated recruitment patterns into the future using downscaled climate scenarios. Encroachment was high among meadows with lodgepole pine (Pinus contorta Douglas ex Loudon var. murrayana (Balf.) Engelm.) in the immediate vicinity, at lower elevations, with physical conditions favoring strong soil drying, and with maximum temperatures above or below average. Climatic conditions during the year of germination were unimportant, with tree recruitment instead depending on a 3-yr seed production period prior to germination and a 6-yr seedling establishment period following germination. Recruitment was high when the seed production period had high snowpack, and when the seedling establishment period had warm summer maximum temperatures, high summer precipitation, and high snowpack. Applying our temporal model to downscaled output from four global climate models indicated that the average meadow will shift to forest by the end of the 21st century. Sierra Nevada meadow encroachment by conifers is ubiquitous and associated with climate conditions increasingly favorable for tree recruitment, which will lead to substantial changes in subalpine meadows and the ecosystem services they provide. © 2017 by the Ecological Society of America.

Photosynthetic activity buffers ocean acidification in seagrass meadows

NASA Astrophysics Data System (ADS)

Hendriks, I. E.; Olsen, Y. S.; Ramajo, L.; Basso, L.; Steckbauer, A.; Moore, T. S.; Howard, J.; Duarte, C. M.

2013-07-01

Macrophytes growing in shallow coastal zones characterized by intense metabolic activity have the capacity to modify pH within their canopy and beyond. We observed diel pH ranges is in shallow (5-12 m) seagrass (Posidonia oceanica) meadows from 0.06 pH units in September to 0.24 units in June. The carbonate system (pH, DIC, and aragonite saturation state (ΩAr) and O2 within the meadows displayed strong diel variability driven by primary productivity, and changes in chemistry were related to structural parameters of the meadow, in particular, the leaf surface area available for photosynthesis (LAI). LAI was positively correlated to mean and max pHNBS and max ΩAr. Oxygen production positively influenced the range and maximum pHNBS and the range of ΩAr. In June, vertical mixing (as Turbulent Kinetic Energy) influenced ΩAr, while in September there was no effect of hydrodynamics on the carbonate system within the canopy. ΩAr was positively correlated with the calcium carbonate load of the leaves, demonstrating a direct link between structural parameters, ΩAr and carbonate deposition. There was a direct relationship between ΩAr, influenced directly by meadow LAI, and CaCO3 content of the leaves. Therefore, calcifying organisms, e.g. epiphytes with carbonate skeletons, might benefit from the modification of the carbonate system by the meadow. The meadow might be capable of providing refugia for calcifiers by increasing pH and ΩAr through metabolic activity. There is, however, concern for the ability of seagrasses to provide this refugia function in the future. The predicted decline of seagrass meadows may alter the scope for alteration of pH within a seagrass meadow and in the water column above the meadow, particularly if shoot density and biomass decline, both strongly linked to LAI. Organisms associated with seagrass communities may therefore suffer from the loss of pH buffering capacity in degraded meadows.

Photosynthetic activity buffers ocean acidification in seagrass meadows

NASA Astrophysics Data System (ADS)

Hendriks, I. E.; Olsen, Y. S.; Ramajo, L.; Basso, L.; Steckbauer, A.; Moore, T. S.; Howard, J.; Duarte, C. M.

2014-01-01

Macrophytes growing in shallow coastal zones characterised by intense metabolic activity have the capacity to modify pH within their canopy and beyond. We observed diel pH changes in shallow (5-12 m) seagrass (Posidonia oceanica) meadows spanning 0.06 pH units in September to 0.24 units in June. The carbonate system (pH, DIC, and aragonite saturation state (ΩAr)) and O2 within the meadows displayed strong diel variability driven by primary productivity, and changes in chemistry were related to structural parameters of the meadow, in particular, the leaf surface area available for photosynthesis (LAI). LAI was positively correlated to mean, max and range pHNBS and max and range ΩAr. In June, vertical mixing (as Turbulent Kinetic Energy) influenced max and min ΩAr, while in September there was no effect of hydrodynamics on the carbonate system within the canopy. Max and range ΩAr within the meadow showed a positive trend with the calcium carbonate load of the leaves, pointing to a possible link between structural parameters, ΩAr and carbonate deposition. Calcifying organisms, e.g. epiphytes with carbonate skeletons, may benefit from the modification of the carbonate system by the meadow. There is, however, concern for the ability of seagrasses to provide modifications of similar importance in the future. The predicted decline of seagrass meadows may alter the scope for alteration of pH within a seagrass meadow and in the water column above the meadow, particularly if shoot density and biomass decline, on which LAI is based. Organisms associated with seagrass communities may therefore suffer from the loss of pH buffering capacity in degraded meadows.

Full-field 3D deformation measurement: comparison between speckle phase and displacement evaluation.

PubMed

Khodadad, Davood; Singh, Alok Kumar; Pedrini, Giancarlo; Sjödahl, Mikael

2016-09-20

The objective of this paper is to describe a full-field deformation measurement method based on 3D speckle displacements. The deformation is evaluated from the slope of the speckle displacement function that connects the different reconstruction planes. For our experiment, a symmetrical arrangement with four illuminations parallel to the planes (x,z) and (y,z) was used. Four sets of speckle patterns were sequentially recorded by illuminating an object from the four directions, respectively. A single camera is used to record the holograms before and after deformations. Digital speckle photography is then used to calculate relative speckle displacements in each direction between two numerically propagated planes. The 3D speckle displacements vector is calculated as a combination of the speckle displacements from the holograms recorded in each illumination direction. Using the speckle displacements, problems associated with rigid body movements and phase wrapping are avoided. In our experiment, the procedure is shown to give the theoretical accuracy of 0.17 pixels yielding the accuracy of 2×10^-3 in the measurement of deformation gradients.

Divergent Impacts of Two Cattle Types on Vegetation in Coastal Meadows: Implications for Management

NASA Astrophysics Data System (ADS)

Laurila, Marika; Huuskonen, Arto; Pesonen, Maiju; Kaseva, Janne; Joki-Tokola, Erkki; Hyvärinen, Marko

2015-11-01

The proportion of beef cattle in relation to the total number of cattle has increased in Europe, which has led to a higher contribution of beef cattle in the management of semi-natural grasslands. Changes in vegetation caused by this change in grazers are virtually unexplored so far. In the present study, the impacts of beef and dairy cattle on vegetation structure and composition were compared on Bothnian Bay coastal meadows. Vegetation parameters were measured in seven beef cattle, six dairy heifer pastures, and in six unmanaged meadows. Compared to unmanaged meadows, vegetation in grazed meadows was significantly lower in height and more frequently colonized by low-growth species. As expected, vegetation grazed by beef cattle was more open than that on dairy heifer pastures where litter cover and proportion of bare ground were in the same level as in the unmanaged meadows. However, the observed differences may have in part arisen from the higher cattle densities in coastal meadows grazed by beef cattle than by dairy heifers. The frequencies of different species groups and the species richness values of vegetation did not differ between the coastal meadows grazed by the two cattle types. One reason for this may be the relatively short management history of the studied pastures. The potential differences in grazing impacts of the two cattle types on vegetation structure can be utilized in the management of coastal meadows for species with divergent habitat requirements.

Response of mountain meadows to grazing by recreational pack stock

USGS Publications Warehouse

Cole, David N.; Van Wagtendonk, Jan W.; McClaran, Mitchel P.; Moore, Peggy E.; McDougald, Neil K.

2004-01-01

Effects of recreational pack stock grazing on mountain meadows in Yosemite National Park were assessed in a 5-year study. Yosemite is a designated wilderness, to be managed such that its natural conditions are preserved. Studies were conducted in 3 characteristic meadow types: shorthair sedge (Carex filifolia Nutt.), Brewer's reed grass (Calamagrostis breweri Thurber), and tufted hairgrass [Deschampsia cespitosa (L.) Beauv.]. Horses and mules grazed experimental plots at intensities of 15 to 69% utilization for 4 seasons. In all 3 meadows, grazing caused decreases in productivity. The mean reduction after 4 years of grazing was 18% in the shorthair sedge meadow, 17% in the Brewer's reed grass meadow, and 22% in the tufted hairgrass meadow. Grazing also caused shifts in basal groundcover (usually a reduction in vegetation cover and increase in bare soil cover), and changes in species composition. Productivity and vegetation cover decreased as percent utilization increased, while bare soil cover increased as utilization increased. Changes in species composition were less predictably related to differences in grazing intensity. Passive management of grazing is insufficient in wilderness areas that are regularly used by groups with recreational stock. Wilderness managers need to monitor meadow conditions and the grazing intensities that occur. Our study suggests that biomass and ground cover are more sensitive indicators of grazing impact than species composition. Managers must make decisions about maximum acceptable levels of grazing impact and then develop guidelines for maximum use levels, based on data such as ours that relates grazing intensity to meadow response.

Pixel-based speckle adjustment for noise reduction in Fourier-domain OCT images.

PubMed

Zhang, Anqi; Xi, Jiefeng; Sun, Jitao; Li, Xingde

2017-03-01

Speckle resides in OCT signals and inevitably effects OCT image quality. In this work, we present a novel method for speckle noise reduction in Fourier-domain OCT images, which utilizes the phase information of complex OCT data. In this method, speckle area is pre-delineated pixelwise based on a phase-domain processing method and then adjusted by the results of wavelet shrinkage of the original image. Coefficient shrinkage method such as wavelet or contourlet is applied afterwards for further suppressing the speckle noise. Compared with conventional methods without speckle adjustment, the proposed method demonstrates significant improvement of image quality.

Speckles in interstellar radio-wave scattering

NASA Technical Reports Server (NTRS)

Desai, K. M.; Gwinn, C. R.; Reynolds, J.; King, E. A.; Jauncey, D.; Nicholson, G.; Flanagan, C.; Preston, R. A.; Jones, D. L.

1991-01-01

Observations of speckles in the scattering disk of the Vela pulsar are presented and speckle techniques for studying and circumventing scattering of radio waves by the turbulent interstellar plasma are discussed. The speckle pattern contains, in a hologrammatic fashion, complete information on the structure of the radio source as well as the distribution of the scattering material. Speckle observations of interstellar scattering of radio waves are difficult because of their characteristically short timescales and narrow bandwidths. Here, first observations are presented, taken at 13 cm wavelength with elements of the SHEVE VLBI network, of speckles in interstellar scattering.

Statistics on gene-based laser speckles with a small number of scatterers: implications for the detection of polymorphism in the Chlamydia trachomatis omp1 gene

NASA Astrophysics Data System (ADS)

Ulyanov, Sergey S.; Ulianova, Onega V.; Zaytsev, Sergey S.; Saltykov, Yury V.; Feodorova, Valentina A.

2018-04-01

The transformation mechanism for a nucleotide sequence of the Chlamydia trachomatis gene into a speckle pattern has been considered. The first and second-order statistics of gene-based speckles have been analyzed. It has been demonstrated that gene-based speckles do not obey Gaussian statistics and belong to the class of speckles with a small number of scatterers. It has been shown that gene polymorphism can be easily detected through analysis of the statistical characteristics of gene-based speckles.

Legal protection is not enough: Posidonia oceanica meadows in marine protected areas are not healthier than those in unprotected areas of the northwest Mediterranean Sea.

PubMed

Montefalcone, Monica; Albertelli, Giancarlo; Morri, Carla; Parravicini, Valeriano; Bianchi, Carlo Nike

2009-04-01

Using the Conservation Index, which measures the proportional amount of dead matte relative to live Posidonia oceanica, we assessed the health of 15 P. oceanica meadows at a regional scale along the coast of Liguria (NW Mediterranean). These areas were characterized by different degrees of anthropization, from highly urbanized sites to marine protected areas. Two different scenarios were identified according to depth: in shallow zones, the health of P. oceanica meadows was related to the degree of anthropization along the coastline. In contrast, in deep zones, most meadows exhibited poor health, independent of both the degree of disturbance and the legal measures protecting the area. Working synergistically with the regional impact of increased water turbidity, local impacts from the coast were recognized as the main causes of the severe regression of most Ligurian P. oceanica meadows. We conclude that marine protected areas alone are not sufficient to guarantee the protection of P. oceanica meadows. We emphasize the need for a management network involving the Sites of Community Interest (SCIs) containing P. oceanica meadows.

Effect of incidence/observation angles and angular diversity on speckle reduction by wavelength diversity in laser projection systems.

PubMed

Yamada, Hirotaka; Moriyasu, Kengo; Sato, Hiroto; Hatanaka, Hidekazu

2017-12-11

The speckle reduction for laser projectors has been vigorously studied because speckle causes a serious deterioration in image quality. Most speckle reduction methods can be categorized into wavelength diversity, angular diversity and polarization diversity, which are usually treated independently. In this paper, it is shown that the effect of wavelength diversity and angular diversity on speckle reduction is not independent, and that the effect of wavelength also depends on incidence and observation angles on screen. The speckle reduction effect by wavelength diversity is smaller when the angular diversity is larger. Also, the speckle reduction effect is investigated on various screens including matte and silver screens, and it is shown that the effect of wavelength diversity is larger on matte screen than on silver screen.

A novel method for repeatedly generating speckle patterns used in digital image correlation

NASA Astrophysics Data System (ADS)

Zhang, Juan; Sweedy, Ahmed; Gitzhofer, François; Baroud, Gamal

2018-01-01

Speckle patterns play a key role in Digital Image Correlation (DIC) measurement, and generating an optimal speckle pattern has been the goal for decades now. The usual method of generating a speckle pattern is by manually spraying the paint on the specimen. However, this makes it difficult to reproduce the optimal pattern for maintaining identical testing conditions and achieving consistent DIC results. This study proposed and evaluated a novel method using an atomization system to repeatedly generate speckle patterns. To verify the repeatability of the speckle patterns generated by this system, simulation and experimental studies were systematically performed. The results from both studies showed that the speckle patterns and, accordingly, the DIC measurements become highly accurate and repeatable using the proposed atomization system.

Rayleigh-maximum-likelihood bilateral filter for ultrasound image enhancement.

PubMed

Li, Haiyan; Wu, Jun; Miao, Aimin; Yu, Pengfei; Chen, Jianhua; Zhang, Yufeng

2017-04-17

Ultrasound imaging plays an important role in computer diagnosis since it is non-invasive and cost-effective. However, ultrasound images are inevitably contaminated by noise and speckle during acquisition. Noise and speckle directly impact the physician to interpret the images and decrease the accuracy in clinical diagnosis. Denoising method is an important component to enhance the quality of ultrasound images; however, several limitations discourage the results because current denoising methods can remove noise while ignoring the statistical characteristics of speckle and thus undermining the effectiveness of despeckling, or vice versa. In addition, most existing algorithms do not identify noise, speckle or edge before removing noise or speckle, and thus they reduce noise and speckle while blurring edge details. Therefore, it is a challenging issue for the traditional methods to effectively remove noise and speckle in ultrasound images while preserving edge details. To overcome the above-mentioned limitations, a novel method, called Rayleigh-maximum-likelihood switching bilateral filter (RSBF) is proposed to enhance ultrasound images by two steps: noise, speckle and edge detection followed by filtering. Firstly, a sorted quadrant median vector scheme is utilized to calculate the reference median in a filtering window in comparison with the central pixel to classify the target pixel as noise, speckle or noise-free. Subsequently, the noise is removed by a bilateral filter and the speckle is suppressed by a Rayleigh-maximum-likelihood filter while the noise-free pixels are kept unchanged. To quantitatively evaluate the performance of the proposed method, synthetic ultrasound images contaminated by speckle are simulated by using the speckle model that is subjected to Rayleigh distribution. Thereafter, the corrupted synthetic images are generated by the original image multiplied with the Rayleigh distributed speckle of various signal to noise ratio (SNR) levels and added with Gaussian distributed noise. Meanwhile clinical breast ultrasound images are used to visually evaluate the effectiveness of the method. To examine the performance, comparison tests between the proposed RSBF and six state-of-the-art methods for ultrasound speckle removal are performed on simulated ultrasound images with various noise and speckle levels. The results of the proposed RSBF are satisfying since the Gaussian noise and the Rayleigh speckle are greatly suppressed. The proposed method can improve the SNRs of the enhanced images to nearly 15 and 13 dB compared with images corrupted by speckle as well as images contaminated by speckle and noise under various SNR levels, respectively. The RSBF is effective in enhancing edge while smoothing the speckle and noise in clinical ultrasound images. In the comparison experiments, the proposed method demonstrates its superiority in accuracy and robustness for denoising and edge preserving under various levels of noise and speckle in terms of visual quality as well as numeric metrics, such as peak signal to noise ratio, SNR and root mean squared error. The experimental results show that the proposed method is effective for removing the speckle and the background noise in ultrasound images. The main reason is that it performs a "detect and replace" two-step mechanism. The advantages of the proposed RBSF lie in two aspects. Firstly, each central pixel is classified as noise, speckle or noise-free texture according to the absolute difference between the target pixel and the reference median. Subsequently, the Rayleigh-maximum-likelihood filter and the bilateral filter are switched to eliminate speckle and noise, respectively, while the noise-free pixels are unaltered. Therefore, it is implemented with better accuracy and robustness than the traditional methods. Generally, these traits declare that the proposed RSBF would have significant clinical application.

Speckle patterns produced by an optical vortex and its application to surface roughness measurements.

PubMed

Passos, M H M; Lemos, M R; Almeida, S R; Balthazar, W F; da Silva, L; Huguenin, J A O

2017-01-10

In this work, we report on the analysis of speckle patterns produced by illuminating different rough surfaces with an optical vortex, a first-order (l=1) Laguerre-Gaussian beam. The generated speckle patterns were observed in the normal direction exploring four different planes: the diffraction plane, image plane, focal plane, and exact Fourier transform plane. The digital speckle patterns were analyzed using the Hurst exponent of digital images, an interesting tool used to study surface roughness. We show a proof of principle that the Hurst exponent of a digital speckle pattern is more sensitive with respect to the surface roughness when the speckle pattern is produced by an optical vortex and observed at a focal plane. We also show that Hurst exponents are not so sensitive with respect to the topological charge l. These results open news possibilities of investigation into speckle metrology once we have several techniques that use speckle patterns for different applications.

Pixel-based speckle adjustment for noise reduction in Fourier-domain OCT images

PubMed Central

Zhang, Anqi; Xi, Jiefeng; Sun, Jitao; Li, Xingde

2017-01-01

Speckle resides in OCT signals and inevitably effects OCT image quality. In this work, we present a novel method for speckle noise reduction in Fourier-domain OCT images, which utilizes the phase information of complex OCT data. In this method, speckle area is pre-delineated pixelwise based on a phase-domain processing method and then adjusted by the results of wavelet shrinkage of the original image. Coefficient shrinkage method such as wavelet or contourlet is applied afterwards for further suppressing the speckle noise. Compared with conventional methods without speckle adjustment, the proposed method demonstrates significant improvement of image quality. PMID:28663860

Visual based laser speckle pattern recognition method for structural health monitoring

NASA Astrophysics Data System (ADS)

Park, Kyeongtaek; Torbol, Marco

2017-04-01

This study performed the system identification of a target structure by analyzing the laser speckle pattern taken by a camera. The laser speckle pattern is generated by the diffuse reflection of the laser beam on a rough surface of the target structure. The camera, equipped with a red filter, records the scattered speckle particles of the laser light in real time and the raw speckle image of the pixel data is fed to the graphic processing unit (GPU) in the system. The algorithm for laser speckle contrast analysis (LASCA) computes: the laser speckle contrast images and the laser speckle flow images. The k-mean clustering algorithm is used to classify the pixels in each frame and the clusters' centroids, which function as virtual sensors, track the displacement between different frames in time domain. The fast Fourier transform (FFT) and the frequency domain decomposition (FDD) compute the modal properties of the structure: natural frequencies and damping ratios. This study takes advantage of the large scale computational capability of GPU. The algorithm is written in Compute Unifies Device Architecture (CUDA C) that allows the processing of speckle images in real time.

Correlation of Spatially Filtered Dynamic Speckles in Distance Measurement Application

DOE Office of Scientific and Technical Information (OSTI.GOV)

Semenov, Dmitry V.; Nippolainen, Ervin; Kamshilin, Alexei A.

2008-04-15

In this paper statistical properties of spatially filtered dynamic speckles are considered. This phenomenon was not sufficiently studied yet while spatial filtering is an important instrument for speckles velocity measurements. In case of spatial filtering speckle velocity information is derived from the modulation frequency of filtered light power which is measured by photodetector. Typical photodetector output is represented by a narrow-band random noise signal which includes non-informative intervals. Therefore more or less precious frequency measurement requires averaging. In its turn averaging implies uncorrelated samples. However, conducting research we found that correlation is typical property not only of dynamic speckle patternsmore » but also of spatially filtered speckles. Using spatial filtering the correlation is observed as a response of measurements provided to the same part of the object surface or in case of simultaneously using several adjacent photodetectors. Found correlations can not be explained using just properties of unfiltered dynamic speckles. As we demonstrate the subject of this paper is important not only from pure theoretical point but also from the point of applied speckle metrology. E.g. using single spatial filter and an array of photodetector can greatly improve accuracy of speckle velocity measurements.« less

Speckle-learning-based object recognition through scattering media.

PubMed

Ando, Takamasa; Horisaki, Ryoichi; Tanida, Jun

2015-12-28

We experimentally demonstrated object recognition through scattering media based on direct machine learning of a number of speckle intensity images. In the experiments, speckle intensity images of amplitude or phase objects on a spatial light modulator between scattering plates were captured by a camera. We used the support vector machine for binary classification of the captured speckle intensity images of face and non-face data. The experimental results showed that speckles are sufficient for machine learning.

Speckle reduction in laser projection displays through angle and wavelength diversity.

PubMed

Tran, Trinh-Thi-Kim; Svensen, Øyvind; Chen, Xuyuan; Akram, Muhammad Nadeem

2016-02-20

Speckle is the main obstacle for the use of laser light sources in projection technology. This paper focuses on speckle suppression by the reduction of temporal coherence which is provided by the broadband laser light. The investigation of the effect of laser spectrum width and multiple lasers on speckle contrast is discussed. A broader spectrum width of the laser light is attained by the use of multiple semiconductor laser diodes of the broad area type. Measurements of speckle contrast with and without angle diversity are performed for two and four laser diodes. The measurement of speckle contrast for a single laser diode is also presented for comparison. The experimental results show that multiple laser diodes provide lower speckle contrast as compared to a single laser diode. In addition, it is also shown in this paper that the wavelength distribution of independent laser diodes has an effect on speckle contrast. Two different types of blue laser diodes, Nichia NUB802T and Nichia NUB801E, which have slightly different central wavelengths, were used for the measurements. Four laser diodes with a combination of two types of laser diodes offer better speckle contrast reduction than four laser diodes of the same type due to an effective broader spectrum. Additional speckle contrast reduction is achieved through the angle diversity by using a dynamic deformable mirror.

FACTORS AFFECTING CARBON ACCUMULATION IN NEW ENGLAND EELGRASS MEADOWS

EPA Science Inventory

As atmospheric and oceanic concentrations of carbon dioxide continue to increase, quantifying the carbon storage potential of seagrass meadows and improving the understanding of the factors controlling carbon sequestration in seagrass meadows is essential information for decision...

Quantification of carbon accumulation in eleven New England eelgrass meadows

EPA Science Inventory

As atmospheric and oceanic concentrations of carbon dioxide continue to increase, quantifying the carbon storage potential of seagrass meadows and improving the understanding of the factors controlling carbon sequestration in seagrass meadows is essential information for decision...

Speckle Noise in Highly Corrected Coronagraphs

NASA Technical Reports Server (NTRS)

Bloemhof, Eric E.

2004-01-01

Speckles in a highly corrected adaptive optic imaging system have been studied through numerical simulations and through analytic and algebraic investigations of the Fourier-optical expressions connecting pupil plane and focal plane, which simplify at high Strehl ratio. Significant insights into the behavior of speckles, and the speckle noise caused when they vary over time, have thus been gained. Such speckle noise is expected to set key limits on the sensitivity of searches for companions around other stars, including extrasolar planets. In most cases, it is advantageous to use a coronagraph of some kind to suppress the bright primary star and so enhance the dynamic range of companion searches. In the current paper, I investigate speckle behavior and its impact on speckle noise in some common coronagraphic architectures, including the classical Lyot coronagraph and the new four quadrant phase mask (FQPM) concept.

Real-time speckle reduction in optical coherence tomography using the dual window method.

PubMed

Zhao, Yang; Chu, Kengyeh K; Eldridge, Will J; Jelly, Evan T; Crose, Michael; Wax, Adam

2018-02-01

Speckle is an intrinsic noise of interferometric signals which reduces contrast and degrades the quality of optical coherence tomography (OCT) images. Here, we present a frequency compounding speckle reduction technique using the dual window (DW) method. Using the DW method, speckle noise is reduced without the need to acquire multiple frames. A ~25% improvement in the contrast-to-noise ratio (CNR) was achieved using the DW speckle reduction method with only minimal loss (~17%) in axial resolution. We also demonstrate that real-time speckle reduction can be achieved at a B-scan rate of ~21 frames per second using a graphic processing unit (GPU). The DW speckle reduction technique can work on any existing OCT instrument without further system modification or extra components. This makes it applicable both in real-time imaging systems and during post-processing.

Spatial filtering velocimetry of objective speckles for measuring out-of-plane motion.

PubMed

Jakobsen, M L; Yura, H T; Hanson, S G

2012-03-20

This paper analyzes the dynamics of objective laser speckles as the distance between the object and the observation plane continuously changes. With the purpose of applying optical spatial filtering velocimetry to the speckle dynamics, in order to measure out-of-plane motion in real time, a rotational symmetric spatial filter is designed. The spatial filter converts the speckle dynamics into a photocurrent with a quasi-sinusoidal response to the out-of-plane motion. The spatial filter is here emulated with a CCD camera, and is tested on speckles arising from a real application. The analysis discusses the selectivity of the spatial filter, the nonlinear response between speckle motion and observation distance, and the influence of the distance-dependent speckle size. Experiments with the emulated filters illustrate performance and potential applications of the technology. © 2012 Optical Society of America

Anthropogenic Disturbance of Montane Meadows May Cause Substantial Loss of Soil Carbon to the Atmosphere

NASA Astrophysics Data System (ADS)

Reed, C. C.; Sullivan, B. W.; Hart, S. C.; Drew, M.; Merrill, A.

2016-12-01

High-elevation meadows are biological hotspots that contain high densities of soil carbon (C). The capacity of these ecosystems to sequester C depends on a combination of high primary productivity, seasonally low temperatures, and anaerobic soil conditions associated with water tables at or near the soil surface. However, anthropogenic disturbances in many montane meadows in California's Sierra Nevada have lowered water tables, decreased primary productivity, and created aerobic soil conditions - changes that may alter the balance of greenhouse gas (GHG) emissions and reverse meadows from a net C sink to a net source. Recently, C policy in California has spurred interest in the potential of hydrologic restoration to increase C sequestration in meadows. However, soil C pools and fluxes in degraded meadows must be quantified before the impacts of restoration can accurately be assessed. In this study, we measured soil C stocks in surface soil (1 m) and annual soil GHG fluxes (carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O)) in three degraded, northern Sierra Nevada meadows. In a parallel laboratory incubation, we manipulated meadow soil water content to determine target goals for restoration of anaerobic conditions. Our results suggest that degraded meadows contain large reservoirs of existing C, but that this C may be vulnerable to decomposition under current conditions. Soil CO2 fluxes ranged from 26.7-33.1 Mg of CO2 ha-1 y-1, roughly equivalent to the amount of C sequestered annually by 70 acres of U.S. forests. These high rates of soil respiration, combined with low primary productivity, resulted in substantial losses of soil C with implications for climate change, ecosystem function, and restoration. Soils from these meadows were a net source of N2O and a net sink of CH4, but these fluxes were 4 orders of magnitude smaller than CO2. Also, we found substantial GHG emissions persist in these organic soils at peak soil moisture, suggesting that restoration may need to sustain soil water holding capacities in excess of 115%, and possibly 200%, for anaerobic soil conditions to return. These findings highlight the need to conserve properly functioning meadows and provide target conditions for optimal restoration of degraded meadows.

Effects of red blood cell aggregates dissociation on the estimation of ultrasound speckle image velocimetry.

PubMed

Yeom, Eunseop; Nam, Kweon-Ho; Paeng, Dong-Guk; Lee, Sang-Joon

2014-08-01

Ultrasound speckle image of blood is mainly attributed by red blood cells (RBCs) which tend to form RBC aggregates. RBC aggregates are separated into individual cells when the shear force is over a certain value. The dissociation of RBC aggregates has an influence on the performance of ultrasound speckle image velocimetry (SIV) technique in which a cross-correlation algorithm is applied to the speckle images to get the velocity field information. The present study aims to investigate the effect of the dissociation of RBC aggregates on the estimation quality of SIV technique. Ultrasound B-mode images were captured from the porcine blood circulating in a mock-up flow loop with varying flow rate. To verify the measurement performance of SIV technique, the centerline velocity measured by the SIV technique was compared with that measured by Doppler spectrograms. The dissociation of RBC aggregates was estimated by using decorrelation of speckle patterns in which the subsequent window was shifted as much as the speckle displacement to compensate decorrelation caused by in-plane loss of speckle patterns. The decorrelation of speckles is considerably increased according to shear rate. Its variations are different along the radial direction. Because the dissociation of RBC aggregates changes ultrasound speckles, the estimation quality of SIV technique is significantly correlated with the decorrelation of speckles. This degradation of measurement quality may be improved by increasing the data acquisition rate. This study would be useful for simultaneous measurement of hemodynamic and hemorheological information of blood flows using only speckle images. Copyright © 2014 Elsevier B.V. All rights reserved.

Reflectance Speckle of Retinal Nerve Fiber Layer Reveals Axonal Activity

PubMed Central

Huang, Xiang-Run; Knighton, Robert W.; Zhou, Ye; Zhao, Xiao-Peng

2013-01-01

Purpose. This study investigated the retinal nerve fiber layer (RNFL) reflectance speckle and tested the hypothesis that temporal change of RNFL speckle reveals axonal dynamic activity. Methods. RNFL reflectance speckle of isolated rat retinas was studied with monochromatic illumination. A series of reflectance images was collected every 5 seconds for approximately 15 minutes. Correlation coefficients (CC) of selected areas between a reference and subsequent images were calculated and plotted as a function of the time intervals between images. An exponential function fit to the time course was used to evaluate temporal change of speckle pattern. To relate temporal change of speckle to axonal activity, in vitro living retina perfused at a normal (34°C) and a lower (24°C) temperature, paraformaldehyde-fixed retina, and retina treated with microtubule depolymerization were used. Results. RNFL reflectance was not uniform; rather nerve fiber bundles had a speckled texture that changed with time. In normally perfused retina, the time constant of the CC change was 0.56 ± 0.26 minutes. In retinas treated with lower temperature and microtubule depolymerization, the time constants increased by two to four times, indicating that the speckle pattern changed more slowly. The speckled texture in fixed retina was stationary. Conclusions. Fixation stops axonal activity; treatments with either lower temperature or microtubule depolymerization are known to decrease axonal transport. The results obtained in this study suggest that temporal change of RNFL speckle reveals structural change due to axonal activity. Assessment of RNFL reflectance speckle may offer a new means of evaluating axonal function. PMID:23532525

Speckle-modulation for speckle reduction in optical coherence tomography

NASA Astrophysics Data System (ADS)

Liba, Orly; Lew, Matthew D.; SoRelle, Elliott D.; Dutta, Rebecca; Sen, Debasish; Moshfeghi, Darius M.; Chu, Steven; de la Zerda, Adam

2018-02-01

Optical coherence tomography (OCT) is a powerful biomedical imaging technology that relies on the coherent detection of backscattered light to image tissue morphology in vivo. As a consequence, OCT is susceptible to coherent noise, known as speckle noise, which imposes significant limitations on its diagnostic capabilities. Here we show Speckle- Modulating OCT (SM-OCT), a method based purely on light manipulation, which can remove speckle noise, including noise originating from sample multiple back-scattering. SM-OCT accomplishes this by creating and averaging an unlimited number of scans with uncorrelated speckle patterns, without compromising spatial resolution. The uncorrelated speckle patterns are created by scrambling the phase of the light with sub-resolution features using a moving ground-glass diffuser in the optical path of the sample arm. This method can be implemented in existing OCTs as a relatively low-cost add-on. SM-OCT speckle statistics follow the expected decrease in speckle contrast as the number of averaged scans increases. Within a scattering phantom, SM-OCT provides a 2.5-fold increase in effective resolution compared to conventional OCT. Using SM-OCT, we reveal small structures in the tissues of living animals, such as the inner stromal structure of a live mouse cornea, the fine structures inside the mouse pinna, and sweat ducts and Meissner's corpuscle in the human fingertip skin - features that are otherwise obscured by speckle noise when using conventional OCT or OCT with current state of the art speckle reduction methods. Our results indicate that SM-OCT has the potential to improve the current diagnostic and intra-operative capabilities of OCT.

Method and system for enabling real-time speckle processing using hardware platforms

NASA Technical Reports Server (NTRS)

Ortiz, Fernando E. (Inventor); Kelmelis, Eric (Inventor); Durbano, James P. (Inventor); Curt, Peterson F. (Inventor)

2012-01-01

An accelerator for the speckle atmospheric compensation algorithm may enable real-time speckle processing of video feeds that may enable the speckle algorithm to be applied in numerous real-time applications. The accelerator may be implemented in various forms, including hardware, software, and/or machine-readable media.

A Comparison of Sedimentary Environments in an Alpine Meadow and the Influence on Groundwater Availability, Applying Near Surface Geophysical Methods.

NASA Astrophysics Data System (ADS)

Ayers, M.; Galvin, J. L.; Blacic, T. M.; Yarnell, S. M.; Craig, M. S.

2016-12-01

Meadows are recognized for their value to the ecological, hydrologic, and aesthetic functions of a watershed as they attenuate floods, improve water quality and support herbaceous vegetation, promoting high biodiversity. During the dry summer growing season, Alpine meadow complexes are dependent on timely groundwater distribution of winter precipitation preserved in snowpack, and are therefore highly vulnerable to altered seasonal precipitation patterns. Comprehensive understanding of groundwater flux that supports meadow reaches relies on knowledge of their complex stratigraphic and structural subsurface framework. Hydrogeophysics has emphasized the combination of near surface geophysical techniques to qualitatively define these parameters. Van Norden meadow located in the Donner Summit area west of Lake Tahoe, one of the largest sub-alpine meadows in the Sierra Nevada mountain range of Northern California, provides a natural hydrologic laboratory. Previous field campaigns in 2014 and 2015 collected GPR frequencies of 50, 100, and 270 MHz as well as electrical resistivity profiles to better define the groundwater table, sedimentary, and structural features. Where the previous field campaigns yielded cross-sections characterizing the meadow proper as fluvial, fine grained alluvial plain to coarser stream gravels, positioned over glacial till, the 2016 transects aim to cover the proto meadow, before the anthropogenic creation of a reservoir Lake Van Norden. To facilitate transfer of this area from a local land trust to the Forestry Service, a drain in the dam supporting Lake Van Norden was opened in 2016, greatly reducing the water volume, exposing a significant area of previously inundated land and decades of lakebed sediments that will allow us to ascertain thickness and distribution to the underlying glacial till. Lakebed sediment accounts for differential infiltration rates and as in other meadow sites there are most likely buried channels that influence groundwater introduction into the meadow. Resistivity lines from previous field campaigns will be revisited to track and compare the groundwater response in the upstream meadow reaches to the significant base level change. The GPR grid will be expanded as a first observation that may allow us to calculate changes in groundwater volume over time.

Factors influencing soil invertebrate communities in riparian grasslands of the central platte river floodplain

USGS Publications Warehouse

Davis, C.A.; Austin, J.E.; Buhl, D.A.

2006-01-01

In the Platte River Valley of central Nebraska, USA, riparian grasslands (also known as wet meadows) have been severely impacted by a reduction in river flows, causing lower ground-water levels and altered seasonal hydroperiods. The potential impacts of these hydrologic changes, as well as the environmental factors that influence wet meadow soil invertebrate communities, are not well understood. An understanding of the ecological processes that influence these invertebrate communities is crucial for maintaining and restoring wet meadows along the Platte River. Our objectives were to describe the soil invertebrate community of wet meadows throughout the growing season and to examine the relative roles of abiotic factors in determining patterns in invertebrate community structure. We conducted the study in 12 wet meadows along the Platte River during 1999 and 2000. We identified 73 invertebrate taxa; 39 were considered soil inhabitants. Total biomass was primarily composed of earthworms, Scarabaeidae, Isopoda, and Elateridae, with earthworms and Scarabaeidae accounting for >82%. Differences in river flow and precipitation patterns influenced some soil invertebrates. Earthworms and Scarabaeidae declined dramatically from 1999 (wet year) to 2000 (dry year). The topographic gradient created by the ridge-swale complex affected several soil invertebrate taxa; Scarabaeidae, Diplopoda, and Lepidoptera biomasses were greatest on drier ridges, while Tipulidae and Isopoda biomasscs were greatest in wetter sloughs. Responses of earthworm taxa to the topographic gradient were variable, but generally, greater biomasses occurred on ridges and mid-elevations. Water-table depth and soil moisture were the most important variables influencing wet meadow soil invertebrates. Because these communities are linked to the hydrologic processes of the Platte River, future alterations of wet meadow hydrology could shift the distribution patterns of many of these invertebrates and possibly eliminate more moisture-tolerant taxa. To maintain wet meadows and their biotic communities, flow management should focus on regaining as much as possible of the former hydrograph through properly timed flows that provide an adequate hydrologic regime for wet meadows. In addition, restoration of wet meadows will depend on restoring the natural topography of wet meadows. ?? 2006, The Society of Wetland Scientists.

Identification of subsurface microorganisms at Yucca Mountain. Quarterly report, July 1, 1995--September 30, 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stetzenbach, L.D.

1995-12-01

More than 1100 bacterial isolates were obtained over a two year period from 31 springs in a region along the southern boarder of California and Nevada. Water samples were collected from 17 springs in Ash Meadows National Wildlife Refuge and 14 springs in Death Valley National Park. Bacteria isolated from these samples were subjected to extraction and gas chromatography to determine the cellular fatty acid profile of each isolate. Fatty acid methyl esters (FAME) extracted from cell membranes were separated and classified using the Hewlett Packard by gas chromatography. The FAME profiles of each isolate were then subjected to clustermore » analysis by the unweighted pair-group method using arithmetic averages. During this quarter the relatedness of FAME patterns of bacterial isolates were examined at the genus level by counting the number of clusters produced in a MIDI dendrogram at a Euclidian distance of 25. This information was then used to determine microbiological relationships among springs.« less

Wet meadow ecosystems and the longevity of biologically-mediated geomorphic features

NASA Astrophysics Data System (ADS)

Nash, C.; Grant, G.; O'Connor, J. E.

2016-12-01

Upland meadows represent a ubiquitous feature of montane landscapes in the U.S. West and beyond. Characterized by flat valley floors flanked by higher-gradient hillslopes, these meadows are important features, both for the diverse ecosystems they support but also because they represent depositional features in what is primarily an erosional environment. As such, they serve as long-term chronometers of both geological and ecological processes in a portion of the landscape where such records are rare, and provide a useful microcosm for exploring many of the questions motivating critical zone science. Specifically, meadows can offer insights into questions regarding the longevity of theses biologically-mediated landscapes, and the geomorphic thresholds associated with transitions between metastable landscape states. Though categorically depositional, wet meadows have been shown to rapidly shift into erosional landscapes characterized by deep arroyos, declining water tables, and sparse, semi-arid ecosystems. Numerous hypotheses have been proposed explaining this shift: intensive ungulate usage, removal of beaver, climatic shifts, and intrinsic geomorphic evolution. Even less is known about the mechanisms controlling the construction of these meadow features. Evidence seems to suggest these channels oscillate between two metastable conditions: deeply incised, single-threaded channels and sheet-flow dominated valley-spanning wetlands. We present new evidence exploring the subsurface architecture of wet meadows and the bidirectional process cascades potentially responsible for their temporal evolution. Using a combination of near surface geophysical techniques and detailed stratigraphic descriptions of incised and un-incised meadows throughout the Silvies River Basin, OR, we examine mechanisms responsible both for the construction of these features and their apparently rapid transition from depositional to erosional. Our investigation focuses specifically on potential interactions between biogenic and geomorphic features and processes: beaver meadow complexes, downed wood, and the accumulation of senescent vegetation to form thick peat mounds. These observations have broad potential utility to help guide meadow restoration efforts across the Western U.S.

Cuticular waxes in alpine meadow plants: climate effect inferred from latitude gradient in Qinghai-Tibetan Plateau.

PubMed

Guo, Yanjun; Guo, Na; He, Yuji; Gao, Jianhua

2015-09-01

Alpine meadow ecosystems are susceptible to climate changes. Still, climate impact on cuticular wax in alpine meadow plants is poorly understood. Assessing the variations of cuticular wax in alpine meadow plants across different latitudes might be useful for predicting how they may respond to climate change. We studied nine alpine meadows in a climate gradient in the east side of Qinghai-Tibetan Plateau, with mean annual temperature ranging from -7.7 to 3.2°C. In total, 42 plant species were analyzed for cuticular wax, averaged 16 plant species in each meadow. Only four plant species could be observed in all sampling meadows, including Kobresia humilis,Potentilla nivea,Anaphalis lacteal, and Leontopodium nanum. The amounts of wax compositions and total cuticular wax in the four plant species varied among sampling meadows, but no significant correlation could be observed between them and temperature, precipitation, and aridity index based on plant species level. To analyze the variations of cuticular wax on community level, we averaged the amounts of n-alkanes, aliphatic acids, primary alcohols, and total cuticular wax across all investigated plant species in each sampling site. The mean annual temperature, mean temperature in July, and aridity index were significantly correlated with the averaged amounts of wax compositions and total cuticular wax. The average chain length of n-alkanes in both plant and soil linearly increased with increased temperature, whereas reduced with increased aridity index. No significant correlation could be observed between mean annual precipitation and mean precipitation from June to August and the cuticular wax amounts and average chain length. Our results suggest that the survival of some alpine plants in specific environments might be depended on their abilities in adjusting wax deposition on plant leaves, and the alpine meadow plants as a whole respond to climate change, benefiting the stability of alpine meadow ecosystem.

Restore McComas Meadows; Meadow Creek Watershed, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McRoberts, Heidi

2005-12-01

The Nez Perce Tribe Department of Fisheries Resource Management, Watershed Division approaches watershed restoration with a ridge-top to ridge-top approach. Watershed restoration projects within the Meadow Creek watershed are coordinated and cost shared with the Nez Perce National Forest. The Nez Perce Tribe began watershed restoration projects within the Meadow Creek watershed of the South Fork Clearwater River in 1996. Progress has been made in restoring the watershed by excluding cattle from critical riparian areas through fencing, planting trees in riparian areas within the meadow and its tributaries, prioritizing culverts for replacement to accommodate fish passage, and decommissioning roads tomore » reduce sediment input. During this contract period, bids were solicited and awarded for two culvert replacement projects on Doe Creek, and a tributary to Meadow Creek. Additionally, NEPA and permits were completed for the ditch restoration project within McComas Meadows. Due to delays in cultural resource surveys, the contract was not awarded for the performance of the ditch restoration. It will occur in 2005. Monitoring for project effectiveness and trends in watershed conditions was also completed. Road decommissioning monitoring, as well as stream temperature, sediment, and discharge were completed.« less

Methane emission by plant communities in an alpine meadow on the Qinghai-Tibetan Plateau: a new experimental study of alpine meadows and oat pasture.

PubMed

Wang, Shiping; Yang, Xiaoxia; Lin, Xingwu; Hu, Yigang; Luo, Caiyun; Xu, Guangping; Zhang, Zhenhua; Su, Ailing; Chang, Xiaofen; Chao, Zengguo; Duan, Jichuang

2009-08-23

Recently, plant-derived methane (CH(4)) emission has been questioned because limited evidence of the chemical mechanism has been identified to account for the process. We conducted an experiment with four treatments (i.e. winter-grazed, natural alpine meadow; naturally restored alpine meadow eight years after cultivation; oat pasture and bare soil without roots) during the growing seasons of 2007 and 2008 to examine the question of CH(4) emission by plant communities in the alpine meadow. Each treatment consumed CH(4) in closed, opaque chambers in the field, but two types of alpine meadow vegetation reduced CH(4) consumption compared with bare soil, whereas oat pasture increased consumption. This result could imply that meadow vegetation produces CH(4). However, measurements of soil temperature and water content showed significant differences between vegetated and bare soil and appeared to explain differences in CH(4) production between treatments. Our study strongly suggests that the apparent CH(4) production by vegetation, when compared with bare soil in some previous studies, might represent differences in soil temperature and water-filled pore space and not the true vegetation sources of CH(4).

Diel drift of Chironomidae larvae in a pristine Idaho mountain stream

USGS Publications Warehouse

Tilley, L.J.

1989-01-01

Simultaneous hourly net collections in a meadow and canyon reach of a mountain stream determined diel and spatial abundances of drifting Chironomidae larvae. Sixty-one taxa were identified to the lowest practical level, 52 in the meadow and 41 in the canyon. Orthocladiinae was the most abundant subfamily with 32 taxa and a 24 h mean density of 294 individuals 100 m-3 (meadow) and 26 taxa and a mean of 648 individuals 100 m-3 (canyon). Chironominae was the second most abundant subfamily. Nonchironomid invertebrates at both sites and total Chironomidae larvae (meadow) were predominantly night-drifting. Parakiefferiella and Psectrocladius were day-drifting (meadow) whereas 8 other chironomid taxa (meadow) and 2 taxa (canyon) were night-drifting. All others were aperiodic or too rare to test periodicity, Stempellinella cf brevis Edwards exhibited catastrophic drift in the canyon only. The different drift patterns between sites is attributed to greater loss of streambed habitat in the canyon compared to the meadow as streamflow decreased. Consequent crowding of chironomid larvae in the canyon caused catastrophic drift or interfered with drift periodicty. This study adds to knowledge of Chironomidae drift and shows influences on drift of hydrologic and geomorphic conditions. ?? 1989 Kluwer Academic Publishers.

Fundamental uncertainty limit for speckle displacement measurements.

PubMed

Fischer, Andreas

2017-09-01

The basic metrological task in speckle photography is to quantify displacements of speckle patterns, allowing for instance the investigation of the mechanical load and modification of objects with rough surfaces. However, the fundamental limit of the measurement uncertainty due to photon shot noise is unknown. For this reason, the Cramér-Rao bound (CRB) is derived for speckle displacement measurements, representing the squared minimal achievable measurement uncertainty. As result, the CRB for speckle patterns is only two times the CRB for an ideal point light source. Hence, speckle photography is an optimal measurement approach for contactless displacement measurements on rough surfaces. In agreement with a derivation from Heisenberg's uncertainty principle, the CRB depends on the number of detected photons and the diffraction limit of the imaging system described by the speckle size. The theoretical results are verified and validated, demonstrating the capability for displacement measurements with nanometer resolution.

Speckle lithography for fabricating Gaussian, quasi-random 2D structures and black silicon structures.

PubMed

Bingi, Jayachandra; Murukeshan, Vadakke Matham

2015-12-18

Laser speckle pattern is a granular structure formed due to random coherent wavelet interference and generally considered as noise in optical systems including photolithography. Contrary to this, in this paper, we use the speckle pattern to generate predictable and controlled Gaussian random structures and quasi-random structures photo-lithographically. The random structures made using this proposed speckle lithography technique are quantified based on speckle statistics, radial distribution function (RDF) and fast Fourier transform (FFT). The control over the speckle size, density and speckle clustering facilitates the successful fabrication of black silicon with different surface structures. The controllability and tunability of randomness makes this technique a robust method for fabricating predictable 2D Gaussian random structures and black silicon structures. These structures can enhance the light trapping significantly in solar cells and hence enable improved energy harvesting. Further, this technique can enable efficient fabrication of disordered photonic structures and random media based devices.

Speckle-modulating optical coherence tomography in living mice and humans.

PubMed

Liba, Orly; Lew, Matthew D; SoRelle, Elliott D; Dutta, Rebecca; Sen, Debasish; Moshfeghi, Darius M; Chu, Steven; de la Zerda, Adam

2017-06-20

Optical coherence tomography (OCT) is a powerful biomedical imaging technology that relies on the coherent detection of backscattered light to image tissue morphology in vivo. As a consequence, OCT is susceptible to coherent noise (speckle noise), which imposes significant limitations on its diagnostic capabilities. Here we show speckle-modulating OCT (SM-OCT), a method based purely on light manipulation that virtually eliminates speckle noise originating from a sample. SM-OCT accomplishes this by creating and averaging an unlimited number of scans with uncorrelated speckle patterns without compromising spatial resolution. Using SM-OCT, we reveal small structures in the tissues of living animals, such as the inner stromal structure of a live mouse cornea, the fine structures inside the mouse pinna, and sweat ducts and Meissner's corpuscle in the human fingertip skin-features that are otherwise obscured by speckle noise when using conventional OCT or OCT with current state of the art speckle reduction methods.

Statistical spatial properties of speckle patterns generated by multiple laser beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Le Cain, A.; Sajer, J. M.; Riazuelo, G.

2011-08-15

This paper investigates hot spot characteristics generated by the superposition of multiple laser beams. First, properties of speckle statistics are studied in the context of only one laser beam by computing the autocorrelation function. The case of multiple laser beams is then considered. In certain conditions, it is shown that speckles have an ellipsoidal shape. Analytical expressions of hot spot radii generated by multiple laser beams are derived and compared to numerical estimates made from the autocorrelation function. They are also compared to numerical simulations performed within the paraxial approximation. Excellent agreement is found for the speckle width as wellmore » as for the speckle length. Application to the speckle patterns generated in the Laser MegaJoule configuration in the zone where all the beams overlap is presented. Influence of polarization on the size of the speckles as well as on their abundance is studied.« less

Real-time speckle reduction in optical coherence tomography using the dual window method

PubMed Central

Zhao, Yang; Chu, Kengyeh K.; Eldridge, Will J.; Jelly, Evan T.; Crose, Michael; Wax, Adam

2018-01-01

Speckle is an intrinsic noise of interferometric signals which reduces contrast and degrades the quality of optical coherence tomography (OCT) images. Here, we present a frequency compounding speckle reduction technique using the dual window (DW) method. Using the DW method, speckle noise is reduced without the need to acquire multiple frames. A ~25% improvement in the contrast-to-noise ratio (CNR) was achieved using the DW speckle reduction method with only minimal loss (~17%) in axial resolution. We also demonstrate that real-time speckle reduction can be achieved at a B-scan rate of ~21 frames per second using a graphic processing unit (GPU). The DW speckle reduction technique can work on any existing OCT instrument without further system modification or extra components. This makes it applicable both in real-time imaging systems and during post-processing. PMID:29552398

Speckle reduction in optical coherence tomography by adaptive total variation method

NASA Astrophysics Data System (ADS)

Wu, Tong; Shi, Yaoyao; Liu, Youwen; He, Chongjun

2015-12-01

An adaptive total variation method based on the combination of speckle statistics and total variation restoration is proposed and developed for reducing speckle noise in optical coherence tomography (OCT) images. The statistical distribution of the speckle noise in OCT image is investigated and measured. With the measured parameters such as the mean value and variance of the speckle noise, the OCT image is restored by the adaptive total variation restoration method. The adaptive total variation restoration algorithm was applied to the OCT images of a volunteer's hand skin, which showed effective speckle noise reduction and image quality improvement. For image quality comparison, the commonly used median filtering method was also applied to the same images to reduce the speckle noise. The measured results demonstrate the superior performance of the adaptive total variation restoration method in terms of image signal-to-noise ratio, equivalent number of looks, contrast-to-noise ratio, and mean square error.

Speckle-modulating optical coherence tomography in living mice and humans

PubMed Central

Liba, Orly; Lew, Matthew D.; SoRelle, Elliott D.; Dutta, Rebecca; Sen, Debasish; Moshfeghi, Darius M.; Chu, Steven; de la Zerda, Adam

2017-01-01

Optical coherence tomography (OCT) is a powerful biomedical imaging technology that relies on the coherent detection of backscattered light to image tissue morphology in vivo. As a consequence, OCT is susceptible to coherent noise (speckle noise), which imposes significant limitations on its diagnostic capabilities. Here we show speckle-modulating OCT (SM-OCT), a method based purely on light manipulation that virtually eliminates speckle noise originating from a sample. SM-OCT accomplishes this by creating and averaging an unlimited number of scans with uncorrelated speckle patterns without compromising spatial resolution. Using SM-OCT, we reveal small structures in the tissues of living animals, such as the inner stromal structure of a live mouse cornea, the fine structures inside the mouse pinna, and sweat ducts and Meissner’s corpuscle in the human fingertip skin—features that are otherwise obscured by speckle noise when using conventional OCT or OCT with current state of the art speckle reduction methods. PMID:28632205

Speckle-modulating optical coherence tomography in living mice and humans

NASA Astrophysics Data System (ADS)

Liba, Orly; Lew, Matthew D.; Sorelle, Elliott D.; Dutta, Rebecca; Sen, Debasish; Moshfeghi, Darius M.; Chu, Steven; de La Zerda, Adam

2017-06-01

Optical coherence tomography (OCT) is a powerful biomedical imaging technology that relies on the coherent detection of backscattered light to image tissue morphology in vivo. As a consequence, OCT is susceptible to coherent noise (speckle noise), which imposes significant limitations on its diagnostic capabilities. Here we show speckle-modulating OCT (SM-OCT), a method based purely on light manipulation that virtually eliminates speckle noise originating from a sample. SM-OCT accomplishes this by creating and averaging an unlimited number of scans with uncorrelated speckle patterns without compromising spatial resolution. Using SM-OCT, we reveal small structures in the tissues of living animals, such as the inner stromal structure of a live mouse cornea, the fine structures inside the mouse pinna, and sweat ducts and Meissner's corpuscle in the human fingertip skin--features that are otherwise obscured by speckle noise when using conventional OCT or OCT with current state of the art speckle reduction methods.

GEOMORPHIC CONTROLS ON MEADOW ECOSYSTEMS IN THE CENTRAL GREAT BASIN

EPA Science Inventory

Wet meadows, riparian corridor phreatophyte assemblages, and high-altitude spring-fed aspen meadows comprise a very small percentage of the total landscape of the mountain ranges in the central Great Basin however, they represent important ecological environments. We have used s...

Deformation-induced speckle-pattern evolution and feasibility of correlational speckle tracking in optical coherence elastography.

PubMed

Zaitsev, Vladimir Y; Matveyev, Alexandr L; Matveev, Lev A; Gelikonov, Grigory V; Gelikonov, Valentin M; Vitkin, Alex

2015-07-01

Feasibility of speckle tracking in optical coherence tomography (OCT) based on digital image correlation (DIC) is discussed in the context of elastography problems. Specifics of applying DIC methods to OCT, compared to processing of photographic images in mechanical engineering applications, are emphasized and main complications are pointed out. Analytical arguments are augmented by accurate numerical simulations of OCT speckle patterns. In contrast to DIC processing for displacement and strain estimation in photographic images, the accuracy of correlational speckle tracking in deformed OCT images is strongly affected by the coherent nature of speckles, for which strain-induced complications of speckle “blinking” and “boiling” are typical. The tracking accuracy is further compromised by the usually more pronounced pixelated structure of OCT scans compared with digital photographic images in classical DIC applications. Processing of complex-valued OCT data (comprising both amplitude and phase) compared to intensity-only scans mitigates these deleterious effects to some degree. Criteria of the attainable speckle tracking accuracy and its dependence on the key OCT system parameters are established.

Numerical study on statistical properties of speckle pattern in laser projection display based on human eye model

NASA Astrophysics Data System (ADS)

Cui, Zhe; Wang, Anting; Ma, Qianli; Ming, Hai

2013-12-01

In this paper, the laser speckle pattern on human retina for a laser projection display is simulated. By introducing a specific eye model `Indiana Eye', the statistical properties of the laser speckle are numerical investigated. The results show that the aberrations of human eye (mostly spherical and chromatic) will decrease the speckle contrast felt by people. When the wavelength of the laser source is 550 nm (green), people will feel the strongest speck pattern and the weakest when the wavelength is 450 nm (blue). Myopia and hyperopia will decrease the speckle contrast by introducing large spherical aberrations. Although aberration is good for speckle reduction, but it will degrade the imaging capability of the eye. The results show that laser source (650 nm) will have the best image quality on the retina. At last, we compare the human eye with an aberration-free imaging system. Both the speckle contrast and the image quality appear different behavior in these two imaging systems. The results are useful when a standardized measurement procedure for speckle contrast needs to be built.

Laser Speckle Imaging to Monitor Microvascular Blood Flow: A Review.

PubMed

Vaz, Pedro G; Humeau-Heurtier, Anne; Figueiras, Edite; Correia, Carlos; Cardoso, Joao

2016-01-01

Laser speckle is a complex interference phenomenon that can easily be understood, in concept, but is difficult to predict mathematically, because it is a stochastic process. The use of laser speckle to produce images, which can carry many types of information, is called laser speckle imaging (LSI). The biomedical applications of LSI started in 1981 and, since then, many scientists have improved the laser speckle theory and developed different imaging techniques. During this process, some inconsistencies have been propagated up to now. These inconsistencies should be clarified in order to avoid errors in future works. This review presents a review of the laser speckle theory used in biomedical applications. Moreover, we also make a review of the practical concepts that are useful in the construction of laser speckle imagers. This study is not only an exposition of the concepts that can be found in the literature but also a critical analysis of the investigations presented so far. Concepts like scatterers velocity distribution, effect of static scatterers, optimal speckle size, light penetration angle, and contrast computation algorithms are discussed in detail.

A network extension of species occupancy models in a patchy environment applied to the Yosemite toad (Anaxyrus canorus)

USGS Publications Warehouse

Berlow, Eric L.; Knapp, Roland A.; Ostoja, Steven M.; Williams, Richard J.; McKenny, Heather; Matchett, John R.; Guo, Qinghau; Fellers, Gary M.; Kleeman, Patrick; Brooks, Matthew L.; Joppa, Lucas

2013-01-01

A central challenge of conservation biology is using limited data to predict rare species occurrence and identify conservation areas that play a disproportionate role in regional persistence. Where species occupy discrete patches in a landscape, such predictions require data about environmental quality of individual patches and the connectivity among high quality patches. We present a novel extension to species occupancy modeling that blends traditionalpredictions of individual patch environmental quality with network analysis to estimate connectivity characteristics using limited survey data. We demonstrate this approach using environmental and geospatial attributes to predict observed occupancy patterns of the Yosemite toad (Anaxyrus (= Bufo) canorus) across >2,500 meadows in Yosemite National Park (USA). A. canorus, a Federal Proposed Species, breeds in shallow water associated with meadows. Our generalized linear model (GLM) accurately predicted ~84% of true presence-absence data on a subset of data withheld for testing. The predicted environmental quality of each meadow was iteratively ‘boosted’ by the quality of neighbors within dispersal distance. We used this park-wide meadow connectivity network to estimate the relative influence of an individual Meadow’s ‘environmental quality’ versus its ‘network quality’ to predict: a) clusters of high quality breeding meadows potentially linked by dispersal, b) breeding meadows with high environmental quality that are isolated from other such meadows, c) breeding meadows with lower environmental quality where long-term persistence may critically depend on the network neighborhood, and d) breeding meadows with the biggest impact on park-wide breeding patterns. Combined with targeted data on dispersal, genetics, disease, and other potential stressors, these results can guide designation of core conservation areas for A. canorus in Yosemite National Park.

Grazing exclusion increases soil CO2 emission during the growing season in alpine meadows on the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Guo, Na; Wang, Aidong; Allan Degen, A.; Deng, Bin; Shang, Zhanhuan; Ding, Luming; Long, Ruijun

2018-02-01

Soil CO2 emission is a key part of the terrestrial carbon cycle. Grazing exclusion by fencing is often considered a beneficial grassland management option to restore degraded grassland, but its effect on soil CO2 emission on the northeastern Tibetan Plateau is equivocal and is the subject of this study. Using a closed static chamber, we measured diurnal soil CO2 flux weekly from July, 2008, to April, 2009, in response to grazing and grazing exclusion in the alpine meadow and alpine shrub meadow. Concomitantly, soil temperature was measured at depths of 5 cm, 10 cm, 15 cm and 20 cm with digital temperature sensors. It emerged that: 1) non-grazed grasslands emitted more soil CO2 than grazed grasslands over the growing season; 2) the alpine shrub meadow emitted more soil CO2 than the alpine meadow; the annual cumulative soil CO2 emissions of alpine meadow and alpine shrub meadow were 241.5-326.5 g C/m2 and 429.0-512.5 g C/m2, respectively; 3) seasonal patterns were evident with more soil CO2 flux in the growing than in the non-growing season; and 4) the diurnal soil CO2 flux exhibited a single peak across all sampling sites. In addition, soil CO2 flux was correlated positively with soil temperature at 5 cm, but not at the other depths. We concluded that grazing exclusion enhanced soil CO2 emission over the growing season, and decreased carbon sequestration of alpine meadow and alpine shrub meadow on the northeastern Tibetan Plateau. Since an increase in soil temperature increased soil CO2 flux, global warming could have an effect on soil CO2 emission in the future.

Volcanic rocks of the McDermitt Caldera, Nevada-Oregon

USGS Publications Warehouse

Greene, Robert C.

1976-01-01

The McDermitt caldera, a major Miocene eruptive center is locatedin the northernmost Great Basin directly west of McDermitt, Nev. The alkali rhyolite of Jordan Meadow was erupted from the caldera and covered an area of about 60,000 sq km; the volume of rhyolite is about 960 cubic km. Paleozoic and Mesozoic sedimentary rocks and Mesozoic granodiorite form the pre-Tertiary Basement in this area.. Overlying these is a series of volcanic rocks, probably all of Miocene age. The lowest is a dacite welded tuff, a reddish-brown rock featuring abundant phenocrysts of plagioclase, hornblende, and biotite; next is a heterogeneous unit consisting of mocks ranging from basalt to dacite. Overlying these is the basalt and andesite of Orevada View, over 700 m thick and consisting of a basal unit of cinder agglutinate overlain by basalt and andesite, much of which contains conspicuous large plagioclase phenocrysts. Near Disaster Peak and Orevada View, the basalt and andesite are overlain by additional units of silicic volcanic rocks. The lower alkali rhyolite welded tuff contains abundant phenocrysts of alkali feldspar and has a vitric phase with obvious pumice and shard texture. The rhyolite of Little Peak consists of a wide variety of banded flows or welded ruffs and breccias, mostly containing abundant alkali feldspar phenocrysts. It extends south from Disaster Peak and apparently underlies the alkali rhyolite of Jordan Meadow. The quartz latite of Sage Creek lies north of Disaster Peak and consists mostly of finely mottled quartz latite with sparse minute plagioclase phenocrysts. Volcanic rock units in the east part of the area near the Cordero mine include trachyandesite, quartz labile of McConnell Canyon, and rhyolite of McCormick Ranch. The trachyandesite is dark gray and contains less than 1 percent microphenocrysts plagioclase. It is the lowest unit exposed and may correlate with part of the basalt and andesite of Orevada View. The quartz latite of McConnell Canyon is olive gray and contains about 8 percent plagioclase phenocrysts. It has an upper phase of black vitrophyre which directly underlies The alkali rhyolite of Jordan Meadow. The rhyolite of McCormick Ranch is present farther north and consists of pinkish rhyolite with small amounts of phenocrysts of alkali feldspar, quartz, and plagioclase. The alkali rhyolite of Jordan Meadow consists of interlayered aphyric, sparsely porphyritic, and abundantly porphyritic alkali rhyolites whose colors are predominantly light gray, greenish gray, and brown, respectively. Phenocrysts are alkali feldspar (to 15 percent) locally with quartz. Sections inside the caldera are as much as 360 m thick and consist of intimately interlayered gray, green, and brown alkali rhyolites commonly flow folded. Outside the caldera sections are equally thick in the south and southwest, but thinner to the north; in these places units of similar lithology are persistent for many kilometers, and flow folding is rare. A basal green porphyritic unit north of the caldera contains definite shard texture, but elsewhere this feature is rare. Nevertheless, the great lateral extent and relative thinness of the alkali rhyolite of Jordan Meadow suggests that it is welded ash-flow tuff. Overlying the alkali rhyolite of Jordan Meadow within the McDermitt caldera are four units of lavas. The rhyolite of Hoppin Peaks contains light-brownish-gray rhyolite and black vitophyre, all with sparse phenocrysts of alkali feldspar, quartz, and plagioclase. The rhyolite of McDermitt Creek is greenish or brownish gray and contains abundant phenocrysts of plagioclase. It .is in part structureless and in part flow banded. Alkali rhyolite of Washburn Creek is light gray and contains 0-5 percent phenocrysts alkali feldspar. Quartz labile of Black Mountain forms four isolated remnants of volcanoes in the south part of the caldera. It is brown where well crystallized and black where vitric and contains 5-15 percent pla

DISTRIBUTION AND QUALITY OF SEAGRASS MEADOWS IN THE PENSACOLA BAY SYSTEM

EPA Science Inventory

Abstract for oral presentation: Seagrass meadows have 22 ecological benefits and have an estimated value of $20,500 per acre in Florida. Seagrass meadows support a variety of marine life that includes macroalgae (148 species), epiphytes (1 13 species), macroinvertebrates (230 spe...

RIVERBANK AND MEADOW, LOOKING SOUTHEAST. PA148 AND PA149 CAN BE ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

RIVERBANK AND MEADOW, LOOKING SOUTHEAST. PA-1-48 AND PA-1-49 CAN BE PAIRED TO FORM A PANORAMA SHOWING THE RELATIONSHIP BETWEEN THE RIVERBANK AND THE MEADOW - John Bartram House & Garden, 54th Street & Lindbergh Boulevard, Philadelphia, Philadelphia County, PA

Inshore capture-based tuna aquaculture impact on Posidonia oceanica meadows in the eastern part of the Adriatic Sea.

PubMed

Kružić, Petar; Vojvodić, Vjeročka; Bura-Nakić, Elvira

2014-09-15

Mapping and monitoring of the seagrass Posidonia oceanica in the eastern (Croatian) part of the Adriatic Sea since 2004 indicates a significant decline in meadow density in an area impacted by inshore capture-based tuna aquaculture. The density and overall condition of P. oceanica meadows impacted by tuna farms near Fulija Islet was compared to two reference sites (Iž Island and Mrtovnjak Islet). The factors with the most significant influence on P. oceanica meadows were found to be the input of organic matter originating from the cages, as well as high epiphyte biomass caused by nutrient enrichment. Significant differences in nutrient concentrations were found between the sites impacted by tuna farms (Fulija Islet) and the control stations. Shoot density of the P. oceanica meadows decreased at the stations in close vicinity to the tuna farm, which suggests that the tuna farm activity strongly affected the surrounding meadows. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effects of tourism and topography on vegetation diversity in the subalpine meadows of the Dongling Mountains of Beijing, China.

PubMed

Zhang, Jin-Tun; Xiang, ChunLing; Li, Min

2012-02-01

Subalpine meadows in the Dongling Mountains (located at E115º26'-115º40', N40º00'-40º05') of Beijing, China are important for tourism and the provision of ecosystem services. However, because of poor management serious degradation has occurred on these subalpine meadows. The aim of this paper is to present a quantitative analysis of effects of tourism disturbance and topography on the status and diversity of montane meadow communities and to provide direction for improved management. Sixty quadrats of 2 × 2 m(2) along 10 transects were set up to collect data on site characteristics and vegetation status. The relationships between community composition and structure, species diversity, and tourism disturbance and topographic variables were analyzed by multivariate methods (TWINSPAN and CCA). The results showed that eight meadow communities were identified by TWINSPAN. Most of them were seriously degraded. The first CCA axis identified an elevation and tourism disturbance intensity gradient, which illustrated that tourism disturbance and elevation were most important factors influencing meadow types, composition and structure. Some resistant species and response species to tourism disturbance were identified and can be used as indicator species of tourism disturbance. Species richness, heterogeneity and evenness were closely related to tourism disturbance and elevation. It is concluded that tourism disturbance must be controlled to enable grassland rehabilitation to occur in the meadows. Measures of effective management of the meadows were discussed.

SAR Speckle Noise Reduction Using Wiener Filter

NASA Technical Reports Server (NTRS)

Joo, T. H.; Held, D. N.

1983-01-01

Synthetic aperture radar (SAR) images are degraded by speckle. A multiplicative speckle noise model for SAR images is presented. Using this model, a Wiener filter is derived by minimizing the mean-squared error using the known speckle statistics. Implementation of the Wiener filter is discussed and experimental results are presented. Finally, possible improvements to this method are explored.

Improvement of Speckle Contrast Image Processing by an Efficient Algorithm.

PubMed

Steimers, A; Farnung, W; Kohl-Bareis, M

2016-01-01

We demonstrate an efficient algorithm for the temporal and spatial based calculation of speckle contrast for the imaging of blood flow by laser speckle contrast analysis (LASCA). It reduces the numerical complexity of necessary calculations, facilitates a multi-core and many-core implementation of the speckle analysis and enables an independence of temporal or spatial resolution and SNR. The new algorithm was evaluated for both spatial and temporal based analysis of speckle patterns with different image sizes and amounts of recruited pixels as sequential, multi-core and many-core code.

Quantitative laser speckle flowmetry of the in vivo microcirculation using sidestream dark field microscopy

PubMed Central

Nadort, Annemarie; Woolthuis, Rutger G.; van Leeuwen, Ton G.; Faber, Dirk J.

2013-01-01

We present integrated Laser Speckle Contrast Imaging (LSCI) and Sidestream Dark Field (SDF) flowmetry to provide real-time, non-invasive and quantitative measurements of speckle decorrelation times related to microcirculatory flow. Using a multi exposure acquisition scheme, precise speckle decorrelation times were obtained. Applying SDF-LSCI in vitro and in vivo allows direct comparison between speckle contrast decorrelation and flow velocities, while imaging the phantom and microcirculation architecture. This resulted in a novel analysis approach that distinguishes decorrelation due to flow from other additive decorrelation sources. PMID:24298399

Optimization of algorithm of coding of genetic information of Chlamydia

NASA Astrophysics Data System (ADS)

Feodorova, Valentina A.; Ulyanov, Sergey S.; Zaytsev, Sergey S.; Saltykov, Yury V.; Ulianova, Onega V.

2018-04-01

New method of coding of genetic information using coherent optical fields is developed. Universal technique of transformation of nucleotide sequences of bacterial gene into laser speckle pattern is suggested. Reference speckle patterns of the nucleotide sequences of omp1 gene of typical wild strains of Chlamydia trachomatis of genovars D, E, F, G, J and K and Chlamydia psittaci serovar I as well are generated. Algorithm of coding of gene information into speckle pattern is optimized. Fully developed speckles with Gaussian statistics for gene-based speckles have been used as criterion of optimization.

Bio-speckle assessment of bruising in fruits

NASA Astrophysics Data System (ADS)

Pajuelo, M.; Baldwin, G.; Rabal, H.; Cap, N.; Arizaga, R.; Trivi, M.

2003-07-01

The dynamic speckle patterns or bio-speckle is a phenomenon produced by laser illumination of active materials, such as a biological tissue. Fruits, even hard peel ones, show a speckle activity that can be related to maturity, turgor, damage, aging, and mechanical properties. In this case, we suggest a bio-speckle technique as a potential methodology for the study of impact on apples and the analysis of bruises produced by them. The aim is to correlate physical properties of apples with quality factors using a non-contact and non-invasive technique.

Velocity measurements of heterogeneous RBC flow in capillary vessels using dynamic laser speckle signal.

PubMed

Li, Chenxi; Wang, Ruikang

2017-04-01

We propose an approach to measure heterogeneous velocities of red blood cells (RBCs) in capillary vessels using full-field time-varying dynamic speckle signals. The approach utilizes a low coherent laser speckle imaging system to record the instantaneous speckle pattern, followed by an eigen-decomposition-based filtering algorithm to extract dynamic speckle signal due to the moving RBCs. The velocity of heterogeneous RBC flows is determined by cross-correlating the temporal dynamic speckle signals obtained at adjacent locations. We verify the approach by imaging mouse pinna in vivo, demonstrating its capability for full-field RBC flow mapping and quantifying flow pattern with high resolution. It is expected to investigate the dynamic action of RBCs flow in capillaries under physiological changes.

GROUND WATER/SURFACE WATER INTERACTIONS IN A GREAT BASIN WET MEADOW ECOSYSTEM

EPA Science Inventory

Riparian corridors within upland watersheds of the Great Basin locally contain wet meadow ecosystems that support much of the region's biodiversity. Plant communities in these riparian and wet meadow ecosystems can be highly dependent on the depth to and fluctuations in the water...

Factors influencing carbon storage capacity of eelgrass meadows in New England

EPA Science Inventory

Seagrasses are known to accumulate and store large quantities of carbon although carbon accumulation and storage varies between and within meadows. In this study, we measured carbon accumulation and storage in sediments of 8 eelgrass (Zostera marina L.) meadows in New England an...

The repeatability and characteristics of right ventricular longitudinal strain imaging by speckle-tracking echocardiography in healthy dogs.

PubMed

Morita, T; Nakamura, K; Osuga, T; Yokoyama, N; Khoirun, N; Morishita, K; Sasaki, N; Ohta, H; Takiguchi, M

2017-08-01

To assess the repeatability and characteristics of echocardiographic indices of the right ventricular (RV) function derived from speckle-tracking echocardiography. Fourteen laboratory Beagles and 103 privately owned dogs without cardiac disease were involved in this study. Right ventricular longitudinal strain, strain rate, and a strain-related index for assessing RV dyssynchrony derived from speckle-tracking echocardiography were obtained by two different observers using five Beagles. Within-day, between-day, and interobserver coefficients of variation and the intraclass correlation coefficient of speckle-tracking echocardiography indices were determined. Both speckle-tracking echocardiography and conventional indices of RV function, including the peak velocity of systolic tricuspid annular motion, tricuspid annulus plane systolic excursion, fractional area change, and the Tei index, were obtained from 14 Beagles and 103 privately owned dogs. Relationships between echocardiographic indices and the body weight, heart rate, age, and sex were estimated by regression analysis. Speckle-tracking echocardiographic indices showed good within-day repeatability, between-day and interobserver repeatability were moderate to good. In large dogs, RV longitudinal strain, strain rate, and fractional area change were significantly decreased, while the index of RV dyssynchrony, systolic tricuspid annular motion, tricuspid annulus plane systolic excursion, and the Tei index were increased. All speckle-tracking and conventional echocardiographic indices were correlated with the body weight. The speckle-tracking echocardiography indices were highly repeatable and body weight affected speckle-tracking echocardiography indices in dogs. Further studies are needed to apply speckle-tracking echocardiography indices in dogs with cardiac disease. Copyright © 2017 Elsevier B.V. All rights reserved.

Meadow contraction and extinction debt in meadow plants and moths in the Western Cascades

EPA Science Inventory

Meadows in the western Cascades have contracted and fragmented by approximately 50% in the past 60 years. These habitats occupy only about 5% of the landscape of the western Cascades but are important for the preservation of biodiversity and rare species. This habitat loss and ...

75 FR 27549 - Combined Notice of Filings #1

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-17

... Numbers: EG10-33-000. Applicants: Meadow Lake Wind Farm III LLC. Description: Self-Certification of exempt wholesale generator status of Meadow Lake Wind Farm III LLC. Filed Date: 04/20/2010. Accession Number.... Applicants: Meadow Lake Wind Farm IV LLC. Description: Self-Certification of exempt wholesale generator...

Flooding tolerance of four floodplain meadow species depends on age.

PubMed

Gattringer, Johannes P; Donath, Tobias W; Eckstein, R Lutz; Ludewig, Kristin; Otte, Annette; Harvolk-Schöning, Sarah

2017-01-01

Numerous restoration campaigns focused on re-establishing species-rich floodplain meadows of Central Europe, whose species composition is essentially controlled by regular flooding. Climate change predictions expect strong alterations on the discharge regime of Europe's large rivers with little-known consequences on floodplain meadow plants. In this study, we aim to determine the effects of flooding on seedlings of different ages of four typical flood meadow species. To this end, we flooded seedlings of two familial pairs of flood meadow species of wetter and dryer microhabitats for 2 weeks each, starting 2, 4, 6, and 8 weeks after seedling germination, respectively. We show that a 2-week-flooding treatment had a negative effect on performance of seedlings younger than 6 weeks. Summer floods with high floodwater temperatures may have especially detrimental effects on seedlings, which is corroborated by previous findings. As expected, the plants from wet floodplain meadow microhabitats coped better with the flooding treatment than those from dryer microhabitats. In conclusion, our results suggest that restoration measures may perform more successfully if seedlings of restored species are older than the critical age of about 6 weeks before a spring flooding begins. Seasonal flow patterns may influence vegetation dynamics of floodplain meadows and should, therefore, be taken into account when timing future restoration campaigns.

Flooding tolerance of four floodplain meadow species depends on age

PubMed Central

Donath, Tobias W.; Eckstein, R. Lutz; Ludewig, Kristin; Otte, Annette; Harvolk-Schöning, Sarah

2017-01-01

Numerous restoration campaigns focused on re-establishing species-rich floodplain meadows of Central Europe, whose species composition is essentially controlled by regular flooding. Climate change predictions expect strong alterations on the discharge regime of Europe’s large rivers with little-known consequences on floodplain meadow plants. In this study, we aim to determine the effects of flooding on seedlings of different ages of four typical flood meadow species. To this end, we flooded seedlings of two familial pairs of flood meadow species of wetter and dryer microhabitats for 2 weeks each, starting 2, 4, 6, and 8 weeks after seedling germination, respectively. We show that a 2-week-flooding treatment had a negative effect on performance of seedlings younger than 6 weeks. Summer floods with high floodwater temperatures may have especially detrimental effects on seedlings, which is corroborated by previous findings. As expected, the plants from wet floodplain meadow microhabitats coped better with the flooding treatment than those from dryer microhabitats. In conclusion, our results suggest that restoration measures may perform more successfully if seedlings of restored species are older than the critical age of about 6 weeks before a spring flooding begins. Seasonal flow patterns may influence vegetation dynamics of floodplain meadows and should, therefore, be taken into account when timing future restoration campaigns. PMID:28467463

Speckle averaging system for laser raster-scan image projection

DOEpatents

Tiszauer, D.H.; Hackel, L.A.

1998-03-17

The viewers` perception of laser speckle in a laser-scanned image projection system is modified or eliminated by the addition of an optical deflection system that effectively presents a new speckle realization at each point on the viewing screen to each viewer for every scan across the field. The speckle averaging is accomplished without introduction of spurious imaging artifacts. 5 figs.

Speckle averaging system for laser raster-scan image projection

DOEpatents

Tiszauer, Detlev H.; Hackel, Lloyd A.

1998-03-17

The viewers' perception of laser speckle in a laser-scanned image projection system is modified or eliminated by the addition of an optical deflection system that effectively presents a new speckle realization at each point on the viewing screen to each viewer for every scan across the field. The speckle averaging is accomplished without introduction of spurious imaging artifacts.

Flux or speed? Examining speckle contrast imaging of vascular flows

PubMed Central

Kazmi, S. M. Shams; Faraji, Ehssan; Davis, Mitchell A.; Huang, Yu-Yen; Zhang, Xiaojing J.; Dunn, Andrew K.

2015-01-01

Speckle contrast imaging enables rapid mapping of relative blood flow distributions using camera detection of back-scattered laser light. However, speckle derived flow measures deviate from direct measurements of erythrocyte speeds by 47 ± 15% (n = 13 mice) in vessels of various calibers. Alternatively, deviations with estimates of volumetric flux are on average 91 ± 43%. We highlight and attempt to alleviate this discrepancy by accounting for the effects of multiple dynamic scattering with speckle imaging of microfluidic channels of varying sizes and then with red blood cell (RBC) tracking correlated speckle imaging of vascular flows in the cerebral cortex. By revisiting the governing dynamic light scattering models, we test the ability to predict the degree of multiple dynamic scattering across vessels in order to correct for the observed discrepancies between relative RBC speeds and multi-exposure speckle imaging estimates of inverse correlation times. The analysis reveals that traditional speckle contrast imagery of vascular flows is neither a measure of volumetric flux nor particle speed, but rather the product of speed and vessel diameter. The corrected speckle estimates of the relative RBC speeds have an average 10 ± 3% deviation in vivo with those obtained from RBC tracking. PMID:26203384

Flux or speed? Examining speckle contrast imaging of vascular flows.

PubMed

Kazmi, S M Shams; Faraji, Ehssan; Davis, Mitchell A; Huang, Yu-Yen; Zhang, Xiaojing J; Dunn, Andrew K

2015-07-01

Speckle contrast imaging enables rapid mapping of relative blood flow distributions using camera detection of back-scattered laser light. However, speckle derived flow measures deviate from direct measurements of erythrocyte speeds by 47 ± 15% (n = 13 mice) in vessels of various calibers. Alternatively, deviations with estimates of volumetric flux are on average 91 ± 43%. We highlight and attempt to alleviate this discrepancy by accounting for the effects of multiple dynamic scattering with speckle imaging of microfluidic channels of varying sizes and then with red blood cell (RBC) tracking correlated speckle imaging of vascular flows in the cerebral cortex. By revisiting the governing dynamic light scattering models, we test the ability to predict the degree of multiple dynamic scattering across vessels in order to correct for the observed discrepancies between relative RBC speeds and multi-exposure speckle imaging estimates of inverse correlation times. The analysis reveals that traditional speckle contrast imagery of vascular flows is neither a measure of volumetric flux nor particle speed, but rather the product of speed and vessel diameter. The corrected speckle estimates of the relative RBC speeds have an average 10 ± 3% deviation in vivo with those obtained from RBC tracking.

Compensation for the signal processing characteristics of ultrasound B-mode scanners in adaptive speckle reduction.

PubMed

Crawford, D C; Bell, D S; Bamber, J C

1993-01-01

A systematic method to compensate for nonlinear amplification of individual ultrasound B-scanners has been investigated in order to optimise performance of an adaptive speckle reduction (ASR) filter for a wide range of clinical ultrasonic imaging equipment. Three potential methods have been investigated: (1) a method involving an appropriate selection of the speckle recognition feature was successful when the scanner signal processing executes simple logarithmic compressions; (2) an inverse transform (decompression) of the B-mode image was effective in correcting for the measured characteristics of image data compression when the algorithm was implemented in full floating point arithmetic; (3) characterising the behaviour of the statistical speckle recognition feature under conditions of speckle noise was found to be the method of choice for implementation of the adaptive speckle reduction algorithm in limited precision integer arithmetic. In this example, the statistical features of variance and mean were investigated. The third method may be implemented on commercially available fast image processing hardware and is also better suited for transfer into dedicated hardware to facilitate real-time adaptive speckle reduction. A systematic method is described for obtaining ASR calibration data from B-mode images of a speckle producing phantom.

Multiple speckle illumination for optical-resolution photoacoustic imaging

NASA Astrophysics Data System (ADS)

Poisson, Florian; Stasio, Nicolino; Moser, Christophe; Psaltis, Demetri; Bossy, Emmanuel

2017-03-01

Optical-resolution photoacoustic microscopy offers exquisite and specific contrast to optical absorption. Conventional approaches generally involves raster scanning a focused spot over the sample. Here, we demonstrate that a full-field illumination approach with multiple speckle illumination can also provide diffraction-limited optical-resolution photoacoustic images. Two different proof-of-concepts are demonstrated with micro-structured test samples. The first approach follows the principle of correlation/ghost imaging,1, 2 and is based on cross-correlating photoacoustic signals under multiple speckle illumination with known speckle patterns measured during a calibration step. The second approach is a speckle scanning microscopy technique, which adapts the technique proposed in fluorescence microscopy by Bertolotti and al.:3 in our work, spatially unresolved photoacoustic measurements are performed for various translations of unknown speckle patterns. A phase-retrieval algorithm is used to reconstruct the object from the knowledge of the modulus of its Fourier Transform yielded by the measurements. Because speckle patterns naturally appear in many various situations, including propagation through biological tissue or multi-mode fibers (for which focusing light is either very demanding if not impossible), speckle-illumination-based photoacoustic microscopy provides a powerful framework for the development of novel reconstruction approaches, well-suited to compressed sensing approaches.2

Speckle interferometry of asteroids

NASA Technical Reports Server (NTRS)

Drummond, Jack

1988-01-01

This final report for NASA Contract NAGw-867 consists of abstracts of the first three papers in a series of four appearing in Icarus that were funded by the preceding contract NAGw-224: (1) Speckle Interferometry of Asteroids I. 433 Eros; (2) Speckle Interferometry of Asteroids II. 532 Herculina; (3) Speckle Interferometry of Asteroids III. 511 Davida and its Photometry; and the fourth abstract attributed to NAGw-867, (4) Speckle Interferometry of Asteroids IV. Reconstructed images of 4 Vesta; and a review of the results from the asteroid interferometry program at Steward Observatory prepared for the Asteroids II book, (5) Speckle Interferometry of Asteroids. Two papers on asteroids, indirectly related to speckle interferometry, were written in part under NAGw-867. One is in press and its abstract is included here: Photometric Geodesy of Main-Belt Asteroids. II. Analysis of Lightcurves for Poles, Periods and Shapes; and the other paper, Triaxial Ellipsoid Dimensions and Rotational Pole of 2 Pallas from Two Stellar Occultations, is included in full.

Speckle tracking as a method to measure hemidiaphragm excursion.

PubMed

Goutman, Stephen A; Hamilton, James D; Swihart, Blake; Foerster, Bradley; Feldman, Eva L; Rubin, Jonathan M

2017-01-01

Diaphragm excursion measured via ultrasound may be an important imaging outcome measure of respiratory function. We developed a new method for measuring diaphragm movement and compared it to the more traditional M-mode method. Ultrasound images of the right and left hemidiaphragms were collected to compare speckle tracking and M-mode measurements of diaphragm excursion. Speckle tracking was performed using EchoInsight (Epsilon Imaging, Ann Arbor, Michigan). Six healthy subjects without a history of pulmonary diseases were included in this proof-of-concept study. Speckle tracking of the diaphragm is technically possible. Unlike M-mode, speckle tracking carries the advantage of reliable visualization and measurement of the left hemidiaphragm. Speckle tracking accounted for diaphragm movement simultaneously in the cephalocaudad and mediolateral directions, unlike M-mode, which is 1-dimensional. Diaphragm speckle tracking may represent a novel, more robust method for measuring diaphragm excursion, especially for the left hemidiaphragm. Muscle Nerve 55: 125-127, 2017. © 2016 Wiley Periodicals, Inc.

Speckle lithography for fabricating Gaussian, quasi-random 2D structures and black silicon structures

PubMed Central

Bingi, Jayachandra; Murukeshan, Vadakke Matham

2015-01-01

Laser speckle pattern is a granular structure formed due to random coherent wavelet interference and generally considered as noise in optical systems including photolithography. Contrary to this, in this paper, we use the speckle pattern to generate predictable and controlled Gaussian random structures and quasi-random structures photo-lithographically. The random structures made using this proposed speckle lithography technique are quantified based on speckle statistics, radial distribution function (RDF) and fast Fourier transform (FFT). The control over the speckle size, density and speckle clustering facilitates the successful fabrication of black silicon with different surface structures. The controllability and tunability of randomness makes this technique a robust method for fabricating predictable 2D Gaussian random structures and black silicon structures. These structures can enhance the light trapping significantly in solar cells and hence enable improved energy harvesting. Further, this technique can enable efficient fabrication of disordered photonic structures and random media based devices. PMID:26679513

In vivo burn diagnosis by camera-phone diffuse reflectance laser speckle detection.

PubMed

Ragol, S; Remer, I; Shoham, Y; Hazan, S; Willenz, U; Sinelnikov, I; Dronov, V; Rosenberg, L; Bilenca, A

2016-01-01

Burn diagnosis using laser speckle light typically employs widefield illumination of the burn region to produce two-dimensional speckle patterns from light backscattered from the entire irradiated tissue volume. Analysis of speckle contrast in these time-integrated patterns can then provide information on burn severity. Here, by contrast, we use point illumination to generate diffuse reflectance laser speckle patterns of the burn. By examining spatiotemporal fluctuations in these time-integrated patterns along the radial direction from the incident point beam, we show the ability to distinguish partial-thickness burns in a porcine model in vivo within the first 24 hours post-burn. Furthermore, our findings suggest that time-integrated diffuse reflectance laser speckle can be useful for monitoring burn healing over time post-burn. Unlike conventional diffuse reflectance laser speckle detection systems that utilize scientific or industrial-grade cameras, our system is designed with a camera-phone, demonstrating the potential for burn diagnosis with a simple imager.

Nonlocal Total-Variation-Based Speckle Filtering for Ultrasound Images.

PubMed

Wen, Tiexiang; Gu, Jia; Li, Ling; Qin, Wenjian; Wang, Lei; Xie, Yaoqin

2016-07-01

Ultrasound is one of the most important medical imaging modalities for its real-time and portable imaging advantages. However, the contrast resolution and important details are degraded by the speckle in ultrasound images. Many speckle filtering methods have been developed, but they are suffered from several limitations, difficult to reach a balance between speckle reduction and edge preservation. In this paper, an adaptation of the nonlocal total variation (NLTV) filter is proposed for speckle reduction in ultrasound images. The speckle is modeled via a signal-dependent noise distribution for the log-compressed ultrasound images. Instead of the Euclidian distance, the statistical Pearson distance is introduced in this study for the similarity calculation between image patches via the Bayesian framework. And the Split-Bregman fast algorithm is used to solve the adapted NLTV despeckling functional. Experimental results on synthetic and clinical ultrasound images and comparisons with some classical and recent algorithms are used to demonstrate its improvements in both speckle noise reduction and tissue boundary preservation for ultrasound images. © The Author(s) 2015.

MuLoG, or How to Apply Gaussian Denoisers to Multi-Channel SAR Speckle Reduction?

PubMed

Deledalle, Charles-Alban; Denis, Loic; Tabti, Sonia; Tupin, Florence

2017-09-01

Speckle reduction is a longstanding topic in synthetic aperture radar (SAR) imaging. Since most current and planned SAR imaging satellites operate in polarimetric, interferometric, or tomographic modes, SAR images are multi-channel and speckle reduction techniques must jointly process all channels to recover polarimetric and interferometric information. The distinctive nature of SAR signal (complex-valued, corrupted by multiplicative fluctuations) calls for the development of specialized methods for speckle reduction. Image denoising is a very active topic in image processing with a wide variety of approaches and many denoising algorithms available, almost always designed for additive Gaussian noise suppression. This paper proposes a general scheme, called MuLoG (MUlti-channel LOgarithm with Gaussian denoising), to include such Gaussian denoisers within a multi-channel SAR speckle reduction technique. A new family of speckle reduction algorithms can thus be obtained, benefiting from the ongoing progress in Gaussian denoising, and offering several speckle reduction results often displaying method-specific artifacts that can be dismissed by comparison between results.

Effect of laser speckle on light from laser diode-pumped phosphor-converted light sources.

PubMed

Aquino, Felipe; Jadwisienczak, Wojciech M; Rahman, Faiz

2017-01-10

Laser diode (LD) pumped white light sources are being developed as an alternative to light-emitting diode-pumped sources for high efficiency and/or high brightness applications. While several performance metrics of laser-pumped phosphor-converted light sources have been investigated, the effect of laser speckle has not been sufficiently explored. This paper describes our experimental studies on how laser speckle affects the behavior of light from laser-excited phosphor lamps. A single LD pumping a phosphor plate was the geometry explored in this work. Overall, our findings are that the down-converted light did not exhibit any speckle, whereas speckle was present in the residual pump light but much reduced from that in direct laser light. Furthermore, a thicker coating of small-grained phosphors served to effectively reduce speckle through static pump light diffusion in the phosphor coating. Our investigations showed that speckle is not of concern in illumination from LD-pumped phosphor-converted light sources.

In vivo burn diagnosis by camera-phone diffuse reflectance laser speckle detection

PubMed Central

Ragol, S.; Remer, I.; Shoham, Y.; Hazan, S.; Willenz, U.; Sinelnikov, I.; Dronov, V.; Rosenberg, L.; Bilenca, A.

2015-01-01

Burn diagnosis using laser speckle light typically employs widefield illumination of the burn region to produce two-dimensional speckle patterns from light backscattered from the entire irradiated tissue volume. Analysis of speckle contrast in these time-integrated patterns can then provide information on burn severity. Here, by contrast, we use point illumination to generate diffuse reflectance laser speckle patterns of the burn. By examining spatiotemporal fluctuations in these time-integrated patterns along the radial direction from the incident point beam, we show the ability to distinguish partial-thickness burns in a porcine model in vivo within the first 24 hours post-burn. Furthermore, our findings suggest that time-integrated diffuse reflectance laser speckle can be useful for monitoring burn healing over time post-burn. Unlike conventional diffuse reflectance laser speckle detection systems that utilize scientific or industrial-grade cameras, our system is designed with a camera-phone, demonstrating the potential for burn diagnosis with a simple imager. PMID:26819831

Speckle-reducing scale-invariant feature transform match for synthetic aperture radar image registration

NASA Astrophysics Data System (ADS)

Wang, Xianmin; Li, Bo; Xu, Qizhi

2016-07-01

The anisotropic scale space (ASS) is often used to enhance the performance of a scale-invariant feature transform (SIFT) algorithm in the registration of synthetic aperture radar (SAR) images. The existing ASS-based methods usually suffer from unstable keypoints and false matches, since the anisotropic diffusion filtering has limitations in reducing the speckle noise from SAR images while building the ASS image representation. We proposed a speckle reducing SIFT match method to obtain stable keypoints and acquire precise matches for the SAR image registration. First, the keypoints are detected in a speckle reducing anisotropic scale space constructed by the speckle reducing anisotropic diffusion, so that speckle noise is greatly reduced and prominent structures of the images are preserved, consequently the stable keypoints can be derived. Next, the probabilistic relaxation labeling approach is employed to establish the matches of the keypoints then the correct match rate of the keypoints is significantly increased. Experiments conducted on simulated speckled images and real SAR images demonstrate the effectiveness of the proposed method.

Speckle size in optical Fourier domain imaging

NASA Astrophysics Data System (ADS)

Lamouche, G.; Vergnole, S.; Bisaillon, C.-E.; Dufour, M.; Maciejko, R.; Monchalin, J.-P.

2007-06-01

As in conventional time-domain optical coherence tomography (OCT), speckle is inherent to any Optical Fourier Domain Imaging (OFDI) of biological tissue. OFDI is also known as swept-source OCT (SS-OCT). The axial speckle size is mainly determined by the OCT resolution length and the transverse speckle size by the focusing optics illuminating the sample. There is also a contribution from the sample related to the number of scatterers contained within the probed volume. In the OFDI data processing, there is some liberty in selecting the range of wavelengths used and this allows variation in the OCT resolution length. Consequently the probed volume can be varied. By performing measurements on an optical phantom with a controlled density of discrete scatterers and by changing the probed volume with different range of wavelengths in the OFDI data processing, there is an obvious change in the axial speckle size, but we show that there is also a less obvious variation in the transverse speckle size. This work contributes to a better understanding of speckle in OCT.

Velocity measurements of heterogeneous RBC flow in capillary vessels using dynamic laser speckle signal

PubMed Central

Li, Chenxi; Wang, Ruikang

2017-01-01

Abstract. We propose an approach to measure heterogeneous velocities of red blood cells (RBCs) in capillary vessels using full-field time-varying dynamic speckle signals. The approach utilizes a low coherent laser speckle imaging system to record the instantaneous speckle pattern, followed by an eigen-decomposition-based filtering algorithm to extract dynamic speckle signal due to the moving RBCs. The velocity of heterogeneous RBC flows is determined by cross-correlating the temporal dynamic speckle signals obtained at adjacent locations. We verify the approach by imaging mouse pinna in vivo, demonstrating its capability for full-field RBC flow mapping and quantifying flow pattern with high resolution. It is expected to investigate the dynamic action of RBCs flow in capillaries under physiological changes. PMID:28384709

Correction for spatial averaging in laser speckle contrast analysis

PubMed Central

Thompson, Oliver; Andrews, Michael; Hirst, Evan

2011-01-01

Practical laser speckle contrast analysis systems face a problem of spatial averaging of speckles, due to the pixel size in the cameras used. Existing practice is to use a system factor in speckle contrast analysis to account for spatial averaging. The linearity of the system factor correction has not previously been confirmed. The problem of spatial averaging is illustrated using computer simulation of time-integrated dynamic speckle, and the linearity of the correction confirmed using both computer simulation and experimental results. The valid linear correction allows various useful compromises in the system design. PMID:21483623

Atherosclerotic plaque characterization by spatial and temporal speckle pattern analysis

NASA Astrophysics Data System (ADS)

Tearney, Guillermo J.; Bouma, Brett E.

2002-04-01

Improved methods are needed to identify the vulnerable coronary plaques responsible for acute myocardial infraction or sudden cardiac death. We describe a method for characterizing the structure and biomechanical properties of atherosclerotic plaques based on speckle pattern fluctuations. Near-field speckle images were acquired from five human aortic specimens ex vivo. The speckle decorrelation time constant varied significantly for vulnerable aortic plaques (τ = 40 ms) versus stable plaques (τ = 400 ms) and normal aorta (τ = 500 ms). These initial results indicate that different atherosclerotic plaque types may be distinguished by analysis of temporal and spatial speckle pattern fluctuations.

Quantifying the Restorable Water Volume of California's Sierra Nevada Meadows

NASA Astrophysics Data System (ADS)

Emmons, J. D.; Yarnell, S. M.; Fryjoff-Hung, A.; Viers, J.

2013-12-01

The Sierra Nevada is estimated to provide over 66% of California's water supply, which is largely derived from snowmelt. Global climate warming is expected to result in a decrease in snow pack and an increase in melting rate, making the attenuation of snowmelt by any means, an important ecosystem service for ensuring water availability. Montane meadows are dispersed throughout the mountain range and can act like natural reservoirs, and also provide wildlife habitat, water filtration, and water storage. Despite the important role of meadows in the Sierra Nevada, a large proportion is degraded from stream incision, which increases volume outflows and reduces overbank flooding, thus reducing infiltration and potential water storage. Restoration of meadow stream channels would therefore improve hydrological functioning, including increased water storage. The potential water holding capacity of restored meadows has yet to be quantified, thus this research seeks to address this knowledge gap by estimating the restorable water volume due to stream incision. More than 17,000 meadows were analyzed by categorizing their erosion potential using channel slope and soil texture, ultimately resulting in six general erodibility types. Field measurements of over 100 meadows, stratified by latitude, elevation, and geologic substrate, were then taken and analyzed for each erodibility type to determine average depth of incision. Restorable water volume was then quantified as a function of water holding capacity of the soil, meadow area and incised depth. Total restorable water volume was found to be 120 x 10^6 m3, or approximately 97,000 acre-feet. Using 95% confidence intervals for incised depth, the upper and lower bounds of the total restorable water volume were found to be 107 - 140 x 10^6 m3. Though this estimate of restorable water volume is small in regards to the storage capacity of typical California reservoirs, restoration of Sierra Nevada meadows remains an important objective. Storage of water in meadows benefits California wildlife, potentially attenuate floods, and elevates base flows, which can ease effects to the spring recession curve from the expected decline in Sierran snowpack with atmospheric warming.

[Influences of land using patterns on the anti-wind erosion of meadow grassland].

PubMed

Zhou, Yao-Zhi; Wang-Xu; Yang, Gui-Xia; Xin, Xiao-Ping

2008-05-01

In order to analyse the effects of the human disturbances to the ability of anti-wind erosion of the Hulunbuir meadow grassland, the methods of vegetation investigation and the wind tunnel experiment were made to research the changes of vegetation and the abilities of anti-wind erosion of meadow grassland under different using patterns of meadow grassland. The results indicate that, under different grazing intensities of meadow grassland, the critical wind velocity of soil erosion (v) changes with the vegetation cover according to the relation of second power function. Along with the grazing intensities increasing and the vegetation cover reducing, the velocity of soil erosion rapidly increased on the condition of similar wind velocity which is speedier than the critical wind velocity of soil erosion. When the meadow grassland is mildly grazed which the vegetation cover maintains 63%, the velocity of soil erosion is small even there is gale that the wind velocity reach 25 m/s. When the vegetation cover of meadow grassland reduced to less than 35%, the velocity of soil erosion rapidly increased with the vegetation cover's reducing on the condition of the wind velocity is among 20-25 m/s. And owing to the no-tillage cropland of meadow grassland is completely far from the protection of the vegetation, the soil wind erosion quantity achieves 682.1 kg/hm2 in a minute when the wind velocity is 25 m/s, which approaches the average formation quantity of soil (1 000 kg/hm2) in a year.

Laser speckle technology in stomatology. diagnostics of stresses and strains of hard biotissues and orthodontic and orthopedic structures

NASA Astrophysics Data System (ADS)

Denisova, Yu. L.; Bazylev, N. B.; Rubnikovich, S. P.; Fomin, N. A.

2013-07-01

We have investigated the formation and dynamics of speckle biofi elds formed by hard biotissues of the oral cavity irradiated with low-intensity radiation. We present experimental methods for diagnosing the stressed-strained state of the maxillodental system and orthodontic and orthopedic structures based on speckle technologies and crosscorrelation analysis of speckle biofi elds.

Spatial Distribution and Conservation of Speckled Hind and Warsaw Grouper in the Atlantic Ocean off the Southeastern U.S.

PubMed Central

Farmer, Nicholas A.; Karnauskas, Mandy

2013-01-01

There is broad interest in the development of efficient marine protected areas (MPAs) to reduce bycatch and end overfishing of speckled hind (Epinephelus drummondhayi) and warsaw grouper (Hyporthodus nigritus) in the Atlantic Ocean off the southeastern U.S. We assimilated decades of data from many fishery-dependent, fishery-independent, and anecdotal sources to describe the spatial distribution of these data limited stocks. A spatial classification model was developed to categorize depth-grids based on the distribution of speckled hind and warsaw grouper point observations and identified benthic habitats. Logistic regression analysis was used to develop a quantitative model to predict the spatial distribution of speckled hind and warsaw grouper as a function of depth, latitude, and habitat. Models, controlling for sampling gear effects, were selected based on AIC and 10-fold cross validation. The best-fitting model for warsaw grouper included latitude and depth to explain 10.8% of the variability in probability of detection, with a false prediction rate of 28–33%. The best-fitting model for speckled hind, per cross-validation, included latitude and depth to explain 36.8% of the variability in probability of detection, with a false prediction rate of 25–27%. The best-fitting speckled hind model, per AIC, also included habitat, but had false prediction rates up to 36%. Speckled hind and warsaw grouper habitats followed a shelf-edge hardbottom ridge from North Carolina to southeast Florida, with speckled hind more common to the north and warsaw grouper more common to the south. The proportion of habitat classifications and model-estimated stock contained within established and proposed MPAs was computed. Existing MPAs covered 10% of probable shelf-edge habitats for speckled hind and warsaw grouper, protecting 3–8% of speckled hind and 8% of warsaw grouper stocks. Proposed MPAs could add 24% more probable shelf-edge habitat, and protect an additional 14–29% of speckled hind and 20% of warsaw grouper stocks. PMID:24260126

Sierra Nevada meadows: species alpha diversity

Treesearch

Raymond D. Ratliff

1993-01-01

Plant species diversity refers to variety and abundance; it does not necessarily relate to meadow health but may provide information important in an ecosystem context. Monitoring to detect change in diversity usually begins with estimating alpha (within) diversity of plant communities. Because few such estimates exist for meadow site classes or specific sites of the...

Upper Elk Meadows Research Natural Area: guidebook supplement 43

Treesearch

Reid Schuller; Cheshire Mayrsohn

2013-01-01

This guidebook describes Upper Elk Meadows Research Natural Area (RNA), a 90-ha (223-ac) area that supports a mixture of coniferous forest and open, shruband herb-dominated wetlands. The major forest plant association present within Upper Elk Meadows RNA is Pacific silver fir/vine maple/coolwort foamflower (Abies amabilis/Acer circinatum-Tiarella trifoliata...

Seed germination ecology of meadow knapweed (Centaurea x moncktonii) populations in New York State

USDA-ARS?s Scientific Manuscript database

The introduced meadow knapweed (Centaurea x moncktonii), a hybrid of black (C. nigra) and brown (C. jacea) knapweeds, appears to be common and expanding in New York agricultural lands, including pastures, meadows and waste areas. The biology and ecology of the hybrid is mostly unstudied, such as its...

INTEGRATING GEOPHYSICS, GEOLOGY, AND HYDROLOGY TO DETERMINE BEDROCK GEOMETRY CONTROLS ON THE ORIGIN OF ISOLATED MEADOW COMPLEXES WITHIN THE CENTRAL GREAT BASIN, NEVADA

EPA Science Inventory

Riparian meadow complexes found in mountain ranges of the Central Great Basin physiographic region (western United States) are of interest to researchers as they contain significant biodiversity relative to the surrounding basin areas. These meadow complexes are currently degradi...

Influences of watershed geomorphology on extent and composition of riparian vegetation

Treesearch

Blake M. Engelhardt; Peter J. Weisberg; Jeanne C. Chambers

2011-01-01

Watershed (drainage basin) morphometry and geology were derived from digital data sets (DEMs and geologic maps). Riparian corridors were classified into five vegetation types (riparian forest, riparian shrub, wet/mesic meadow, dry meadow and shrub dry meadow) using high-resolution aerial photography. Regression and multivariate analyses were used to relate geomorphic...

76 FR 47490 - Endangered and Threatened Wildlife and Plants; Reinstatement of Listing Protections for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-05

...; Reinstatement of Listing Protections for the Preble's Meadow Jumping Mouse AGENCY: Fish and Wildlife Service... protections under the Endangered Species Act of 1973, as amended (Act), for the Preble's meadow jumping mouse... the Preble's Meadow Jumping Mouse To Specify Over What Portion of Its Range the Subspecies is...

Mountain meadows—here today, gone tomorrow? Meadow science and restoration.

Treesearch

Jonathan Thompson

2007-01-01

Mountain meadows in the Pacific Northwest are patches of remarkable biological diversity. Lush, forb-, grass-, and shrub-dominated communities attract rich assemblages of arthropods, support diverse communities of birds, and provide habitat for small mammals and other wildlife. Recent encroachment by conifers has reduced the extent and ecological integrity of meadows,...

A constructed wet meadow model for forested lands in the Southwest

Treesearch

Dave Pawelek; Roy Jemison; Daniel Neary

1999-01-01

Improving primary roads in the Zuni Mountains of New Mexico must take into consideration the wet meadows and upland areas. This study looks at spring flow rates, erosion, channels and changes in plant cover and composition. The goal is to help planners design environmentally sensitive roadways for wet meadow areas.

Impacts of a fuel oil spill on seagrass meadows in a subtropical port, Gladstone, Australia--the value of long-term marine habitat monitoring in high risk areas.

PubMed

Taylor, Helen A; Rasheed, Michael A

2011-01-01

We used an established seagrass monitoring programme to examine the short and longer-term impacts of an oil spill event on intertidal seagrass meadows. Results for potentially impacted seagrass areas were compared with existing monitoring data and with control seagrass meadows located outside of the oil spill area. Seagrass meadows were not significantly affected by the oil spill. Declines in seagrass biomass and area 1month post-spill were consistent between control and impact meadows. Eight months post-spill, seagrass density and area increased to be within historical ranges. The declines in seagrass meadows were likely attributable to natural seasonal variation and a combination of climatic and anthropogenic impacts. The lack of impact from the oil spill was due to several mitigating factors rather than a lack of toxic effects to seagrasses. The study demonstrates the value of long-term monitoring of critical habitats in high risk areas to effectively assess impacts. Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.

Self-organized coherent bursts of stimulated Raman scattering and speckle interaction in multi-speckled laser beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yin, L.; Albright, B. J.; Rose, H. A.

2013-01-15

Nonlinear physics governing the kinetic behavior of stimulated Raman scattering (SRS) in multi-speckled laser beams has been identified in the trapping regime over a wide range of k{lambda}{sub D} values (here k is the wave number of the electron plasma waves and {lambda}{sub D} is the Debye length) in homogeneous and inhomogeneous plasmas. Hot electrons from intense speckles, both forward and side-loss hot electrons produced during SRS daughter electron plasma wave bowing and filamentation, seed and enhance the growth of SRS in neighboring speckles by reducing Landau damping. Trapping-enhanced speckle interaction through transport of hot electrons, backscatter, and sidescatter SRSmore » light waves enable the system of speckles to self-organize and exhibit coherent, sub-ps SRS bursts with more than 100% instantaneous reflectivity, resulting in an SRS transverse coherence width much larger than a speckle width and a SRS spectrum that peaks outside the incident laser cone. SRS reflectivity is found to saturate above a threshold laser intensity at a level of reflectivity that depends on k{lambda}{sub D}: higher k{lambda}{sub D} leads to lower SRS and the reflectivity scales as {approx}(k{lambda}{sub D}){sup -4}. As k{lambda}{sub D} and Landau damping increase, speckle interaction via sidescattered light and side-loss hot electrons decreases and the occurrence of self-organized events becomes infrequent, leading to the reduction of time-averaged SRS reflectivity. It is found that the inclusion of a moderately strong magnetic field in the laser direction can effectively control SRS by suppressing transverse speckle interaction via hot electron transport.« less

Speckle temporal stability in XAO coronagraphic images. II. Refine model for quasi-static speckle temporal evolution for VLT/SPHERE

NASA Astrophysics Data System (ADS)

Martinez, P.; Kasper, M.; Costille, A.; Sauvage, J. F.; Dohlen, K.; Puget, P.; Beuzit, J. L.

2013-06-01

Context. Observing sequences have shown that the major noise source limitation in high-contrast imaging is the presence of quasi-static speckles. The timescale on which quasi-static speckles evolve is determined by various factors, mechanical or thermal deformations, among others. Aims: Understanding these time-variable instrumental speckles and, especially, their interaction with other aberrations, referred to as the pinning effect, is paramount for the search for faint stellar companions. The temporal evolution of quasi-static speckles is, for instance, required for quantifying the gain expected when using angular differential imaging (ADI) and to determining the interval on which speckle nulling techniques must be carried out. Methods: Following an early analysis of a time series of adaptively corrected, coronagraphic images obtained in a laboratory condition with the high-order test bench (HOT) at ESO Headquarters, we confirm our results with new measurements carried out with the SPHERE instrument during its final test phase in Europe. The analysis of the residual speckle pattern in both direct and differential coronagraphic images enables the characterization of the temporal stability of quasi-static speckles. Data were obtained in a thermally actively controlled environment reproducing realistic conditions encountered at the telescope. Results: The temporal evolution of the quasi-static wavefront error exhibits a linear power law, which can be used to model quasi-static speckle evolution in the context of forthcoming high-contrast imaging instruments, with implications for instrumentation (design, observing strategies, data reduction). Such a model can be used for instance to derive the timescale on which non-common path aberrations must be sensed and corrected. We found in our data that quasi-static wavefront error increases with ~0.7 Å per minute.

Restore McComas Meadows; Meadow Creek Watershed, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McRoberts, Heidi

2006-08-01

The Nez Perce Tribe Department of Fisheries Resource Management, Watershed Division approaches watershed restoration with a ridge-top to ridge-top approach. Watershed restoration projects within the Meadow Creek watershed are coordinated and cost shared with the Nez Perce National Forest. The Nez Perce Tribe began watershed restoration projects within the Meadow Creek watershed of the South Fork Clearwater River in 1996. Progress has been made in restoring the watershed by excluding cattle from critical riparian areas through fencing, planting trees in riparian areas within the meadow and its tributaries, prioritizing culverts for replacement to accommodate fish passage, and decommissioning roads tomore » reduce sediment input. Designs for culvert replacements are being coordinated with the Nez Perce National Forest. 20 miles of roads were decommissioned. Tribal crews completed maintenance to the previously built fence.« less

Quantitative model of diffuse speckle contrast analysis for flow measurement.

PubMed

Liu, Jialin; Zhang, Hongchao; Lu, Jian; Ni, Xiaowu; Shen, Zhonghua

2017-07-01

Diffuse speckle contrast analysis (DSCA) is a noninvasive optical technique capable of monitoring deep tissue blood flow. However, a detailed study of the speckle contrast model for DSCA has yet to be presented. We deduced the theoretical relationship between speckle contrast and exposure time and further simplified it to a linear approximation model. The feasibility of this linear model was validated by the liquid phantoms which demonstrated that the slope of this linear approximation was able to rapidly determine the Brownian diffusion coefficient of the turbid media at multiple distances using multiexposure speckle imaging. Furthermore, we have theoretically quantified the influence of optical property on the measurements of the Brownian diffusion coefficient which was a consequence of the fact that the slope of this linear approximation was demonstrated to be equal to the inverse of correlation time of the speckle.

Ultrasound image filtering using the mutiplicative model

NASA Astrophysics Data System (ADS)

Navarrete, Hugo; Frery, Alejandro C.; Sanchez, Fermin; Anto, Joan

2002-04-01

Ultrasound images, as a special case of coherent images, are normally corrupted with multiplicative noise i.e. speckle noise. Speckle noise reduction is a difficult task due to its multiplicative nature, but good statistical models of speckle formation are useful to design adaptive speckle reduction filters. In this article a new statistical model, emerging from the Multiplicative Model framework, is presented and compared to previous models (Rayleigh, Rice and K laws). It is shown that the proposed model gives the best performance when modeling the statistics of ultrasound images. Finally, the parameters of the model can be used to quantify the extent of speckle formation; this quantification is applied to adaptive speckle reduction filter design. The effectiveness of the filter is demonstrated on typical in-vivo log-compressed B-scan images obtained by a clinical ultrasound system.

C3G dynamically associates with nuclear speckles and regulates mRNA splicing.

PubMed

Shakyawar, Dhruv Kumar; Muralikrishna, Bhattiprolu; Radha, Vegesna

2018-05-01

C3G (Crk SH3 domain binding guanine nucleotide releasing factor) (Rap guanine nucleotide exchange factor 1), essential for mammalian embryonic development, is ubiquitously expressed and undergoes regulated nucleocytoplasmic exchange. Here we show that C3G localizes to SC35-positive nuclear speckles and regulates splicing activity. Reversible association of C3G with speckles was seen on inhibition of transcription and splicing. C3G shows partial colocalization with SC35 and is recruited to a chromatin and RNase-sensitive fraction of speckles. Its presence in speckles is dependent on intact cellular actin cytoskeleton and is lost on expression of the kinase Clk1. Rap1, a substrate of C3G, is also present in nuclear speckles, and inactivation of Rap signaling by expression of GFP-Rap1GAP alters speckle morphology and number. Enhanced association of C3G with speckles is seen on glycogen synthase kinase 3 beta inhibition or differentiation of C2C12 cells to myotubes. CRISPR/Cas9-mediated knockdown of C3G resulted in altered splicing activity of an artificial gene as well as endogenous CD44. C3G knockout clones of C2C12 as well as MDA-MB-231 cells showed reduced protein levels of several splicing factors compared with control cells. Our results identify C3G and Rap1 as novel components of nuclear speckles and a role for C3G in regulating cellular RNA splicing activity.

Quantifying relationships between bird and butterfly community shifts and environmental change.

PubMed

Debinski, Diane M; Vannimwegen, Ron E; Jakubauskas, Mark E

2006-02-01

Quantifying the manner in which ecological communities respond during a time of decreasing precipitation is a first step in understanding how they will respond to longer-term climate change. Here we coupled analysis of interannual variability in remotely sensed data with analyses of bird and butterfly community changes in montane meadow communities of the Greater Yellowstone Ecosystem. Landsat satellite imagery was used to classify these meadows into six types along a hydrological gradient. The northern portion of the ecosystem, or Gallatin region, has smaller mean patch sizes separated by ridges of mountains, whereas the southern portion of the ecosystem, or Teton region, has much larger patches within the Jackson Hole valley. Both support a similar suite of butterfly and bird species. The Gallatin region showed more overall among-year variation in the normalized difference vegetation index (NDVI) when meadow types were pooled within regions, perhaps because the patch sizes are smaller on average. Bird and butterfly communities showed significant relationships relative to meadow type and NDVI. We identified several key species that are tightly associated with specific meadow types along the hydrological gradient. Comparing taxonomic groups, fewer birds showed specific habitat affinities than butterflies, perhaps because birds are responding to differences in habitat structure among meadow types and using the landscape at a coarser scale than the butterflies. Comparing regions, the Teton region showed higher predictability of community assemblages as compared to the Gallatin region. The Gallatin region exhibited more significant temporal trends with respect to butterflies. Butterfly communities in wet meadows showed a distinctive shift along the hydrological gradient during a drought period (1997-2000). These results imply that the larger Teton meadows will show more predictable (i.e., static) species-habitat associations over the long term, but that the smaller Gallatin meadows may be an area that will exhibit the effects of global climate change faster.

Digital Holographic Interferometry and Speckle Correlation

NASA Astrophysics Data System (ADS)

Yamaguchi, Ichirou

2010-04-01

Relations and combinations between holographic interferometry and speckle correlation in contouring by phase-shifting digital holography are discussed. Three-dimensional distributions of correlations of the complex amplitudes and intensities before and after the laser wavelength shift are calculated in numerical simulations where a rough surface is modeled with random numbers. Fringe localization related to speckle displacement as well as speckle suppression in phase analysis are demonstrated for general surface shape and recording conditions.

Nakagami-based total variation method for speckle reduction in thyroid ultrasound images.

PubMed

Koundal, Deepika; Gupta, Savita; Singh, Sukhwinder

2016-02-01

A good statistical model is necessary for the reduction in speckle noise. The Nakagami model is more general than the Rayleigh distribution for statistical modeling of speckle in ultrasound images. In this article, the Nakagami-based noise removal method is presented to enhance thyroid ultrasound images and to improve clinical diagnosis. The statistics of log-compressed image are derived from the Nakagami distribution following a maximum a posteriori estimation framework. The minimization problem is solved by optimizing an augmented Lagrange and Chambolle's projection method. The proposed method is evaluated on both artificial speckle-simulated and real ultrasound images. The experimental findings reveal the superiority of the proposed method both quantitatively and qualitatively in comparison with other speckle reduction methods reported in the literature. The proposed method yields an average signal-to-noise ratio gain of more than 2.16 dB over the non-convex regularizer-based speckle noise removal method, 3.83 dB over the Aubert-Aujol model, 1.71 dB over the Shi-Osher model and 3.21 dB over the Rudin-Lions-Osher model on speckle-simulated synthetic images. Furthermore, visual evaluation of the despeckled images shows that the proposed method suppresses speckle noise well while preserving the textures and fine details. © IMechE 2015.

Laser speckle imaging in the spatial frequency domain

PubMed Central

Mazhar, Amaan; Cuccia, David J.; Rice, Tyler B.; Carp, Stefan A.; Durkin, Anthony J.; Boas, David A.; Choi, Bernard; Tromberg, Bruce J.

2011-01-01

Laser Speckle Imaging (LSI) images interference patterns produced by coherent addition of scattered laser light to map subsurface tissue perfusion. However, the effect of longer path length photons is typically unknown and poses a limitation towards absolute quantification. In this work, LSI is integrated with spatial frequency domain imaging (SFDI) to suppress multiple scattering and absorption effects. First, depth sensitive speckle contrast is shown in phantoms by separating a deep source (4 mm) from a shallow source (2 mm) of speckle contrast by using a high spatial frequency of illumination (0.24 mm−1). We develop an SFD adapted correlation diffusion model and show that with high frequency (0.24 mm−1) illumination, doubling of absorption contrast results in only a 1% change in speckle contrast versus 25% change using a planar unmodulated (0 mm−1) illumination. Similar absorption change is mimicked in vivo imaging a finger occlusion and the relative speckle contrast change from baseline is 10% at 0.26 mm−1 versus 60% at 0 mm−1 during a finger occlusion. These results underscore the importance of path length and optical properties in determining speckle contrast. They provide an integrated approach for simultaneous mapping of blood flow (speckle contrast) and oxygenation (optical properties) which can be used to inform tissue metabolism. PMID:21698018

Optical vortices as potential indicators of biophysical dynamics

NASA Astrophysics Data System (ADS)

Majumdar, Anindya; Kirkpatrick, Sean J.

2017-03-01

Laser speckle patterns are granular patterns produced as a result of random interference of light waves. Optical vortices (OVs) are phase singularities in such speckle fields, characterized by zero intensity and an undefined phase. Decorrelation of the speckle fields causes these OVs to move in both time and space. In this work, a variety of parameters of these OVs have been studied. The speckle fields were simulated to undergo three distinct decorrelation behaviors- Gaussian, Lorentzian and constant decorrelations. Different decorrelation behaviors represent different dynamics. For example, Lorentzian and Gaussian decorrelations represent Brownian and ordered motions, respectively. Typical dynamical systems in biophysics are generally argued to be a combination of these. For each of the decorrelation behaviors under study, the vortex trails were tracked while varying the rate of decorrelation. Parameters such as the decorrelation length, average trail length and the deviation of the vortices as they traversed in the speckle field, were studied. Empirical studies were also performed to define the distinction between trails arising from different speckle decorrelation behaviors. The initial studies under stationary speckle fields were followed up by similar studies on shifting fields. A new idea to employ Poincaŕe plots in speckle analysis has also been introduced. Our studies indicate that tracking OVs can be a potential method to study cell and tissue dynamics.

Lagrangian speckle model and tissue-motion estimation--theory.

PubMed

Maurice, R L; Bertrand, M

1999-07-01

It is known that when a tissue is subjected to movements such as rotation, shearing, scaling, etc., changes in speckle patterns that result act as a noise source, often responsible for most of the displacement-estimate variance. From a modeling point of view, these changes can be thought of as resulting from two mechanisms: one is the motion of the speckles and the other, the alterations of their morphology. In this paper, we propose a new tissue-motion estimator to counteract these speckle decorrelation effects. The estimator is based on a Lagrangian description of the speckle motion. This description allows us to follow local characteristics of the speckle field as if they were a material property. This method leads to an analytical description of the decorrelation in a way which enables the derivation of an appropriate inverse filter for speckle restoration. The filter is appropriate for linear geometrical transformation of the scattering function (LT), i.e., a constant-strain region of interest (ROI). As the LT itself is a parameter of the filter, a tissue-motion estimator can be formulated as a nonlinear minimization problem, seeking the best match between the pre-tissue-motion image and a restored-speckle post-motion image. The method is tested, using simulated radio-frequency (RF) images of tissue undergoing axial shear.

Vibrating Optical Fibers to Make Laser Speckle Disappear

NASA Technical Reports Server (NTRS)

McGill, Matthew; Scott, V. Stanley

2005-01-01

In optical systems in which laser illumination is delivered via multimode optical fibers, laser speckle can be rendered incoherent by a simple but highly effective technique. The need to eliminate speckle arises because speckle can make it difficult to observe edges and other sharp features, thereby making it difficult to perform precision alignment of optical components. The basic ideas of the technique is to vibrate the optical fiber(s) to cause shifting of electromagnetic modes within the fiber(s) and consequent shifting of the speckle pattern in the light emerging from the fiber(s). If the frequency of vibration is high enough, a human eye cannot follow the shifting speckle pattern, so that instead of speckle, a human observer sees a smoothed pattern of light corresponding to a mixture of many electromagnetic modes. If necessary, the optical fiber(s) could be vibrated manually. However, in a typical laboratory situation, it would be more practical to attach a vibrating mechanism to the fiber(s) for routine use as part of the fiber-optic illuminator. In experiments, a commercially available small, gentle, quiet, variable- speed vibratory device was used in this way, with the result that the appearance of speckle was eliminated, as expected. Figures 1 and 2 illustrate the difference.

Organic farming favours insect-pollinated over non-insect pollinated forbs in meadows and wheat fields.

PubMed

Batáry, Péter; Sutcliffe, Laura; Dormann, Carsten F; Tscharntke, Teja

2013-01-01

The aim of this study was to determine the relative effects of landscape-scale management intensity, local management intensity and edge effect on diversity patterns of insect-pollinated vs. non-insect pollinated forbs in meadows and wheat fields. Nine landscapes were selected differing in percent intensively used agricultural area (IAA), each with a pair of organic and conventional winter wheat fields and a pair of organic and conventional meadows. Within fields, forbs were surveyed at the edge and in the interior. Both diversity and cover of forbs were positively affected by organic management in meadows and wheat fields. This effect, however, differed significantly between pollination types for species richness in both agroecosystem types (i.e. wheat fields and meadows) and for cover in meadows. Thus, we show for the first time in a comprehensive analysis that insect-pollinated plants benefit more from organic management than non-insect pollinated plants regardless of agroecosystem type and landscape complexity. These benefits were more pronounced in meadows than wheat fields. Finally, the community composition of insect-pollinated and non-insect-pollinated forbs differed considerably between management types. In summary, our findings in both agroecosystem types indicate that organic management generally supports a higher species richness and cover of insect-pollinated plants, which is likely to be favourable for the density and diversity of bees and other pollinators.

Organic Farming Favours Insect-Pollinated over Non-Insect Pollinated Forbs in Meadows and Wheat Fields

PubMed Central

Batáry, Péter; Sutcliffe, Laura; Dormann, Carsten F.; Tscharntke, Teja

2013-01-01

The aim of this study was to determine the relative effects of landscape-scale management intensity, local management intensity and edge effect on diversity patterns of insect-pollinated vs. non-insect pollinated forbs in meadows and wheat fields. Nine landscapes were selected differing in percent intensively used agricultural area (IAA), each with a pair of organic and conventional winter wheat fields and a pair of organic and conventional meadows. Within fields, forbs were surveyed at the edge and in the interior. Both diversity and cover of forbs were positively affected by organic management in meadows and wheat fields. This effect, however, differed significantly between pollination types for species richness in both agroecosystem types (i.e. wheat fields and meadows) and for cover in meadows. Thus, we show for the first time in a comprehensive analysis that insect-pollinated plants benefit more from organic management than non-insect pollinated plants regardless of agroecosystem type and landscape complexity. These benefits were more pronounced in meadows than wheat fields. Finally, the community composition of insect-pollinated and non-insect-pollinated forbs differed considerably between management types. In summary, our findings in both agroecosystem types indicate that organic management generally supports a higher species richness and cover of insect-pollinated plants, which is likely to be favourable for the density and diversity of bees and other pollinators. PMID:23382979

Incoherent averaging of phase singularities in speckle-shearing interferometry.

PubMed

Mantel, Klaus; Nercissian, Vanusch; Lindlein, Norbert

2014-08-01

Interferometric speckle techniques are plagued by the omnipresence of phase singularities, impairing the phase unwrapping process. To reduce the number of phase singularities by physical means, an incoherent averaging of multiple speckle fields may be applied. It turns out, however, that the results may strongly deviate from the expected √N behavior. Using speckle-shearing interferometry as an example, we investigate the mechanism behind the reduction of phase singularities, both by calculations and by computer simulations. Key to an understanding of the reduction mechanism during incoherent averaging is the representation of the physical averaging process in terms of certain vector fields associated with each speckle field.

Simulations of multi-contrast x-ray imaging using near-field speckles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zdora, Marie-Christine; Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom and Department of Physics & Astronomy, University College London, London, WC1E 6BT; Thibault, Pierre

2016-01-28

X-ray dark-field and phase-contrast imaging using near-field speckles is a novel technique that overcomes limitations inherent in conventional absorption x-ray imaging, i.e. poor contrast for features with similar density. Speckle-based imaging yields a wealth of information with a simple setup tolerant to polychromatic and divergent beams, and simple data acquisition and analysis procedures. Here, we present a simulation software used to model the image formation with the speckle-based technique, and we compare simulated results on a phantom sample with experimental synchrotron data. Thorough simulation of a speckle-based imaging experiment will help for better understanding and optimising the technique itself.

Net primary productivity of subalpine meadows in Yosemite National Park in relation to climate variability

Treesearch

Peggy E. Moore; Jan W. van Wagtendonk; Julie L. Yee; Mitchel P. McClaran; David N. Cole; Neil K. McDougald; Matthew L. Brooks

2013-01-01

Subalpine meadows are some of the most ecologically important components of mountain landscapes, and primary productivity is important to the maintenance of meadow functions. Understanding how changes in primary productivity are associated with variability in moisture and temperature will become increasingly important with current and anticipated changes in climate....

75 FR 26747 - Meadow Lake Wind Farm IV LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-12

... DEPARTMENT OF ENERGY Federal Energy Regulatory Commission [Docket No. ER10-1177-000] Meadow Lake Wind Farm IV LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes Request for... proceeding of Meadow Lake Wind Farm IV LLC's application for market-based rate authority, with an...

75 FR 26747 - Meadow Lake Wind Farm III LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-12

... DEPARTMENT OF ENERGY Federal Energy Regulatory Commission [ Docket No. ER10-1176-000] Meadow Lake Wind Farm III LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes Request for... proceeding of Meadow Lake Wind Farm III LLC's application for market-based rate authority, with an...

Plant biomass and species composition along an environmental gradient in montane riparian meadows

Treesearch

Kathleen A. Dwire; J. Boone Kauffman; E. N. Jack Brookshire; John E. Baham

2004-01-01

In riparian meadows, narrow zonation of the dominant vegetation frequently occurs along the elevational gradient from the stream edge to the floodplain terrace. We measured plant species composition and above- and belowground biomass in three riparian plant communities - a priori defined as wet, moist, and dry meadow - along short streamside topographic gradients in...

Response of mountain meadows to grazing by recreational pack stock

Treesearch

David N. Cole; Jan W. van Wagtendonk; Mitchel P. McClaran; Peggy E. Moore; Neil K. McDougald

2004-01-01

Effects of recreational pack stock grazing on mountain meadows in Yosemite National Park were assessed in a 5-year study. Yosemite is a designated wilderness, to be managed such that its natural conditions are preserved. Studies were conducted in 3 characteristic meadow types: shorthair sedge (Carex filifolia Nutt.), Brewer’s reed grass (...

Controls on meadow distribution and characteristics [chapter 2

Treesearch

Dru Germanoski; Jerry R. Miller; Mark L. Lord

2011-01-01

Meadow complexes are located in distinct geomorphic and hydrologic settings that allow groundwater to be at or near the ground surface during at least part of the year. Meadows are manifestations of the subsurface flow system, and their distribution is controlled by factors that cause localized zones of groundwater discharge. Knowledge of the factors that serve as...

Vole-driven restoration of a parariparian meadow complex on the Colorado Plateau (south-central Utah)

Treesearch

Dennis M. Bramble; Jean C. Bramble

2008-01-01

Rapid and substantial reductions in the local density of invasive rubber rabbitbrush (Chrysothamnus nauseosus) have been achieved on a shrub-infested meadow complex solely by manipulating grazing so as to benefit the native meadow vole, Microtus montanus. The key adjustment has been a shift from spring-summer to late season grazing...

First year results from an experimental study of the ecohydrologic benefits of beaver and beaver dam analogue restoration techniques in Childs Meadow, CA

NASA Astrophysics Data System (ADS)

Yarnell, S. M.; Pope, K.; Podolak, K.; Wolf, E.; Burnett, R.

2016-12-01

Due to extensive livestock grazing and widespread removal of beaver and willows, headwater meadows have transformed from multi-thread channels with seasonally active floodplains into single thread, incised channels that store less carbon, retain less water, and are lower in habitat quality for a diverse suite of meadow-dependent wildlife. Meadow restoration techniques often include willow planting and cattle exclosures; however, few studies have rigorously tested the long-term efficacy of these methods or evaluated alternative restoration techniques such as reintroduction of beaver or installation of beaver dam analogues (BDAs). This project seeks to evaluate the installation of BDAs as a restoration technique in Childs Meadow, a heavily grazed meadow in the Cascade Range representative of low-gradient meadows across northern California. Using a before-after-control-impact study design, the study tests the impacts of two restoration techniques (willow planting with cattle exclusion and willow planting with cattle exclusion and BDAs) on hydrology, carbon sequestration, and sensitive species. Results will be compared with measurements in an unrestored section of the meadow that currently supports an active beaver population and two imperiled species (Cascades Frog and Willow Flycatcher). One specific project objective is to measure the response of hydrogeomorphic conditions (e.g. groundwater, surface water, temperature, habitat) and Cascades Frog and Willow Flycatcher to restorative actions. Pre-treatment data was collected in summer 2015, a cattle exclosure was established and willows were planted in fall 2015, and installation of the BDAs is planned for fall 2016. Three years of post-implementation monitoring will be completed to assess impacts of the treatments. Here, we will present our sampling design and first year results following initiation of the treatments.

Baltic Sea Blue Carbon: Role of environmental factors influencing the carbon sink capacity of eelgrass (Zostera marina) meadows.

NASA Astrophysics Data System (ADS)

Röhr, E.; Holmer, M.; Boström, C.

2016-02-01

Although the global seagrass coverage area is less than 0.2 % of the worlds ocean floor, the carbon sink capacity of seagrasses may account up to 18 % of oceanic carbon burial and thus play a critical structural and functional role in many coastal ecosystems. Recent studies have shown considerable variation in the global estimates for seagrass meadow Corg accumulation rates and stocks, and indicate lack of understanding the factors influencing this variability. We sampled 20 eelgrass (Zostera marina) meadows in Finland and Denmark to study the variation in Corg accumulation rates and stocks within the Baltic Sea area. The study sites in both regions spanned a gradient from sheltered to exposed locations. The estimates for Corg accumulation rates at the Finnish eelgrass meadows were two orders of magnitude lower than the estimates for the Danish sites. The Corg stock integrated over the top 25 cm of sediment showed similar pattern, suggesting that the Finnish eelgrass meadows are carbon sources rather than carbon sinks, and the produced Corg is exported from the meadows. In contrast, at the Danish sites both Corg accumulation rates and areal Corg stock was more varying suggesting, that in this region the meadows function both as carbon sinks and sources. Our analysis further showed that a large percentage (> 55 %) of the variation in the Corg stocks was explained by sediment characteristics (density, fraction of silt and grain size distribution). In addition, the contribution of Zostera marina detritus to the sediment Corg pool explained >14 % of the variation in the Corg stocks. In order to get more reliable regional and global estimates of the role of seagrass meadows in the ocean carbon cycle, more studies accounting for the full range of environmental and species characteristics are urgently needed.

Restoration of floodplain meadows: Effects on the re-establishment of mosses.

PubMed

Michalska-Hejduk, Dorota; Wolski, Grzegorz J; Harnisch, Matthias; Otte, Annette; Bomanowska, Anna; Donath, Tobias W

2017-01-01

Vascular plants serve as target species for the evaluation of restoration success as they account for most of the plant species diversity and vegetation cover. Although bryophytes contribute considerably to the species diversity of meadows, they are rarely addressed in restoration projects. This project is a first step toward making recommendations for including mosses in alluvial floodplain restoration projects. The opportunity to assess the diversity and ecological requirements of mosses on floodplain meadows presented itself within the framework of a vegetation monitoring that took place in 2014 on meadows located along the northern Upper Rhine. In this area, large-scale meadow restoration projects have taken place since 1997 in both the functional and fossil floodplains. Other studies have shown that bryophytes are generally present in green hay used in restoration, providing inadvertent bryophyte introduction. We compared bryophyte communities in donor and restored communities and correlated these communities with environmental variables-taking into account that the mosses on the restoration sites possibly developed from green hay. This analysis provided insights as to which species of bryophytes should be included in future restoration projects, what diaspores should be used, and how they should be transferred. Data on bryophyte occurrence were gathered from old meadows, and from restoration sites. We found distinct differences in bryophyte composition (based on frequency) in restored communities in functional flood plains compared to donor communities. Generally, restoration sites are still characterized by a lower species-richness, with a significantly lower occurrence of rare and red listed species and a lower species-heterogeneity. In conclusion, our research establishes what mosses predominate in donor and restored alluvial meadows along the northern Upper River, and what microsite conditions favour particular species. This points the way to deliberate introduction of moss diaspores for more complete alluvial meadow restoration.

Restoration of floodplain meadows: Effects on the re-establishment of mosses

PubMed Central

Wolski, Grzegorz J.; Harnisch, Matthias; Otte, Annette; Bomanowska, Anna; Donath, Tobias W.

2017-01-01

Vascular plants serve as target species for the evaluation of restoration success as they account for most of the plant species diversity and vegetation cover. Although bryophytes contribute considerably to the species diversity of meadows, they are rarely addressed in restoration projects. This project is a first step toward making recommendations for including mosses in alluvial floodplain restoration projects. The opportunity to assess the diversity and ecological requirements of mosses on floodplain meadows presented itself within the framework of a vegetation monitoring that took place in 2014 on meadows located along the northern Upper Rhine. In this area, large-scale meadow restoration projects have taken place since 1997 in both the functional and fossil floodplains. Other studies have shown that bryophytes are generally present in green hay used in restoration, providing inadvertent bryophyte introduction. We compared bryophyte communities in donor and restored communities and correlated these communities with environmental variables—taking into account that the mosses on the restoration sites possibly developed from green hay. This analysis provided insights as to which species of bryophytes should be included in future restoration projects, what diaspores should be used, and how they should be transferred. Data on bryophyte occurrence were gathered from old meadows, and from restoration sites. We found distinct differences in bryophyte composition (based on frequency) in restored communities in functional flood plains compared to donor communities. Generally, restoration sites are still characterized by a lower species-richness, with a significantly lower occurrence of rare and red listed species and a lower species-heterogeneity. In conclusion, our research establishes what mosses predominate in donor and restored alluvial meadows along the northern Upper River, and what microsite conditions favour particular species. This points the way to deliberate introduction of moss diaspores for more complete alluvial meadow restoration. PMID:29227995

Statistical Approach To Extraction Of Texture In SAR

NASA Technical Reports Server (NTRS)

Rignot, Eric J.; Kwok, Ronald

1992-01-01

Improved statistical method of extraction of textural features in synthetic-aperture-radar (SAR) images takes account of effects of scheme used to sample raw SAR data, system noise, resolution of radar equipment, and speckle. Treatment of speckle incorporated into overall statistical treatment of speckle, system noise, and natural variations in texture. One computes speckle auto-correlation function from system transfer function that expresses effect of radar aperature and incorporates range and azimuth resolutions.

Speckle reduction in digital holography with resampling ring masks

NASA Astrophysics Data System (ADS)

Zhang, Wenhui; Cao, Liangcai; Jin, Guofan

2018-01-01

One-shot digital holographic imaging has the advantages of high stability and low temporal cost. However, the reconstruction is affected by the speckle noise. Resampling ring-mask method in spectrum domain is proposed for speckle reduction. The useful spectrum of one hologram is divided into several sub-spectra by ring masks. In the reconstruction, angular spectrum transform is applied to guarantee the calculation accuracy which has no approximation. N reconstructed amplitude images are calculated from the corresponding sub-spectra. Thanks to speckle's random distribution, superimposing these N uncorrelated amplitude images would lead to a final reconstructed image with lower speckle noise. Normalized relative standard deviation values of the reconstructed image are used to evaluate the reduction of speckle. Effect of the method on the spatial resolution of the reconstructed image is also quantitatively evaluated. Experimental and simulation results prove the feasibility and effectiveness of the proposed method.

Accuracy concerns in digital speckle photography combined with Fresnel digital holographic interferometry

NASA Astrophysics Data System (ADS)

Zhao, Yuchen; Zemmamouche, Redouane; Vandenrijt, Jean-François; Georges, Marc P.

2018-05-01

A combination of digital holographic interferometry (DHI) and digital speckle photography (DSP) allows in-plane and out-of-plane displacement measurement between two states of an object. The former can be determined by correlating the two speckle patterns whereas the latter is given by the phase difference obtained from DHI. We show that the amplitude of numerically reconstructed object wavefront obtained from Fresnel in-line digital holography (DH), in combination with phase shifting techniques, can be used as speckle patterns in DSP. The accuracy of in-plane measurement is improved after correcting the phase errors induced by reference wave during reconstruction process. Furthermore, unlike conventional imaging system, Fresnel DH offers the possibility to resize the pixel size of speckle patterns situated on the reconstruction plane under the same optical configuration simply by zero-padding the hologram. The flexibility of speckle size adjustment in Fresnel DH ensures the accuracy of estimation result using DSP.

Prediction of venous wound healing with laser speckle imaging.

PubMed

van Vuuren, Timme Maj; Van Zandvoort, Carina; Doganci, Suat; Zwiers, Ineke; tenCate-Hoek, Arina J; Kurstjens, Ralph Lm; Wittens, Cees Ha

2017-12-01

Introduction Laser speckle imaging is used for noninvasive assessment of blood flow of cutaneous wounds. The aim of this study was to assess if laser speckle imaging can be used as a predictor of venous ulcer healing. Methods After generating the flux speckle images, three regions of interest (ROI) were identified to measure the flow. Sensitivity, specificity, negative predictive value, and positive predictive value for ulcer healing were calculated. Results In total, 17 limbs were included. A sensitivity of 92.3%, specificity of 75.0%, PPV of 80.0%, and NPV 75.0% were found in predicting wound healing based on laser speckle images. Mean flux values were lowest in the center (ROI I) and showed an increase at the wound edge (ROI II, p = 0.03). Conclusion Laser speckle imaging shows acceptable sensitivity and specificity rates in predicting venous ulcer healing. The wound edge proved to be the best probability for the prediction of wound healing.

Experiment evaluation of speckle suppression efficiency of 2D quasi-spiral M-sequence-based diffractive optical element.

PubMed

Lapchuk, A; Pashkevich, G A; Prygun, O V; Yurlov, V; Borodin, Y; Kryuchyn, A; Korchovyi, A A; Shylo, S

2015-10-01

The quasi-spiral 2D diffractive optical element (DOE) based on M-sequence of length N=15 is designed and manufactured. The speckle suppression efficiency by the DOE rotation is measured. The speckle suppression coefficients of 10.5, 6, and 4 are obtained for green, violet, and red laser beams, respectively. The results of numerical simulation and experimental data show that the quasi-spiral binary DOE structure can be as effective in speckle reduction as a periodic 2D DOE structure. The numerical simulation and experimental results show that the speckle suppression efficiency of the 2D DOE structure decreases approximately twice at the boundaries of the visible range. It is shown that a replacement of this structure with the bilateral 1D DOE allows obtaining the maximum speckle suppression efficiency in the entire visible range of light.

Experimental infection of meadow voles (Microtus pennsylvanicus) with sheep scrapie

USGS Publications Warehouse

Carlson, CM; Schneider, Jay R.; Pedersen, Janice C.; Heisey, Dennis M.; Johnson, Christopher J.

2015-01-01

Meadow voles (Microtus pennsylvanicus) are permissive to chronic wasting disease (CWD) infection, but their susceptibility to other transmissible spongiform encephalopathies (TSEs) is poorly characterized. In this initial study, we intracerebrally challenged 6 meadow voles with 2 isolates of sheep scrapie. Three meadow voles acquired a TSE after the scrapie challenge and an extended incubation period. The glycoform profile of proteinase K-resistant prion protein (PrP(res)) in scrapie-sick voles remained similar to the sheep inocula, but differed from that of voles clinically affected by CWD. Vacuolization patterns and disease-associated prion protein (PrP(Sc)) deposition were generally similar in all scrapie-affected voles, except in the hippocampus, where PrP(Sc) staining varied markedly among the animals. Our results demonstrate that meadow voles can acquire a TSE after intracerebral scrapie challenge and that this species could therefore prove useful for characterizing scrapie isolates.

Learning of speckle statistics for in vivo and noninvasive characterization of cutaneous wound regions using laser speckle contrast imaging.

PubMed

Basak, Kausik; Dey, Goutam; Mahadevappa, Manjunatha; Mandal, Mahitosh; Sheet, Debdoot; Dutta, Pranab Kumar

2016-09-01

Laser speckle contrast imaging (LSCI) provides a noninvasive and cost effective solution for in vivo monitoring of blood flow. So far, most of the researches consider changes in speckle pattern (i.e. correlation time of speckle intensity fluctuation), account for relative change in blood flow during abnormal conditions. This paper introduces an application of LSCI for monitoring wound progression and characterization of cutaneous wound regions on mice model. Speckle images are captured on a tumor wound region at mice leg in periodic interval. Initially, raw speckle images are converted to their corresponding contrast images. Functional characterization begins with first segmenting the affected area using k-means clustering, taking wavelet energies in a local region as feature set. In the next stage, different regions in wound bed are clustered based on progressive and non-progressive nature of tissue properties. Changes in contrast due to heterogeneity in tissue structure and functionality are modeled using LSCI speckle statistics. Final characterization is achieved through supervised learning of these speckle statistics using support vector machine. On cross evaluation with mice model experiment, the proposed approach classifies the progressive and non-progressive wound regions with an average sensitivity of 96.18%, 97.62% and average specificity of 97.24%, 96.42% respectively. The clinical information yield with this approach is validated with the conventional immunohistochemistry result of wound to justify the ability of LSCI for in vivo, noninvasive and periodic assessment of wounds. Copyright © 2016 Elsevier Inc. All rights reserved.

Statistical characterization of speckle noise in coherent imaging systems

NASA Astrophysics Data System (ADS)

Yaroslavsky, Leonid; Shefler, A.

2003-05-01

Speckle noise imposes fundamental limitation on image quality in coherent radiation based imaging and optical metrology systems. Speckle noise phenomena are associated with properties of objects to diffusely scatter irradiation and with the fact that in recording the wave field, a number of signal distortions inevitably occur due to technical limitations inherent to hologram sensors. The statistical theory of speckle noise was developed with regard to only limited resolving power of coherent imaging devices. It is valid only asymptotically as much as the central limit theorem of the probability theory can be applied. In applications this assumption is not always applicable. Moreover, in treating speckle noise problem one should also consider other sources of the hologram deterioration. In the paper, statistical properties of speckle due to the limitation of hologram size, dynamic range and hologram signal quantization are studied by Monte-Carlo simulation for holograms recorded in near and far diffraction zones. The simulation experiments have shown that, for limited resolving power of the imaging system, widely accepted opinion that speckle contrast is equal to one holds only for rather severe level of the hologram size limitation. For moderate limitations, speckle contrast changes gradually from zero for no limitation to one for limitation to less than about 20% of hologram size. The results obtained for the limitation of the hologram sensor"s dynamic range and hologram signal quantization reveal that speckle noise due to these hologram signal distortions is not multiplicative and is directly associated with the severity of the limitation and quantization. On the base of the simulation results, analytical models are suggested.

Modeling laser speckle imaging of perfusion in the skin (Conference Presentation)

NASA Astrophysics Data System (ADS)

Regan, Caitlin; Hayakawa, Carole K.; Choi, Bernard

2016-02-01

Laser speckle imaging (LSI) enables visualization of relative blood flow and perfusion in the skin. It is frequently applied to monitor treatment of vascular malformations such as port wine stain birthmarks, and measure changes in perfusion due to peripheral vascular disease. We developed a computational Monte Carlo simulation of laser speckle contrast imaging to quantify how tissue optical properties, blood vessel depths and speeds, and tissue perfusion affect speckle contrast values originating from coherent excitation. The simulated tissue geometry consisted of multiple layers to simulate the skin, or incorporated an inclusion such as a vessel or tumor at different depths. Our simulation used a 30x30mm uniform flat light source to optically excite the region of interest in our sample to better mimic wide-field imaging. We used our model to simulate how dynamically scattered photons from a buried blood vessel affect speckle contrast at different lateral distances (0-1mm) away from the vessel, and how these speckle contrast changes vary with depth (0-1mm) and flow speed (0-10mm/s). We applied the model to simulate perfusion in the skin, and observed how different optical properties, such as epidermal melanin concentration (1%-50%) affected speckle contrast. We simulated perfusion during a systolic forearm occlusion and found that contrast decreased by 35% (exposure time = 10ms). Monte Carlo simulations of laser speckle contrast give us a tool to quantify what regions of the skin are probed with laser speckle imaging, and measure how the tissue optical properties and blood flow affect the resulting images.

Speckle: Friend or foe?

NASA Astrophysics Data System (ADS)

Goodman, Joseph W.

2013-05-01

Speckle appears whenever coherent radiation of any kind is used. We review here the basic properties of speckle, the negative effects it has on imaging systems of various kinds, and the positive benefits it offers in certain nondestructive testing and metrology problems.

Shear wave arrival time estimates correlate with local speckle pattern.

PubMed

Mcaleavey, Stephen A; Osapoetra, Laurentius O; Langdon, Jonathan

2015-12-01

We present simulation and phantom studies demonstrating a strong correlation between errors in shear wave arrival time estimates and the lateral position of the local speckle pattern in targets with fully developed speckle. We hypothesize that the observed arrival time variations are largely due to the underlying speckle pattern, and call the effect speckle bias. Arrival time estimation is a key step in quantitative shear wave elastography, performed by tracking tissue motion via cross-correlation of RF ultrasound echoes or similar methods. Variations in scatterer strength and interference of echoes from scatterers within the tracking beam result in an echo that does not necessarily describe the average motion within the beam, but one favoring areas of constructive interference and strong scattering. A swept-receive image, formed by fixing the transmit beam and sweeping the receive aperture over the region of interest, is used to estimate the local speckle pattern. Metrics for the lateral position of the speckle are found to correlate strongly (r > 0.7) with the estimated shear wave arrival times both in simulations and in phantoms. Lateral weighting of the swept-receive pattern improved the correlation between arrival time estimates and speckle position. The simulations indicate that high RF echo correlation does not equate to an accurate shear wave arrival time estimate-a high correlation coefficient indicates that motion is being tracked with high precision, but the location tracked is uncertain within the tracking beam width. The presence of a strong on-axis speckle is seen to imply high RF correlation and low bias. The converse does not appear to be true-highly correlated RF echoes can still produce biased arrival time estimates. The shear wave arrival time bias is relatively stable with variations in shear wave amplitude and sign (-20 μm to 20 μm simulated) compared with the variation with different speckle realizations obtained along a given tracking vector. We show that the arrival time bias is weakly dependent on shear wave amplitude compared with the variation with axial position/ local speckle pattern. Apertures of f/3 to f/8 on transmit and f/2 and f/4 on receive were simulated. Arrival time error and correlation with speckle pattern are most strongly determined by the receive aperture.

Shear Wave Arrival Time Estimates Correlate with Local Speckle Pattern

PubMed Central

McAleavey, Stephen A.; Osapoetra, Laurentius O.; Langdon, Jonathan

2016-01-01

We present simulation and phantom studies demonstrating a strong correlation between errors in shear wave arrival time estimates and the lateral position of the local speckle pattern in targets with fully developed speckle. We hypothesize that the observed arrival time variations are largely due to the underlying speckle pattern, and call the effect speckle bias. Arrival time estimation is a key step in quantitative shear wave elastography, performed by tracking tissue motion via cross correlation of RF ultrasound echoes or similar methods. Variations in scatterer strength and interference of echoes from scatterers within the tracking beam result in an echo that does not necessarily describe the average motion within the beam, but one favoring areas of constructive interference and strong scattering. A swept-receive image, formed by fixing the transmit beam and sweeping the receive aperture over the region of interest, is used to estimate the local speckle pattern. Metrics for the lateral position of the speckle are found to correlate strongly (r>0.7) with the estimated shear wave arrival times both in simulations and in phantoms. Lateral weighting of the swept-receive pattern improved the correlation between arrival time estimates and speckle position. The simulations indicate that high RF echo correlation does not equate to an accurate shear wave arrival time estimate – a high correlation coefficient indicates that motion is being tracked with high precision, but the location tracked is uncertain within the tracking beam width. The presence of a strong on-axis speckle is seen to imply high RF correlation and low bias. The converse does not appear to be true – highly correlated RF echoes can still produce biased arrival time estimates. The shear wave arrival time bias is relatively stable with variations in shear wave amplitude and sign (−20 μm to 20 μm simulated) compared to the variation with different speckle realizations obtained along a given tracking vector. We show that the arrival time bias is weakly dependent on shear wave amplitude compared to the variation with axial position/local speckle pattern. Apertures of f/3 to f/8 on transmit and f/2 and f/4 on receive were simulated. Arrival time error and correlation with speckle pattern are most strongly determined by the receive aperture. PMID:26670847

A maximum likelihood approach to diffeomorphic speckle tracking for 3D strain estimation in echocardiography.

PubMed

Curiale, Ariel H; Vegas-Sánchez-Ferrero, Gonzalo; Bosch, Johan G; Aja-Fernández, Santiago

2015-08-01

The strain and strain-rate measures are commonly used for the analysis and assessment of regional myocardial function. In echocardiography (EC), the strain analysis became possible using Tissue Doppler Imaging (TDI). Unfortunately, this modality shows an important limitation: the angle between the myocardial movement and the ultrasound beam should be small to provide reliable measures. This constraint makes it difficult to provide strain measures of the entire myocardium. Alternative non-Doppler techniques such as Speckle Tracking (ST) can provide strain measures without angle constraints. However, the spatial resolution and the noisy appearance of speckle still make the strain estimation a challenging task in EC. Several maximum likelihood approaches have been proposed to statistically characterize the behavior of speckle, which results in a better performance of speckle tracking. However, those models do not consider common transformations to achieve the final B-mode image (e.g. interpolation). This paper proposes a new maximum likelihood approach for speckle tracking which effectively characterizes speckle of the final B-mode image. Its formulation provides a diffeomorphic scheme than can be efficiently optimized with a second-order method. The novelty of the method is threefold: First, the statistical characterization of speckle generalizes conventional speckle models (Rayleigh, Nakagami and Gamma) to a more versatile model for real data. Second, the formulation includes local correlation to increase the efficiency of frame-to-frame speckle tracking. Third, a probabilistic myocardial tissue characterization is used to automatically identify more reliable myocardial motions. The accuracy and agreement assessment was evaluated on a set of 16 synthetic image sequences for three different scenarios: normal, acute ischemia and acute dyssynchrony. The proposed method was compared to six speckle tracking methods. Results revealed that the proposed method is the most accurate method to measure the motion and strain with an average median motion error of 0.42 mm and a median strain error of 2.0 ± 0.9%, 2.1 ± 1.3% and 7.1 ± 4.9% for circumferential, longitudinal and radial strain respectively. It also showed its capability to identify abnormal segments with reduced cardiac function and timing differences for the dyssynchrony cases. These results indicate that the proposed diffeomorphic speckle tracking method provides robust and accurate motion and strain estimation. Copyright © 2015. Published by Elsevier B.V.

Color speckle in laser displays

NASA Astrophysics Data System (ADS)

Kuroda, Kazuo

2015-07-01

At the beginning of this century, lighting technology has been shifted from discharge lamps, fluorescent lamps and electric bulbs to solid-state lighting. Current solid-state lighting is based on the light emitting diodes (LED) technology, but the laser lighting technology is developing rapidly, such as, laser cinema projectors, laser TVs, laser head-up displays, laser head mounted displays, and laser headlamps for motor vehicles. One of the main issues of laser displays is the reduction of speckle noise1). For the monochromatic laser light, speckle is random interference pattern on the image plane (retina for human observer). For laser displays, RGB (red-green-blue) lasers form speckle patterns independently, which results in random distribution of chromaticity, called color speckle2).

Correlated tuning of the speckle pattern in an interferometer based on a multimode fiber-optic waveguide

NASA Astrophysics Data System (ADS)

Bykovskii, Iu. A.; Kul'Chin, Iu. N.; Obukh, V. F.; Smirnov, V. L.

1990-08-01

The correlated tuning of the speckle pattern in the radiation field of a single-fiber multimode interferometer is investigated experimentally and analytically in the presence of external action. It is found that correlated changes in the speckle pattern are observed in both the near and the far emission fields of the waveguide. An expression is obtained which provides a way to determine the maximum size of the speckle correlation region. The use of spatial filtering for isolating the effect of correlated speckle pattern tuning is suggested. It is shown that the use of a spatial filter makes it possible to increase the efficiency of fiber-optic transducers.

Differential high-speed digital micromirror device based fluorescence speckle confocal microscopy.

PubMed

Jiang, Shihong; Walker, John

2010-01-20

We report a differential fluorescence speckle confocal microscope that acquires an image in a fraction of a second by exploiting the very high frame rate of modern digital micromirror devices (DMDs). The DMD projects a sequence of predefined binary speckle patterns to the sample and modulates the intensity of the returning fluorescent light simultaneously. The fluorescent light reflecting from the DMD's "on" and "off" pixels is modulated by correlated speckle and anticorrelated speckle, respectively, to form two images on two CCD cameras in parallel. The sum of the two images recovers a widefield image, but their difference gives a near-confocal image in real time. Experimental results for both low and high numerical apertures are shown.

Ten Years of Change in Sierran Stringer Meadows: An Evaluation of Range Condition Models

Treesearch

Barbara H. Allen

1989-01-01

Grazed Sierra Nevada stringer meadow systems were sampled on Blodgett Forest Research Station in northern California between 1977 and 1987 to determine cattle use, and to examine changes in production and species composition over time. Utilization of meadow species averaged 61 percent over the 10 years, but use increased to more than 80 percent utilization after 1985....

Shorthair meadows in the high Sierra Nevada...an hypothesis of their development

Treesearch

Raymond D. Ratliff

1973-01-01

Bands of shorthair meadow are found around lakes in the high Sierra Nevada of California. A hypothesis, based on observations in the Kings Canyon National Park, to explain the development of these meadows is offered: Boulders form the foundation upon which American-laurel, Sierra bilberry, and moss combine to produce thick mats. The lower layers of the mats are...

REACH SPECIFIC CHANNEL STABILIZATION BASED ON COMPREHENSIVE EVALUATION OF VALLEY FILL HISTORY, ALLUVIAL ARCHITECTURE AND GROUNDWATER HYDROLOGY IN A MOUNTAIN STREAM IN THE CENTRAL GREAT BASIN, NEVADA

EPA Science Inventory

Kingston meadow, located in the Toiyabe Range, is one of many wet meadow complexes threatened by rapid channel incision in the mountain ranges of the central Great Basin. Channel incision can lower the baselevel for groundwater discharge and de-water meadow complexes resulting in...

Decadal changes in the structure of Cymodocea nodosa seagrass meadows: Natural vs. human influences

NASA Astrophysics Data System (ADS)

Tuya, Fernando; Ribeiro-Leite, Luís; Arto-Cuesta, Noelia; Coca, Josep; Haroun, Ricardo; Espino, Fernando

2014-01-01

Seagrass meadows are deteriorating worldwide. However, numerous declines are still unreported, which avoid accurate evaluations of seagrass global trends. This is particularly relevant for the western African coast and nearby oceanic archipelagos in the eastern Atlantic. The seagrass Cymodocea nodosa is an 'ecological engineer' on shallow soft bottoms of the Canary Islands. A comparative decadal study was conducted in 21 C. nodosa seagrass meadows at Gran Canaria Island to compare the structure (shoot density, leaf length and cover) between 2003 and 2012. Overall, 11 meadows exhibited a severe regression, while 10 remained relatively stable. During this period, natural influences (sea surface temperature, Chlorophyll-a concentration and PAR light, as well as the number of storm episodes detaching seagrasses) had a low predictive power on temporal patterns in seagrass structure. In contrast, proximity from a range of human-mediated influences (e.g. the number of outfalls and ports) seem to be related to the loss of seagrass; the rate of seagrass erosion between 2003 and 2012 was significantly predicted by the number of human-mediated impacts around each meadow. This result highlights promoting management actions to conserve meadows of C. nodosa at the study region through efficient management of local impacts.

Man-induced transformation of mountain meadow soils of Aragats mountain massif (Armenia)

NASA Astrophysics Data System (ADS)

Avetisyan, M. H.

2018-01-01

The article considers issues of degradation of mountain meadow soils of the Aragats mountain massif of the Republic of Armenia and provides the averaged research results obtained for 2013 and 2014. The present research was initiated in the frames of long-term complex investigations of agroecosystems of Armenia’s mountain massifs and covered sod soils of high mountain meadow pasturelands and meadow steppe grasslands lying on southern slope of Mt. Aragats. With a purpose of studying the peculiarities of migration and transformation of flows of major nutrients namely carbon, nitrogen, phosphorus in study mountain meadow and meadow steppe belts of the Aragats massif we investigated water migration of chemical elements and regularities of their leaching depending on different belts. Field measurement data have indicated that organic carbon and humus in a heavily grazed plot are almost twice as low as on a control site. Lysimetric data analysis has demonstrated that heavy grazing and illegal deforestation have brought to an increase in intrasoil water acidity. The results generated from this research support a conclusion that a man’s intervention has brought to disturbance of structure and nutrient and water regimes of soils and loss of significant amounts of soil nutrients throughout the studied region.

Alpine plant community controls on ecosystem N pools under the influence of N deposition using an enriched 15N tracer experiment

NASA Astrophysics Data System (ADS)

Churchill, A. C.; Bowman, W. D.

2016-12-01

Plant communities are assemblages of species with unique traits, and by comparing different communities we can infer how those traits affect ecosystem processes. In particular, plant feedbacks affecting the N cycle can drive processing of N in numerous pools within an ecosystem, both as individuals and as a part of the larger community. Global nitrogen (N) deposition rates have increased dramatically since the industrial revolution and an understanding of how plant feedbacks may contribute to ecosystem responses is needed. We used an enriched 15N isotope tracer to compare ecosystem N pools associated with plant processing of N among three alpine plant communities (dry, moist, and wet meadows) with diverse characteristics. We applied NH4NO3 as a fertilizer at two treatment levels, ambient deposition (control) and 30 kg N ha-1 yr-1 (fertilized) and collected measurements of enrichment in ecosystem plant and soil N pools following two growing seasons after our application of the isotopic tracer (fall 2014 and fall 2015). We found that the 15N enrichment (‰) of aboveground plant litter declined in all communities between 2014 and 2015, with greater loss of enrichment in fertilized plots in both the dry and wet meadow communities. This decline between years is expected, as litter is decomposed or if plants translocate N into belowground structures, however these results suggest that increased N deposition promotes plant N leakiness for communities with higher species diversity. Despite this trend, aboveground litter from fertilized plots remained more enriched than controls in both the dry and wet meadow communities, perhaps associated with overall greater capacity of those plant individuals to retain N. For control plots, the 15N enrichment of aboveground plant litter was comparable among the dry and moist communities, but the wet meadow was more enriched relative to the moist meadow. Fertilized plots showed a different pattern of enrichment: moist meadow < dry meadow < wet meadow. In both instances microbial processing of soil N may promote enrichment of plant available N during the growing season following our tracer application, however moist meadows have more water availability than dry meadows suggesting examination of other N pools will be necessary to determine where the tracer is being stabilized.

Development of principles of two-cascaded laser speckle-microscopy with implication to high-precision express diagnostics of chlamydial infection

NASA Astrophysics Data System (ADS)

Ulianova, Onega; Moiseeva, Yulia; Filonova, Nadezhda; Subbotina, Irina; Zaitsev, Sergey; Saltykov, Yury; Polyanina, Tatiana; Lyapina, Anna; Ulyanov, Sergey; Larionova, Olga; Utz, Sergey; Feodorova, Valentina

2018-04-01

Principles of two-cascaded laser speckle-microscopy prospect for application to express diagnostics of chlamydial infection are developed. Prototype of two-cascaded speckle-microscope is designed and tested. Specific case of illumination of bacterial cells by dynamic speckles is considered. Express method of detection of epithelial cells, containing defects, which are caused by Chlamydia trachomatis bacteria, is suggested. Results of improved recognition of C. trachomatis bacteria are discussed.

Genotypic Diversity and Short-term Response to Shading Stress in a Threatened Seagrass: Does Low Diversity Mean Low Resilience?

PubMed

Evans, Suzanna M; Vergés, Adriana; Poore, Alistair G B

2017-01-01

Seagrasses that are predominantly clonal often have low levels of genetic variation within populations and predicting their response to changing conditions requires an understanding of whether genetic variation confers increased resistance to environmental stressors. A higher level of genetic diversity is assumed to benefit threatened species due to the increased likelihood of those populations having genotypes that can persist under environmental change. To test this idea, we conducted an in situ shading experiment with six geographically distinct meadows of the threatened seagrass Posidonia australis that vary in genetic diversity. Different genotypes within meadows varied widely in their physiological and growth responses to reduced light during a simulated short-term turbidity event. The majority of meadows were resistant to the sudden reduction in light availability, but a small subset of meadows with low genotypic diversity were particularly vulnerable to the early effects of shading, showing substantially reduced growth rates after only 3 weeks. Using the photosynthetic performance (maximum quantum yield) of known genotypes, we simulated meadows of varying genetic diversity to show that higher diversity can increase meadow resilience to stress by ensuring a high probability of including a high-performing genotype. These results support the hypothesis that complementarity among genotypes enhances the adaptive capacity of a population, and have significant implications for the conservation of declining P. australis meadows close to the species range edge on the east coast of Australia, where the genotypic diversity is low.

Resilience and stability of Cymodocea nodosa seagrass meadows over the last four decades in a Mediterranean lagoon

NASA Astrophysics Data System (ADS)

Garrido, Marie; Lafabrie, Céline; Torre, Franck; Fernandez, Catherine; Pasqualini, Vanina

2013-09-01

Understanding what controls the capacity of a coastal lagoon ecosystem to recover following climatic and anthropogenic perturbations and how these perturbations can alter this capacity is critical to efficient environmental management. The goal of this study was to examine the resilience and stability of Cymodocea nodosa-dominated seagrass meadows in Urbino lagoon (Corsica, Mediterranean Sea) by characterizing the spatio-temporal dynamics of seagrass meadows over a 40-year period and comparing (anthropogenic and climatic) environmental fluctuations. The spatio-temporal evolution of seagrass meadows was investigated using previous maps (1973, 1979, 1990, 1994, 1996, 1999) and a 2011 map realized by aerial photography-remote sensing combined with GIS technology. Environmental fluctuation was investigated via physical-chemical parameters (rainfall, water temperature, salinity, turbidity, dissolved oxygen) and human-impact changes (aquaculture, artificial channel). The results showed a severe decline (estimated at -49%) in seagrass meadows between 1973 and 1994 followed by a period of strong recovery (estimated to +42%) between 1994 and 2011. Increased turbidity, induced either by rainfall events, dredging or phytoplankton growth, emerged as the most important driver of the spatio-temporal evolution of Cymodocea nodosa-dominated meadows in Urbino lagoon over the last four decades. Climate events associated to increased turbidity and reduced salinity and temperature could heavily impact seagrass dynamics. This study shows that Urbino lagoon, a system relatively untouched by human impact, shelters seagrass meadows that exhibit high resilience and stability.

Genotypic Diversity and Short-term Response to Shading Stress in a Threatened Seagrass: Does Low Diversity Mean Low Resilience?

PubMed Central

Evans, Suzanna M.; Vergés, Adriana; Poore, Alistair G. B.

2017-01-01

Seagrasses that are predominantly clonal often have low levels of genetic variation within populations and predicting their response to changing conditions requires an understanding of whether genetic variation confers increased resistance to environmental stressors. A higher level of genetic diversity is assumed to benefit threatened species due to the increased likelihood of those populations having genotypes that can persist under environmental change. To test this idea, we conducted an in situ shading experiment with six geographically distinct meadows of the threatened seagrass Posidonia australis that vary in genetic diversity. Different genotypes within meadows varied widely in their physiological and growth responses to reduced light during a simulated short-term turbidity event. The majority of meadows were resistant to the sudden reduction in light availability, but a small subset of meadows with low genotypic diversity were particularly vulnerable to the early effects of shading, showing substantially reduced growth rates after only 3 weeks. Using the photosynthetic performance (maximum quantum yield) of known genotypes, we simulated meadows of varying genetic diversity to show that higher diversity can increase meadow resilience to stress by ensuring a high probability of including a high-performing genotype. These results support the hypothesis that complementarity among genotypes enhances the adaptive capacity of a population, and have significant implications for the conservation of declining P. australis meadows close to the species range edge on the east coast of Australia, where the genotypic diversity is low. PMID:28855915

Elasticity imaging of speckle-free tissue regions with moving acoustic radiation force and phase-sensitive optical coherence tomography

NASA Astrophysics Data System (ADS)

Hsieh, Bao-Yu; Song, Shaozhen; Nguyen, Thu-Mai; Yoon, Soon Joon; Shen, Tueng; Wang, Ruikang; O'Donnell, Matthew

2016-03-01

Phase-sensitive optical coherence tomography (PhS-OCT) can be utilized for quantitative shear-wave elastography using speckle tracking. However, current approaches cannot directly reconstruct elastic properties in speckle-less or speckle-free regions, for example within the crystalline lens in ophthalmology. Investigating the elasticity of the crystalline lens could improve understanding and help manage presbyopia-related pathologies that change biomechanical properties. We propose to reconstruct the elastic properties in speckle-less regions by sequentially launching shear waves with moving acoustic radiation force (mARF), and then detecting the displacement at a specific speckle-generating position, or limited set of positions, with PhS-OCT. A linear ultrasound array (with a center frequency of 5 MHz) interfaced with a programmable imaging system was designed to launch shear waves by mARF. Acoustic sources were electronically translated to launch shear waves at laterally shifted positions, where displacements were detected by speckle tracking images produced by PhS-OCT operating in M-B mode with a 125-kHz A-line rate. Local displacements were calculated and stitched together sequentially based on the distance between the acoustic source and the detection beam. Shear wave speed, and the associated elasticity map, were then reconstructed based on a time-of-flight algorithm. In this study, moving-source shear wave elasticity imaging (SWEI) can highlight a stiff inclusion within an otherwise homogeneous phantom but with a CNR increased by 3.15 dB compared to a similar image reconstructed with moving-detector SWEI. Partial speckle-free phantoms were also investigated to demonstrate that the moving-source sequence could reconstruct the elastic properties of speckle-free regions. Results show that harder inclusions within the speckle-free region can be detected, suggesting that this imaging method may be able to detect the elastic properties of the crystalline lens.

Transesophageal Speckle-Tracking Echocardiography Improves Right Ventricular Systolic Function Assessment in the Perioperative Setting.

PubMed

Markin, Nicholas W; Chamsi-Pasha, Mohammed; Luo, Jiangtao; Thomas, Walker R; Brakke, Tara R; Porter, Thomas R; Shillcutt, Sasha K

2017-02-01

Perioperative evaluation of right ventricular (RV) systolic function is important to follow intraoperative changes, but it is often not possible to assess with transthoracic echocardiographic (TTE) imaging, because of surgical field constraints. Echocardiographic RV quantification is most commonly performed using tricuspid annular plane systolic excursion (TAPSE), but it is not clear whether this method works with transesophageal echocardiographic (TEE) imaging. This study was performed to evaluate the relationship between TTE and TEE TAPSE distances measured with M-mode imaging and in comparison with speckle-tracking TTE and TEE measurements. Prospective observational TTE and TEE imaging was performed during elective cardiac surgical procedures in 100 subjects. Speckle-tracking echocardiographic TAPSE distances were determined and compared with the TTE M-mode TAPSE standard. Both an experienced and an inexperienced user of the speckle-tracking echocardiographic software evaluated the images, to enable interobserver assessment in 84 subjects. The comparison between TTE M-mode TAPSE and TEE M-mode TAPSE demonstrated significant variability, with a Spearman correlation of 0.5 and a mean variance in measurement of 6.5 mm. There was equivalence within data pairs and correlations between TTE M-mode TAPSE and both speckle-tracking TTE and speckle-tracking TEE TAPSE, with Spearman correlations of 0.65 and 0.65, respectively. The average variance in measurement was 0.6 mm for speckle-tracking TTE TAPSE and 1.5 mm for speckle-tracking TEE TAPSE. Using TTE M-mode TAPSE as a control, TEE M-mode TAPSE results are not accurate and should not be used clinically to evaluate RV systolic function. The relationship between speckle-tracking echocardiographic TAPSE and TTE M-mode TAPSE suggests that in the perioperative setting, speckle-tracking TEE TAPSE might be used to quantitatively evaluate RV systolic function in the absence of TTE imaging. Copyright © 2016 American Society of Echocardiography. Published by Elsevier Inc. All rights reserved.

Cerebral capillary velocimetry based on temporal OCT speckle contrast.

PubMed

Choi, Woo June; Li, Yuandong; Qin, Wan; Wang, Ruikang K

2016-12-01

We propose a new optical coherence tomography (OCT) based method to measure red blood cell (RBC) velocities of single capillaries in the cortex of rodent brain. This OCT capillary velocimetry exploits quantitative laser speckle contrast analysis to estimate speckle decorrelation rate from the measured temporal OCT speckle signals, which is related to microcirculatory flow velocity. We hypothesize that OCT signal due to sub-surface capillary flow can be treated as the speckle signal in the single scattering regime and thus its time scale of speckle fluctuations can be subjected to single scattering laser speckle contrast analysis to derive characteristic decorrelation time. To validate this hypothesis, OCT measurements are conducted on a single capillary flow phantom operating at preset velocities, in which M-mode B-frames are acquired using a high-speed OCT system. Analysis is then performed on the time-varying OCT signals extracted at the capillary flow, exhibiting a typical inverse relationship between the estimated decorrelation time and absolute RBC velocity, which is then used to deduce the capillary velocities. We apply the method to in vivo measurements of mouse brain, demonstrating that the proposed approach provides additional useful information in the quantitative assessment of capillary hemodynamics, complementary to that of OCT angiography.

Kitt Peak Speckle Interferometry of Close Visual Binary Stars (Abstract)

NASA Astrophysics Data System (ADS)

Gener, R.; Rowe, D.; Smith, T. C.; Teiche, A.; Harshaw, R.; Wallace, D.; Weise, E.; Wiley, E.; Boyce, G.; Boyce, P.; Branston, D.; Chaney, K.; Clark, R. K.; Estrada, C.; Estrada, R.; Frey, T.; Green, W. L.; Haurberg, N.; Jones, G.; Kenney, J.; Loftin, S.; McGieson, I.; Patel, R.; Plummer, J.; Ridgely, J.; Trueblood, M.; Westergren, D.; Wren, P.

2014-12-01

(Abstract only) Speckle interferometry can be used to overcome normal seeing limitations by taking many very short exposures at high magnification and analyzing the resulting speckles to obtain the position angles and separations of close binary stars. A typical speckle observation of a close binary consists of 1,000 images, each 20 milliseconds in duration. The images are stored as a multi-plane FITS cube. A portable speckle interferometry system that features an electron-multiplying CCD camera was used by the authors during two week-long observing runs on the 2.1-meter telescope at Kitt Peak National Observatory to obtain some 1,000 data cubes of close binaries selected from a dozen different research programs. Many hundreds of single reference stars were also observed and used in deconvolution to remove undesirable atmospheric and telescope optical effects. The database of well over one million images was reduced with the Speckle Interferometry Tool of platesolve3. A few sample results are provided. During the second Kitt Peak run, the McMath-Pierce 1.6- and 0.8-meter solar telescopes were evaluated for nighttime speckle interferometry, while the 0.8-meter Coude feed was used to obtain differential radial velocities of short arc binaries.

Kitt Peak Speckle Interferometry of Close Visual Binary Stars

NASA Astrophysics Data System (ADS)

Genet, Russell M.; Rowe, David; Smith, Thomas C.; Teiche, Alex; Harshaw, Richard; Wallace, Daniel; Weise, Eric; Wiley, Edward; Boyce, Grady; Boyce, Patrick; Branston, Detrick; Chaney, Kayla; Clark, R. Kent; Estrada, Chris; Frey, Thomas; Estrada, Reed; Green, Wayne; Haurberg, Nathalie; Kenney, John; Jones, Greg; Loftin, Sheri; McGieson, Izak; Patel, Rikita; Plummer, Josh; Ridgely, John; Trueblood, Mark; Westergren, Donald; Wren, Paul

2015-09-01

Speckle interferometry can be used to overcome normal seeing limitations by taking many very short exposures at high magnification and analyzing the resulting speckles to obtain the position angles and separations of close binary stars. A typical speckle observation of a close binary consists of 1000 images, each 20 milliseconds in duration. The images are stored as a multi-plane FITS cube. A portable speckle interferometry system that features an electronmultiplying CCD camera was used by the authors during two week-long observing runs on the 2.1-meter telescope at Kitt Peak National Observatory to obtain some 1000 data cubes of close binaries selected from a dozen different research programs. Many hundreds of single reference stars were also observed and used in deconvolution to remove undesirable atmospheric and telescope optical effects. The data base of well over one million images was reduced with the Speckle Interferometry Tool of PlateSolve 3. A few sample results are provided. During the second Kitt Peak run, the McMath-Pierce 1.6- and 0.8-meter solar telescopes were evaluated for nighttime speckle interferometry, while the 0.8-meter Coude feed was used to obtain differential radial velocities of short arc binaries.

Fractality of pulsatile flow in speckle images

NASA Astrophysics Data System (ADS)

Nemati, M.; Kenjeres, S.; Urbach, H. P.; Bhattacharya, N.

2016-05-01

The scattering of coherent light from a system with underlying flow can be used to yield essential information about dynamics of the process. In the case of pulsatile flow, there is a rapid change in the properties of the speckle images. This can be studied using the standard laser speckle contrast and also the fractality of images. In this paper, we report the results of experiments performed to study pulsatile flow with speckle images, under different experimental configurations to verify the robustness of the techniques for applications. In order to study flow under various levels of complexity, the measurements were done for three in-vitro phantoms and two in-vivo situations. The pumping mechanisms were varied ranging from mechanical pumps to the human heart for the in vivo case. The speckle images were analyzed using the techniques of fractal dimension and speckle contrast analysis. The results of these techniques for the various experimental scenarios were compared. The fractal dimension is a more sensitive measure to capture the complexity of the signal though it was observed that it is also extremely sensitive to the properties of the scattering medium and cannot recover the signal for thicker diffusers in comparison to speckle contrast.

Effects of photon noise on speckle image reconstruction with the Knox-Thompson algorithm. [in astronomy

NASA Technical Reports Server (NTRS)

Nisenson, P.; Papaliolios, C.

1983-01-01

An analysis of the effects of photon noise on astronomical speckle image reconstruction using the Knox-Thompson algorithm is presented. It is shown that the quantities resulting from the speckle average arre biased, but that the biases are easily estimated and compensated. Calculations are also made of the convergence rate for the speckle average as a function of the source brightness. An illustration of the effects of photon noise on the image recovery process is included.

Optical Logarithmic Transformation of Speckle Images with Bacteriorhodopsin Films

NASA Technical Reports Server (NTRS)

Downie, John D.

1995-01-01

The application of logarithmic transformations to speckle images is sometimes desirable in converting the speckle noise distribution into an additive, constant-variance noise distribution. The optical transmission properties of some bacteriorhodopsin films are well suited to implement such a transformation optically in a parallel fashion. I present experimental results of the optical conversion of a speckle image into a transformed image with signal-independent noise statistics, using the real-time photochromic properties of bacteriorhodopsin. The original and transformed noise statistics are confirmed by histogram analysis.

Deviations from Rayleigh statistics in ultrasonic speckle.

PubMed

Tuthill, T A; Sperry, R H; Parker, K J

1988-04-01

The statistics of speckle patterns in ultrasound images have potential for tissue characterization. In "fully developed speckle" from many random scatterers, the amplitude is widely recognized as possessing a Rayleigh distribution. This study examines how scattering populations and signal processing can produce non-Rayleigh distributions. The first order speckle statistics are shown to depend on random scatterer density and the amplitude and spacing of added periodic scatterers. Envelope detection, amplifier compression, and signal bandwidth are also shown to cause distinct changes in the signal distribution.

Spatio-temporal patterns of tree establishment are indicative of biotic interactions during early invasion of a montane meadow

Treesearch

J.M. Rice; C.B. Halpern; J.A. Antos; J.A. Jones

2012-01-01

Tree invasions of grasslands are occurring globally, with profound consequences for ecosystem structure and function. We explore the spatio-temporal dynamics of tree invasion of a montane meadow in the Cascade Mountains of Oregon, where meadow loss is a conservation concern. We examine the early stages of invasion, where extrinsic and intrinsic processes can be clearly...

The Economic Benefits of Elk Viewing at the Jewell Meadows Wildlife Area in Oregon

Treesearch

Geoffrey Donovan; Patricia Champ

2009-01-01

In this study, a travel cost model is used to estimate the value of elk viewing at the Jewell Meadows Wildlife Area in Oregon. Jewell Meadows was originally established to provide winter browse and supplemental feeding for elk to reduce damage to nearby agricultural and forest land. However, because visitors are virtually guaranteed the opportunity to see large numbers...

Grassland restoration with and without fire: evidence from a tree-removal experiment.

PubMed

Halpern, Charles B; Haugo, Ryan D; Antos, Joseph A; Kaas, Sheena S; Kilanowski, Allyssa L

2012-03-01

Forest encroachment threatens the biological diversity of grasslands globally. Positive feedbacks can reinforce the process, affecting soils and ground vegetation, ultimately leading to replacement of grassland by forest species. We tested whether restoration treatments (tree removal, with or without fire) reversed effects of nearly two centuries of encroachment by Abies grandis and Pinus contorta into dry, montane meadows in the Cascade Range, Oregon, USA. In nine, 1-ha plots containing a patchy mosaic of meadow openings and forests of varying age (20 to > 140 yr), we compared three treatments affecting the ground vegetation: control (no trees removed), unburned (trees removed, slash burned in piles leaving 90% of the area unburned), and burned (trees removed, slash broadcast burned). We quantified changes over 3-4 years in soils, abundance and richness of species with differing habitat associations (meadow, forest, and ruderal), and recruitment of conifers. Except for a transient increase in available N (especially in burn scars), effects of burning on soils were minimal due, in part, to mixing by gophers. Tree removal greatly benefited meadow species at the expense of forest herbs. Cover and richness of meadow species increased by 47% and 38% of initial values in unburned plots, but changed minimally in burned plots. In contrast, cover and richness of forest herbs declined by 44% and 26% in unburned plots and by 79% and 58% in burned plots. Ruderal species and conifer seedlings were uncommon in both treatments. Although vegetation was consumed beneath burn piles, meadow species recovered significantly after three years. Long-term tree presence did not preclude recovery of meadow species; in fact, colonization was greater in older than in younger forests. In sum, temporal trends were positive for most indicators, suggesting strong potential for restoration. Contrary to conventional wisdom, tree removal without fire may be sufficient to shift the balance from forest to meadow species. In meadows characterized by historically infrequent fire, small-scale disturbances and competitive interactions may be more critical to ecosystem maintenance and restoration. Managers facing the worldwide phenomenon of tree invasion should critically evaluate the ecological vs. operational need for fire in ecosystem restoration.

Using MODIS data for understanding changes in seagrass meadow health: a case study in the Great Barrier Reef (Australia).

PubMed

Petus, Caroline; Collier, Catherine; Devlin, Michelle; Rasheed, Michael; McKenna, Skye

2014-07-01

Stretching more than 2000 km along the Queensland coast, the Great Barrier Reef Marine Park (GBR) shelters over 43,000 square km of seagrass meadows. Despite the status of marine protected area and World Heritage listing of the GBR, local seagrass meadows are under stress from reduced water quality levels; with reduction in the amount of light available for seagrass photosynthesis defined as the primary cause of seagrass loss throughout the GBR. Methods have been developed to map GBR plume water types by using MODIS quasi-true colour (hereafter true colour) images reclassified in function of their dominant colour. These data can be used as an interpretative tool for understanding changes in seagrass meadow health (as defined in this study by the seagrass area and abundance) at different spatial and temporal scales. We tested this method in Cleveland Bay, in the northern GBR, where substantial loss in seagrass area and biomass was detected by annual monitoring from 2007 to 2011. A strong correlation was found between bay-wide seagrass meadow area and biomass and exposure to turbid Primary (sediment-dominated) water type. There was also a strong correlation between the changes of biomass and area of individual meadows and exposure of seagrass ecosystems to Primary water type over the 5-year period. Seagrass meadows were also grouped according to the dominant species within each meadow, irrespective of location within Cleveland Bay. These consolidated community types did not correlate well with the exposure to Primary water type, and this is likely to be due to local environmental conditions with the individual meadows that comprise these groupings. This study proved that remote sensing data provide the synoptic window and repetitivity required to investigate changes in water quality conditions over time. Remote sensing data provide an opportunity to investigate the risk of marine-coastal ecosystems to light limitation due to increased water turbidity when in situ water quality data is not available or is insufficient. Copyright © 2014 Elsevier Ltd. All rights reserved.

Speckle tracking and speckle content based composite strain imaging for solid and fluid filled lesions.

PubMed

Rabbi, Md Shifat-E; Hasan, Md Kamrul

2017-02-01

Strain imaging though for solid lesions provides an effective way for determining their pathologic condition by displaying the tissue stiffness contrast, for fluid filled lesions such an imaging is yet an open problem. In this paper, we propose a novel speckle content based strain imaging technique for visualization and classification of fluid filled lesions in elastography after automatic identification of the presence of fluid filled lesions. Speckle content based strain, defined as a function of speckle density based on the relationship between strain and speckle density, gives an indirect strain value for fluid filled lesions. To measure the speckle density of the fluid filled lesions, two new criteria based on oscillation count of the windowed radio frequency signal and local variance of the normalized B-mode image are used. An improved speckle tracking technique is also proposed for strain imaging of the solid lesions and background. A wavelet-based integration technique is then proposed for combining the strain images from these two techniques for visualizing both the solid and fluid filled lesions from a common framework. The final output of our algorithm is a high quality composite strain image which can effectively visualize both solid and fluid filled breast lesions in addition to the speckle content of the fluid filled lesions for their discrimination. The performance of our algorithm is evaluated using the in vivo patient data and compared with recently reported techniques. The results show that both the solid and fluid filled lesions can be better visualized using our technique and the fluid filled lesions can be classified with good accuracy. Copyright © 2016 Elsevier B.V. All rights reserved.

Quantitative measurement of thin phase objects: comparison of speckle deflectometry and defocus-variant lateral shear interferometry.

PubMed

Sjodahl, Mikael; Amer, Eynas

2018-05-10

The two techniques of lateral shear interferometry and speckle deflectometry are analyzed in a common optical system for their ability to measure phase gradient fields of a thin phase object. The optical system is designed to introduce a shear in the frequency domain of a telecentric imaging system that gives a sensitivity of both techniques in proportion to the defocus introduced. In this implementation, both techniques successfully measure the horizontal component of the phase gradient field. The response of both techniques scales linearly with the defocus distance, and the precision is comparative, with a random error in the order of a few rad/mm. It is further concluded that the precision of the two techniques relates to the transverse speckle size in opposite ways. While a large spatial coherence width, and correspondingly a large lateral speckle size, makes lateral shear interferometry less susceptible to defocus, a large lateral speckle size is detrimental for speckle correlation. The susceptibility for the magnitude of the defocus is larger for the lateral shear interferometry technique as compared to the speckle deflectometry technique. The two techniques provide the same type of information; however, there are a few fundamental differences. Lateral shear interferometry relies on a special hardware configuration in which the shear angle is intrinsically integrated into the system. The design of a system sensitive to both in-plane phase gradient components requires a more complex configuration and is not considered in this paper. Speckle deflectometry, on the other hand, requires no special hardware, and both components of the phase gradient field are given directly from the measured speckle deformation field.

A hybrid algorithm for speckle noise reduction of ultrasound images.

PubMed

Singh, Karamjeet; Ranade, Sukhjeet Kaur; Singh, Chandan

2017-09-01

Medical images are contaminated by multiplicative speckle noise which significantly reduce the contrast of ultrasound images and creates a negative effect on various image interpretation tasks. In this paper, we proposed a hybrid denoising approach which collaborate the both local and nonlocal information in an efficient manner. The proposed hybrid algorithm consist of three stages in which at first stage the use of local statistics in the form of guided filter is used to reduce the effect of speckle noise initially. Then, an improved speckle reducing bilateral filter (SRBF) is developed to further reduce the speckle noise from the medical images. Finally, to reconstruct the diffused edges we have used the efficient post-processing technique which jointly considered the advantages of both bilateral and nonlocal mean (NLM) filter for the attenuation of speckle noise efficiently. The performance of proposed hybrid algorithm is evaluated on synthetic, simulated and real ultrasound images. The experiments conducted on various test images demonstrate that our proposed hybrid approach outperforms the various traditional speckle reduction approaches included recently proposed NLM and optimized Bayesian-based NLM. The results of various quantitative, qualitative measures and by visual inspection of denoise synthetic and real ultrasound images demonstrate that the proposed hybrid algorithm have strong denoising capability and able to preserve the fine image details such as edge of a lesion better than previously developed methods for speckle noise reduction. The denoising and edge preserving capability of hybrid algorithm is far better than existing traditional and recently proposed speckle reduction (SR) filters. The success of proposed algorithm would help in building the lay foundation for inventing the hybrid algorithms for denoising of ultrasound images. Copyright © 2017 Elsevier B.V. All rights reserved.

Multiscale analysis of the intensity fluctuation in a time series of dynamic speckle patterns.

PubMed

Federico, Alejandro; Kaufmann, Guillermo H

2007-04-10

We propose the application of a method based on the discrete wavelet transform to detect, identify, and measure scaling behavior in dynamic speckle. The multiscale phenomena presented by a sample and displayed by its speckle activity are analyzed by processing the time series of dynamic speckle patterns. The scaling analysis is applied to the temporal fluctuation of the speckle intensity and also to the two derived data sets generated by its magnitude and sign. The application of the method is illustrated by analyzing paint-drying processes and bruising in apples. The results are discussed taking into account the different time organizations obtained for the scaling behavior of the magnitude and the sign of the intensity fluctuation.

Dynamic laser speckle angiography achieved by eigen-decomposition filtering.

PubMed

Li, Chenxi; Wang, Ruikang

2017-06-01

A new approach is proposed for statistically analysis of laser speckle signals emerged from a living biological tissue based on eigen-decomposition to separate the dynamic speckle signals due to moving blood cells from the static speckle signals due to static tissue components, upon which to achieve angiography of the interrogated tissue in vivo. The proposed approach is tested by imaging mouse ear pinna in vivo, demonstrating its capability of providing detailed microvascular networks with high contrast, and high temporal and spatial resolutions. It is expected to provide further opportunities for laser speckle imaging in the biomedical and clinical applications where microvascular response to certain stimulus or tissue injury is of interest. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Noise adaptive wavelet thresholding for speckle noise removal in optical coherence tomography.

PubMed

Zaki, Farzana; Wang, Yahui; Su, Hao; Yuan, Xin; Liu, Xuan

2017-05-01

Optical coherence tomography (OCT) is based on coherence detection of interferometric signals and hence inevitably suffers from speckle noise. To remove speckle noise in OCT images, wavelet domain thresholding has demonstrated significant advantages in suppressing noise magnitude while preserving image sharpness. However, speckle noise in OCT images has different characteristics in different spatial scales, which has not been considered in previous applications of wavelet domain thresholding. In this study, we demonstrate a noise adaptive wavelet thresholding (NAWT) algorithm that exploits the difference of noise characteristics in different wavelet sub-bands. The algorithm is simple, fast, effective and is closely related to the physical origin of speckle noise in OCT image. Our results demonstrate that NAWT outperforms conventional wavelet thresholding.

[Methods for Reducing Laser Speckles to Achieve Even Illumination of the Microscope Field of View in Biophysical Studies].

PubMed

Barsky, V E; Lysov, Yu P; Yegorov, E E; Yurasov, D A; Mamaev, D D; Yurasov, R A; Cherepanov, A V; Chudinov, A V; Smoldovskaya, O V; Arefieva, A S; Rubina, A Yu; Zasedatelev, A S

2015-01-01

The aim of this work was to compare different speckle reduction techniques. It was shown that the use of devices based on liquid crystals only leads to partial reduction of speckle contrast. In quantitative luminescent microscopy an application of the mechanical devices when a laser beam is spread within the field of view turned out to be more efficient. Laser speckle noise was virtually eliminated with the developed and manufactured mechanical device comprising a fiber optic ring light guide and the vibrator that permits movement of optical fiber ends towards the laser diode during measurements. The method developed for the analysis of microarrays was successfully applied to the problem of speckle reduction.

Speckle noise suppression method in holographic display using time multiplexing

NASA Astrophysics Data System (ADS)

Liu, Su-Juan; Wang, Di; Li, Song-Jie; Wang, Qiong-Hua

2017-06-01

We propose a method to suppress the speckle noise in holographic display using time multiplexing. The diffractive optical elements (DOEs) and the subcomputer-generated holograms (sub-CGHs) are generated, respectively. The final image is reconstructed using time multiplexing of the subimages and the final subimages. Meanwhile, the speckle noise of the final image is suppressed by reducing the coherence of the reconstructed light and separating the adjacent image points in space. Compared with the pixel separation method, the experiments demonstrate that the proposed method suppresses the speckle noise effectively with less calculation burden and lower demand for frame rate of the spatial light modulator. In addition, with increases of the DOEs and the sub-CGHs, the speckle noise is further suppressed.

Aerosol speckle effects on atmospheric pulsed lidar backscattered signals

NASA Technical Reports Server (NTRS)

Murty, S. R.

1989-01-01

Lidar systems using atmospheric aerosols as targets exhibit return signal amplitude and power fluctuations which indicate speckle effects. The effects of refractive turbulence along the path on the aerosol speckle field propagation and on the decorrelation time are studied for coherent pulsed lidar systems.

OCT Amplitude and Speckle Statistics of Discrete Random Media.

PubMed

Almasian, Mitra; van Leeuwen, Ton G; Faber, Dirk J

2017-11-01

Speckle, amplitude fluctuations in optical coherence tomography (OCT) images, contains information on sub-resolution structural properties of the imaged sample. Speckle statistics could therefore be utilized in the characterization of biological tissues. However, a rigorous theoretical framework relating OCT speckle statistics to structural tissue properties has yet to be developed. As a first step, we present a theoretical description of OCT speckle, relating the OCT amplitude variance to size and organization for samples of discrete random media (DRM). Starting the calculations from the size and organization of the scattering particles, we analytically find expressions for the OCT amplitude mean, amplitude variance, the backscattering coefficient and the scattering coefficient. We assume fully developed speckle and verify the validity of this assumption by experiments on controlled samples of silica microspheres suspended in water. We show that the OCT amplitude variance is sensitive to sub-resolution changes in size and organization of the scattering particles. Experimentally determined and theoretically calculated optical properties are compared and in good agreement.

Effect of static scatterers in laser speckle contrast imaging: an experimental study on correlation and contrast.

PubMed

Vaz, Pedro G; Humeau-Heurtier, Anne; Figueiras, Edite; Correia, Carlos; Cardoso, João

2017-12-29

Laser speckle contrast imaging (LSCI) is a non-invasive microvascular blood flow assessment technique with good temporal and spatial resolution. Most LSCI systems, including commercial devices, can perform only qualitative blood flow evaluation, which is a major limitation of this technique. There are several factors that prevent the utilization of LSCI as a quantitative technique. Among these factors, we can highlight the effect of static scatterers. The goal of this work was to study the influence of differences in static and dynamic scatterer concentration on laser speckle correlation and contrast. In order to achieve this, a laser speckle prototype was developed and tested using an optical phantom with various concentrations of static and dynamic scatterers. It was found that the laser speckle correlation could be used to estimate the relative concentration of static/dynamic scatterers within a sample. Moreover, the speckle correlation proved to be independent of the dynamic scatterer velocity, which is a fundamental characteristic to be used in contrast correction.

High-brightness laser imaging with tunable speckle reduction enabled by electroactive micro-optic diffusers.

PubMed

Farrokhi, Hamid; Rohith, Thazhe Madam; Boonruangkan, Jeeranan; Han, Seunghwoi; Kim, Hyunwoong; Kim, Seung-Woo; Kim, Young-Jin

2017-11-10

High coherence of lasers is desirable in high-speed, high-resolution, and wide-field imaging. However, it also causes unavoidable background speckle noise thus degrades the image quality in traditional microscopy and more significantly in interferometric quantitative phase imaging (QPI). QPI utilizes optical interference for high-precision measurement of the optical properties where the speckle can severely distort the information. To overcome this, we demonstrated a light source system having a wide tunability in the spatial coherence over 43% by controlling the illumination angle, scatterer's size, and the rotational speed of an electroactive-polymer rotational micro-optic diffuser. Spatially random phase modulation was implemented for the lower speckle imaging with over a 50% speckle reduction without a significant degradation in the temporal coherence. Our coherence control technique will provide a unique solution for a low-speckle, full-field, and coherent imaging in optically scattering media in the fields of healthcare sciences, material sciences and high-precision engineering.

Optimized digital speckle patterns for digital image correlation by consideration of both accuracy and efficiency.

PubMed

Chen, Zhenning; Shao, Xinxing; Xu, Xiangyang; He, Xiaoyuan

2018-02-01

The technique of digital image correlation (DIC), which has been widely used for noncontact deformation measurements in both the scientific and engineering fields, is greatly affected by the quality of speckle patterns in terms of its performance. This study was concerned with the optimization of the digital speckle pattern (DSP) for DIC in consideration of both the accuracy and efficiency. The root-mean-square error of the inverse compositional Gauss-Newton algorithm and the average number of iterations were used as quality metrics. Moreover, the influence of subset sizes and the noise level of images, which are the basic parameters in the quality assessment formulations, were also considered. The simulated binary speckle patterns were first compared with the Gaussian speckle patterns and captured DSPs. Both the single-radius and multi-radius DSPs were optimized. Experimental tests and analyses were conducted to obtain the optimized and recommended DSP. The vector diagram of the optimized speckle pattern was also uploaded as reference.

Applications of polarization speckle in skin cancer detection and monitoring

NASA Astrophysics Data System (ADS)

Lee, Tim K.; Tchvialeva, Lioudmila; Phillips, Jamie; Louie, Daniel C.; Zhao, Jianhua; Wang, Wei; Lui, Harvey; Kalia, Sunil

2018-01-01

Polarization speckle is a rapidly developed field. Unlike laser speckle, polarization speckle consists of stochastic interference patterns with spatially random polarizations, amplitudes and phases. We have been working in this exciting research field, developing techniques to generate polarization patterns from skin. We hypothesize that polarization speckle patterns could be used in biomedical applications, especially, for detecting and monitoring skin cancers, the most common neoplasmas for white populations around the world. This paper describes our effort in developing two polarization speckle devices. One of them captures the Stokes parameters So and S1 simultaneously, and another one captures all four Stokes parameters So, S1, S2, and S3 in one-shot, within milliseconds. Hence these two devices could be used in medical clinics and assessed skin conditions in-vivo. In order to validate our hypothesis, we conducted a series of three clinical studies. These are early pilot studies, and the results suggest that the devices have potential to detect and monitor skin cancers.

Linear dark field control: simulation for implementation and testing on the UA wavefront control testbed

NASA Astrophysics Data System (ADS)

Miller, Kelsey; Guyon, Olivier

2016-07-01

This paper presents the early-stage simulation results of linear dark field control (LDFC) as a new approach to maintaining a stable dark hole within a stellar post-coronagraphic PSF. In practice, conventional speckle nulling is used to create a dark hole in the PSF, and LDFC is then employed to maintain the dark field by using information from the bright speckle field. The concept exploits the linear response of the bright speckle intensity to wavefront variations in the pupil, and therefore has many advantages over conventional speckle nulling as a method for stabilizing the dark hole. In theory, LDFC is faster, more sensitive, and more robust than using conventional speckle nulling techniques, like electric field conjugation, to maintain the dark hole. In this paper, LDFC theory, linear bright speckle characterization, and first results in simulation are presented as an initial step toward the deployment of LDFC on the UA Wavefront Control testbed in the coming year.

The Speckle Toolbox: A Powerful Data Reduction Tool for CCD Astrometry

NASA Astrophysics Data System (ADS)

Harshaw, Richard; Rowe, David; Genet, Russell

2017-01-01

Recent advances in high-speed low-noise CCD and CMOS cameras, coupled with breakthroughs in data reduction software that runs on desktop PCs, has opened the domain of speckle interferometry and high-accuracy CCD measurements of double stars to amateurs, allowing them to do useful science of high quality. This paper describes how to use a speckle interferometry reduction program, the Speckle Tool Box (STB), to achieve this level of result. For over a year the author (Harshaw) has been using STB (and its predecessor, Plate Solve 3) to obtain measurements of double stars based on CCD camera technology for pairs that are either too wide (the stars not sharing the same isoplanatic patch, roughly 5 arc-seconds in diameter) or too faint to image in the coherence time required for speckle (usually under 40ms). This same approach - using speckle reduction software to measure CCD pairs with greater accuracy than possible with lucky imaging - has been used, it turns out, for several years by the U. S. Naval Observatory.

Speckle pattern sequential extraction metric for estimating the focus spot size on a remote diffuse target.

PubMed

Yu, Zhan; Li, Yuanyang; Liu, Lisheng; Guo, Jin; Wang, Tingfeng; Yang, Guoqing

2017-11-10

The speckle pattern (line by line) sequential extraction (SPSE) metric is proposed by the one-dimensional speckle intensity level crossing theory. Through the sequential extraction of received speckle information, the speckle metrics for estimating the variation of focusing spot size on a remote diffuse target are obtained. Based on the simulation, we will give some discussions about the SPSE metric range of application under the theoretical conditions, and the aperture size will affect the metric performance of the observation system. The results of the analyses are verified by the experiment. This method is applied to the detection of relative static target (speckled jitter frequency is less than the CCD sampling frequency). The SPSE metric can determine the variation of the focusing spot size over a long distance, moreover, the metric will estimate the spot size under some conditions. Therefore, the monitoring and the feedback of far-field spot will be implemented laser focusing system applications and help the system to optimize the focusing performance.

Point-wise and whole-field laser speckle intensity fluctuation measurements applied to botanical specimens

NASA Astrophysics Data System (ADS)

Zhao, Yang; Wang, Junlan; Wu, Xiaoping; Williams, Fred W.; Schmidt, Richard J.

1997-12-01

Based on multi-scattering speckle theory, the speckle fields generated by plant specimens irradiated by laser light have been studied using a pointwise method. In addition, a whole-field method has been developed with which entire botanical specimens may be studied. Results are reported from measurements made on tomato and apple fruits, orange peel, leaves of tobacco seedlings, leaves of shihu seedlings (a Chinese medicinal herb), soy-bean sprouts, and leaves from an unidentified trailing houseplant. Although differences where observed in the temporal fluctuations of speckles that could be ascribed to differences in age and vitality, the growing tip of the bean sprout and the shihu seedling both generated virtually stationary speckles such as were observed from boiled orange peel and from localised heat-damaged regions on apple fruit. Our results suggest that both the identity of the botanical specimen and the site at which measurements are taken are likely to critically affect the observation or otherwise of temporal fluctuations of laser speckles.

Effect of static scatterers in laser speckle contrast imaging: an experimental study on correlation and contrast

NASA Astrophysics Data System (ADS)

Vaz, Pedro G.; Humeau-Heurtier, Anne; Figueiras, Edite; Correia, Carlos; Cardoso, João

2018-01-01

Laser speckle contrast imaging (LSCI) is a non-invasive microvascular blood flow assessment technique with good temporal and spatial resolution. Most LSCI systems, including commercial devices, can perform only qualitative blood flow evaluation, which is a major limitation of this technique. There are several factors that prevent the utilization of LSCI as a quantitative technique. Among these factors, we can highlight the effect of static scatterers. The goal of this work was to study the influence of differences in static and dynamic scatterer concentration on laser speckle correlation and contrast. In order to achieve this, a laser speckle prototype was developed and tested using an optical phantom with various concentrations of static and dynamic scatterers. It was found that the laser speckle correlation could be used to estimate the relative concentration of static/dynamic scatterers within a sample. Moreover, the speckle correlation proved to be independent of the dynamic scatterer velocity, which is a fundamental characteristic to be used in contrast correction.

Adaptive correction to the speckle correlation fringes by using a twisted-nematic liquid-crystal display.

PubMed

Hack, Erwin; Gundu, Phanindra Narayan; Rastogi, Pramod

2005-05-10

An innovative technique for reducing speckle noise and improving the intensity profile of the speckle correlation fringes is presented. The method is based on reducing the range of the modulation intensity values of the speckle interference pattern. After the fringe pattern is corrected adaptively at each pixel, a simple morphological filtering of the fringes is sufficient to obtain smoothed fringes. The concept is presented both analytically and by simulation by using computer-generated speckle patterns. The experimental verification is performed by using an amplitude-only spatial light modulator (SLM) in a conventional electronic speckle pattern interferometry setup. The optical arrangement for tuning a commercially available LCD array for amplitude-only behavior is described. The method of feedback to the LCD SLM to modulate the intensity of the reference beam in order to reduce the modulation intensity values is explained, and the resulting fringe pattern and increase in the signal-to-noise ratio are discussed.

Assessment of the biological activity of soils in the subtropical zone of Azerbaijan

NASA Astrophysics Data System (ADS)

Babaev, M. P.; Orujova, N. I.

2009-10-01

The enzymatic activity; the microbial population; and the intensities of the nitrification, ammonification, CO2emission, and cellulose decomposition were studied in gray-brown, meadow-sierozemic, meadow-forest alluvial, and yellow (zheltozem) gley soils in the subtropical zone of Azerbaijan under natural vegetation, crop rotation systems with vegetables, and permanent vegetable crops. On this basis, the biological diagnostics of these soils were suggested and the soil ecological health was evaluated. It was shown that properly chosen crop rotation systems on irrigated lands make it possible to preserve the fertility of the meadow-forest alluvial and zheltozem-gley soils and to improve the fertility of the gray-brown and meadow-sierozemic soils.

Phytomining Perspectives in Rehabilitation of Mining and Industrial Areas of South Ural

NASA Astrophysics Data System (ADS)

Timofeeva, S. S.; Ulrikh, D. V.; Timofeev, S. S.

2017-05-01

The ability of midland hawthorn (Crataegus laevigata (Poir)), common barberry (Berberis vulgaris), red elder (Sambucus racemosa), cinnamon rose (Rosa cinnamomea L.), couch grass (Elytrigia repens), crested wheat grass (Agropyron cristatum), meadow fescue (Festuca pratensis) and meadow grass (Poa pratensis) for phytoextraction of heavy metals from technogenic soil is proved in the article. The possibility of effective phytoextraction with the use of hawthorn and elder is shown. Maximum accumulation of zinc takes place in the surface mass of couch grass and meadow fescue. In regard to the conditions of South Ural, planting of elder and hawthorn with seeding of couch grass and meadow fescue is recommended for phytomining purposes.

Fluorescent speckle microscopy of microtubules: how low can you go?

PubMed

Waterman-Storer, C M; Salmon, E D

1999-12-01

Fluorescent speckle microscopy (FSM) is a new technique for visualizing the movement, assembly, and turnover of macromolecular assemblies like the cytoskeleton in living cells. In this method, contrast is created by coassembly of a small fraction of fluorescent subunits in a pool of unlabeled subunits. Random variation in association creates a nonuniform "fluorescent speckle" pattern. Fluorescent speckle movements in time-lapse recordings stand out to the eye and can be measured. Because fluorescent speckles represent fiduciary marks on the polymer lattice, FSM provides the opportunity for the first time to see the 2- and 3-dimensional trajectories of lattice movements within large arrays of polymers as well as identifying sites of assembly and disassembly of individual polymers. The technique works with either microinjection of fluorescently labeled subunits or expression of subunits ligated to green fluorescent protein (GFP). We have found for microtubules assembled in vitro that speckles containing one fluorophore can be detected and recorded using a conventional wide-field epi-fluorescence light microscope and digital imaging with a low noise cooled CCD camera. In living cells, optimal speckle contrast occurs at fractions of labeled tubulin of approximately 0.1-0.5% where the fluorescence of each speckle corresponds to one to seven fluorophores per resolvable unit (approximately 0.27 microm) in the microscope. This small fraction of labeled subunits significantly reduces out-of-focus fluorescence and greatly improves visibility of fluorescently labeled structures and their dynamics in thick regions of living cells.

A 250,000-year climatic record from great basin vein calcite: Implications for Milankovitch theory

USGS Publications Warehouse

Winograd, I.J.; Szabo, B. J.; Coplen, T.B.; Riggs, A.C.

1988-01-01

A continuous record of oxygen-18 (??18O) variations in the continental hydrosphere during the middle-to-late Pleistocene has been obtained from a uranium-series dated calcitic vein in the southern Great Basin. The vein was deposited from ground water that moved through Devils Hole - an open fault zone at Ash Meadows, Nevada - between 50 and 310 ka (thousand years ago). The configuration of the ??18O versus time curve closely resembles the marine and Antarctic ice core (Vostok) ??18O curves; however, the U-Th dates indicate that the last interglacial stage (marine oxygen isotope stage 5) began before 147 ?? 3 ka, at least 17,000 years earlier than indicated by the marine ??18O record and 7,000 years earlier than indicated by the less well dated Antarctic ??18O record. This discrepancy and other differences in the timing of key climatic events suggest that the indirectly dated marine ??18O chronology may need revision and that orbital forcing may not be the principal cause of the Pleistocene ice ages.

Utilization of drilling cuttings with extraction of ground for recultivation of disturbed soils

NASA Astrophysics Data System (ADS)

Gaevaya, E. V.; Bogaychuk, Y. E.; Tarasova, S. S.; Skipin, L. N.; Zakharova, E. V.

2017-10-01

Drilling of wells is connected with formation of the bore mud represented by the drill cutting with waste drilling mud. Bore mud has negative physical-chemical, physical and chemical properties: high content of salts, increased alkalinity, ash structure, soil overcrust, low airing, weak filterability and so on. In case of phosphogypsum adding to the bore mud, pH level decreases from the alkaline (10.5 U) to weakly alkaline 7.6 U, decrease of pH is connected with the influence of phosphogypsum acidity and neutralization of the more mud. Concentration of chloride ions and sulphate ions in reclaimed bore mud was 70±7 and 456±46 correspondingly. Presence of oil products in received soil was 198.0-219.0 mg/kg. When adding phosphogypsum, sand, sorbent and humic formulation «Rostok» to the bore mud, it has shown good germinating ability of cultures- phytomeliorants (93,3%). 100% germinating ability was observed in meadow grass with a height of overground sprouts 10.7 cm, germinating ability of red fescue was 80% with height of overground sprouts 9.6 cm.

Carbon stores from a tropical seagrass meadow in the midst of anthropogenic disturbance.

PubMed

Rozaimi, Mohammad; Fairoz, Mohammad; Hakimi, Tuan Mohamad; Hamdan, Nur Hidayah; Omar, Ramlan; Ali, Masni Mohd; Tahirin, Siti Aishah

2017-06-30

Seagrass meadows provide important carbon sequestration services but anthropogenic activities modify the natural ecosystem and inevitably lower carbon storage capacity. The tropical mixed-species meadows in the Sungai Pulai Estuary (Johor, Malaysia) are impacted by such activities. In this study, we provide baseline estimates for carbon stores analysed from sediment cores. In sediment depths up to 100cm, organic (OC) and inorganic carbon (IC) stores were 43-101MgCha -1 and 46-83MgCha -1 , respectively, and are in the lower end of global average values. The bulk of OC (53-98%) originated from seston suggesting that the meadows had low capacity to retain seagrass-derived organic matter. The species factor resulted in some variability in OC stores but did not appear to influence IC values. The low carbon stores in the meadow may be a direct result of sediment disturbances but natural biogeochemical processes are not discounted as possible causal factors. Copyright © 2017 Elsevier Ltd. All rights reserved.

Seagrass meadows globally as a coupled social-ecological system: implications for human wellbeing.

PubMed

Cullen-Unsworth, Leanne C; Nordlund, Lina Mtwana; Paddock, Jessica; Baker, Susan; McKenzie, Len J; Unsworth, Richard K F

2014-06-30

Seagrass ecosystems are diminishing worldwide and repeated studies confirm a lack of appreciation for the value of these systems. In order to highlight their value we provide the first discussion of seagrass meadows as a coupled social-ecological system on a global scale. We consider the impact of a declining resource on people, including those for whom seagrass meadows are utilised for income generation and a source of food security through fisheries support. Case studies from across the globe are used to demonstrate the intricate relationship between seagrass meadows and people that highlight the multi-functional role of seagrasses in human wellbeing. While each case underscores unique issues, these examples simultaneously reveal social-ecological coupling that transcends cultural and geographical boundaries. We conclude that understanding seagrass meadows as a coupled social-ecological system is crucial in carving pathways for social and ecological resilience in light of current patterns of local to global environmental change. Copyright © 2013 Elsevier Ltd. All rights reserved.

Does paedomorphosis contribute to prairie vole monogamy?

PubMed Central

Bushyhead, Timothy; Curtis, J. Thomas

2015-01-01

We examined skull morphology in prairie voles (Microtus ochrogaster) and meadow voles (M. pennsylvanicus), two closely related species with fundamentally different mating systems, to test the hypothesis that paedomorphosis contributes to the evolution of monogamous mating systems. Using several skull measurements, we found that the overall length:width ratio of meadow vole skulls was greater than that of prairie voles suggesting that meadow vole have longer narrower skulls. We then examined which aspects of skull morphology differed between the species and found that the ratio difference was attributable primarily to longer snout length in meadow voles. Finally, we compared adult morphology in both species to that of pups and found the prairie vole, a monogamous species, displays a more juvenile-like skull morphology than does the meadow vole, a promiscuous species. These results suggest that monogamous vole species retain more juvenile-like morphology than do promiscuous species, and thus possibly retain juvenile-like behaviors that may contribute to a monogamous mating system. PMID:26594100

Does paedomorphosis contribute to prairie vole monogamy?

PubMed

Bushyhead, Timothy; Curtis, J Thomas

We examined skull morphology in prairie voles ( Microtus ochrogaster ) and meadow voles ( M. pennsylvanicus ), two closely related species with fundamentally different mating systems, to test the hypothesis that paedomorphosis contributes to the evolution of monogamous mating systems. Using several skull measurements, we found that the overall length:width ratio of meadow vole skulls was greater than that of prairie voles suggesting that meadow vole have longer narrower skulls. We then examined which aspects of skull morphology differed between the species and found that the ratio difference was attributable primarily to longer snout length in meadow voles. Finally, we compared adult morphology in both species to that of pups and found the prairie vole, a monogamous species, displays a more juvenile-like skull morphology than does the meadow vole, a promiscuous species. These results suggest that monogamous vole species retain more juvenile-like morphology than do promiscuous species, and thus possibly retain juvenile-like behaviors that may contribute to a monogamous mating system.

Speckle-Suppression Apparatus

NASA Technical Reports Server (NTRS)

Taback, Israel

1989-01-01

Technique and apparatus developed to reduce speckle in unmodulated laser pulses, using reduced number of optical fibers. Expected to decrease costs of bundles of optical fibers used to transmit unmodulated laser pulses. New apparatus reduces speckle in optically transmitted, unmodulated laser input pulse by introducing number of independent delays into pulse.

Effects of Spring Drought on Carbon Sequestration, Evapotranspiration and Water Use Efficiency in the Songnen Meadow Steppe in Northeast China.

Treesearch

Gang Dong; Jixun Guo; Jiquan Chen; Ge Sun; Song Gao; et al

2011-01-01

Global climate change projections suggest an increasing frequency of droughts and extreme rain events in the steppes of the Eurasian region. Using the eddy covariance method, we measured carbon and water balances of a meadow steppe ecosystem in Northeast China during 2 years which had contrasting precipitation patterns in spring seasons in 2007 and 2008. The meadow...

Effects of hydrological regime on development of Carex wet meadows in East Dongting Lake, a Ramsar Wetland for wintering waterbirds

PubMed Central

Jing, Lei; Lu, Cai; Xia, Yan; Shi, Linlu; Zuo, Aojie; Lei, Jialing; Zhang, Hong; Lei, Guangchun; Wen, Li

2017-01-01

Wet meadows are one of the most important ecological components in floodplain, and are among the most dynamic ecosystems. Understanding the development of wet meadows and contributing environmental factors can provide better support for wetland management. Carex meadows in East Dongting Lake National Nature Reserve (EDLNNR) provide vital wintering ground for thousands of migratory waterbirds, and their ecological functions are under threated due to hydrological alternation. We measured wet meadow expansion in EDLNNR from 1989 to 2014, and explored its responses to hydrological and climatic factors within the generalised additive models (GAM) framework. We found an overall expansion of wet meadows over the study period. However, in contrast to many previous studies, our results showed that water level fluctuations at the hydrologic indicator site had only limited impacts on their development. Instead, sampling year, timing of water level recession, and local rainfall exerted significant effects. The effects of sampling year reflected the changes in sedimentation within Dongting Lake; and effects of timing of water withdrawal might be explained by the life history of the dominant sedge species. Our study suggested that the impacts of large scale hydrological alternation on vegetation may operate indirectly through its effects on sediment balance. PMID:28165508

Seagrass meadows in a globally changing environment.

PubMed

Unsworth, Richard K F; van Keulen, Mike; Coles, Rob G

2014-06-30

Seagrass meadows are valuable ecosystem service providers that are now being lost globally at an unprecedented rate, with water quality and other localised stressors putting their future viability in doubt. It is therefore critical that we learn more about the interactions between seagrass meadows and future environmental change in the anthropocene. This needs to be with particular reference to the consequences of poor water quality on ecosystem resilience and the effects of change on trophic interactions within the food web. Understanding and predicting the response of seagrass meadows to future environmental change requires an understanding of the natural long-term drivers of change and how these are currently influenced by anthropogenic stress. Conservation management of coastal and marine ecosystems now and in the future requires increased knowledge of how seagrass meadows respond to environmental change, and how they can be managed to be resilient to these changes. Finding solutions to such issues also requires recognising people as part of the social-ecological system. This special issue aims to further enhance this knowledge by bringing together global expertise across this field. The special issues considers issues such as ecosystem service delivery of seagrass meadows, the drivers of long-term seagrass change and the socio-economic consequences of environmental change to seagrass. Copyright © 2014 Elsevier Ltd. All rights reserved.

Impact of mooring activities on carbon stocks in seagrass meadows

PubMed Central

Serrano, O.; Ruhon, R.; Lavery, P. S.; Kendrick, G. A.; Hickey, S.; Masqué, P.; Arias-Ortiz, A.; Steven, A.; Duarte, C. M.

2016-01-01

Boating activities are one of the causes that threaten seagrass meadows and the ecosystem services they provide. Mechanical destruction of seagrass habitats may also trigger the erosion of sedimentary organic carbon (Corg) stocks, which may contribute to increasing atmospheric CO2. This study presents the first estimates of loss of Corg stocks in seagrass meadows due to mooring activities in Rottnest Island, Western Australia. Sediment cores were sampled from seagrass meadows and from bare but previously vegetated sediments underneath moorings. The Corg stores have been compromised by the mooring deployment from 1930s onwards, which involved both the erosion of existing sedimentary Corg stores and the lack of further accumulation of Corg. On average, undisturbed meadows had accumulated ~6.4 Kg Corg m−2 in the upper 50 cm-thick deposits at a rate of 34 g Corg m−2 yr−1. The comparison of Corg stores between meadows and mooring scars allows us to estimate a loss of 4.8 kg Corg m−2 in the 50 cm-thick deposits accumulated over ca. 200 yr as a result of mooring deployments. These results provide key data for the implementation of Corg storage credit offset policies to avoid the conversion of seagrass ecosystems and contribute to their preservation. PMID:26979407

Vegetation changes associated with a population irruption by Roosevelt elk

USGS Publications Warehouse

Starns, H D; Weckerly, Floyd W.; Ricca, Mark; Duarte, Adam

2015-01-01

Interactions between large herbivores and their food supply are central to the study of population dynamics. We assessed temporal and spatial patterns in meadow plant biomass over a 23-year period for meadow complexes that were spatially linked to three distinct populations of Roosevelt elk (Cervus elaphus roosevelti) in northwestern California. Our objectives were to determine whether the plant community exhibited a tolerant or resistant response when elk population growth became irruptive. Plant biomass for the three meadow complexes inhabited by the elk populations was measured using Normalized Difference Vegetation Index (NDVI), which was derived from Landsat 5 Thematic Mapper imagery. Elk populations exhibited different patterns of growth through the time series, whereby one population underwent a complete four-stage irruptive growth pattern while the other two did not. Temporal changes in NDVI for the meadow complex used by the irruptive population suggested a decline in forage biomass during the end of the dry season and a temporal decline in spatial variation of NDVI at the peak of plant biomass in May. Conversely, no such patterns were detected in the meadow complexes inhabited by the nonirruptive populations. Our findings suggest that the meadow complex used by the irruptive elk population may have undergone changes in plant community composition favoring plants that were resistant to elk grazing.

Evaluating mountain meadow groundwater response to Pinyon-Juniper and temperature in a great basin watershed

USGS Publications Warehouse

Carroll, Rosemary W.H.; Huntington, Justin L.; Snyder, Keirith A.; Niswonger, Richard G.; Morton, Charles; Stringham, Tamzen K.

2017-01-01

This research highlights development and application of an integrated hydrologic model (GSFLOW) to a semiarid, snow-dominated watershed in the Great Basin to evaluate Pinyon-Juniper (PJ) and temperature controls on mountain meadow shallow groundwater. The work used Google Earth Engine Landsat satellite and gridded climate archives for model evaluation. Model simulations across three decades indicated that the watershed operates on a threshold response to precipitation (P) >400 mm/y to produce a positive yield (P-ET; 9%) resulting in stream discharge and a rebound in meadow groundwater levels during these wetter years. Observed and simulated meadow groundwater response to large P correlates with above average predicted soil moisture and with a normalized difference vegetation index threshold value >0.3. A return to assumed pre-expansion PJ conditions or an increase in temperature to mid-21st century shifts yielded by only ±1% during the multi-decade simulation period; but changes of approximately ±4% occurred during wet years. Changes in annual yield were largely dampened by the spatial and temporal redistribution of evapotranspiration across the watershed: Yet the influence of this redistribution and vegetation structural controls on snowmelt altered recharge to control water table depth in the meadow. Even a small-scale removal of PJ (0.5 km2) proximal to the meadow will promote a stable, shallow groundwater system resilient to droughts, while modest increases in temperature will produce a meadow susceptible to declining water levels and a community structure likely to move toward dry and degraded conditions.

Studies on Halimeda

NASA Astrophysics Data System (ADS)

Drew, Edward A.; Abel, Kay M.

1988-03-01

Large areas of the inter-reefal seabed in the Great Barrier Reef are carpeted with vegetation composed almost entirely of the green calcareous alga Halineda. These meadows occur principally in the northern sections between 11°30' and 15°35'S at depths of 20 to 40 m, but there are also some in the central and southern sections, where they have been found at depths down to 96 m. The vegetation is dominated by the same sprawling Halimeda species that are common on coral reefs in this region. However, on reefs these species grow on solid substrata, not soft sediments like the Halimeda-rich gravels that underlie the meadows. A total of 12 Halimeda species, together with two Udotea and one Penicillus species, are characteristic components of the shallow meadows. Below 50 m depth, species composition is restricted to only two major components. One, H. copiosa, is also important shallower, but the other is an unusually large and heavily calcified form of H. fragilis, a species that is normally a minor, fragile component of the shallow meadows. The maximum biomass found in these meadows was 4637 gm2 of calcareous algae, although the thean for vegetated areas was 525 gm2. These meadows are confined to the nutrient-depleted waters of the outer continental shelf just inside the outer barrier reefs, and are usually associated with distinct shoaling of the seabed caused by accumulation of thick deposits of calcareous Halimeda segments. The meadows are probably supported by very localized upwelling of nutrients from the adjacent Coral Sea onto the shelf, where they enrich the otherwise nutrient-depleted waters.

The influence of permanently submerged macrophytes on sediment mercury distribution, mobility and methylation potential in a brackish Norwegian fjord.

PubMed

Olsen, Marianne; Schaanning, Morten Thorne; Braaten, Hans Fredrik Veiteberg; Eek, Espen; Moy, Frithjof E; Lydersen, Espen

2018-01-01

Macrophytes are shown to affect the microbial activity in different aqueous environments, with an altering of the sediment cycling of mercury (Hg) as a potential effect. Here, we investigated how a meadow with permanently submerged macrophytes in a contaminated brackish fjord in southern Norway influenced the conditions for sulfate reducing microbial activity, the methyl-Hg (MeHg) production and the availability of MeHg. Historically discharged Hg from a chlor-alkali plant (60-80tons, 1947-1987) was evident through high Hg concentrations (491mgTot-Hgkg -1 , 268μgMeHgkg -1 ) in intermediate sediment depths (10-20cm) outside of the meadow, with reduced concentrations within the meadow. Natural recovery of the fjord was revealed by lower sediment surface concentrations (1.9-15.5mgTot-Hgkg -1 , 1.3-3.2μgMeHgkg -1 ). Within the meadow, vertical gradients of sediment hydrogen sulfide (H 2 S) E h and pH suggested microbial sulfate reduction in 2-5cm depths, coinciding with peak values of relative MeHg levels (0.5% MeHg). We assume that MeHg production rates was stimulated by the supply and availability of organic carbon, microbial activity and a sulfide oxidizing agent (e.g. O 2 ) within the rhizosphere. Following this, % MeHg in sediment (0-5cm) within the meadow was approximately 10× higher compared to outside the meadow. Further, enhanced availability of MeHg within the meadow was demonstrated by significantly higher fluxes (p<0.01) from sediment to overlying water (0.1-0.6ngm -2 d -1 ) compared to sediment without macrophytes (0.02-0.2ngm -2 d -1 ). Considering the productivity and species richness typical for such habitats, submerged macrophyte meadows located within legacy Hg contaminated sediment sites may constitute important entry points for MeHg into food webs. Copyright © 2017 Elsevier B.V. All rights reserved.

Cattle grazing and its long-term effects on sedge meadows

USGS Publications Warehouse

Middleton, Beth

2004-01-01

Most people think that wetlands are temporary, that they fill in by natural processes, and eventually become dry land. Some of these outdated ideas have come from the way that this subject has been covered in introductory textbooks in schools (Gibson, 1996). From these texts, we learned incorrectly that over time a lake fills with sediment or organic matter to become a wetland, which dries out to support shrubs and trees, and eventually it is no longer a wetland (Middleton, 1999; Middleton and others, 2004). These old ideas of how vegetation changes (succession) are no longer accepted. Wetland succession should be thought of as a cycle, with natural disturbance driving the changes, depending on the needs of the species. Succession is not something that changes a wetland into something that is not a wetland (Egler, 1978; van der Valk, 1981; Middleton and others, 1991; Klinger, 1996; Middleton, 1999).As an example of how disturbance changes wetlands, I have studied sedge meadows that have become invaded by shrubs after cattle (Bos sp.) have grazed them, in the Lodi Marsh State Natural Area, Wisconsin. Cattle disturbances allowed shrubs to invade sedge meadows, but the cattle also grazed on the shrubs, which kept them small. After the cows were removed, the plant species changed in the sedge meadow from the original sedges (fig. 1), to sedges mixed with growing small shrubs, and eventually to tall shrubs with very small amounts of sedge, called “shrub carr” (Middleton, 2002a). Even though there has been a succession of plant types, the meadows, which began as wetlands, have remained wetlands. The settlers originally found the sedge meadows to be open “sedge” lands and not shrubby. The settlers cut the sedges by hand to feed the cattle. Whitetailed deer (Odocoileus virginianus), though probably not bison (Bison bison), grazed these sedge meadows (Middleton 2002a).Subsequent studies have explored methods to control invasive shrubs to restore the biodiversity of formerly grazed sedge meadows (Middleton, 2002b).

Measurement of eye aberrations in a speckle field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Larichev, A V; Ivanov, P V; Iroshnikov, N G

2001-12-31

The influence of speckles on the performance of a Shark-Hartmann wavefront sensor is investigated in the eye aberration studies. The dependence of the phase distortion measurement error on the characteristic speckle size is determined experimentally. Scanning of the reference source was used to suppress the speckle structure of the laser beam scattered by the retina. The technique developed by us made it possible to study the time dependence of the human eye aberrations with a resolution of 30 ms. (laser applications and other topics in quantum electronics)

Denoising in digital speckle pattern interferometry using wave atoms.

PubMed

Federico, Alejandro; Kaufmann, Guillermo H

2007-05-15

We present an effective method for speckle noise removal in digital speckle pattern interferometry, which is based on a wave-atom thresholding technique. Wave atoms are a variant of 2D wavelet packets with a parabolic scaling relation and improve the sparse representation of fringe patterns when compared with traditional expansions. The performance of the denoising method is analyzed by using computer-simulated fringes, and the results are compared with those produced by wavelet and curvelet thresholding techniques. An application of the proposed method to reduce speckle noise in experimental data is also presented.

Investigation of Portevin-Le Chatelier band with temporal phase analysis of speckle interferometry

NASA Astrophysics Data System (ADS)

Jiang, Zhenyu; Zhang, Qingchuan; Wu, Xiaoping

2003-04-01

A new method combining temporal phase analysis with dynamic digital speckle pattern interferometry is proposed to study Portevin-Le Chatelier effect quantitatively. The principle bases on that the phase difference of interference speckle patterns is a time-dependent function related to the object deformation. The interference speckle patterns of specimen are recorded with high sampling rate while PLC effect occurs, and the 2D displacement map of PLC band and its width are obtained by analyzing the displacement of specimen with proposed method.

Kitt Peak speckle camera

NASA Technical Reports Server (NTRS)

Breckinridge, J. B.; Mcalister, H. A.; Robinson, W. G.

1979-01-01

The speckle camera in regular use at Kitt Peak National Observatory since 1974 is described in detail. The design of the atmospheric dispersion compensation prisms, the use of film as a recording medium, the accuracy of double star measurements, and the next generation speckle camera are discussed. Photographs of double star speckle patterns with separations from 1.4 sec of arc to 4.7 sec of arc are shown to illustrate the quality of image formation with this camera, the effects of seeing on the patterns, and to illustrate the isoplanatic patch of the atmosphere.

Lacunarity study of speckle patterns produced by rough surfaces

NASA Astrophysics Data System (ADS)

Dias, M. R. B.; Dornelas, D.; Balthazar, W. F.; Huguenin, J. A. O.; da Silva, L.

2017-11-01

In this work we report on the study of Lacunarity of digital speckle patterns generated by rough surfaces. The study of Lacunarity of speckle patterns was performed on both static and moving rough surfaces. The results show that the Lacunarity is sensitive to the surface roughness, which suggests that it can be used to perform indirect measurement of surface roughness as well as to monitor defects, or variations of roughness, of metallic moving surfaces. Our results show the robustness of this statistical tool applied to speckle pattern in order to study surface roughness.

Assessment of bruising in fruits using dynamic speckle

NASA Astrophysics Data System (ADS)

Pajuelo, Myriam; Baldwin-Olguin, Guillermo; Rabal, Hector J.; Arizaga, Ricardo A.; Trivi, Marcelo

2001-08-01

When a rough surface changes, its optical properties change also and the scattered light shows intensity fluctuations named dynamic speckle. Fruits, even hard peel ones, shows a speckle activity that can be related to maturity, turgor, damage, aging, and mechanical properties. Many techniques have been sued to study these properties, most of them destructive ones. We present an application of dynamical speckle to the study of impact on apples and the analysis of bruises produced by them. The aim is to correlate physical properties of apples with quality factors.

Application of laser scanning speckle-microscopy for high-resolution express diagnostics of chlamydial infection

NASA Astrophysics Data System (ADS)

Ulyanov, Sergey; Larionova, Olga; Ulianova, Onega; Zaitsev, Sergey; Saltykov, Yury; Polyanina, Tatiana; Lyapina, Anna; Filonova, Nadezhda; Subbotina, Irina; Kalduzova, Irina; Utz, Sergey; Moiseeva, Yulia; Feodorova, Valentina

2018-04-01

Method of speckle-microscopy has been adapted to the problem of detection of Chlamydia trachomatis microbial cells in clinical samples. Prototype of laser scanning speckle-microscope has been designed. Spatial resolution and output characteristics of this microscope have been analyzed for the case of scanning of C. trachomatis bacteria inclusions - Elementary Bodies (EBs) inside the human cells, fixed on the glass. It has been demonstrated, that presence of C. trachomatis microbial cells in the sample can be easily detected using speckle microscopy.

Speckle and spectroscopic orbits of the early A-type triple system Eta Virginis

NASA Technical Reports Server (NTRS)

Hartkopf, William I.; Mcalister, Harold A.; Yang, Xinxing; Fekel, Francis C.

1992-01-01

Eta Virginis is a bright (V = 3.89) triple system of composite spectral type A2 IV that has been observed for over a dozen years with both spectroscopy and speckle interferometry. Analysis of the speckle observations results in a long period of 13.1 yr. This period is also detected in residuals from the spectroscopic observations of the 71.7919 day short-period orbit. Elements of the long-period orbit were determined separately using the observations of both techniques. The more accurate elements from the speckle solution have been assumed in a simultaneous spectroscopic determination of the short- and long-period orbital elements. The magnitude difference of the speckle components suggests that lines of the third star should be visible in the spectrum.

Evaluating platelet aggregation dynamics from laser speckle fluctuations.

PubMed

Hajjarian, Zeinab; Tshikudi, Diane M; Nadkarni, Seemantini K

2017-07-01

Platelets are key to maintaining hemostasis and impaired platelet aggregation could lead to hemorrhage or thrombosis. We report a new approach that exploits laser speckle intensity fluctuations, emanated from a drop of platelet-rich-plasma (PRP), to profile aggregation. Speckle fluctuation rate is quantified by the speckle intensity autocorrelation, g 2 (t) , from which the aggregate size is deduced. We first apply this approach to evaluate polystyrene bead aggregation, triggered by salt. Next, we assess dose-dependent platelet aggregation and inhibition in human PRP spiked with adenosine diphosphate and clopidogrel. Additional spatio-temporal speckle analyses yield 2-dimensional maps of particle displacements to visualize platelet aggregate foci within minutes and quantify aggregation dynamics. These findings demonstrate the unique opportunity for assessing platelet health within minutes for diagnosing bleeding disorders and monitoring anti-platelet therapies.

Speckle contrast optical spectroscopy, a non-invasive, diffuse optical method for measuring microvascular blood flow in tissue

PubMed Central

Valdes, Claudia P.; Varma, Hari M.; Kristoffersen, Anna K.; Dragojevic, Tanja; Culver, Joseph P.; Durduran, Turgut

2014-01-01

We introduce a new, non-invasive, diffuse optical technique, speckle contrast optical spectroscopy (SCOS), for probing deep tissue blood flow using the statistical properties of laser speckle contrast and the photon diffusion model for a point source. The feasibility of the method is tested using liquid phantoms which demonstrate that SCOS is capable of measuring the dynamic properties of turbid media non-invasively. We further present an in vivo measurement in a human forearm muscle using SCOS in two modalities: one with the dependence of the speckle contrast on the source-detector separation and another on the exposure time. In doing so, we also introduce crucial corrections to the speckle contrast that account for the variance of the shot and sensor dark noises. PMID:25136500

Laser speckle imaging based on photothermally driven convection.

PubMed

Regan, Caitlin; Choi, Bernard

2016-02-01

Laser speckle imaging (LSI) is an interferometric technique that provides information about the relative speed of moving scatterers in a sample. Photothermal LSI overcomes limitations in depth resolution faced by conventional LSI by incorporating an excitation pulse to target absorption by hemoglobin within the vascular network. Here we present results from experiments designed to determine the mechanism by which photothermal LSI decreases speckle contrast. We measured the impact of mechanical properties on speckle contrast, as well as the spatiotemporal temperature dynamics and bulk convective motion occurring during photothermal LSI. Our collective data strongly support the hypothesis that photothermal LSI achieves a transient reduction in speckle contrast due to bulk motion associated with thermally driven convection. The ability of photothermal LSI to image structures below a scattering medium may have important preclinical and clinical applications.

Cellular organization of pre-mRNA splicing factors in several tissues. Changes in the uterus by hormone action.

PubMed

George-Téllez, R; Segura-Valdez, M L; González-Santos, L; Jiménez-García, L F

2002-05-01

In the mammalian cell nucleus, splicing factors are distributed in nuclear domains known as speckles or splicing factor compartments (SFCs). In cultured cells, these domains are dynamic and reflect transcriptional and splicing activities. We used immunofluorescence and confocal microscopy to monitor whether splicing factors in differentiated cells display similar features. Speckled patterns are observed in rat hepatocytes, beta-cells, bronchial and intestine epithelia and also in three cell types of the uterus. Moreover, the number, distribution and sizes of the speckles vary among them. In addition, we studied variations in the circular form (shape) of speckles in uterine cells that are transcriptionally modified by a hormone action. During proestrus of the estral cycle, speckles are irregular in shape while in diestrus I they are circular. Experimentally, in castrated rats luminal epithelial cells show a pattern where speckles are dramatically rounded, but they recover their irregular shape rapidly after an injection of estradiol. The same results were observed in muscle and gland epithelial cells of the uterus. We concluded that different speckled patterns are present in various cells types in differentiated tissues and that these patterns change in the uterus depending upon the presence or absence of hormones such as estradiol.

The SKED: speckle knife edge detector

NASA Astrophysics Data System (ADS)

Sharpies, S. D.; Light, R. A.; Achamfuo-Yeboah, S. O.; Clark, M.; Somekh, M. G.

2014-06-01

The knife edge detector—also known as optical beam deflection—is a simple and robust method of detecting ultrasonic waves using a laser. It is particularly suitable for detection of high frequency surface acoustic waves as the response is proportional to variation of the local tilt of the surface. In the case of a specular reflection of the incident laser beam from a smooth surface, any lateral movement of the reflected beam caused by the ultrasonic waves is easily detected by a pair of photodiodes. The major disadvantage of the knife edge detector is that it does not cope well with optically rough surfaces, those that give a speckled reflection. The optical speckles from a rough surface adversely affect the efficiency of the knife edge detector, because 'dark' speckles move synchronously with 'bright' speckles, and their contributions to the ultrasonic signal cancel each other out. We have developed a new self-adapting sensor which can cope with the optical speckles reflected from a rough surface. It is inelegantly called the SKED—speckle knife edge detector—and like its smooth surface namesake it is simple, cheap, compact, and robust. We describe the theory of its operation, and present preliminary experimental results validating the overall concept and the operation of the prototype device.

Restoration of dry, montane meadows through prescribed fire, vegetation and fuels management: a program of research and adaptive management in western Oregon

Treesearch

Frederick J. Swanson; Charles B. Halpern; John H. Cissel

2007-01-01

Mountain meadows in the Pacific Northwest, as in much of western North America, have experienced recent and rapid invasion by conifers. Changes in climate, cessation of sheep grazing, and long-term suppression of wildfire likely contribute to the observed replacement of meadow by forest. Faced by gradual loss of these habitats, land managers in the western Cascades of...

In vivo lateral blood flow velocity measurement using speckle size estimation.

PubMed

Xu, Tiantian; Hozan, Mohsen; Bashford, Gregory R

2014-05-01

In previous studies, we proposed blood measurement using speckle size estimation, which estimates the lateral component of blood flow within a single image frame based on the observation that the speckle pattern corresponding to blood reflectors (typically red blood cells) stretches (i.e., is "smeared") if blood flow is in the same direction as the electronically controlled transducer line selection in a 2-D image. In this observational study, the clinical viability of ultrasound blood flow velocity measurement using speckle size estimation was investigated and compared with that of conventional spectral Doppler of carotid artery blood flow data collected from human patients in vivo. Ten patients (six male, four female) were recruited. Right carotid artery blood flow data were collected in an interleaved fashion (alternating Doppler and B-mode A-lines) with an Antares Ultrasound Imaging System and transferred to a PC via the Axius Ultrasound Research Interface. The scanning velocity was 77 cm/s, and a 4-s interval of flow data were collected from each subject to cover three to five complete cardiac cycles. Conventional spectral Doppler data were collected simultaneously to compare with estimates made by speckle size estimation. The results indicate that the peak systolic velocities measured with the two methods are comparable (within ±10%) if the scan velocity is greater than or equal to the flow velocity. When scan velocity is slower than peak systolic velocity, the speckle stretch method asymptotes to the scan velocity. Thus, the speckle stretch method is able to accurately measure pure lateral flow, which conventional Doppler cannot do. In addition, an initial comparison of the speckle size estimation and color Doppler methods with respect to computational complexity and data acquisition time indicated potential time savings in blood flow velocity estimation using speckle size estimation. Further studies are needed for calculation of the speckle stretch method across a field of view and combination with an appropriate axial flow estimator. Copyright © 2014 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Multi-wavelength speckle reduction for laser pico-projectors using diffractive optics

NASA Astrophysics Data System (ADS)

Thomas, Weston H.

Personal electronic devices, such as cell phones and tablets, continue to decrease in size while the number of features and add-ons keep increasing. One particular feature of great interest is an integrated projector system. Laser pico-projectors have been considered, but the technology has not been developed enough to warrant integration. With new advancements in diode technology and MEMS devices, laser-based projection is currently being advanced for pico-projectors. A primary problem encountered when using a pico-projector is coherent interference known as speckle. Laser speckle can lead to eye irritation and headaches after prolonged viewing. Diffractive optical elements known as diffusers have been examined as a means to lower speckle contrast. Diffusers are often rotated to achieve temporal averaging of the spatial phase pattern provided by diffuser surface. While diffusers are unable to completely eliminate speckle, they can be utilized to decrease the resultant contrast to provide a more visually acceptable image. This dissertation measures the reduction in speckle contrast achievable through the use of diffractive diffusers. A theoretical Fourier optics model is used to provide the diffuser's stationary and in-motion performance in terms of the resultant contrast level. Contrast measurements of two diffractive diffusers are calculated theoretically and compared with experimental results. In addition, a novel binary diffuser design based on Hadamard matrices will be presented. Using two static in-line Hadamard diffusers eliminates the need for rotation or vibration of the diffuser for temporal averaging. Two Hadamard diffusers were fabricated and contrast values were subsequently measured, showing good agreement with theory and simulated values. Monochromatic speckle contrast values of 0.40 were achieved using the Hadamard diffusers. Finally, color laser projection devices require the use of red, green, and blue laser sources; therefore, using a monochromatic diffractive diffuser may not optimal for color speckle contrast reduction. A simulation of the Hadamard diffusers is conducted to determine the optimum spacing between the two diffusers for polychromatic speckle reduction. Experimental measured results are presented using the optimal spacing of Hadamard diffusers for RGB color speckle reduction, showing 60% reduction in contrast.

Comparison of Filters Dedicated to Speckle Suppression in SAR Images

NASA Astrophysics Data System (ADS)

Kupidura, P.

2016-06-01

This paper presents the results of research on the effectiveness of different filtering methods dedicated to speckle suppression in SAR images. The tests were performed on RadarSat-2 images and on an artificial image treated with simulated speckle noise. The research analysed the performance of particular filters related to the effectiveness of speckle suppression and to the ability to preserve image details and edges. Speckle is a phenomenon inherent to radar images - a deterministic noise connected with land cover type, but also causing significant changes in digital numbers of pixels. As a result, it may affect interpretation, classification and other processes concerning radar images. Speckle, resembling "salt and pepper" noise, has the form of a set of relatively small groups of pixels of values markedly different from values of other pixels representing the same type of land cover. Suppression of this noise may also cause suppression of small image details, therefore the ability to preserve the important parts of an image, was analysed as well. In the present study, selected filters were tested, and methods dedicated particularly to speckle noise suppression: Frost, Gamma-MAP, Lee, Lee-Sigma, Local Region, general filtering methods which might be effective in this respect: Mean, Median, in addition to morphological filters (alternate sequential filters with multiple structuring element and by reconstruction). The analysis presented in this paper compared the effectiveness of different filtering methods. It proved that some of the dedicated radar filters are efficient tools for speckle suppression, but also demonstrated a significant efficiency of the morphological approach, especially its ability to preserve image details.

Video surveillance with speckle imaging

DOEpatents

Carrano, Carmen J [Livermore, CA; Brase, James M [Pleasanton, CA

2007-07-17

A surveillance system looks through the atmosphere along a horizontal or slant path. Turbulence along the path causes blurring. The blurring is corrected by speckle processing short exposure images recorded with a camera. The exposures are short enough to effectively freeze the atmospheric turbulence. Speckle processing is used to recover a better quality image of the scene.

Photon statistics and speckle visibility spectroscopy with partially coherent X-rays.

PubMed

Li, Luxi; Kwaśniewski, Paweł; Orsi, Davide; Wiegart, Lutz; Cristofolini, Luigi; Caronna, Chiara; Fluerasu, Andrei

2014-11-01

A new approach is proposed for measuring structural dynamics in materials from multi-speckle scattering patterns obtained with partially coherent X-rays. Coherent X-ray scattering is already widely used at high-brightness synchrotron lightsources to measure dynamics using X-ray photon correlation spectroscopy, but in many situations this experimental approach based on recording long series of images (i.e. movies) is either not adequate or not practical. Following the development of visible-light speckle visibility spectroscopy, the dynamic information is obtained instead by analyzing the photon statistics and calculating the speckle contrast in single scattering patterns. This quantity, also referred to as the speckle visibility, is determined by the properties of the partially coherent beam and other experimental parameters, as well as the internal motions in the sample (dynamics). As a case study, Brownian dynamics in a low-density colloidal suspension is measured and an excellent agreement is found between correlation functions measured by X-ray photon correlation spectroscopy and the decay in speckle visibility with integration time obtained from the analysis presented here.

A Simulation Analysis of an Extension of One-Dimensional Speckle Correlation Method for Detection of General In-Plane Translation

PubMed Central

Hrabovský, Miroslav

2014-01-01

The purpose of the study is to show a proposal of an extension of a one-dimensional speckle correlation method, which is primarily intended for determination of one-dimensional object's translation, for detection of general in-plane object's translation. In that view, a numerical simulation of a displacement of the speckle field as a consequence of general in-plane object's translation is presented. The translation components a x and a y representing the projections of a vector a of the object's displacement onto both x- and y-axes in the object plane (x, y) are evaluated separately by means of the extended one-dimensional speckle correlation method. Moreover, one can perform a distinct optimization of the method by reduction of intensity values representing detected speckle patterns. The theoretical relations between the translation components a x and a y of the object and the displacement of the speckle pattern for selected geometrical arrangement are mentioned and used for the testifying of the proposed method's rightness. PMID:24592180

Tracking moving targets behind a scattering medium via speckle correlation.

PubMed

Guo, Chengfei; Liu, Jietao; Wu, Tengfei; Zhu, Lei; Shao, Xiaopeng

2018-02-01

Tracking moving targets behind a scattering medium is a challenge, and it has many important applications in various fields. Owing to the multiple scattering, instead of the object image, only a random speckle pattern can be received on the camera when light is passing through highly scattering layers. Significantly, an important feature of a speckle pattern has been found, and it showed the target information can be derived from the speckle correlation. In this work, inspired by the notions used in computer vision and deformation detection, by specific simulations and experiments, we demonstrate a simple object tracking method, in which by using the speckle correlation, the movement of a hidden object can be tracked in the lateral direction and axial direction. In addition, the rotation state of the moving target can also be recognized by utilizing the autocorrelation of a speckle. This work will be beneficial for biomedical applications in the fields of quantitative analysis of the working mechanisms of a micro-object and the acquisition of dynamical information of the micro-object motion.

Analysis of strawberry ripening by dynamic speckle measurements

NASA Astrophysics Data System (ADS)

Mulone, C.; Budini, N.; Vincitorio, F. M.; Freyre, C.; López Díaz, A. J.; Ramil Rego, A.

2013-11-01

This work seeks to determine the age of a fruit from observation of its dynamic speckle pattern. A mobile speckle pattern originates on the fruit's surface due to the interference of the wavefronts reflected from moving scatterers. For this work we analyzed two series of photographs of a strawberry speckle pattern, at different stages of ripening, acquired with a CMOS camera. The first day, we took ten photographs at an interval of one second. The same procedure was repeated the next day. From each series of images we extracted several statistical descriptors of pixel-to-pixel gray level variation during the observation time. By comparing these values from the first to the second day we noticed a diminution of the speckle activity. This decay demonstrated that after only one day the ripening process of the strawberry can be detected by dynamic speckle pattern analysis. For this study we employed a simple new algorithm to process the data obtained from the photographs. This algorithm allows defining a global mobility index that indicates the evolution of the fruit's ripening.

Groundwater-surface water interactions in a glacierized catchment and their influence on proglacial water supply

NASA Astrophysics Data System (ADS)

Gordon, R. P.; Lautz, L. K.; McKenzie, J. M.; Mark, B. G.

2012-12-01

The tropical glaciers of the Cordillera Blanca of Peru are retreating rapidly due to climate change, which threatens water resources for the quarter-million inhabitants of the upper Rio Santa river valley and many more downstream. Recent studies have shown that glacial melt supplies approximately half of dry season stream discharge in Cordillera Blanca valleys. The remainder of streamflow is supplied by groundwater stored in alpine meadows, moraines and talus slopes. In the future, when glacier loss has reduced the influence of melt water on streams, groundwater discharge will be the primary dry-season source of stream water for irrigation, municipalities, and hydropower in the Santa watershed. A better understanding of the dynamics of alpine groundwater, including sources and exchange fluxes, is therefore important for future planning in this region. Understanding these groundwater-surface water interactions is necessary for making accurate estimates of meltwater contributions to the hydrologic budget, and for our ability to make predictions about future water resources under deglaciating conditions. We combined measurements of groundwater-surface water exchange during the dry season with synoptic sampling of stream water and end-members in order to quantify the groundwater contributions to streamflow from an alpine meadow, debris fan, and moraine complex in a glacierized valley of the Cordillera Blanca. Using stream tracer-dilution techniques, we calculated channel water balances for 9 stream reaches of 100-200 m throughout the meadow and measured the discharge of glacial meltwater into debris fan and moraine units. We used vertical heat tracing to measure stream-groundwater exchange at 2-hour increments over 2 weeks in 13 stream locations in the meadow, debris fan, and moraine units. Channel water balance and heat tracing results show that, during the studied portion of the dry season, the stream loses water (2.5 l/s or ~25% of flow) to the subsurface in the upstream half of the meadow, and gains water (7 l/s or ~6% of flow) in the lower half. The debris fan adjacent to the meadow received 22 l/s of surficial melt water from a glacial lake but contributed ~100 l/s of streamflow to the meadow, mostly through springs at the fan-meadow interface. In contrast, the terminal moraine complex at the head of the meadow received 36 l/s of glacial lake discharge but only contributed 5 l/s of streamflow to the meadow; the remainder of stream discharge over the moraine was apparently lost to an underlying aquifer. Results show that gains and losses of stream water are unequally distributed across the landscape in the dry season, with the debris fan and meadow being net sources of streamflow, and the moraine a net sink. Almost all of the stream water exiting the catchment (115 l/s) spent some time in the subsurface, with approximately half originating as groundwater within the studied watershed.

Hydroclimatic alteration increases vulnerability of montane meadows in the Sierra Nevada, California

NASA Astrophysics Data System (ADS)

Viers, J. H.; Peek, R.; Purdy, S. E.; Emmons, J. D.; Yarnell, S. M.

2012-12-01

Meadow ecosystems of the Sierra Nevada (California, USA) have been maintained by the interplay of biotic and abiotic forces, where hydrological functions bridge aquatic and terrestrial realms. Meadows are not only key habitat for fishes, amphibians, birds, and mammals alike, but also provide enumerable ecosystem services to humans, not limited to regulating services (eg, water filtration), provisioning services (eg, grazing), and aesthetics. Using hydroclimatic models and spatial distribution models of indicator species, a range wide assessment was conducted to assess and synthesize the vulnerability of meadow ecosystems to hydroclimatic alteration, a result of regional climate change. Atmospheric warming is expected to result in a greater fraction of total precipitation falling as winter rain (rather than snow) and earlier snowmelt. These predicted changes will likely cause more precipitation-driven runoff in winter and reduced snowmelt runoff in spring, leading to reduced annual runoff and a general shift in runoff timing to earlier in the year. These profound effects have consequences for hydrological cycling and meadow functioning, though such changes will not occur steadily through time or uniformly across the range, and each individual meadow will respond as a function of its composition and land use history. Most vulnerable is groundwater recharge, a fundamental component of meadow hydrology. As a result of shortened snow melt period and absence of diel snowmelt fluxes that would otherwise gradually refill meadow aquifers, recharge is expected to decline due to less infiltration. Diminished water tables will likely stress hydric and mesic vegetation, promoting more xeric conditions. Coupled with greater magnitude stream flows, these conditions promote channel incision and ultimate state shift to non-meadow conditions. The biological effects of hydroclimatic alteration, such as lower mean annual flow and earlier timing, will result in an overall decrease in available habitat for aquatic species, particularly for cold water fishes (ie, salmonids and sculpins). Earlier timing and longer low flow duration will force aquatic biota to withstand more days at thermally challenging temperatures, potentially promoting non-native species. Decreased mean annual flow, less overall snow volume, and warmer daily air temperatures will potentially decrease the number of days of standing water available for amphibian reproduction. A core strategy for maintaining meadow ecosystems, ecosystem services, and dependent biodiversity is to reduce vulnerabilities, such as unstable stream banks that promote cycles of incision, and increase resilience to disturbance, such as actively removing encroaching vegetation that can overtap water tables and build up wildfire fuels. Reducing meadow vulnerability to hydroclimatic alteration and ensuring sustained ecosystem services will require active ecosystem management (ie, managed for indicator species, but with focus on hydrological functioning); coordinated hydrological management (ie, conservation action and removal of stressors coordinated across all ownerships and management regimes); and effective communication to minimize human activities that reduce resilience, as well as improve human

Laser speckle imaging based on photothermally driven convection

PubMed Central

Regan, Caitlin; Choi, Bernard

2016-01-01

Abstract. Laser speckle imaging (LSI) is an interferometric technique that provides information about the relative speed of moving scatterers in a sample. Photothermal LSI overcomes limitations in depth resolution faced by conventional LSI by incorporating an excitation pulse to target absorption by hemoglobin within the vascular network. Here we present results from experiments designed to determine the mechanism by which photothermal LSI decreases speckle contrast. We measured the impact of mechanical properties on speckle contrast, as well as the spatiotemporal temperature dynamics and bulk convective motion occurring during photothermal LSI. Our collective data strongly support the hypothesis that photothermal LSI achieves a transient reduction in speckle contrast due to bulk motion associated with thermally driven convection. The ability of photothermal LSI to image structures below a scattering medium may have important preclinical and clinical applications. PMID:26927221

Evaluating platelet aggregation dynamics from laser speckle fluctuations

PubMed Central

Hajjarian, Zeinab; Tshikudi, Diane M.; Nadkarni, Seemantini K.

2017-01-01

Platelets are key to maintaining hemostasis and impaired platelet aggregation could lead to hemorrhage or thrombosis. We report a new approach that exploits laser speckle intensity fluctuations, emanated from a drop of platelet-rich-plasma (PRP), to profile aggregation. Speckle fluctuation rate is quantified by the speckle intensity autocorrelation, g2(t), from which the aggregate size is deduced. We first apply this approach to evaluate polystyrene bead aggregation, triggered by salt. Next, we assess dose-dependent platelet aggregation and inhibition in human PRP spiked with adenosine diphosphate and clopidogrel. Additional spatio-temporal speckle analyses yield 2-dimensional maps of particle displacements to visualize platelet aggregate foci within minutes and quantify aggregation dynamics. These findings demonstrate the unique opportunity for assessing platelet health within minutes for diagnosing bleeding disorders and monitoring anti-platelet therapies. PMID:28717586

Physical and biogeochemical controls on polymictic behavior in Sierra Nevada stream pools

NASA Astrophysics Data System (ADS)

Lucas, R. G.; Conklin, M. H.; Tyler, S. W.; Suarez, F. I.; Moran, J. E.; Esser, B. K.

2011-12-01

We observed polymictic behavior in stream pools in a low gradient montane meadow in the southern Sierra Nevada mountains, California. Thermal stratification in stream pools has been observed in various environments; stratification generally persists where the buoyancy forces created by a variation in water density, as a function of water temperature, are able to overcome turbulent forces resulting from stream flow. Because the density gradient creates a relatively weak buoyancy force, low flow conditions are generally required in order to overcome the turbulent forces. In some studies, a cold water source in to the pool bottoms can help to increase the density gradient and perpetuate thermal stratification. Our study took place in Long Meadow, Sequoia National Park, California. Long Meadow lies in the Wolverton Creek watershed and is part of the Southern Sierra Critical Zone Observatory. The 1-4 m diameter and 1-2 m deep pools in our study stratified thermally during the day and mixed completely at night. The low gradient of the meadow provided low stream flows. Piezometers in the meadow indicated groundwater discharge into the meadow in the months during which stratification was observed. Radon 222 activity measured in the pools also indicated groundwater influx to the pool bottoms. We used Fluent, a computational fluid dynamics equation solver, to construct a model of one of the observed pools. Initially we attempted to model the physical mechanisms controlling thermal stratification in the pool including stream flow, groundwater discharge, solar radiation, wind speed, and air, stream and ground water temperatures. Ultimately we found the model best agreed with our observed pool temperatures when we considered the light attenuation coefficients as a function of the dissolve organic carbon (DOC) concentration. Elevated DOC concentrations are expected in low stream flow regimes associated with highly organic soils such as a montane meadow. DOC concentrations measured in samples collected from the meadow stream, pools, and ground water wells ranged from 3.09 to 5.25 mg/L. We used a power equation taken from the literature to vary the visible light attenuation with DOC values measured in the meadow system. Light attenuation coefficients determined from measured DOC concentrations ranged from 0.507 m-1 to 0.899 m-1. The results from our modeling efforts indicate that in low flow streams and rivers elevated concentrations of DOC can increase the potential for thermal stratification in stream pools.

Quantification and Reconstruction in Photoacoustic Tomography

NASA Astrophysics Data System (ADS)

Guo, Zijian

Optical absorption is closely associated with many physiological important parameters, such as the concentration and oxygen saturation of hemoglobin. Conventionally, accurate quantification in PAT requires knowledge of the optical fluence attenuation, acoustic pressure attenuation, and detection bandwidth. We circumvent this requirement by quantifying the optical absorption coefficients from the acoustic spectra of PA signals acquired at multiple optical wavelengths. We demonstrate the method using the optical-resolution photoacoustic microscopy (OR-PAM) and the acoustical-resolution photoacoustic microscopy (AR-PAM) in the optical ballistic regime and in the optical diffusive regime, respectively. The data acquisition speed in photoacoustic computed tomography (PACT) is limited by the laser repetition rate and the number of parallel ultrasound detecting channels. Reconstructing an image with fewer measurements can effectively accelerate the data acquisition and reduce the system cost. We adapted Compressed Sensing (CS) for the reconstruction in PACT. CS-based PACT was implemented as a non-linear conjugate gradient descent algorithm and tested with both phantom and in vivo experiments. Speckles have been considered ubiquitous in all scattering-based coherent imaging technologies. As a coherent imaging modality based on optical absorption, photoacoustic (PA) tomography (PAT) is generally devoid of speckles. PAT suppresses speckles by building up prominent boundary signals, via a mechanism similar to that of specular reflection. When imaging smooth boundary absorbing targets, the speckle visibility in PAT, which is defined as the ratio of the square root of the average power of speckles to that of boundaries, is inversely proportional to the square root of the absorber density. If the surfaces of the absorbing targets have uncorrelated height fluctuations, however, the boundary features may become fully developed speckles. The findings were validated by simulations and experiments. The first- and second-order statistics of PAT speckles were also studied experimentally. While the amplitude of the speckles follows a Gaussian distribution, the autocorrelation of the speckle patterns tracks that of the system point spread function.

A New Feature-Enhanced Speckle Reduction Method Based on Multiscale Analysis for Ultrasound B-Mode Imaging.

PubMed

Kang, Jinbum; Lee, Jae Young; Yoo, Yangmo

2016-06-01

Effective speckle reduction in ultrasound B-mode imaging is important for enhancing the image quality and improving the accuracy in image analysis and interpretation. In this paper, a new feature-enhanced speckle reduction (FESR) method based on multiscale analysis and feature enhancement filtering is proposed for ultrasound B-mode imaging. In FESR, clinical features (e.g., boundaries and borders of lesions) are selectively emphasized by edge, coherence, and contrast enhancement filtering from fine to coarse scales while simultaneously suppressing speckle development via robust diffusion filtering. In the simulation study, the proposed FESR method showed statistically significant improvements in edge preservation, mean structure similarity, speckle signal-to-noise ratio, and contrast-to-noise ratio (CNR) compared with other speckle reduction methods, e.g., oriented speckle reducing anisotropic diffusion (OSRAD), nonlinear multiscale wavelet diffusion (NMWD), the Laplacian pyramid-based nonlinear diffusion and shock filter (LPNDSF), and the Bayesian nonlocal means filter (OBNLM). Similarly, the FESR method outperformed the OSRAD, NMWD, LPNDSF, and OBNLM methods in terms of CNR, i.e., 10.70 ± 0.06 versus 9.00 ± 0.06, 9.78 ± 0.06, 8.67 ± 0.04, and 9.22 ± 0.06 in the phantom study, respectively. Reconstructed B-mode images that were developed using the five speckle reduction methods were reviewed by three radiologists for evaluation based on each radiologist's diagnostic preferences. All three radiologists showed a significant preference for the abdominal liver images obtained using the FESR methods in terms of conspicuity, margin sharpness, artificiality, and contrast, p<0.0001. For the kidney and thyroid images, the FESR method showed similar improvement over other methods. However, the FESR method did not show statistically significant improvement compared with the OBNLM method in margin sharpness for the kidney and thyroid images. These results demonstrate that the proposed FESR method can improve the image quality of ultrasound B-mode imaging by enhancing the visualization of lesion features while effectively suppressing speckle noise.

Using digital photography to examine grazing in montane meadows

USGS Publications Warehouse

McIlroy, Susan K.; Allen-Diaz, Barbara H.; Berg, Alexander C.

2011-01-01

Cattle (Bos taurus) numbers on national forests are allocated based on allotment grazing capacity, but spatial patterns of timing and density at smaller scales are difficult to assess. However, it is often in meadows or riparian areas that grazing may affect hydrology, biodiversity, and other important ecosystem characteristics. To explore real-time animal presence in montane meadows we distributed 18 digital cameras across nine sites in the Sierra National Forest, California. Our objectives were to document seasonal and diurnal presence of both cattle and mule deer (Odocoileus hemionus), identify the effects of three fencing treatments on animal distribution, and test digital photography as a tool for documenting cattle presence. We recorded 409 399 images during daylight hours for two grazing seasons, and we identified 5 084 and 24 482 cattle "marks" (instances of animal occurrence) in 2006 and 2007, respectively. Deer presence was much lower, with 331 marks in 2006 and 598 in 2007. Morning cattle presence was highest before 0800 hours both years (13.7% and 15.4% of total marks for 2006 and 2007, respectively). Marks decreased until 1100 hours and then increased around 1400 hours and remained relatively stable until 1900 hours. Marks then rose precipitously, with >20% of total marks recorded after 1900 hours both years. Deer presence was less than 10% per hour until 1800 hours, when >20% of total marks were recorded after this time both years. Among treatments, cattle marks were highest outside fences at partially fenced meadows, and deer were highest within completely fenced meadows. Our experience suggests that cameras are not viable tools for meadow monitoring due to variation captured within meadows and the time and effort involved in image processing and review.

Predicting the cumulative effect of multiple disturbances on seagrass connectivity.

PubMed

Grech, Alana; Hanert, Emmanuel; McKenzie, Len; Rasheed, Michael; Thomas, Christopher; Tol, Samantha; Wang, Mingzhu; Waycott, Michelle; Wolter, Jolan; Coles, Rob

2018-03-15

The rate of exchange, or connectivity, among populations effects their ability to recover after disturbance events. However, there is limited information on the extent to which populations are connected or how multiple disturbances affect connectivity, especially in coastal and marine ecosystems. We used network analysis and the outputs of a biophysical model to measure potential functional connectivity and predict the impact of multiple disturbances on seagrasses in the central Great Barrier Reef World Heritage Area (GBRWHA), Australia. The seagrass networks were densely connected, indicating that seagrasses are resilient to the random loss of meadows. Our analysis identified discrete meadows that are important sources of seagrass propagules and that serve as stepping stones connecting various different parts of the network. Several of these meadows were close to urban areas or ports and likely to be at risk from coastal development. Deep water meadows were highly connected to coastal meadows and may function as a refuge, but only for non-foundation species. We evaluated changes to the structure and functioning of the seagrass networks when one or more discrete meadows were removed due to multiple disturbance events. The scale of disturbance required to disconnect the seagrass networks into two or more components was on average >245 km, about half the length of the metapopulation. The densely connected seagrass meadows of the central GBRWHA are not limited by the supply of propagules; therefore, management should focus on improving environmental conditions that support natural seagrass recruitment and recovery processes. Our study provides a new framework for assessing the impact of global change on the connectivity and persistence of coastal and marine ecosystems. Without this knowledge, management actions, including coastal restoration, may prove unnecessary and be unsuccessful. © 2018 John Wiley & Sons Ltd.

Plant Functional Diversity and Species Diversity in the Mongolian Steppe

PubMed Central

Liu, Guofang; Xie, Xiufang; Ye, Duo; Ye, Xuehua; Tuvshintogtokh, Indree; Mandakh, Bayart; Huang, Zhenying; Dong, Ming

2013-01-01

Background The Mongolian steppe is one of the most important grasslands in the world but suffers from aridization and damage from anthropogenic activities. Understanding structure and function of this community is important for the ecological conservation, but has seldom been investigated. Methodology/Principal Findings In this study, a total of 324 quadrats located on the three main types of Mongolian steppes were surveyed. Early-season perennial forbs (37% of total importance value), late-season annual forbs (33%) and late-season perennial forbs (44%) were dominant in meadow, typical and desert steppes, respectively. Species richness, diversity and plant functional type (PFT) richness decreased from the meadow, via typical to desert steppes, but evenness increased; PFT diversity in the desert and meadow steppes was higher than that in typical steppe. However, above-ground net primary productivity (ANPP) was far lower in desert steppe than in the other two steppes. In addition, the slope of the relationship between species richness and PFT richness increased from the meadow, via typical to desert steppes. Similarly, with an increase in species diversity, PFT diversity increased more quickly in both the desert and typical steppes than that in meadow steppe. Random resampling suggested that this coordination was partly due to a sampling effect of diversity. Conclusions/Significance These results indicate that desert steppe should be strictly protected because of its limited functional redundancy, which its ecological functioning is sensitive to species loss. In contrast, despite high potential forage production shared by the meadow and typical steppes, management of these two types of steppes should be different: meadow steppe should be preserved due to its higher conservation value characterized by more species redundancy and higher spatial heterogeneity, while typical steppe could be utilized moderately because its dominant grass genus Stipa is resistant to herbivory and drought. PMID:24116233

Edge Effects along a Seagrass Margin Result in an Increased Grazing Risk on Posidonia australis Transplants.

PubMed

Statton, John; Gustin-Craig, Samuel; Dixon, Kingsley W; Kendrick, Gary A

2015-01-01

A key issue in habitat restoration are the changes in ecological processes that occur when fragments of habitat are lost, resulting in the persistence of habitat-degraded margins. Margins often create or enhance opportunities for negative plant-herbivore interactions, preventing natural or assisted re-establishment of native vegetation into the degraded area. However, at some distance from the habitat margin these negative interactions may relax. Here, we posit that the intensity of species interactions in a fragmented Posidonia australis seagrass meadow may be spatially dependent on proximity to the seagrass habitat edge, whereby the risk of grazing is high and the probability of survival of seagrass transplants is low. To test this, transplants were planted 2 m within the meadow, on the meadow edge at 0m, and at 2m, 10m, 30m, 50m and 100m distance from the edge of the seagrass meadow into the unvegetated sand sheet. There was an enhanced grazing risk 0-10m from the edge, but decreased sharply with increasing distances (>30m). Yet, the risk of grazing was minimal inside the seagrass meadow, indicating that grazers may use the seagrass meadow for refuge but are not actively grazing within it. The relationship between short-term herbivory risk and long-term survival was not straightforward, suggesting that other environmental filters are also affecting survival of P. australis transplants within the study area. We found that daily probability of herbivory was predictable and operating over a small spatial scale at the edge of a large, intact seagrass meadow. These findings highlight the risk from herbivory can be high, and a potential contributing factor to seagrass establishment in restoration programs.

Edge Effects along a Seagrass Margin Result in an Increased Grazing Risk on Posidonia australis Transplants

PubMed Central

Statton, John; Gustin-Craig, Samuel; Dixon, Kingsley W.; Kendrick, Gary A.

2015-01-01

A key issue in habitat restoration are the changes in ecological processes that occur when fragments of habitat are lost, resulting in the persistence of habitat-degraded margins. Margins often create or enhance opportunities for negative plant-herbivore interactions, preventing natural or assisted re-establishment of native vegetation into the degraded area. However, at some distance from the habitat margin these negative interactions may relax. Here, we posit that the intensity of species interactions in a fragmented Posidonia australis seagrass meadow may be spatially dependent on proximity to the seagrass habitat edge, whereby the risk of grazing is high and the probability of survival of seagrass transplants is low. To test this, transplants were planted 2 m within the meadow, on the meadow edge at 0m, and at 2m, 10m, 30m, 50m and 100m distance from the edge of the seagrass meadow into the unvegetated sand sheet. There was an enhanced grazing risk 0-10m from the edge, but decreased sharply with increasing distances (>30m). Yet, the risk of grazing was minimal inside the seagrass meadow, indicating that grazers may use the seagrass meadow for refuge but are not actively grazing within it. The relationship between short-term herbivory risk and long-term survival was not straightforward, suggesting that other environmental filters are also affecting survival of P. australis transplants within the study area. We found that daily probability of herbivory was predictable and operating over a small spatial scale at the edge of a large, intact seagrass meadow. These findings highlight the risk from herbivory can be high, and a potential contributing factor to seagrass establishment in restoration programs. PMID:26465926

Mohawk Lake or Mohawk meadow Sedimentary facies and stratigraphy of Quaternary deposits in Mohawk Valley, upper Middle Fork of the Feather River, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yount, J.C.; Harwood, D.S.; Bradbury, J.P.

1993-04-01

Mohawk Valley (MV) contain thick, well-exposed sections of Quaternary basin-fill sediments, with abundant interbedded tephra and a diverse assemblage of sedimentary facies. The eastern arm of MV, extending from Clio to Portola, contains as much as 100 m of trough cross-bedded cobble to pebble gravel and planar and trough cross-bedded coarse and medium sand, interpreted as braided stream deposits. Sections exposed in the western arm of MV consist in their lower parts of massive organic-rich silt and clay interbedded with blocky to fissile peat beds up to 1 m thick. Diatom assemblages are dominated by benthic species indicating fresh marshmore » environments with very shallow water depths of one meter or less. Proglacial lacustrine deposits of limited lateral extent are present within the outwash complexes as evidenced by varved fine sand and silt couplets, poorly sorted quartz-rich silt beds containing dropstones, and contorted beds of diamict grading laterally into slump blocks surrounded by wood-bearing silt and silty sand. The Rockland Ash (400 ka) is a prominent marker in the middle or lower part of many sections throughout MV, indicating that at least half of the basin-fill sequence is Late Quaternary in age. A log buried in diamict slumped into a proglacial lake lying approximately 3 km downstream from the Tioga Stage ice termini in Jamison and Gray Eagle Creeks yields an age of 18,715 [+-]235 C[sup 14] years BP. Previous interpretations of MV deposits originating in a large, deep lake with water depths in excess of 150 m are untenable given the sedimentary facies and diatom floras that dominate the valley. Unexhumed valleys such as Sierra Valley to the east and Long Valley to the northwest which contain large meadows traversed by braided streams are probably good analogs for the conditions that existed during the accumulation of the Mohawk Valley deposits.« less

Speckle POF sensor for detecting vital signs of patients

NASA Astrophysics Data System (ADS)

Lomer, M.; Rodriguez-Cobo, L.; Revilla, P.; Herrero, G.; Madruga, F.; Lopez-Higuera, J. M.

2014-05-01

In this work, both arterial pulse and respiratory rate have been successfully measured based on changes in speckle patterns of multimode fibers. Using two fiber-based transducers, one located on the wrist and another in the chest, both disturbances were transmitted to the fiber, varying the speckle pattern. These variations of the speckle pattern were captured using a commercial webcam and further processed using different methods. The achieved results have been presented and the simultaneous monitoring of both vital signs has been also discussed. The feasibility to use the proposed sensor system for this application is demonstrated.

Progress in speckle-shift strain measurement

NASA Technical Reports Server (NTRS)

Lant, Christian T.; Barranger, John P.; Oberle, Lawrence G.; Greer, Lawrence C., III

1991-01-01

The Instrumentation and Control Technology Division of the Lewis Research Center has been developing an in-house capability to make one dimensional and two dimensional optical strain measurements on high temperature test specimens. The measurements are based on a two-beam speckle-shift technique. The development of composite materials for use in high temperature applications is generating interest in using the speckle-shift technique to measure strains on small diameter fibers and wires of various compositions. The results of preliminary speckle correlation tests on wire and fiber specimens are covered, and the advanced system currently under development is described.

Interference in astronomical speckle patterns

NASA Technical Reports Server (NTRS)

Breckinridge, J. B.

1976-01-01

Astronomical speckle patterns are examined in an atmospheric-optics context in order to determine what kind of image quality is to be expected from several different imaging techniques. The model used to describe the instantaneous complex field distribution across the pupil of a large telescope regards the pupil as a deep phase grating with a periodicity given by the size of the cell of uniform phase or the refractive index structure function. This model is used along with an empirical formula derived purely from the physical appearance of the speckle patterns to discuss the orders of interference in astronomical speckle patterns.

Speckle-correlation analysis of the microcapillary blood circulation in nail bed

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vilenskii, M A; Agafonov, D N; Zimnyakov, D A

2011-04-30

We present the results of the experimental studies of the possibility of monitoring the blood microcirculation in human finger nail bed with application of speckle-correlation analysis, based on estimating the contrast of time-averaged dynamic speckles. The hemodynamics at normal blood circulation and under conditions of partially suppressed blood circulation is analysed. A microscopic analysis is performed to visualise the structural changes in capillaries that are caused by suppressing blood circulation. The problems and prospects of speckle-correlation monitoring of the nail bed microhemodynamics under laboratory and clinical conditions are discussed. (optical technologies in biophysics and medicine)

The temporal dynamics of carbon dioxide under snow in a high elevation Rocky Mountain subalpine forest and meadow

Treesearch

R. C. Musselman; W. J. Massman; J. M. Frank; J. L. Korfmacher

2005-01-01

Carbon dioxide (CO2) concentration under snow was examined through two winter seasons at a 3100 m elevation subalpine site in the Snowy Range of Wyoming. CO2 was monitored every half hour at the soil/snow interface, and at about 25 cm soil depth the second year, in a meadow and in an adjacent forest. CO2 under snow in the meadow was significantly higher than that in...

Frame rate required for speckle tracking echocardiography: A quantitative clinical study with open-source, vendor-independent software.

PubMed

Negoita, Madalina; Zolgharni, Massoud; Dadkho, Elham; Pernigo, Matteo; Mielewczik, Michael; Cole, Graham D; Dhutia, Niti M; Francis, Darrel P

2016-09-01

To determine the optimal frame rate at which reliable heart walls velocities can be assessed by speckle tracking. Assessing left ventricular function with speckle tracking is useful in patient diagnosis but requires a temporal resolution that can follow myocardial motion. In this study we investigated the effect of different frame rates on the accuracy of speckle tracking results, highlighting the temporal resolution where reliable results can be obtained. 27 patients were scanned at two different frame rates at their resting heart rate. From all acquired loops, lower temporal resolution image sequences were generated by dropping frames, decreasing the frame rate by up to 10-fold. Tissue velocities were estimated by automated speckle tracking. Above 40 frames/s the peak velocity was reliably measured. When frame rate was lower, the inter-frame interval containing the instant of highest velocity also contained lower velocities, and therefore the average velocity in that interval was an underestimate of the clinically desired instantaneous maximum velocity. The higher the frame rate, the more accurately maximum velocities are identified by speckle tracking, until the frame rate drops below 40 frames/s, beyond which there is little increase in peak velocity. We provide in an online supplement the vendor-independent software we used for automatic speckle-tracked velocity assessment to help others working in this field. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Laser-induced speckle scatter patterns in Bacillus colonies

PubMed Central

Kim, Huisung; Singh, Atul K.; Bhunia, Arun K.; Bae, Euiwon

2014-01-01

Label-free bacterial colony phenotyping technology called BARDOT (Bacterial Rapid Detection using Optical scattering Technology) provided successful classification of several different bacteria at the genus, species, and serovar level. Recent experiments with colonies of Bacillus species provided strikingly different characteristics of elastic light scatter (ELS) patterns, which were comprised of random speckles compared to other bacteria, which are dominated by concentric rings and spokes. Since this laser-based optical sensor interrogates the whole volume of the colony, 3-D information of micro- and macro-structures are all encoded in the far-field scatter patterns. Here, we present a theoretical model explaining the underlying mechanism of the speckle formation by the colonies from Bacillus species. Except for Bacillus polymyxa, all Bacillus spp. produced random bright spots on the imaging plane, which presumably dependent on the cellular and molecular organization and content within the colony. Our scatter model-based analysis revealed that colony spread resulting in variable surface roughness can modify the wavefront of the scatter field. As the center diameter of the Bacillus spp. colony grew from 500 to 900 μm, average speckles area decreased two-fold and the number of small speckles increased seven-fold. In conclusion, as Bacillus colony grows, the average speckle size in the scatter pattern decreases and the number of smaller speckle increases due to the swarming growth characteristics of bacteria within the colony. PMID:25352840

Speckle-field propagation in 'frozen' turbulence: brightness function approach

NASA Astrophysics Data System (ADS)

Dudorov, Vadim V.; Vorontsov, Mikhail A.; Kolosov, Valeriy V.

2006-08-01

Speckle-field long- and short-exposure spatial correlation characteristics for target-in-the-loop (TIL) laser beam propagation and scattering in atmospheric turbulence are analyzed through the use of two different approaches: the conventional Monte Carlo (MC) technique and the recently developed brightness function (BF) method. Both the MC and the BF methods are applied to analysis of speckle-field characteristics averaged over target surface roughness realizations under conditions of 'frozen' turbulence. This corresponds to TIL applications where speckle-field fluctuations associated with target surface roughness realization updates occur within a time scale that can be significantly shorter than the characteristic atmospheric turbulence time. Computational efficiency and accuracy of both methods are compared on the basis of a known analytical solution for the long-exposure mutual correlation function. It is shown that in the TIL propagation scenarios considered the BF method provides improved accuracy and requires significantly less computational time than the conventional MC technique. For TIL geometry with a Gaussian outgoing beam and Lambertian target surface, both analytical and numerical estimations for the speckle-field long-exposure correlation length are obtained. Short-exposure speckle-field correlation characteristics corresponding to propagation in 'frozen' turbulence are estimated using the BF method. It is shown that atmospheric turbulence-induced static refractive index inhomogeneities do not significantly affect the characteristic correlation length of the speckle field, whereas long-exposure spatial correlation characteristics are strongly dependent on turbulence strength.

Speckle-field propagation in 'frozen' turbulence: brightness function approach.

PubMed

Dudorov, Vadim V; Vorontsov, Mikhail A; Kolosov, Valeriy V

2006-08-01

Speckle-field long- and short-exposure spatial correlation characteristics for target-in-the-loop (TIL) laser beam propagation and scattering in atmospheric turbulence are analyzed through the use of two different approaches: the conventional Monte Carlo (MC) technique and the recently developed brightness function (BF) method. Both the MC and the BF methods are applied to analysis of speckle-field characteristics averaged over target surface roughness realizations under conditions of 'frozen' turbulence. This corresponds to TIL applications where speckle-field fluctuations associated with target surface roughness realization updates occur within a time scale that can be significantly shorter than the characteristic atmospheric turbulence time. Computational efficiency and accuracy of both methods are compared on the basis of a known analytical solution for the long-exposure mutual correlation function. It is shown that in the TIL propagation scenarios considered the BF method provides improved accuracy and requires significantly less computational time than the conventional MC technique. For TIL geometry with a Gaussian outgoing beam and Lambertian target surface, both analytical and numerical estimations for the speckle-field long-exposure correlation length are obtained. Short-exposure speckle-field correlation characteristics corresponding to propagation in 'frozen' turbulence are estimated using the BF method. It is shown that atmospheric turbulence-induced static refractive index inhomogeneities do not significantly affect the characteristic correlation length of the speckle field, whereas long-exposure spatial correlation characteristics are strongly dependent on turbulence strength.

Improvements In A Laser-Speckle Surface-Strain Gauge

NASA Technical Reports Server (NTRS)

Lant, Christian T.

1996-01-01

Compact optical subsystem incorporates several improvements over optical subsystems of previous versions of laser-speckle surface-strain gauge: faster acquisition of data, faster response to transients, reduced size and weight, lower cost, and less complexity. Principle of operation described previously in "Laser System Measures Two-Dimensional Strain" (LEW-15046), and "Two-Dimensional Laser-Speckle Surface-Strain Gauge" (LEW-15337).

Shift-Invariant Image Reconstruction of Speckle-Degraded Images Using Bispectrum Estimation

DTIC Science & Technology

1990-05-01

process with the requisite negative exponential pelf. I call this model the Negative Exponential Model ( NENI ). The NENI flowchart is seen in Figure 6...Figure ]3d-g. Statistical Histograms and Phase for the RPj NG EXP FDF MULT METHOD FILuteC 14a. Truth Object Speckled Via the NENI HISTOGRAM OF SPECKLE

Light-intensity grazing improves alpine meadow productivity and adaption to climate change on the Tibetan Plateau.

PubMed

Zhang, Tao; Zhang, Yangjian; Xu, Mingjie; Zhu, Juntao; Wimberly, Michael C; Yu, Guirui; Niu, Shuli; Xi, Yi; Zhang, Xianzhou; Wang, Jingsheng

2015-10-30

To explore grazing effects on carbon fluxes in alpine meadow ecosystems, we used a paired eddy-covariance (EC) system to measure carbon fluxes in adjacent fenced (FM) and grazed (GM) meadows on the Tibetan plateau. Gross primary productivity (GPP) and ecosystem respiration (Re) were greater at GM than FM for the first two years of fencing. In the third year, the productivity at FM increased to a level similar to the GM site. The higher productivity at GM was mainly caused by its higher photosynthetic capacity. Grazing exclusion did not increase carbon sequestration capacity for this alpine grassland system. The higher optimal photosynthetic temperature and the weakened ecosystem response to climatic factors at GM may help to facilitate the adaption of alpine meadow ecosystems to changing climate.

CDKL5 influences RNA splicing activity by its association to the nuclear speckle molecular machinery.

PubMed

Ricciardi, Sara; Kilstrup-Nielsen, Charlotte; Bienvenu, Thierry; Jacquette, Aurélia; Landsberger, Nicoletta; Broccoli, Vania

2009-12-01

Mutations in the human X-linked cyclin-dependent kinase-like 5 (CDKL5) gene have been shown to cause severe neurodevelopmental disorders including infantile spasms, encephalopathy, West-syndrome and an early-onset variant of Rett syndrome. CDKL5 is a serine/threonine kinase whose involvement in Rett syndrome can be inferred by its ability to directly bind and mediate phosphorylation of MeCP2. However, it remains to be elucidated how CDKL5 exerts its function. Here, we report that CDKL5 localizes to specific nuclear foci referred to as nuclear speckles in both cell lines and tissues. These sub-nuclear structures are traditionally considered as storage/modification sites of pre-mRNA splicing factors. Interestingly, we provide evidence that CDKL5 regulates the dynamic behaviour of nuclear speckles. Indeed, CDKL5 overexpression leads to nuclear speckle disassembly, and this event is strictly dependent on its kinase activity. Conversely, its down-regulation affects nuclear speckle morphology leading to abnormally large and uneven speckles. Similar results were obtained for primary adult fibroblasts isolated from CDKL5-mutated patients. Altogether, these findings indicate that CDKL5 controls nuclear speckle morphology probably by regulating the phosphorylation state of splicing regulatory proteins. Nuclear speckles are dynamic sites that can continuously supply splicing factors to active transcription sites, where splicing occurs. Notably, we proved that CDKL5 influences alternative splicing, at least as proved in heterologous minigene assays. In conclusion, we provide evidence that CDKL5 is involved indirectly in pre-mRNA processing, by controlling splicing factor dynamics. These findings identify a biological process whose disregulation might affect neuronal maturation and activity in CDKL5-related disorders.

Influence of ultrasound speckle tracking strategies for motion and strain estimation.

PubMed

Curiale, Ariel H; Vegas-Sánchez-Ferrero, Gonzalo; Aja-Fernández, Santiago

2016-08-01

Speckle Tracking is one of the most prominent techniques used to estimate the regional movement of the heart based on ultrasound acquisitions. Many different approaches have been proposed, proving their suitability to obtain quantitative and qualitative information regarding myocardial deformation, motion and function assessment. New proposals to improve the basic algorithm usually focus on one of these three steps: (1) the similarity measure between images and the speckle model; (2) the transformation model, i.e. the type of motion considered between images; (3) the optimization strategies, such as the use of different optimization techniques in the transformation step or the inclusion of structural information. While many contributions have shown their good performance independently, it is not always clear how they perform when integrated in a whole pipeline. Every step will have a degree of influence over the following and hence over the final result. Thus, a Speckle Tracking pipeline must be analyzed as a whole when developing novel methods, since improvements in a particular step might be undermined by the choices taken in further steps. This work presents two main contributions: (1) We provide a complete analysis of the influence of the different steps in a Speckle Tracking pipeline over the motion and strain estimation accuracy. (2) The study proposes a methodology for the analysis of Speckle Tracking systems specifically designed to provide an easy and systematic way to include other strategies. We close the analysis with some conclusions and recommendations that can be used as an orientation of the degree of influence of the models for speckle, the transformation models, interpolation schemes and optimization strategies over the estimation of motion features. They can be further use to evaluate and design new strategy into a Speckle Tracking system. Copyright © 2016 Elsevier B.V. All rights reserved.

Super-resolution photoacoustic microscopy using joint sparsity

NASA Astrophysics Data System (ADS)

Burgholzer, P.; Haltmeier, M.; Berer, T.; Leiss-Holzinger, E.; Murray, T. W.

2017-07-01

We present an imaging method that uses the random optical speckle patterns that naturally emerge as light propagates through strongly scattering media as a structured illumination source for photoacoustic imaging. Our approach, termed blind structured illumination photoacoustic microscopy (BSIPAM), was inspired by recent work in fluorescence microscopy where super-resolution imaging was demonstrated using multiple unknown speckle illumination patterns. We extend this concept to the multiple scattering domain using photoacoustics (PA), with the speckle pattern serving to generate ultrasound. The optical speckle pattern that emerges as light propagates through diffuse media provides structured illumination to an object placed behind a scattering wall. The photoacoustic signal produced by such illumination is detected using a focused ultrasound transducer. We demonstrate through both simulation and experiment, that by acquiring multiple photoacoustic images, each produced by a different random and unknown speckle pattern, an image of an absorbing object can be reconstructed with a spatial resolution far exceeding that of the ultrasound transducer. We experimentally and numerically demonstrate a gain in resolution of more than a factor of two by using multiple speckle illuminations. The variations in the photoacoustic signals generated with random speckle patterns are utilized in BSIPAM using a novel reconstruction algorithm. Exploiting joint sparsity, this algorithm is capable of reconstructing the absorbing structure from measured PA signals with a resolution close to the speckle size. Another way to excite random excitation for photoacoustic imaging are small absorbing particles, including contrast agents, which flow through small vessels. For such a set-up, the joint-sparsity is generated by the fact that all the particles move in the same vessels. Structured illumination in that case is not necessary.

Modeling Alpine Meadow Restoration Techniques and their Effects on Stream Stage Regimes

NASA Astrophysics Data System (ADS)

Moore, C. E.; Lundquist, J. D.; Loheide, S. P.

2010-12-01

Meadow ecosystems in the Sierra Nevada of California often suffer from negative anthropogenic impacts, resulting in stream incision and meadow aridification. Groundwater dependent ecosystems, such as meadows, are especially vulnerable to channel degradation because alteration of stream stage propagates through the groundwater system to affect riparian vegetation. Restoration aimed at raising water table elevation of degraded meadow systems is becoming a salient and viable option as managers recognize the importance of intact headwaters. Stream stage controls groundwater levels and thus, vegetation communities, more dramatically than stream discharge in groundwater dependent ecosystems. Here we use a one dimensional hydraulic model, Hydraulic Engineering Center - River Analysis System (HEC-RAS) to model stream stage along the Tuolumne River, given a time series of stream discharge. Extensive hydroclimatic monitoring since 2001, and groundwater monitoring since 2006, make Tuolumne Meadows, in Yosemite National Park, California a prime location for a validated case study, applicable to other snow dominated basins. In order to determine the most plausible, efficient and effective strategy of restoring impacted meadows, different management scenarios are modeled. HEC-RAS modeling provides critical stream stage boundary conditions for groundwater modeling. Scenarios are chosen that are most effective at increasing stream stage and therefore water table levels. The effectiveness is quantified by modeling how each scenario changes the rating curve for a particular channel. Additionally, surface stage modeling allows decision makers to see under what flow conditions and what time period of the hydrograph is affected by restoration. Quantification of stream stage alterations is key for understanding restoration impacts during the short growing season in alpine meadows. Results of HEC-RAS modeling at Tuolumne Meadows are presented in the following formats to highlight the ways in which this work can be used as a vital tool in management decisions regarding meadow restoration. First, direct changes to the resulting stream stage time series are used to illustrate the magnitude of change among scenarios. Second, synthetic rating curves are compared so that the flow regimes which are highly sensitive to a particular restoration strategy can be readily identified. Third, an empirical probability density function describing the stream stage regime will be provided for each scenario to illustrate the overall effectiveness of each restoration technique in changing water levels. Finally, the probability of exceedance for bankfull stage, the depth associated with the onset of oxygen stress, and the depth associated with the onset of water stress will be presented to demonstrate changes to stream levels that are believed to have ecological significance. Investigation of multiple scenarios allows an informed decision based on sound science that will help achieve restoration goals in the future.

Geochemistry of Mine Waste and Mill Tailings, Meadow Deposits, Streambed Sediment, and General Hydrology and Water Quality for the Frohner Meadows Area, Upper Lump Gulch, Jefferson County, Montana

USGS Publications Warehouse

Klein, Terry L.; Cannon, Michael R.; Fey, David L.

2004-01-01

Frohner Meadows, an area of low-topographic gradient subalpine ponds and wetlands in glaciated terrane near the headwaters of Lump Gulch (a tributary of Prickly Pear Creek), is located about 15 miles west of the town of Clancy, Montana, in the Helena National Forest. Mining and ore treatment of lead-zinc-silver veins in granitic rocks of the Boulder batholith over the last 120 years from two sites (Frohner mine and the Nellie Grant mine) has resulted in accumulations of mine waste and mill tailings that have been distributed downslope and downstream by anthropogenic and natural processes. This report presents the results of an investigation of the geochemistry of the wetlands, streams, and unconsolidated-sediment deposits and the hydrology, hydrogeology, and water quality of the area affected by these sources of ore-related metals. Ground water sampled from most shallow wells in the meadow system contained high concentrations of arsenic, exceeding the Montana numeric water-quality standard for human health. Transport of cadmium and zinc in ground water is indicated at one site near Nellie Grant Creek based on water-quality data from one well near the creek. Mill tailings deposited in upper Frohner Meadow contribute large arsenic loads to Frohner Meadows Creek; Nellie Grant Creek contributes large arsenic, cadmium, and zinc loads to upper Frohner Meadows. Concentrations of total-recoverable cadmium, copper, lead, and zinc in most surface-water sites downstream from the Nellie Grant mine area exceeded Montana aquatic-life standards. Nearly all samples of surface water and ground water had neutral to slightly alkaline pH values. Concentrations of arsenic, cadmium, lead, and zinc in streambed sediment in the entire meadow below the mine waste and mill tailings accumulations are highly enriched relative to regional watershed-background concentrations and exceed consensus-based, probable-effects concentrations for streambed sediment at most sites. Cadmium, copper, and zinc typically are adsorbed to the surface coatings of streambed-sediment grains. Mine waste and mill tailings contain high concentrations of arsenic, cadmium, copper, lead, and zinc in a quartz-rich matrix. Most of the waste sites that were sampled had low acid-generating capacity, although one site (fine-grained mill tailings from the Nellie Grant mine deposited in the upper part of lower Frohner Meadows) had extremely high acid-generating potential because of abundant fine-grained pyrite. Two distinct sites were identified as metal sources based on streambed-sediment samples, cores in the meadow substrate, and mine and mill-tailings samples. The Frohner mine and mill site contribute material rich in arsenic and lead; similar material from the Nellie Grant mine and mill site is rich in cadmium and zinc.

SPECKLE OBSERVATIONS OF BINARY STARS WITH THE WIYN TELESCOPE. VII. MEASURES DURING 2008-2009

DOE Office of Scientific and Technical Information (OSTI.GOV)

Horch, Elliott P.; Bahi, Lizzie Anne P.; Gaulin, Joseph R.

2012-01-15

Five hundred thirty-one speckle measures of binary stars are reported. These data were taken mainly during the period 2008 June through 2009 October at the WIYN 3.5 m Telescope at Kitt Peak and represent the last data set of single-filter speckle observations taken in the WIYN speckle program prior to the use of the current two-channel speckle camera. The astrometric and photometric precision of these observations is consistent with previous papers in this series: we obtain a typical linear measurement uncertainty of approximately 2.5 mas, and the magnitude differences reported have typical uncertainties in the range of 0.1-0.14 mag. Inmore » combination with measures already in the literature, the data presented here permit the revision of the orbit of A 1634AB (= HIP 76041) and the first determination of visual orbital elements for HDS 1895 (= HIP 65982).« less

Assessing blood coagulation status with laser speckle rheology

PubMed Central

Tripathi, Markandey M.; Hajjarian, Zeinab; Van Cott, Elizabeth M.; Nadkarni, Seemantini K.

2014-01-01

We have developed and investigated a novel optical approach, Laser Speckle Rheology (LSR), to evaluate a patient’s coagulation status by measuring the viscoelastic properties of blood during coagulation. In LSR, a blood sample is illuminated with laser light and temporal speckle intensity fluctuations are measured using a high-speed CMOS camera. During blood coagulation, changes in the viscoelastic properties of the clot restrict Brownian displacements of light scattering centers within the sample, altering the rate of speckle intensity fluctuations. As a result, blood coagulation status can be measured by relating the time scale of speckle intensity fluctuations with clinically relevant coagulation metrics including clotting time and fibrinogen content. Our results report a close correlation between coagulation metrics measured using LSR and conventional coagulation results of activated partial thromboplastin time, prothrombin time and functional fibrinogen levels, creating the unique opportunity to evaluate a patient’s coagulation status in real-time at the point of care. PMID:24688816

Scattering of Gaussian Beams by Disordered Particulate Media

NASA Technical Reports Server (NTRS)

Mishchenko, Michael I.; Dlugach, Janna M.

2016-01-01

A frequently observed characteristic of electromagnetic scattering by a disordered particulate medium is the absence of pronounced speckles in angular patterns of the scattered light. It is known that such diffuse speckle-free scattering patterns can be caused by averaging over randomly changing particle positions and/or over a finite spectral range. To get further insight into the possible physical causes of the absence of speckles, we use the numerically exact superposition T-matrix solver of the Maxwell equations and analyze the scattering of plane-wave and Gaussian beams by representative multi-sphere groups. We show that phase and amplitude variations across an incident Gaussian beam do not serve to extinguish the pronounced speckle pattern typical of plane-wave illumination of a fixed multi-particle group. Averaging over random particle positions and/or over a finite spectral range is still required to generate the classical diffuse speckle-free regime.

Uncooperative target-in-the-loop performance with backscattered speckle-field effects

NASA Astrophysics Data System (ADS)

Kansky, Jan E.; Murphy, Daniel V.

2007-09-01

Systems utilizing target-in-the-loop (TIL) techniques for adaptive optics phase compensation rely on a metric sensor to perform a hill climbing algorithm that maximizes the far-field Strehl ratio. In uncooperative TIL, the metric signal is derived from the light backscattered from a target. In cases where the target is illuminated with a laser with suffciently long coherence length, the potential exists for the validity of the metric sensor to be compromised by speckle-field effects. We report experimental results from a scaled laboratory designed to evaluate TIL performance in atmospheric turbulence and thermal blooming conditions where the metric sensors are influenced by varying degrees of backscatter speckle. We compare performance of several TIL configurations and metrics for cases with static speckle, and for cases with speckle fluctuations within the frequency range that the TIL system operates. The roles of metric sensor filtering and system bandwidth are discussed.

Speckle noise reduction in quantitative optical metrology techniques by application of the discrete wavelet transformation

NASA Astrophysics Data System (ADS)

Furlong, Cosme; Pryputniewicz, Ryszard J.

2002-06-01

Effective suppression of speckle noise content in interferometric data images can help in improving accuracy and resolution of the results obtained with interferometric optical metrology techniques. In this paper, novel speckle noise reduction algorithms based on the discrete wavelet transformation are presented. The algorithms proceed by: (a) estimating the noise level contained in the interferograms of interest, (b) selecting wavelet families, (c) applying the wavelet transformation using the selected families, (d) wavelet thresholding, and (e) applying the inverse wavelet transformation, producing denoised interferograms. The algorithms are applied to the different stages of the processing procedures utilized for generation of quantitative speckle correlation interferometry data of fiber-optic based opto-electronic holography (FOBOEH) techniques, allowing identification of optimal processing conditions. It is shown that wavelet algorithms are effective for speckle noise reduction while preserving image features otherwise faded with other algorithms.

Speckle statistics in adaptive optics images at visible wavelengths

NASA Astrophysics Data System (ADS)

Stangalini, Marco; Pedichini, Fernando; Ambrosino, Filippo; Centrone, Mauro; Del Moro, Dario

2016-07-01

Residual speckles in adaptive optics (AO) images represent a well known limitation to the achievement of the contrast needed for faint stellar companions detection. Speckles in AO imagery can be the result of either residual atmospheric aberrations, not corrected by the AO, or slowly evolving aberrations induced by the optical system. In this work we take advantage of new high temporal cadence (1 ms) data acquired by the SHARK forerunner experiment at the Large Binocular Telescope (LBT), to characterize the AO residual speckles at visible waveleghts. By means of an automatic identification of speckles, we study the main statistical properties of AO residuals. In addition, we also study the memory of the process, and thus the clearance time of the atmospheric aberrations, by using information Theory. These information are useful for increasing the realism of numerical simulations aimed at assessing the instrumental performances, and for the application of post-processing techniques on AO imagery.

Experimental comparison of photogrammetry for additive manufactured parts with and without laser speckle projection

NASA Astrophysics Data System (ADS)

Sims-Waterhouse, D.; Bointon, P.; Piano, S.; Leach, R. K.

2017-06-01

In this paper we show that, by using a photogrammetry system with and without laser speckle, a large range of additive manufacturing (AM) parts with different geometries, materials and post-processing textures can be measured to high accuracy. AM test artefacts have been produced in three materials: polymer powder bed fusion (nylon-12), metal powder bed fusion (Ti-6Al-4V) and polymer material extrusion (ABS plastic). Each test artefact was then measured with the photogrammetry system in both normal and laser speckle projection modes and the resulting point clouds compared with the artefact CAD model. The results show that laser speckle projection can result in a reduction of the point cloud standard deviation from the CAD data of up to 101 μm. A complex relationship with surface texture, artefact geometry and the laser speckle projection is also observed and discussed.

Robust sensor for turbidity measurement from light scattering and absorbing liquids.

PubMed

Kontturi, Ville; Turunen, Petri; Uozumi, Jun; Peiponen, Kai-Erik

2009-12-01

Internationally standardized turbidity measurements for probing solid particles in liquid are problematic in the case of simultaneous light scattering and absorption. A method and a sensor to determine the turbidity in the presence of light absorption are presented. The developed sensor makes use of the total internal reflection of a laser beam at the liquid-prism interface, and the turbidity is assessed using the concept of laser speckle pattern. Using average filtering in speckle data analyzing the observed dynamic speckle pattern, which is due to light scattering from particles and the static speckle due to stray light of the sensor, can be separated from each other. Good correlation between the standard deviation of dynamic speckle and turbidity value for nonabsorbing and for absorbing liquids was observed. The sensor is suggested, for instance, for the measurement of ill-behaved as well as small-volume turbid liquids in both medicine and process industry.

A decade of innovation with laser speckle metrology

NASA Astrophysics Data System (ADS)

Ettemeyer, Andreas

2003-05-01

Speckle Pattern Interferometry has emerged from the experimental substitution of holographic interferometry to become a powerful problem solving tool in research and industry. The rapid development of computer and digital imaging techniques in combination with minaturization of the optical equipment led to new applications which had not been anticipated before. While classical holographic interferometry had always required careful consideration of the environmental conditions such as vibration, noise, light, etc. and could generally only be performed in the optical laboratory, it is now state of the art, to handle portable speckle measuring equipment at almost any place. During the last decade, the change in design and technique has dramatically influenced the range of applications of speckle metrology and opened new markets. The integration of recent research results into speckle measuring equipment has led to handy equipment, simplified the operation and created high quality data output.

Development of basic theories and techniques for determining stresses in rotating turbine or compressor blades

NASA Technical Reports Server (NTRS)

Chien, C. H.; Swinson, W. F.; Turner, J. L.; Moslehy, F. A.; Ranson, W. F.

1980-01-01

A method for measuring in-plane displacement of a rotating structure by using two laser speckle photographs is described. From the displacement measurements one can calculate strains and stresses due to a centrifugal load. This technique involves making separate speckle photographs of a test model. One photograph is made with the model loaded (model is rotating); the second photograph is made with no load on the model (model is stationary). A sandwich is constructed from the two speckle photographs and data are recovered in a manner similar to that used with conventional speckle photography. The basic theory, experimental procedures of this method, and data analysis of a simple rotating specimen are described. In addition the measurement of in-plane surface displacement components of a deformed solid, and the application of the coupled laser speckle interferometry and boundary-integral solution technique to two dimensional elasticity problems are addressed.

Effects of habitat management treatments on plant community composition and biomass in a Montane wetland

USGS Publications Warehouse

Austin, J.E.; Keough, J.R.; Pyle, W.H.

2007-01-01

Grazing and burning are commonly applied practices that can impact the diversity and biomass of wetland plant communities. We evaluated the vegetative response of wetlands and adjacent upland grasslands to four treatment regimes (continuous idle, fall prescribed burning followed by idle, annual fall cattle grazing, and rotation of summer grazing and idle) commonly used by the U.S. Fish and Wildlife Service. Our study area was Grays Lake, a large, montane wetland in southeastern Idaho that is bordered by extensive wet meadows. We identified seven plant cover types, representing the transition from dry meadow to deep wetland habitats: mixed deep marsh, spikerush slough, Baltic rush (Juncus balticus), moist meadow, alkali, mesic meadow, and dry meadow. We compared changes in community composition and total aboveground biomass of each plant cover type between 1998, when all units had been idled for three years, and 1999 (1 yr post-treatment) and 2000 (2 yr post-treatment). Analysis using non-metric multidimensional scaling indicated that compositional changes varied among cover types, treatments, and years following treatment. Treatment-related changes in community composition were greatest in mixed deep marsh, Baltic rush, and mesic meadow. In mixed deep marsh and Baltic rush, grazing and associated trampling contributed to changes in the plant community toward more open water and aquatic species and lower dominance of Baltic rush; grazing and trampling also seemed to contribute to increased cover in mesic meadow. Changing hydrological conditions, from multiple years of high water to increasing drought, was an important factor influencing community composition and may have interacted with management treatments. Biomass differed among treatments and between years within cover types. In the wettest cover types, fall burning and grazing rotation treatments had greater negative impact on biomass than the idle treatment, but in drier cover types, summer grazing stimulated biomass production. Our results illustrate the spatial and temporal complexity of the transition between dry meadow and wetland habitats, and variable interactions among plant communities, treatments, and annual wetland conditions. ?? 2007, The Society of Wetland Scientists.

Food for Pollinators: Quantifying the Nectar and Pollen Resources of Urban Flower Meadows.

PubMed

Hicks, Damien M; Ouvrard, Pierre; Baldock, Katherine C R; Baude, Mathilde; Goddard, Mark A; Kunin, William E; Mitschunas, Nadine; Memmott, Jane; Morse, Helen; Nikolitsi, Maria; Osgathorpe, Lynne M; Potts, Simon G; Robertson, Kirsty M; Scott, Anna V; Sinclair, Frazer; Westbury, Duncan B; Stone, Graham N

2016-01-01

Planted meadows are increasingly used to improve the biodiversity and aesthetic amenity value of urban areas. Although many 'pollinator-friendly' seed mixes are available, the floral resources these provide to flower-visiting insects, and how these change through time, are largely unknown. Such data are necessary to compare the resources provided by alternative meadow seed mixes to each other and to other flowering habitats. We used quantitative surveys of over 2 million flowers to estimate the nectar and pollen resources offered by two exemplar commercial seed mixes (one annual, one perennial) and associated weeds grown as 300m2 meadows across four UK cities, sampled at six time points between May and September 2013. Nectar sugar and pollen rewards per flower varied widely across 65 species surveyed, with native British weed species (including dandelion, Taraxacum agg.) contributing the top five nectar producers and two of the top ten pollen producers. Seed mix species yielding the highest rewards per flower included Leontodon hispidus, Centaurea cyanus and C. nigra for nectar, and Papaver rhoeas, Eschscholzia californica and Malva moschata for pollen. Perennial meadows produced up to 20x more nectar and up to 6x more pollen than annual meadows, which in turn produced far more than amenity grassland controls. Perennial meadows produced resources earlier in the year than annual meadows, but both seed mixes delivered very low resource levels early in the year and these were provided almost entirely by native weeds. Pollen volume per flower is well predicted statistically by floral morphology, and nectar sugar mass and pollen volume per unit area are correlated with flower counts, raising the possibility that resource levels can be estimated for species or habitats where they cannot be measured directly. Our approach does not incorporate resource quality information (for example, pollen protein or essential amino acid content), but can easily do so when suitable data exist. Our approach should inform the design of new seed mixes to ensure continuity in floral resource availability throughout the year, and to identify suitable species to fill resource gaps in established mixes.

Food for Pollinators: Quantifying the Nectar and Pollen Resources of Urban Flower Meadows

PubMed Central

Hicks, Damien M.; Ouvrard, Pierre; Baldock, Katherine C. R.; Baude, Mathilde; Goddard, Mark A.; Kunin, William E.; Mitschunas, Nadine; Memmott, Jane; Morse, Helen; Nikolitsi, Maria; Osgathorpe, Lynne M.; Potts, Simon G.; Robertson, Kirsty M.; Scott, Anna V.; Sinclair, Frazer; Westbury, Duncan B.; Stone, Graham N.

2016-01-01

Planted meadows are increasingly used to improve the biodiversity and aesthetic amenity value of urban areas. Although many ‘pollinator-friendly’ seed mixes are available, the floral resources these provide to flower-visiting insects, and how these change through time, are largely unknown. Such data are necessary to compare the resources provided by alternative meadow seed mixes to each other and to other flowering habitats. We used quantitative surveys of over 2 million flowers to estimate the nectar and pollen resources offered by two exemplar commercial seed mixes (one annual, one perennial) and associated weeds grown as 300m2 meadows across four UK cities, sampled at six time points between May and September 2013. Nectar sugar and pollen rewards per flower varied widely across 65 species surveyed, with native British weed species (including dandelion, Taraxacum agg.) contributing the top five nectar producers and two of the top ten pollen producers. Seed mix species yielding the highest rewards per flower included Leontodon hispidus, Centaurea cyanus and C. nigra for nectar, and Papaver rhoeas, Eschscholzia californica and Malva moschata for pollen. Perennial meadows produced up to 20x more nectar and up to 6x more pollen than annual meadows, which in turn produced far more than amenity grassland controls. Perennial meadows produced resources earlier in the year than annual meadows, but both seed mixes delivered very low resource levels early in the year and these were provided almost entirely by native weeds. Pollen volume per flower is well predicted statistically by floral morphology, and nectar sugar mass and pollen volume per unit area are correlated with flower counts, raising the possibility that resource levels can be estimated for species or habitats where they cannot be measured directly. Our approach does not incorporate resource quality information (for example, pollen protein or essential amino acid content), but can easily do so when suitable data exist. Our approach should inform the design of new seed mixes to ensure continuity in floral resource availability throughout the year, and to identify suitable species to fill resource gaps in established mixes. PMID:27341588

A survey of fishes associated with Hawaiian deep-water Halimeda kanaloana (Bryopsidales: Halimedaceae) and Avrainvillea sp. (Bryopsidales: Udoteaceae) meadows.

PubMed

Langston, Ross C; Spalding, Heather L

2017-01-01

The invasive macroalgal species Avrainvillea sp. and native species Halimeda kanaloana form expansive meadows that extend to depths of 80 m or more in the waters off of O'ahu and Maui, respectively. Despite their wide depth distribution, comparatively little is known about the biota associated with these macroalgal species. Our primary goals were to provide baseline information on the fish fauna associated with these deep-water macroalgal meadows and to compare the abundance and diversity of fishes between the meadow interior and sandy perimeters. Because both species form structurally complex three-dimensional canopies, we hypothesized that they would support a greater abundance and diversity of fishes when compared to surrounding sandy areas. We surveyed the fish fauna associated with these meadows using visual surveys and collections made with clove-oil anesthetic. Using these techniques, we recorded a total of 49 species from 25 families for H. kanaloana meadows and surrounding sandy areas, and 28 species from 19 families for Avrainvillea sp. habitats. Percent endemism was 28.6% and 10.7%, respectively. Wrasses (Family Labridae) were the most speciose taxon in both habitats (11 and six species, respectively), followed by gobies for H. kanaloana (six species). The wrasse Oxycheilinus bimaculatus and cardinalfish Apogonichthys perdix were the most frequently-occurring species within the H. kanaloana and Avrainvillea canopies, respectively. Obligate herbivores and food-fish species were rare in both habitats. Surprisingly, the density and abundance of small epibenthic fishes were greater in open sand than in the meadow canopy. In addition, species richness was also higher in open sand for Avrainvillea sp. We hypothesize that the dense holdfasts and rhizoids present within the meadow canopy may impede benthic-dwelling or bioturbator species, which accounted for 86% and 57% of individuals collected in sand adjacent to H. kanaloana and Avrainvillea sp. habitats, respectively. Of the 65 unique species recorded in this study, 16 (25%) were detected in clove oil stations alone, illustrating the utility of clove-oil anesthetic in assessing the diversity and abundance of small-bodied epibenthic fishes.

Analyzing speckle contrast for HiLo microscopy optimization.

PubMed

Mazzaferri, J; Kunik, D; Belisle, J M; Singh, K; Lefrançois, S; Costantino, S

2011-07-18

HiLo microscopy is a recently developed technique that provides both optical sectioning and fast imaging with a simple implementation and at a very low cost. The methodology combines widefield and speckled illumination images to obtain one optically sectioned image. Hence, the characteristics of such speckle illumination ultimately determine the quality of HiLo images and the overall performance of the method. In this work, we study how speckle contrast influence local variations of fluorescence intensity and brightness profiles of thick samples. We present this article as a guide to adjust the parameters of the system for optimizing the capabilities of this novel technology.

Analyzing speckle contrast for HiLo microscopy optimization

NASA Astrophysics Data System (ADS)

Mazzaferri, J.; Kunik, D.; Belisle, J. M.; Singh, K.; Lefrançois, S.; Costantino, S.

2011-07-01

HiLo microscopy is a recently developed technique that provides both optical sectioning and fast imaging with a simple implementation and at a very low cost. The methodology combines widefield and speckled illumination images to obtain one optically sectioned image. Hence, the characteristics of such speckle illumination ultimately determine the quality of HiLo images and the overall performance of the method. In this work, we study how speckle contrast influence local variations of fluorescence intensity and brightness profiles of thick samples. We present this article as a guide to adjust the parameters of the system for optimizing the capabilities of this novel technology.

Amplitude and intensity spatial interferometry; Proceedings of the Meeting, Tucson, AZ, Feb. 14-16, 1990

NASA Technical Reports Server (NTRS)

Breckinridge, Jim B. (Editor)

1990-01-01

Attention is given to such topics as ground interferometers, space interferometers, speckle-based and interferometry-based astronomical observations, adaptive and atmospheric optics, speckle techniques, and instrumentation. Particular papers are presented concerning recent progress on the IR Michelson array; the IOTA interferometer project; a space interferometer concept for the detection of extrasolar earth-like planets; IR speckle imaging at Palomar; optical diameters of stars measured with the Mt. Wilson Mark III interferometer; the IR array camera for interferometry with the cophased Multiple Mirror Telescope; optimization techniques appliesd to the bispectrum of one-dimensional IR astronomical speckle data; and adaptive optical iamging for extended objects.

Effect of Non-speckle Echo Signals on Tissue Characteristics for Liver Fibrosis using Probability Density Function of Ultrasonic B-mode image

NASA Astrophysics Data System (ADS)

Mori, Shohei; Hirata, Shinnosuke; Yamaguchi, Tadashi; Hachiya, Hiroyuki

To develop a quantitative diagnostic method for liver fibrosis using an ultrasound B-mode image, a probability imaging method of tissue characteristics based on a multi-Rayleigh model, which expresses a probability density function of echo signals from liver fibrosis, has been proposed. In this paper, an effect of non-speckle echo signals on tissue characteristics estimated from the multi-Rayleigh model was evaluated. Non-speckle signals were determined and removed using the modeling error of the multi-Rayleigh model. The correct tissue characteristics of fibrotic tissue could be estimated with the removal of non-speckle signals.

Laser speckle technique to study the effect of chemical pre-treatment on the quality of minimally processed apples

NASA Astrophysics Data System (ADS)

Minz, Preeti D.; Nirala, A. K.

2016-04-01

In the present study, the laser speckle technique has been used for the quality evaluation of chemically treated cut apples. Chemical pre-treatment includes 1% (w/v) solution of citric acid (CA), sodium chloride (SC), and a combination of CA and sodium chloride (CS). The variation in weight loss, respiration rate, total soluble solids (TSS), titratable acidity (TA), and absorbance of chemically treated cut apples stored at 5 °C was monitored for 11 d. The speckle grain size was calculated by an autocovariance method from the speckled images of freshly cut chemically treated apples. The effect of chemicals on TSS and the TA content variation of the cut apples were well correlated to the linear speckle grain size. Circular degree of polarization confirms the presence of a small scatterer and hence Rayleigh diffusion region. For all the treated cut apples, a decrease in the concentration of small particles nearly after the mid-period of storage results in the fast decay of circular degree of polarization. For non-invasive and fast analysis of the chemical constituent of fruits during minimal processing, the laser speckle can be practically used in the food industry.

Speckle photography during dynamic impact of an energetic material using laser-induced fluorescence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Asay, B.W.; Laabs, G.W.; Henson, B.F.

1997-08-01

Laser and white light speckle photography have been used to observe surface displacement in a number of materials and over a varied range of strain rates. However, each suffers from limitations. We have developed a novel application of speckle photography in very difficult environments by using laser-induced fluorescence to generate the speckle pattern. This permits confinement of the free surface without undue degradation of the correlation upon which speckle methods are based. We have applied this method to measure the surface displacement of a reactive material during dynamic deformation at moderate strain rates. Conventional methods were tried but were unsuccessful,more » necessitating a novel approach. To the best of our knowledge, neither high-speed laser nor white light speckle photography has been performed using energetic materials. These measurements are very difficult because of the low material strength (yield strength {approximately}8{endash}80 MPa), and because significant out-of-plane motion and surface disruption occur during fracture, and early during the deformation process. We report results from experiments in which these major problems have been overcome. {copyright} {ital 1997 American Institute of Physics.}« less

Spatial phase-shift dual-beam speckle interferometry.

PubMed

Gao, Xinya; Yang, Lianxiang; Wang, Yonghong; Zhang, Boyang; Dan, Xizuo; Li, Junrui; Wu, Sijin

2018-01-20

The spatial phase-shift technique has been successfully applied to an out-of-plane speckle interferometry system. Its application to a pure in-plane sensitive system has not been reported yet. This paper presents a novel optical configuration that enables the application of the spatial phase-shift technique to pure in-plane sensitive dual-beam speckle interferometry. The new spatial phase-shift dual-beam speckle interferometry (SPS-DBSP) uses a dual-beam in-plane electronic speckle pattern interferometry configuration with individual aperture shears, avoiding the interference in the object plane by the use of a low-coherence source, and different optical paths. The measured object is illuminated by two incoherent beams that are generated by a delay line, which is larger than the coherence length of the laser. The two beams reflected from the object surface interfere with each other at the CCD plane because of different optical paths. A spatial phase shift is introduced by the angle between the two apertures when they are mapped to the same optical axis. The phase of the in-plane deformation can directly be extracted from the speckle patterns by the Fourier transform method. The capability of SPS-DBSI is demonstrated by theoretical discussion as well as experiments.

Fine-resolution imaging of solar features using Phase-Diverse Speckle

NASA Technical Reports Server (NTRS)

Paxman, Richard G.

1995-01-01

Phase-diverse speckle (PDS) is a novel imaging technique intended to overcome the degrading effects of atmospheric turbulence on fine-resolution imaging. As its name suggests, PDS is a blend of phase-diversity and speckle-imaging concepts. PDS reconstructions on solar data were validated by simulation, by demonstrating internal consistency of PDS estimates, and by comparing PDS reconstructions with those produced from well accepted speckle-imaging processing. Several sources of error in data collected with the Swedish Vacuum Solar Telescope (SVST) were simulated: CCD noise, quantization error, image misalignment, and defocus error, as well as atmospheric turbulence model error. The simulations demonstrate that fine-resolution information can be reliably recovered out to at least 70% of the diffraction limit without significant introduction of image artifacts. Additional confidence in the SVST restoration is obtained by comparing its spatial power spectrum with previously-published power spectra derived from both space-based images and earth-based images corrected with traditional speckle-imaging techniques; the shape of the spectrum is found to match well the previous measurements. In addition, the imagery is found to be consistent with, but slightly sharper than, imagery reconstructed with accepted speckle-imaging techniques.

Is speckle tracking actually helpful for cardiac resynchronization therapy?

PubMed

Tanaka, Hidekazu; Hirata, Ken-Ichi

2016-06-01

What is the specific role of echocardiography in cardiac resynchronization therapy (CRT)? CRT has proven to be highly effective for improving symptoms and survival of patients with advanced heart failure (HF) and wide QRS. However, a significant minority of patients do not respond favorably to CRT on the basis of standard clinical selection criteria, including the electrocardiographic QRS width. Subsequently, echocardiographic assessment of left ventricular (LV) dyssynchrony has been considered useful for CRT for selected responders, but findings by multicenter studies suggest that its predictive value was not sufficiently robust to replace routine selection criteria for CRT. A more recent approach, however, using speckle-tracking echocardiography yields more accurate quantification of regional wall contraction. Speckle-tracking approaches have therefore generated a great deal of interest about their clinical applications for CRT. Although reports on speckle tracking have not been included in any recommendations as to whether patients should undergo CRT based on the current guidelines, speckle tracking can play an important supplementary part in CRT on the basis of a case-by-case clinical decision for challenging cases. Here, we review the strengths of speckle-tracking methods, and their current potential for clinical use in CRT.

Advanced Speckle Sensing for Internal Coronagraphs

NASA Technical Reports Server (NTRS)

Noecker, Charley; Shaklan, Stuart B.; Wallace, James K.; Kern, Brian D.; Give'on, Amir; Kasdin, Jeremy; Belikov, Ruslan; Kendrick, Steve

2011-01-01

A 4-8m telescope carrying a coronagraph instrument is a leading candidate for an anticipated flagship mission to detect and characterize Earth-size exoplanets in the 2020s. Many candidate coronagraph instruments have been proposed, and one has met many of the principal requirements for that mission. But the telescope and instrument will need exquisite stability and precise control of the incoming wavefront to enable detection of faint companions (10(exp -10) of the star) at an angular separation of 2-4 Airy radii. In particular, wavefront errors cause speckles in the image, and variations in those speckles can confound the exoplanet detection. This challenge is compounded by the background light from zodiacal dust around our Sun and the target star, which limits the speed with which we can estimate and correct the speckles. We are working on developing coherent speckle detection techniques that will allow rapid calibration of speckles on the science detector, allowing subtraction in post-processing or correction with deformable mirrors. The expected speed improvement allows a much quicker timeline for measurement & calibration, which reduces the required telescope stability requirement and eases both the flight system design and the challenge of ground testing. We will describe the experiments and summarize progress to date.

Vessel packaging effect in laser speckle contrast imaging and laser Doppler imaging.

PubMed

Fredriksson, Ingemar; Larsson, Marcus

2017-10-01

Laser speckle-based techniques are frequently used to assess microcirculatory blood flow. Perfusion estimates are calculated either by analyzing the speckle fluctuations over time as in laser Doppler flowmetry (LDF), or by analyzing the speckle contrast as in laser speckle contrast imaging (LSCI). The perfusion estimates depend on the amount of blood and its speed distribution. However, the perfusion estimates are commonly given in arbitrary units as they are nonlinear and depend on the magnitude and the spatial distribution of the optical properties in the tissue under investigation. We describe how the spatial confinement of blood to vessels, called the vessel packaging effect, can be modeled in LDF and LSCI, which affect the Doppler power spectra and speckle contrast, and the underlying bio-optical mechanisms for these effects. As an example, the perfusion estimate is reduced by 25% for LDF and often more than 50% for LSCI when blood is located in vessels with an average diameter of 40  μm, instead of being homogeneously distributed within the tissue. This significant effect can be compensated for only with knowledge of the average diameter of the vessels in the tissue. (2017) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).

Speckle reduction methods in laser-based picture projectors

NASA Astrophysics Data System (ADS)

Akram, M. Nadeem; Chen, Xuyuan

2016-02-01

Laser sources have been promised for many years to be better light sources as compared to traditional lamps or light-emitting diodes (LEDs) for projectors, which enable projectors having wide colour gamut for vivid image, super brightness and high contrast for the best picture quality, long lifetime for maintain free operation, mercury free, and low power consumption for green environment. A major technology obstacle in using lasers for projection has been the speckle noise caused by to the coherent nature of the lasers. For speckle reduction, current state of the art solutions apply moving parts with large physical space demand. Solutions beyond the state of the art need to be developed such as integrated optical components, hybrid MOEMS devices, and active phase modulators for compact speckle reduction. In this article, major methods reported in the literature for the speckle reduction in laser projectors are presented and explained. With the advancement in semiconductor lasers with largely reduced cost for the red, green and the blue primary colours, and the developed methods for their speckle reduction, it is hoped that the lasers will be widely utilized in different projector applications in the near future.

Enhanced diagnostic of skin conditions by polarized laser speckles: phantom studies and computer modeling

NASA Astrophysics Data System (ADS)

Tchvialeva, Lioudmila; Lee, Tim K.; Markhvida, Igor; Zeng, Haishan; Doronin, Alexander; Meglinski, Igor

2014-03-01

The incidence of the skin melanoma, the most commonly fatal form of skin cancer, is increasing faster than any other potentially preventable cancer. Clinical practice is currently hampered by the lack of the ability to rapidly screen the functional and morphological properties of tissues. In our previous study we show that the quantification of scattered laser light polarization provides a useful metrics for diagnostics of the malignant melanoma. In this study we exploit whether the image speckle could improve skin cancer diagnostic in comparison with the previously used free-space speckle. The study includes skin phantom measurements and computer modeling. To characterize the depolarization of light we measure the spatial distribution of speckle patterns and analyse their depolarization ratio taken into account radial symmetry. We examine the dependences of depolarization ratio vs. roughness for phantoms which optical properties are of the order of skin lesions. We demonstrate that the variation in bulk optical properties initiates the assessable changes in the depolarization ratio. We show that image speckle differentiates phantoms significantly better than free-space speckle. The results of experimental measurements are compared with the results of Monte Carlo simulation.

Intrinsic speckle noise in in-line particle holography due to polydisperse and continuous particle sizes

NASA Astrophysics Data System (ADS)

Edwards, Philip J.; Hobson, Peter R.; Rodgers, G. J.

2000-08-01

In-line particle holography is subject to image deterioration due to intrinsic speckle noise. The resulting reduction in the signal to noise ratio (SNR) of the replayed image can become critical for applications such as holographic particle velocimetry (HPV) and 3D visualisation of marine plankton. Work has been done to extend the mono-disperse model relevant to HPV to include poly-disperse particle fields appropriate for the visualisation of marine plankton. Continuous and discrete particle fields are both considered. It is found that random walk statistics still apply for the poly-disperse case. The speckle field is simply the summation of the individual speckle patters due to each scatter size. Therefor the characteristic speckle parameter (which encompasses particle diameter, concentration and sample depth) is alos just the summation of the individual speckle parameters. This reduces the SNR calculation to the same form as for the mono-disperse case. For the continuous situation three distributions, power, exponential and Gaussian are discussed with the resulting SNR calcuated. The work presented here was performed as part of the Holomar project to produce a working underwater holographic camera for recording plankton.

Changes in speckle patterns induced by load application onto an optical fiber and its possible application for sensing purpose

NASA Astrophysics Data System (ADS)

Hasegawa, Makoto; Okumura, Jyun-ya; Hyuga, Akio

2015-08-01

Speckle patterns to be observed in an output light spot from an optical fiber are known to be changed due to external disturbances applied onto the optical fiber. In order to investigate possibilities of utilizing such changes in speckle patterns for sensing application, a certain load was applied onto a jacket-covered communication-grade multi-mode glass optical fiber through which laser beams emitted from a laser diode were propagating, and observed changes in speckle patterns in the output light spot from the optical fiber were investigated both as image data via a CCD camera and as an output voltage from a photovoltaic panel irradiated with the output light spot. The load was applied via a load application mechanism in which several ridges were provided onto opposite flat plates and a certain number of weights were placed there so that corrugated bending of the optical fiber was intentionally induced via load application due to the ridges. The obtained results showed that the number of speckles in the observed pattern in the output light spot as well as the output voltage from the photovoltaic panel irradiated with the output light spot showed decreases upon load application with relatively satisfactory repeatability. When the load was reduced, i.e., the weights were removed, the number of speckles then showed recovery. These results indicate there is a certain possibility of utilizing changes in speckle patterns for sensing of load application onto the optical fiber.

Speckle noise reduction in SAR images ship detection

NASA Astrophysics Data System (ADS)

Yuan, Ji; Wu, Bin; Yuan, Yuan; Huang, Qingqing; Chen, Jingbo; Ren, Lin

2012-09-01

At present, there are two types of method to detect ships in SAR images. One is a direct detection type, detecting ships directly. The other is an indirect detection type. That is, it firstly detects ship wakes, and then seeks ships around wakes. The two types all effect by speckle noise. In order to improve the accuracy of ship detection and get accurate ship and ship wakes parameters, such as ship length, ship width, ship area, the angle of ship wakes and ship outline from SAR images, it is extremely necessary to remove speckle noise in SAR images before data used in various SAR images ship detection. The use of speckle noise reduction filter depends on the specification for a particular application. Some common filters are widely used in speckle noise reduction, such as the mean filter, the median filter, the lee filter, the enhanced lee filter, the Kuan filter, the frost filter, the enhanced frost filter and gamma filter, but these filters represent some disadvantages in SAR image ship detection because of the various types of ship. Therefore, a mathematical function known as the wavelet transform and multi-resolution analysis were used to localize an SAR ocean image into different frequency components or useful subbands, and effectively reduce the speckle in the subbands according to the local statistics within the bands. Finally, the analysis of the statistical results are presented, which demonstrates the advantages and disadvantages of using wavelet shrinkage techniques over standard speckle filters.

Restore McComas Watershed; Meadow Creek Watershed, 2002-2003 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McRoberts, Heidi

2004-01-01

The Nez Perce Tribe Department of Fisheries Resource Management, Watershed Division approaches watershed restoration with a ridge-top to ridge-top approach. Watershed restoration projects within the Meadow Creek watershed are coordinated with the Nez Perce National Forest. The Nez Perce Tribe began watershed restoration projects within the Meadow Creek watershed of the South Fork Clearwater River in 1996. Progress has been made in restoring the watershed by excluding cattle from critical riparian areas through fencing. During years 2000-2003, trees were planted in riparian areas within the meadow and its tributaries. Culverts have been prioritized for replacement to accommodate fish passage throughoutmore » the watershed. Designs for replacement are being coordinated with the Nez Perce National Forest. Twenty miles of road were contracted for decommissioning. Tribal crews completed maintenance to the previously built fence.« less

Light-intensity grazing improves alpine meadow productivity and adaption to climate change on the Tibetan Plateau

PubMed Central

Zhang, Tao; Zhang, Yangjian; Xu, Mingjie; Zhu, Juntao; Wimberly, Michael C.; Yu, Guirui; Niu, Shuli; Xi, Yi; Zhang, Xianzhou; Wang, Jingsheng

2015-01-01

To explore grazing effects on carbon fluxes in alpine meadow ecosystems, we used a paired eddy-covariance (EC) system to measure carbon fluxes in adjacent fenced (FM) and grazed (GM) meadows on the Tibetan plateau. Gross primary productivity (GPP) and ecosystem respiration (Re) were greater at GM than FM for the first two years of fencing. In the third year, the productivity at FM increased to a level similar to the GM site. The higher productivity at GM was mainly caused by its higher photosynthetic capacity. Grazing exclusion did not increase carbon sequestration capacity for this alpine grassland system. The higher optimal photosynthetic temperature and the weakened ecosystem response to climatic factors at GM may help to facilitate the adaption of alpine meadow ecosystems to changing climate. PMID:26515954

Extensive contemporary pollen-mediated gene flow in two herb species, Ranunculus bulbosus and Trifolium montanum, along an altitudinal gradient in a meadow landscape

PubMed Central

Matter, Philippe; Kettle, Chris J.; Ghazoul, Jaboury; Pluess, Andrea R.

2013-01-01

Background and Aims Genetic connectivity between plant populations allows for exchange and dispersal of adaptive genes, which can facilitate plant population persistence particularly in rapidly changing environments. Methods Patterns of historic gene flow, flowering phenology and contemporary pollen flow were investigated in two common herbs, Ranunculus bulbosus and Trifolium montanum, along an altitudinal gradient of 1200–1800 m a.s.l. over a distance of 1 km among five alpine meadows in Switzerland. Key Results Historic gene flow was extensive, as revealed by Fst values of 0·01 and 0·007 in R. bulbosus and T. montanum, respectively, by similar levels of allelic richness among meadows and by the grouping of all individuals into one genetic cluster. Our data suggest contemporary pollen flow is not limited across altitudes in either species but is more pronounced in T. montanum, as indicated by the differential decay of among-sibships correlated paternity with increasing spatial distance. Flowering phenology among meadows was not a barrier to pollen flow in T. montanum, as the large overlap between meadow pairs was consistent with the extensive pollen flow. The smaller flowering overlap among R. bulbosus meadows might explain the slightly more limited pollen flow detected. Conclusions High levels of pollen flow among altitudes in both R. bulbosus and T. montanum should facilitate exchange of genes which may enhance adaptive responses to rapid climate change. PMID:23408831

How sedge meadow soils, microtopography, and vegetation respond to sedimentation

USGS Publications Warehouse

Werner, K.J.; Zedler, Joy B.

2002-01-01

The expansion of urban and agricultural activities in watersheds of the Midwestern USA facilitates the conversion of species-rich sedge meadows to stands of Phalaris arundinacea and Typha spp. We document the role of sediment accumulation in this process based on field surveys of three sedge meadows dominated by Carex stricta, their adjacent Phalaris or Typha stands, and transitions from Carex to these invasive species. The complex microtopography of Carex tussocks facilitates the occurrence of other native species. Tussock surface area and species richness were positively correlated in two marshes (r2 = 0.57 and 0.41); on average, a 33-cm-tall tussock supported 7.6 species. Phalaris also grew in tussock form in wetter areas but did not support native species. We found an average of 10.5 Carex tussocks per 10-m transect, but only 3.5 Phalaris tussocks. Microtopographic relief, determined with a high-precision GPS, measured 11% greater in Carex meadows than Phalaris stands. Inflowing sediments reduced microtopographic variation and surface area for native species. We calculated a loss of one species per 1000 cm2 of lost tussock surface area, and loss of 1.2 species for every 10-cm addition of sediment over the sedge meadow surface. Alluvium overlying the sedge meadow soil had a smaller proportion of organic matter content and higher dry bulk density than the buried histic materials. We conclude that sedimentation contributes to the loss of native species in remnant wetlands. ?? 2002, The Society of Wetland Scientists.

Using of methods of speckle optics for Chlamydia trachomatis typing

NASA Astrophysics Data System (ADS)

Ulyanov, Sergey S.; Zaytsev, Sergey S.; Ulianova, Onega V.; Saltykov, Yury V.; Feodorova, Valentina A.

2017-03-01

Specific method of transformation of nucleotide of gene into speckle pattern is suggested. Reference speckle pattern of omp1 gene of typical wild strains of Chlamydia trachomatis of genovars D, E, F, G, J and K and Chlamydia psittaci as well is generated. Perspectives of proposed technique in the gene identification and detection of natural genetic mutations as single nucleotide polymorphism (SNP) are demonstrated.

Multiresolution edge detection using enhanced fuzzy c-means clustering for ultrasound image speckle reduction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsantis, Stavros; Spiliopoulos, Stavros; Karnabatidis, Dimitrios

Purpose: Speckle suppression in ultrasound (US) images of various anatomic structures via a novel speckle noise reduction algorithm. Methods: The proposed algorithm employs an enhanced fuzzy c-means (EFCM) clustering and multiresolution wavelet analysis to distinguish edges from speckle noise in US images. The edge detection procedure involves a coarse-to-fine strategy with spatial and interscale constraints so as to classify wavelet local maxima distribution at different frequency bands. As an outcome, an edge map across scales is derived whereas the wavelet coefficients that correspond to speckle are suppressed in the inverse wavelet transform acquiring the denoised US image. Results: A totalmore » of 34 thyroid, liver, and breast US examinations were performed on a Logiq 9 US system. Each of these images was subjected to the proposed EFCM algorithm and, for comparison, to commercial speckle reduction imaging (SRI) software and another well-known denoising approach, Pizurica's method. The quantification of the speckle suppression performance in the selected set of US images was carried out via Speckle Suppression Index (SSI) with results of 0.61, 0.71, and 0.73 for EFCM, SRI, and Pizurica's methods, respectively. Peak signal-to-noise ratios of 35.12, 33.95, and 29.78 and edge preservation indices of 0.94, 0.93, and 0.86 were found for the EFCM, SIR, and Pizurica's method, respectively, demonstrating that the proposed method achieves superior speckle reduction performance and edge preservation properties. Based on two independent radiologists’ qualitative evaluation the proposed method significantly improved image characteristics over standard baseline B mode images, and those processed with the Pizurica's method. Furthermore, it yielded results similar to those for SRI for breast and thyroid images significantly better results than SRI for liver imaging, thus improving diagnostic accuracy in both superficial and in-depth structures. Conclusions: A new wavelet-based EFCM clustering model was introduced toward noise reduction and detail preservation. The proposed method improves the overall US image quality, which in turn could affect the decision-making on whether additional imaging and/or intervention is needed.« less

Assessment of Left Ventricular Myocardial Viability by 3-Dimensional Speckle-Tracking Echocardiography in Patients With Myocardial Infarction.

PubMed

Ran, Hong; Zhang, Ping-Yang; Zhang, You-Xiang; Zhang, Jian-Xin; Wu, Wen-Fang; Dong, Jing; Ma, Xiao-Wu

2016-08-01

To determine whether 3-dimensional (3D) speckle-tracking echocardiography could provide a new way to assess myocardial viability in patients with myocardial infarction (MI). Forty-five patients with MI underwent routine echocardiography, 2-dimensional (2D) speckle-tracking echocardiography, and 3D speckle-tracking echocardiography. Radionuclide myocardial perfusion/metabolic imaging was used as a reference standard to define viable and nonviable myocardia. Among 720 myocardial segments in 45 patients, 368 showed abnormal motion on routine echocardiography; 204 of 368 were categorized as viable on single-photon emission computed tomography/positron emission tomography (SPECT/PET), whereas 164 were defined as nonviable; 300 normal segments on SPECT/PET among 352 segments without abnormal motion on routine echocardiography were categorized as a control group. The radial, longitudinal, 3D, and area strain on 3D speckle-tracking echocardiography had significant differences between control and nonviable groups (P < .001), whereas none of the parameters had significant differences between control and viable groups. There were no significant differences in circumferential, radial, and longitudinal peak systolic strain from 2D speckle-tracking echocardiography between viable and nonviable groups. Although there was no significant difference in circumferential strain between the groups, radial and longitudinal strain from 3D speckle-tracking echocardiography decreased significantly in the nonviable group. Moreover, 3D and area strain values were lower in the nonviable segments than the viable segments. By receiver operating characteristic analysis, radial strain from 3D speckle-tracking echocardiography with a cutoff of 11.1% had sensitivity of 95.1% and specificity of 53.4% for viable segments; longitudinal strain with a cutoff of 14.3% had sensitivity of 65.2% and specificity of 65.7%; 3D strain with a cutoff of 17.4% had sensitivity of 70.6% and specificity of 77.2%; and area strain with a cutoff of 23.2% had sensitivity of 91.5% and specificity of 82.8%. Three-dimensional speckle-tracking echocardiography might have potential for detection of myocardial viability in patients with cardiac dysfunction due to MI.

Multiresolution edge detection using enhanced fuzzy c-means clustering for ultrasound image speckle reduction.

PubMed

Tsantis, Stavros; Spiliopoulos, Stavros; Skouroliakou, Aikaterini; Karnabatidis, Dimitrios; Hazle, John D; Kagadis, George C

2014-07-01

Speckle suppression in ultrasound (US) images of various anatomic structures via a novel speckle noise reduction algorithm. The proposed algorithm employs an enhanced fuzzy c-means (EFCM) clustering and multiresolution wavelet analysis to distinguish edges from speckle noise in US images. The edge detection procedure involves a coarse-to-fine strategy with spatial and interscale constraints so as to classify wavelet local maxima distribution at different frequency bands. As an outcome, an edge map across scales is derived whereas the wavelet coefficients that correspond to speckle are suppressed in the inverse wavelet transform acquiring the denoised US image. A total of 34 thyroid, liver, and breast US examinations were performed on a Logiq 9 US system. Each of these images was subjected to the proposed EFCM algorithm and, for comparison, to commercial speckle reduction imaging (SRI) software and another well-known denoising approach, Pizurica's method. The quantification of the speckle suppression performance in the selected set of US images was carried out via Speckle Suppression Index (SSI) with results of 0.61, 0.71, and 0.73 for EFCM, SRI, and Pizurica's methods, respectively. Peak signal-to-noise ratios of 35.12, 33.95, and 29.78 and edge preservation indices of 0.94, 0.93, and 0.86 were found for the EFCM, SIR, and Pizurica's method, respectively, demonstrating that the proposed method achieves superior speckle reduction performance and edge preservation properties. Based on two independent radiologists' qualitative evaluation the proposed method significantly improved image characteristics over standard baseline B mode images, and those processed with the Pizurica's method. Furthermore, it yielded results similar to those for SRI for breast and thyroid images significantly better results than SRI for liver imaging, thus improving diagnostic accuracy in both superficial and in-depth structures. A new wavelet-based EFCM clustering model was introduced toward noise reduction and detail preservation. The proposed method improves the overall US image quality, which in turn could affect the decision-making on whether additional imaging and/or intervention is needed.

Restoration potential of sedge meadows in hand-cultivated soybean fields in northeastern China

USGS Publications Warehouse

Wang, Guodong; Middleton, Beth; Jiang, Ming

2013-01-01

Sedge meadows can be difficult to restore from farmed fields if key structural dominants are missing from propagule banks. In hand-cultivated soybean fields in northeastern China, we asked if tussock-forming Carex and other wetland species were present as seed or asexual propagules. In the Sanjiang Plain, China, we compared the seed banks, vegetative propagules (below-ground) and standing vegetation of natural and restored sedge meadows, and hand-cultivated soybean fields in drained and flooded conditions. We found that important wetland species survived cultivation as seeds for some time (e.g. Calamogrostis angustifolia and Potamogeton crispus) and as field weeds (e.g. C. angustifolia and Phragmites australis). Key structural species were missing in these fields, for example, Carex meyeriana. We also observed that sedge meadows restored without planting or seeding lacked tussock-forming sedges. The structure of the seed bank was related to experimental water regime, and field environments of tussock height, thatch depth, and presence of burning as based on Nonmetric Multidimensional Scaling analysis. To re-establish the structure imposed by tussock sedges, specific technologies might be developed to encourage the development of tussocks in restored sedge meadows.

24. STREAM AND THREE MEADOW FALLS, LOOKING NORTHWEST Photocopy of ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

24. STREAM AND THREE MEADOW FALLS, LOOKING NORTHWEST Photocopy of photograph, 1930s National Park Service, National Capital Region files - Dumbarton Oaks Park, Thirty-second & R Streets Northwest, Washington, District of Columbia, DC

RELATIONSHIPS AMONG GEOMORPHOLOGY, HYDROLOGY, AND VEGETATION IN RIPARIAN MEADOWS: RESTORATION IMPLICATIONS

EPA Science Inventory

Vegetation patterns and dynamics within riparian corridors are controlled largely by geomorphic position, substrate characteristics and hydrologic regimes. Understanding management and restoration options for riparian meadow complexes exhibiting stream incision requires knowledge...

75 FR 63505 - Crane Meadows National Wildlife Refuge, Morrison County, MN

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-15

... including oak savanna, sand prairie, and sedge meadow, it also provides key habitat for local and migratory... for quality fishing experiences will be evaluated as new lands are acquired. Background The National...

Computer vision elastography: speckle adaptive motion estimation for elastography using ultrasound sequences.

PubMed

Revell, James; Mirmehdi, Majid; McNally, Donal

2005-06-01

We present the development and validation of an image based speckle tracking methodology, for determining temporal two-dimensional (2-D) axial and lateral displacement and strain fields from ultrasound video streams. We refine a multiple scale region matching approach incorporating novel solutions to known speckle tracking problems. Key contributions include automatic similarity measure selection to adapt to varying speckle density, quantifying trajectory fields, and spatiotemporal elastograms. Results are validated using tissue mimicking phantoms and in vitro data, before applying them to in vivo musculoskeletal ultrasound sequences. The method presented has the potential to improve clinical knowledge of tendon pathology from carpel tunnel syndrome, inflammation from implants, sport injuries, and many others.

Three-dimensional displacement measurement by fringe projection and speckle photography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barrientos, B.; Garcia-Marquez, J.; Cerca, M.

2008-04-15

3D displacement fields are measured by the combination of two optical methods, fringe projection and speckle photography. The use of only one camera recording the necessary information implies that no calibration procedures are necessary as is the case in techniques based on stereoscopy. The out-of-plane displacement is measured by fringe projection whereas speckle photography yields the 2-D in-plane component. To show the feasibility of the technique, we analyze a detailed morphological spatio-temporal evolution of a model of the Earth's crust while subjected to compression forces. The results show that the combination of fringe projection and speckle photography is well suitedmore » for this type of studies.« less

DARKNESS: A Microwave Kinetic Inductance Detector Integral Field Spectrograph for High-contrast Astronomy

NASA Astrophysics Data System (ADS)

Meeker, Seth R.; Mazin, Benjamin A.; Walter, Alex B.; Strader, Paschal; Fruitwala, Neelay; Bockstiegel, Clint; Szypryt, Paul; Ulbricht, Gerhard; Coiffard, Grégoire; Bumble, Bruce; Cancelo, Gustavo; Zmuda, Ted; Treptow, Ken; Wilcer, Neal; Collura, Giulia; Dodkins, Rupert; Lipartito, Isabel; Zobrist, Nicholas; Bottom, Michael; Shelton, J. Chris; Mawet, Dimitri; van Eyken, Julian C.; Vasisht, Gautam; Serabyn, Eugene

2018-06-01

We present DARKNESS (the DARK-speckle Near-infrared Energy-resolving Superconducting Spectrophotometer), the first of several planned integral field spectrographs to use optical/near-infrared Microwave Kinetic Inductance Detectors (MKIDs) for high-contrast imaging. The photon counting and simultaneous low-resolution spectroscopy provided by MKIDs will enable real-time speckle control techniques and post-processing speckle suppression at frame rates capable of resolving the atmospheric speckles that currently limit high-contrast imaging from the ground. DARKNESS is now operational behind the PALM-3000 extreme adaptive optics system and the Stellar Double Coronagraph at Palomar Observatory. Here, we describe the motivation, design, and characterization of the instrument, early on-sky results, and future prospects.

Statistical Analysis of speckle noise reduction techniques for echocardiographic Images

NASA Astrophysics Data System (ADS)

Saini, Kalpana; Dewal, M. L.; Rohit, Manojkumar

2011-12-01

Echocardiography is the safe, easy and fast technology for diagnosing the cardiac diseases. As in other ultrasound images these images also contain speckle noise. In some cases this speckle noise is useful such as in motion detection. But in general noise removal is required for better analysis of the image and proper diagnosis. Different Adaptive and anisotropic filters are included for statistical analysis. Statistical parameters such as Signal-to-Noise Ratio (SNR), Peak Signal-to-Noise Ratio (PSNR), and Root Mean Square Error (RMSE) calculated for performance measurement. One more important aspect that there may be blurring during speckle noise removal. So it is prefered that filter should be able to enhance edges during noise removal.

Speckle interferometry with temporal phase evaluation for measuring large-object deformation.

PubMed

Joenathan, C; Franze, B; Haible, P; Tiziani, H J

1998-05-01

We propose a new method for measuring large-object deformations byusing temporal evolution of the speckles in speckleinterferometry. The principle of the method is that by deformingthe object continuously, one obtains fluctuations in the intensity ofthe speckle. A large number of frames of the object motion arecollected to be analyzed later. The phase data for whole-objectdeformation are then retrieved by inverse Fourier transformation of afiltered spectrum obtained by Fourier transformation of thesignal. With this method one is capable of measuring deformationsof more than 100 mum, which is not possible using conventionalelectronic speckle pattern interferometry. We discuss theunderlying principle of the method and the results of theexperiments. Some nondestructive testing results are alsopresented.

Motion detection using extended fractional Fourier transform and digital speckle photography.

PubMed

Bhaduri, Basanta; Tay, C J; Quan, C; Sheppard, Colin J R

2010-05-24

Digital speckle photography is a useful tool for measuring the motion of optically rough surfaces from the speckle shift that takes place at the recording plane. A simple correlation based digital speckle photographic system has been proposed that implements two simultaneous optical extended fractional Fourier transforms (EFRTs) of different orders using only a single lens and detector to simultaneously detect both the magnitude and direction of translation and tilt by capturing only two frames: one before and another after the object motion. The dynamic range and sensitivity of the measurement can be varied readily by altering the position of the mirror/s used in the optical setup. Theoretical analysis and experiment results are presented.

Measurements of 427 Double Stars With Speckle Interferometry: The Winter/Spring 2017 Observing Program at Brilliant Sky Observatory, Part 1

NASA Astrophysics Data System (ADS)

Harshaw, Richard

2018-04-01

In the winter and spring of 2017, an aggressive observing program of measuring close double stars with speckle interferometry and CCD imaging was undertaken at Brilliant Sky Observatory, my observing site in Cave Creek, Arizona. A total of 596 stars were observed, 8 of which were rejected for various reasons, leaving 588 pairs. Of these, 427 were observed and measured with speckle interferometry, while the remaining 161 were measured with a CCD. This paper reports the results of the observations of the 427 speckle cases. A separate paper in this issue will report the CCD measurements of the 161 other pairs.

Group-size-mediated habitat selection and group fusion-fission dynamics of bison under predation risk.

PubMed

Fortin, Daniel; Fortin, Marie-Eve; Beyer, Hawthorne L; Duchesne, Thierry; Courant, Sabrina; Dancose, Karine

2009-09-01

For gregarious animals the cost-benefit trade-offs that drive habitat selection may vary dynamically with group size, which plays an important role in foraging and predator avoidance strategies. We examined how habitat selection by bison (Bison bison) varied as a function of group size and interpreted these patterns by testing whether habitat selection was more strongly driven by the competing demands of forage intake vs. predator avoidance behavior. We developed an analytical framework that integrated group size into resource selection functions (RSFs). These group-size-dependent RSFs were based on a matched case-control design and were estimated using conditional logistic regression (mixed and population-averaged models). Fitting RSF models to bison revealed that bison groups responded to multiple aspects of landscape heterogeneity and that selection varied seasonally and as a function of group size. For example, roads were selected in summer, but not in winter. Bison groups avoided areas of high snow water equivalent in winter. They selected areas composed of a large proportion of meadow area within a 700-m radius, and within those areas, bison selected meadows. Importantly, the strength of selection for meadows varied as a function of group size, with stronger selection being observed in larger groups. Hence the bison-habitat relationship depended in part on the dynamics of group formation and division. Group formation was most likely in meadows. In contrast, risk of group fission increased when bison moved into the forest and was higher during the time of day when movements are generally longer and more variable among individuals. We also found that stronger selection for meadows by large rather than small bison groups was caused by longer residence time in individual meadows by larger groups and that departure from meadows appears unlikely to result from a depression in food intake rate. These group-size-dependent patterns were consistent with the hypothesis that avoidance of predation risk is the strongest driver of habitat selection.

Bioavailable soil phosphorus decreases with increasing elevation in a subarctic tundra landscape.

PubMed

Vincent, Andrea G; Sundqvist, Maja K; Wardle, David A; Giesler, Reiner

2014-01-01

Phosphorus (P) is an important macronutrient in arctic and subarctic tundra and its bioavailability is regulated by the mineralization of organic P. Temperature is likely to be an important control on P bioavailability, although effects may differ across contrasting plant communities with different soil properties. We used an elevational gradient in northern Sweden that included both heath and meadow vegetation types at all elevations to study the effects of temperature, soil P sorption capacity and oxalate-extractable aluminium (Alox) and iron (Feox) on the concentration of different soil P fractions. We hypothesized that the concentration of labile P fractions would decrease with increasing elevation (and thus declining temperature), but would be lower in meadow than in heath, given that N to P ratios in meadow foliage are higher. As expected, labile P in the form of Resin-P declined sharply with elevation for both vegetation types. Meadow soils did not have lower concentrations of Resin-P than heath soils, but they did have 2-fold and 1.5-fold higher concentrations of NaOH-extractable organic P and Residual P, respectively. Further, meadow soils had 3-fold higher concentrations of Alox + Feox and a 20% higher P sorption index than did heath soils. Additionally, Resin-P expressed as a proportion of total soil P for the meadow was on average half that in the heath. Declining Resin-P concentrations with elevation were best explained by an associated 2.5-3.0 °C decline in temperature. In contrast, the lower P availability in meadow relative to heath soils may be associated with impaired organic P mineralization, as indicated by a higher accumulation of organic P and P sorption capacity. Our results indicate that predicted temperature increases in the arctic over the next century may influence P availability and biogeochemistry, with consequences for key ecosystem processes limited by P, such as primary productivity.

Bioavailable Soil Phosphorus Decreases with Increasing Elevation in a Subarctic Tundra Landscape

PubMed Central

Vincent, Andrea G.; Sundqvist, Maja K.; Wardle, David A.; Giesler, Reiner

2014-01-01

Phosphorus (P) is an important macronutrient in arctic and subarctic tundra and its bioavailability is regulated by the mineralization of organic P. Temperature is likely to be an important control on P bioavailability, although effects may differ across contrasting plant communities with different soil properties. We used an elevational gradient in northern Sweden that included both heath and meadow vegetation types at all elevations to study the effects of temperature, soil P sorption capacity and oxalate-extractable aluminium (Alox) and iron (Feox) on the concentration of different soil P fractions. We hypothesized that the concentration of labile P fractions would decrease with increasing elevation (and thus declining temperature), but would be lower in meadow than in heath, given that N to P ratios in meadow foliage are higher. As expected, labile P in the form of Resin-P declined sharply with elevation for both vegetation types. Meadow soils did not have lower concentrations of Resin-P than heath soils, but they did have 2–fold and 1.5–fold higher concentrations of NaOH-extractable organic P and Residual P, respectively. Further, meadow soils had 3-fold higher concentrations of Alox + Feox and a 20% higher P sorption index than did heath soils. Additionally, Resin-P expressed as a proportion of total soil P for the meadow was on average half that in the heath. Declining Resin-P concentrations with elevation were best explained by an associated 2.5–3.0°C decline in temperature. In contrast, the lower P availability in meadow relative to heath soils may be associated with impaired organic P mineralization, as indicated by a higher accumulation of organic P and P sorption capacity. Our results indicate that predicted temperature increases in the arctic over the next century may influence P availability and biogeochemistry, with consequences for key ecosystem processes limited by P, such as primary productivity. PMID:24676035

Geologic characteristics and movement of the Meadow Creek landslide, part of the Coal Hill landslide complex, western Kane County, Utah

USGS Publications Warehouse

Ashland, Francis X.; McDonald, Greg N.; Carney, Stephanie M.; Tabet, David E.; Johnson, Cari L.

2010-01-01

The Meadow Creek landslide, part of the Coal Hill landslide complex in western Kane County, Utah, is about 1.7 miles (2.7 km) wide and 1.3 miles (2.1 km) long and contains six smaller historical slides. The upper part of the Meadow Creek landslide is gently sloping and consists of displaced and back-rotated blocks of Cretaceous Dakota and Cedar Mountain Formations that form northeast- to locally east-trending ridges that are separated by sediment-filled half-grabens. The lower part of the landslide is gently to moderately sloping, locally incised, and consists of heterogeneous debris that overrides the Jurassic Carmel Formation near Meadow Creek. Monitoring using a survey-grade Global Positioning System (GPS) instrument detected movement of the southern part of the Meadow Creek landslide between October 2005 and October 2008, including movement of two of the historical slides-landslides 1 and 2. The most movement during the measurement period occurred within the limits of persistently moving landslide 1 and ranged from about 24 to 64 inches (61-163 cm). Movement of the abutting southern part of the Meadow Creek landslide ranged from approximately 6 to 10 inches (15-25 cm). State Route 9 crosses over approximately a mile (1.6 km) of the southern part of the Meadow Creek landslide, including landslide 1. The highway and its predecessor (State Route 15) have been periodically displaced and damaged by persistent movement of landslide 1. Most of the landslide characteristics, particularly its size, probable depth, and the inferred weak strength and low permeability of clay-rich gouge derived from the Dakota and Cedar Mountain Formations, are adverse to and pose significant challenges to landslide stabilization. Secondary hazards include piping-induced sinkholes along scarps and ground cracks, and debris flows and rock falls from the main-scarp escarpment.

The POKEMON Speckle Survey of Nearby M-Dwarfs

NASA Astrophysics Data System (ADS)

van Belle, Gerard; von Braun, Kaspar; Horch, Elliott; Clark, Catherine; DSSI Speckle Team

2018-01-01

The POKEMON (Pervasive Overview of Kompanions of Every M-dwarf in Our Neighborhood) survey of nearby M-dwarfs intends to inspect, at diffraction-limited resolution, every low-mass star out to 15pc, along with selected additional objects to 25pc. The primary emphasis of the survey is detection of low-mass companions to these M-dwarfs for refinement of the low-mass star multiplicity rate. The resultant catalog of M-dwarf companions will also guide immediate refinement of transit planet detection results from surveys such as TESS. POKEMON is using Lowell Observatory's 4.3-m Discovery Channel Telescope (DCT) with the Differential Speckle Survey Instrument (DSSI) speckle camera, along with the NN-Explore Exoplanet Stellar Speckle Imager (NESSI) speckle imager on 3.5-m WIYN; the survey takes advantage of the extremely rapid observing cadence rates possible with WIYN and (especially) DCT. The current status and preliminary results from the first 20+ nights of observing will be presented. Gotta observe them all!

Measurement potential of laser speckle velocimetry

NASA Technical Reports Server (NTRS)

Adrian, R. J.

1982-01-01

Laser speckle velocimetry, the measurement of fluid velocity by measuring the translation of speckle pattern or individual particles that are moving with the fluid, is described. The measurement is accomplished by illuminating the fluid with consecutive pulses of Laser Light and recording the images of the particles or the speckles on a double exposed photographic plate. The plate contains flow information throughout the image plane so that a single double exposure may provide data at hundreds or thousands of points in the illuminated region of the fluid. Conventional interrogation of the specklegram involves illuminating the plate to form Young's fringes, whose spacing is inversely proportional to the speckle separation. Subsequently the fringes are digitized and analyzed in a computer to determine their frequency and orientation, yielding the velocity magnitude and orientation. The Young's fringe technique is equivalent to performing a 2-D spatial correlation of the double exposed specklegram intensity pattern, and this observation suggests that correlation should be considered as an alternative processing method. The principle of the correlation technique is examined.

Software phantom with realistic speckle modeling for validation of image analysis methods in echocardiography

NASA Astrophysics Data System (ADS)

Law, Yuen C.; Tenbrinck, Daniel; Jiang, Xiaoyi; Kuhlen, Torsten

2014-03-01

Computer-assisted processing and interpretation of medical ultrasound images is one of the most challenging tasks within image analysis. Physical phenomena in ultrasonographic images, e.g., the characteristic speckle noise and shadowing effects, make the majority of standard methods from image analysis non optimal. Furthermore, validation of adapted computer vision methods proves to be difficult due to missing ground truth information. There is no widely accepted software phantom in the community and existing software phantoms are not exible enough to support the use of specific speckle models for different tissue types, e.g., muscle and fat tissue. In this work we propose an anatomical software phantom with a realistic speckle pattern simulation to _ll this gap and provide a exible tool for validation purposes in medical ultrasound image analysis. We discuss the generation of speckle patterns and perform statistical analysis of the simulated textures to obtain quantitative measures of the realism and accuracy regarding the resulting textures.

Assessment of corneal properties based on statistical modeling of OCT speckle.

PubMed

Jesus, Danilo A; Iskander, D Robert

2017-01-01

A new approach to assess the properties of the corneal micro-structure in vivo based on the statistical modeling of speckle obtained from Optical Coherence Tomography (OCT) is presented. A number of statistical models were proposed to fit the corneal speckle data obtained from OCT raw image. Short-term changes in corneal properties were studied by inducing corneal swelling whereas age-related changes were observed analyzing data of sixty-five subjects aged between twenty-four and seventy-three years. Generalized Gamma distribution has shown to be the best model, in terms of the Akaike's Information Criterion, to fit the OCT corneal speckle. Its parameters have shown statistically significant differences (Kruskal-Wallis, p < 0.001) for short and age-related corneal changes. In addition, it was observed that age-related changes influence the corneal biomechanical behaviour when corneal swelling is induced. This study shows that Generalized Gamma distribution can be utilized to modeling corneal speckle in OCT in vivo providing complementary quantified information where micro-structure of corneal tissue is of essence.

Speckle imaging with the MAMA detector: Preliminary results

NASA Technical Reports Server (NTRS)

Horch, E.; Heanue, J. F.; Morgan, J. S.; Timothy, J. G.

1994-01-01

We report on the first successful speckle imaging studies using the Stanford University speckle interferometry system, an instrument that uses a multianode microchannel array (MAMA) detector as the imaging device. The method of producing high-resolution images is based on the analysis of so-called 'near-axis' bispectral subplanes and follows the work of Lohmann et al. (1983). In order to improve the signal-to-noise ratio in the bispectrum, the frame-oversampling technique of Nakajima et al. (1989) is also employed. We present speckle imaging results of binary stars and other objects from V magnitude 5.5 to 11, and the quality of these images is studied. While the Stanford system is capable of good speckle imaging results, it is limited by the overall quantum efficiency of the current MAMA detector (which is due to the response of the photocathode at visible wavelengths and other detector properties) and by channel saturation of the microchannel plate. Both affect the signal-to-noise ratio of the power spectrum and bispectrum.

Speckle noise attenuation in optical coherence tomography by compounding images acquired at different positions of the sample

NASA Astrophysics Data System (ADS)

Popescu, Dan P.; Hewko, Mark D.; Sowa, Michael G.

2007-01-01

This study demonstrates a simple method for attenuating the speckle noise generated by coherent multiple-scattered photons in optical-coherence tomography images. The method could be included among the space-diversity techniques used for speckle reduction. It relies on displacing the sample along a weakly focused beam in the sample arm of the interferometer, acquiring a coherent image for each sample position and adding the individual images to form a compounded image. It is proven that the compounded image displays a reduction in the speckle noise generated by multiple scattered photons and an enhancement in the intensity signal caused by single-backscattered photons. To evaluate its potential biomedical applications, the method is used to investigate in vitro a caries lesion affecting the enamel layer of a wisdom tooth. Because of the uncorrelated nature of the speckle noise the compounded image provides a better mapping of the lesion compared to a single (coherent) image.

Evaluation and correction for optical scattering variations in laser speckle rheology of biological fluids.

PubMed

Hajjarian, Zeinab; Nadkarni, Seemantini K

2013-01-01

Biological fluids fulfill key functionalities such as hydrating, protecting, and nourishing cells and tissues in various organ systems. They are capable of these versatile tasks owing to their distinct structural and viscoelastic properties. Characterizing the viscoelastic properties of bio-fluids is of pivotal importance for monitoring the development of certain pathologies as well as engineering synthetic replacements. Laser Speckle Rheology (LSR) is a novel optical technology that enables mechanical evaluation of tissue. In LSR, a coherent laser beam illuminates the tissue and temporal speckle intensity fluctuations are analyzed to evaluate mechanical properties. The rate of temporal speckle fluctuations is, however, influenced by both optical and mechanical properties of tissue. Therefore, in this paper, we develop and validate an approach to estimate and compensate for the contributions of light scattering to speckle dynamics and demonstrate the capability of LSR for the accurate extraction of viscoelastic moduli in phantom samples and biological fluids of varying optical and mechanical properties.

Evaluation and Correction for Optical Scattering Variations in Laser Speckle Rheology of Biological Fluids

PubMed Central

Hajjarian, Zeinab; Nadkarni, Seemantini K.

2013-01-01

Biological fluids fulfill key functionalities such as hydrating, protecting, and nourishing cells and tissues in various organ systems. They are capable of these versatile tasks owing to their distinct structural and viscoelastic properties. Characterizing the viscoelastic properties of bio-fluids is of pivotal importance for monitoring the development of certain pathologies as well as engineering synthetic replacements. Laser Speckle Rheology (LSR) is a novel optical technology that enables mechanical evaluation of tissue. In LSR, a coherent laser beam illuminates the tissue and temporal speckle intensity fluctuations are analyzed to evaluate mechanical properties. The rate of temporal speckle fluctuations is, however, influenced by both optical and mechanical properties of tissue. Therefore, in this paper, we develop and validate an approach to estimate and compensate for the contributions of light scattering to speckle dynamics and demonstrate the capability of LSR for the accurate extraction of viscoelastic moduli in phantom samples and biological fluids of varying optical and mechanical properties. PMID:23705028

Speckle dynamics under ergodicity breaking

NASA Astrophysics Data System (ADS)

Sdobnov, Anton; Bykov, Alexander; Molodij, Guillaume; Kalchenko, Vyacheslav; Jarvinen, Topias; Popov, Alexey; Kordas, Krisztian; Meglinski, Igor

2018-04-01

Laser speckle contrast imaging (LSCI) is a well-known and versatile approach for the non-invasive visualization of flows and microcirculation localized in turbid scattering media, including biological tissues. In most conventional implementations of LSCI the ergodic regime is typically assumed valid. However, most composite turbid scattering media, especially biological tissues, are non-ergodic, containing a mixture of dynamic and static centers of light scattering. In the current study, we examined the speckle contrast in different dynamic conditions with the aim of assessing limitations in the quantitative interpretation of speckle contrast images. Based on a simple phenomenological approach, we introduced a coefficient of speckle dynamics to quantitatively assess the ratio of the dynamic part of a scattering medium to the static one. The introduced coefficient allows one to distinguish real changes in motion from the mere appearance of static components in the field of view. As examples of systems with static/dynamic transitions, thawing and heating of Intralipid samples were studied by the LSCI approach.

Airplane wing deformation and flight flutter detection method by using three-dimensional speckle image correlation technology.

PubMed

Wu, Jun; Yu, Zhijing; Wang, Tao; Zhuge, Jingchang; Ji, Yue; Xue, Bin

2017-06-01

Airplane wing deformation is an important element of aerodynamic characteristics, structure design, and fatigue analysis for aircraft manufacturing, as well as a main test content of certification regarding flutter for airplanes. This paper presents a novel real-time detection method for wing deformation and flight flutter detection by using three-dimensional speckle image correlation technology. Speckle patterns whose positions are determined through the vibration characteristic of the aircraft are coated on the wing; then the speckle patterns are imaged by CCD cameras which are mounted inside the aircraft cabin. In order to reduce the computation, a matching technique based on Geodetic Systems Incorporated coded points combined with the classical epipolar constraint is proposed, and a displacement vector map for the aircraft wing can be obtained through comparing the coordinates of speckle points before and after deformation. Finally, verification experiments containing static and dynamic tests by using an aircraft wing model demonstrate the accuracy and effectiveness of the proposed method.

A meadow site classification for the Sierra Nevada, California

Treesearch

Raymond D. Ratliff

1982-01-01

This report describes 14 meadow site classes derived through techniques of agglomerative cluster analysis. The class names are: Carex rostrata (beaked sedge), Poa (Kentucky bluegrass), Heleocharis/Heleocharis (ephemeral-lake), Hypericum/Polygonum/ Viola (hillside bog), Trifolium/...

22. MEADOW, LOOKING EAST WITH STREAM ARBOR ON RIGHT Photocopy ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

22. MEADOW, LOOKING EAST WITH STREAM ARBOR ON RIGHT Photocopy of photograph, 1930s National Park Service, National Capital Region files - Dumbarton Oaks Park, Thirty-second & R Streets Northwest, Washington, District of Columbia, DC

Carbon sequestration in two alpine soils on the Tibetan Plateau.

PubMed

Tian, Yu-Qiang; Xu, Xing-Liang; Song, Ming-Hua; Zhou, Cai-Ping; Gao, Qiong; Ouyang, Hua

2009-09-01

Soil carbon sequestration was estimated in a conifer forest and an alpine meadow on the Tibetan Plateau using a carbon-14 radioactive label provided by thermonuclear weapon tests (known as bomb-(14)C). Soil organic matter was physically separated into light and heavy fractions. The concentration spike of bomb-(14)C occurred at a soil depth of 4 cm in both the forest soil and the alpine meadow soil. Based on the depth of the bomb-(14)C spike, the carbon sequestration rate was determined to be 38.5 g C/m(2) per year for the forest soil and 27.1 g C/m(2) per year for the alpine meadow soil. Considering that more than 60% of soil organic carbon (SOC) is stored in the heavy fraction and the large area of alpine forests and meadows on the Tibetan Plateau, these alpine ecosystems might partially contribute to "the missing carbon sink".

Dugong dugon feeding in tropical Australian seagrass meadows: implications for conservation planning.

PubMed

Tol, Samantha J; Coles, Rob G; Congdon, Bradley C

2016-01-01

Dugongs (Dugong dugon) are listed as vulnerable to extinction due to rapid population reductions caused in part by loss of seagrass feeding meadows. Understanding dugong feeding behaviour in tropical Australia, where the majority of dugongs live, will assist conservation strategies. We examined whether feeding patterns in intertidal seagrass meadows in tropical north-eastern Australia were related to seagrass biomass, species composition and/or nitrogen content. The total biomass of each seagrass species removed by feeding dugongs was measured and compared to its relative availability. Nitrogen concentrations were also determined for each seagrass species present at the sites. Dugongs consumed seagrass species in proportion to their availability, with biomass being the primary determining factor. Species composition and/or nitrogen content influenced consumption to a lesser degree. Conservation plans focused on protecting high biomass intertidal seagrass meadows are likely to be most effective at ensuring the survival of dugong in tropical north-eastern Australia.

Evapotranspiration Calculations for an Alpine Marsh Meadow Site in Three-river Headwater Region

NASA Astrophysics Data System (ADS)

Zhou, B.; Xiao, H.

2016-12-01

Daily radiation and meteorological data were collected at an alpine marsh meadow site in the Three-river Headwater Region(THR). Use them to assess radiation models determined after comparing the performance between Zuo model and the model recommend by FAO56P-M.Four methods, FAO56P-M, Priestley-Taylor, Hargreaves, and Makkink methods were applied to determine daily reference evapotranspiration( ETr) for the growing season and built the empirical models for estimating daily actual evapotranspiration ETa between ETr derived from the four methods and evapotranspiration derived from Bowen Ratio method on alpine marsh meadow in this region. After comparing the performance of four empirical models by RMSE, MAE and AI, it showed these models all can get the better estimated daily ETaon alpine marsh meadow in this region, and the best performance of the FAO56 P-M, Makkink empirical model were better than Priestley-Taylor and Hargreaves model.

Theoretical Properties of Acoustical Speckle Interferometry.

DTIC Science & Technology

1980-09-01

an obvious one , since it was first performed in the acoustical holography. An acoustical speckle interferometry study has been demonstrated to be a...experiments in which pulses were used to study the propagation of the circumferential waves on aluminum cylinders immersed in water. In 1969, Bunney...destructive Testing SB. ABTRACT aCdo as revers. NW ass a" Id by block numb") Acoustical speckle interferometry is based locally on the elastodynamic response

Two-photon speckle illumination for super-resolution microscopy.

PubMed

Negash, Awoke; Labouesse, Simon; Chaumet, Patrick C; Belkebir, Kamal; Giovannini, Hugues; Allain, Marc; Idier, Jérôme; Sentenac, Anne

2018-06-01

We present a numerical study of a microscopy setup in which the sample is illuminated with uncontrolled speckle patterns and the two-photon excitation fluorescence is collected on a camera. We show that, using a simple deconvolution algorithm for processing the speckle low-resolution images, this wide-field imaging technique exhibits resolution significantly better than that of two-photon excitation scanning microscopy or one-photon excitation bright-field microscopy.

Two-Dimensional Laser-Speckle Surface-Strain Gauge

NASA Technical Reports Server (NTRS)

Barranger, John P.; Lant, Christian

1992-01-01

Extension of Yamaguchi's laser-speckle surface-strain-gauge method yields data on two-dimensional surface strains in times as short as fractions of second. Laser beams probe rough spot on surface of specimen before and after processing. Changes in speckle pattern of laser light reflected from spot indicative of changes in surface strains during processing. Used to monitor strains and changes in strains induced by hot-forming and subsequent cooling of steel.

Recruitment of phosphorylated small heat shock protein Hsp27 to nuclear speckles without stress

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bryantsev, A.L.; Chechenova, M.B.; Shelden, E.A.

During stress, the mammalian small heat shock protein Hsp27 enters cell nuclei. The present study examines the requirements for entry of Hsp27 into nuclei of normal rat kidney (NRK) renal epithelial cells, and for its interactions with specific nuclear structures. We find that phosphorylation of Hsp27 is necessary for the efficient entry into nuclei during heat shock but not sufficient for efficient nuclear entry under control conditions. We further report that Hsp27 is recruited to an RNAse sensitive fraction of SC35 positive nuclear speckles, but not other intranuclear structures, in response to heat shock. Intriguingly, Hsp27 phosphorylation, in the absencemore » of stress, is sufficient for recruitment to speckles found in post-anaphase stage mitotic cells. Additionally, pseudophosphorylated Hsp27 fused to a nuclear localization peptide (NLS) is recruited to nuclear speckles in unstressed interphase cells, but wildtype and nonphosphorylatable Hsp27 NLS fusion proteins are not. The expression of NLS-Hsp27 mutants does not enhance colony forming abilities of cells subjected to severe heat shock, but does regulate nuclear speckle morphology. These data demonstrate that phosphorylation, but not stress, mediates Hsp27 recruitment to an RNAse soluble fraction of nuclear speckles and support a site-specific role for Hsp27 within the nucleus.« less

Artificial Incoherent Speckles Enable Precision Astrometry and Photometry in High-contrast Imaging

NASA Astrophysics Data System (ADS)

Jovanovic, N.; Guyon, O.; Martinache, F.; Pathak, P.; Hagelberg, J.; Kudo, T.

2015-11-01

State-of-the-art coronagraphs employed on extreme adaptive optics enabled instruments are constantly improving the contrast detection limit for companions at ever-closer separations from the host star. In order to constrain their properties and, ultimately, compositions, it is important to precisely determine orbital parameters and contrasts with respect to the stars they orbit. This can be difficult in the post-coronagraphic image plane, as by definition the central star has been occulted by the coronagraph. We demonstrate the flexibility of utilizing the deformable mirror in the adaptive optics system of the Subaru Coronagraphic Extreme Adaptive Optics system to generate a field of speckles for the purposes of calibration. Speckles can be placed up to 22.5 λ/D from the star, with any position angle, brightness, and abundance required. Most importantly, we show that a fast modulation of the added speckle phase, between 0 and π, during a long science integration renders these speckles effectively incoherent with the underlying halo. We quantitatively show for the first time that this incoherence, in turn, increases the robustness and stability of the adaptive speckles, which will improve the precision of astrometric and photometric calibration procedures. This technique will be valuable for high-contrast imaging observations with imagers and integral field spectrographs alike.

Determination of the effect of source intensity profile on speckle contrast using coherent spatial frequency domain imaging

PubMed Central

Rice, Tyler B.; Konecky, Soren D.; Owen, Christopher; Choi, Bernard; Tromberg, Bruce J.

2012-01-01

Laser Speckle Imaging (LSI) is fast, noninvasive technique to image particle dynamics in scattering media such as biological tissue. While LSI measurements are independent of the overall intensity of the laser source, we find that spatial variations in the laser source profile can impact measured flow rates. This occurs due to differences in average photon path length across the profile, and is of significant concern because all lasers have some degree of natural Gaussian profile in addition to artifacts potentially caused by projecting optics. Two in vivo measurement are performed to show that flow rates differ based on location with respect to the beam profile. A quantitative analysis is then done through a speckle contrast forward model generated within a coherent Spatial Frequency Domain Imaging (cSFDI) formalism. The model predicts remitted speckle contrast as a function of spatial frequency, optical properties, and scattering dynamics. Comparison with experimental speckle contrast images were done using liquid phantoms with known optical properties for three common beam shapes. cSFDI is found to accurately predict speckle contrast for all beam shapes to within 5% root mean square error. Suggestions for improving beam homogeneity are given, including a widening of the natural beam Gaussian, proper diffusing glass spreading, and flat top shaping using microlens arrays. PMID:22741080

Sound recovery via intensity variations of speckle pattern pixels selected with variance-based method

NASA Astrophysics Data System (ADS)

Zhu, Ge; Yao, Xu-Ri; Qiu, Peng; Mahmood, Waqas; Yu, Wen-Kai; Sun, Zhi-Bin; Zhai, Guang-Jie; Zhao, Qing

2018-02-01

In general, the sound waves can cause the vibration of the objects that are encountered in the traveling path. If we make a laser beam illuminate the rough surface of an object, it will be scattered into a speckle pattern that vibrates with these sound waves. Here, an efficient variance-based method is proposed to recover the sound information from speckle patterns captured by a high-speed camera. This method allows us to select the proper pixels that have large variances of the gray-value variations over time, from a small region of the speckle patterns. The gray-value variations of these pixels are summed together according to a simple model to recover the sound with a high signal-to-noise ratio. Meanwhile, our method will significantly simplify the computation compared with the traditional digital-image-correlation technique. The effectiveness of the proposed method has been verified by applying a variety of objects. The experimental results illustrate that the proposed method is robust to the quality of the speckle patterns and costs more than one-order less time to perform the same number of the speckle patterns. In our experiment, a sound signal of time duration 1.876 s is recovered from various objects with time consumption of 5.38 s only.

Advanced speckle sensing for internal coronagraphs

NASA Astrophysics Data System (ADS)

Noecker, Charley; Shaklan, Stuart; Wallace, James K.; Kern, Brian; Give'on, Amir; Kasdin, Jeremy; Belikov, Ruslan; Kendrick, Steve

2011-10-01

A 4-8m diameter telescope carrying a coronagraph instrument is a leading candidate for an anticipated flagship mission to detect and characterize Earth-size exoplanets in the 2020s.1 Many candidate coronagraph instruments have been proposed, and one is close to meeting some of the principal requirements for that mission. But the telescope and instrument will need exquisite stability and precise control of the incoming wavefront to enable detection of faint companions (10-10of the star) at an angular separation of 2-4 Airy radii. In particular, wavefront errors cause speckles in the image, and variations in those speckles can confound the exoplanet detection. This challenge is compounded by the background light from zodiacal dust around our Sun and the target star, which limits the speed with which we can estimate and correct the speckles. We are working on developing coherent speckle detection techniques that will allow rapid calibration of speckles on the science detector, allowing subtraction in post-processing or correction with deformable mirrors. The expected speed improvement allows a much quicker timeline for measurement & calibration, which reduces the required telescope stability requirement and eases both the flight system design and the challenge of ground testing. We will describe the experiments and summarize progress to date.

Reaching the Diffraction Limit - Differential Speckle and Wide-Field Imaging for the WIYN Telescope

NASA Technical Reports Server (NTRS)

Scott, Nic J.; Howell, Steve; Horch, Elliott

2016-01-01

Speckle imaging allows telescopes to achieve diffraction limited imaging performance. The technique requires cameras capable of reading out frames at a very fast rate, effectively 'freezing out' atmospheric seeing. The resulting speckles can be correlated and images reconstructed that are at the diffraction limit of the telescope. These new instruments are based on the successful performance and design of the Differential Speckle Survey Instrument (DSSI).The instruments are being built for the Gemini-N and WIYN telescopes and will be made available to the community via the peer review proposal process. We envision their primary use to be validation and characterization of exoplanet targets from the NASA, K2 and TESS missions and RV discovered exoplanets. Such targets will provide excellent follow-up candidates for both the WIYN and Gemini telescopes. We expect similar data quality in speckle imaging mode with the new instruments. Additionally, both cameras will have a wide-field mode and standard SDSS filters. They will be highly versatile instruments and it is that likely many other science programs will request time on the cameras. The limiting magnitude for speckle observations will remain around 13-14th at WIYN and 16-17th at Gemini, while wide-field, normal CCD imaging operation should be able to go to much fainter, providing usual CCD imaging and photometric capabilities. The instruments will also have high utility as scoring cameras for telescope engineering purposes, or other applications where high time resolution is needed. Instrument support will be provided, including a software pipeline that takes raw speckle data to fully reconstructed images.

Comparison of phase unwrapping algorithms for topography reconstruction based on digital speckle pattern interferometry

NASA Astrophysics Data System (ADS)

Li, Yuanbo; Cui, Xiaoqian; Wang, Hongbei; Zhao, Mengge; Ding, Hongbin

2017-10-01

Digital speckle pattern interferometry (DSPI) can diagnose the topography evolution in real-time, continuous and non-destructive, and has been considered as a most promising technique for Plasma-Facing Components (PFCs) topography diagnostic under the complicated environment of tokamak. It is important for the study of digital speckle pattern interferometry to enhance speckle patterns and obtain the real topography of the ablated crater. In this paper, two kinds of numerical model based on flood-fill algorithm has been developed to obtain the real profile by unwrapping from the wrapped phase in speckle interference pattern, which can be calculated through four intensity images by means of 4-step phase-shifting technique. During the process of phase unwrapping by means of flood-fill algorithm, since the existence of noise pollution, and other inevitable factors will lead to poor quality of the reconstruction results, this will have an impact on the authenticity of the restored topography. The calculation of the quality parameters was introduced to obtain the quality-map from the wrapped phase map, this work presents two different methods to calculate the quality parameters. Then quality parameters are used to guide the path of flood-fill algorithm, and the pixels with good quality parameters are given priority calculation, so that the quality of speckle interference pattern reconstruction results are improved. According to the comparison between the flood-fill algorithm which is suitable for speckle pattern interferometry and the quality-guided flood-fill algorithm (with two different calculation approaches), the errors which caused by noise pollution and the discontinuous of the strips were successfully reduced.

A comparison between energy transfer and atmospheric turbulent exchanges over alpine meadow and banana plantation

NASA Astrophysics Data System (ADS)

Ding, Zhangwei; Ma, Yaoming; Wen, Zhiping; Ma, Weiqiang; Chen, Shiji

2017-07-01

Banana plantation and alpine meadow ecosystems in southern China and the Tibetan Plateau (TP) are unique in the underlying surfaces they exhibit. In this study, we used eddy covariance and a micrometeorological tower to examine the characteristics of land surface energy exchanges over a banana plantation in southern China and an alpine meadow in the Tibetan Plateau from May 2010 to August 2012. The results showed that the diurnal and seasonal variations in upward shortwave radiation flux and surface soil heat flux were larger over the alpine meadow than over the banana plantation surface. Dominant energy partitioning varied with season. Latent heat flux was the main consumer of net radiation flux in the growing season, whereas sensible heat flux was the main consumer during other periods. The Monin-Obukhov similarity theory was employed for comparative purposes, using sonic anemometer observations of flow over the surfaces of banana plantations in the humid southern China monsoon region and the semi-arid areas of the TP, and was found to be applicable. Over banana plantation and alpine meadow areas, the average surface albedo and surface aerodynamic roughness lengths under neutral atmospheric conditions were ˜0.128 and 0.47 m, and ˜0.223 and 0.01 m, respectively. During the measuring period, the mean annual bulk transfer coefficients for momentum and sensible heat were 1.47 × 10-2 and 7.13 × 10-3, and 2.91 × 10-3 and 1.96 × 10-3, for banana plantation and alpine meadow areas, respectively.

Assessing Carbon Storage and Sequestration of Seagrass Meadows on the Pacific Coast of Canada

NASA Astrophysics Data System (ADS)

Postlethwaite, V. R.; McGowan, A. E.; Robinson, C.; Kohfeld, K. E.; Pellatt, M. G.; Yakimishyn, J.; Chastain, S. G.

2016-12-01

Recent estimates suggest that seagrasses are highly efficient carbon sinks, storing a disproportionate amount of carbon for their relatively small area (only approximately 0.2% of the global ocean), and that they may bury carbon up to 12 times faster than terrestrial forests. Unfortunately, seagrass meadows are being lost at a rate of 0.4-2.6% yr-1, potentially releasing 0.15-1.02 Pg (billion tonnes) carbon dioxide into the atmosphere annually. Research on seagrass carbon stocks has been mainly limited to areas in the Mediterranean, Southeast Asia, and Western Australia, and specifically has been very limited in the Northeast Pacific. We aim to characterize the carbon storage and sequestration occurring in the Pacific Rim National Park Reserve and the Clayoquot Sound area, off the western coast of Vancouver Island, British Columbia (BC). Each of our sites varied in environmental characteristics representative of BC's seagrass meadows, including freshwater influence. Six cores, plus one from a "reference" site were taken from each meadow. Loss on ignition (LOI) and elemental analysis will be used to determine organic C and carbonate content. Additionally, we will use dry bulk density, 210Pb dating and seagrass density data to determine carbon accumulation rates and total meadow carbon stocks to provide a comprehensive picture of carbon storage and sequestration in BC's seagrass meadows. Carbon storage results will contribute to global estimates of seagrass carbon stocks via the Commission for Environmental Cooperation, as well as assist in marine ecosystem conservation planning and help in understanding the value of these ecosystems, especially as a means of climate change mitigation.

Transformation of ecofunctional parameters of soil microbial cenoses in clearings for power transmission lines in Central Siberia

NASA Astrophysics Data System (ADS)

Bogorodskaya, A. V.; Ponomareva, T. V.; Efimov, D. Yu.; Shishikin, A. S.

2017-06-01

Changes in soil microbial processes and phytocenotic parameters were studied in clearings made for power transmission lines in the subtaiga and southern taiga of Central Siberia. In these clearings, secondary meadow communities play the main environmental role. The substitution of meadow vegetation for forest vegetation, the increase in the phytomass by 40-120%, and the transformation of the hydrothermic regime in the clearings led to the intensification of the humus-accumulative process, growth of the humus content, reduction in acidity and oligotrophy of the upper horizons in the gray soils of the meadow communities, and more active microbial mineralization of organic matter. In the humus horizon of the soils under meadows, the microbial biomass (Cmicr) increased by 20-90%, and the intensity of basal respiration became higher by 60-90%. The values of the microbial metabolic quotient were also higher in these soils than in the soils under the native forests. In the 0- to 50-cm layer of the gray soils under the meadows, the total Cmicr reserves were 35-45% greater and amounted to 230-320 g/m3; the total microbial production of CO2 was 1.5-2 times higher than that in the soil of the adjacent forest and reached 770-840 mg CO2-C/m3 h. The predominance of mineralization processes in the soils under meadows in the clearings reflected changes in edaphic and trophic conditions of the soils and testified to an active inclusion of the herb falloff into the biological cycle.

Predicted effects of proposed new regulation plans on sedge/grass meadows of Lake Ontario

USGS Publications Warehouse

Wilcox, D.A.; Xie, Y.

2008-01-01

Previously described models for predicting the percent of Lake Ontario wetlands that would be occupied by sedge/grass-dominated meadow marsh were used to test four proposed new plans for regulation of lake levels and to make comparisons with the current plan and unregulated conditions. The models for drowned river mouth, barrier beach, open embayment, and protected embayment wetlands assessed responses to lake levels that would be generated by each plan under net total supplies modified from those that occurred from1900 to 2000. In years when reduced supplies would allow meadow marsh regeneration, simulated unregulated lake levels produced the most meadow marsh in all wetland geomorphic types; current Plan 1958DD produced the least. Overall predicted percent meadow marsh under the test plans decreased in the order B+, 2007, D+, and A+, and the latter three plans produced rather similar results in many cases. Lower percentages of meadow marsh under some plans were due to insufficient low lake levels that could allow soils to dry and restrict invasion by cattails, as well as lack of periodic high lake levels that could kill invading upland plants. An assessment of seasonal lake-level characteristics demonstrated that Plan 2007 would reduce mean winter lake levels by 13 cm or more than Plan B+ and springtime lake levels by more than 10 cm. These seasonal differences could result in less winter habitat for muskrats and reduced access to spring spawning habitats for fish such as northern pike. Our model results provide important information for use in the process of selecting a new regulation plan for Lake Ontario.

A physical framework for evaluating net effects of wet meadow restoration on late summer streamflow

NASA Astrophysics Data System (ADS)

Grant, G.; Nash, C.; Selker, J. S.; Lewis, S.; Noël, P.

2017-12-01

Restoration of degraded wet meadows that develop on upland valley floors is intended to achieve a range of ecological benefits. A widely cited benefit is the potential for meadow restoration to augment late-season streamflow; however, there has been little field data demonstrating increased summer flows following restoration. Instead, the hydrologic consequences of restoration have typically been explored using coupled groundwater and surface water flow models at instrumented sites. The expected magnitude and direction of change provided by models has, however, been inconclusive. Here, we assess the streamflow benefit that can be obtained by wet meadow restoration using a parsimonious, physically-based approach. We use a one-dimensional linearized Boussinesq equation with a superimposed solution for changes in storage due to groundwater upwelling and and explicitly calculate evapotranspiration using the White Method. The model accurately predicts water table elevations from field data in the Middle Fork John Day watershed in Oregon, USA. The full solution shows that while raising channel beds can increase total water storage via increases in water table elevation in upland valley bottoms, the contributions of both lateral and longitudinal drainage from restored floodplains to late summer streamflow are undetectably small, while losses in streamflow due to greater transpiration, lower hydraulic gradients, and less drainable pore volume are substantial. Although late-summer streamflow increases should not be expected as a direct result of wet meadow restoration, these approaches offer benefits for improving the quality and health of riparian and meadow vegetation that would warrant considering such measures, even at the cost of increased water demand and reduced streamflow.

71. Meadow Creek Culvert. This is an example of a ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

71. Meadow Creek Culvert. This is an example of a triple arch concrete box culvert with stone facing mimicking rigid frame structures. - Blue Ridge Parkway, Between Shenandoah National Park & Great Smoky Mountains, Asheville, Buncombe County, NC

Registration of Azov meadow fescue

USDA-ARS?s Scientific Manuscript database

'Azov' meadow fescue [Schedonorus pratensis (Huds.) P. Beauv.; syn. Festuca pratensis Huds.; syn. Lolium pratense (Huds.) Darbysh.] is a synthetic population originating from 1000 parental genotypes. The parents of Azov were selected from ten Russian plant introductions, mostly originating from the...

Processes affecting the spatial distribution of seagrass meadow sedimentary material on Yao Yai Island, Thailand

NASA Astrophysics Data System (ADS)

Quak, Michelle S. Y.; Ziegler, Alan D.; Benner, Shawn G.; Evans, Sam; Todd, Peter A.; Gillis, Lucy G.; Vongtanaboon, Sukanya; Jachowski, Nick; Bouma, Tjeerd J.

2016-12-01

Many islands throughout SE Asia are experiencing rapid development and land-cover conversion that potentially threaten sensitive coastal ecosystems, such as seagrasses, through increased loading of sediment and nutrients originating from disturbed catchments draining to the sea. To evaluate this threat for one such island in Southern Thailand (Yao Yai), we perform sediment source tracing via end-member mixing analysis using stable isotopes δ13C and δ15N in organic matter to explore sediment loading in a seagrass meadow. The analysis indicates that sedimentary material in the meadow originates mostly from ocean-associated sources (∼62% from seagrass detritus, seston, and ocean sediments). Terrestrial material comprises ∼19% of the organic material found in the seagrass meadow, with another 20% originating from an adjacent mangrove forest. Approximately one-fourth of the seagrass meadow material (24%) is detritus that has been (re)deposited internally. The high contribution of terrestrial-derived organic matter deposited near the river mouth demonstrates that substantial quantities of sediment are being transferred from upslope erosion sources into the seagrass meadow. However, only a small amount of this material is deposited throughout the entire bay because much of the terrestrial- and mangrove-derived sediment is transferred to the open ocean via channels that are periodically dredged to allow boat access to two small inland harbours. This positive affect of dredging has not received very much attention in existing literature. River water flowing to the channels during falling tide delivers sediment to these efficient pathways, where much of it bypasses the seagrass meadow at periods of time when sediment deposition would normally be the greatest. There is growing concern that ongoing land-cover changes and planned urbanization related to tourism and agriculture on the island may boost sediment/nutrients above a critical threshold, beyond that revealed in our baseline survey. Our tracer-based sediment source approach did not corroborate our observations of substantial erosion and land degradation in the upper catchment-but this could be a result of sediment flushing through the dredged channels. We encourage others to combine such methods with sediment budgeting approaches to triangulate results for consistency. Finally, from an ecological perspective, the high presence of seagrass detritus we found in bay sediments suggests seagrass is potentially a key source of nutrients for the meadow itself, as well as other connected ecosystems.

A qualitative and quantitative assessment of the reproductive litter from Posidonia oceanica accumulated on a sand beach following a storm

NASA Astrophysics Data System (ADS)

Balestri, E.; Vallerini, F.; Lardicci, C.

2006-01-01

The biomass of reproductive litter from Posidonia oceanica deposited on a 3.5 km stretch of beach in the north-western Mediterranean, as a consequence of a storm in May 2004, was quantified. The damage caused by this storm to the meadow from which fruits originated was evaluated in terms of loss of seed production. Intermediate fruits (i.e., developing fruits) were the most important reproductive component, followed by immature and damaged fruits. No fully mature fruits were found. No significant differences in the average number of fruits and biomass accumulated were detected among beach sections hundreds of metres apart. Extrapolation of the results at four beach sections indicated that about 1 million fruits were deposited on the entire (3.5 km) beach. This was equivalent to the seed production potential of about 313,217 inflorescences, or a flowered area of 1500 m 2. The organic input to the beach was 224 kg ash-free dry weight (AFDM). These results suggest that storms may provide an unpredictable source of seed mortality in P. oceanica. The reproductive material produced by storms, however, may constitute an important source of allochthonous organic matter to the beach.

Speckle: tool for diagnosis assistance

NASA Astrophysics Data System (ADS)

Carvalho, O.; Guyot, S.; Roy, L.; Benderitter, M.; Clairac, B.

2006-09-01

In this paper, we present a new approach of the speckle phenomenon. This method is based on the fractal Brownian motion theory and allows the extraction of three stochastic parameters to characterize the speckle pattern. For the first time, we present the results of this method applied to the discrimination of the healthy vs. pathologic skin. We also demonstrate, in case of the scleroderma, than this method is more accurate than the classical frequential approach.

Single-shot speckle reduction in numerical reconstruction of digitally recorded holograms.

PubMed

Hincapie, Diego; Herrera-Ramírez, Jorge; Garcia-Sucerquia, Jorge

2015-04-15

A single-shot method to reduce the speckle noise in the numerical reconstructions of electronically recorded holograms is presented. A recorded hologram with the dimensions N×M is split into S=T×T sub-holograms. The uncorrelated superposition of the individually reconstructed sub-holograms leads to an image with the speckle noise reduced proportionally to the 1/S law. The experimental results are presented to support the proposed methodology.

Speckle evolution with multiple steps of least-squares phase removal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen Mingzhou; Dainty, Chris; Roux, Filippus S.

2011-08-15

We study numerically the evolution of speckle fields due to the annihilation of optical vortices after the least-squares phase has been removed. A process with multiple steps of least-squares phase removal is carried out to minimize both vortex density and scintillation index. Statistical results show that almost all the optical vortices can be removed from a speckle field, which finally decays into a quasiplane wave after such an iterative process.

Close Binary Star Speckle Interferometry on the McMath-Pierce 0.8-Meter Solar Telescope

NASA Astrophysics Data System (ADS)

Wiley, Edward; Harshaw, Richard; Jones, Gregory; Branston, Detrick; Boyce, Patrick; Rowe, David; Ridgely, John; Estrada, Reed; Genet, Russell

2015-09-01

Observations were made in April 2014 to assess the utility of the 0.8-meter solar telescope at the McMath-Pierce Solar Observatory at Kitt Peak National Observatory for performing speckle interferometry observations of close binary stars. Several configurations using science cameras, acquisition cameras, eyepieces, and flip mirrors were evaluated. Speckle images were obtained and recommendations for further improvement of the acquisition system are presented.

Simulation of speckle patterns with pre-defined correlation distributions.

PubMed

Song, Lipei; Zhou, Zhen; Wang, Xueyan; Zhao, Xing; Elson, Daniel S

2016-03-01

We put forward a method to easily generate a single or a sequence of fully developed speckle patterns with pre-defined correlation distribution by utilizing the principle of coherent imaging. The few-to-one mapping between the input correlation matrix and the correlation distribution between simulated speckle patterns is realized and there is a simple square relationship between the values of these two correlation coefficient sets. This method is demonstrated both theoretically and experimentally. The square relationship enables easy conversion from any desired correlation distribution. Since the input correlation distribution can be defined by a digital matrix or a gray-scale image acquired experimentally, this method provides a convenient way to simulate real speckle-related experiments and to evaluate data processing techniques.

Digital 3D holographic display using scattering layers for enhanced viewing angle and image size

NASA Astrophysics Data System (ADS)

Yu, Hyeonseung; Lee, KyeoReh; Park, Jongchan; Park, YongKeun

2017-05-01

In digital 3D holographic displays, the generation of realistic 3D images has been hindered by limited viewing angle and image size. Here we demonstrate a digital 3D holographic display using volume speckle fields produced by scattering layers in which both the viewing angle and the image size are greatly enhanced. Although volume speckle fields exhibit random distributions, the transmitted speckle fields have a linear and deterministic relationship with the input field. By modulating the incident wavefront with a digital micro-mirror device, volume speckle patterns are controlled to generate 3D images of micrometer-size optical foci with 35° viewing angle in a volume of 2 cm × 2 cm × 2 cm.

High-speed multi-exposure laser speckle contrast imaging with a single-photon counting camera

PubMed Central

Dragojević, Tanja; Bronzi, Danilo; Varma, Hari M.; Valdes, Claudia P.; Castellvi, Clara; Villa, Federica; Tosi, Alberto; Justicia, Carles; Zappa, Franco; Durduran, Turgut

2015-01-01

Laser speckle contrast imaging (LSCI) has emerged as a valuable tool for cerebral blood flow (CBF) imaging. We present a multi-exposure laser speckle imaging (MESI) method which uses a high-frame rate acquisition with a negligible inter-frame dead time to mimic multiple exposures in a single-shot acquisition series. Our approach takes advantage of the noise-free readout and high-sensitivity of a complementary metal-oxide-semiconductor (CMOS) single-photon avalanche diode (SPAD) array to provide real-time speckle contrast measurement with high temporal resolution and accuracy. To demonstrate its feasibility, we provide comparisons between in vivo measurements with both the standard and the new approach performed on a mouse brain, in identical conditions. PMID:26309751

Simulation of speckle patterns with pre-defined correlation distributions

PubMed Central

Song, Lipei; Zhou, Zhen; Wang, Xueyan; Zhao, Xing; Elson, Daniel S.

2016-01-01

We put forward a method to easily generate a single or a sequence of fully developed speckle patterns with pre-defined correlation distribution by utilizing the principle of coherent imaging. The few-to-one mapping between the input correlation matrix and the correlation distribution between simulated speckle patterns is realized and there is a simple square relationship between the values of these two correlation coefficient sets. This method is demonstrated both theoretically and experimentally. The square relationship enables easy conversion from any desired correlation distribution. Since the input correlation distribution can be defined by a digital matrix or a gray-scale image acquired experimentally, this method provides a convenient way to simulate real speckle-related experiments and to evaluate data processing techniques. PMID:27231589

Monitoring of bread cooling by statistical analysis of laser speckle patterns

NASA Astrophysics Data System (ADS)

Lyubenova, Tanya; Stoykova, Elena; Nacheva, Elena; Ivanov, Branimir; Panchev, Ivan; Sainov, Ventseslav

2013-03-01

The phenomenon of laser speckle can be used for detection and visualization of physical or biological activity in various objects (e.g. fruits, seeds, coatings) through statistical description of speckle dynamics. The paper presents the results of non-destructive monitoring of bread cooling by co-occurrence matrix and temporal structure function analysis of speckle patterns which have been recorded continuously within a few days. In total, 72960 and 39680 images were recorded and processed for two similar bread samples respectively. The experiments proved the expected steep decrease of activity related to the processes in the bread samples during the first several hours and revealed its oscillating character within the next few days. Characterization of activity over the bread sample surface was also obtained.

Complementary Speckle Patterns: Deterministic Interchange of Intrinsic Vortices and Maxima through Scattering Media.

PubMed

Gateau, Jérôme; Rigneault, Hervé; Guillon, Marc

2017-01-27

Intensity maxima and zeros of speckle patterns obtained behind a diffuser are experimentally interchanged by applying a spiral phase delay of charge ±1 to the impinging coherent beam. This transform arises from the expectation that tightly focused beams, which have a planar wave front around the focus, are so changed into vortex beams and vice versa. The statistics of extrema locations and the intensity distribution of the so-generated "complementary" patterns are characterized by numerical simulations. It is demonstrated experimentally that the incoherent superposition of the three "complementary speckle patterns" yield a synthetic speckle grain size enlarged by a factor of sqrt[3]. A cyclic permutation of optical vortices and intensity maxima is unexpectedly observed and discussed.

Hazardous Waste Cleanup: Southland Corporation in Great Meadows, New Jersey

EPA Pesticide Factsheets

The Southland Corporation site is located on Alphano Road, 277 acres in Great Meadows, Independence Township, Warren County, New Jersey. Gamma Chemical Company owned and operated the facility from 1950 to 1966, followed by Ashland Chemical Company from

Registration of 'Hidden Valley' meadow fescue

USDA-ARS?s Scientific Manuscript database

'Hidden Valley' (Reg. No. CV-xxxx, PI xxxxxx) meadow fescue [Schedonorus pratensis (Huds.) P. Beauv.; syn. Festuca pratensis Huds.; syn. Lolium pratense (Huds.) Darbysh.] is a synthetic population originating from 561 parental genotypes. The original germplasm is of unknown central or northern Europ...

Savonarola at the stake: the rise and fall of Roy Meadow.

PubMed

Kaplan, Robert

2008-06-01

The aim of this paper is to describe the role of prominent paediatrician Professor Sir Roy Meadow in the controversy surrounding the diagnosis of Munchausen Syndrome by Proxy (MSBP) in mothers accused of murdering their children. The MSBP saga is a further chapter of an era of moral panic that started several decades ago with repressed memory therapy, satanic ritual abuse and multiple personalities. The fall of medieval sage Savonarola is an apt analogy for the fate of Roy Meadow. The history of medicine is rife with figures who become their own authority and rule by force of personality.

Alluvial Mountain Meadow Source-Sink Dynamics: Land-Cover Effects on Water and Fluvial Carbon Export

NASA Astrophysics Data System (ADS)

Weiss, T.; Covino, T. P.; Wohl, E.; Rhoades, C.; Fegel, T.; Clow, D. W.

2017-12-01

Fluvial networks of historically glaciated mountain landscapes alternate between confined and unconfined valley segments. In low-gradient unconfined reaches, river-connected wet meadows commonly establish, and have been recognized as important locations of long-term water, carbon, and nutrient storage. Among connected meadow floodplains, sink-source behavior shifts as a function of flow state; storing water at high flows (snowmelt) and contributing toward higher late-season baseflows. Despite these benefits, historical and contemporary land-use practices often result in the simplification of wet meadow systems, leading to reduced river-floodplain connectivity, lower water-tables and reductions in hydrologic buffering capacity. In this study, we are exploring hydrologic-carbon relationships across a gradient of valley confinement and river-floodplain connectivity (connected, n=3; disconnected, n=4) within the Colorado Rockies. Our approach includes hydrologic analysis, fluorometric assays, water chemistry, instream metabolic measures, and land-cover assessment to examine patterns between land-form, carbon quantity and quality, and stream ecosystem productivity. Between different meadow types, preliminary results suggest differences between instream productivity, carbon qualities, and hydrologic-carbon sink-source dynamics across the season. These data and analyses will provide insight into water, carbon and nutrient flux dynamics as a function of land-cover in mountain headwaters.

Selection of habitats by Emperor Geese during brood rearing

USGS Publications Warehouse

Schmutz, J.A.

2001-01-01

Although forage quality strongly affects gosling growth and consequently juvenile survival, the relative use of different plant communities by brood rearing geese has been poorly studied. On the Yukon-Kuskokwim Delta, Alaska, population growth and juvenile recruitment of Emperor Geese (Chen canagica) are comparatively low, and it is unknown whether their selection of habitats during brood rearing differs from other goose species. Radio-telemetry was used to document the use of habitats by 56 families of Emperor Geese in a 70 km2 portion of the Yukon-Kuskokwim Delta during brood rearing in 1994-1996. When contrasted with available habitats (a set of six habitat classes), as estimated from 398 random sampling locations, Emperor Geese strongly selected Saline Ponds, Mudflat, and Ramenskii Meadow habitats and avoided Levee Meadow, Bog Meadow, and Sedge Meadow. These selected habitats were the most saline, comprised one-third of the study area, and 43% of all locations were in Ramenskii Meadow. I contrasted these Emperor Goose locations with habitats used by the composite goose community, as inferred from the presence of goose feces at random locations. The marked difference between groups in this comparison implied that Cackling Canada Geese (Branta canadensis minima) and Greater White-fronted Geese (Anser albifrons) collectively selected much different brood rearing habitats than Emperor Geese. Received 20 February 2001, accepted 18 April 2001.

Seagrass meadows (Posidonia oceanica) distribution and trajectories of change

PubMed Central

Telesca, Luca; Belluscio, Andrea; Criscoli, Alessandro; Ardizzone, Giandomenico; Apostolaki, Eugenia T.; Fraschetti, Simonetta; Gristina, Michele; Knittweis, Leyla; Martin, Corinne S.; Pergent, Gérard; Alagna, Adriana; Badalamenti, Fabio; Garofalo, Germana; Gerakaris, Vasilis; Louise Pace, Marie; Pergent-Martini, Christine; Salomidi, Maria

2015-01-01

Posidonia oceanica meadows are declining at alarming rates due to climate change and human activities. Although P. oceanica is considered the most important and well-studied seagrass species of the Mediterranean Sea, to date there has been a limited effort to combine all the spatial information available and provide a complete distribution of meadows across the basin. The aim of this work is to provide a fine-scale assessment of (i) the current and historical known distribution of P. oceanica, (ii) the total area of meadows and (iii) the magnitude of regressive phenomena in the last decades. The outcomes showed the current spatial distribution of P. oceanica, covering a known area of 1,224,707 ha, and highlighted the lack of relevant data in part of the basin (21,471 linear km of coastline). The estimated regression of meadows amounted to 34% in the last 50 years, showing that this generalised phenomenon had to be mainly ascribed to cumulative effects of multiple local stressors. Our results highlighted the importance of enforcing surveys to assess the status and prioritize areas where cost-effective schemes for threats reduction, capable of reversing present patterns of change and ensuring P. oceanica persistence at Mediterranean scale, could be implemented. PMID:26216526

Effectiveness and consistency of a suite of descriptors for assessing the ecological status of seagrass meadows (Posidonia oceanica L. Delile)

NASA Astrophysics Data System (ADS)

Rotini, Alice; Belmonte, Alessandro; Barrote, Isabel; Micheli, Carla; Peirano, Andrea; Santos, Rui O.; Silva, João; Migliore, Luciana

2013-09-01

The increasing rate of human-induced environmental changes on coastal marine ecosystems has created a demand for effective descriptors, in particular for those suitable for monitoring the status of seagrass meadows. Growing evidence has supported the useful application of biochemical and genetic descriptors such as secondary metabolite synthesis, photosynthetic activity and genetic diversity. In the present study, we have investigated the effectiveness of different descriptors (traditional, biochemical and genetic) in monitoring seagrass meadow conservation status. The Posidonia oceanica meadow of Monterosso al Mare (Ligurian sea, NW Mediterranean) was subjected to the measurement of bed density, leaf biometry, total phenols, soluble protein and photosynthetic pigment content as well as to RAPD marker analysis. This suite of descriptors provided evidence of their effectiveness and convenient application as markers of the conservation status of P. oceanica and/or other seagrasses. Biochemical/genetic descriptors and those obtained by traditional methods depicted a well conserved meadow with seasonal variability and, particularly in summer, indicated a healthier condition in a portion of the bed (station C), which was in agreement with the physical and sedimentological features of the station. Our results support the usefulness of introducing biochemical and genetic approaches to seagrass monitoring programs since they are effective indicators of plant physiological stress and environmental disturbance.

Laser Speckle Imaging of Blood Flow Beneath Static Scattering Media

NASA Astrophysics Data System (ADS)

Regan, Caitlin Anderson

Laser speckle imaging (LSI) is a wide-field optical imaging technique that provides information about the movement of scattering particles in biological samples. LSI is used to create maps of relative blood flow and perfusion in samples such as the skin, brain, teeth, gingiva, and other biological tissues. The presence of static, or non-moving, optical scatterers affects the ability of LSI to provide true quantitative and spatially resolved measurements of blood flow. With in vitro experiments using tissue-simulating phantoms, we determined that temporal analysis of raw speckle image sequences improved the quantitative accuracy of LSI to measure flow beneath a static scattering layer. We then applied the temporal algorithm to assess the potential of LSI to monitor oral health. We designed and tested two generations of miniature LSI devices to measure flow in the pulpal chamber of teeth and in the gingiva. Our preliminary clinical pilot data indicated that speckle contrast may correlate with gingival health. To improve visualization of subsurface blood vessels, we developed a technique called photothermal LSI. We applied a short pulse of laser energy to selectively perturb the motion of red blood cells, increasing the signal from vasculature relative to the surroundings. To study the spectral and depth dependence of laser speckle contrast, we developed a Monte Carlo model of light and momentum transport to simulate speckle contrast. With an increase in the thickness of the overlying static-scattering layer, we observed a quadratic decrease in the quantity of dynamically scattered light collected by the detector. We next applied the model to study multi-exposure speckle imaging (MESI), a method that purportedly improves quantitative accuracy of subsurface blood flow measurements. We unexpectedly determined that MESI faced similar depth limitations as conventional LSI, findings that were supported by in vitro experimental data. Finally, we used the model to study the effects of epidermal melanin absorption on LSI, and demonstrated that speckle contrast is less sensitive to varying melanin content than reflectance. We then proposed a two-wavelength measurement protocol that may enable melanin-independent LSI measurements of blood flow in patients with varying skin types. In conclusion, through in vitro and in silico experiments, we were able to further the understanding of the depth dependent origins of laser speckle contrast as well as the inherent limitations of this technology.

Exploiting physical constraints for multi-spectral exo-planet detection

NASA Astrophysics Data System (ADS)

Thiébaut, Éric; Devaney, Nicholas; Langlois, Maud; Hanley, Kenneth

2016-07-01

We derive a physical model of the on-axis PSF for a high contrast imaging system such as GPI or SPHERE. This model is based on a multi-spectral Taylor series expansion of the diffraction pattern and predicts that the speckles should be a combination of spatial modes with deterministic chromatic magnification and weighting. We propose to remove most of the residuals by fitting this model on a set of images at multiple wavelengths and times. On simulated data, we demonstrate that our approach achieves very good speckle suppression without additional heuristic parameters. The residual speckles1, 2 set the most serious limitation in the detection of exo-planets in high contrast coronographic images provided by instruments such as SPHERE3 at the VLT, GPI4, 5 at Gemini, or SCExAO6 at Subaru. A number of post-processing methods have been proposed to remove as much as possible of the residual speckles while preserving the signal from the planets. These methods exploit the fact that the speckles and the planetary signal have different temporal and spectral behaviors. Some methods like LOCI7 are based on angular differential imaging8 (ADI), spectral differential imaging9, 10 (SDI), or on a combination of ADI and SDI.11 Instead of working on image differences, we propose to tackle the exo-planet detection as an inverse problem where a model of the residual speckles is fit on the set of multi-spectral images and, possibly, multiple exposures. In order to reduce the number of degrees of freedom, we impose specific constraints on the spatio-spectral distribution of stellar speckles. These constraints are deduced from a multi-spectral Taylor series expansion of the diffraction pattern for an on-axis source which implies that the speckles are a combination of spatial modes with deterministic chromatic magnification and weighting. Using simulated data, the efficiency of speckle removal by fitting the proposed multi-spectral model is compared to the result of using an approximation based on the singular value decomposition of the rescaled images. We show how the difficult problem to fitting a bilinear model on the can be solved in practise. The results are promising for further developments including application to real data and joint planet detection in multi-variate data (multi-spectral and multiple exposures images).

Reaching the Diffraction Limit - Differential Speckle and Wide-Field Imaging for the Gemini-N Telescope

NASA Technical Reports Server (NTRS)

Scott, Nic J.; Howell, Steve; Horch, Elliott

2016-01-01

Speckle imaging allows telescopes to achieve di raction limited imaging performance. The technique requires cameras capable of reading out frames at a very fast rate, e ectively `freezing out' atmospheric seeing. The resulting speckles can be correlated and images reconstructed that are at the di raction limit of the telescope. These new instruments are based on the successful performance and design of the Di erential Speckle Survey Instrument (DSSI) [2, 1]. The instruments are being built for the Gemini-N and WIYN telescopes and will be made available to the community via the peer review proposal process. We envision their primary use to be validation and characterization of exoplanet targets from the NASA K2 and TESS missions and RV discovered exoplanets. Such targets will provide excellent follow-up candidates for both the WIYN and Gemini telescopes [3]. Examples of DSSI data are shown in the gures below. We expect similar data quality in speckle imaging mode with the new instruments. Additionally, both cameras will have a wide- eld mode and standard SDSS lters. They will be highly versatile instruments and it is that likely many other science programs will request time on the cameras. The limiting magnitude for speckle observations, will remain around 13-14th at WIYN and 16-17th at Gemini, while wide- eld, normal CCD imaging operation should be able to go to much fainter, providing usual CCD imaging and photometric capabilities. The instruments will also have high utility as scoring cameras for telescope engineering purposes, or other applications where high time resolution is needed. Instrument support will be provided, including a software pipeline that takes raw speckle data to fully reconstructed images.

Functional assessment of the diaphragm by speckle tracking ultrasound during inspiratory loading.

PubMed

Oppersma, Eline; Hatam, Nima; Doorduin, Jonne; van der Hoeven, Johannes G; Marx, Gernot; Goetzenich, Andreas; Fritsch, Sebastian; Heunks, Leo M A; Bruells, Christian S

2017-11-01

Assessment of diaphragmatic effort is challenging, especially in critically ill patients in the phase of weaning. Fractional thickening during inspiration assessed by ultrasound has been used to estimate diaphragm effort. It is unknown whether more sophisticated ultrasound techniques such as speckle tracking are superior in the quantification of inspiratory effort. This study evaluates the validity of speckle tracking ultrasound to quantify diaphragm contractility. Thirteen healthy volunteers underwent a randomized stepwise threshold loading protocol of 0-50% of the maximal inspiratory pressure. Electric activity of the diaphragm and transdiaphragmatic pressures were recorded. Speckle tracking ultrasound was used to assess strain and strain rate as measures of diaphragm tissue deformation and deformation velocity, respectively. Fractional thickening was assessed by measurement of diaphragm thickness at end-inspiration and end-expiration. Strain and strain rate increased with progressive loading of the diaphragm. Both strain and strain rate were highly correlated to transdiaphragmatic pressure (strain r 2  = 0.72; strain rate r 2  = 0.80) and diaphragm electric activity (strain r 2  = 0.60; strain rate r 2  = 0.66). We conclude that speckle tracking ultrasound is superior to conventional ultrasound techniques to estimate diaphragm contractility under inspiratory threshold loading. NEW & NOTEWORTHY Transdiaphragmatic pressure using esophageal and gastric balloons is the gold standard to assess diaphragm effort. However, this technique is invasive and requires expertise, and the interpretation may be complex. We report that speckle tracking ultrasound can be used to detect stepwise increases in diaphragmatic effort. Strain and strain rate were highly correlated with transdiaphragmatic pressure, and therefore, diaphragm electric activity and speckle tracking might serve as reliable tools to quantify diaphragm effort in the future. Copyright © 2017 the American Physiological Society.

Speckle-reduction algorithm for ultrasound images in complex wavelet domain using genetic algorithm-based mixture model.

PubMed

Uddin, Muhammad Shahin; Tahtali, Murat; Lambert, Andrew J; Pickering, Mark R; Marchese, Margaret; Stuart, Iain

2016-05-20

Compared with other medical-imaging modalities, ultrasound (US) imaging is a valuable way to examine the body's internal organs, and two-dimensional (2D) imaging is currently the most common technique used in clinical diagnoses. Conventional 2D US imaging systems are highly flexible cost-effective imaging tools that permit operators to observe and record images of a large variety of thin anatomical sections in real time. Recently, 3D US imaging has also been gaining popularity due to its considerable advantages over 2D US imaging. It reduces dependency on the operator and provides better qualitative and quantitative information for an effective diagnosis. Furthermore, it provides a 3D view, which allows the observation of volume information. The major shortcoming of any type of US imaging is the presence of speckle noise. Hence, speckle reduction is vital in providing a better clinical diagnosis. The key objective of any speckle-reduction algorithm is to attain a speckle-free image while preserving the important anatomical features. In this paper we introduce a nonlinear multi-scale complex wavelet-diffusion based algorithm for speckle reduction and sharp-edge preservation of 2D and 3D US images. In the proposed method we use a Rayleigh and Maxwell-mixture model for 2D and 3D US images, respectively, where a genetic algorithm is used in combination with an expectation maximization method to estimate mixture parameters. Experimental results using both 2D and 3D synthetic, physical phantom, and clinical data demonstrate that our proposed algorithm significantly reduces speckle noise while preserving sharp edges without discernible distortions. The proposed approach performs better than the state-of-the-art approaches in both qualitative and quantitative measures.

Bas-relief map using texture analysis with application to live enhancement of ultrasound images.

PubMed

Du, Huarui; Ma, Rui; Wang, Xiaoying; Zhang, Jue; Fang, Jing

2015-05-01

For ultrasound imaging, speckle is one of the most important factors in the degradation of contrast resolution because it masks meaningful texture and has the potential to interfere with diagnosis. It is expected that researchers would explore appropriate ways to reduce the speckle noise, to find the edges of structures and enhance weak borders between different organs in ultrasound imaging. Inspired by the principle of differential interference contrast microscopy, a "bas-relief map" is proposed that depicts the texture structure of ultrasound images. Based on a bas-relief map, an adaptive bas-relief filter was developed for ultrafast despeckling. Subsequently, an edge map was introduced to enhance the edges of images in real time. The holistic bas-relief map approach has been used experimentally with synthetic phantoms and digital ultrasound B-scan images of liver, kidney and gallbladder. Based on the visual inspection and the performance metrics of the despeckled images, it was found that the bas-relief map approach is capable of effectively reducing the speckle while significantly enhancing contrast and tissue boundaries for ultrasonic images, and its speckle reduction ability is comparable to that of Kuan, Lee and Frost filters. Meanwhile, the proposed technique could preserve more intra-region details compared with the popular speckle reducing anisotropic diffusion technique and more effectively enhance edges. In addition, the adaptive bas-relief filter was much less time consuming than the Kuan, Lee and Frost filter and speckle reducing anisotropic diffusion techniques. The bas-relief map strategy is effective for speckle reduction and live enhancement of ultrasound images, and can provide a valuable tool for clinical diagnosis. Copyright © 2015 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Speckle Filtering of GF-3 Polarimetric SAR Data with Joint Restriction Principle.

PubMed

Xie, Jinwei; Li, Zhenfang; Zhou, Chaowei; Fang, Yuyuan; Zhang, Qingjun

2018-05-12

Polarimetric SAR (PolSAR) scattering characteristics of imagery are always obtained from the second order moments estimation of multi-polarization data, that is, the estimation of covariance or coherency matrices. Due to the extra-paths that signal reflected from separate scatterers within the resolution cell has to travel, speckle noise always exists in SAR images and has a severe impact on the scattering performance, especially on single look complex images. In order to achieve high accuracy in estimating covariance or coherency matrices, three aspects are taken into consideration: (1) the edges and texture of the scene are distinct after speckle filtering; (2) the statistical characteristic should be similar to the object pixel; and (3) the polarimetric scattering signature should be preserved, in addition to speckle reduction. In this paper, a joint restriction principle is proposed to meet the requirement. Three different restriction principles are introduced to the processing of speckle filtering. First, a new template, which is more suitable for the point or line targets, is designed to ensure the morphological consistency. Then, the extent sigma filter is used to restrict the pixels in the template aforementioned to have an identical statistic characteristic. At last, a polarimetric similarity factor is applied to the same pixels above, to guarantee the similar polarimetric features amongst the optional pixels. This processing procedure is named as speckle filtering with joint restriction principle and the approach is applied to GF-3 polarimetric SAR data acquired in San Francisco, CA, USA. Its effectiveness of keeping the image sharpness and preserving the scattering mechanism as well as speckle reduction is validated by the comparison with boxcar filters and refined Lee filter.

The speckle polarimeter of the 2.5-m telescope: Design and calibration

NASA Astrophysics Data System (ADS)

Safonov, B. S.; Lysenko, P. A.; Dodin, A. V.

2017-05-01

The speckle polarimeter is a facility instrument of the 2.5-mSAIMSU telescope that combines the features of a speckle interferometer and a polarimeter. The speckle polarimeter is designed for observations in several visible bands in the following modes: speckle interferometry, polarimetry, speckle polarimetry, and polaroastrometry. In this paper we describe the instrument design and the procedures for determining the angular scale of the camera and the position angle of the camera and the polarimeter. Our measurements of the parameters for the binary star HD 9165 are used as an example to demonstrate the technique of speckle interferometry. For bright objects the accuracy of astrometry is limited by the error of the correction for the distortion caused by the atmospheric dispersion compensator. At zenith distances less than 45◦ the additional relative measurement error of the separation is 0.7%, while the additional error of the position angle is 0.3°. In the absence of a dispersion compensator the accuracy of astrometry is limited by the uncertainty in the scale and position angle of the camera, which are 0.15% and 0.06°, respectively. We have performed polarimetric measurements of unpolarized stars and polarization standards. The instrumental polarization at the Cassegrain focus in the V band does not exceed 0.01%. The instrumental polarization for the Nasmyth focus varies between 2 and 4% within the visible range; we have constructed its model and give a method for its elimination from the measurements. For stars with an intrinsic polarization of less than 0.2% during observations at the Cassegrain focus the error is determined mainly by the photon and readout noises and can reach 5 × 10-5.

Correcting for motion artifact in handheld laser speckle images

NASA Astrophysics Data System (ADS)

Lertsakdadet, Ben; Yang, Bruce Y.; Dunn, Cody E.; Ponticorvo, Adrien; Crouzet, Christian; Bernal, Nicole; Durkin, Anthony J.; Choi, Bernard

2018-03-01

Laser speckle imaging (LSI) is a wide-field optical technique that enables superficial blood flow quantification. LSI is normally performed in a mounted configuration to decrease the likelihood of motion artifact. However, mounted LSI systems are cumbersome and difficult to transport quickly in a clinical setting for which portability is essential in providing bedside patient care. To address this issue, we created a handheld LSI device using scientific grade components. To account for motion artifact of the LSI device used in a handheld setup, we incorporated a fiducial marker (FM) into our imaging protocol and determined the difference between highest and lowest speckle contrast values for the FM within each data set (Kbest and Kworst). The difference between Kbest and Kworst in mounted and handheld setups was 8% and 52%, respectively, thereby reinforcing the need for motion artifact quantification. When using a threshold FM speckle contrast value (KFM) to identify a subset of images with an acceptable level of motion artifact, mounted and handheld LSI measurements of speckle contrast of a flow region (KFLOW) in in vitro flow phantom experiments differed by 8%. Without the use of the FM, mounted and handheld KFLOW values differed by 20%. To further validate our handheld LSI device, we compared mounted and handheld data from an in vivo porcine burn model of superficial and full thickness burns. The speckle contrast within the burn region (KBURN) of the mounted and handheld LSI data differed by <4 % when accounting for motion artifact using the FM, which is less than the speckle contrast difference between superficial and full thickness burns. Collectively, our results suggest the potential of handheld LSI with an FM as a suitable alternative to mounted LSI, especially in challenging clinical settings with space limitations such as the intensive care unit.

Interaction between Posidonia oceanica meadows upper limit and hydrodynamics of four Mediterranean beaches

NASA Astrophysics Data System (ADS)

De Muro, Sandro; Ruju, Andrea; Buosi, Carla; Porta, Marco; Passarella, Marinella; Ibba, Angelo

2017-04-01

Posidonia oceanica meadow is considered to play an important role in the coastal geomorphology of Mediterranean beach systems. In particular, the importance of the meadow in protecting the coastline from erosion is well-recognized. Waves are attenuated by greater friction across seagrass meadows, which have the capacity to reduce water flow and therefore increase sediment deposition and accumulation as well as beach stability. The P. oceanica meadow upper limit usually occurs within the most dynamic zone of the beach system. Considering the great attention paid in the literature to the connection between the growth of P. oceanica and coastal hydrodynamics (Infantes et al., 2009; Vacchi et al., 2014; De Muro et al., 2016, 2017), this study aims at extending the previous work by investigating the combined influence of hydrodynamic parameters (e.g., wave-induced main currents and wave orbital velocity at the bottom) and different types of sea bottom (e.g., soft sediment, rocky substrates) on the position of the upper limit of the P. oceanica meadow. We applied this approach to 4 Mediterranean beach systems located on the Sardinian coastline (3 on the South and 1 on the North) and characterized by a wide range of orientations and incoming wave conditions. On these beaches, the extension of the P. oceanica meadows and the bathymetry have been obtained through detailed surveying campaigns and aerial photo analysis. In addition, high spatial resolution wave hydrodynamics have been reconstructed by running numerical simulations with Delft 3D. Offshore wave climate has been reconstructed by using measured datasets for those beaches that have a nearby buoy whose dataset is representative of the incoming wave conditions for that particular stretch of coast. Whereas, for those beaches with no availability of a representative measured dataset, wave climate has been analyzed from the NOAA hindcast dataset. From the whole range of incoming wave directions in deep waters, we retained for analysis only the most energetic sectors. Successively, we identify extreme wave conditions using a statistical approach. Delft 3D is used to propagate these wave conditions towards the shore and then reconstruct the main hydrodynamic patterns in order to study its effects on the extension of P. oceanica. Preliminary results show that in all investigated beach systems the meadow interruptions were found where intense (rip and longshore) currents occur as a result of all simulated storm directions; and the P. oceanica meadow leaves space for sand-dominated substrate. In conclusion, the new approach presented here is a useful tool to estimate the location of the P. oceanica upper limit induced by hydrodynamics and it has important consequences for coastal zone management, as P. oceanica meadow is protected by EU legislation including the Habitat Directive and the Water Framework Directive. References De Muro et al. (2016). Journal of Maps 12, 558-572. De Muro et al. (2017). Journal of Maps 13(2), 74-85. Infantes et al. (2009). Botanica Marina 52, 419-427. Vacchi et al. (2014). Marine Pollution Bulletin 83, 458-466.

Potential of the McMath-Pierce 1.6-Meter Solar Telescope for Speckle Interferometry

NASA Astrophysics Data System (ADS)

Harshaw, Richard; Jones, Gregory; Wiley, Edward; Boyce, Patrick; Branston, Detrick; Rowe, David; Genet, Russell

2015-09-01

We explored the aiming and tracking accuracy of the McMath-Pierce 1.6 m solar telescope at Kitt Peak National Observatory as part of an investigation of using this telescope for speckle interferometry of close visual double stars. Several slews of various lengths looked for hysteresis in the positioning system (we found none of significance) and concluded that the 1.6 m telescope would make a useful telescope for speckle interferometry.

Optically phase-locked electronic speckle pattern interferometer

NASA Astrophysics Data System (ADS)

Moran, Steven E.; Law, Robert; Craig, Peter N.; Goldberg, Warren M.

1987-02-01

The design, theory, operation, and characteristics of an optically phase-locked electronic speckle pattern interferometer (OPL-ESPI) are described. The OPL-ESPI system couples an optical phase-locked loop with an ESPI system to generate real-time equal Doppler speckle contours of moving objects from unstable sensor platforms. In addition, the optical phase-locked loop provides the basis for a new ESPI video signal processing technique which incorporates local oscillator phase shifting coupled with video sequential frame subtraction.

LASER APPLICATIONS AND OTHER TOPICS IN QUANTUM ELECTRONICS: Speckle suppression using a liquid-crystal cell

NASA Astrophysics Data System (ADS)

Andreev, A. L.; Kompanets, I. N.; Minchenko, M. V.; Pozhidaev, E. P.; Andreeva, T. B.

2008-12-01

A simple method for suppressing speckles in images produced by laser projectors is proposed. The coherence of the laser beam and, therefore, speckles can be destroyed when the beam passes through an electrooptical cell in which a special ferroelectric liquid crystal is used as a modulating medium. The effect is achieved due to the spatially inhomogeneous phase modulation of light when specially shaped bipolar electric pulses are applied to the cell.

Portable laser speckle perfusion imaging system based on digital signal processor.

PubMed

Tang, Xuejun; Feng, Nengyun; Sun, Xiaoli; Li, Pengcheng; Luo, Qingming

2010-12-01

The ability to monitor blood flow in vivo is of major importance in clinical diagnosis and in basic researches of life science. As a noninvasive full-field technique without the need of scanning, laser speckle contrast imaging (LSCI) is widely used to study blood flow with high spatial and temporal resolution. Current LSCI systems are based on personal computers for image processing with large size, which potentially limit the widespread clinical utility. The need for portable laser speckle contrast imaging system that does not compromise processing efficiency is crucial in clinical diagnosis. However, the processing of laser speckle contrast images is time-consuming due to the heavy calculation for enormous high-resolution image data. To address this problem, a portable laser speckle perfusion imaging system based on digital signal processor (DSP) and the algorithm which is suitable for DSP is described. With highly integrated DSP and the algorithm, we have markedly reduced the size and weight of the system as well as its energy consumption while preserving the high processing speed. In vivo experiments demonstrate that our portable laser speckle perfusion imaging system can obtain blood flow images at 25 frames per second with the resolution of 640 × 480 pixels. The portable and lightweight features make it capable of being adapted to a wide variety of application areas such as research laboratory, operating room, ambulance, and even disaster site.

Robust motion tracking based on adaptive speckle decorrelation analysis of OCT signal.

PubMed

Wang, Yuewen; Wang, Yahui; Akansu, Ali; Belfield, Kevin D; Hubbi, Basil; Liu, Xuan

2015-11-01

Speckle decorrelation analysis of optical coherence tomography (OCT) signal has been used in motion tracking. In our previous study, we demonstrated that cross-correlation coefficient (XCC) between Ascans had an explicit functional dependency on the magnitude of lateral displacement (δx). In this study, we evaluated the sensitivity of speckle motion tracking using the derivative of function XCC(δx) on variable δx. We demonstrated the magnitude of the derivative can be maximized. In other words, the sensitivity of OCT speckle tracking can be optimized by using signals with appropriate amount of decorrelation for XCC calculation. Based on this finding, we developed an adaptive speckle decorrelation analysis strategy to achieve motion tracking with optimized sensitivity. Briefly, we used subsequently acquired Ascans and Ascans obtained with larger time intervals to obtain multiple values of XCC and chose the XCC value that maximized motion tracking sensitivity for displacement calculation. Instantaneous motion speed can be calculated by dividing the obtained displacement with time interval between Ascans involved in XCC calculation. We implemented the above-described algorithm in real-time using graphic processing unit (GPU) and demonstrated its effectiveness in reconstructing distortion-free OCT images using data obtained from a manually scanned OCT probe. The adaptive speckle tracking method was validated in manually scanned OCT imaging, on phantom as well as in vivo skin tissue.

Robust motion tracking based on adaptive speckle decorrelation analysis of OCT signal

PubMed Central

Wang, Yuewen; Wang, Yahui; Akansu, Ali; Belfield, Kevin D.; Hubbi, Basil; Liu, Xuan

2015-01-01

Speckle decorrelation analysis of optical coherence tomography (OCT) signal has been used in motion tracking. In our previous study, we demonstrated that cross-correlation coefficient (XCC) between Ascans had an explicit functional dependency on the magnitude of lateral displacement (δx). In this study, we evaluated the sensitivity of speckle motion tracking using the derivative of function XCC(δx) on variable δx. We demonstrated the magnitude of the derivative can be maximized. In other words, the sensitivity of OCT speckle tracking can be optimized by using signals with appropriate amount of decorrelation for XCC calculation. Based on this finding, we developed an adaptive speckle decorrelation analysis strategy to achieve motion tracking with optimized sensitivity. Briefly, we used subsequently acquired Ascans and Ascans obtained with larger time intervals to obtain multiple values of XCC and chose the XCC value that maximized motion tracking sensitivity for displacement calculation. Instantaneous motion speed can be calculated by dividing the obtained displacement with time interval between Ascans involved in XCC calculation. We implemented the above-described algorithm in real-time using graphic processing unit (GPU) and demonstrated its effectiveness in reconstructing distortion-free OCT images using data obtained from a manually scanned OCT probe. The adaptive speckle tracking method was validated in manually scanned OCT imaging, on phantom as well as in vivo skin tissue. PMID:26600996

HYDROLOGY OF CENTRAL GREAT BASIN MEADOW ECOSYSTEMS – EFFECTS OF STREAM INCISION

EPA Science Inventory

Riparian wet meadow complexes in the mountains of the central Great Basin are scarce, ecologically important systems that are threatened by stream incision. Our interdisciplinary group has investigated 1) the interrelationships of geomorphology, hydrology, and vegetation; and 2) ...

66. BIG MEADOWS. VIEW OF PARKING AREA AT THE GATED ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

66. BIG MEADOWS. VIEW OF PARKING AREA AT THE GATED ENTRANCE TO RAPIDAN FIRE ROAD, THE ACCESS ROAD TO CAMP HOOVER. LOOKING SOUTH, MILE 51.3. - Skyline Drive, From Front Royal, VA to Rockfish Gap, VA , Luray, Page County, VA

Thermo-mechanical toner transfer for high-quality digital image correlation speckle patterns

NASA Astrophysics Data System (ADS)

Mazzoleni, Paolo; Zappa, Emanuele; Matta, Fabio; Sutton, Michael A.

2015-12-01

The accuracy and spatial resolution of full-field deformation measurements performed through digital image correlation are greatly affected by the frequency content of the speckle pattern, which can be effectively controlled using particles with well-defined and consistent shape, size and spacing. This paper introduces a novel toner-transfer technique to impress a well-defined and repeatable speckle pattern on plane and curved surfaces of metallic and cement composite specimens. The speckle pattern is numerically designed, printed on paper using a standard laser printer, and transferred onto the measurement surface via a thermo-mechanical process. The tuning procedure to compensate for the difference between designed and toner-transferred actual speckle size is presented. Based on this evidence, the applicability of the technique is discussed with respect to surface material, dimensions and geometry. Proof of concept of the proposed toner-transfer technique is then demonstrated for the case of a quenched and partitioned welded steel plate subjected to uniaxial tensile loading, and for an aluminum plate exposed to temperatures up to 70% of the melting point of aluminum and past the melting point of typical printer toner powder.

Speckle reduction in optical coherence tomography images based on wave atoms

PubMed Central

Du, Yongzhao; Liu, Gangjun; Feng, Guoying; Chen, Zhongping

2014-01-01

Abstract. Optical coherence tomography (OCT) is an emerging noninvasive imaging technique, which is based on low-coherence interferometry. OCT images suffer from speckle noise, which reduces image contrast. A shrinkage filter based on wave atoms transform is proposed for speckle reduction in OCT images. Wave atoms transform is a new multiscale geometric analysis tool that offers sparser expansion and better representation for images containing oscillatory patterns and textures than other traditional transforms, such as wavelet and curvelet transforms. Cycle spinning-based technology is introduced to avoid visual artifacts, such as Gibbs-like phenomenon, and to develop a translation invariant wave atoms denoising scheme. The speckle suppression degree in the denoised images is controlled by an adjustable parameter that determines the threshold in the wave atoms domain. The experimental results show that the proposed method can effectively remove the speckle noise and improve the OCT image quality. The signal-to-noise ratio, contrast-to-noise ratio, average equivalent number of looks, and cross-correlation (XCOR) values are obtained, and the results are also compared with the wavelet and curvelet thresholding techniques. PMID:24825507

Speckle noise reduction technique for Lidar echo signal based on self-adaptive pulse-matching independent component analysis

NASA Astrophysics Data System (ADS)

Xu, Fan; Wang, Jiaxing; Zhu, Daiyin; Tu, Qi

2018-04-01

Speckle noise has always been a particularly tricky problem in improving the ranging capability and accuracy of Lidar system especially in harsh environment. Currently, effective speckle de-noising techniques are extremely scarce and should be further developed. In this study, a speckle noise reduction technique has been proposed based on independent component analysis (ICA). Since normally few changes happen in the shape of laser pulse itself, the authors employed the laser source as a reference pulse and executed the ICA decomposition to find the optimal matching position. In order to achieve the self-adaptability of algorithm, local Mean Square Error (MSE) has been defined as an appropriate criterion for investigating the iteration results. The obtained experimental results demonstrated that the self-adaptive pulse-matching ICA (PM-ICA) method could effectively decrease the speckle noise and recover the useful Lidar echo signal component with high quality. Especially, the proposed method achieves 4 dB more improvement of signal-to-noise ratio (SNR) than a traditional homomorphic wavelet method.

Speckle-based three-dimensional velocity measurement using spatial filtering velocimetry.

PubMed

Iversen, Theis F Q; Jakobsen, Michael L; Hanson, Steen G

2011-04-10

We present an optical method for measuring the real-time three-dimensional (3D) translational velocity of a diffusely scattering rigid object observed through an imaging system. The method is based on a combination of the motion of random speckle patterns and regular fringe patterns. The speckle pattern is formed in the observation plane of the imaging system due to reflection from an area of the object illuminated by a coherent light source. The speckle pattern translates in response to in-plane translation of the object, and the presence of an angular offset reference wave coinciding with the speckle pattern in the observation plane gives rise to interference, resulting in a fringe pattern that translates in response to the out-of-plane translation of the object. Numerical calculations are performed to evaluate the dynamic properties of the intensity distribution and the response of realistic spatial filters designed to measure the three components of the object's translational velocity. Furthermore, experimental data are presented that demonstrate full 3D velocity measurement. © 2011 Optical Society of America

Real-time blood flow visualization using the graphics processing unit

NASA Astrophysics Data System (ADS)

Yang, Owen; Cuccia, David; Choi, Bernard

2011-01-01

Laser speckle imaging (LSI) is a technique in which coherent light incident on a surface produces a reflected speckle pattern that is related to the underlying movement of optical scatterers, such as red blood cells, indicating blood flow. Image-processing algorithms can be applied to produce speckle flow index (SFI) maps of relative blood flow. We present a novel algorithm that employs the NVIDIA Compute Unified Device Architecture (CUDA) platform to perform laser speckle image processing on the graphics processing unit. Software written in C was integrated with CUDA and integrated into a LabVIEW Virtual Instrument (VI) that is interfaced with a monochrome CCD camera able to acquire high-resolution raw speckle images at nearly 10 fps. With the CUDA code integrated into the LabVIEW VI, the processing and display of SFI images were performed also at ~10 fps. We present three video examples depicting real-time flow imaging during a reactive hyperemia maneuver, with fluid flow through an in vitro phantom, and a demonstration of real-time LSI during laser surgery of a port wine stain birthmark.

Real-time blood flow visualization using the graphics processing unit

PubMed Central

Yang, Owen; Cuccia, David; Choi, Bernard

2011-01-01

Laser speckle imaging (LSI) is a technique in which coherent light incident on a surface produces a reflected speckle pattern that is related to the underlying movement of optical scatterers, such as red blood cells, indicating blood flow. Image-processing algorithms can be applied to produce speckle flow index (SFI) maps of relative blood flow. We present a novel algorithm that employs the NVIDIA Compute Unified Device Architecture (CUDA) platform to perform laser speckle image processing on the graphics processing unit. Software written in C was integrated with CUDA and integrated into a LabVIEW Virtual Instrument (VI) that is interfaced with a monochrome CCD camera able to acquire high-resolution raw speckle images at nearly 10 fps. With the CUDA code integrated into the LabVIEW VI, the processing and display of SFI images were performed also at ∼10 fps. We present three video examples depicting real-time flow imaging during a reactive hyperemia maneuver, with fluid flow through an in vitro phantom, and a demonstration of real-time LSI during laser surgery of a port wine stain birthmark. PMID:21280915

Modeling the depth-sectioning effect in reflection-mode dynamic speckle-field interferometric microscopy

PubMed Central

Zhou, Renjie; Jin, Di; Hosseini, Poorya; Singh, Vijay Raj; Kim, Yang-hyo; Kuang, Cuifang; Dasari, Ramachandra R.; Yaqoob, Zahid; So, Peter T. C.

2017-01-01

Unlike most optical coherence microscopy (OCM) systems, dynamic speckle-field interferometric microscopy (DSIM) achieves depth sectioning through the spatial-coherence gating effect. Under high numerical aperture (NA) speckle-field illumination, our previous experiments have demonstrated less than 1 μm depth resolution in reflection-mode DSIM, while doubling the diffraction limited resolution as under structured illumination. However, there has not been a physical model to rigorously describe the speckle imaging process, in particular explaining the sectioning effect under high illumination and imaging NA settings in DSIM. In this paper, we develop such a model based on the diffraction tomography theory and the speckle statistics. Using this model, we calculate the system response function, which is used to further obtain the depth resolution limit in reflection-mode DSIM. Theoretically calculated depth resolution limit is in an excellent agreement with experiment results. We envision that our physical model will not only help in understanding the imaging process in DSIM, but also enable better designing such systems for depth-resolved measurements in biological cells and tissues. PMID:28085800