Ground beetle (Coleoptera, Carabidae) assemblages inhabiting Scots pine stands of Puszcza Piska Forest: six-year responses to a tornado impact.

PubMed

Skłodowski, Jarosław; Garbalińska, Paulina

2011-01-01

Ground beetle assemblages were studied during 2003-08 in the Pisz Forest by comparing stands disturbed by a tornado to undisturbed control stands. The following exploratory questions were put forward. (1) How do the carabid assemblages change during six years following the tornado impact? (2) Does the carabid assemblage recovery begin during the six first post-tornado years? To assess the state of carabid assemblages we used two indices: the MIB (Mean Individual Biomass) and the SPC (Sum of Progressive Characteristics). Carabid assemblages in the disturbed and in the control stands, as expressed by these two indices, were compared using the length of a regression distance (sample distance in a MIB:SPC coordinate system). A cluster analysis revealed that the assemblages of the disturbed and the control stands were different. The tornado-impacted stands produced lower carabid catch rates, but species richness was significantly higher there than in the control stands. They hosted lower proportions of individuals of European species, of large zoophages, and of forest and brachypterous species, than the control stands. The observed reduction in SPC and MIB, and an increase in the regression distances may indicate that the carabid assemblages had not started to recover from the tornado-caused disturbance. Carabid assemblages apparently responded to the tornado in two steps. Firstly, the first three years were characterized by moderate decreases of index values. Secondly, from the fourth to the sixth year after the tornado, many observed changes became magnified. We did not observe clear signals of the recovery of forest carabid assemblages during the six follow-up years.

Ground beetle (Coleoptera, Carabidae) assemblages inhabiting Scots pine stands of Puszcza Piska Forest: six-year responses to a tornado impact

PubMed Central

Skłodowski, Jarosław; Garbalińska, Paulina

2011-01-01

Abstract Ground beetle assemblages were studied during 2003-08 in the Pisz Forest by comparing stands disturbed by a tornado to undisturbed control stands. The following exploratory questions were put forward. (1) How do the carabid assemblages change during six years following the tornado impact? (2) Does the carabid assemblage recovery begin during the six first post-tornado years? To assess the state of carabid assemblages we used two indices: the MIB (Mean Individual Biomass) and the SPC (Sum of Progressive Characteristics). Carabid assemblages in the disturbed and in the control stands, as expressed by these two indices, were compared using the length of a regression distance (sample distance in a MIB:SPC coordinate system). A cluster analysis revealed that the assemblages of the disturbed and the control stands were different. The tornado-impacted stands produced lower carabid catch rates, but species richness was significantly higher there than in the control stands. They hosted lower proportions of individuals of European species, of large zoophages, and of forest and brachypterous species, than the control stands. The observed reduction in SPC and MIB, and an increase in the regression distances may indicate that the carabid assemblages had not started to recover from the tornado-caused disturbance. Carabid assemblages apparently responded to the tornado in two steps. Firstly, the first three years were characterized by moderate decreases of index values. Secondly, from the fourth to the sixth year after the tornado, many observed changes became magnified. We did not observe clear signals of the recovery of forest carabid assemblages during the six follow-up years. PMID:21738422

Molecular characterization of Giardia lamblia in children less than 5 years of age with diarrhoea attending the Bengo General Hospital, Angola

PubMed Central

Gasparinho, Carolina; Ferreira, Filipa S; Mayer, António Carlos; Mirante, Maria Clara; Vaz Nery, Susana; Santos-Reis, Ana; Portugal-Calisto, Daniela; Brito, Miguel

2017-01-01

Abstract Background Giardia lamblia is a pathogenic intestinal protozoan with high prevalence in developing countries, especially among children. Molecular characterization has revealed the existence of eight assemblages, with A and B being more commonly described in human infections. Despite its importance, to our knowledge this is the first published molecular analysis of G. lamblia assemblages in Angola. Methods The present study aimed to identify the assemblages of G. lamblia in children with acute diarrhoea presenting at the Bengo General Hospital, Angola. A stool sample was collected and microscopy and immunochromatographic tests were used. DNA was extracted and assemblage determination was performed through amplification of the gene fragment ssu-rRNA (175 bp) and β-giardin (511 bp) through polymerase chain reaction and DNA sequencing. Results Of the 16 stool samples screened, 12 were successfully sequenced. Eleven isolates were assigned to assemblage B and one to assemblage A. Subassemblage determination was not possible for assemblage B, while the single isolate assigned to assemblage A was identified as belonging to subassemblage A3. Conclusion This study provides information about G. lamblia assemblages in Bengo Province, Angola and may contribute as a first step in understanding the molecular epidemiology of this protozoan in the country. GenBank accession numbers for the ssur-RNA gene: MF479750, MF479751, MF479752, MF479753, MF479754, MF479755, MF479756, MF479757, MF479758, MF479759, MF479760, MF479761. GenBank accession numbers for the β-giardin gene: MF565378, MF565379, MF565380, MF565381. PMID:29438541

Fault-related fold styles and progressions in fold-thrust belts: Insights from sandbox modeling

NASA Astrophysics Data System (ADS)

Yan, Dan-Ping; Xu, Yan-Bo; Dong, Zhou-Bin; Qiu, Liang; Zhang, Sen; Wells, Michael

2016-03-01

Fault-related folds of variable structural styles and assemblages commonly coexist in orogenic belts with competent-incompetent interlayered sequences. Despite their commonality, the kinematic evolution of these structural styles and assemblages are often loosely constrained because multiple solutions exist in their structural progression during tectonic restoration. We use a sandbox modeling instrument with a particle image velocimetry monitor to test four designed sandbox models with multilayer competent-incompetent materials. Test results reveal that decollement folds initiate along selected incompetent layers with decreasing velocity difference and constant vorticity difference between the hanging wall and footwall of the initial fault tips. The decollement folds are progressively converted to fault-propagation folds and fault-bend folds through development of fault ramps breaking across competent layers and are followed by propagation into fault flats within an upper incompetent layer. Thick-skinned thrust is produced by initiating a decollement fault within the metamorphic basement. Progressive thrusting and uplifting of the thick-skinned thrust trigger initiation of the uppermost incompetent decollement with formation of a decollement fold and subsequent converting to fault-propagation and fault-bend folds, which combine together to form imbricate thrust. Breakouts at the base of the early formed fault ramps along the lowest incompetent layers, which may correspond to basement-cover contacts, domes the upmost decollement and imbricate thrusts to form passive roof duplexes and constitute the thin-skinned thrust belt. Structural styles and assemblages in each of tectonic stages are similar to that in the representative orogenic belts in the South China, Southern Appalachians, and Alpine orogenic belts.

Metamorphic mineral assemblages of slightly calcic pelitic rocks in and around the Taconic Allochthon, southwestern Massachusetts and adjacent Connecticut and New York

USGS Publications Warehouse

Zen, E-an

1981-01-01

The mineral assemblages from metamorphosed slightly calcic pelitic rocks of the Taconic Range in southwestern Massachusetts and adjacent areas of Connecticut and New York were studied petrographically and chemically. These rocks vary in metamorphic grade from those below the chloritoid zone through the chloritoid and garnet zones into the kyanite-staurolite zone. Microprobe data on the ferromagnesian minerals show that the sequence of increasing Fe/ (Fe+Mg) value is, from the lowest, chlorite, biotite, hornblende, chloritoid, staurolite, garnet. Hornblende, epidote, garnet, and plagioclase are the most common minerals that carry significant calcium. Biotite is persistently deficient in alkali but is abnormally rich in octahedral aluminum to such an extent that the overall charge balance can be ascribed to an AI=K+ (Fe,Mg) diadochy. Muscovite contains small though persistent amounts of iron and magnesium in octahedral positions but has a variable K/Na ratio, which is potentially useful as a geothermometer. One low-grade muscovite is highly phengitic, but the white micas in rocks from metamorphic grades higher than chloritoid zone do not contain significant phengite components. Chlorite is persistently high in aluminum and so its ratio of divalent ions to aluminum is approximately that of garnet. Many garnets show pronounced zoning in manganese and less pronounced zoning in calcium. Garnet coexisting with hornblende contains a high proportion of the grossularitic component. The calcium content is significant in all the analyzed garnets, except those from a cummingtonite-bearing sample that is free of muscovite. This suggests that in slightly calcic pelitic rocks, calcium-free garnet cannot coexist with muscovite. Most of the mineral assemblages formed in the presence of excess quartz and muscovite. The phase-petrologic analysis, made with the aid of an eight-phase multisystematic model, shows the following major points: 1. Chloritoid and staurolite coexist in a definite interval of prograde metamorphism. 2. Biotite-chloritoid does not constitute an alternative assemblage to garnet-chlorite-muscovite, because the former combination is found predominantly in the presence of the latter combination. Because the garnet contains lime, all five phases are stable together in lowlime pelitic rocks. 3. The first appearance of staurolite in the area does not correspond to the reaction leading to the first intrinsic stable existence of this phase. Inasmuch as the first appearanc,e of staurolite is always in chlorite-bearing as semblages, I suggest that the mapped staurolite zone marker corresponds to a reaction whereby staurolitechlorite becomes stable. The probable lower grade chemical equivalent, for example, chloritoid-aluminum silicate, however, has not been found in the area of study. Several staurolite-forming reactions discussed in the literature are ruled out because of the relative siderophility of the minerals. A second staurolite isograd involves the reaction, chloritoid+chlorite+muscovite= staurolite+biotite. A third isograd involves staurolite+ chlorite=biotite+kyanite; this reaction is postulated on the basis of the observed assemblage biotite-kyanitesta urolite-garnet-muscoviteplagioclase-quartzilmenite. 4. In low-grade rocks, epidote is stable considerably before the first appearance of chloritoid. The nature of the high-aluminum phase in low-grade rocks that leads to the formation of chloritoid remains obscure. The epidote is always rich in ferric iron (pistacite content of about 1/ 4 to 1/3). Garnet-bearing assemblages (with or without epidote) are formed next as metamorphic grade increases. The next more calcium-rich silicate is hornblende, and despite the meager data on assemblages that include hornblende, the first intrinsic appearance of this phase has probably been recorded. At highstaurolite grade, the most calcium-rich assemblage in pelitic rocks is hornblende-garnet-biotite-plagioclase (bytownit

Giardia and Cryptosporidium species and genotypes in coyotes (Canis latrans).

PubMed

Trout, James M; Santín, Mónica; Fayer, Ronald

2006-06-01

Feces and duodenal scrapings were collected from 22 coyotes (Canis latrans) killed in managed hunts in northeastern Pennsylvania. Polymerase chain reaction (PCR) methods were used to detect Giardia and Cryptosporidium spp. PCR-amplified fragments of Giardia and Cryptosporidium spp. SSU-rRNA genes were subjected to DNA sequence analysis for species/genotype determination. Seven coyotes (32%) were positive for G. duodenalis: three assemblage C, three assemblage D, and one assemblage B. Six coyotes (27%) were positive for Cryptosporidium spp. One isolate shared 99.7% homology with C. muris, whereas five others (23%) shared 100% homology with C. canis, coyote genotype. This is the first report on multiple genotypes of Giardia spp. in coyotes and on the prevalence of Cryptosporidium spp. genotypes in coyotes.

The Still Bay and Howiesons Poort at Sibudu and Blombos: Understanding Middle Stone Age Technologies.

PubMed

Soriano, Sylvain; Villa, Paola; Delagnes, Anne; Degano, Ilaria; Pollarolo, Luca; Lucejko, Jeannette J; Henshilwood, Christopher; Wadley, Lyn

2015-01-01

The classification of archaeological assemblages in the Middle Stone Age of South Africa in terms of diversity and temporal continuity has significant implications with respect to recent cultural evolutionary models which propose either gradual accumulation or discontinuous, episodic processes for the emergence and diffusion of cultural traits. We present the results of a systematic technological and typological analysis of the Still Bay assemblages from Sibudu and Blombos. A similar approach is used in the analysis of the Howiesons Poort (HP) assemblages from Sibudu seen in comparison with broadly contemporaneous assemblages from Rose Cottage and Klasies River Cave 1A. Using our own and published data from other sites we report on the diversity between stone artifact assemblages and discuss to what extent they can be grouped into homogeneous lithic sets. The gradual evolution of debitage techniques within the Howiesons Poort sequence with a progressive abandonment of the HP technological style argues against the saltational model for its disappearance while the technological differences between the Sibudu and Blombos Still Bay artifacts considerably weaken an interpretation of similarities between the assemblages and their grouping into the same cultural unit. Limited sampling of a fragmented record may explain why simple models of cultural evolution do not seem to apply to a complex reality.

The Still Bay and Howiesons Poort at Sibudu and Blombos: Understanding Middle Stone Age Technologies

PubMed Central

Soriano, Sylvain; Villa, Paola; Delagnes, Anne; Degano, Ilaria; Pollarolo, Luca; Lucejko, Jeannette J.; Henshilwood, Christopher; Wadley, Lyn

2015-01-01

The classification of archaeological assemblages in the Middle Stone Age of South Africa in terms of diversity and temporal continuity has significant implications with respect to recent cultural evolutionary models which propose either gradual accumulation or discontinuous, episodic processes for the emergence and diffusion of cultural traits. We present the results of a systematic technological and typological analysis of the Still Bay assemblages from Sibudu and Blombos. A similar approach is used in the analysis of the Howiesons Poort (HP) assemblages from Sibudu seen in comparison with broadly contemporaneous assemblages from Rose Cottage and Klasies River Cave 1A. Using our own and published data from other sites we report on the diversity between stone artifact assemblages and discuss to what extent they can be grouped into homogeneous lithic sets. The gradual evolution of debitage techniques within the Howiesons Poort sequence with a progressive abandonment of the HP technological style argues against the saltational model for its disappearance while the technological differences between the Sibudu and Blombos Still Bay artifacts considerably weaken an interpretation of similarities between the assemblages and their grouping into the same cultural unit. Limited sampling of a fragmented record may explain why simple models of cultural evolution do not seem to apply to a complex reality. PMID:26161665

The zoonotic potential of Giardia intestinalis assemblage E in rural settings.

PubMed

Abdel-Moein, Khaled A; Saeed, Hossam

2016-08-01

Giardiasis is a globally re-emerging protozoan disease with veterinary and public health implications. The current study was carried out to investigate the zoonotic potential of livestock-specific assemblage E in rural settings. For this purpose, a total of 40 microscopically positive Giardia stool samples from children with gastrointestinal complaints with or without diarrhea were enrolled in the study as well as fecal samples from 46 diarrheic cattle (18 dairy cows and 28 calves). Animal samples were examined by sedimentation method to identify Giardia spp., and then, all Giardia positive samples from human and animals were processed for molecular detection of livestock-specific assemblage E through amplification of assemblage-specific triosephosphate isomerase (tpi) gene using nested polymerase chain reaction (PCR). The results of the study revealed high unexpected occurrence of assemblage E among human samples (62.5 %), whereas the distribution among patients with diarrhea and those without was 42.1 and 81 %, respectively. On the other hand, the prevalence of Giardia spp. among diarrheic dairy cattle was (8.7 %), while only calves yielded positive results (14.3 %) and all bovine Giardia spp. were genetically classified as Giardia intestinalis assemblage E. Moreover, DNA sequencing of randomly selected one positive human sample and another bovine one revealed 100 and 99 % identity with assemblage E tpi gene sequences available at GenBank after BLAST analysis. In conclusion, the current study highlights the wide dissemination of livestock-specific assemblage E among humans in rural areas, and thus, zoonotic transmission cycle should not be discounted during the control of giardiasis in such settings.

A Multiplex PCR for Simultaneous Detection of Three Zoonotic Parasites Ancylostoma ceylanicum, A. caninum, and Giardia lamblia Assemblage A

PubMed Central

Hu, Wei; Wu, Sheng; Yu, Xingang; Abullahi, Auwalu Yusuf; Song, Meiran; Tan, Liping; Wang, Zhen; Jiang, Biao; Li, Guoqing

2015-01-01

Ancylostoma ceylanicum, A. caninum, and Giardia lamblia assemblage A are common intestinal parasites of dogs and cats; they can also infect humans, causing parasitic zoonoses. In this study, a multiplex PCR method was developed for simultaneous identification and detection of those three zoonotic parasites. Three pairs of specific primers were designed based on ITS sequence of A. ceylanicum and A. caninum and TPI gene of G. lamblia available in the GenBank. The multiplex PCR reaction system was established by optimizing the reaction condition, and a series of tests on the sensitivity, specificity, and clinical application were also conducted. Results showed that three target fragments were amplified specifically; the detection limit was 10 eggs for both A. ceylanicum and A. caninum, 72 pg DNA for G. lamblia. Of 112 clinical fecal samples, 34.8% and 17.8% samples were positive for A. caninum and A. ceylanicum, respectively, while only 2.7% samples were positive for G. lamblia assemblage A. It is concluded that the established multiplex PCR assay is a convenient, rapid, cost-effective, and high-efficiency method for molecular detection and epidemiological investigation of three zoonotic parasites. PMID:26447336

The potential for prebiotic synthesis in hydrothermal systems. [Abstract only

NASA Technical Reports Server (NTRS)

Ferris, James P.

1994-01-01

Contemporary hydrothermal systems provide a reducing environment where organic compounds are formed and may react to generate the molecules used in the first living systems. The organic compounds percolate through mineral assemblages at a variety of temperatures so the proposed synthetic reactions are driven by heat and catalyzed by minerals (Ferris, 1992). Some examples of potential prebiotic reactions are discussed.

Interpreting Assemblages with Titanite (Sphene): It Does not have to be Greek to You.

NASA Technical Reports Server (NTRS)

Xirouchakis, Dimitrios M.; Lindsley, Donald H.; McKay, Gordon A. (Technical Monitor)

2000-01-01

Assemblages with titanite, pyroxene(s), olivine, ilmenite, magnetite, and quartz can be used to constrain the intensive and compositional variables that operate during crystallization. Such assemblages are relatively rare in metamorphic rocks, but they are more common in igneous rocks and more frequently reported in plutonic than volcanic rocks. We used the program QUILF, enhanced with thermodynamic data for titanite, to compute stable reactions among titanite (CaTiOSiO4), Fe-Mg-Ti ilmenite and magnetite (hereafter ilmenite and magnetite), Ca-Mg-Fe pyroxenes and olivine, and quartz, and to evaluate some of the factors that control titanite stability. Calculations at 1, 3, and 6 Kbar and 650, 850, 1100 0 C, in the system CaO - MgO - FeO Fe2O3 - TiO2 - SiO2, suggest that the reactions: Augitc + Ilmenite = Titanite + Magnetite + Quartz and Augite + Ilmenite + Quartz = Titanite + Orthopyroxene, impose well defined fugacity of O2, alpha(sub SiO2), , and compositional restrictions to the assemblages: (1) Titanite + Magnetite + Quartz, (2) Titanite + Orthopyroxene, (3) Augite + Ilmenite, and consequently titanite stability. From our calculations in this system we can draw the following general conclusions: (1) The assemblage Titanite + Magnetite + Quartz is always a good indicator of relatively high fugacity of O2, and it is likely more common in relatively iron-rich bulk compositions and for decreasing temperature and pressure conditions. (2) At high temperatures (>= 650 C) titanite is not stable in quartz-saturated rocks that contain the assemblage Orthopyroxene + Augite + Ilmenite + Magnetite. (3) In quartz-saturated rocks the coexistence of titanite and magnetite with either orthopyroxene or olivine requires a confluence of conditions relating bulk composition, fugacity of O2, and slow cooling. Thus, such assemblages must be rare. (4) Regardless of T and fugacity of O2 conditions, and bulk-composition, titanite is not stable in quartz-absent rocks that contain Olivine + Orthopyroxene + Augite + Ilmenite + Magnetite. Decreasing temperature and pressure conditions appear to favor titanite crystallization, thus, it is not unsurprising that titanite is frequently observed in slowly cooled rocks, albeit, in association with amphibole. We argue that the titanite + amphibole association is likely favored by high water activity, regardless of oxygen fugacity. Because water activity increases during crystallization of a pluton, the association titanite + amphibole, and consequently titanite, is likely to be more common in plutonic rocks than in volcanic rocks.

Modeling the exhumation path of partially melted ultrahigh-pressure metapelites, North-East Greenland Caledonides

NASA Astrophysics Data System (ADS)

Lang, Helen M.; Gilotti, Jane A.

2015-06-01

Pseudosection modeling constrains the pressure-temperature (P-T) exhumation path of partially melted ultrahigh-pressure (UHP) metapelites exposed in the North-East Greenland UHP terrane. A robust peak P and T estimate of 3.6 GPa and 970 °C based on mineral assemblages in nearby kyanite eclogites is the starting point for the P-T path. Although the peak assemblage for the metapelite is not preserved, the calculated modeled peak assemblage contained substantial clinopyroxene, garnet, phengite, K-feldspar and coesite with minor kyanite and rutile. Combining the pseudosection and observed textures, the decompression path crosses the coesite-quartz transition before reaching the dry phengite dehydration melting reaction where phengite is abruptly consumed. In the range of 2.5 to 2.2 GPa, clinopyroxene is completely consumed and garnet grows to its maximum volume and grossular content, matching the high grossular rims of relict megacrysts. Plagioclase joins the assemblage and the pseudosection predicts up to 12-13 vol.% melt in the supersolidus assemblage, which contained garnet, liquid, K-feldspar, plagioclase, kyanite, quartz and rutile. At this stage, the steep decompression path flattened out and became nearly isobaric. The melt crystallization assemblage that formed when the path crossed the solidus with decreasing temperature contains phengite, garnet, biotite, 2 feldspars, kyanite, quartz and rutile. Therefore, the path must have intersected the solidus at approximately 1.2 GPa, 825 °C. The pseudosection predicts that garnet is consumed on the cooling path, but little evidence of late garnet consumption or other retrograde effects is observed. This may be due to partial melt loss from the rock. Isochemical PT-n and PT-X sections calculated along the P-T path display changes in mineral assemblage and composition that are consistent with preserved assemblages.

Comparison of three preservation techniques for slowing dissolution of calcareous nannofossils in organic rich sediments

USGS Publications Warehouse

Seefelt, Ellen L.; Self-Trail, Jean; Schultz, Arthur P.

2015-01-01

In an attempt to halt or reduce dissolution of calcareous nannofossils in organic and/or pyrite-rich sediments, three different methods of short-term storage preservation were tested for efficacy: vacuum packing, argon gas replacement, and buffered water. Abundance counts of calcareous nannofossil assemblages over a six month period showed that none of the three preservation methods were consistently effective in reducing assemblage loss due to dissolution. In most cases, the control slides made at the drill site had more abundant calcareous nannofossil assemblages than those slides made from sediments stored via vacuum packing, argon gas replacement, or buffered water. Thin section and XRD analyses showed that in most cases, <1% pyrite was needed to drive the oxidation-reduction reaction that resulted in dissolution, even in carbonate-rich sediments.

Chemistry of atmosphere-surface interactions on Venus and Mars

NASA Astrophysics Data System (ADS)

Fegley, Bruce, Jr.; Treiman, Allan H.

Earth-based, earth-orbital, and spacecraft observational data are used in the present evaluation of Venus atmosphere-surface interactions to quantitatively characterize the reactions between C, H, S, Cl, F, and N gases and plausible surface minerals. Calculation results are used to predict stable minerals and mineral assemblages on the Venus surface, in order to ascertain which (if any) of the atmospheric gases are buffeted by mineral assemblages. Chemical equilibrium calculations using extant thermodynamic data on scapolite minerals predict that carbonate-bearing scapolite and sulfate meionite are unstable on the surface of Venus, while chloride-bearing scapolite is stable.

An AEM-TEM study of weathering and diagenesis, Abert Lake, Oregon. (1) Weathering reactions in the volcanics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Banfield, J.F.; Veblen, D.R.; Jones, B.F.

1991-10-01

Abert Lake in south-central Oregon provides a site suitable for the study of sequential weathering and diagenetic events. In this first of two papers, transmission electron microscopy was used to characterize the igneous mineralogy, subsolidus alteration assemblage, and the structural and chemical aspects of silicate weathering reactions that occur in the volcanic rocks that outcrop around the lake. Olivine and pyroxene replacement occurred topotactically, whereas feldspar and glass alteration produced randomly oriented smectite in channels and cavities. The tetrahedral, octahedral, and interlayer compositions of the weathering products, largely dioctahedral smectites, varied with primary mineral composition, rock type, and as themore » result of addition of elements released from adjacent reaction sites. The variability within and between the smectite assemblages highlights the microenvironmental diversity, fluctuating redox conditions, and variable solution chemistry associated with mineral weathering reactions in the surficial environment. Late-stage exhalative and aqueous alteration of the volcanics redistributed many components and formed a variety of alkali and alkali-earth carbonate, chloride, sulfate, and fluoride minerals in vugs and cracks. Overall, substantial Mg, Si, Na, Ca, and K are released by weathering reactions that include the almost complete destruction of the Mg-smectite that initially replaced olivine. The leaching of these elements from the volcanics provides an important source of these constituents in the lake water. The nature of subsequent diagenetic reactions resulting from the interaction between the materials transported to the lake and the solution will be described in part.« less

Leaching of S, Cu, and Fe from disseminated Ni-(Fe)-(Cu) sulphide ore during serpentinization of dunite host rocks at Mount Keith, Agnew-Wiluna belt, Western Australia

NASA Astrophysics Data System (ADS)

Gole, Martin J.

2014-10-01

Komatiite-hosted disseminated Ni sulphide deposits in the Agnew-Wiluna greenstone belt occur both above and below the olivine isograd that was imposed on the greenstone sequence during the M2 metamorphic/deformation event. Deposits in the northern and central part of the belt and that are located below the isograd (Mount Keith, Honeymoon Well and West Jordan) have complex sulphide mineralogy and strongly zoned sulphide assemblages. These range from least-altered assemblages of pentlandite-pyrrhotite-chalcopyrite±pyrite to altered assemblages of pentlandite±chalcopyrite, pentlandite-heazlewoodite (or millerite), heazlewoodite (or millerite), and rarely to heazlewoodite-native Ni. Deposits to the south and that are above of the olivine isograd (Six Mile, Goliath North) are dominated by less complex magmatic assemblages with a lower proportion of weakly altered pentlandite±chalcopyrite assemblages. More altered assemblages are uncommon in these deposits and occur as isolated patches around the periphery of the deposits. The sulphide zonation is reflected by whole-rock reductions in S, Cu, Fe and Zn, whereas Ni, Pt and Pd and, with some exceptions, Co are conservative. The leaching of S, Cu, Fe and Zn from sulphide assemblages and the whole rock was initiated by highly reduced conditions that were produced during low fluid/rock ratio serpentinization. Consumption of H2O resulted in Cl, a component of the fluid, being concentrated sufficiently to stabilise iowaite as part of lizardite-rich assemblages. Once the rate of olivine hydration reactions declined and during and after expansion and associated fracturing of the ultramafic sequence allowed higher fluid access, a more fluid-dominated environment formed and new carbonate-bearing fluid gained access to varying extents to the ultramafic rock sequence. This drove Cl from iowaite (to form pyroaurite) and caused the sulphide assemblages to be altered from the original magmatic assemblages and compositions to those stable at the prevailing fO2 and fS2 conditions. Mass transfer was made possible via metal chloride complexes and H2S with fluids driven by deformation associated with the M2 metamorphism. Disseminated deposits in higher metamorphic grade terrains where olivine was stable during peak metamorphism did not undergo the metasomatism seen in the deposits in areas of lower metamorphic grade. Some minor leaching of S, Fe and Cu occurred around the periphery of the deposits during early, pre-M2 peak metamorphism, but once olivine stability was reached the driving force for the series of leaching reactions was exhausted. The effect of this process on the original magmatic sulphides is to induce significant variability in texture, mineralogy and bulk composition and to markedly reduce the Fe and S contents of the sulphide fraction (in extreme cases to zero for both elements), and to reduce the volume of the sulphide fraction per unit of Ni. These changes impact unfavourably on Ni sulphide recoveries and metallurgical characteristics of these Ni ores.

Fish assemblages in oxbow lakes relative to connectivity with the Mississippi River

USGS Publications Warehouse

Miranda, L.E.

2005-01-01

The alluvial valley of the lower Mississippi River contains hundreds of fluvial lakes that are periodically connected to the river during high water, although the frequency, duration, and timing of the connections vary. To help design plans to restore and preserve fish assemblages in these alluvial lakes, this investigation tested whether predictable patterns in lake fish assemblages were linked to the level of connectivity with the river. Results suggested that connectivity played an important role in structuring fish assemblages and that it was correlated with variables such as lake size, depth, distance from the river, and age, which exhibit a continuum of predictable features as the river migrates away from abandoned channels. Annual floods homogenize the floodplain and promote connectivity to various degrees, allowing for fish exchanges between river and floodplain that directly affect fish assemblages. The major physical changes linked to reduced connectivity are loss of depth and area, which in turn affect a multiplicity of abiotic and biotic features that indirectly affect community structure. In advanced stages of disconnection, fish assemblages in oxbow lakes are expected to include largely species that thrive in turbid, shallow systems with few predators and low oxygen content. When the river flowed without artificial restraint, oxbow lakes were created at the rate of 13-15 per century. At present, no or few oxbow lakes are being formed, and as existing lakes age, they are becoming shallower, smaller, and progressively more disconnected from the river. Given that modifications to the Mississippi River appear to be irreversible, conservation of this resource requires maintenance of existing lakes at a wide range of aging phases that provide diverse habitats and harbor distinct species assemblages.

Molecular identification of Giardia and Cryptosporidium from dogs and cats

PubMed Central

Sotiriadou, Isaia; Pantchev, Nikola; Gassmann, Doreen; Karanis, Panagiotis

2013-01-01

The aim of the present study was to diagnose the presence of Giardia cysts and Cryptosporidium oocysts in household animals using nested polymerase chain reaction (PCR) and sequence analysis. One hundred faecal samples obtained from 81 dogs and 19 cats were investigated. The Cryptosporidium genotypes were determined by sequencing a fragment of the small subunit (SSU) rRNA gene, while the Giardia Assemblages were determined through analysis of the glutamate dehydrogenase (GDH) locus. Isolates from five dogs and two cats were positive by PCR for the presence of Giardia, and their sequences matched the zoonotic Assemblage A of Giardia. Cryptosporidium spp. isolated from one dog and one cat were both found to be C. parvum. One dog isolate harboured a mixed infection of C. parvum and Giardia Assemblage A. These findings support the growing evidence that household animals are potential reservoirs of the zoonotic pathogens Giardia spp. and Cryptosporidium spp. for infections in humans. PMID:23477297

Terrestrial mollusk records from Chinese loess sequences and changes in the East Asian monsoonal environment

NASA Astrophysics Data System (ADS)

Wu, Naiqin; Li, Fengjiang; Rousseau, Denis-Didier

2018-04-01

The terrestrial mollusk fossils found in Chinese loess strata have been studied for over one hundred years. However, the greatest progress in these studies has been made only in the last two decades. In this paper, we review the advancements, advantages and limitations of terrestrial mollusk studies in Chinese loess deposits. Improvements in research methods and approaches have allowed the extraction of more detailed paleoenvironmental and paleoclimatic information from mollusk assemblages. The broadened research scope and content have yielded many new findings and results. The mollusk record has thus become one of the most important proxies in the paleoenvironmental and paleoclimatic reconstruction of loess-paleosol sequences in China. The greatest progress in the studies of terrestrial mollusks in Chinese loess sequences can be summarized as follows: (1) modern mollusk assemblages can be classified into four ecotypes, based on their temperature and humidity requirements, including eurytopic, semi-aridiphilous and sub-humidiphilous, cold-aridiphilous, and thermo-humidiphilous types; (2) Quaternary mollusk assemblages can be modified into the following three ecological types: glacial loess, interglacial paleosol, and interstadial weakly-developed paleosol assemblages; (3) mollusk records successfully reveal long-term climatic and environmental changes reflective of the history of East Asian monsoonal variations since the Late Cenozoic, and the succession of mollusk species also indicate short-term environmental changes such as millennial climate variability during Last Glacial Maximum and unstable climatic fluctuations during glacial and interglacial periods; and (4) more recently, new analytical approaches have offered increased research potential in areas such as paleotemperature reconstruction using the isotopic compositions of modern and fossil mollusk shells, combined with higher accuracy 14C dating of Quaternary loess deposits, which will greatly improve future loess paleoenvironmental research.

Mineralogy, composition and PGM of chromitites from Pefki, Pindos ophiolite complex (NW Greece): evidence for progressively elevated fAs conditions in the upper mantle sequence

NASA Astrophysics Data System (ADS)

Kapsiotis, Argirios; Grammatikopoulos, Tassos A.; Tsikouras, Basilios; Hatzipanagiotou, Konstantin; Zaccarini, Federica; Garuti, Giorgio

2011-01-01

The Pindos ophiolite complex, located in the northwestern part of continental Greece, hosts various chromite deposits of both metallurgical (high-Cr) and refractory (high-Al) type. The Pefki chromitites are banded and sub-concordant to the surrounding serpentinized dunites. The Cr# [Cr/(Cr + Al)] of magnesiochromite varies between 0.75 and 0.79. The total PGE grade ranges from 105.9 up to 300.0 ppb. IPGE are higher than PPGE, typical of mantle hosted ophiolitic chromitites. The PGM assemblage in chromitites comprises anduoite, ruarsite, laurite, irarsite, sperrylite, hollingworthite, Os-Ru-Ir alloys including osmium and rutheniridosmine, Ru-bearing oxides, braggite, paolovite, platarsite, cooperite, vysotskite, and palladodymite. Iridarsenite and omeiite were also observed as exsolutions in other PGM. Rare electrum and native Ag are recovered in concentrates. This PGM assemblage is of great petrogenetic importance because it is significantly different from that commonly observed in podiform mantle-hosted and banded crustal-hosted ophiolitic chromitites. PGE chalcogenides of As and S are primary, and possibly crystallized directly from a progressively enriched in As boninitic melt before or during magnesiochromite precipitation. The presence of Ru-bearing oxides implies simultaneous desulfurization and dearsenication processes. Chemically zoned laurite and composite paolovite-electrum intergrowths are indicative of the relatively high mobility of certain PGE at low temperatures under locally oxidizing conditions. The PGM assemblage and chemistry, in conjunction with geological and petrologic data of the studied chromitites, indicate that it is characteristic of chromitites found within or close to the petrologic Moho. Furthermore, the strikingly different PGM assemblages between the high-Cr chromitites within the Pindos massif is suggestive of non-homogeneous group of ores.

A chemical and thermodynamic model of oil generation in hydrocarbon source rocks

NASA Astrophysics Data System (ADS)

Helgeson, Harold C.; Richard, Laurent; McKenzie, William F.; Norton, Denis L.; Schmitt, Alexandra

2009-02-01

Thermodynamic calculations and Gibbs free energy minimization computer experiments strongly support the hypothesis that kerogen maturation and oil generation are inevitable consequences of oxidation/reduction disproportionation reactions caused by prograde metamorphism of hydrocarbon source rocks with increasing depth of burial.These experiments indicate that oxygen and hydrogen are conserved in the process.Accordingly, if water is stable and present in the source rock at temperatures ≳25 but ≲100 °C along a typical US Gulf Coast geotherm, immature (reduced) kerogen with a given atomic hydrogen to carbon ratio (H/C) melts incongruently with increasing temperature and depth of burial to produce a metastable equilibrium phase assemblage consisting of naphthenic/biomarker-rich crude oil, a type-II/III kerogen with an atomic hydrogen/carbon ratio (H/C) of ˜1, and water. Hence, this incongruent melting process promotes diagenetic reaction of detritus in the source rock to form authigenic mineral assemblages.However, in the water-absent region of the system CHO (which is extensive), any water initially present or subsequently entering the source rock is consumed by reaction with the most mature kerogen with the lowest H/C it encounters to form CO 2 gas and a new kerogen with higher H/C and O/C, both of which are in metastable equilibrium with one another.This hydrolytic disproportionation process progressively increases both the concentration of the solute in the aqueous phase, and the oil generation potential of the source rock; i.e., the new kerogen can then produce more crude oil.Petroleum is generated with increasing temperature and depth of burial of hydrocarbon source rocks in which water is not stable in the system CHO by a series of irreversible disproportionation reactions in which kerogens with higher (H/C)s melt incongruently to produce metastable equilibrium assemblages consisting of crude oil, CO 2 gas, and a more mature (oxidized) kerogen with a lower H/C which in turn melts incongruently with further burial to produce more crude oil, CO 2 gas, and a kerogen with a lower H/C and so forth.The petroleum generated in the process progresses from heavy naphthenic crude oils at low temperatures to mature petroleum at ˜150 °C. For example, the results of Computer Experiment 27 (see below) indicate that the overall incongruent melting reaction in the water-absent region of the system C-H-O at 150 °C and a depth of ˜4.3 km of an immature type-II/III kerogen with a bulk composition represented by C 292H 288O 12(c) to produce a mature (oxidized) kerogen represented by C 128H 68O 7(c), together with a typical crude oil with an average metastable equilibrium composition corresponding to C 8.8H 16.9 (C 8.8H 16.9(l)) and CO 2 gas (CO 2(g)) can be described by writing CHO (kerogen,H/C=0.99O/C=0.041) →1.527CHO(kerogen,H/C=0.53O/C=0.055) +10.896CH(crude oil,H/C=1.92)+0.656CO which corresponds to a disproportionation reaction in the source rock representing the sum of a series of oxidation/reduction conservation reactions. Consideration of the stoichiometries of incongruent melting reactions analogous to Reaction (A) for reactant kerogens with different (H/C)s and/or atomic oxygen to carbon ratios (O/C)s, together with crude oil compositions corresponding to Gibbs free energy minima at specified temperatures and pressures permits calculation of the volume of oil (mole of reactant organic carbon (ROC)) -1 that can be generated in, as well as the volume of oil (mol ROC) -1 which exceeds the volume of kerogen pore space produced that must be expelled from hydrocarbon source rocks as a function of temperature, pressure, and the H/C and O/C of the reactant kerogen. These volumes and the reaction coefficients (mol ROC) -1 of the product kerogen, crude oil, and CO 2 gas in the incongruent melting reaction are linear functions of the H/C and O/C of the reactant kerogen at a given temperature and pressure. The slopes of the isopleths can be computed from power functions of temperature along a typical US Gulf Coast geotherm. All of these reactions and relations are consistent with the well-known observations that (1) the relative abundance of mature kerogen increases, and that of immature kerogen decreases with increasing burial of hydrocarbon source rocks and (2) that the volume of oil generated in a given source rock increases with increasing weight percent total organic carbon (TOC) and the H/C and (to a lesser extent) the O/C of the immature kerogen. They are also compatible with preservation of biomarkers and other polymerized hydrocarbons during the incongruent melting process. It can be deduced from Reaction (A) that nearly 11 mol of crude oil are produced from one mole of the reactant kerogen (rk), which increases to ˜39.5 mol (mol rk) -1 as the carbon content and H/C of the reactant kerogen increase to that in the hydrogen-rich type-I kerogen represented by C 415H 698O 22(c). The secondary porosities created in source rocks by Reaction (A) and others like it are of the order of 75-80 vol % of the oil generated, which requires expulsion of the remainder, together with the CO 2 gas produced by the reaction. The expulsion of the CO 2 gas and excess crude oil from the hydrocarbon source rock is facilitated by their buoyancy and the fact that the pressure in the source rocks is ⩾ the fluid pressure in the adjoining formations during progressive generation of the volume of crude oil that exceeds the kerogen pore volume produced by the incongruent melting process. The expelled CO 2 gas lowers the pH of the surrounding formation waters, which promotes the development of secondary porosity and diagenetic reaction of detrital silicates to form authigenic mineral assemblages. Hence, the expulsion process facilitates initial upward migration of the oil, which is further enhanced by expansion of the oil and its reaction with H 2O at the oil-water interface to generate methane gas. Mass transfer calculations indicate that the minimal volume of crude oil expelled into these formations is comparable to, or exceeds the volume of oil produced and in proven reserves in major oil fields such as the North Sea, the Paris and Los Angeles Basins, and those in Kuwait, Saudi Arabia, and elsewhere in the Middle East. For example, taking account of the average weight percent ( W%) organic carbon in the immature kerogen (3.4 wt%) with an average H/C of ˜1.04 in the hydrocarbon source rocks in Saudi Arabia, which have an average thickness of ˜43 m, it can be shown (see below) that all of the oil (and oil equivalent of natural gas) produced and in proven reserves in Saudi Arabia (374 billion barrels of oil or ˜1.9 million barrels of oil km -2) can be accounted for by minimal expulsion from the source rocks of oil generated at ˜125 °C solely by the incongruent melting process. Computer experiments indicate that this process can also account for all the petroleum that can be, and has been generated in the world's hydrocarbon source rocks. Of the latter, as much as 75-80% may still remain in these rocks.

Abiotic CO2 reduction during geologic carbon sequestration facilitated by Fe(II)-bearing minerals

NASA Astrophysics Data System (ADS)

Nielsen, L. C.; Maher, K.; Bird, D. K.; Brown, G. E.; Thomas, B.; Johnson, N. C.; Rosenbauer, R. J.

2012-12-01

Redox reactions involving subsurface minerals and fluids and can lead to the abiotic generation of hydrocarbons from CO2 under certain conditions. Depleted oil reservoirs and saline aquifers targeted for geologic carbon sequestration (GCS) can contain significant quantities of minerals such as ferrous chlorite, which could facilitate the abiotic reduction of carbon dioxide to n-carboxylic acids, hydrocarbons, and amorphous carbon (C0). If such reactions occur, the injection of supercritical CO2 (scCO2) could significantly alter the oxidation state of the reservoir and cause extensive reorganization of the stable mineral assemblage via dissolution and reprecipitation reactions. Naturally occurring iron oxide minerals such as magnetite are known to catalyze CO2 reduction, resulting in the synthesis of organic compounds. Magnetite is thermodynamically stable in Fe(II) chlorite-bearing mineral assemblages typical of some reservoir formations. Thermodynamic calculations demonstrate that GCS reservoirs buffered by the chlorite-kaolinite-carbonate(siderite/magnesite)-quartz assemblage favor the reduction of CO2 to n-carboxylic acids, hydrocarbons, and C0, although the extent of abiotic CO2 reduction may be kinetically limited. To investigate the rates of abiotic CO2 reduction in the presence of magnetite, we performed batch abiotic CO2 reduction experiments using a Dickson-type rocking hydrothermal apparatus at temperatures (373 K) and pressures (100 bar) within the range of conditions relevant to GCS. Blank experiments containing CO2 and H2 were used to rule out the possibility of catalytic activity of the experimental apparatus. Reaction of brine-suspended magnetite nanoparticles with scCO2 at H2 partial pressures typical of reservoir rocks - up to 100 and 0.1 bars respectively - was used to investigate the kinetics of magnetite-catalyzed abiotic CO2 reduction. Later experiments introducing ferrous chlorite (ripidolite) were carried out to determine the potential for heterogeneous catalysis in GCS systems.

Metabasalts from the Mid-Atlantic Ridge: new insights into hydrothermal systems in slow-spreading crust

NASA Astrophysics Data System (ADS)

Gillis, Kathryn M.; Thompson, Geoffrey

1993-12-01

An extensive suite of hydrothermally altered rocks were recovered by Alvin and dredging along the MARK [Mid-Atlantic Ridge, south of the Kane Fracture Zone (23 24°N)] where detachment faulting has provided a window into the crustal component of hydrothermal systems. Rocks of basaltic composition are altered to two assemblages with these characteristics: (i) type I: albitic plagioclase (An02 10)+mixed-layer smectite/chlorite or chlorite±actinolite±quartz±sphene, <10% of the clinopyroxene is altered, and there is no trace metal mobility; (ii) type II: plagioclase (An10 30)+amphibole (actinolite-magnesio-hornblende) +chlorite+sphene, >20% of the clinopyroxene is altered, and Cu and Zn are leached. The geochemical signature of these alteration types reflects the relative proportion and composition of secondary minerals, and the degree of alteration of primary phases, and does not show simple predictive relationships. Element mobilities indicate that both alteration types formed at low water/rock ratios. The MARK assemblages are typical of the greenschist and transition to the amphibolite facies, and represent two distinct, albeit overlapping, temperature regimes: type I-180 to 300°C and type II-250 to 450°C. By analogy with DSDP/ODP Hole 504B and many ophiolites, the MARK metabasalts were altered within the downwelling limb of a hydrothermal cell and type I and II samples formed in the upper and lower portions of the sheeted like complex, respectively. Episodic magmatic and hydrothermal events at slow-spreading ridges suggest that these observed mineral assemblages represent the cumulative effects of more than one hydrothermal event. Groundmass and vein assemblages in the MARK metabasalts indicate either that alteration conditions did not change during successive hydrothermal events or that these assemblages record only the highest temperature event. Lack of retrograde reactions or overprinting of lower temperature assemblages (e.g., zeolites) suggests that there is a continuum in alteration conditions while crustal segments remain in the ridge axis environment. The type II samples may be representative of the reaction zone where compositions of hydrothermal fluids actively venting at the seafloor today become fixed. This prediction necessitates interaction between hydrothermal fluids and intersertal glass and/or mafic phases, in addition to plagioclase, in order to produce the observed range in vented fluid pH.

Seasonal flux and assemblage composition of planktic foraminifera from the northern Gulf of Mexico, 2008-2010

USGS Publications Warehouse

Spear, Jessica W.; Reynolds, Caitlin E.; Poore, Richard Z.

2011-01-01

The U.S. Geological Survey anchored a sediment trap in the northern Gulf of Mexico to collect seasonal time-series data on the flux and assemblage composition of live planktic foraminifers. This report provides an update of the previous time-series data to include results from 2010. Ten species, or varieties, of planktic foraminifers constituted ~90 percent of the assemblage: Globigerinoides ruber (pink and white varieties), Gs. sacculifer, Globigerina calida, Globigerinella aequilateralis, Globorotalia menardii group, Gt. truncatulinoides, Pulleniatina spp., Orbulina universa, and Neogloboquadrina dutertrei. The mean daily flux was 219 tests per square meter per day (m-2 day-1), with maximum fluxes of >600 tests m-2 day-1 during late December and minimum fluxes of -2 day-1) showed a steady increase of about a factor of 3 since 2009 (average 11 tests m-2 day-1), and an almost 10-fold increase from the 2008 flux (average 3 tests m-2 day-1). The progressive increase in flux resulted in a relatively large increase in percent abundance of total assemblage from 2008 (1.5 percent) to 2010 (12.4 percent). In addition, though Gs. ruber (white) percent abundance increased from 4.9 percent in 2009 to over 12 percent in 2010, it continued to occur in lower abundance than the 20-30 percent indicated by dead-assemblage records from nearby sediments.

The Reaction Titanite+Kyanite=Anorthite+Rutile and Titanite-Rutile Barometry in Eclogites

USGS Publications Warehouse

Manning, C.F.; Bohlen, S.R.

1991-01-01

Titanite and rutile are a common mineral pair in eclogites, and many equilibria involving these phases are potentially useful in estimating pressures of metamorphism. We have reversed one such reaction, {Mathematical expression} using a piston-cylinder apparatus. Titanite+kyanite is the high-pressure assemblage and our results locate the equilibrium between 15.5 15.9, 17.7-17.9, 18.8-19.0, and 20.0-20.2 kb at 900, 1000, 1050, and 1100??C, respectively. The experiments require a positive dP/dT of between 20.5 and 23.5 bars/??C for the reaction. We use the reversed equilibrium and two other reactions, {Mathematical expression} and {Mathematical expression} to calculate metamorphic conditions for three eclogite localities. Using these reactions in conjunction with garnet-clinopyroxene Fe2+-Mg exchange equilibria, conditions of metamorphism were 16 kb and 750??C for kyaniteeclogites from Glenelg, Scotland, 21 kb and 625??C for eclogite-facies mica schists from the Tauern Window, Austria, and 46 kb and 850??C for eclogite-facies biotite gneisses from the Kokchetav Massif, USSR. For the Scottish and Austrian eclogites, the pressures derived from the titanite-rutile reactions provide additional constraints on pressures for these localities, leading to precise estimates of metamorphic conditions. In the case of the Soviet Union eclogites, the results show that the silicate-oxide assemblage is consistent with the remarkable occurrence of diamond inclusions in the garnets. The results of this study suggest that titanite and rutile stably coexist in many eclogites and that titanite solid solutions are ideal or nearly so. ?? 1991 Springer-Verlag.

THE USE OF PERIPHYTON ASSEMBLAGE DATA AS AN INDEX OF BIOTIC INTEGRITY. (R824783)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

Live/Dead Comparisons of Ostracodes in Temperate Lakes Reveal Evidence of Human Impact and Provides a Tool to Measure the Progress of Remediation Efforts

NASA Astrophysics Data System (ADS)

Spergel, J.; Kimball, K. C.; Fitzpatrick, S. A.; Michelson, A. V.; Leonard-Pingel, J.

2015-12-01

Lake ecosystems face a multitude of environmental threats including: eutrophication, overfishing, and heavy metal pollution. Tools to identify lakes impacted by human activity and quantify that impact are needed to combat their environmental degradation. One such promising tool has been the comparison between living communities and associated time-averaged death assemblages of mollusks in marine environments. Here we extend the reach of such live/dead comparisons using ostracodes in temperate lakes. We sampled six lakes in Wisconsin for living communities and associated death assemblages of ostracodes: two lakes impacted by human activity, two relatively "pristine" lakes, and two remediated lakes. We took sixteen grab samples of the upper centimeter of sediment in each lake, capturing simultaneously living benthic ostracodes and discarded valves of dead ostracodes. We found that impacted lakes had lower live/dead fidelity in taxonomic composition and rank-order abundance distributions and greater within-lake variation in death assemblages than "pristine" lakes. Additionally, the living communities in the impacted lakes tended to be lower in species richness and have lower evenness than "pristine" lakes. Remediated lakes displayed similar live/dead fidelity in taxonomic composition and rank-abundance distributions to "pristine" lakes and had lower within-lake variation in death assemblages than impacted lakes. Remediated lakes also contained living communities that tended to be richer and more even than impacted lakes. The lower live/dead fidelity of ostracodes in impacted lakes indicate live/dead ostracode comparisons can provide a tool to identify lake ecosystems impacted by humans. The similar results of remediated and "pristine" lakes indicate remediation efforts in these lakes have been successful in alleviating environmental impact detrimental to ostracode communities. This result indicates live/dead comparisons of ostracodes can be a useful tool to monitor the progress of remediation efforts already underway. Further work will focus on dating the upper centimeter of sediment in these lakes to provide an estimate of how long it takes for death assemblages to accumulate and thus how long it will take to regain high live/dead fidelity in impacted lakes undergoing remediation.

Iron Oxidation Processes During Asteroidal Fluid-Rock Interactions: a Nanoscale Study of Serpentine-bearing Alteration Assemblages in the Murray Meteorite

NASA Astrophysics Data System (ADS)

Elmaleh, A.; Bourdelle, F.; Benzerara, K.; Caste, F.; Leroux, H.; Devouard, B.

2014-12-01

Carbonaceous chondrites of the CM and CI groups contain large amounts of water bound in minerals, attesting to early water-rock interactions on their parent bodies. In CM2 chondrites such as the Murray meteorite the alteration assemblages mostly consist of serpentines with variable chemical compositions. Even though chondritic serpentines formed from anoxic fluids, they contain significant amounts of ferric iron. In order to evaluate mass transfers and redox processes during alteration, we performed a study of a heavily altered calcium-aluminium-rich inclusion (CAI), at the nanometer scale (Transmission Electron Microscopy and Soft x-Ray Scanning Transmission Spectro-Microscopy, on ultra-thin sections prepared by Focused Ion Beam - FIB - milling). Using x-ray absorption spectroscopy at the Fe L2,3-edges, and based on literature references and on measurements of crystallographically oriented FIB foils of cronstedtite (the mixed-valence Fe endmember of serpentine) we estimated over 50% Fe3+ in alteration assemblages. We measured higher ferric iron proportions in mixed Fe,Mg,Al-serpentine/hydroxide disordered phases than in well-crystallized Al,Mg-bearing cronstedtite. We suggest that aqueous Fe2+ was transported to the initially Fe-depleted CAI. There, local changes in pH conditions and / or mineral catalysis would have promoted the partial oxidation of Fe. Later input of Al- and Mg-rich solutions might then have destabilized the initial serpentine, yielding assemblages un-equilibrated from the structural, chemical and redox point of views, similar to the polysomatic assemblages observed in terrestrial hydrothermal systems. Here, we illustrate the usefulness of such a combined study for better understanding the processes of hydration on the parent body of carbonaceous chondrites. Interestingly, as the reactions proposed for the oxidation of Fe generate hydrogen, reduction reactions - involving carbon species, for instance - are expected to follow the ones described here. Alternatively, given the high rate of diffusion of hydrogen some degree of H2 escape may be expected too, which would have induced increasingly oxidizing conditions during aqueous alteration.

SENSITIVITY OF INDICES OF BIOTIC INTEGRITY TO SIMULATED FISH ASSEMBLAGE CHANGES - 2

EPA Science Inventory

Multi-metric indices of biotic integrity (IBI) are commonly used to compare fish communities among streams, but their ability to monitor trends within streams is largely unknown. We assessed the IBI trend detection ability using simulations which progressively degraded the fish a...

SPATIAL PATTERNS AND ECOLOGICAL DETERMINANTS OF BENTHIC ALGAL ASSEMBLAGES IN MID-ATLANTIC HIGHLAND STREAMS. (R824783)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

CONCORDANCE OF TAXONOMIC RICHNESS PATTERNS ACROSS MULTIPLE ASSEMBLAGES IN LAKES OF THE NORTHEASTERN USA. (R826591)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

Long-term trends in the structure of eastern Adriatic littoral fish assemblages: Consequences for fisheries management

NASA Astrophysics Data System (ADS)

Stagličić, N.; Matić-Skoko, S.; Pallaoro, A.; Grgičević, R.; Kraljević, M.; Tutman, P.; Dragičević, B.; Dulčić, J.

2011-09-01

Long-term interannual changes in abundance, biomass, diversity and structure of littoral fish assemblages were examined between 1993 and 2009 by experimental trammel net fishing up to six times per year, within the warm period - May to September, at multiple areas along the eastern Adriatic coast with the aim of testing for the consistency of patterns of change across a large spatial scale (˜600 km). The results revealed spatially consistent increasing trends of total fish abundance and biomass growing at an average rate of 15 and 14% per year, respectively. Of the diversity indices analysed, the same pattern of variability was observed for Shannon diversity, while Pielou evenness and average taxonomic distinctness measures Δ ∗ and Δ + showed spatial variability with no obvious temporal trends. Multivariate fish assemblage structure underwent a directional change displaying a similar pattern through time for all the areas. The structural change in fish assemblages generally involved most of the species present in trammel net catches. A large pool of fish species responsible for producing the temporal pattern of assemblage change was relatively different in each of the areas reflecting a large geographic range covered by the study. An analysis of 4 fish species ( Symphodus tinca, Pagellus erythrinus, Mullus surmuletus, Scorpaena porcus) common to each of the study areas as the ones driving the temporal change indicated that there were clear increasing trends of their mean catches across the years at all the study areas. A common pattern among time trajectories across the spatial scale studied implies that the factor affecting the littoral fish assemblages is not localised but regional in nature. As an underlying factor having the potential to induce such widespread and consistent improvements in littoral fish assemblages, a more restrictive artisanal fishery management that has progressively been put in place during the study period, is suggested and discussed.

CONCORDANCE OF TAXONOMIC COMPOSITION PATTERNS ACROSS MULTIPLE LAKE ASSEMBLAGES: EFFECTS OF SCALE, BODY SIZE, AND LAND USE. (R826591)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

Hydrous melt-rock reaction in the shallow mantle wedge

NASA Astrophysics Data System (ADS)

Mitchell, A.; Grove, T. L.

2017-12-01

In subduction zone magmatism, hotter, deeper hydrous mantle melts rise and interact with the shallower, cooler depleted mantle in the uppermost part of the mantle wedge. Here, we experimentally investigate these hydrous reactions using three different ratios of a 1.6 GPa mantle melt and an overlying 1.2 GPa harzburgite from 1060 to 1260 °C. At low ratios of melt/mantle (20:80 and 5:95), the crystallizing assemblages are dunites, harzburgites, and lherzolites (as a function of temperature). When the ratio of deeper melt to overlying mantle is 70:30, the crystallizing assemblage is a wehrlite. This shows that wehrlites, which are observed in ophiolites and mantle xenoliths, can be formed by large amounts of deeper melt fluxing though the mantle wedge during ascent. In all cases, orthopyroxene dissolves in the melt, and olivine crystallizes along with pyroxenes and spinel. The amount of reaction between deeper melts and overlying mantle, simulated here by the three starting compositions, imposes a strong influence on final melt compositions, particularly in terms of depletion. At the lowest melt/mantle ratios, the resulting melt is an extremely depleted Al-poor, high-Si andesite. As the fraction of melt to mantle increases, final melts resemble primitive basaltic andesites found in arcs globally. Wall rock temperature is a key variable; over a span of <80 °C, reaction with deeper melt creates the entire range of mantle lithologies from a depleted dunite to a harzburgite to a refertilized lherzolite. Together, the experimental phase equilibria, melt compositions, and calculated reaction coefficients provide a framework for understanding how melt-wall rock reaction occurs in the natural system during melt ascent in the mantle wedge.

Geobiochemistry: Placing Biochemistry in Its Geochemical Context

NASA Astrophysics Data System (ADS)

Shock, E.; Boyer, G. M.; Canovas, P. A., III; Prasad, A.; Dick, J. M.

2014-12-01

Goals of geobiochemistry include simultaneously evaluating the relative stabilities of microbial cells and minerals, and predicting how the composition of biomolecules can change in response to the progress of geochemical reactions. Recent developments in theoretical geochemistry make it possible to predict standard thermodynamic properties of proteins, nucleotides, lipids, and many metabolites including the constituents of the citric acid cycle, at all temperatures and pressures where life is known to occur, and beyond. Combining these predictions with constraints from geochemical data makes it possible to assess the relative stabilities of biomolecules. Resulting independent predictions of the environmental occurrence of homologous proteins and lipid side-chains can be compared with observations from metagenomic and metalipidomic data to quantify geochemical driving forces that shape the composition of biomolecules. In addition, the energetic costs of generating biomolecules from within a diverse range of habitable environments can be evaluated in terms of prevailing geochemical variables. Comparisons of geochemical bioenergetic calculations across habitats leads to the generalization that the availability of H2 determines the cost of autotrophic biosynthesis relative to the aquatic environment external to microbial cells, and that pH, temperature, pressure, and availability of C, N, P, and S are typically secondary. Increasingly reduced conditions, which are determined by reactions of water with mineral surfaces and mineral assemblages, allow many biosynthetic reactions to shift from costing energy to releasing energy. Protein and lipid synthesis, as well as the reverse citric acid cycle, become energy-releasing processes under these conditions. The resulting energy balances that determine habitability contrast dramatically with assumptions derived from oxic surface conditions, such as those where human biochemistry operates.

Present day serpentinization in New Caledonia, Oman and Yugoslavia

USGS Publications Warehouse

Barnes, I.; O'Neil, J.R.; Trescases, J.J.

1978-01-01

Geochemical evidence for modern low-temperature serpentinization has been found in three new localities. Apparently the low-temperature reactions are a common mode of formation of the lizardite-chrysotile and brucite assemblage. Possibly the 18O content of serpentine formed at low temperatures is in part inherited from the pyroxene and olivine. ?? 1978.

Oxidation of dissolved iron under warmer, wetter conditions on Mars: Transitions to present-day arid environments

NASA Technical Reports Server (NTRS)

Burns, R. G.

1993-01-01

The copious deposits of ferric-iron assemblages littering the surface of bright regions of Mars indicate that efficient oxidative weathering reactions have taken place during the evolution of the planet. Because the kinetics of atmosphere-surface (gas-solid) reactions are considerably slower than chemical weathering reactions involving an aqueous medium, most of the oxidation products now present in the martian regolith probably formed when groundwater flowed near the surface. This paper examines how chemical weathering reactions were effected by climatic variations when warm, wet environments became arid on Mars. Analogies are drawn with hydrogeochemical and weathering environments on the Australian continent where present-day oxidation of iron is occurring in acidic ground water under arid conditions.

Neoarchean high-pressure metamorphism from the northern margin of the Palghat-Cauvery Suture Zone, southern India: Petrology and zircon SHRIMP geochronology

NASA Astrophysics Data System (ADS)

Saitoh, Yohsuke; Tsunogae, Toshiaki; Santosh, M.; Chetty, T. R. K.; Horie, Kenji

2011-08-01

We report the metamorphic pressure-temperature ( P- T) history of mafic granulites from two localities in southern India, one from Kanja Malai in the northern margin and the other from Perundurai in the central domain of the Palghat-Cauvery Suture Zone (PCSZ). The PCSZ is described in recent models as the trace of the suture along which crustal blocks were amalgamated within the Gondwana supercontinent during Late Neoproterozoic-Cambrian. The mafic granulite from Kanja Malai yields P- T conditions of 750-800 °C and 8-12 kbar reflecting the partially retrograded conditions following a peak high-pressure (HP) metamorphic event. The common Grt + Cpx + Qtz assemblage in these rocks and lack of decompression texture suggest that peak metamorphism was probably buffered by Grt + Cpx + Opx + Pl + Qtz assemblage, following which the rocks were exhumed through a gradual P- T decrease. The mafic granulite from Perundurai (Grt + Cpx + Pl) contains Opx + Pl symplectite commonly occurring between garnet and clinopyroxene, suggesting the progress of reaction: Grt + Cpx + Qtz → Opx + Pl, with the Grt + Cpx + Qtz representing the peak metamorphic assemblage. The reaction microstructures and calculated P- T conditions suggest that the mafic granulites from Perundurai underwent peak HP metamorphism at P > 12 kbar and T = 800-900 °C and subsequent isothermal decompression along a clockwise P- T path, in contrast to the P- T path inferred for Kanja Malai. The contrasting P- T paths obtained from the two localities suggest that whereas Perundurai is a part of the metamorphic orogen developed within the PCSZ during Gondwana assembly, the high-pressure granulites of Kanja Malai belong to a different orogenic regime. In order to evaluate this aspect further, we analyzed zircons in a charnockite and garnet-bearing quartzo-feldspathic gneiss associated with the HP granulites from Kanja Malai which yielded mean 207Pb/ 206Pb magmatic protolith emplacement ages of 2536.1 ± 1.4 Ma and 2532.4 ± 3.7 Ma, and peak metamorphic ages of 2477.6 ± 1.8 Ma and 2483.9 ± 2.5 Ma, respectively. These results closely compare with the available magmatic (2530-2540 Ma) and metamorphic (2470-2480 Ma) ages reported from charnockites in the Salem Block at the southern fringe of the Archean Dharwar craton, immediately north of the PCSZ. The Neoarchean/Paleoproterozoic ages obtained from Kanja Malai correlate with the tectonic history at the margin of the Archean craton. Although no age data are available for the Perundurai mafic granulite, the close correspondence of their P- T data and exhumation path with those reported for Late Neoproterozoic-Cambrian HP-UHT metamorphism within the PCSZ suggest that these rocks form part of the Gondwana-forming orogen.

Depth-related trends in morphological and functional diversity of demersal fish assemblages in the western Mediterranean Sea

NASA Astrophysics Data System (ADS)

Farré, Marc; Tuset, Víctor M.; Cartes, Joan E.; Massutí, Enric; Lombarte, Antoni

2016-09-01

The morphological and functional traits of fishes are key factors defining the ecological and biological habits of species within ecosystems. However, little is known about how the depth gradient affects these factors. In the present study, several demersal fish assemblages from the Balearic Islands (western Mediterranean Sea) along a wide depth range (40-2200 m) were morphologically, functionally and ecologically described. The morphological characterization of communities was performed using geometric morphometric methods, while the functional structures were obtained by the functional categorization of species and the application of principal coordinates analysis (PCoA). The results revealed that morphospaces presented less richness of body forms as depth increases, although they showed a progressive spreading of species toward the periphery, with a proliferation of more extreme body traits, demonstrating lower morphological redundancy. In addition, a trend toward the elongation of body shape was also observed with depth. Moreover, functional diversity increased with bathymetry up to 1400 m, where it sharply decreased downwards. This decrease was parallel to a progressive fall of H‧ (ecological diversity) up to 2200 m. Functional redundancy progressively decreased until the deepest assemblage (more constantly in the deeper levels), which was almost exclusively dominated by benthopelagic wandering species feeding on suprabenthos. Redundancy analysis (RDA) demonstrated that both morphological and functional spaces showed high variation along the bathymetric range. Mantel test indicated that the majority of species presented similar spatial distribution within the morphospace and functional space, although in the functional space the more abundant species were always located at the periphery. These results demonstrate that the assessment of the morpho-functional variation between marine communities helps to understand the processes that affect the structure and functioning of communities, such as resource partitioning, trophic interactions, or interspecific relationships within ecosystem such as coexistence and dominance.

Experimental constraints on mantle metasomatism caused by silicate and carbonate melts

NASA Astrophysics Data System (ADS)

Gervasoni, Fernanda; Klemme, Stephan; Rohrbach, Arno; Grützner, Tobias; Berndt, Jasper

2017-06-01

Metasomatic processes are responsible for many of the heterogeneities found in the upper mantle. To better understand the metasomatism in the lithospheric mantle and to illustrate the differences between metasomatism caused by hydrous silicate and carbonate-rich melts, we performed various interaction experiments: (1) Reactions between hydrous eclogite-derived melts and peridotite at 2.2-2.5 GPa and 900-1000 °C reproduce the metasomatism in the mantle wedge above subduction zones. (2) Reactions between carbonate-rich melts and peridotite at 2.5 GPa and 1050-1000 °C, and at 6 GPa and 1200-1250 °C simulate metasomatism of carbonatite and ultramafic silicate-carbonate melts in different regions of cratonic lithosphere. Our experimental results show that partial melting of hydrous eclogite produces hydrous Si- and Al-rich melts that react with peridotite and form bi-mineralic assemblages of Al-rich orthopyroxene and Mg-rich amphibole. We also found that carbonate-rich melts with different compositions react with peridotite and form new metasomatic wehrlitic mineral assemblages. Metasomatic reactions caused by Ca-rich carbonatite melt consume the primary peridotite and produce large amounts of metasomatic clinopyroxene; on the other hand, metasomatism caused by ultramafic silicate-carbonate melts produces less clinopyroxene. Furthermore, our experiments show that ultramafic silicate-carbonate melts react strongly with peridotite and cause crystallization of large amounts of metasomatic Fe-Ti oxides. The reactions of metasomatic melts with peridotite also change the melt composition. For instance, if the carbonatite melt is not entirely consumed during the metasomatic reactions, its melt composition may change dramatically, generating an alkali-rich carbonated silicate melt that is similar in composition to type I kimberlites.

Silica-undersaturated reaction zones at a crust-mantle interface in the Highland Complex, Sri Lanka: Mass transfer and melt infiltration during high-temperature metasomatism

NASA Astrophysics Data System (ADS)

Fernando, G. W. A. R.; Dharmapriya, P. L.; Baumgartner, Lukas P.

2017-07-01

Sri Lanka is a crucial Gondwana fragment mostly composed of granulitic rocks in the Highland Complex surrounded by rocks with granulite to amphibolite grade in the Vijayan and Wanni Complex that were structurally juxtaposed during Pan-African orogeny. Fluids associated with granulite-facies metamorphism are thought to have controlled various lower crustal processes such as dehydration/hydration reactions, partial melting, and high-temperature metasomatism. Chemical disequilibrium in the hybrid contact zone between a near peak post-tectonic ultramafic enclave and siliceous granulitic gneiss at Rupaha within the Highland Complex produced metasomatic reaction zones under the presence of melt. Different reaction zones observed in the contact zone show the mineral assemblages phlogopite + spinel + sapphirine (zone A), spinel + sapphirine + corundum (zone B), corundum ( 30%) + biotite + plagioclase zone (zone C) and plagioclase + biotite + corundum ( 5%) zone (zone D). Chemical potential diagrams and mass balance reveal that the addition of Mg from ultramafic rocks and removal of Si from siliceous granulitic gneiss gave rise to residual enrichment of Al in the metasomatized mineral assemblages. We propose that contact metasomatism between the two units, promoted by melt influx, caused steady state diffusional transport across the profile. Corundum growth was promoted by the strong residual Al enrichment and Si depletion in reaction zone whereas sapphirine may have been formed under high Mg activity near the ultramafic rocks. Modelling also indicated that metasomatic alteration occurred at ca. 850 °C at 9 kbar, which is consistent with post-peak metamorphic conditions reached during the initial stage of exhumation in the lower crust and with temperature calculations based on conventional geothermometry.

Mineral Reactions Involving Sapphirine and Their Application for Characterization of Metamorphic Conditions

NASA Astrophysics Data System (ADS)

Podlesskii, K. K.

2008-05-01

Assemblages of sapphirine, once considered to be a rare mineral, have in recent years been recognized as important indicators of high-temperature metamorphism. They occur in rocks that have undergone different tectono-metamorphic histories, with the P-T range of formation being estimated from below 700°C and 0.5 GPa to above 1100°C and 1.5 GPa. Sapphirine associated with quartz is attributed exclusively to the highest temperature conditions of crustal metamorphism referred to as ultrahigh-temperatiure metamorphism. Although experimental data involving sapphirine extend over an even wider P-T range, the quantitative interpretation of sapphirine-bearing assemblages remains ambiguous. Thermodynamic properties of magnesian sapphirine end-members have been optimized on the basis of experimentally constrained phase relations with the equation of state developed by Gerya et al., 2004. They differ from the model used in THERMOCALC (Kelsey et al., 2004), and the differences in the estimated stability of assemblages of sapphirine with quartz, kyanite and forsterite, to which a special attention have been paid due to their petrologic importance, look dramatic and may change interpretations of petrogenetic processes.

Earth and ocean modeling

NASA Technical Reports Server (NTRS)

Knezovich, F. M.

1976-01-01

A modular structured system of computer programs is presented utilizing earth and ocean dynamical data keyed to finitely defined parameters. The model is an assemblage of mathematical algorithms with an inherent capability of maturation with progressive improvements in observational data frequencies, accuracies and scopes. The Eom in its present state is a first-order approach to a geophysical model of the earth's dynamics.

Comprehensive Model of Annual Plankton Succession Based on the Whole-Plankton Time Series Approach

PubMed Central

Romagnan, Jean-Baptiste; Legendre, Louis; Guidi, Lionel; Jamet, Jean-Louis; Jamet, Dominique; Mousseau, Laure; Pedrotti, Maria-Luiza; Picheral, Marc; Gorsky, Gabriel; Sardet, Christian; Stemmann, Lars

2015-01-01

Ecological succession provides a widely accepted description of seasonal changes in phytoplankton and mesozooplankton assemblages in the natural environment, but concurrent changes in smaller (i.e. microbes) and larger (i.e. macroplankton) organisms are not included in the model because plankton ranging from bacteria to jellies are seldom sampled and analyzed simultaneously. Here we studied, for the first time in the aquatic literature, the succession of marine plankton in the whole-plankton assemblage that spanned 5 orders of magnitude in size from microbes to macroplankton predators (not including fish or fish larvae, for which no consistent data were available). Samples were collected in the northwestern Mediterranean Sea (Bay of Villefranche) weekly during 10 months. Simultaneously collected samples were analyzed by flow cytometry, inverse microscopy, FlowCam, and ZooScan. The whole-plankton assemblage underwent sharp reorganizations that corresponded to bottom-up events of vertical mixing in the water-column, and its development was top-down controlled by large gelatinous filter feeders and predators. Based on the results provided by our novel whole-plankton assemblage approach, we propose a new comprehensive conceptual model of the annual plankton succession (i.e. whole plankton model) characterized by both stepwise stacking of four broad trophic communities from early spring through summer, which is a new concept, and progressive replacement of ecological plankton categories within the different trophic communities, as recognised traditionally. PMID:25780912

Shift in a Large River Fish Assemblage: Body-Size and Trophic Structure Dynamics

PubMed Central

Broadway, Kyle J.; Pyron, Mark; Gammon, James R.; Murry, Brent A.

2015-01-01

As the intensity and speed of environmental change increase at both local and global scales it is imperative that we gain a better understanding of the ecological implications of community shifts. While there has been substantial progress toward understanding the drivers and subsequent responses of community change (e.g. lake trophic state), the ecological impacts of food web changes are far less understood. We analyzed Wabash River fish assemblage data collected from 1974-2008, to evaluate temporal variation in body-size structure and functional group composition. Two parameters derived from annual community size-spectra were our major response variables: (1) the regression slope is an index of ecological efficiency and predator-prey biomass ratios, and (2) spectral elevation (regression midpoint height) is a proxy for food web capacity. We detected a large assemblage shift, over at least a seven year period, defined by dramatic changes in abundance (measured as catch-per-unit-effort) of the dominant functional feeding groups among two time periods; from an assemblage dominated by planktivore-omnivores to benthic invertivores. There was a concurrent increase in ecological efficiency (slopes increased over time) following the shift associated with an increase in large-bodied low trophic level fish. Food web capacity remained relatively stable with no clear temporal trends. Thus, increased ecological efficiency occurred simultaneous to a compensatory response that shifted biomass among functional feeding groups. PMID:25902144

Diagenesis and clay mineral formation at Gale Crater, Mars

PubMed Central

Bridges, J C; Schwenzer, S P; Leveille, R; Westall, F; Wiens, R C; Mangold, N; Bristow, T; Edwards, P; Berger, G

2015-01-01

The Mars Science Laboratory rover Curiosity found host rocks of basaltic composition and alteration assemblages containing clay minerals at Yellowknife Bay, Gale Crater. On the basis of the observed host rock and alteration minerals, we present results of equilibrium thermochemical modeling of the Sheepbed mudstones of Yellowknife Bay in order to constrain the formation conditions of its secondary mineral assemblage. Building on conclusions from sedimentary observations by the Mars Science Laboratory team, we assume diagenetic, in situ alteration. The modeling shows that the mineral assemblage formed by the reaction of a CO2-poor and oxidizing, dilute aqueous solution (Gale Portage Water) in an open system with the Fe-rich basaltic-composition sedimentary rocks at 10–50°C and water/rock ratio (mass of rock reacted with the starting fluid) of 100–1000, pH of ∽7.5–12. Model alteration assemblages predominantly contain phyllosilicates (Fe-smectite, chlorite), the bulk composition of a mixture of which is close to that of saponite inferred from Chemistry and Mineralogy data and to that of saponite observed in the nakhlite Martian meteorites and terrestrial analogues. To match the observed clay mineral chemistry, inhomogeneous dissolution dominated by the amorphous phase and olivine is required. We therefore deduce a dissolving composition of approximately 70% amorphous material, with 20% olivine, and 10% whole rock component. PMID:26213668

Diagenesis and clay mineral formation at Gale Crater, Mars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bridges, J. C.; Schwenzer, S. P.; Leveille, R.

The Mars Science Laboratory rover Curiosity found host rocks of basaltic composition and alteration assemblages containing clay minerals at Yellowknife Bay, Gale Crater. On the basis of the observed host rock and alteration minerals, we present results of equilibrium thermochemical modeling of the Sheepbed mudstones of Yellowknife Bay in order to constrain the formation conditions of its secondary mineral assemblage. Building on conclusions from sedimentary observations by the Mars Science Laboratory team, we assume diagenetic, in situ alteration. The modeling shows that the mineral assemblage formed by the reaction of a CO₂-poor and oxidizing, dilute aqueous solution (Gale Portage Water)more » in an open system with the Fe-rich basaltic-composition sedimentary rocks at 10–50°C and water/rock ratio (mass of rock reacted with the starting fluid) of 100–1000, pH of ~7.5–12. Model alteration assemblages predominantly contain phyllosilicates (Fe-smectite, chlorite), the bulk composition of a mixture of which is close to that of saponite inferred from Chemistry and Mineralogy data and to that of saponite observed in the nakhlite Martian meteorites and terrestrial analogues. To match the observed clay mineral chemistry, inhomogeneous dissolution dominated by the amorphous phase and olivine is required. We therefore deduce a dissolving composition of approximately 70% amorphous material, with 20% olivine, and 10% whole rock component.« less

Zeolites in Eocene basaltic pillow lavas of the Siletz River Volcanics, Central Coast Range, Oregon

USGS Publications Warehouse

Keith, Terry E.C.; Staplese, Lloyd W.

1985-01-01

Zeolites and associated minerals occur in a tholeiitic basaltic pillow lava sequence that makes up part of the Eocene Siletz River Volcanics in the central Coast Range, Oregon. Regional zoning of zeolite assemblages is not apparent; the zeolites formed in joints, fractures, and interstices, although most occur in central cavities of basalt pillows. The zeolites and associated minerals identified, in general order of paragenetic sequence, are smectite, pyrite, calcite (small spheres), thomsonite, natrolite, analcime, scolecite, mesolite, stilbite, heulandite, apophyllite, chahazite, mordenite, calcite (scalenohedra and twinned rhombohedra), laumontite, and amethystine quartz. Common three-mineral assemblages are: natrolite-analcime-sfilbite, stilbite-heulandite-chabazite, stilbite-apophyllie-chabazite, and natrolite-mesolite-laumontite.Alteration of basaltic glass, which was initially abundant, appears to have been an important factor in formation of the zeolites. Isotopic data suggest that zeolitization occurred during a low-temperature (60 ~ 70°C submarine hydrothermal event, or by reactions of cold (~ 10°C meteoric water with basalt over a long time. The occurrence of different mineral assemblages in cavities of adjacent basalt pillows indicates that these minerals crystallized in dosed systems that were isolated as fractures and joints were sealed by deposition of smectite and early zeolites. Although the total chemical composition of the mineral assemblages in cavities is similar, different mineral species formed because of the sensitivity of zeolite minerals to slight variations in physical and chemical conditions within individual cavities.

Diagenesis and clay mineral formation at Gale Crater, Mars

DOE PAGES

Bridges, J. C.; Schwenzer, S. P.; Leveille, R.; ...

2015-01-18

The Mars Science Laboratory rover Curiosity found host rocks of basaltic composition and alteration assemblages containing clay minerals at Yellowknife Bay, Gale Crater. On the basis of the observed host rock and alteration minerals, we present results of equilibrium thermochemical modeling of the Sheepbed mudstones of Yellowknife Bay in order to constrain the formation conditions of its secondary mineral assemblage. Building on conclusions from sedimentary observations by the Mars Science Laboratory team, we assume diagenetic, in situ alteration. The modeling shows that the mineral assemblage formed by the reaction of a CO₂-poor and oxidizing, dilute aqueous solution (Gale Portage Water)more » in an open system with the Fe-rich basaltic-composition sedimentary rocks at 10–50°C and water/rock ratio (mass of rock reacted with the starting fluid) of 100–1000, pH of ~7.5–12. Model alteration assemblages predominantly contain phyllosilicates (Fe-smectite, chlorite), the bulk composition of a mixture of which is close to that of saponite inferred from Chemistry and Mineralogy data and to that of saponite observed in the nakhlite Martian meteorites and terrestrial analogues. To match the observed clay mineral chemistry, inhomogeneous dissolution dominated by the amorphous phase and olivine is required. We therefore deduce a dissolving composition of approximately 70% amorphous material, with 20% olivine, and 10% whole rock component.« less

Occurency of Giardia duodenalis assemblages in river water sources of Black Sea, Turkey.

PubMed

Koloren, Zeynep; Seferoğlu, Onuralp; Karanis, Panagiotis

2016-12-01

A total of 420 environmental water samples and 120 drinking water samples from 45 different sampling sites of the Black Sea in Turkey were collected between 2012 and 2014. Genomic DNA was isolated from all the investigated water samples and comparativelly analyzed by Loop-mediated isothermal amplification (LAMP) of the elongation factor 1 Alfa (EF1α) gene, and by nested Polymerase Chain Reaction (nPCR) of the small subunit (SSU) rRNA and semi-nested PCR (snPCR) of the glutamate dehydrogenase gene (GDH). 141 (58.7%), 125 (52.1%) and 120 (50%) samples respectivelly were positive by each method. Out of 240 environmental samples collected from 25 sites of Samsun Province have been found positive for G. duodenalis by LAMP, nPCR and snPCR, respectively. 55 (30.5%), 50 (27.8%) and 47 (26.1%) of 180 environmental samples collected from 20 other sampling sites of Giresun Province were positive for Giardia by LAMP, nPCR and snPCR, respectively. Five PCR products from different samples of the Giresun Province and 10 other samples from the Samsun Province were found positive for G. duodenalis assemblage B. Five PCR products from Giresun Province and 5 samples from Samsun Province were found positive for G. duodenalis assemblage A. This is the first report about G. duodenalis assemblages A and B from water samples investigations in Black Sea of Turkey. Copyright © 2016 Elsevier B.V. All rights reserved.

Psychometrics in action, science as practice.

PubMed

Pearce, Jacob

2017-07-27

Practitioners in health sciences education and assessment regularly use a range of psychometric techniques to analyse data, evaluate models, and make crucial progression decisions regarding student learning. However, a recent editorial entitled "Is Psychometrics Science?" highlighted some core epistemological and practical problems in psychometrics, and brought its legitimacy into question. This paper attempts to address these issues by applying some key ideas from history and philosophy of science (HPS) discourse. I present some of the conceptual developments in HPS that have bearing on the psychometrics debate. Next, by shifting the focus onto what constitutes the practice of science, I discuss psychometrics in action. Some incorrectly conceptualize science as an assemblage of truths, rather than an assemblage of tools and goals. Psychometrics, however, seems to be an assemblage of methods and techniques. Psychometrics in action represents a range of practices using specific tools in specific contexts. This does not render the practice of psychometrics meaningless or futile. Engaging in debates about whether or not we should regard psychometrics as 'scientific' is, however, a fruitless enterprise. The key question and focus should be whether, on what grounds, and in what contexts, the existing methods and techniques used by psychometricians can be justified or criticized.

Early tetrapod evolution and the progressive integration of Permo-Carboniferous terrestrial ecosystems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beerbower, J.R.; Olson, E.C.; Hotton, N. III

1992-01-01

Variation among Permo-Carboniferous tetrapod assemblages demonstrates major transformations in pathways and rates of energy and nutrient transfer, in integration of terrestrial ecosystems and in predominant ecologic modes. Early Carboniferous pathways were through plant detritus to aquatic and terrestrial detritivores and thence to arthropod and vertebrate meso-and macro-predators. Transfer rates (and efficiency) were low as was ecosystem integration; the principal ecologic mode was conservation. Late Carboniferous and Early Permian assemblages demonstrate an expansion in herbivory, primarily in utilization of low-fiber plant tissue by insects. But transfer rates, efficiency and integration were still limited because the larger portion of plant biomass, high-fibermore » tissues, still went into detrital pathways; high-fiber'' herbivores, i.e., tetrapods, were neither abundant or diverse, reflecting limited resources, intense predation and limited capabilities for processing fiber-rich food. The abundance and diversity of tetrapod herbivores in upper Permian assemblages suggests a considerable transfer of energy from high-fiber tissues through these animals to tetrapod predators and thus higher transfer rates and efficiencies. It also brought a shift in ecological mode toward acquisition and regulation and tightened ecosystem integration.« less

First occurrence of very low pressure ultra-high temperatures metamorphism in the Khondalite Belt, North China Craton.

NASA Astrophysics Data System (ADS)

Lobjoie, Cyril; Lin, Wei; Trap, Pierre; Goncalves, Philippe; Marquer, Didier

2016-04-01

This study report the first occurrence of very low pressure (<0.4GPa) ultra-high temperatures metamorphism within the Paleoproterozoic Khondalite Belt of the North China Craton. This high grade orogenic domain is mostly composed of garnet +/- spinel +/- sapphirine-bearing migmatites, numerous Grt-bearing granites and marbles. These rocks are intruded by numerous metric to kilometric mafic intrusions. Petrological analyses and phase equilibria diagram modeling were performed on garnet and spinel-bearing and olivine-bearing migmatites. Garnet and spinel-bearing migmatites show a quartz, ternary feldspar, garnet, biotite sillimanite and spinel main assemblage. Pseudosection diagram calculations give suprasolidus P-T conditions around ca. 0.7GPa for ca. 900°C that correspond to the peak temperature conditions. Thermometry using ternary feldspar thermometry gives temperatures estimations at ca. 950-1015°C for a pressure of 0.7GPa. The Olivine-bearing migmatite, located at the contact with a mafic intrusion, shows two main assemblages. The first assemblage that makes the rock matrix consists of a micrographic quartz and feldspar domains associated with biotite, sillimanite and spinel. The second assemblage appears within mm-scale pockets with a complex symplectitic texture. Careful investigation revealed that theses pockets formed after garnet pseudomorphosis, with the development of an Opx-Sp-Crd association. Within this assemblage, an olivine-cordierite and Opx-Crd-Bi-Qtz assemblage occurred as smaller pockets. The petrogenetic grid and pseudosection calculations made for this olivine-bearing migmatite give P-T conditions around 0.35GPa for ca. 950°C that correspond to the peak temperature conditions recorded by the olivine-cordierite assemblage. The succession of reactions with garnet pseudomorphosis into an Opx-Spl-Crd followed by the crystallization of an Ol-Crd assemblage is modelled in the petrogenetic grid calculation and correspond to an isobaric clockwise P-T path. Results from in situ LA-ICP-MS U-Th-Pb dating on monazite performed on the Grt-Spl bearing migmatite suggest a duration of partial melting bracketed between ca. 1932Ma and ca. 1898Ma. Zircon U-Th-Pb SIMS dating yield an age of a ca.1.92-1.94 Ga for the olivine-bearing migmatite and the adjacent gabbroic bodies. This age is interpreted as the timing for the very low pressure UHT metamorphism. This first occurrence of very low pressure UHT metamorphism bring new insight for the understanding of the UHT Khondalite Belt. Implications about spatial and temporal distribution of heat and UHT metamorphism in the orogenic crust are discussed.

Subsolidus cooling of mid-ocean ridge peridotites and implications for the oxygen fugacity of the oceanic upper mantle

NASA Astrophysics Data System (ADS)

Birner, S.; Davis, F. A.; Cottrell, E.; Warren, J. M.; Kelley, K. A.

2017-12-01

Peridotites dredged from mid-ocean ridges provide a window into the chemistry of Earth's upper mantle. At equilibrium, mineral assemblages within peridotite record intrinsic properties, including oxygen fugacity (fO2). During cooling below the solidus, however, reactions affect the chemical compositions and modal abundances of minerals, directly affecting the fO2 recorded by these mineral assemblages. The slow kinetics of subsolidus diffusion also prevent full re-equilibration of peridotite during cooling, and different reactions have different closure temperatures. As a result, peridotites measured at the surface record neither equilibrium nor asthenospheric conditions. In order to quantify the effect of subsolidus diffusion on fO2, we analyzed minerals from abyssal peridotites dredged from the Southwest Indian Ridge (SWIR), which we then used as a basis for modeling potential subsolidus reactions. We first examined exchange reactions where no modal changes occur. We considered both Fe-Mg exchange between olivine and spinel [1] and Al-Cr exchange between orthopyroxene and spinel [2], and combined these models with spinel oxybarometry [3] to determine the effect of these reactions on fO2. Our results indicate that as peridotites cool from 1300°C to 900°C, these exchange processes together increase recorded fO2 by 0.3 log units relative to the approach in which compositional changes are not considered. Some reactions additionally change mineral modal abundances during cooling, in particular the Tschermak exchange in orthopyroxene [2], which consumes olivine and Al-rich orthopyroxene and produces spinel and Al-poor orthopyroxene as temperature decreases. Depending on partitioning of Fe3+ between phases, this reaction may dilute the concentration of Fe3+ in spinel and decrease recorded fO2 as temperature decreases. Preliminary results suggest that the magnitude of this effect is strongly sensitive to both initial spinel mode and partitioning of Fe3+ between orthopyroxene and spinel. Finally, we compare the fO2 recorded by SWIR peridotites to the fO2 recorded by basalts, projected to source conditions. [1] Li et al., 1995; [2] Voigt and von der Handt, 2011; [3] Davis et al., 2017

Interaction of peridotite with Ca-rich carbonatite melt at 3.1 and 6.5 GPa: Implication for merwinite formation in upper mantle, and for the metasomatic origin of sublithospheric diamonds with Ca-rich suite of inclusions

NASA Astrophysics Data System (ADS)

Sharygin, Igor S.; Shatskiy, Anton; Litasov, Konstantin D.; Golovin, Alexander V.; Ohtani, Eiji; Pokhilenko, Nikolay P.

2018-03-01

We performed an experimental study, designed to reproduce the formation of an unusual merwinite + olivine-bearing mantle assemblage recently described as a part of a Ca-rich suite of inclusions in sublithospheric diamonds, through the interaction of peridotite with an alkali-rich Ca-carbonatite melt, derived from deeply subducted oceanic crust. In the first set of experiments, we studied the reaction between powdered Mg-silicates, olivine and orthopyroxene, and a model Ca-carbonate melt (molar Na:K:Ca = 1:1:2), in a homogeneous mixture, at 3.1 and 6.5 GPa. In these equilibration experiments, we observed the formation of a merwinite + olivine-bearing assemblage at 3.1 GPa and 1200 °C and at 6.5 GPa and 1300-1400 °C. The melts coexisting with this assemblage have a low Si and high Ca content (Ca# = molar 100 × Ca/(Ca + Mg) > 0.57). In the second set of experiments, we investigated reaction rims produced by interaction of the same Ca-carbonate melt (molar Na:K:Ca = 1:1:2) with Mg-silicate, olivine and orthopyroxene, single crystals at 3.1 GPa and 1300 °C and at 6.5 GPa and 1400 °C. The interaction of the Ca-carbonate melt with olivine leads to merwinite formation through the expected reaction: 2Mg2SiO4 (olivine) + 6CaCO3 (liquid) = Ca3MgSi2O8 (merwinite) + 3CaMg(CO3)2 (liquid). Thus, our experiments confirm the idea that merwinite in the upper mantle may originate via interaction of peridotite with Ca-rich carbonatite melt, and that diamonds hosting merwinite may have a metasomatic origin. It is remarkable that the interaction of the Ca-carbonate melt with orthopyroxene crystals does not produce merwinite both at 3.1 and 6.5 GPa. This indicates that olivine grain boundaries are preferable for merwinite formation in the upper mantle.

What killed Frame Lake? A precautionary tale for urban planners.

PubMed

Gavel, Melody J; Patterson, R Timothy; Nasser, Nawaf A; Galloway, Jennifer M; Hanna, Bruce W; Cott, Peter A; Roe, Helen M; Falck, Hendrik

2018-01-01

Frame Lake, located within the city of Yellowknife, Northwest Territories, Canada, has been identified as requiring significant remediation due to its steadily declining water quality and inability to support fish by the 1970s. Former gold mining operations and urbanization around the lake have been suspected as probable causes for the decline in water quality. While these land-use activities are well documented, little information is available regarding their impact on the lake itself. For this reason, Arcellinida, a group of shelled protozoans known to be reliable bioindicators of land-use change, were used to develop a hydroecological history of the lake. The purpose of this study was to use Arcellinida to: (1) document the contamination history of the lake, particularly related to arsenic (As) associated with aerial deposition from mine roaster stacks; (2) track the progress of water quality deterioration in Frame Lake related to mining, urbanization and other activities; and (3) identify any evidence of natural remediation within the lake. Arcellinida assemblages were assessed at 1-cm intervals through the upper 30 cm of a freeze core obtained from Frame Lake. The assemblages were statistically compared to geochemical and loss-on-ignition results from the core to document the contamination and degradation of conditions in the lake. The chronology of limnological changes recorded in the lake sediments were derived from 210 Pb, 14 C dating and known stratigraphic events. The progress of urbanization near the lake was tracked using aerial photography. Using Spearman correlations, the five most significant environmental variables impacting Arcellinida distribution were identified as minerogenics, organics, As, iron and mercury ( p  < 0.05; n  = 30). Based on CONISS and ANOSIM analysis, three Arcellinida assemblages are identified. These include the Baseline Limnological Conditions Assemblage (BLCA), ranging from 17-30 cm and deposited in the early Holocene >7,000 years before present; the As Contamination Assemblage (ACA), ranging from 7-16 cm, deposited after ∼1962 when sedimentation began in the lake again following a long hiatus that spanned to the early Holocene; and the Eutrophication Assemblage (EA), ranging from 1-6 cm, comprised of sediments deposited after 1990 following the cessation of As and other metal contaminations. The EA developed in response to nutrient-rich waters entering the lake derived from the urbanization of the lake catchment and a reduction in lake circulation associated with the development at the lake outlet of a major road, later replaced by a causeway with rarely open sluiceways. The eutrophic condition currently charactering the lake-as evidenced by a population explosion of eutrophication indicator taxa Cucurbitella tricuspis -likely led to a massive increase in macrophyte growth and winter fish-kills. This ecological shift ultimately led to a system dominated by Hirudinea (leeches) and cessation of the lake as a recreational area.

Genotypic characterization and assessment of infectivity of human waterborne pathogens recovered from oysters and estuarine waters in Brazil.

PubMed

Leal, Diego Averaldo Guiguet; Souza, Doris Sobral Marques; Caumo, Karin Silva; Fongaro, Gislaine; Panatieri, Lua Ferreira; Durigan, Maurício; Rott, Marilise Brittes; Barardi, Célia Regina Monte; Franco, Regina Maura Bueno

2018-06-15

Waterborne, food-borne and sewage-borne pathogens are a major global concern, with the annual recurrence, most notably during the summer, of outbreaks of gastroenteritis of unconfirmed etiology associated with recreational activities in marine environments. The consumption of contaminated water-based foodstuffs is also related to outbreaks of human illness. The main goals of the present study were: i) to identify the genetic assemblages of Giardia duodenalis cysts in growing and depurated oysters destined for human consumption on the southern coast of São Paulo, Brazil; ii) to verify the main circulating G. duodenalis assemblages and their subtypes in different brackish waters used for the production of mollusks and for recreational purposes; iii) to track the contamination of growing and depurated oysters by the human adenovirus and identify the infectivity of adenoviral particles recovered from oysters before and after depuration; iv) to evaluate the occurrence and genotype of the free-living amoebae of the genus Acanthamoeba in brackish water and oysters from all the sites described above. Four sampling sites in the Cananeia estuary were selected to search for pathogenic and amphizoic protozoa (Giardia and Acanthamoeba respectively): site 1: oyster growth, site 2: catchment water (before UV depuration procedure), site 3: filter backwash (filtration stage of water treatment) and site 4: oyster depuration tank. Oysters at sites 1 and 4 were evaluated for the presence of adenovirus (HAdV). Analysis consisted of conventional microbiological as well as molecular methods. Giardia duodenalis were detected in all the water sites analyzed and the molecular analysis revealed that sub-assemblage AII was the most frequently distributed throughout the estuarine environment, although one sample was identified as belonging to the assemblage C. Acanthamoeba were also isolated from different locations of the estuarine area, and were detected at all the analyzed sites. The majority of isolates belonged to the T3 genotype, while the T4 genotype was identified once. The sequencing reaction of Giardia duodenalis revealed the contamination of three batches of depurated oysters by the sub-assemblage AII. With respect to viruses, seven batches of oysters (four growing and three depurated) were found to be harboring infectious HAdV particles when submitted to plaque assay. Overall, the results of the sequencing reactions combined with the plaque assay revealed that the isolates of Giardia duodenalis and the infectious HAdV particles identified in oyster tissues have the potential to infect humans and pose a threat if consumed raw or lightly cooked. This is the first report on the sub-assemblage AII identified in oysters which are submitted to a cleaning and disinfection procedure prior to human consumption in Brazil. Acanthamoeba specific genotypes were also identified for the first time in a recreational estuarine area in Brazil, contributing to knowledge of their molecular and environmental epidemiology, which is considered scarce even in marine and estuarine areas of the world. Copyright © 2018 Elsevier Ltd. All rights reserved.

Microbial physiology-based model of ethanol metabolism in subsurface sediments

NASA Astrophysics Data System (ADS)

Jin, Qusheng; Roden, Eric E.

2011-07-01

A biogeochemical reaction model was developed based on microbial physiology to simulate ethanol metabolism and its influence on the chemistry of anoxic subsurface environments. The model accounts for potential microbial metabolisms that degrade ethanol, including those that oxidize ethanol directly or syntrophically by reducing different electron acceptors. Out of the potential metabolisms, those that are active in the environment can be inferred by fitting the model to experimental observations. This approach was applied to a batch sediment slurry experiment that examined ethanol metabolism in uranium-contaminated aquifer sediments from Area 2 at the U.S. Department of Energy Field Research Center in Oak Ridge, TN. According to the simulation results, complete ethanol oxidation by denitrification, incomplete ethanol oxidation by ferric iron reduction, ethanol fermentation to acetate and H 2, hydrogenotrophic sulfate reduction, and acetoclastic methanogenesis: all contributed significantly to the degradation of ethanol in the aquifer sediments. The assemblage of the active metabolisms provides a frame work to explore how ethanol amendment impacts the chemistry of the environment, including the occurrence and levels of uranium. The results can also be applied to explore how diverse microbial metabolisms impact the progress and efficacy of bioremediation strategies.

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas

PubMed Central

Thiriet, Pierre; Di Franco, Antonio; Francour, Patrice

2017-01-01

Monitoring fish assemblages is needed to assess whether Marine Protected Areas (MPAs) are meeting their conservation and fisheries management goals, as it allows one to track the progress of recovery of exploited species and associated communities. Underwater Visual Census techniques (UVC) are used to monitor fish assemblages in MPAs. UVCs should be adapted to fish abundance, body-size and behaviour, which can strongly affect fish detectability. In Mediterranean subtidal habitats, however, UVC strip transects of one surface area (25x5 m2) are commonly used to survey the whole fish assemblage, from large shy fish to small crypto-benthic fish. Most high trophic level predators (HTLPs) are large shy fish which rarely swim close to divers and, consequently, their abundance may be under-estimated with commonly used transects. Here, we propose an improvement to traditional transect surveys to better account for differences in behaviour among and within species. First, we compared the effectiveness of combining two transect surface areas (large: 35x20 m2; medium: 25x5 m2) in quantifying large, shy fish within and outside Mediterranean MPAs. We identified species-specific body-size thresholds defining a smaller and a larger size class better sampled by medium and large transects respectively. Combining large and medium transects provided more accurate biomass and species richness estimates for large, shy species than using medium transects alone. We thus combined the new approach with two other transect surface areas commonly used to survey crypto-benthic (10x1 m2) and necto-benthic (25x5 m2) species in order to assess how effectively MPAs protection the whole fish assemblage. We verified that MPAs offer significant protection for HTLPs, their response in terms of biomass and density increase in MPAs was always higher in magnitude than other functional groups. Inside MPAs, the contribution of HTLP reached >25% of total fish biomass, against < 2% outside MPAs. Surveys with multiple transect surface areas allow for a more realistic assessment of the structure of the whole fish assemblage and better assessment of potential recovery of HTLPs within reserves of HTLP. PMID:28594836

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas.

PubMed

Prato, Giulia; Thiriet, Pierre; Di Franco, Antonio; Francour, Patrice

2017-01-01

Monitoring fish assemblages is needed to assess whether Marine Protected Areas (MPAs) are meeting their conservation and fisheries management goals, as it allows one to track the progress of recovery of exploited species and associated communities. Underwater Visual Census techniques (UVC) are used to monitor fish assemblages in MPAs. UVCs should be adapted to fish abundance, body-size and behaviour, which can strongly affect fish detectability. In Mediterranean subtidal habitats, however, UVC strip transects of one surface area (25x5 m2) are commonly used to survey the whole fish assemblage, from large shy fish to small crypto-benthic fish. Most high trophic level predators (HTLPs) are large shy fish which rarely swim close to divers and, consequently, their abundance may be under-estimated with commonly used transects. Here, we propose an improvement to traditional transect surveys to better account for differences in behaviour among and within species. First, we compared the effectiveness of combining two transect surface areas (large: 35x20 m2; medium: 25x5 m2) in quantifying large, shy fish within and outside Mediterranean MPAs. We identified species-specific body-size thresholds defining a smaller and a larger size class better sampled by medium and large transects respectively. Combining large and medium transects provided more accurate biomass and species richness estimates for large, shy species than using medium transects alone. We thus combined the new approach with two other transect surface areas commonly used to survey crypto-benthic (10x1 m2) and necto-benthic (25x5 m2) species in order to assess how effectively MPAs protection the whole fish assemblage. We verified that MPAs offer significant protection for HTLPs, their response in terms of biomass and density increase in MPAs was always higher in magnitude than other functional groups. Inside MPAs, the contribution of HTLP reached >25% of total fish biomass, against < 2% outside MPAs. Surveys with multiple transect surface areas allow for a more realistic assessment of the structure of the whole fish assemblage and better assessment of potential recovery of HTLPs within reserves of HTLP.

The US nuclear reaction data network. Summary of the first meeting, March 13 & 14 1996

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1996-03-01

The first meeting of the US Nuclear Reaction Data Network (USNRDN) was held at the Colorado School of Mines, March 13-14, 1996 chaired by F. Edward Cecil. The Agenda of the meeting is attached. The Network, its mission, products and services; related nuclear data and data networks, members, and organization are described in Attachment 1. The following progress reports from the members of the USNRDN were distributed prior to the meeting and are given as Attachment 2. (1) Measurements and Development of Analytic Techniques for Basic Nuclear Physics and Nuclear Applications; (2) Nuclear Reaction Data Activities at the National Nuclearmore » Data Center; (3) Studies of nuclear reactions at very low energies; (4) Nuclear Reaction Data Activities, Nuclear Data Group; (5) Progress in Neutron Physics at Los Alamos - Experiments; (6) Nuclear Reaction Data Activities in Group T2; (7) Progress Report for the US Nuclear Reaction Data Network Meeting; (8) Nuclear Astrophysics Research Group (ORNL); (9) Progress Report from Ohio University; (10) Exciton Model Phenomenology; and (11) Progress Report for Coordination Meeting USNRDN.« less

Hydrothermal ore-forming processes in the light of studies in rock- buffered systems: I. Iron-copper-zinc-lead sulfide solubility relations

USGS Publications Warehouse

Hemley, J.J.; Cygan, G.L.; Fein, J.B.; Robinson, G.R.; d'Angelo, W. M.

1992-01-01

Experimental studies, using cold-seal and extraction vessel techniques, were conducted on Fe, Pb, Zn, and Cu sulfide solubilities in chloride soultions at temperatures from 300?? to 700??C and pressures from 0.5 to 2 kbars. The solutions were buffered in pH by quartz monzonite and the pure potassium feldspar-muscovite-quartz assemblage and in fS2-fO2 largely by the assemblage pyrite-pyrrhotite-magnetite. Solubilities increase with increasing temperature and total chloride, and decrease with increasing pressure. The effect of increasing chloride concentration on solubility reflects primarily a shift to lower pH via the silicate buffer reactions. Similarity in behaviour with respect to the temperature and pressure of Fe, Zn, and Pb sulfide solubilities points to similarity in chloride speciation, and the neutral species appear to be dominant in the high-temperature region. -from Authors

Brucite-driven CO2 uptake in serpentinized dunites (Ligurian Ophiolites, Montecastelli, Tuscany)

NASA Astrophysics Data System (ADS)

Boschi, Chiara; Dini, Andrea; Baneschi, Ilaria; Bedini, Federica; Perchiazzi, Natale; Cavallo, Andrea

2017-09-01

Understanding the mechanism of serpentinite weathering at low temperature - that involves carbonate formation - has become increasingly important because it represents an analog study for a cost-efficient carbon disposal strategy (i.e. carbon mineralization technology or mineral Carbon dioxide Capture and Storage, CCS). At Montecastelli (Tuscany, Italy), on-going spontaneous mineral CO2 sequestration is enhanced by brucite-rich serpentinized dunites. The dunites are embedded in brucite-free serpentinized harzburgites that belong to the ophiolitic Ligurian Units (Northern Apennine thrust-fold belt). Two main serpentinization events produced two distinct mineral assemblages in the reactive dunite bodies. The first assemblage consists of low-T pseudomorphic, mesh-textured serpentine, Fe-rich brucite (up to 20 mol.% Fe(OH)2) and minor magnetite. This was overprinted by a non-pseudomorphic, relatively high-T assemblage consisting of serpentine, Fe-poor brucite (ca. 4 mol% Fe(OH)2) and abundant magnetite. The harzburgite host rock developed a brucite-free paragenesis made of serpentine and magnetite. Present-day interaction of serpentinized dunites with slightly acidic and oxidizing meteoric water, enhances brucite dissolution and leads to precipitation of both Mg-Fe layered double hydroxides (coalingite-pyroaurite, LDHs) and hydrous Mg carbonates (hydromagnesite and nesquehonite). In contrast, the brucite-free serpentinized harzburgites are not affected by the carbonation process. In the serpentinized dunites, different carbonate minerals form depending on brucite composition (Fe-rich vs Fe-poor). Reactions in serpentinized dunites containing Fe-rich brucite produce a carbonate assemblage dominated by LDHs and minor amount of hydromagnesite. Serpentinites with a Fe-poor brucite assemblage contain large amounts of hydromagnesite and minor LDHs. Efficiency of CO2 mineral sequestration is different in the two cases owing to the distinct carbon content of LDHs (ca. 1.5 wt.%) and hydromagnesite (ca. 10 wt.%). Here, for the first time, we link the mineral composition of serpentinized ultramafic rocks to carbonate formation, concluding that Fe-poor brucite maximizes the mineral CCS efficiency.

High-pressure granulites in the Fuping Complex of the central North China Craton: Metamorphic P-T-t evolution and tectonic implications

NASA Astrophysics Data System (ADS)

Qian, Jiahui; Yin, Changqing; Zhang, Jian; Ma, Li; Wang, Luojuan

2018-04-01

Mafic granulites in the Fuping Complex occur as lenses or boudins within high-grade TTG (Trondhjemite-Tonalite-Granodiorite) gneisses. Petrographic observations reveal four generations of mineral assemblage in the granulites: an inclusion assemblage of hornblende + plagioclase + ilmenite + quartz within garnet core; an inferred peak assemblage composed of garnet ± hornblende + plagioclase + clinopyroxene + rutile/ilmenite + quartz; a decompression assemblage characterized by symplectites of clinopyroxene ± orthopyroxene + plagioclase, coronae of plagioclase ± clinopyroxene ± hornblende around embayed garnet porphyroblasts or a two-pyroxene association; and a late amphibolite-facies retrogressive assemblage. Two representative samples were used for pseudosection modeling in NCFMASHTO model system to determine their metamorphic evolution. The results show that these granulites experienced a high-pressure stage of metamorphism with peak P-T conditions of 12-13 kbar and 760-800 °C (Pmax) and a post-peak history under P-T conditions of ∼9.0 kbar and 805-835 °C (Tmax), indicating a nearly isothermal decompression process (ITD) with a slight heating. Metamorphic evolution from the Pmax to the Tmax is predicted to be dominated by garnet breakdown through continuous metamorphic reactions of garnet + quartz ± diopside = hornblende + plagioclase + liquid and garnet + quartz + hornblende = plagioclase + diopside + liquid + orthopyroxene. Further metamorphic evolution after the Tmax is dominated by cooling, suggesting that high-pressure (HP) granulites may also exist in the Fuping Complex. Metamorphic zircons in the Fuping HP mafic granulites have left inclined REE patterns, Ti contents of 1.68-6.88 ppm and crystallization temperatures of 602-712 °C. SIMS zircon U-Pb dating on these zircons yields 207Pb/206Pb ages of 1891 ± 14 Ma and 1849 ± 6 Ma, interpreted to represent the cooling stage of metamorphism. The P-T-t evolution of the Fuping HP mafic granulites records well the protracted Paleoproterozoic orogenic event occurred in the central North China Craton.

Structural context and variation of ocean plate stratigraphy, Franciscan Complex, California: insight into mélange origins and subduction-accretion processes

NASA Astrophysics Data System (ADS)

Wakabayashi, John

2017-12-01

The transfer (accretion) of materials from a subducting oceanic plate to a subduction-accretionary complex has produced rock assemblages recording the history of the subducted oceanic plate from formation to arrival at the trench. These rock assemblages, comprising oceanic igneous rocks progressively overlain by pelagic sedimentary rocks (chert and/or limestone) and trench-fill clastic sedimentary rocks (mostly sandstone, shale/mudstone), have been called ocean plate stratigraphy (OPS). During accretion of OPS, megathrust slip is accommodated by imbricate faults and penetrative strain, shortening the unit and leading to tectonic repetition of the OPS sequence, whereas OPS accreted at different times are separated by non-accretionary megathrust horizons. The Franciscan subduction complex of California accreted episodically over a period of over 150 million years and incorporated OPS units with a variety of characteristics separated by non-accretionary megathrust horizons. Most Franciscan OPS comprises MORB (mid-ocean-ridge basalt) progressively overlain by chert and trench-fill clastic sedimentary rocks that are composed of variable proportions of turbidites and siliciclastic and serpentinite-matrix olistostromes (sedimentary mélanges). Volumetrically, the trench-fill component predominates in most Franciscan OPS, but some units have a significant component of igneous and pelagic rocks. Ocean island basalt (OIB) overlain by limestone is less common than MORB-chert assemblages, as are abyssal serpentinized peridotite slabs. The earliest accreted OPS comprises metabasite of supra-subduction zone affinity imbricated with smaller amounts of metaultramafic rocks and metachert, but lacking a clastic component. Most deformation of Franciscan OPS is localized along discrete faults rather than being distributed in the form of penetrative strain. This deformation locally results in block-in-matrix tectonic mélanges, in contrast to the sedimentary mélanges making up part of the clastic OPS component. Such tectonic mélanges may include blocks and matrix derived from the olistostromes. Franciscan subduction and OPS accretion initiated in island arc crust at about 165-170 Ma, after which MORB and OIB were subducted and accreted following a long (tens of mega-ampere) gap with little or no accretion. Following subduction initiation, a ridge crest approached the trench but probably went dormant prior to its subduction (120-125 Ma), after which the subducted oceanic crust became progressively older until about 95 Ma. From 95 Ma, the age of subducted oceanic crust decreased progressively until arrival of the Pacific-Farallon spreading center led to termination of subduction and conversion to a transform plate boundary.

Ancient charcoal as a natural archive for paleofire regime and vegetation change in the Mayumbe, Democratic Republic of the Congo

NASA Astrophysics Data System (ADS)

Hubau, Wannes; Van den Bulcke, Jan; Kitin, Peter; Mees, Florias; Baert, Geert; Verschuren, Dirk; Nsenga, Laurent; Van Acker, Joris; Beeckman, Hans

2013-09-01

Charcoal was sampled in four soil profiles at the Mayumbe forest boundary (DRC). Five fire events were recorded and 44 charcoal types were identified. One stratified profile yielded charcoal assemblages around 530 cal yr BP and > 43.5 cal ka BP in age. The oldest assemblage precedes the period of recorded anthropogenic burning, illustrating occasional long-term absence of fire but also natural wildfire occurrences within tropical rainforest. No other charcoal assemblages older than 2500 cal yr BP were recorded, perhaps due to bioturbation and colluvial reworking. The recorded paleofires were possibly associated with short-lived climate anomalies. Progressively dry climatic conditions since ca. 4000 cal yr BP onward did not promote paleofire occurrence until increasing seasonality affected vegetation at the end of the third millennium BP, as illustrated by a fire occurring in mature rainforest that persisted until around 2050 cal yr BP. During a drought episode coinciding with the 'Medieval Climate Anomaly', mature rainforest was locally replaced by woodland savanna. Charcoal remains from pioneer forest indicate that fire hampered forest regeneration after climatic drought episodes. The presence of pottery shards and oil-palm endocarps associated with two relatively recent paleofires suggests that the effects of climate variability were amplified by human activities.

Extreme diagenesis displayed by Pliocene-Pleistocene Calcareous Nannofossils in IODP Hole 1396A, adjacent to Montserrat Island in the Lesser Antilles

NASA Astrophysics Data System (ADS)

Aljahdali, M. H.; Behzad, A.; Missimer, T. M.; Wise, S. W.; Scientists, E.

2013-12-01

Adjacent to Montserrat Island in the Lesser Antilles of the Caribbean Sea, Integrated Ocean Drilling Program (IODP) Site 1396 recovered lower Pliocene to Pleistocene calcareous nannofossil assemblages (CN11 to CN15) that range between common to abundant and display a variety of preservations. High-resolution Scanning Electron Microscopy (SEM) observation of calcareous nannofossil assemblages in selected samples from Hole 1396A, shows severe diagenesis (overgrowth and/or dissolution) even near the top of the sequence. The nannofossil assemblages in this relatively shallow basin (e.g., 800 m) reveal abnormal diagenesis for such young specimens that are quite similar to the heavy overgrowths and dissolution generally seen only in older deposits (e.g., Cretaceous). Our hypothesis is that volcanic activity in the region probably induced this extreme diagenesis. A more detailed examination of these samples should provide a better understanding of the progression of carbonate diagenesis in this basin. The nannofossil biostratigraphy and magnetostratigraphy at Site 1396 also suggest lower sedimentation rates in the Pleistocene than in the Pliocene. A comparison site (ODP Leg 165 Site 1000) in the Caribbean Sea also shows a similar sedimentation-rate pattern. This we interpret as a regional event caused by the closure of the Central American Seaway.

Clastic dikes of the Hatrurim basin (western flank of the Dead Sea) as natural analogues of alkaline concretes: Mineralogy, solution chemistry, and durability

NASA Astrophysics Data System (ADS)

Sokol, E. V.; Gaskova, O. L.; Kozmenko, O. A.; Kokh, S. N.; Vapnik, E. A.; Novikova, S. A.; Nigmatulina, E. N.

2014-11-01

This study shows that the mineral assemblages from clastic dikes in areas adjacent to the Dead Sea graben may be considered as natural analogues of alkaline concretes. The main infilling material of the clastic dikes is composed of well-sorted and well-rounded quartz sand. The cement of these hard rocks contains hydroxylapophyllite, tacharanite, calcium silicate hydrates, opal, calcite, and zeolite-like phases, which is indicative of a similarity of the natural cementation processes and industrial alkaline concrete production from quartz sands and industrial alkaline cements. The quartz grains exhibit a variety of reaction textures reflecting the interaction with alkaline solutions (opal and calcium hydrosilicate overgrowths; full replacement with apophyllite or thomsonite + apophyllite). The physicochemical analysis and reconstruction of the chemical composition of peralkaline Ca, Na, and K solutions that formed these assemblages reveal that the solutions evolved toward a more stable composition of zeolite-like phases, which are more resistant to long-term chemical weathering and atmospheric corrosion. The 40Ar/39Ar age of 6.2 ± 0.7 Ma obtained for apophyllite provides conclusive evidence for the high corrosion resistance of the assemblages consisting of apophyllite and zeolite-like phases.

Interfacing supercritical fluid reaction apparatus with on-line liquid chromatography: monitoring the progress of a synthetic organic reaction performed in supercritical fluid solution.

PubMed

Ramsey, Edward D; Li, Ben; Guo, Wei; Liu, Jing Y

2015-04-03

An interface has been developed that connects a supercritical fluid reaction (SFR) vessel directly on-line to a liquid chromatograph. The combined SFR-LC system has enabled the progress of the esterification reaction between phenol and benzoyl chloride to synthesize phenyl benzoate in supercritical fluid carbon dioxide solution to be dynamically monitored. This was achieved by the periodic SFR-LC analysis of samples directly withdrawn from the esterification reaction mixture. Using the series of SFR-LC analysis results obtained for individual esterification reactions, the reaction progress profile for each esterification reaction was obtained by expressing the measured yield of phenyl benzoate as a function of reaction time. With reaction temperature fixed at 75°C, four sets (n=3) of SFR-LC reaction progress profiles were obtained at four different SFR pressures ranging from 13.79 to 27.58 MPa. The maximum SFR yield obtained for phenyl benzoate using a standard set of reactant concentrations was 85.2% (R.S.D. 4.2%) when the reaction was performed at 13.79 MPa for 90 min. In comparison, a phenyl benzoate yield of less than 0.3% was obtained using the same standard reactant concentrations after 90 min reaction time at 75°C using either: heptane, ethyl acetate or acetonitrile as conventional organic reaction solvents. Copyright © 2015 Elsevier B.V. All rights reserved.

Glaucophane chloritoid-bearing assemblages from NE Oman: petrologic significance and a petrogenetic grid for high P metapelites

NASA Astrophysics Data System (ADS)

El-Shazly, A. K.; Liou, J. G.

1991-04-01

Pelitic layers and lenses interbedded with blueschists and eclogites in Saih Hatat, NE Oman contain chloritoid- and sodic amphibole-bearing mineral assemblages that are useful for reconstructing the P-T history of the area. Textural and mineral chemical relations suggest that coexisting glaucophane (Gln) and chloritoid (Ctd) formed at the expense of chlorite (Chl)+paragonite (Pg) and later broke down to garnet (Gt)+Pg during prograde metamorphism according to the reaction: Gln+Ctd+Qz=Gt+Pg+H2O. During retrogression, Gln and Chl first formed at the expense of Gt and Pg, followed by the breakdown of Ctd and Gt to Chl. The final stages of retrogression are marked by the breakdown of Gln to an aggregate of Chl+albite (Ab). A projection from quartz (Qz), H2O and phengite (Ph) on the (Al2O3+Fe2O3)-(FeO+MgO)-Na2O plane in the system NFMASH is best suited for the representation of the phase relations in high P metapelites. Petrogenetic grids for the model systems NMASH and NFASH were calculated using program GEO-CALC (Berman et al. 1987) and its database (Berman 1988) after the retrieval of S{i/o}and ΔH{f/o}for Gln and Ctd by mathematical programming and calculating all possible reactions among Gln, Ctd, Chl, jadeite (Jd), Ab, Gt, Pg, talc (Tc), pyrophyllite (Prl) and kyanite (Ky). The calculated petrogenetic grid for the system NFASH shows that Fe-Ctd and ferroglaucophane coexist at P>6.5 kbar and T<525°C, whereas the assemblage: Ct-Gln-Pg is stable between 435 and 630°C and P>6 kbar. This grid is consistent with the P-T estimates for high P metapelites from Oman, New Caledonia, Seward Peninsula, Ile de Groix, Sifnos and Peloponnese, where Gln+Ctd bearing units are interbedded with cofacial mafic blueschists and eclogites. The grid also explains the observed textural relations in the metapelites of Oman, and is consistent with the “clockwise” P-T path proposed for this area, but differs from the grids of Guiraud et al. (1990) in showing a larger stability field for Gln+Ctd that overlaps with the stability fields of Jd+Qz as well as Ab. The petrogenetic grid calculated for the system NMASH shows that Mg-Ctd+Gln-bearing assemblages require unusually low geothermal gradients to form in metapelites. It also shows that Mg-rich Ctd+Tc coexist at high pressures over a wider P-T range than predicted by Guiraud et al. (1990). This grid can therefore be applied to high P metamorphic assemblages from the eastern and western Alps.

Forward Analyses of Dehydration Reactions in Mafic Rocks Along the P-T Trajectories of the Subducting Slabs

NASA Astrophysics Data System (ADS)

Kuwatani, T.; Okamoto, A.; Toriumi, M.

2005-12-01

Fluids in the subduction zone play an important role in magmatism, metamorphism, and mechanical processes involving seismic activity. Additionally, recent geophysical researches found low-frequency tremors which may be related to the movement of fluid (Obara, 2002) and a zone of high Poisson_fs ratio which reflects high pore fluid pressure (Kodaira et al.,2004) in the Southwest Japan fore-arc. It is widely accepted that these fluids are supplied by the dehydration of hydrous metamorphic minerals in the subducting oceanic plate. Although many previous studies attempted to estimate the water content of the subducting oceanic crust experimentally and theoretically (e.g., Schmidt and Poli, 1998; Hacker et al., 2003), there have been no studies which quantify the continuous dehydration reactions in detail. The aim of this study is to quantify the progress of the continuous dehydration reactions of mafic rocks in the condition of greenschist facies, corresponding to low-intermediate depth (10-50km) of warm subduction zone. We use the differential thermodynamics (Spear 1993) which include mass balance to predict the continuous metamorphic reaction history of mafic rocks along the P-T trajectory of the subducting slab. With fixed bulk chemical composition the thermodynamic system is divariant, as specified in Duhem_fs theorem. In differential thermodynamics, applying a series of changes in pressure and temperature (ΔP and ΔT, respectively) from initial conditions (P0, T0, X0s, M0s), we can trace ΔXs and ΔMs, that is, the progress (history) of the metamorphic reactions along the arbitrary P-T trajectory (Thermodynamic forward modeling). According to Okamoto and Toriumi, 2001, we modeled the greenschist/ blueschist/ (epidote -) amphibolite assemblage of mafic rocks, which consist of the following phases: Amphibole ± Epidote ± Chlorite + Plagioclase + Quartz + Fluid (H2O), in the system of Na2O - CaO - MgO - FeO - Fe2O3 - Al2O3 - SiO2 - H2O. The reference compositions and modes of minerals were assumed according to the natural sample of greenschist which has MORB-like bulk composition (Hacker et al. 2003). The reference temperature and pressure were set to be 300°C, 0.3GPa. Calculations were performed along the P-T paths of the Southwest Japan (4MPa/°C) and the Cape Mendocino (the North California, 2MPa/°C) predicted by Yamasaki and Seno, 2003. As a result, the water production rates have the peak depths at the boundary between the greenschist facies and the epidote-amphibolite facies in the Southwest Japan, and at the boundary between the greenschist facies and the amphibolite facies in the Cape Mendocino, respectively. Chlorite decomposition is the main dehydration reaction. These peak depths correspond to the zone of low frequency tremors, high Poisson_fs ratio and active seismicity (30-50km) in the Southwest Japan, and active seismicity (10-20km) in the Cape Mendocino, respectively.

The evolution of volcano-hosted geothermal systems based on deep wells from Karaha-Telaga Bodas, Indonesia

USGS Publications Warehouse

Moore, J.N.; Allis, R.G.; Nemcok, M.; Powell, T.S.; Bruton, C.J.; Wannamaker, P.E.; Raharjo, I.B.; Norman, D.I.

2008-01-01

Temperature and pressure surveys, fluid samples, and petrologic analyses of rock samples from deep drill holes at the Karaha - Telaga Bodas geothermal field on the volcanic ridge extending northward from Galunggung Volcano, West Java, have provided a unique opportunity to characterize the evolution of an active volcano-hosted geothermal system. Wells up to 3 km in depth have encountered temperatures as high as 353??C and a weakly altered granodiorite that intruded to within 2 to 3 km of the surface. The intrusion is shallowest beneath the southern end of the field where an acid lake overlies a nearly vertical low resistivity structure (<10 ohm-m) defined by magnetotelluric measurements. This structure is interpreted to represent a vapor-dominated chimney that provides a pathway to the surface for magmatic gases. Four distinct hydrothermal mineral assemblages document the evolution of the geothermal system and the transition from liquid- to vapor-dominated conditions. The earliest assemblage represents the initial liquid-dominated system generated during emplacement of the granodiorite between 5910 ?? 76 and 4200 ?? 150 y BP. Tourmaline, biotite, actinolite, epidote and clay minerals were deposited contemporaneously at progressively greater distances from the intrusive contact (assemblage 1). At 4200 ?? 150 y BP, flank collapse and the formation of the volcano's crater, Kawah Galunggung, resulted in catastrophic decompression and boiling of the hydrothermal fluids. This event initiated development of the modern vapor-dominated regime. Chalcedony and then quartz were deposited as the early low salinity liquids boiled (assemblage 2). Both vapor- and liquid-rich fluid inclusions were trapped in the quartz crystals. Liquid-rich fluid inclusions from the southern part of the field record salinities ranging from 0 to 26 weight percent NaCl- CaCl2 equivalent and locally contain fluorite daughter crystals. We suggest, based on temperature-salinity relationships and evidence of boiling, that these fluids were progressively concentrated as steam was lost from the system. However, mixing with fluids derived from the underlying intrusion or generated during the formation of acid SO4 water on the vapor-dominated chimney margins could have contributed to the observed salinities. As pressures declined, CO2- and SO4-rich steam-heated water drained downward, depositing anhydrite and calcite (assemblage 3) in the fractures, limiting further recharge. Fluid inclusions with salinities up to 31 weight percent NaCl equivalent were trapped in these minerals as the descending water vaporized. The final assemblage is represented by precipitates of NaCl, KCl and FeClx deposited on rock surfaces in portions of the vapor-dominated zone that boiled dry. Vapor-dominated conditions extend over a distance of at least 10 km and to depths below sea level. Deep wells drilled into the underlying liquid-dominated reservoir in the northern and central part of the volcanic ridge produce low salinity fluids representing recent recharge of meteoric and steam-heated water. The evolution of volcanic-hosted vapor-dominated geothermal systems can be described by a five stage model. Stage 1 involves the formation of an over-pressured liquid-dominated geothermal system soon after magmatic intrusion. In Stages 2 and 3, pressures progressively decrease, and a curtain of steam-heated water surrounding a magmatic vapor-dominated chimney at 350??C and 14 ?? 2 MPa develops. The relatively low pressure near the base of the chimney causes liquid inflow adjacent to the intrusion and the development of a secondary marginal vapor-dominated zone. In Stage 4, the magmatic vapor discharge from the intrusion becomes small, vapor pressure declines, and the secondary vapor-dominated zone expands above the intrusion. In Stage 5, the vapor-dominated zone floods because heat from the intrusion is insufficient to boil all liquid inflow. A more common, liquid-dominated volcanic-hosted system the

The potential role of magmatic gases in the genesis of Illinois- Kentucky fluorspar deposits: implications from chemical reaction path modeling

USGS Publications Warehouse

Plumlee, G.S.; Goldhaber, M.B.; Rowan, E.L.

1995-01-01

Presents results of reaction path calculations using the chemical speciation and reaction path program SOLVEQ and CHILLER to model possible fluorite deposition mechanisms in the Illinois-Kentucky fluorspar district. The results indicate that the fluids responsible for Illinois-Kentucky fluorspar mineralization were most likely quite acidic (pH < 4) and rich in fluorine in order to produce the fluorite-rich, dolomite-poor mineral assemblages and extensive dissolution of host limestones. A possible source for the acid and fluorine may have been HF-rich gases which were expelled from alkalic magmas and then incorporated by migrating basinal brines. An analysis of the geologic setting of other fluorite deposits and districts worldwide suggests that involvement of magmatic gases is probable for many of these districts as well. -from Authors

Progression in High School Students' (Aged 16-18) Conceptualizations about Chemical Reactions in Solution.

ERIC Educational Resources Information Center

Boo, Hong-Kwen; Watson, J. R.

2001-01-01

Explores the development over time of students' understandings of the concept of chemical reaction in the context of two familiar reactions in solution. Based on interviews (n=48), results show that students made some progress in their understanding of the concept of chemical reaction but some fundamental misconceptions remained. (Author/MM)

Geochemical models of metasomatism in ultramafic systems: Serpentinization, rodingitization, and sea floor carbonate chimney precipitation

USGS Publications Warehouse

Palandri, J.L.; Reed, M.H.

2004-01-01

In a series of water-rock reaction simulations, we assess the processes of serpentinization of harzburgite and related calcium metasomatism resulting in rodingite-type alteration, and seafloor carbonate chimney precipitation. At temperatures from 25 to 300??C (P = 10 to 100 bar), using either fresh water or seawater, serpentinization simulations produce an assemblage commonly observed in natural systems, dominated by serpentine, magnetite, and brucite. The reacted waters in the simulations show similar trends in composition with decreasing water-rock ratios, becoming hyper-alkaline and strongly reducing, with increased dissolved calcium. At 25??C and w/r less than ???32, conditions are sufficiently reducing to yield H2 gas, nickel-iron alloy and native copper. Hyperalkalinity results from OH- production by olivine and pyroxene dissolution in the absence of counterbalancing OH- consumption by alteration mineral precipitation except at very high pH; at moderate pH there are no stable calcium minerals and only a small amount of chlorite forms, limited by aluminum, thus allowing Mg2+ and Ca2+ to accumulate in the aqueous phase in exchange for H+. The reducing conditions result from oxidation of ferrous iron in olivine and pyroxene to ferric iron in magnetite. Trace metals are computed to be nearly insoluble below 300??C, except for mercury, for which high pH stabilizes aqueous and gaseous Hg??. In serpentinization by seawater at 300??C, Ag, Au, Pd, and Pt may approach ore-forming concentrations in sulfide complexes. Simulated mixing of the fluid derived from serpentinization with cold seawater produces a mineral assemblage dominated by calcite, similar to recently discovered submarine, ultramafic rock-hosted, carbonate mineral deposits precipitating at hydrothermal vents. Simulated reaction of gabbroic or basaltic rocks with the hyperalkaline calcium- and aluminum-rich fluid produced during serpentinization at 300??C yields rodingite-type mineral assemblages, including grossular, clinozoisite, vesuvianite, prehnite, chlorite, and diopside. ?? 2004 Elsevier Ltd.

Response of fish assemblages to declining acidic deposition in Adirondack Mountain lakes, 1984-2012

NASA Astrophysics Data System (ADS)

Baldigo, B. P.; Roy, K. M.; Driscoll, C. T.

2016-12-01

Adverse effects of acidic deposition on the chemistry and fish communities were evident in Adirondack Mountain lakes during the 1980s and 1990s. Fish assemblages and water chemistry in 43 Adirondack Long-Term Monitoring (ALTM) lakes were sampled by the Adirondack Lakes Survey Corporation and the New York State Department of Environmental Conservation during three periods (1984-87, 1994-2005, and 2008-12) to document regional impacts and potential biological recovery associated with the 1990 amendments to the 1963 Clean Air Act (CAA). We assessed standardized data from 43 lakes sampled during the three periods to quantify the response of fish-community richness, total fish abundance, and brook trout (Salvelinus fontinalis) abundance to declining acidity that resulted from changes in U.S. air-quality management between 1984 and 2012. During the 28-year period, mean acid neutralizing capacity (ANC) increased significantly from 3 to 30 μeq/L and mean inorganic monomeric Al concentrations decreased significantly from 2.22 to 0.66 μmol/L, yet mean species richness, all species or total catch per net night (CPNN), and brook trout CPNN did not change significantly in the 43 lakes. Regression analyses indicate that fishery metrics were not directly related to the degree of chemical recovery and that brook trout CPNN may actually have declined with increasing ANC. While the richness of fish communities increased with increasing ANC as anticipated in several Adirondack lakes, observed improvements in water quality associated with the CAA have generally failed to produce detectable shifts in fish assemblages within a large number of ALTM lakes. Additional time may simply be needed for biological recovery to progress, or else more proactive efforts may be necessary to restore natural fish assemblages in Adirondack lakes in which water chemistry is steadily recovering from acidification.

Upper mantle fluids evolution, diamond formation, and mantle metasomatism

NASA Astrophysics Data System (ADS)

Huang, F.; Sverjensky, D. A.

2017-12-01

During mantle metasomatism, fluid-rock interactions in the mantle modify wall-rock compositions. Previous studies usually either investigated mineral compositions in xenoliths and xenocrysts brought up by magmas, or examined fluid compositions preserved in fluid inclusions in diamonds. However, a key study of Panda diamonds analysed both mineral and fluid inclusions in the diamonds [1] which we used to develop a quantitative characterization of mantle metasomatic processes. In the present study, we used an extended Deep Earth Water model [2] to simulate fluid-rock interactions at upper mantle conditions, and examine the fluids and mineral assemblages together simultaneously. Three types of end-member fluids in the Panda diamond fluid inclusions include saline, rich in Na+K+Cl; silicic, rich in Si+Al; and carbonatitic, rich in Ca+Mg+Fe [1, 3]. We used the carbonatitic end-member to represent fluid from a subducting slab reacting with an excess of peridotite + some saline fluid in the host environment. During simultaneous fluid mixing and reaction with the host rock, the logfO2 increased by about 1.6 units, and the pH increased by 0.7 units. The final minerals were olivine, garnet and diamond. The Mg# of olivine decreased from 0.92 to 0.85. Garnet precipitated at an early stage, and its Mg# also decreased with reaction progress, in agreement with the solid inclusions in the Panda diamonds. Phlogopite precipitated as an intermediate mineral and then disappeared. The aqueous Ca, Mg, Fe, Si and Al concentrations all increased, while Na, K, and Cl concentrations decreased during the reaction, consistent with trends in the fluid inclusion compositions. Our study demonstrates that fluids coming from subducting slabs could trigger mantle metasomatism, influence the compositions of sub-lithospherc cratonic mantle, precipitate diamonds, and change the oxygen fugacity and pH of the upper mantle fluids. [1] Tomlinson et al. EPSL (2006); [2] Sverjensky, DA et al., GCA (2014), Huang, F, Ph. D. thesis, Johns Hopkins University, (2017); [3] Shirey et al., Rev. Mineral. Geochem. (2013)

Melting relations of model lherzolite in the system CaO-MgO-Al2O3-SiO2 at 2.4-3.4 GPa and the generation of komatiites

NASA Astrophysics Data System (ADS)

Gudfinnsson, Gudmundur H.; Presnall, Dean C.

1996-12-01

Isobarically invariant phase relations in the CaO-MgO-Al2O3-SiO2 system (CMAS) involving the lherzolite phase assemblage in equilibrium with liquid have been determined at 2.4-3.4 GPa. These phase relations form the solidus of model lherzolite in the CMAS system. Our data, which include determinations of all phase compositions, are in excellent agreement with the 3.0 and 4.0 GPa points of Milholland and Presnall [1991] and Davis and Schairer [1965], respectively. The invariant transition on the P-T solidus curve from spinel- to garnet-lherzolite at 3.0 GPa, 1575°C [Milholland and Presnall, 1991], is confirmed, but we observe that the theoretically required temperature depression on the solidus curve at this point is not experimentally detectable. Composition trends along the solidus take a sharp turn at the transition. In the spinel-lherzolite stability field, melt compositions become increasingly Fo-normative and less En-normative with increasing pressure, but become less Fo-normative and more pyroxenitic as pressure increases in the garnet-lherzolite stability field. Calculated melting reactions indicate that forsterite is in reaction relationship with the melt up to 3.0 GPa. Orthopyroxene is also in reaction relationship at pressures higher than just over 2.8 GPa and is the only phase in reaction relationship with the melt in the garnet-lherzolite stability field. Comparison of the normative compositions and the CaO/Al2O3 values of the komatiites of Gorgona Island and of the Reliance Formation in Zimbabwe with the compositions of liquids along the solidus of model lherzolite in the CMAS system indicates that the former komatiites were generated at pressures close to 3.7 GPa and the latter at close to 4.5 GPa, assuming that the melt generation occurred in the presence of the complete garnet-lherzolite assemblage.

CUMULATE ROCKS ASSOCIATED WITH CARBONATE ASSIMILATION, HORTAVÆR COMPLEX, NORTH-CENTRAL NORWAY

NASA Astrophysics Data System (ADS)

Barnes, C. G.; Prestvik, T.; Li, Y.

2009-12-01

The Hortavær igneous complex intruded high-grade metamorphic rocks of the Caledonian Helgeland Nappe Complex at ca. 466 Ma. The complex is an unusual mafic-silicic layered intrusion (MASLI) because the principal felsic rock type is syenite and because the syenite formed in situ rather than by deep-seated partial melting of crustal rocks. Magma differentiation in the complex was by assimilation, primarily of calc-silicate rocks and melts with contributions from marble and semi-pelites, plus fractional crystallization. The effect of assimilation of calcite-rich rocks was to enhance stability of fassaitic clinopyroxene at the expense of olivine, which resulted in alkali-rich residual melts and lowering of silica activity. This combination of MASLI-style emplacement and carbonate assimilation produced three types of cumulate rocks: (1) Syenitic cumulates formed by liquid-crystal separation. As sheets of mafic magma were loaded on crystal-rich syenitic magma, residual liquid was expelled, penetrating the overlying mafic sheets in flame structures, and leaving a cumulate syenite. (2) Reaction cumulates. Carbonate assimilation, illustrated by a simple assimilation reaction: olivine + calcite + melt = clinopyroxene + CO2 resulted in cpx-rich cumulates such as clinopyroxenite, gabbro, and mela-monzodiorite, many of which contain igneous calcite. (3) Magmatic skarns. Calc-silicate host rocks underwent partial melting during assimilation, yielding a Ca-rich melt as the principal assimilated material and permitting extensive reaction with surrounding magma to form Kspar + cpx + garnet-rich ‘cumulate’ rocks. Cumulate types (2) and (3) do not reflect traditional views of cumulate rocks but instead result from a series of melt-present discontinuous (peritectic) reactions and partial melting of calc-silicate xenoliths. In the Hortavær complex, such cumulates are evident because of the distinctive peritectic cumulate assemblages. It is unclear whether assimilation of ‘normal’ silicate rocks results in peritectic assemblages, or whether they could be identified as such if they exist.

Fossil diatoms and neogene paleolimnology

USGS Publications Warehouse

Platt, Bradbury J.

1988-01-01

Diatoms have played an important role in the development of Neogene continental biostratigraphy and paleolimnology since the mid-19th Century. The history of progress in Quaternary diatom biostratigraphy has developed as a result of improved coring techniques that enable sampling sediments beneath existing lakes coupled with improved chronological control (including radiometric dating and varve enumeration), improved statistical treatment of fossil diatom assemblages (from qualitative description to influx calculations of diatom numbers or volumes), and improved ecological information about analogous living diatom associations. The last factor, diatom ecology, is the most critical in many ways, but progresses slowly. Fortunately, statistical comparison of modern diatom assemblages and insightful studies of the nutrient requirements of some common freshwater species are enabling diatom paleolimnologists to make more detailed interpretations of the Quaternary record than had been possible earlier, and progress in the field of diatom biology and ecology will continue to refine paleolimnological studies. The greater age and geologic setting of Tertiary diatomaceous deposits has prompted their study in the contexts of geologic history, biochronology and evolution. The distribution of diatoms of marine affinities in continental deposits has given geologists insights about tectonism and sea-level change, and the distribution of distinctive (extinct?) diatoms has found utilization both in making stratigraphic correlations between outcrops of diatomaceous deposits and in various types of biochronological studies that involve dating deposits in different areas. A continental diatom biochronologic scheme will rely upon evolution, such as the appearance of new genera within a family, in combination with regional environmental changes that are responsible for the wide distribution of distinctive diatom species. The increased use of the scanning electron microscope for the detailed descriptions of fossil diatoms will provide the basis for making more accurate correlations and identifications, and the micromorphological detail for speculations about evolutionary relationships. ?? 1988.

Sorption of Eu(III) on granite: EPMA, LA-ICP-MS, batch and modeling studies.

PubMed

Fukushi, Keisuke; Hasegawa, Yusuke; Maeda, Koushi; Aoi, Yusuke; Tamura, Akihiro; Arai, Shoji; Yamamoto, Yuhei; Aosai, Daisuke; Mizuno, Takashi

2013-11-19

Eu(III) sorption on granite was assessed using combined microscopic and macroscopic approaches in neutral to acidic conditions where the mobility of Eu(III) is generally considered to be high. Polished thin sections of the granite were reacted with solutions containing 10 μM of Eu(III) and were analyzed using EPMA and LA-ICP-MS. On most of the biotite grains, Eu enrichment up to 6 wt % was observed. The Eu-enriched parts of biotite commonly lose K, which is the interlayer cation of biotite, indicating that the sorption mode of Eu(III) by the biotite is cation exchange in the interlayer. The distributions of Eu appeared along the original cracks of the biotite. Those occurrences indicate that the prior water-rock interaction along the cracks engendered modification of biotite to possess affinity to the Eu(III). Batch Eu(III) sorption experiments on granite and biotite powders were conducted as functions of pH, Eu(III) loading, and ionic strength. The macroscopic sorption behavior of biotite was consistent with that of granite. At pH > 4, there was little pH dependence but strong ionic strength dependence of Eu(III) sorption. At pH < 4, the sorption of Eu(III) abruptly decreased with decreased pH. The sorption behavior at pH > 4 was reproducible reasonably by the modeling considering single-site cation exchange reactions. The decrease of Eu(III) sorption at pH < 4 was explained by the occupation of exchangeable sites by dissolved cationic species such as Al and Fe from granite and biotite in low-pH conditions. Granites are complex mineral assemblages. However, the combined microscopic and macroscopic approaches revealed that elementary reactions by a single mineral phase can be representative of the bulk sorption reaction in complex mineral assemblages.

Mass transfer and fluid evolution in late-metamorphic veins, Rhenish Massif (Germany): insight from alteration geochemistry and fluid-mineral equilibria modeling

NASA Astrophysics Data System (ADS)

Marsala, Achille; Wagner, Thomas

2016-08-01

Element mobility and fluid-rock interaction related to the formation of late-metamorphic quartz veins have been studied by combination of mineral chemistry, whole-rock geochemistry, mass balance analysis and fluid-mineral equilibria modeling. The quartz veins are hosted by very low-grade metasedimentary rocks of the fold-and-thrust belt of the Rhenish Massif (Germany). The veins record two stages of evolution, a massive vein filling assemblage with elongate-blocky quartz, chlorite, apatite and albite, and a later open space filling assemblage with euhedral crystals of quartz, ankerite-dolomite and minor calcite and sulfides. Detailed mass balance analysis of an alteration profile adjacent to a representative quartz vein demonstrates that element mobility is restricted to the proximal zone. The most important element changes are gain of Ca, Fe, Mg, Mn, P and CO2, and loss of Si, K and Na. The data demonstrate that wall-rock carbonation is one of the main alteration features, whereas mobility of Si, K and Na are related to dissolution of quartz and destruction of detrital feldspar and muscovite. The whole-rock geochemical data, in conjunction with fluid composition data and pressure-temperature estimates, were used as input for fluid-mineral equilibria modeling in the system Si-Al-Fe-Mg-Ca-Na-K-C-S-O-H-B-F-Cl. Modeling involved calculation of rock-buffered fluid compositions over the temperature interval 100-500 °C, and reaction-path simulations where a rock-buffered high-temperature fluid reacts with fresh host-rocks at temperatures of 400, 300 and 200 °C. Calculated rock-buffered fluid compositions demonstrate that retrograde silica solubility is a strong driving force for quartz leaching in the temperature-pressure window of 380-450 °C and 0.5 kbar. These conditions overlap with the estimated temperatures for the initial stage of vein formation. Reaction-path models show that high-temperature alteration can produce the observed silica leaching, suggesting that fast advection of external hot fluids from deeper crustal levels was essential for the early stage of vein formation. Fluid advection must have occurred as multiple pulses, which allowed for periods of influx of fluids that leached quartz, alternating with periods of cooling and quartz precipitation in the veins. Reaction-path models at high temperatures (300-400 °C) do not produce carbonate alteration, whereas fluid-rock reaction at 200 °C produces carbonate alteration, consistent with the temperature estimates for the late-stage vein carbonate assemblage. Comparison between modeling results and geochemical data suggests that the observed alteration features are the product of fluid-rock reaction under conditions where the external fluid gradually cooled down and evolved with time. The results of this study highlight the importance of late-orogenic fluid migration for the formation of quartz vein arrays in fold-and-thrust belts.

Multiple Reaction Geobarometry for Gabbroic Rocks

NASA Astrophysics Data System (ADS)

Ziberna, L.; Green, E. C. R.; Blundy, J. D.

2016-12-01

Gabbroic rocks are fundamental constituents of the Earth's crust. Given that they can form over a wide range of depths, from the base of the crust to shallow magma storage zones, estimating the pressure (P) of formation of any gabbroic rock found either in exposed crustal sections or as xenolith included in magmas is critically important. Model errors of commonly used geobarometers for gabbroic rocks are > 3 kbar (standard error of estimate), which is unhelpfully high considering the typical P range to be investigated (e.g., < 10 kbar for island arcs). Most likely, the difficulty to extract a clear P signal is partly related to the fact that most thermobarometers use either empirical formulations based on the composition of a single phase, or a single reaction involving only two phases, the latter being often characterized by a relatively low volume change. A multiple-reaction approach employing an internally consistent thermodynamic dataset potentially offers more precise results, as it allows all of the pressure and temperature information in a mineral assemblage for which thermodynamic models exist to be used simultaneously. In this work we evaluated the reliability of the average P method (avP; a multiple-reaction method included in thermocalc; Powell & Holland, 2008, J. Metamorphic Geol. 26, 155-179), applied using some of the latest internally-consistent dataset and activity-composition relations (e.g., Green et al. 2016; doi:10.1111/jmg.12211). The avP method uses a least square minimization technique to calculate the optimal P, taking into account the correlated uncertainties in the pressures predicted by each reaction in an independent set. We tested the method and thermodynamic models using a dataset of phase equilibrium experiments in basaltic systems and well-equilibrated natural samples from a variety of geodynamic settings. We then made minor modifications to the activity-composition models and thermodynamic properties of clinopyroxene and spinel in order to improve the accuracy and precision of the results given by avP. Thanks to the careful selection of experimental data and assessment of the diagnostic utilities in thermocalc, our approach is capable of calculating pressures with 1σ uncertainties < 1.5 kbar for natural assemblages equilibrated in the range 1.0-9.0 kbar.

Clinopyroxene precursors to amphibole sponge in arc crust

PubMed Central

Smith, Daniel J.

2014-01-01

The formation of amphibole cumulates beneath arc volcanoes is a key control on magma geochemistry, and generates a hydrous lower crust. Despite being widely inferred from trace element geochemistry as a major lower crustal phase, amphibole is neither abundant nor common as a phenocryst phase in arc lavas and erupted pyroclasts, prompting some authors to refer to it as a ‘cryptic’ fractionating phase. This study provides evidence that amphibole develops by evolved melts overprinting earlier clinopyroxene—a near-ubiquitous mineral in arc magmas. Reaction-replacement of clinopyroxene ultimately forms granoblastic amphibole lithologies. Reaction-replacement amphiboles have more primitive trace element chemistry (for example, lower concentrations of incompatible Pb) than amphibole phenocrysts, but still have chemistries suitable for producing La/Yb and Dy/Yb ‘amphibole sponge’ signatures. Amphibole can fractionate cryptically as reactions between melt and mush in lower crustal ‘hot zones’ produce amphibole-rich assemblages, without significant nucleation and growth of amphibole phenocrysts. PMID:25002269

Toxic metal(loid) speciation during weathering of iron sulfide mine tailings under semi-arid climate

PubMed Central

Root, Robert A.; Hayes, Sarah M.; Hammond, Corin M.; Maier, Raina M.; Chorover, Jon

2015-01-01

Toxic metalliferous mine-tailings pose a significant health risk to ecosystems and neighboring communities from wind and water dispersion of particulates containing high concentrations of toxic metal(loid)s (e.g., Pb, As, Zn). Tailings are particularly vulnerable to erosion before vegetative cover can be reestablished, i.e., decades or longer in semi-arid environments without intervention. Metal(loid) speciation, linked directly to bioaccessibility and lability, is controlled by mineral weathering and is a key consideration when assessing human and environmental health risks associated with mine sites. At the semi-arid Iron King Mine and Humboldt Smelter Superfund site in central Arizona, the mineral assemblage of the top 2 m of tailings has been previously characterized. A distinct redox gradient was observed in the top 0.5 m of the tailings and the mineral assemblage indicates progressive transformation of ferrous iron sulfides to ferrihydrite and gypsum, which, in turn weather to form schwertmannite and then jarosite accompanied by a progressive decrease in pH (7.3 to 2.3). Within the geochemical context of this reaction front, we examined enriched toxic metal(loid)s As, Pb, and Zn with surficial concentrations 41.1, 10.7, 39.3 mM kg-1 (3080, 2200, and 2570 mg kg-1), respectively. The highest bulk concentrations of As and Zn occur at the redox boundary representing a 1.7 and 4.2 fold enrichment relative to surficial concentrations, respectively, indicating the translocation of toxic elements from the gossan zone to either the underlying redox boundary or the surface crust. Metal speciation was also examined as a function of depth using X-ray absorption spectroscopy (XAS). The deepest sample (180 cm) contains sulfides (e.g., pyrite, arsenopyrite, galena, and sphalerite). Samples from the redox transition zone (25-54 cm) contain a mixture of sulfides, carbonates (siderite, ankerite, cerrusite, and smithsonite) and metal(loid)s sorbed to neoformed secondary Fe phases, principally ferrihydrite. In surface samples (0-35 cm), metal(loid)s are found as sorbed species or incorporated into secondary Fe hydroxysulfate phases, such as schwertmannite and jarosites. Metal-bearing efflorescent salts (e.g., ZnSO4·nH2O) were detected in the surficial sample. Taken together, these data suggest the bioaccessibility and lability of metal(loid)s are altered by mineral weathering, which results in both the downward migration of metal(loid)s to the redox boundary, as well as the precipitation of metal salts at the surface. PMID:26549929

Performance of Glutamate Dehydrogenase and Triose Phosphate Isomerase Genes in the Analysis of Genotypic Variability of Isolates of Giardia duodenalis from Livestocks

PubMed Central

Fava, Natália M. N.; Soares, Rodrigo M.; Scalia, Luana A. M.; Kalapothakis, Evanguedes; Pena, Isabella F.; Vieira, Carlos U.; Faria, Elaine S. M.; Cunha, Maria J.; Couto, Talles R.; Cury, Márcia Cristina

2013-01-01

Giardia duodenalis is a small intestinal protozoan parasite of several terrestrial vertebrates. This work aims to assess the genotypic variability of Giardia duodenalis isolates from cattle, sheep and pigs in the Southeast of Brazil, by comparing the standard characterization between glutamate dehydrogenase (gdh) and triose phosphate isomerase (tpi) primers. Fecal samples from the three groups of animals were analyzed using the zinc sulphate centrifugal flotation technique. Out of 59 positive samples, 30 were from cattle, 26 from sheep and 3 from pigs. Cyst pellets were stored and submitted to PCR and nested-PCR reactions with gdh and tpi primers. Fragment amplification of gdh and tpi genes was observed in 25 (42.4%) and 36 (61.0%) samples, respectively. Regarding the sequencing, 24 sequences were obtained with gdh and 20 with tpi. For both genes, there was a prevalence of E specific species assemblage, although some isolates have been identified as A and B, by the tpi sequencing. This has also shown a larger number of heterogeneous sequences, which have been attribute to mixed infections between assemblages B and E. The largest variability of inter-assemblage associated to the frequency of heterogeneity provided by tpi sequencing reinforces the polymorphic nature of this gene and makes it an excellent target for studies on molecular epidemiology. PMID:24308010

Mount St. Augustine volcano fumarole wall rock alteration: Mineralogy, zoning, composition and numerical models of its formation process

USGS Publications Warehouse

Getahun, A.; Reed, M.H.; Symonds, R.

1996-01-01

Intensely altered wall rock was collected from high-temperature (640??C) and low-temperature (375??C) vents at Augustine volcano in July 1989. The high-temperature altered rock exhibits distinct mineral zoning differentiated by color bands. In order of decreasing temperature, the color bands and their mineral assemblages are: (a) white to grey (tridymite-anhydrite); (b) pink to red (tridymite-hematite-Fe hydroxide-molysite (FeCl3) with minor amounts of anhydrite and halite); and (c) dark green to green (anhydrite-halite-sylvite-tridymite with minor amounts of molysite, soda and potash alum, and other sodium and potassium sulfates). The alteration products around the low-temperature vents are dominantly cristobalite and amorphous silica with minor potash and soda alum, aphthitalite, alunogen and anhydrite. Compared to fresh 1986 Augustine lava, the altered rocks exhibit enrichments in silica, base metals, halogens and sulfur and show very strong depletions in Al in all alteration zones and in iron, alkali and alkaline earth elements in some of the alteration zones. To help understand the origins of the mineral assemblages in altered Augustine rocks, we applied the thermochemical modeling program, GASWORKS, in calculations of: (a) reaction of the 1987 and 1989 gases with wall rock at 640 and 375??C; (b) cooling of the 1987 gas from 870 to 100??C with and without mineral fractionation; (c) cooling of the 1989 gas from 757 to 100??C with and without mineral fractionation; and (d) mixing of the 1987 and 1989 gases with air. The 640??C gas-rock reaction produces an assemblage consisting of silicates (tridymite, albite, diopside, sanidine and andalusite), oxides (magnetite and hercynite) and sulfides (bornite, chalcocite, molybdenite and sphalerite). The 375??C gas-rock reaction produces dominantly silicates (quartz, albite, andalusite, microcline, cordierite, anorthite and tremolite) and subordinate amounts of sulfides (pyrite, chalcocite and wurtzite), oxides (magnetite), sulfates (anhydrite) and halides (halite). The cooling calculations produce: (a) anhydrite, halite, sylvite; (b) Cu, Mo, Fe and Zn sulfides; (c) Mg fluoride at high temperature (> 370??C); (d) chlorides, fluorides and sulfates of Mn, Fe, Zn, Cu and Al at intermediate temperature (170-370??C); and (e) hydrated sulfates, liquid sulfur, crystalline sulfur, hydrated sulfuric acid and water at low temperature ( 0.41 (> 628??C). This is followed by precipitation of sulfates of Fe, Cu, Pb, Zn and Al at lg/a ratios between 0.41 and -0.4 (628-178??C). At a lg/r ratio of < - 0.4 (178??C), anhydrous sulfates are replaced by their hydrated forms and hygroscopic sulfuric acid forms. At these low g/a ratios, hydrated sulfuric acid becomes the dominant phase in the system. Comparison of the thermochemical modeling results with the natural samples suggests that the alteration assemblages include: (1) minerals that precipitate from direct cooling of the volcanic gas; (2) phases that form by volcanic gases mixing with air; and (3) phases that form by volcanic gas-air-rock reaction. A complex interplay of the three processes produces the observed mineral zoning. Another implication of the numerical simulation results is that most of the observed incrustation and sublimate minerals apparently formed below 700??C.

Shock Pressures, Temperatures and Durations in L Chondrites: Constraints from Shock-Vein Mineralogy

NASA Astrophysics Data System (ADS)

Xie, Z.; Aramovish Weaver, C.; Decarli, P. S.; Sharp, T. G.

2003-12-01

Shock effects in meteorites provide a record of major impact events on meteorite parent bodies. Shock veins in chondrites, which result from local melting during shock loading, are the location of all high-pressure minerals. Shock veins contain igneous assemblages, produced by the crystallization of shock-induced melt, and metamorphic assemblages, produced by solid-state transformation in entrained host-rock clasts and wall rock. The mineralogy, distribution of high-pressure minerals and microstructures in shock veins provide a record of crystallization pressures and quench histories that can be used to constrain shock pressures and pulse duration. Here we report mineralogical and microstructural studies of shock-induced melt veins in L chondrites that provide insight into the impact history of the L-chondrite parent body. Eight L6 chondrites were investigated using FESEM and TEM and Raman spectroscopy: RC 106 (S6), Tenham (S6), Umbarger (S4-S6), Roy (S3-S5), Ramsdorf (S4), Kunashak (S4), Nakhon Pathon (S4) and La Lande (S4). Igneous melt-vein assemblages, combined with published phase equilibrium data (Agee et al. 1996), indicate crystallization pressures from less than 2.5 GPa for Kunashack and LaLande to approximately 25 GPa for Tenham. Because shock veins quench primarily by thermal conduction, crystallization starts at vein edges and progresses inward. Variation in the igneous assemblage across shock veins, combined with thermal modelling, provides constraints on quench times and pressure variation during quench. Most samples appear to have crystallized prior to shock release, whereas Kunashack and LaLande apparently crystallized after pressure release. RC 106 and Tenham (both S6), which have thick melt veins with uniform igneous assemblages, crystallized under equilibrium shock pressures of approximately 22-25 GPa during shock events that lasted at least 500 ms and 50ms, respectively. The fact that S6 samples do not appear to have crystallized at a pressures greater than about 25 GPa, suggest that the impacts that produced shock veins in chondrites had low relative impact velocities.

Benthic assemblages of mega epifauna on the Oregon continental margin

NASA Astrophysics Data System (ADS)

Hemery, Lenaïg G.; Henkel, Sarah K.; Cochrane, Guy R.

2018-05-01

Environmental assessment studies are usually required by a country's administration before issuing permits for any industrial activities. One of the goals of such environmental assessment studies is to highlight species assemblages and habitat composition that could make the targeted area unique. A section of the Oregon continental slope that had not been previously explored was targeted for the deployment of floating wind turbines. We carried out an underwater video survey, using a towed camera sled, to describe its benthic assemblages. Organisms were identified to the lowest taxonomic level possible and assemblages described related to the nature of the seafloor and the depth. We highlighted six invertebrate assemblages and three fish assemblages. For the invertebrates within flat soft sediments areas we defined three different assemblages based on primarily depth: a broad mid-depth (98-315 m) assemblage dominated by red octopus, sea pens and pink shrimps; a narrower mid-depth (250-270 m) assemblage dominated by box crabs and various other invertebrates; and a deeper (310-600 m) assemblage dominated by sea urchins, sea anemones, various snails and zoroasterid sea stars. The invertebrates on mixed sediments also were divided into three different assemblages: a shallow ( 100 m deep) assemblage dominated by plumose sea anemones, broad mid-depth (170-370 m) assemblage dominated by sea cucumbers and various other invertebrates; and, again, a narrower mid-depth (230-270 m) assemblage, dominated by crinoids and encrusting invertebrates. For the fish, we identified a rockfish assemblage on coarse mixed sediments at 170-370 m and another fish assemblage on smaller mixed sediments within that depth range (250-370 m) dominated by thornyheads, poachers and flatfishes; and we identified a wide depth-range (98-600 m) fish assemblage on flat soft sediments dominated by flatfishes, eelpouts and thornyheads. Three of these assemblages (the two broad fish assemblages and the deep flat soft sediments invertebrate assemblage) seem to represent deeper examples of assemblages already known on the Oregon continental shelf, especially on soft sediments, while the assemblages in the pockmarks habitat (the narrower depth ranges) might be unique to the area. This diversity of assemblages in a relatively small section of the Oregon continental upper slope and shelf shows the importance of environmental assessment studies in helping limit future impacts of industrial activities on benthic communities.

Parent-Body Modification of Chondritic Meteorites

NASA Technical Reports Server (NTRS)

Rubin, Alan

2003-01-01

This proposal focused on the parent-body modification of chondritic materials and substantial progress was made in the last year. A summary of the work accomplished during this period is discussed. The topics include: 1) Chromite-Plagioclase Assemblages in Ordinary Chondrites; 2) The Gujba Bencubbin-like meteorite fall; 3) NWA428: A rock that Experienced Impact-induced Annealing; 4) Spade: An Annealed H-chondrite Impact-melt Breccia; and 5) Post-shock Annealing in Ordinary Chondrites. A list of the papers submitted or published during the period is also presented.

Metamorphic conditions during formation of a metapelitic sillimanite-garnet gneiss from Clemence Massif, Prince Charles Mountains, East Antarctica

USGS Publications Warehouse

Corvino, A.F.; Boger, S.D.; Wilson, C.J.L.

2007-01-01

SiO2–H2O–TiO2–Fe2O3 (MnNCKFMASHTO). Calculated mineral equilibria for the appropriate bulk composition predict that the observed assemblage, of K-feldspar–garnet–quartz–sillimanite–biotite–ilmenite–rutile, stabilised at approximately 8–9 kbar and 760–790ºC. Reaction microstructures are rare, but the preservation of relic spinel inclusions in garnet indicates an earlier low-P, high-T component and possible anticlockwise path.

Listvenite logging on D/V CHIKYU: Hole BT1B, Oman Drilling Project

NASA Astrophysics Data System (ADS)

Kelemen, P. B.; Beinlich, A.; Morishita, T.; Greenberger, R. N.; Johnson, K. T. M.; Lafay, R.; Michibayashi, K.; Harris, M.; Phase I Science Party, T. O. D. P.

2017-12-01

Listvenite, quartz-carbonate altered ultramafic rock containing minor fuchsite (Cr-muscovite) forms by complete carbonation of peridotite and is thus an attractive objective for carbon mitigation studies. However, reaction controls and evolution of listvenite are still enigmatic. Here we present the first results of Phase 1 of the ICDP (International Continental Drilling Program) Oman Drilling Project and subsequent core logging using the analytical facilities on board the research vessel D/V CHIKYU. Hole BT1B contains 300 m of continuous drill core intersecting alluvium, listvenite-altered serpentinite, serpentinite, ophicarbonate and the underlying metamorphic sole of the Semail ophiolite, Oman. The drill core has been systematically investigated by visual core description, thin section petrography, X-ray fluorescence core logging, X-ray diffractometry, visible-shortwave infrared imaging spectroscopy and X-ray Computer Tomography. Our observations show that listvenite is highly variable in texture and color on the mm to m scale. Listvenite was visually categorized into 5 principal color groups: the dominant dark red (47 %), light red (19 %), orange (14 %), pale (2 %) and green (16 %). The presence of hematite/goethite results in dark reddish, red and orange hues. Light grey or pale colored listvenite lacks hematite and/or goethite veins and may represent the `true' listvenite. Green listvenite is characterized by the presence of cm-sized quartz-fuchsite intergrowths. Five zones of serpentinite, which vary in thickness between several tens of cm and 4 m, are intercalated within the massive listvenite of Hole BT1B. Gradational listvenite-serpentinite transition zones contain the ophicarbonate assemblage (magnesite + serpentine) and sometimes additional talc, representing intermediate carbonation reaction progress. Preservation of the former mesh texture and bastite after orthopyroxene in the listvenite suggest that the listvenite precursor had already been serpentinized prior to infiltration of the CO2-bearing alteration fluid.

Multilocus genotyping of human Giardia isolates suggests limited zoonotic transmission and association between assemblage B and flatulence in children.

PubMed

Lebbad, Marianne; Petersson, Ingvor; Karlsson, Lillemor; Botero-Kleiven, Silvia; Andersson, Jan O; Svenungsson, Bo; Svärd, Staffan G

2011-08-01

Giardia intestinalis is one of the most common diarrhea-related parasites in humans, where infection ranges from asymptomatic to acute or chronic disease. G. intestinalis consists of eight genetically distinct genotypes or assemblages, designated A-H, and assemblages A and B can infect humans. Giardiasis has been classified as a possible zoonotic disease but the role of animals in human disease transmission still needs to be proven. We tried to link different assemblages and sub-assemblages of G. intestinalis isolates from Swedish human patients to clinical symptoms and zoonotic transmission. Multilocus sequence-based genotyping of 207 human Giardia isolates using three gene loci: ß-giardin, glutamate dehydrogenase (gdh), and triose phosphate isomerase (tpi) was combined with assemblage-specific tpi PCRs. This analysis identified 73 patients infected with assemblage A, 128 with assemblage B, and six with mixed assemblages A+B. Multilocus genotypes (MLGs) were easily determined for the assemblage A isolates, and most patients with this genotype had apparently been infected through anthroponotic transmission. However, we also found evidence of limited zoonotic transmission of Giardia in Sweden, since a few domestic human infections involved the same assemblage A MLGs previously reported in Swedish cats and ruminants. Assemblage B was detected more frequently than assemblage A and it was also more common in patients with suspected treatment failure. However, a large genetic variability made determination of assemblage B MLGs problematic. Correlation between symptoms and assemblages was found only for flatulence, which was significantly more common in children less than six years of age infected with assemblage B. This study shows that certain assemblage A subtypes are potentially zoonotic and that flatulence is connected to assemblage B infections in young children. Determination of MLGs from assemblages A and B can be a valuable tool in outbreak situations and to help identify possible zoonotic transmission.

Multilocus Genotyping of Human Giardia Isolates Suggests Limited Zoonotic Transmission and Association between Assemblage B and Flatulence in Children

PubMed Central

Lebbad, Marianne; Petersson, Ingvor; Karlsson, Lillemor; Botero-Kleiven, Silvia; Andersson, Jan O.; Svenungsson, Bo; Svärd, Staffan G.

2011-01-01

Background Giardia intestinalis is one of the most common diarrhea-related parasites in humans, where infection ranges from asymptomatic to acute or chronic disease. G. intestinalis consists of eight genetically distinct genotypes or assemblages, designated A–H, and assemblages A and B can infect humans. Giardiasis has been classified as a possible zoonotic disease but the role of animals in human disease transmission still needs to be proven. We tried to link different assemblages and sub-assemblages of G. intestinalis isolates from Swedish human patients to clinical symptoms and zoonotic transmission. Methodology/Principal Findings Multilocus sequence-based genotyping of 207 human Giardia isolates using three gene loci: ß-giardin, glutamate dehydrogenase (gdh), and triose phosphate isomerase (tpi) was combined with assemblage-specific tpi PCRs. This analysis identified 73 patients infected with assemblage A, 128 with assemblage B, and six with mixed assemblages A+B. Multilocus genotypes (MLGs) were easily determined for the assemblage A isolates, and most patients with this genotype had apparently been infected through anthroponotic transmission. However, we also found evidence of limited zoonotic transmission of Giardia in Sweden, since a few domestic human infections involved the same assemblage A MLGs previously reported in Swedish cats and ruminants. Assemblage B was detected more frequently than assemblage A and it was also more common in patients with suspected treatment failure. However, a large genetic variability made determination of assemblage B MLGs problematic. Correlation between symptoms and assemblages was found only for flatulence, which was significantly more common in children less than six years of age infected with assemblage B. Conclusions/Significance This study shows that certain assemblage A subtypes are potentially zoonotic and that flatulence is connected to assemblage B infections in young children. Determination of MLGs from assemblages A and B can be a valuable tool in outbreak situations and to help identify possible zoonotic transmission. PMID:21829745

The fate of metaclinopyroxenite during serpentinite subduction

NASA Astrophysics Data System (ADS)

Padrón-Navarta, J. A.; Gómez-Pugnaire, M. T.; López Sánchez-Vizcaíno, V.; Garrido, C. J.; Marchesi, C.

2012-04-01

Subduction of the partially hydrated section of the lithosphere is widely accepted as the major water carrier to sub-arc depths. Geodynamic models and geochemical mass balances assume that this section is comprised almost exclusively by the maximum hydrated counterpart of harzburgite, i.e. antigorite-serpentinite. The common wisdom gained through the study of oceanic and continental lithospheric sequences indicates, however, that this assumption is an oversimplification and that the widespread occurrence of other lithologies, such as clinopyroxenites, should not be disregarded. It is obvious, however, that the role of these non-conventional lithologies in the subduction factory will also depend on their ability to record hydration and dehydration reactions. Here we report the textural and mineral assemblage evolution of clinopyroxene-tremolite bearing serpentinite, metaclinopyroxenite bodies and associated diopside-chlorite schists interlayered in serpentinites from the Cerro del Almirez (Betic Cordillera, Spain), the only place known where the high-pressure antigorite dehydration front is preserved (Trommsdorff et al., 1998; Padrón-Navarta et al., 2011). Cpx-Tr serpentinite bodies are unevenly distributed at the decametric scale in the serpentinite sequence and occurs as isoclinally foliated layers. Tremolite in these rocks was formed by the reaction: antigorite + diopside = tremolite + olivine + fluid [1] These rocks have been traditionally interpreted as strongly dismembered clinopyroxenite layers finely intermixed at the cm-scale with serpentinite. The following observations regarding the relationship between metaclinopyroxenite bodies and diopside-chlorite schists are, however, against this hypothesis. Detailed observations in almost undeformed coarse grained (cm-sized) metaclinopyroxenite bodies show that incipient transformation of mantle clinopyroxene occurs along former exsolution lamellae by the reaction: clinopyroxene + fluid = diopside + chlorite [2] Further deformation along these weak zones eventually results in the development of diopside-chlorite schists. The systematic lack of chlorite in Cpx-Tr serpentinite strongly suggests that these lithologies do not necessary represent an intermixing of antigorite-serpeninite with clinopyroxenite layers. Instead, they might be derived from more lherzolitic protoliths, where the Al-content in the mantle clinopyroxenes, and released during progressive metamorphism, was accommodated by antigorite (which can reach up to 3.5 wt. % Al2O3). Although rare, diopside-chlorite schists should then be considered as an important host for Ti and REE. Futhermore, the stability of this assemblage beyond the antigorite breakdown conditions has further implications for the deeper recycling of these elements in subduction zones. Padrón-Navarta, J.A., López Sánchez-Vizcaíno, V., Garrido, C.J., Gómez-Pugnaire, M.T., 2011. Metamorphic record of high-pressure dehydration of antigorite serpentinite to chlorite harzburgite in a subduction setting (Cerro del Almirez, Nevado-Filábride Complex, Southern Spain). J Petrology 52, 2047-2078. Trommsdorff, V., López Sánchez-Vizcaíno, V.L., Gómez-Pugnaire, M.T., Müntener, O, 1998. High pressure breakdown of antigorite to spinifex-textured olivine and orthopyroxene, SE Spain. Contrib Mineral Petr 132, 139-148.

Preliminary study on the L ate Cretaceous ostracods from continental scientific drilling SK1 in the Songliao Basin, NE China

NASA Astrophysics Data System (ADS)

Xi, Dangpeng; Qu, Haiying; Shi, Zhongye; Wan, Xiaoqiao

2017-04-01

Songliao Basin is one of the biggest lacustrine systems in Asia during Cretaceous age. Widespread deposits in the basin are mainly composed of clastic sediments which contain abundant fossils including gastropod, bivalves, ostracods, vertebrates and others. These well preserved ostracod fossils provide us valuable information about past climate changes and biotic responses in a greenhouse environment.The Cretaceous Continental Scientific Drilling in the Songliao Basin (SK1) offers a rare opportunity to study Late Cretaceous non-marine ostracod. The SK1 was drilled separately in two boreholes: the lower 959.55-meter-thick south core (SK1(s)), and the upper 1636.72-meter-thick north core (SK1 (n)), containing the Upper Quantou, Qingshankou, Yaojia, Nenjiang Formation, Sifangtai, Mingshui and lower Taikang formations. Here we establish high-resolution non-marine ostracod biostratigraphy based on SK1. 80 species belonging to 12 genera in the SK1(S) and 45 species assigned to 20 genera in the SK1(n) have been recovered. Nineteen ostracod assemblage zones have been recognized: 1. Mongolocypris longicaudata-Cypridea Assemblage Zone, 2.Triangulicypris torsuosus-Triangulicypris torsuosus. nota Assemblage Zone, 3. Cypridea dekhoinensis-Cypridea gibbosa Assemblage Zone, 4.Cypridea nota-Sunliavia tumida Assemblage Zone, 5.Cypridea edentula-Lycopterocypris grandis Assemblage Zone, 6.Cypridea fuyuensis-Triangulicypris symmetrica Assemblage Zone, 7.Triangulicypris vestilus-Triangulicypris fusiformis-Triangulicypris pumilis Assemblage Zone, 8.Cypridea panda-Mongolocypris obscura Assemblage Zone, 9. Cypridea exornata-Cypridea dongfangensis Assemblage Zone, 10.Cypridea favosa-Mongolocypris tabulata Assemblage Zone, 11.Cypridea formosa-Cypridea sunghuajiangensis Assemblage Zone, 12. Cypridea anonyma-Candona fabiforma Assemblage Zone, 13.Cypridea gracila-Cypridea gunsulinensis Assemblage Zone, 14.Mongolocypris magna-Mongolocypris heiluntszianensis Assemblage Zone, 15.Cypridea liaukhenensis-Cypridea stellata Assemblage Zone, 16. Ilyocyprimorpha-Limnocypridea sunliaonensis-Periacanthella Assemblage Zone, 17. Strumosia inandita Asemblage-Zone, 18.Talicypridea amoena-Metacypris kaitunensis-Ziziphocypris simakovi Assemblage Zone, 19.Ilyocypris Assemblage Zone. Assemblage Zone 1 to 18 are belong to late Cretaceous, but 19 might constrained to the Latest Maastrichtian to the Earliset Danian.

Benthic assemblages of mega epifauna on the Oregon continental margin

USGS Publications Warehouse

Hemery, Lenaïg G.; Henkel, Sarah K.; Cochrane, Guy R.

2018-01-01

Environmental assessment studies are usually required by a country's administration before issuing permits for any industrial activities. One of the goals of such environmental assessment studies is to highlight species assemblages and habitat composition that could make the targeted area unique. A section of the Oregon continental slope that had not been previously explored was targeted for the deployment of floating wind turbines. We carried out an underwater video survey, using a towed camera sled, to describe its benthic assemblages. Organisms were identified to the lowest taxonomic level possible and assemblages described related to the nature of the seafloor and the depth. We highlighted six invertebrate assemblages and three fish assemblages. For the invertebrates within flat soft sediments areas we defined three different assemblages based on primarily depth: a broad mid-depth (98–315 m) assemblage dominated by red octopus, sea pens and pink shrimps; a narrower mid-depth (250–270 m) assemblage dominated by box crabs and various other invertebrates; and a deeper (310–600 m) assemblage dominated by sea urchins, sea anemones, various snails and zoroasterid sea stars. The invertebrates on mixed sediments also were divided into three different assemblages: a shallow (~100 m deep) assemblage dominated by plumose sea anemones, broad mid-depth (170–370 m) assemblage dominated by sea cucumbers and various other invertebrates; and, again, a narrower mid-depth (230–270 m) assemblage, dominated by crinoids and encrusting invertebrates. For the fish, we identified a rockfish assemblage on coarse mixed sediments at 170–370 m and another fish assemblage on smaller mixed sediments within that depth range (250–370 m) dominated by thornyheads, poachers and flatfishes; and we identified a wide depth-range (98–600 m) fish assemblage on flat soft sediments dominated by flatfishes, eelpouts and thornyheads. Three of these assemblages (the two broad fish assemblages and the deep flat soft sediments invertebrate assemblage) seem to represent deeper examples of assemblages already known on the Oregon continental shelf, especially on soft sediments, while the assemblages in the pockmarks habitat (the narrower depth ranges) might be unique to the area. This diversity of assemblages in a relatively small section of the Oregon continental upper slope and shelf shows the importance of environmental assessment studies in helping limit future impacts of industrial activities on benthic communities.

The influence of crystallography and kinetics on phengite breakdown reactions in a low-pressure metamorphic aureole

NASA Astrophysics Data System (ADS)

Worden, R. H.; Droop, G. T. R.; Champness, P. E.

1992-04-01

A natural example of phengite that had undergone partial thermal decomposition at a pressure of about 0.5 kbar and a temperature of about 680° C in a contact aureole was exmined in the transmission electron microscope (TEM). Partially pseudomorphed phengites were found to consist of combinations of phengite, biotite, K-feldspar, mullite, sillimanite, spinel and cordierite. Different areas within individual, partially pseudomorphed, phengite grains show various degrees of reaction and different reaction products; the cores are the least reacted and the margins have reacted most. In the cores the assemblage Al-, Mg-enriched phengite+biotite +K-feldspar+mullite±spinel has formed, whereas the assemblage K-feldspar+mullite+sillimanite+spinel +biotite+cordierite has formed at the edges. According to our thermodynamic calculations, the breakdown of phengite should have produced cordierite+spinel +corundum+K-feldspar in regions isolated from the influx of SiO2 and cordierite+andalusite+quartz+K-feldspar in regions near the edge of the grains that were essentially saturated with SiO2. Chemical equilibrium was not achieved in any part of the partially pseudomorphed phengites on a micron scale or larger. Breakdown theoretically should have been complete by about 550° C; the reaction temperature was overstepped by at least 130° C for 20 25 years. The variations in the degree and type of reaction are probably due partly to the availability of suitable nucleation sites in different regions, partly to the need to remove H2O from reaction sites and partly to the influence of SiO2, which diffused into the grains during metamorphism. The presence of SiO2 lowers the equilibrium temperatures. Thus there is a higher driving force for breakdown near the grain boundaries than in the cores. Most of the products show an orientation relationship with the parent phengite and have consistent habit planes; they have their closest-packed planes and closest-packed directions parallel to one another and to those of phengite. Such relationships minimize the strain and surface energies at nucleation and favour most rapid nucleation and growth of the reaction products. The great structural similarity of biotite to phengite resulted in its having the highest rate of nucleation and growth of any product and it occurred in all areas of the phengite pseudomorphs studied. Mullite and sillimanite were produced metastably. Mullite has more rapid nucleation kinetics than other aluminosilicates because it is structurally disordered. Sillimanite formed rather than andalusite in regions of the partially pseudomorphed phengites where the reaction reached an advanced stage, because the reaction from phengite to andalusite requires an energetically unfavourable change in aluminium co-ordination state.

Study of photosensitization reaction progress in a 96 well plate with photosensitizer rich condition using Talaporfin sodium

NASA Astrophysics Data System (ADS)

Ogawa, Emiyu; Takahashi, Mei; Arai, Tsunenori

2013-02-01

To quantitatively investigate photosensitization reaction in vitro against myocardial cells with photosensitizer rich condition in solution using Talaporfin sodium in the well of a 96 well plate, we studied photosensitization reaction progress in this well. We have proposed non-thermal conduction block of myocardium tissue using the photosensitization reaction with laser irradiation shortly after Talaporfin sodium injection. In above situation, the photosensitizer is located outside the myocardial cells in high concentration. To understand interaction of the photosensitization reaction in which the photosensitizer distributes outside cells, the photosensitization reaction progress in the well was studied. Talaporfin sodium (799.69 MW) solution and a 663 nm diode laser were used. The photosensitizer solution concentrations of 12.5-37.5 μM were employed. The photosensitizer fluorescence with 0.29 W/cm2 in irradiance, which was optimized in previous cell death study, was measured during the laser irradiation until 40 J/cm2. The photosensitizer solution absorbance and dissolved oxygen pressure after the laser irradiation were also measured. We found that the photosensitization reaction progress had 2 distinctive phases of different reaction rate: rapid photosensitization reaction consuming dissolved oxygen and gentle photosensitization reaction with oxygen diffusion from the solution-air boundary. The dissolved oxygen pressure and photosensitizer solution absorbance were 30% and 80% of the initial values after the laser irradiation, respectively. Therefore, oxygen was rate-controlling factor of the photosensitization reaction in the well with the photosensitizer rich condition. In the oxygen diffusion phase, the oxygen pressure was maintained around 40 mmHg until the laser irradiation of 40 J/cm2 and it is similar to that of myocardium tissue in vivo. We think that our 96 well plate in vitro system may simulate PDT in myocardial tissue with photosensitization reaction parameters mentioned above.

Diverging Histories of the Liberty Creek and Iceberg Lake Blueschist Bodies, south central Alaska

NASA Astrophysics Data System (ADS)

Day, E. M.; Pavlis, T. L.; Amato, J. M.

2011-12-01

New studies of the Liberty Creek and Iceberg Lake blueschist bodies of south central Alaska indicate that despite structural similarities, these blueschist bodies are derived from a different protolith and were metamorphosed to blueschist facies at distinctly different times. Both blueschists are located just south of the Border Ranges Fault (BRF) within outcrop belts of the McHugh Complex, a low-grade mélange assemblage that is now known from detrital zircon studies to consist of two distinct assemblages: a Jurassic to Earliest Cretaceous assemblage and a Late Cretaceous assemblage. The BRF is a megathrust system that represents the Late Triassic-Early Jurassic initiation of southern Alaskan subduction. Large scale (1:24,000) mapping revealed similar fabric overprint histories, epitomized by a previously undescribed youngest vertical N-S trending crenulation cleavage in both blueschist bodies which implies a structural correlation despite their separation of ~100 kilometers along strike. Despite structural similarities detrital zircon studies show that the Liberty Creek and Iceberg Lake blueschists do not have a similar maximum age of deposition. Thirteen samples from the Iceberg Lake blueschist were processed, none of which produced detrital zircons. Samples from the McHugh Complex greenschists that surround the Iceberg Lake blueschist produced numerous zircons indicating a Late Jurassic (~160 Ma) maximum age of deposition. Three out of sixteen samples from the Liberty creek blueschist produced detrital zircons indicating maximum depositional ages ranging from Late Jurassic (~160.1 Ma, n=64 grains; ~152.25 Ma, n=68 grains) to Early Cretaceous (~137.1 Ma, n=95 grains). The Late Jurassic dates are consistent with maximum depositional ages determined by Amato and Pavlis (2010) for McHugh Complex rocks along Turnagain Arm near Anchorage, AK. Sisson and Onstott (1986) reported a metamorphic cooling age of 185 Ma for the Iceberg Lake blueschist, thus, although no depostitional age constraints were obtained for the Iceberg Lake body, its metamorphic cooling age is far older than the younger depositional ages of the Liberty Creek blueschists indicating these areas record two different blueschist facies metamorphic assemblages. Work in progress on cooling ages from the Liberty Creek rocks should clarify the age of this younger metamorphism. Although these assemblages record different metamorphic events, the similar overprint history may indicate that the Liberty Creek and Iceberg Lake blueschists were subjected to the same, younger deformation series, possibly Cenozoic strike-slip related deformation.

Prismatic displacement effect of progressive multifocal glasses on reaction time and accuracy in elderly people.

PubMed

Ellison, Ashton C; Campbell, A John; Robertson, M Clare; Sanderson, Gordon F

2014-01-01

Multifocal glasses (bifocals, trifocals, and progressives) increase the risk of falling in elderly people, but how they do so is unclear. To explain why glasses with progressive addition lenses increase the risk of falls and whether this can be attributed to false projection, this study aimed to 1) map the prismatic displacement of a progressive lens, and 2) test whether this displacement impaired reaction time and accuracy. The reaction times of healthy ≥75-year-olds (31 participants) were measured when grasping for a bar and touching a black line. Participants performed each test twice, wearing their progressives and new, matched single vision (distance) glasses in random order. The line and bar targets were positioned according to the maximum and minimum prismatic displacement effect through the progressive lens, mapped using a focimeter. Progressive spectacle lenses have large areas of prismatic displacement in the central visual axis and edges. Reaction time was faster for progressives compared with single vision glasses with a centrally-placed horizontal grab bar (mean difference 101 ms, P=0.011 [repeated measures analysis]) and a horizontal black line placed 300 mm below center (mean difference 80 ms, P=0.007). There was no difference in accuracy between the two types of glasses. Older people appear to adapt to the false projection of progressives in the central visual axis. This adaptation means that swapping to new glasses or a large change in prescription may lead to a fall. Frequently updating glasses may be more beneficial.

Mineral-solution equilibria—III. The system Na 2OAl 2O 3SiO 2H 2OHCl

NASA Astrophysics Data System (ADS)

Popp, Robert K.; Frantz, John D.

1980-07-01

Chemical equilibrium between sodium-aluminum silicate minerals and chloride bearing fluid has been experimentally determined in the range 500-700°C at 1 kbar, using rapid-quench hydrothermal methods and two modifications of the Ag + AgCl acid buffer technique. The temperature dependence of the thermodynamic equilibrium constant ( K) for the reaction NaAlSi 3O 8 + HCl o = NaCl o + 1/2Al 2SiO 5, + 5/2SiO 2 + 1/2H 2O Albite Andalusite Qtz. K = (a NaCl o) /(a H 2O ) 1/2/(a HCl o) can be described by the following equation: log k = -4.437 + 5205.6/ T( K) The data from this study are consistent with experimental results reported by MONTOYA and HEMLEY (1975) for lower temperature equilibria defined by the assemblages albite + paragonite + quartz + fluid and paragonite + andalusite + quartz + fluid. Values of the equilibrium constants for the above reactions were used to estimate the difference in Gibbs free energy of formation between NaCl o and HCl o in the range 400-700°C and 1-2 kbar. Similar calculations using data from phase equilibrium studies reported in the literature were made to determine the difference in Gibbs free energy of formation between KCl o and HCl o. These data permit modelling of the chemical interaction between muscovite + kspar + paragonite + albite + quartz assemblages and chloride-bearing hydrothermal fluids.

Changes in salt-marsh carabid assemblages after an invasion by the native grass Elymus athericus (Link) Kerguélen

PubMed Central

Georges, Anita; Fouillet, Philippe; Pétillon, Julien

2011-01-01

Abstract As a result of an invasion by the native grass Elymus athericus (Link) Kerguélen (Poaceae) in the last 10 years, a major change in vegetation cover has occurred in salt marshes of the Mont Saint-Michel bay, Western France. The impact of such an invasion on carabid assemblages, a dominant group of terrestrial arthropods in these habitats and containing several stenotopic species, is investigated here. In our study site, carabid data are available from 1983 and 1984, allowing a comparison of species distribution ranges in salt marshes before (1983–1984) and after (2002) the Elymus athericus invasion. A total of 16,867 adults belonging to 40 species were caught. By considering the presence-absence of species shared between studies, we show that the invasion by Elymus athericus promoted the progression of non-coastal species (mainly Pterostichus s.l. spp.). This did however not interfere with resident species distributions, finally resulting in higher carabid species richness in the entire area. The species composition and abundances of carabid assemblages were also compared between natural and invaded stations in 2002. The main result is that abundances of some halophilic species decreased in one invaded plot (in case of Pogonus chalceus (Marsham 1802)) whereas the opposite pattern was observed for other species (e.g., Bembidion minimum (Fabricius 1792)). Invaded habitats were characterized by lower percentages of halophilic species and higher total species richness. PMID:21738424

Boreal Tintinnid Assemblage in the Northwest Pacific and Its Connection with the Japan Sea in Summer 2014.

PubMed

Li, Haibo; Xu, Zhiqiang; Zhang, Wuchang; Wang, Shaoqing; Zhang, Guangtao; Xiao, Tian

2016-01-01

Tintinnids are planktonic ciliates that play an important role in marine ecosystem. According to their distribution in the world oceans, tintinnid genera were divided into several biogeographical types such as boreal, warm water, austral and neritic. Therefore, the oceanic tintinnid assemblage could be correspondingly divided into boreal assemblage, warm water assemblage and austral assemblage. The purpose of this study was to investigate the characteristics of boreal tintinnid assemblage in the Northwest Pacific and the Arctic, and to identify the connection between boreal tintinnid assemblage and neighboring assemblages. Surface water samples were collected along a transect from the East China Sea to the Chukchi Sea in summer 2014. According to the presence of boreal genera and warm water genera, three tintinnid assemblages (the East China Sea neritic assemblage, the Japan Sea warm water assemblage, and the boreal assemblage) were identified along the transect. The boreal assemblage extended from the Chukchi Sea to the waters north of the Sōya Strait. Densities peaks occurred at stations in the two branches of the Alaska Current and decreased both northward and southward. The densities were <10 ind./dm3 at most stations in Arctic region. The dominant genera (Acanthostomella, Codonellopsis, Parafavella, and Ptychocylis) accounted for 79.07±29.67% (n = 49) of the abundance in the boreal assemblage. The densities of the dominant genera covaried with strongly significant positive correlations. Tintinnids with lorica oral diameter of 22-26 μm and 38-42 μm were dominant and contributed 67.35% and 15.13%, respectively, to the total abundance in the boreal assemblage. The distribution and densities of tintinnids in the study area suggest that the Sōya Strait might be a geographical barrier for tintinnids expansion.

Littoral zone fish assemblages of northern Cayuga Lake.

USGS Publications Warehouse

McKenna, James E.

2001-01-01

Fish assemblages from northern Cayuga Lake were examined for patterns in temporal structure. Fish assemblages changed significantly between seasons. Bluegill (Lepomis macrochirus), bluntnose minnow (Pimephales notatus), and smallmouth bass (Micropterus dolomieu) formed the basis for most assemblages, but the spring assemblage was dominated by common carp (Cyprinus carpio). Correlations between community structure and abiotic factors were identified. Ten abiotic factors strongly influenced species assemblages, including phosphorus concentration, but could not fully explain differences between assemblages. Results indicate that the seasonal pattern of fish assemblage structure and abundance of fish that tend to feed in the water column were related to the annual cycle of productivity in the lake and behavioral adaptations of the fish.

Response of the diatom flora in the Gdańsk Basin (southern Baltic Sea) to eutrophication in the last century

NASA Astrophysics Data System (ADS)

Witak, Małgorzata

2016-04-01

The diatom flora in six short cores (length of 10-20 cm) taken from Gdańsk Basin, southern Baltic Sea, was analyzed in order to response of diatoms to environmental changes over the past 100 years. This study is a part of CLISED project (Climate Change Impact on Ecosystem Health - Marine Sediments Indicators) funded from Norway Grants in the Polish-Norwegian Research Programme. Three cores P116, M1 and P1 were retrieved from the Gdańsk Deep region, whereas P104, BMPK10 and P110 were drilled from the shallower part - Gulf of Gdańsk. The sediment cores were dated by 210Pb and represented time interval of AD 1895-2015. In this period an artificial mouth of the Vistula River near Świbno was excavated and riverine waters flowed directly to the Gulf of Gdańsk. Urbanization, progressive industrialization and an increase in the inflow of waste water had a strong influence on ecosystem in the last 120 years. The transport of large amounts of nutrients, organic matter and pollutants by the rivers resulted in environmental degradation of the Gdańsk Basin and its progressive eutrophication in particular. Diatoms, being the major component of algal assemblages, are excellent bioindicators for assessing the state of basin ecosystems. They are usually abundant in marine sediments, diverse and sensitive to numerous environmental variables, including physical (e.g. light, temperature, water transparency) and chemical (e.g. pH, alkalinity, nutrient availability) factors. Changes in nutrients concentrations may lead to substantial transformations in the structure of diatom assemblages. Samples for diatom analyses (ca. 0.3-2.0 g dry sediment) were prepared following the standard procedure for diatom observation under light microscope (Battarbee, 1986). To estimate the concentration of siliceous microfossils per unit weight of dry sediment (absolute abundance), a random settling technique was used (Bodén, 1991). Permanent diatom preparations were mounted in Naphrax® (refractive index nD=1.73). The analysis was performed with a NIKON microscope under a 100× oil immersion objective. The raw counts were transformed to relative abundance of the total frustules counted. The diatoms were divided into groups according to their biotype, salinity, trophy and saproby requirements. The content (in percentage) of all ecological groups were counted in the core. A total of 145 diatom species including varieties and forms representing 53 genera were identified in all samples. The diatom community was strong dominance by small-size planktic euhalobous (Thalassiosira levanderi, Pauliella taeniata) and mesohalobous (Cyclotella choctawhatcheeana) species. They were accompanied by freshwater eutraphentic and pollution-tolerant forms Actinocyclus normanii, Cyclostephanos dubius, Cyclotella atomus, C. caspia, C. meneghiniana, Stephanodiscus hantzschii, S. medius, S. neoastraea and S. parvus. The assemblage structure is a visible evidence of the progressive anthropopressure recorded in the near-bottom sediments of the Gdańsk Basin. Moreover, changes in spatial distribution of diatom anthropogenic assemblage show the close relationship to the distance from mouth of the Vistula River.

Holocene oceanographic and climatic variability of the Vega Drift deduced through foraminiferal interpretation

USGS Publications Warehouse

Szymcek, Phillip; Ishman, Scott E.; Domack, Eugene W.; Leventer, Amy

2007-01-01

fusiformis assemblages. Most agglutinated forms tend to decrease downcore, and comparisons to modern analogues imply post-depositional disintegration, while calcareous taxa indicate non-corrosive bottom waters. The lower to middle Holocene Vega Drift sediments are characterized by the calcareous S. fusiformis assemblage and glacial plume sediments. This assemblage is characterized by calcareous forms including Globocassidulina biora, G. subglobosa, and Nonionella iridea. The planktic species Neogloboquadrina pachyderma is associated with the S. fusiformis assemblage. The S. fusiformis assemblage is faunally similar to assemblages described in fjords of the western Antarctic Peninsula and indicates non-corrosive bottom water. Sediments of the mid to upper Holocene interval are characterized by the T. wiesneri and M. arenacea assemblages and indicate the presence of Hyper Saline Shelf Water. These assemblages are similar to modern assemblages directly to the south in the Prince Gustav Channel. The upper Holocene is marked by several small intervals with taxonomic characteristics similar to the S. fusiformis assemblage, indicating periodic introduction of non-corrosive bottom water to the Vega Drift

Response of fish assemblages to declining acidic deposition in Adirondack Mountain lakes, 1984–2012

USGS Publications Warehouse

Baldigo, Barry P.; Roy, Karen; Driscoll, Charles T.

2016-01-01

Adverse effects of acidic deposition on the chemistry and fish communities were evident in Adirondack Mountain lakes during the 1980s and 1990s. Fish assemblages and water chemistry in 43 Adirondack Long-Term Monitoring (ALTM) lakes were sampled by the Adirondack Lakes Survey Corporation and the New York State Department of Environmental Conservation during three periods (1984–87, 1994–2005, and 2008–12) to document regional impacts and potential biological recovery associated with the 1990 amendments to the 1963 Clean Air Act (CAA). We assessed standardized data from 43 lakes sampled during the three periods to quantify the response of fish-community richness, total fish abundance, and brook trout (Salvelinus fontinalis) abundance to declining acidity that resulted from changes in U.S. air-quality management between 1984 and 2012. During the 28-year period, mean acid neutralizing capacity (ANC) increased significantly from 3 to 30 μeq/L and mean inorganic monomeric Al concentrations decreased significantly from 2.22 to 0.66 μmol/L, yet mean species richness, all species or total catch per net night (CPNN), and brook trout CPNN did not change significantly in the 43 lakes. Regression analyses indicate that fishery metrics were not directly related to the degree of chemical recovery and that brook trout CPNN may actually have declined with increasing ANC. While the richness of fish communities increased with increasing ANC as anticipated in several Adirondack lakes, observed improvements in water quality associated with the CAA have generally failed to produce detectable shifts in fish assemblages within a large number of ALTM lakes. Additional time may simply be needed for biological recovery to progress, or else more proactive efforts may be necessary to restore natural fish assemblages in Adirondack lakes in which water chemistry is steadily recovering from acidification.

Simulated space weathering of Fe- and Mg-rich aqueously altered minerals using pulsed laser irradiation

NASA Astrophysics Data System (ADS)

Kaluna, H. M.; Ishii, H. A.; Bradley, J. P.; Gillis-Davis, J. J.; Lucey, P. G.

2017-08-01

Simulated space weathering experiments on volatile-rich carbonaceous chondrites (CCs) have resulted in contrasting spectral behaviors (e.g. reddening vs bluing). The aim of this work is to investigate the origin of these contrasting trends by simulating space weathering on a subset of minerals found in these meteorites. We use pulsed laser irradiation to simulate micrometeorite impacts on aqueously altered minerals and observe their spectral and physical evolution as a function of irradiation time. Irradiation of the mineral lizardite, a Mg-phyllosilicate, produces a small degree of reddening and darkening, but a pronounced reduction in band depths with increasing irradiation. In comparison, irradiation of an Fe-rich aqueously altered mineral assemblage composed of cronstedtite, pyrite and siderite, produces significant darkening and band depth suppression. The spectral slopes of the Fe-rich assemblage initially redden then become bluer with increasing irradiation time. Post-irradiation analyses of the Fe-rich assemblage using scanning and transmission electron microscopy reveal the presence of micron sized carbon-rich particles that contain notable fractions of nitrogen and oxygen. Radiative transfer modeling of the Fe-rich assemblage suggests that nanometer sized metallic iron (npFe0) particles result in the initial spectral reddening of the samples, but the increasing production of micron sized carbon particles (μpC) results in the subsequent spectral bluing. The presence of npFe0 and the possible catalytic nature of cronstedtite, an Fe-rich phyllosilicate, likely promotes the synthesis of these carbon-rich, organic-like compounds. These experiments indicate that space weathering processes may enable organic synthesis reactions on the surfaces of volatile-rich asteroids. Furthermore, Mg-rich and Fe-rich aqueously altered minerals are dominant at different phases of the aqueous alteration process. Thus, the contrasting spectral slope evolution between the Fe- and Mg-rich samples in these experiments may indicate that space weathering trends of volatile-rich asteroids have a compositional dependency that could be used to determine the aqueous histories of asteroid parent bodies.

Permeability of gypsum samples dehydrated in air

NASA Astrophysics Data System (ADS)

Milsch, Harald; Priegnitz, Mike; Blöcher, Guido

2011-09-01

We report on changes in rock permeability induced by devolatilization reactions using gypsum as a reference analog material. Cylindrical samples of natural alabaster were dehydrated in air (dry) for up to 800 h at ambient pressure and temperatures between 378 and 423 K. Subsequently, the reaction kinetics, so induced changes in porosity, and the concurrent evolution of sample permeability were constrained. Weighing the heated samples in predefined time intervals yielded the reaction progress where the stoichiometric mass balance indicated an ultimate and complete dehydration to anhydrite regardless of temperature. Porosity showed to continuously increase with reaction progress from approximately 2% to 30%, whilst the initial bulk volume remained unchanged. Within these limits permeability significantly increased with porosity by almost three orders of magnitude from approximately 7 × 10-19 m2 to 3 × 10-16 m2. We show that - when mechanical and hydraulic feedbacks can be excluded - permeability, reaction progress, and porosity are related unequivocally.

Prismatic displacement effect of progressive multifocal glasses on reaction time and accuracy in elderly people

PubMed Central

Ellison, Ashton C; Campbell, A John; Robertson, M Clare; Sanderson, Gordon F

2014-01-01

Background Multifocal glasses (bifocals, trifocals, and progressives) increase the risk of falling in elderly people, but how they do so is unclear. To explain why glasses with progressive addition lenses increase the risk of falls and whether this can be attributed to false projection, this study aimed to 1) map the prismatic displacement of a progressive lens, and 2) test whether this displacement impaired reaction time and accuracy. Methods The reaction times of healthy ≥75-year-olds (31 participants) were measured when grasping for a bar and touching a black line. Participants performed each test twice, wearing their progressives and new, matched single vision (distance) glasses in random order. The line and bar targets were positioned according to the maximum and minimum prismatic displacement effect through the progressive lens, mapped using a focimeter. Results Progressive spectacle lenses have large areas of prismatic displacement in the central visual axis and edges. Reaction time was faster for progressives compared with single vision glasses with a centrally-placed horizontal grab bar (mean difference 101 ms, P=0.011 [repeated measures analysis]) and a horizontal black line placed 300 mm below center (mean difference 80 ms, P=0.007). There was no difference in accuracy between the two types of glasses. Conclusion Older people appear to adapt to the false projection of progressives in the central visual axis. This adaptation means that swapping to new glasses or a large change in prescription may lead to a fall. Frequently updating glasses may be more beneficial. PMID:24872674

Synthetic H sub 2 O-CO sub 2 fluid inclusions in spontaneously nucleated forsterite, enstatite, and diopside hosts: The method and applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, E.L.; Jenkins, D.M.

1991-04-01

This paper describes an experimental technique for the production of primary synthetic H{sub 2}O-CO{sub 2} and H{sub 2}O-CO{sub 2}-NaCl fluid inclusions in forsterite, orthopyroxene, and clinopyroxene hosts spontaneously nucleated during the incongruent dissolution of tremolite. The host producing reactions involve the complexation and transport of Ca, Mg, and SiO{sub 2} to the growing product phases in which the inclusions are hosted. This technique, therefore, provides the opportunity to study the effects of a complex host-producing reaction on the composition of the fluids trapped as primary inclusions in the growing host phase. In addition to providing a model for the entrapmentmore » of primary fluid inclusions, the reactions provide an excellent model of the onset of granulite facies metamorphism where, in nature, fluid inclusion compositions are commonly in disequilibrium with the mineral assemblages in which they are hosted.« less

Multi-regional synthesis of temporal trends in biotic assemblages in streams and rivers of the continental United States

USGS Publications Warehouse

Miller, Matthew P.; Brasher, Anne M.D.; Keenen, Jonathan G.

2013-01-01

Biotic assemblages in aquatic ecosystems are excellent integrators and indicators of changing environmental conditions within a watershed. Therefore, temporal changes in abiotic environmental variables often can be inferred from temporal changes in biotic assemblages. Algae, macroinvertebrate, and fish assemblage data were collected from 91 sampling sites in 4 geographic regions (northeastern/north-central, southeastern, south-central, and western), collectively encompassing the continental United States, from 1993 to 2009 as part of the U.S. Geological Survey National Water-Quality Assessment Program. This report uses a multivariate approach to synthesize temporal trends in biotic assemblages and correlations with relevant abiotic parameters as a function of biotic assemblage, geographic region, and land use. Of the three groups of biota, algal assemblages had temporal trends at the greatest percentage of sites. Of the regions, a greater percentage of sites in the northeastern/north-central and western regions had temporal trends in biotic assemblages. In terms of land use, a greater percentage of watersheds draining agricultural, urban, and undeveloped areas had significant temporal changes in biota, as compared to watersheds with mixed use. Correlations between biotic assemblages and abiotic variables indicate that, in general, macroinvertebrate assemblages correlated with water quality and fish assemblages correlated with physical habitat. Taken together, results indicate that there are regional differences in how individual biotic assemblages (algae, macroinvertebrates, and fish) respond to different abiotic drivers of change.

The influence of minerals on decomposition of the n-alkyl-α-amino acid norvaline under hydrothermal conditions

NASA Astrophysics Data System (ADS)

McCollom, Thomas M.

2013-03-01

Laboratory experiments were conducted to observe the effect of iron oxide and sulfide minerals on decomposition reactions of norvaline, a representative of a group of alkyl-α-amino acids observed in meteorites and prebiotic synthesis experiments. The primary products observed during heating of aqueous solutions of norvaline at temperatures of 156-186 °C in the presence of minerals included CO2, NH3, butyric acid, and valeric acid. The products indicated that norvaline predominantly decomposed by a combination of pathways that included both decarboxylation followed rapidly by oxidative deamination (norvaline → butanamide + CO2 → butyric acid + NH3) and deamination directly to valeric acid (norvaline → valeric acid + NH3). An experiment performed with alanine under similar conditions showed it decomposed by analogous reactions that produced acetic and propionic acids along with CO2 and NH3. For both amino acids, the presence of minerals accelerated decomposition rates as well as altered the final products of reaction, when compared with decomposition in the absence of mineral substrates. In addition, decomposition of norvaline was found to proceed much faster in the presence of the mineral assemblage hematite-magnetite-pyrite (HMP) than with the assemblage pyrite-pyrrhotite-magnetite (PPM), a trend that has been observed for several other organic compounds. The influence of minerals on decomposition reactions of these amino acids appears to be attributable to a combination of surface catalysis and production of dissolved sulfur compounds. Overall, the results indicate that minerals may exert a substantial influence on amino acid stability in many geologic environments, and emphasize the need to consider the impact of minerals when evaluating the lifetimes and decomposition rates of amino acids in terrestrial and planetary systems. Estimated half-lives for alkyl-α-amino acids based on the experimental results indicate that moderately hot hydrothermal environments (<˜100 °C) would have been the most favorable for accumulation of these amino acids in the early solar system, and that the predominance of alkyl-α-amino acids in some meteorites may only be compatible with temperature remaining below about 60 °C following their formation.

DETECTION AND COMPARISON OF GIARDIAVIRUS (GLV) FROM DIFFERENT ASSEMBLAGES OF GIARDIA DUODENALIS

USDA-ARS?s Scientific Manuscript database

Five assemblages of Giardia were identified from cysts in cattle, dog, cat, sheep, and reindeer feces using ribosomal DNA (rDNA) sequencing. Assemblage A was present in cattle and reindeer feces, Assemblages C and D were present in dog feces, Assemblage E was present in cattle and sheep feces, and ...

Black liquor and the hangover effect: fish assemblage recovery dynamics following a pulse disturbance

PubMed Central

Piller, Kyle R; Geheber, Aaron D

2015-01-01

Anthropogenic perturbations impact aquatic systems causing wide-ranging responses, from assemblage restructuring to assemblage recovery. Previous studies indicate the duration and intensity of disturbances play a role in the dynamics of assemblage recovery. In August 2011, the Pearl River, United States, was subjected to a weak black liquor spill from a paper mill which resulted in substantial loss of fish in a large stretch of the main channel. We quantified resilience and recovery of fish assemblage structure in the impacted area following the event. We compared downstream (impacted) assemblages to upstream (unimpacted) assemblages to determine initial impacts on structure. Additionally, we incorporated historic fish collections (1988–2011) to examine impacts on assemblage structure across broad temporal scales. Based on NMDS, upstream and downstream sites generally showed similar assemblage structure across sample periods with the exception of the 2 months postdischarge, where upstream and downstream sites visually differed. Multivariate analysis of variance (PERMANOVA) indicated significant seasonal variation among samples, but found no significant interaction between impacted and unimpacted assemblages following the discharge event. However, multivariate dispersion (MVDISP) showed greater variance among assemblage structure following the discharge event. These results suggest that 2 months following the disturbance represent a time period of stochasticity in regard to assemblage structure dynamics, and this was followed by rapid recovery. We term this dynamic the “hangover effect” as it represents the time frame from the cessation of the perturbation to the assemblage's return to predisturbance conditions. The availability and proximity of tributaries and upstream refugia, which were not affected by the disturbance, as well as the rapid recovery of abiotic parameters likely played a substantial role in assemblage recovery. This study not only demonstrates rapid recovery in an aquatic system, but further demonstrates the value of continuous, long-term, data collections which enhance our understanding of assemblage dynamics. PMID:26120432

The effects of an invasive seaweed on native communities vary along a gradient of land-based human impacts

PubMed Central

Badalamenti, Fabio; Iveša, Ljiljana; Mikac, Barbara; Musco, Luigi; Jaklin, Andrej; Rattray, Alex; Vega Fernández, Tomás; Benedetti-Cecchi, Lisandro

2016-01-01

The difficulty in teasing apart the effects of biological invasions from those of other anthropogenic perturbations has hampered our understanding of the mechanisms underpinning the global biodiversity crisis. The recent elaboration of global-scale maps of cumulative human impacts provides a unique opportunity to assess how the impact of invaders varies among areas exposed to different anthropogenic activities. A recent meta-analysis has shown that the effects of invasive seaweeds on native biota tend to be more negative in relatively pristine than in human-impacted environments. Here, we tested this hypothesis through the experimental removal of the invasive green seaweed, Caulerpa cylindracea, from rocky reefs across the Mediterranean Sea. More specifically, we assessed which out of land-based and sea-based cumulative impact scores was a better predictor of the direction and magnitude of the effects of this seaweed on extant and recovering native assemblages. Approximately 15 months after the start of the experiment, the removal of C. cylindracea from extant assemblages enhanced the cover of canopy-forming macroalgae at relatively pristine sites. This did not, however, result in major changes in total cover or species richness of native assemblages. Preventing C. cylindracea re-invasion of cleared plots at pristine sites promoted the recovery of canopy-forming and encrusting macroalgae and hampered that of algal turfs, ultimately resulting in increased species richness. These effects weakened progressively with increasing levels of land-based human impacts and, indeed, shifted in sign at the upper end of the gradient investigated. Thus, at sites exposed to intense disturbance from land-based human activities, the removal of C. cylindracea fostered the cover of algal turfs and decreased that of encrusting algae, with no net effect on species richness. Our results suggests that competition from C. cylindracea is an important determinant of benthic assemblage diversity in pristine environments, but less so in species-poor assemblages found at sites exposed to intense disturbance from land-based human activities, where either adverse physical factors or lack of propagules may constrain the number of potential native colonizers. Implementing measures to reduce the establishment and spread of C. cylindracea in areas little impacted by land-based human activities should be considered a priority for preserving the biodiversity of Mediterranean shallow rocky reefs. PMID:27014513

The effects of an invasive seaweed on native communities vary along a gradient of land-based human impacts.

PubMed

Bulleri, Fabio; Badalamenti, Fabio; Iveša, Ljiljana; Mikac, Barbara; Musco, Luigi; Jaklin, Andrej; Rattray, Alex; Vega Fernández, Tomás; Benedetti-Cecchi, Lisandro

2016-01-01

The difficulty in teasing apart the effects of biological invasions from those of other anthropogenic perturbations has hampered our understanding of the mechanisms underpinning the global biodiversity crisis. The recent elaboration of global-scale maps of cumulative human impacts provides a unique opportunity to assess how the impact of invaders varies among areas exposed to different anthropogenic activities. A recent meta-analysis has shown that the effects of invasive seaweeds on native biota tend to be more negative in relatively pristine than in human-impacted environments. Here, we tested this hypothesis through the experimental removal of the invasive green seaweed, Caulerpa cylindracea, from rocky reefs across the Mediterranean Sea. More specifically, we assessed which out of land-based and sea-based cumulative impact scores was a better predictor of the direction and magnitude of the effects of this seaweed on extant and recovering native assemblages. Approximately 15 months after the start of the experiment, the removal of C. cylindracea from extant assemblages enhanced the cover of canopy-forming macroalgae at relatively pristine sites. This did not, however, result in major changes in total cover or species richness of native assemblages. Preventing C. cylindracea re-invasion of cleared plots at pristine sites promoted the recovery of canopy-forming and encrusting macroalgae and hampered that of algal turfs, ultimately resulting in increased species richness. These effects weakened progressively with increasing levels of land-based human impacts and, indeed, shifted in sign at the upper end of the gradient investigated. Thus, at sites exposed to intense disturbance from land-based human activities, the removal of C. cylindracea fostered the cover of algal turfs and decreased that of encrusting algae, with no net effect on species richness. Our results suggests that competition from C. cylindracea is an important determinant of benthic assemblage diversity in pristine environments, but less so in species-poor assemblages found at sites exposed to intense disturbance from land-based human activities, where either adverse physical factors or lack of propagules may constrain the number of potential native colonizers. Implementing measures to reduce the establishment and spread of C. cylindracea in areas little impacted by land-based human activities should be considered a priority for preserving the biodiversity of Mediterranean shallow rocky reefs.

The evolution of young silicic lavas at Medicine Lake Volcano, California: Implications for the origin of compositional gaps in calc-alkaline series lavas

USGS Publications Warehouse

Grove, T.L.; Donnelly-Nolan, J. M.

1986-01-01

At Medicine Lake Volcano, California, the compositional gap between andesite (57-62 wt.% SiO2) and rhyolite (73-74 wt.% SiO2) has been generated by fractional crystallization. Assimilation of silicic crust has also occurred along with fractionation. Two varieties of inclusions found in Holocene rhyolite flows, hornblende gabbros and aphyric andesites, provide information on the crystallization path followed by lavas parental to the rhyolite. The hornblende gabbros are magmatic cumulate residues and their mineral assemblages are preserved evidence of the phases that crystallized from an andesitic precursor lava to generate the rhyolite lavas. The andesitic inclusions represent samples of a parental andesite and record the early part of the differentiation history. Olivine, plagioclase and augite crystallization begins the differentiation history, followed by the disappearance of olivine and augite through reaction with the liquid to form orthopyroxene and amphibole. Further crystallization of the assemblage plagioclase, amphibole, orthopyroxene, magnetite, and apatite from a high-SiO2 andesite leads to rhyolite. This final crystallization process occurs on a cotectic that is nearly horizontal in temperature-composition space. Since a large amount of crystallization occurs over a limited temperature interval, a compositional gap develops between rhyolite and high SiO2 andesite. Liquidus surfaces with shallow slopes in temperature-composition space are characteristic of several late-stage crystallization assemblages in the andesite to rhyolite compositional range. Experimentally produced plagioclase+ amphibole+orthopyroxene+magnetite and plagioclase+ augite+low-Ca pyroxene+magnetite cotectics have liquidus slopes that are nearly flat. At other calc-alkaline volcanic centers crystallization processes involving large compositional changes over small temperature intervals may also be important in the development of bimodal volcanism (i.e. the existence of a composition gap). At Mt. Mazama and Mt. St. Helens, USA and Aso Caldera and Shikotsu, Japan the amphibole-bearing assemblage was important. At Krakatau, Indonesia and Katmai, USA, an augite+orthopyroxene-bearing assemblage was important. In addition to its role in the production of a compositional gap between intermediate and rhyolitic lavas, the crystallization process increases the H2O content of the residual liquid. This rapid increase in residual liquid volatile content which results from the precipitation of a large proportion of crystalline solids may be an important factor among several that lead to explosive silicic eruptions. ?? 1986 Springer-Verlag.

Cumulative Significance of Hyporheic Exchange and Biogeochemical Processing in River Networks

NASA Astrophysics Data System (ADS)

Harvey, J. W.; Gomez-Velez, J. D.

2014-12-01

Biogeochemical reactions in rivers that decrease excessive loads of nutrients, metals, organic compounds, etc. are enhanced by hydrologic interactions with microbially and geochemically active sediments of the hyporheic zone. The significance of reactions in individual hyporheic flow paths has been shown to be controlled by the contact time between river water and sediment and the intrinsic reaction rate in the sediment. However, little is known about how the cumulative effects of hyporheic processing in large river basins. We used the river network model NEXSS (Gomez-Velez and Harvey, submitted) to simulate hyporheic exchange through synthetic river networks based on the best available models of network topology, hydraulic geometry and scaling of geomorphic features, grain size, hydraulic conductivity, and intrinsic reaction rates of nutrients and metals in river sediment. The dimensionless reaction significance factor, RSF (Harvey et al., 2013) was used to quantify the cumulative removal fraction of a reactive solute by hyporheic processing. SF scales reaction progress in a single pass through the hyporheic zone with the proportion of stream discharge passing through the hyporheic zone for a specified distance. Reaction progress is optimal where the intrinsic reaction timescale in sediment matches the residence time of hyporheic flow and is less efficient in longer residence time hyporheic flow as a result of the decreasing proportion of river flow that is processed by longer residence time hyporheic flow paths. In contrast, higher fluxes through short residence time hyporheic flow paths may be inefficient because of the repeated surface-subsurface exchanges required to complete the reaction. Using NEXSS we found that reaction efficiency may be high in both small streams and large rivers, although for different reasons. In small streams reaction progress generally is dominated by faster pathways of vertical exchange beneath submerged bedforms. Slower exchange beneath meandering river banks mainly has importance only in large rivers. For solutes entering networks in proportion to water inputs it is the lower order streams that tend to dominate cumulative reaction progress.

[Characteristics of ichthyoplankton assemblages in Yangtze Estuary and adjacent waters in spring].

PubMed

Liu, Shu-De; Xian, Wei-Wei; Liu, Dong

2008-10-01

Based on the investigation data of ichthyoplankton assemblages and environmental factors in Yangtze Estuary and adjacent waters in May 1999 and 2001, the characteristics of ichthyoplankton assemblages in these areas in spring were studied by using TWINSPAN (two-way indicator species analysis) and CCA (canonical correspondence analysis). A total of 11 540 ichthyoplankton individuals were taxonomically identified, belonging to 11 orders, 18 families and 32 species, of which, Coilia mystus, Engraulis japonicus, Chaeturichthys hexanema, Allanetta bleekeri, and Trachidermis fasciatus were the dominant species. The ichthyoplankton communities were classified into three assemblages by using TWINSPAN, i.e., estuarine assemblage dominated by C. mystus, coastal assemblage dominated by A. bleekeri and T. fasciatus; and shelf assemblage featured by E. japonicus and C. hexanema. The CCA ordination of the interrelations among the three assemblages and their correlations to the environmental variables revealed that salinity, depth, dissolved oxygen, and total suspended particulate matter were the major factors affecting the ichthyoplankton assemblages in the study areas.

Spatial and seasonal patterns of ichthyoplankton assemblages in the Haizhou Bay and its adjacent waters of China

NASA Astrophysics Data System (ADS)

Li, Zengguang; Ye, Zhenjiang; Wan, Rong

2015-12-01

Surveys were conducted in five voyages in Haizhou Bay and its adjacent coastal area from March to December 2011 during full moon spring tides. The ichthyoplankton assemblages and the environmental factors that affect their spatial and seasonal patterns were determined. Totally 35 and 12 fish egg and larvae taxa were identified, respectively. Over the past several decades, the egg and larval species composition has significantly changed in Haizhou Bay and its adjacent waters, most likely corresponding with the alteration of fishery resources, which are strongly affected by anthropogenic activities and climate change. The Bray-Curtis dissimilarity index identified four assemblages: near-shore bay assemblage, middle bay assemblage and two closely related assemblages (near-shore/middle bay assemblage and middle/edge of bay assemblage). The primary species of each assemblage principally reflected the spawning strategies of adult fish. The near-shore bay assemblage generally occurred in near-shore bay, with depths measuring <20 m, and the middle bay assemblage generally occurred in the middle of bay, with depths measuring 20 to 40 m. Spatial and seasonal variations in ichthyoplankton in each assemblage were determined by interactions between biological behavioral traits and oceanographic features, particularly the variation of local conditions within the constraint of a general reproductive strategy. The results of Spearman's rank correlation analysis indicated that both fish egg and larval abundance were positively correlated with depth, which is critical to the oceanographic features in Haizhou Bay.

Reconstructing Grazer Assemblages for Protected Area Restoration

PubMed Central

Venter, Jan A.; Prins, Herbert H. T.; Balfour, David A.; Slotow, Rob

2014-01-01

Protected area management agencies often struggle to reliably reconstruct grazer assemblages due to a lack of historical distribution data for their regions. Wrong predictions of grazing assemblages could potentially affect biodiversity negatively. The objective of the study was to determine how well grazing herbivores have become established since introduction to the Mkambati Nature Reserve, South Africa, how this was influenced by facilitation and competition, and how indigenous grazer assemblages can best be predicted for effective ecological restoration. Population trends of several grazing species were investigated in in order to determine how well they have become established since introduction. Five different conceivable grazing assemblages reflecting a range of approaches that are commonly encountered during conservation planning and management decision making were assessed. Species packing was used to predict whether facilitation, competition or co-existence were more likely to occur, and the species packing of the different assemblages were assessed using ANCOVA. Reconstructing a species assemblage using biogeographic and biological information provides the opportunity for a grazer assemblage that allows for facilitatory effects, which in turn leads to an ecosystem that is able to maintain its grazer assemblage structure. The strength of this approach lies in the ability to overcome the problem of depauperate grazer assemblages, resulting from a lack of historical data, by using biogeographical and biological processes, to assist in more effectively reconstructing grazer assemblages. Adaptive management of grazer assemblage restoration through reintroduction, using this approach would further mitigate management risks. PMID:24603663

Kinetic Profiling of Catalytic Organic Reactions as a Mechanistic Tool.

PubMed

Blackmond, Donna G

2015-09-02

The use of modern kinetic tools to obtain virtually continuous reaction progress data over the course of a catalytic reaction opens up a vista that provides mechanistic insights into both simple and complex catalytic networks. Reaction profiles offer a rate/concentration scan that tells the story of a batch reaction time course in a qualitative "fingerprinting" manner as well as in quantitative detail. Reaction progress experiments may be mathematically designed to elucidate catalytic rate laws from only a fraction of the number of experiments required in classical kinetic measurements. The information gained from kinetic profiles provides clues to direct further mechanistic analysis by other approaches. Examples from a variety of catalytic reactions spanning two decades of the author's work help to delineate nuances on a central mechanistic theme.

Autumn ichthyoplankton assemblage in the Yangtze Estuary shaped by environmental factors.

PubMed

Zhang, Hui; Xian, Weiwei; Liu, Shude

2016-01-01

This study investigated the response of the ichthyoplankton community to environmental changes in the Yangtze Estuary using canonical correspondence analysis. Ichthyoplankton community and environmental data were recorded during the autumns of 1998, 2000, 2002, 2003, 2004, 2007 and 2009. Among the ichthyoplankton, the dominant larval and juvenile families were the Engraulidae, Gobiidae and Salangidae, and the most common eggs were from Trichiurus lepturus. The ichthyoplankton was identified via canonical correspondence analysis to three assemblages: an estuary assemblage dominated by Chaeturichthys stigmatias, a coastal assemblage dominated by Engraulis japonicus and Stolephorus commersonii, and an offshore assemblage dominated by Trichiurus lepturus. Regarding environmental factors in the Yangtze Estuary, suspended matter and surface seawater salinity were the main factors influencing the distributions of the different assemblages, while sediment from the Yangtze River during the rainy season and chlorophyll a were the principle drivers of the annual variances in the distribution of ichthyoplankton assemblages. Our aims in this study were to provide detailed characterizations of the ichthyoplankton assemblage in the autumns of seven years, examine the long-term dynamics of autumn ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary.

Autumn ichthyoplankton assemblage in the Yangtze Estuary shaped by environmental factors

PubMed Central

Liu, Shude

2016-01-01

This study investigated the response of the ichthyoplankton community to environmental changes in the Yangtze Estuary using canonical correspondence analysis. Ichthyoplankton community and environmental data were recorded during the autumns of 1998, 2000, 2002, 2003, 2004, 2007 and 2009. Among the ichthyoplankton, the dominant larval and juvenile families were the Engraulidae, Gobiidae and Salangidae, and the most common eggs were from Trichiurus lepturus. The ichthyoplankton was identified via canonical correspondence analysis to three assemblages: an estuary assemblage dominated by Chaeturichthys stigmatias, a coastal assemblage dominated by Engraulis japonicus and Stolephorus commersonii, and an offshore assemblage dominated by Trichiurus lepturus. Regarding environmental factors in the Yangtze Estuary, suspended matter and surface seawater salinity were the main factors influencing the distributions of the different assemblages, while sediment from the Yangtze River during the rainy season and chlorophyll a were the principle drivers of the annual variances in the distribution of ichthyoplankton assemblages. Our aims in this study were to provide detailed characterizations of the ichthyoplankton assemblage in the autumns of seven years, examine the long-term dynamics of autumn ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. PMID:27114877

Modeling the hydrothermal circulation and the hydrogen production at the Rainbow site with Cast3M

NASA Astrophysics Data System (ADS)

Perez, F.; Mügler, C.; Charlou, J.; Jean-baptiste, P.

2012-12-01

On the Mid-Atlantic Ridge, the Rainbow venting site is described as an ultramafic-hosted active hydrothermal site and releases high fluxes of methane and hydrogen [1, 2]. This behavior has first been interpreted as the result of serpentinization processes. But geochemical reactions involving olivine and plagioclase assemblages, and leading to chlorite, tremolite, talc and magnetite assemblages, could contribute to the observed characteristics of the exiting fluid [2]. The predominance of one of these geochemical reactions or their coexistence strongly depend on the hydrothermal fluid circulation. We developed and validated a 2D/3D numerical model using a Finite Volume method to simulate heat driven fluid flows in the framework of the Cast3M code [3, 4]. We also developed a numerical model for hydrogen production and transport that is based on experimental studies of the serpentinization processes [5-6]. This geochemical model takes into account the exothermic and water-consuming behavior of the serpentinization reaction and it can be coupled to our thermo-hydrogeological model. Our simulations provide temperatures, mass fluxes and venting surface areas very close to those estimated in-situ [7]. We showed that a single-path model [8] was necessary to simulate high values such as the in-situ measured temperatures and estimated water mass fluxes of the Rainbow site [7]. This single-path model will be used to model the production and transport of hydrogen at the Rainbow hydrothermal site. References [1]Charlou et al. (2010) AGU Monograph series. [2]Seyfried et al. (2011) Geochim. Cosmochim. Acta 75, 1574-1593. [3]http://www-cast3m.cea.fr. [4]Martin & Fyfe (1970) Chem. Geol. 6, 185-202. [5] Marcaillou et al. (2011) Earth and Planet. Sci. Lett. 303, 281-290. [6]Malvoisin et al. (2012) JGR, 117, B01104. [7]Perez et al. (2012) submited to Computational Geosciences. [8]Lowell & Germanovich (2004) AGU, Washington DC, USA.

Hydrothermal simulation experiments as a tool for studies of the origin of life on Earth and other terrestrial planets: a review.

PubMed

Holm, Nils G; Andersson, Eva

2005-08-01

The potential of life's origin in submarine hydrothermal systems has been evaluated by a number of investigators by conducting high temperature-high pressure experiments involving organic compounds. In the majority of these experiments little attention has been paid to the importance of constraining important parameters, such as the pH and the redox state of the system. This is particularly revealed in the apparent difficulties in interpreting experimental data from hydrothermal organic synthesis and stability studies. However, in those cases where common mineral assemblages have been used in an attempt to buffer the pH and redox conditions to geologically and geochemically realistic values, theoretical and experimental data seem to converge. The use of mineral buffer assemblages provides a convenient way by which to constrain the experimental conditions. Studies at high temperatures and pressure in the laboratory have revealed a number of reactions that proceed rapidly in hydrothermal fluids, including the Strecker synthesis of amino acids. In other cases, the verification of postulated abiotic reaction mechanisms has not been possible, at least for large molecules such as large fatty acids and hydrocarbons. This includes the Fischer-Tropsch synthesis reaction. High temperature-high pressure experimental methods have been developed and used successfully for a long time in, for example, mineral solubility studies under hydrothermal conditions. By taking advantage of this experimental experience new and, at times, unexpected directions can be taken in bioorganic geochemistry, one being, for instance, primitive two-dimensional information coding. This article critically reviews some of the organic synthesis and stability experiments that have been conducted under simulated submarine hydrothermal conditions. We also discuss some of the theoretical and practical considerations that apply to hydrothermal laboratory studies of organic molecules related to the origin of life on Earth and probably also to the other terrestrial planets.

Temporal changes in taxonomic and functional diversity of fish assemblages downstream from mountaintop mining

USGS Publications Warehouse

Hitt, Nathaniel P.; Chambers, Douglas B.

2014-01-01

Mountaintop mining (MTM) affects chemical, physical, and hydrological properties of receiving streams, but the long-term consequences for fish-assemblage structure and function are poorly understood. We sampled stream fish assemblages using electrofishing techniques in MTM exposure sites and reference sites within the Guyandotte River basin, USA, during 2010–2011. We calculated indices of taxonomic diversity (species richness, abundance, Shannon diversity) and functional diversity (functional richness, functional evenness, functional divergence) to compare exposure and reference assemblages between seasons (spring and autumn) and across years (1999–2011). We based temporal comparisons on 2 sites that were sampled during 1999–2001 by Stauffer and Ferreri (2002). Exposure assemblages had lower taxonomic and functional diversity than reference assemblages or simulated assemblages that accounted for random variation. Differences in taxonomic composition between reference and exposure assemblages were associated with conductivity and aqueous Se concentrations. Exposure assemblages had fewer species, lower abundances, and less biomass than reference assemblages across years and seasons. Green Sunfish (Lepomis cyanellus) and Creek Chub (Semotilus atromaculatus) became numerically dominant in exposure assemblages over time because of their persistence and losses of other taxa. In contrast, species richness increased over time in reference assemblages, a result that may indicate recovery from drought. Mean individual biomass increased as fish density decreased and most obligate invertivores were apparently extirpated at MTM exposure sites. Effects of MTM were not related to physical-habitat conditions but were associated with water-quality variables, which may limit quality and availability of benthic macroinvertebrate prey. Simulations revealed effects of MTM that could not be attributed to random variation in fish assemblage structure.

Influential environmental gradients and spatiotemporal patterns of fish assemblages in the unimpounded Upper Mississippi River

USGS Publications Warehouse

Barko, V.A.; Palmer, M.W.; Herzog, D.P.; Ickes, B.S.

2004-01-01

We investigated variation of fish assemblages in response to environmental factors using Long Term Resource Monitoring Program data. Data were collected from 1993 to 2000 from five physical habitats in the unimpounded upper Mississippi River. We captured 89 species composing 18 families. Of these, 26% were fluvial specialists, 25% were fluvial dependent and 49% were generalists. The numerically dominant component of the adult fish assemblage (species accounting for >10% of total catch) accounted for 50% of the assemblage and was comprised of only three species: gizzard shad (Dorosoma cepedianum; 25%), common carp (Cyprinus carpio, 15%) and channel catfish (Ictalurus punctatus, 10%). The dominant component of the YOY fish assemblage was comprised of only two species, which accounted for 76% of the total catch: freshwater drum (Aplodinotus grunniens; 39%) and gizzard shad (37%). We used a cross-validation multivariate approach to explore how adult and young-of-the-year (YOY) assemblages varied with respect. to physical habitat and environmental gradients. Furthermore, we were interested how the fish assemblages changed over time. Partial canonical correspondence analyses (pCCA) demonstrated significant effects of physical habitats. Such effects differed between young-of-the-year and adult fishes. The four main environmental gradients influencing overall assemblage structure for both age groups were river elevation, water velocity, conductivity, and depth of gear deployment. Morisita's index revealed similar adult assemblage structure over time. However, the YOY assemblage present in 1995 was dissimilar from assemblages present during the other years. We speculate this is a lag effect from the backwater spawning episodes (floodpulse) that occurred with the 500-y flood in 1993. Shannon-Weiner diversity and Camargo's evenness indices were low, but stable across years for the adult assemblage, but varied across years for the YOY assemblage.

[Progress on suxamethonium chloride analysis].

PubMed

Jiang, Ming-Zhe; Cheng, Xiang-Wei; Chu, Jian-Xin

2013-12-01

Abstract: Suxamethonium chloride is a depolarizing muscle relaxant used in general anesthesia. In overdose, it causes adverse reactions such as bradycardia, arrhythmia, cardiac arrest, and death. The article reviews the progress on testing methods of suxamethonium chloride such as infrared spectroscopy, chemical color reaction, chemical titration, enzyme electrode, chromatography and mass spectrometry.

Thermochemical Constraints For the Formation Conditions of the Hydrothermal Alteration Mineralogy of Home Plate and Columbia Hills

NASA Astrophysics Data System (ADS)

Filiberto, J.; Schwenzer, S. P.

2012-12-01

Home Plate is a plateau in the Columbia Hills of Gusev Crater. It is dominated by igneous minerals (olivine, pyroxene, and magnetite) with small amounts of alteration minerals (hematite and nanophase oxides). Surrounding Home Plate are deposits containing diverse secondary mineral assemblages: Fe3+-sulfates deposits at Paso Robles, Dead Sea, Shredded, Arad, Tyrone, and Troy; Hematite-rich outcrops between Home Plate and Tyrone; SiO2-rich deposits possibly containing pyrite and/or marcasite at Fuzzy Smith; SiO2-rich, possibly opaline silica, deposits at Northern Valley, Eastern Valley, and Tyrone; and Mg-Fe-carbonate outcrops at Comanche in the Columbia Hills [1-4]. Here, we focus on using thermochemical modeling to understand the secondary alteration mineralogy at the Home Plate outcrop and surrounding Columbia Hills region in Gusev Crater. We use CHILLER [5] to evaluate mineral assemblages that are likely to form from the Martian Home Plate, Barn-Hill class rock Fastball in contact with a dilute fluid at various pressures, temperatures, and water-rock ratios. For details see [6]. In our models, hematite dominates the alteration assemblage at high W/R at 150°C, but is generally produced at W/R above 10. Goethite only forms at low temperature and W/R above 40 with a maximum around 100 and again around 100,000. Pyrite is produced at all temperatures but only at relatively high W/R. These results imply intermediate to high W/R and low to intermediate temperatures during alteration of the Home Plate region. Additional acidic brine, while not strictly excluded, is not required to form many of the observed phases. In contrast, the phyllosilicates recently invoked from orbital observations [4] indicate neutral to alkaline conditions - either accompanying the silica precipitation or as a separate event. For future exploration, our results emphasize that the observation of assemblages is critically important to understand mineral formation conditions and that minor phases such as fluorite can give valuable insights into host rock chemistry and alteration conditions. REFS: [1] Ruff S.W. et al. (2011) JGR 116, doi.10.1029/2010je003767. [2] Morris R.V. et al. (2008) JGR 113, doi.10.1029/2008je003201. [3] Morris R.V. et al. (2010) Science 329, 421-424. [4] Carter J. and Poulet F. (2012) Icarus 219, 250-253. [5] Reed M.H. and Spycher N.F. (2006) User Guide for CHILLER: A Program for Computing Water-Rock Reactions, Boiling, Mixing, and Other Reaction Processes in Squeous-Mineral-Gas Systems and Minplot Guide (3rd ed.), Eugene, Oregon: University of Oregon. [6] Schwenzer S.P. and Kring D.A. (2009) Geology 37, 1091-1094.

Ichthyoplankton assemblage structure of springs in the Yangtze Estuary revealed by biological and environmental visions.

PubMed

Zhang, Hui; Xian, Weiwei; Liu, Shude

2015-01-01

The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients.

Ichthyoplankton assemblage structure of springs in the Yangtze Estuary revealed by biological and environmental visions

PubMed Central

Zhang, Hui; Liu, Shude

2015-01-01

The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients. PMID:26312180

Gas-path leakage seal for a gas turbine

DOEpatents

Wolfe, C.E.; Dinc, O.S.; Bagepalli, B.S.; Correia, V.H.; Aksit, M.F.

1996-04-23

A gas-path leakage seal is described for generally sealing a gas-path leakage-gap between spaced-apart first and second members of a gas turbine (such as combustor casing segments). The seal includes a generally imperforate foil-layer assemblage which is generally impervious to gas and is located in the leakage-gap. The seal also includes a cloth-layer assemblage generally enclosingly contacting the foil-layer assemblage. In one seal, the first edge of the foil-layer assemblage is left exposed, and the foil-layer assemblage resiliently contacts the first member near the first edge to reduce leakage in the ``plane`` of the cloth-layer assemblage under conditions which include differential thermal growth of the two members. In another seal, such leakage is reduced by having a first weld-bead which permeates the cloth-layer assemblage, is attached to the metal-foil-layer assemblage near the first edge, and unattachedly contacts the first member. 4 figs.

Gas-path leakage seal for a gas turbine

DOEpatents

Wolfe, Christopher E.; Dinc, Osman S.; Bagepalli, Bharat S.; Correia, Victor H.; Aksit, Mahmut F.

1996-01-01

A gas-path leakage seal for generally sealing a gas-path leakage-gap between spaced-apart first and second members of a gas turbine (such as combustor casing segments). The seal includes a generally imperforate foil-layer assemblage which is generally impervious to gas and is located in the leakage-gap. The seal also includes a cloth-layer assemblage generally enclosingly contacting the foil-layer assemblage. In one seal, the first edge of the foil-layer assemblage is left exposed, and the foil-layer assemblage resiliently contacts the first member near the first edge to reduce leakage in the "plane" of the cloth-layer assemblage under conditions which include differential thermal growth of the two members. In another seal, such leakage is reduced by having a first weld-bead which permeates the cloth-layer assemblage, is attached to the metal-foil-layer assemblage near the first edge, and unattachedly contacts the first member.

Heterogeneous brittle-ductile deformation at shallow crustal levels under high thermal conditions: The case of a synkinematic contact aureole in the inner northern Apennines, southeastern Elba Island, Italy

NASA Astrophysics Data System (ADS)

Papeschi, Samuele; Musumeci, Giovanni; Mazzarini, Francesco

2017-10-01

We present an example of interaction between magmatism and tectonics at shallow crustal levels. In the Late Miocene the metamorphic units of the eastern Elba Island (northern Apennines) were intruded at very shallow crustal levels by a large pluton (> 60 km2) with the development of an hectometre-sized contact aureole defined by growth of low-pressure/high-temperature mineral assemblages (Pmax < 0.2 GPa, Tmax 650 °C). Structural data show that the contact aureole is associated with a km-sized antiform of the foliation and by several metre- to decametre-thick high-strain domains consisting of strongly foliated rocks containing synkinematic HT/LP mineral assemblages and ductile shear zones of variable thickness. These shear zones are characterized by a mylonitic foliation variably overprinted by cataclasis. Quartz microfabrics indicate that the dynamic crystallization processes progressively changed from grain boundary migration, associated with the thermal peak of contact metamorphism, to subgrain rotation and bulging recrystallization, the latter mostly associated with the cataclastic overprint. These transitions of recrystallization mechanisms in quartz are related to a progressive decrease of temperature during deformation. Deformation accompanied the development and cooling of the contact aureole, which recorded the switch from high temperature ductile to low temperature brittle conditions. The geometry of the studied deformation structures is consistent with the constraints of the regional tectonic evolution and its local interaction with the localized and transient thermal anomaly related to the coeval emplacement of igneous rocks.

The next chapter in experimental petrology: Metamorphic dehydration of polycrystalline gypsum captured in 3D microtomographic time series datasets

NASA Astrophysics Data System (ADS)

Bedford, John; Fusseis, Florian; Leclere, Henry; Wheeler, John; Faulkner, Dan

2016-04-01

Nucleation and growth of new minerals in response to disequilibrium is the most fundamental metamorphic process. However, our current kinetic models of metamorphic reactions are largely based on inference from fossil mineral assemblages, rather than from direct observation. The experimental investigation of metamorphism has also been limited, typically to concealed vessels that restrict the possibility of direct microstructural monitoring. Here we present one of the first time series datasets that captures a metamorphic reaction, dehydration of polycrystalline gypsum to form hemihydrate, in a series of three dimensional x-ray microtomographic datasets. We achieved this by installing an x-ray transparent hydrothermal cell (Fusseis et al., 2014, J. Synchrotron Rad. 21, 251-253) in the microtomography beamline 2BM at the Advanced Photon Source (USA). In the cell, we heated a millimetre-sized sample of Volterra Alabaster to 388 K while applying an effective pressure of 5 MPa. Using hard x-rays that penetrate the pressure vessel, we imaged the specimen 40 times while it reacted for approximately 10 hours. Each microtomographic dataset was acquired in 300 seconds without interrupting the reaction. Our absorption microtomographic data have a voxel size of 1.3 μm, which suffices to analyse the reaction progress in 4D. Gypsum can clearly be distinguished from hemihydrate and pores, which form due to the large negative solid volume change. On the resolved scale, the first hemihydrate needles appear after about 2 hours. Our data allow tracking of individual needles throughout the entire experiment. We quantified their growth rates by measuring their circumference. While individual grains grow at different rates, they all start slowly during the initial nucleation stage, then accelerate and grow steadily between about 200 and 400 minutes before reaction rate decelerates again. Hemihydrate needles are surrounded by porous haloes, which grow with the needles, link up and eventually encapsulate the remaining gypsum crystals. The reaction appears to be homogenously distributed throughout the sample and we find no evidence for metamorphic overpressure. We used an advanced machine learning algorithm (http://fiji.sc/Trainable_Weka_Segmentation) to segment the porosity from the microtomographic data and quantify it in Fiji (Schindelin et al., 2012, Nature Methods 9, 676-682). The porosity evolution follows the grain growth curves and reaches 23%, which indicates that the dehydration reaction is 80% complete. Our 4D data provide a unique opportunity not only to explore evolving reaction microtextures in spectacular visualisations but also to test general metamorphic theory. Our data, which track the entire reaction history from nucleation through to interaction with surrounding grains raise several questions. While individual grains grow quicker than others, why do, when grain growth is normalised against final grain size, all grains have a very similar growth history? This is not currently explained by an Avrami type model, and an alternative model for metamorphic reaction kinetics may be based on our data. Do metamorphic transport distances change during the reaction as the pore structure evolves? What controls the orientation of hemihydrate needles? In this presentation we present not only the images and data highlighting these questions, but also explore possible answers.

Biodiversity decreases disease through predictable changes in host community competence.

PubMed

Johnson, Pieter T J; Preston, Daniel L; Hoverman, Jason T; Richgels, Katherine L D

2013-02-14

Accelerating rates of species extinctions and disease emergence underscore the importance of understanding how changes in biodiversity affect disease outcomes. Over the past decade, a growing number of studies have reported negative correlations between host biodiversity and disease risk, prompting suggestions that biodiversity conservation could promote human and wildlife health. Yet the generality of the diversity-disease linkage remains conjectural, in part because empirical evidence of a relationship between host competence (the ability to maintain and transmit infections) and the order in which communities assemble has proven elusive. Here we integrate high-resolution field data with multi-scale experiments to show that host diversity inhibits transmission of the virulent pathogen Ribeiroia ondatrae and reduces amphibian disease as a result of consistent linkages among species richness, host composition and community competence. Surveys of 345 wetlands indicated that community composition changed nonrandomly with species richness, such that highly competent hosts dominated in species-poor assemblages whereas more resistant species became progressively more common in diverse assemblages. As a result, amphibian species richness strongly moderated pathogen transmission and disease pathology among 24,215 examined hosts, with a 78.4% decline in realized transmission in richer assemblages. Laboratory and mesocosm manipulations revealed an approximately 50% decrease in pathogen transmission and host pathology across a realistic diversity gradient while controlling for host density, helping to establish mechanisms underlying the diversity-disease relationship and their consequences for host fitness. By revealing a consistent link between species richness and community competence, these findings highlight the influence of biodiversity on infection risk and emphasize the benefit of a community-based approach to understanding infectious diseases.

Implications of Sponge Biodiversity Patterns for the Management of a Marine Reserve in Northern Australia

PubMed Central

Przeslawski, Rachel; Alvarez, Belinda; Kool, Johnathan; Bridge, Tom; Caley, M. Julian; Nichol, Scott

2015-01-01

Marine reserves are becoming progressively more important as anthropogenic impacts continue to increase, but we have little baseline information for most marine environments. In this study, we focus on the Oceanic Shoals Commonwealth Marine Reserve (CMR) in northern Australia, particularly the carbonate banks and terraces of the Sahul Shelf and Van Diemen Rise which have been designated a Key Ecological Feature (KEF). We use a species-level inventory compiled from three marine surveys to the CMR to address several questions relevant to marine management: 1) Are carbonate banks and other raised geomorphic features associated with biodiversity hotspots? 2) Can environmental (depth, substrate hardness, slope) or biogeographic (east vs west) variables help explain local and regional differences in community structure? 3) Do sponge communities differ among individual raised geomorphic features? Approximately 750 sponge specimens were collected in the Oceanic Shoals CMR and assigned to 348 species, of which only 18% included taxonomically described species. Between eastern and western areas of the CMR, there was no difference between sponge species richness or assemblages on raised geomorphic features. Among individual raised geomorphic features, sponge assemblages were significantly different, but species richness was not. Species richness showed no linear relationships with measured environmental factors, but sponge assemblages were weakly associated with several environmental variables including mean depth and mean backscatter (east and west) and mean slope (east only). These patterns of sponge diversity are applied to support the future management and monitoring of this region, particularly noting the importance of spatial scale in biodiversity assessments and associated management strategies. PMID:26606745

Histophagous ciliate Pseudocollinia brintoni and bacterial assemblage interaction with krill Nyctiphanes simplex. I. Transmission process.

PubMed

Gómez-Gutiérrez, Jaime; López-Cortés, Alejandro; Aguilar-Méndez, Mario J; Del Angel-Rodríguez, Jorge A; Tremblay, Nelly; Zenteno-Savín, Tania; Robinson, Carlos J

2015-10-27

Histophagous ciliates of the genus Pseudocollinia cause epizootic events that kill adult female krill (Euphausiacea), but their mode of transmission is unknown. We compared 16S rRNA sequences of bacterial strains isolated from stomachs of healthy krill Nyctiphanes simplex specimens with sequences of bacterial isolates and sequences of natural bacterial communities from the hemocoel of N. simplex specimens infected with P. brintoni to determine possible transmission pathways. All P. brintoni endoparasitic life stages and the transmission tomite stage (outside the host) were associated with bacterial assemblages. 16S rRNA sequences from isolated bacterial strains showed that Photobacterium spp. and Pseudoalteromonas spp. were dominant members of the bacterial assemblages during all life phases of P. brintoni and potential pathobionts. They were apparently unaffected by the krill's immune system or the histophagous activity of P. brintoni. However, other bacterial strains were found only in certain P. brintoni life phases, indicating that as the infection progressed, microhabitat conditions and microbial interactions may have become unfavorable for some strains of bacteria. Trophic infection is the most parsimonious explanation for how P. brintoni infects krill. We estimated N. simplex vulnerability to P. brintoni infection during more than three-fourths of their life span, infecting mostly adult females. The ciliates have relatively high prevalence levels (albeit at <10% of sampled stations) and a short life cycle (estimated <7 d). Histophagous ciliate-krill interactions may occur in other krill species, particularly those that form dense swarms and attain high population densities that potentially enhance trophic transmission and allow completion of the Pseudocollinia spp. life cycle.

Partial eclogitization of the Ambolten gabbro-norite, north-east Greenland Caledonides

USGS Publications Warehouse

Gilotti, J.A.; Elvevold, S.

1998-01-01

Partially eclogitized igneous bodies composed of gabbro, leucogabbro, anorthosite and cross-cutting diabase dikes are well represented in the North-East Greenland Eclogite Province. A 200 x 100 meter intrusive body on Ambolten Island (78?? 20' N, 19?? 15' W) records a prograde transition from gabbro-norite to eclogite facies coronitic metagabro-norite surrounded by hydrated margins of undeformed to strongly foliated amphibolite. Igneous plagioclase + olivine + enstatite + augite + oxides convert to eclogite facies assemblages consisting of garnet, omphacite, diopside, enstatite, kyanite, zoisite, rutile and pargasitic amphibole through several coronitic reactions. Relict cumulus plagioclase laths are replaced by an outer corona of garnet, an inner corona of omphacite and an internal region of sodic plagioclase, garnet, kyanite, omphacite and zoisite. Olivine and intercumulus pyroxene are partly replaced by metamorphic pyroxenes and amphibole. The corona structures, zoning patterns, diversity of mineral compositions in a single thin section, and preservation of metastable asemblages are characteristic of diffusion-controlled metamorphism. The most extreme disequilibrium is found in static amphibolites, where igneous pyroxenes, plagioclase domains with eclogite facies, assemblages, and matrix amphibole coexist. Complete eclogitization was not attained at Ambolten due to a lack of fluids needed to drive diffusion during prograde and retrograde metamorphism. The P-T conditions of the high-pressure metamorphism are estimated at ??? 750??C and > 18 kbar. Well-equilibrated, foliated amphibolites from the margin of the gabbro-norite supports our contention that the entire North-East Greenland Eclogite Province experienced Caledonian high-pressure metamorphism, even though no eclogite facies assemblages have been found in the quartzofeldspathic host gneisses to date.

The origin of garnet in the anorthosite-charnockite suite of the Adirondacks

USGS Publications Warehouse

McLelland, J.M.; Whitney, P.R.

1977-01-01

Detailed analysis of textural and chemical criteria in rocks of the anorthosite-charnockite suite of the Adirondack Highlands suggests that development of garnet in silica-saturated rocks of the suite occurs according to the reaction: {Mathematical expression}, where ?? is a function of the distribution of Fe and Mg between the several coexisting ferromagnesian phases. Depending upon the relative amounts of Fe and Mg present, quartz may be either a reactant or a product. Using an aluminum-fixed reference frame, this reaction can be restated in terms of a set of balanced partial reactions describing the processes occurring in spatially separated domains within the rock. The fact that garnet invariably replaces plagioclase as opposed to the other reactant phases indicates that the aluminum-fixed model is valid as a first approximation. This reaction is univariant and produces unzoned garnet. It differs from a similar equation proposed by de Waard (1965) for the origin of garnet in Adirondack metabasic rocks, i.e. 6 Orthopyroxene+2 Anorthite = Clinopyroxene+Garnet+2 Quartz, the principle difference being that iron oxides (ilmenite and/or magnetite) are essential reactant phases in the present reactions. The product assemblage (garnet+clinopyroxene+plagioclase ?? orthopyroxene ?? quartz) is characteristic of the clinopyroxene-almandine subfacies of the granulite facies. ?? 1977 Springer-Verlag.

No correlation between the diversity and productivity of assemblages: evidence from the phytophage and predator assemblages in various cotton agroecosystems.

PubMed

Gao, Feng; Men, XingYuan; Ge, Feng

2014-09-01

Biodiversity research has shown that primary productivity increases with plant species number, especially in many experimental grassland systems. Here, we assessed the correlation between productivity and diversity of phytophages and natural enemy assemblages associated with planting date and intercropping in four cotton agroecosystems. Twenty-one pairs of data were used to determine Pearson correlations between species richness, total number of individuals, diversity indices and productivity for each assemblage every five days from 5 June to 15 September 2012. At the same trophic level, the productivity exhibited a significant positive correlation with species richness of the phytophage or predator assemblage. A significant correlation was found between productivity and total number of individuals in most cotton fields. However, no significant correlations were observed between productivity and diversity indices (including indices of energy flow diversity and numerical diversity) in most cotton fields for either the phytophage or the predator assemblages. Species richness of phytophage assemblage and total individual numbers were significantly correlated with primary productivity. Also, species richness of natural enemy assemblage and total number of individuals correlated with phytophage assemblage productivity. A negative but not significant correlation occurred between the indices of numerical diversity and energy flow diversity and lower trophic-level productivity in the cotton-phytophage and phytophage-predator assemblages for most intercropped cotton agroecosystems. Our results clearly showed that there were no correlations between diversity indices and productivity within the same or lower trophic levels within the phytophage and predator assemblages in cotton agroecosystems, and inter-cropped cotton fields had a stronger ability to support the natural enemy assemblage and potentially to reduce phytophages.

Comparison of species composition and richness of fish assemblages in altered and unaltered littoral habitats

USGS Publications Warehouse

Poe, T.P.; Hatcher, C.O.; Brown, C.L.; Schloesser, D.W.

1986-01-01

Species composition and richness of fish assemblages in altered and unaltered littoral habitats in Lake St. Clair, Michigan, differed between areas. A percid-cyprinid-cyprinodontid assemblage dominated in the unaltered area, Muscamoot Bay, which has a natural shoreline (with almost no alteration due to dredging or bulkheading), high water quality, and high species richness of aquatic macrophytes. A centrarchid assemblage dominated in the altered area, Belvidere Bay, which has a bulkheaded shoreline, many dredged areas, reduced water quality due to inputs of nutrients from a nearby river, and relatively low species richness of aquatic macrophytes. Habitat factors, species richness and abundance of aquatic macrophytes, had the most influence on fish community structure in both areas. The percid-cyprinid-cyprinodontid assemblage was significantly correlated with six species of macrophytes whereas the centrarchid assemblage was significantly correlated with only four. These patterns suggest that preference for diverse habitats was higher, and tolerance to habitat alteration lower, in percid-cyprinid-cyprinodontid assemblages than in centrarchid assemblages.

Spatial and temporal variability in the structure of invertebrate assemblages in control stream mesocosms.

PubMed

Wong, Diana C L; Maltby, Lorraine; Whittle, Don; Warren, Philip; Dorn, Philip B

2004-01-01

Outdoor stream mesocosm studies conducted between 1992 and 1996 at two facilities enabled the investigation of structural variability in invertebrate assemblages within and between studies. Temporal variability of benthic invertebrate assemblages between eight replicate streams within a study was assessed in a 28-day mesocosm study without chemical treatment. Cluster analysis, non-metric multidimensional scaling, and principal component analysis each showed the untreated assemblages as structurally distinct groups on the three sampling days. The assemblages between the eight replicate streams showed >88% Bray-Curtis similarity at any one time during the study. In addition, pre-treatment data from a series of four studies conducted at one facility were used to examine structural variability in the starting benthic invertebrate assemblages between studies. Invertebrate assemblages were structurally distinct at the start of each mesocosm study conducted in different years at the same facility and the taxa responsible for differences in the assemblages were also different each year. The implications of temporal and spatial variability in benthic invertebrate assemblages within and between mesocosm studies with regards to species sensitivity and study repeatability should be considered when results of such studies are used in risk assessment.

Case-Control Study of Risk Factors for Sporadic Giardiasis and Parasite Assemblages in North West England.

PubMed

Minetti, Corrado; Lamden, Kenneth; Durband, Caroline; Cheesbrough, John; Platt, Katherine; Charlett, Andre; O'Brien, Sarah J; Fox, Andrew; Wastling, Jonathan M

2015-10-01

Giardia duodenalis is a major cause of infectious gastroenteritis worldwide, and it is diversified into eight genetic assemblages (A to H), which are distinguishable only by molecular typing. There is some evidence that the assemblages infecting humans (assemblages A and B) may have different transmission routes, but systematically acquired data, combining epidemiological and molecular findings, are required. We undertook a case-control study with Giardia genotyping in North West England, to determine general and parasite assemblage-specific risk factors. For people without a history of foreign travel, swimming in swimming pools and changing diapers were the most important risk factors for the disease. People infected with assemblage B reported a greater number of symptoms and higher frequencies of vomiting, abdominal pain, swollen stomach, and loss of appetite, compared with people infected with assemblage A. More importantly, keeping a dog was associated only with assemblage A infections, suggesting the presence of a potential zoonotic reservoir for this assemblage. This is the first case-control study to combine epidemiological data with Giardia genotyping, and it shows the importance of integrating these two levels of information for better understanding of the epidemiology of this pathogen. Copyright © 2015, Minetti et al.

Land use structures fish assemblages in reservoirs of the Tennessee River

USGS Publications Warehouse

Miranda, Leandro E.; Bies, J. M.; Hann, D. A.

2015-01-01

Inputs of nutrients, sediments and detritus from catchments can promote selected components of reservoir fish assemblages, while hindering others. However, investigations linking these catchment subsidies to fish assemblages have generally focussed on one or a handful of species. Considering this paucity of community-level awareness, we sought to explore the association between land use and fish assemblage composition in reservoirs. To this end, we compared fish assemblages in reservoirs of two sub-basins of the Tennessee River representing differing intensities of agricultural development, and hypothesised that fish assemblage structure indicated by species percentage composition would differ among reservoirs in the two sub-basins. Using multivariate statistical analysis, we documented inter-basin differences in land use, reservoir productivity and fish assemblages, but no differences in reservoir morphometry or water regime. Basins were separated along a gradient of forested and non-forested catchment land cover, which was directly related to total nitrogen, total phosphorous and chlorophyll-a concentrations. Considering the extensive body of knowledge linking land use to aquatic systems, it is reasonable to postulate a hierarchical model in which productivity has direct links to terrestrial inputs, and fish assemblages have direct links to both land use and productivity. We observed a shift from an invertivore-based fish assemblage in forested catchments to a detritivore-based fish assemblage in agricultural catchments that may be a widespread pattern among reservoirs and other aquatic ecosystems.

Demersal and larval fish assemblages in the Chukchi Sea

NASA Astrophysics Data System (ADS)

Norcross, Brenda L.; Holladay, Brenda A.; Busby, Morgan S.; Mier, Kathryn L.

2010-01-01

A multidisciplinary research cruise was conducted in the Chukchi Sea in summer 2004 during which we investigated assemblages of small demersal fishes and ichthyoplankton and the water masses associated with these assemblages. This study establishes a baseline of 30 demersal fish and 25 ichthyoplankton taxa in US and Russian waters of the Chukchi Sea. Presence/absence of small demersal fish clustered into four assemblages: Coastal Fishes, Western Chukchi Fishes, South Central Chukchi Fishes, and North Central Chukchi Fishes. Habitats occupied by small demersal fishes were characterized by sediment type, bottom salinity, and bottom temperature. Abundance of ichthyoplankton grouped into three assemblages with geographical extent similar to that of the bottom assemblages, except that there was a single assemblage for Central Chukchi Fishes. Water-column temperature and salinity characterized ichthyoplankton habitats. Three water masses, Alaska Coastal Water, Bering Sea Water, and Winter Water, were identified from both bottom and depth-averaged water-column temperature and salinity. A fourth water mass, Resident Chukchi Water, was identified only in the bottom water. The water mass and habitat characteristics with which demersal and larval fish assemblages were associated create a baseline to measure anticipated effects of climate change that are expected to be most severe at high latitudes. Monitoring fish assemblages could be a tool for assessing the effects of climate change. Climate-induced changes in distributions of species would result in a restructuring of fish assemblages in the Chukchi Sea.

Fish assemblage structure in an Oklahoma Ozark stream before and after rainbow trout introduction

USGS Publications Warehouse

Walsh, M.G.; Winkelman, D.L.

2005-01-01

Rainbow trout Oncorhynchus mykiss have been widely stocked throughout the United States as a popular sport fish. Our study was initiated to evaluate potential effects of rainbow trout introduction on native fishes to inform future decisions about trout stocking in northeastern Oklahoma streams. We sampled fish assemblages in pools, glides, and riffles in Brush Creek, Delaware County, Oklahoma, from February 2000 to September 2002, and experimentally stocked rainbow trout into the stream from November 2000 to March 2001 and November 2001 to March 2002. We used a combination of multivariate analyses to evaluate seasonal and habitat effects on native fish assemblages and to compare assemblage structure between prestocking, the first year of stocking, and the second year of stocking. Mesohabitat type significantly affected assemblage structure among years, whereas we did not detect an effect of season. We did not detect differences in assemblage structure among years in glide or riffle habitats. Native fish assemblage structure in pool habitats before rainbow trout introduction differed from assemblage structure in both the first and second year of stocking. Declines in seven species, including two native game fish (smallmouth bass Micropterus dolomieu and bluegill Lepomis machrochirus), contributed to assemblage dissimilarity in pool habitats between prestocking conditions and the second year of stocking. Our results indicate that stocking rainbow trout may cause local disruption in assemblage structure in pool habitats. ?? 2004 by the American Fisheries Society.

Diatoms and stratigraphically significant silicoflagellates from the Atlantic Margin Coring Project and other Atlantic margin sites

USGS Publications Warehouse

Abbott, W.H.

1980-01-01

In 1976, 19 sites were cored along the U.S. Atlantic Continental Shelf and Slope by the Oceanographic Branch of the U.S. Geological Survey aboard the Glomar Conception. Only 6 sites contained siliceous microfossil assemblages of sufficient quantity and quality for biostratigraphic study. Two of the sites, AMCOR (Atlantic Margin Coring Project) 6002 and AMCOR 6011, contained good Miocene assemblages: a small Pleistocene assemblage occurred at the top of AMCOR 6002. A Late Miocene to Early Pliocene assemblage was encountered in AMCOR 6007B. AMCOR 6013, 6019, and 6021 contained Pleistocene assemblages. In addition to the AMCOR cores, 3 additional Atlantic Margin cores were studied. These were the JOIDES 1 (Caldrill) core, and Atlantic Slope Project (ASP) cores 10 and 22. JOIDES 1 contains a Middle Miocene assemblage similar to AMCOR 6002. ASP 10 contains a Lower Pliocene assemblage and ASP 22 contains a Middle to Late Oligocene and a Pleistocene assemblage. Siliceous assemblages at all sites consisted mainly of shallow shelf species, including brackish and marine benthics and occasionally freshwater forms. Although planktonic forms were present, they were few and most were extant cosmopolitan species. This makes it difficult to correlate the biostratigraphy of the sediments with siliceous microfossil zonations from other oceans. The only biostratigraphic zonations for Atlantic Shelf diatom assemblages are for the Miocene.

Giardiasis in NSW: Identification of Giardia duodenalis assemblages contributing to human and cattle cases, and an epidemiological assessment of sporadic human giardiasis.

PubMed

Asher, A J; Hose, G; Power, M L

2016-10-01

Two genetic assemblages (A and B) of the protozoan parasite species, Giardia duodenalis, infect humans, domestic animals and wildlife. In New South Wales, Australia, over 2000 sporadic human giardiasis cases are reported annually, but parasite sources and links between sporadic cases are unknown. This study describes G. duodenalis assemblages contributing to human and cattle cases in NSW, and examines demographic, spatial, and temporal distributions of NSW human infections and G. duodenalis assemblages. Genotyping by PCR-restriction fragment length polymorphism of the glutamate dehydrogenase (gdh) gene identified G. duodenalis assemblage B as the most common (86%) cause of infection among human cases (n=165). Approximately 37% of cattle DNA samples were PCR positive (18S rRNA, gdh), and G. duodenalis assemblages E (69%) or B (31%) were identified from these samples. Human assemblage A was more common among older age groups, and seasonality in the geographic dispersal of human assemblage A was observed. The results of this study indicate G. duodenalis assemblage B is highly prevalent among humans in NSW, and the potential for cross-species transmission exists between humans and cattle in this region. Spatio-temporal and demographic distributions of human assemblage A and B are highlighted, and risk factors associated with these dispersal patterns warrants further research. Copyright © 2016 Elsevier B.V. All rights reserved.

Effects of hydrologic connectivity on aquatic macroinvertebrate assemblages in different marsh types

USGS Publications Warehouse

Kang, Sung-Ryong; King, Sammy L.

2013-01-01

Hydrologic connectivity can be an important driver of aquatic macroinvertebrate assemblages. Its effects on aquatic macroinvertebrate assemblages in coastal marshes, however, are relatively poorly studied. We evaluated the effects of lateral hydrologic connectivity (permanently connected ponds: PCPs; temporary connected ponds: TCPs), and other environmental variables on aquatic macroinvertebrate assemblages and functional feeding groups (FFGs) in freshwater, brackish, and saline marshes in Louisiana, USA. We hypothesized that (1) aquatic macroinvertebrate assemblages in PCPs would have higher assemblage metric values (density, biomass, Shannon-Wiener diversity) than TCPs and (2) the density and proportional abundance of certain FFGs (i.e. scrapers, shredders, and collectors) would be greater in freshwater marsh than brackish and saline marshes. The data in our study only partially supported our first hypothesis: while freshwater marsh PCPs had higher density and biomass than TCPs, assemblage metric values in saline TCPs were greater than saline PCPs. In freshwater TCPs, long duration of isolation limited access of macroinvertebrates from adjacent water bodies, which may have reduced assemblage metric values. However, the relatively short duration of isolation in saline TCPs provided more stable or similar habitat conditions, facilitating higher assemblage metric values. As predicted by our second hypothesis, freshwater PCPs and TCPs supported a greater density of scrapers, shredders, and collectors than brackish and saline ponds. Aquatic macroinvertebrate assemblages seem to be structured by individual taxa responses to salinity as well as pond habitat attributes.

Intrinsic qualities of primate bones as predictors of skeletal element representation in modern and fossil carnivore feeding assemblages.

PubMed

Carlson, Kristian J; Pickering, Travis Rayne

2003-04-01

Plio-Pleistocene faunal assemblages from Swartkrans Cave (South Africa) preserve large numbers of primate remains. Brain, C.K., 1981. The Hunters or the Hunted? An Introduction to African Cave Taphonomy. University of Chicago Press, Chicago suggested that these primate subassemblages might have resulted from a focus by carnivores on primate predation and bone accumulation. Brain's hypothesis prompted us to investigate, in a previous study, this taphonomic issue as it relates to density-mediated destruction of primate bones (J. Archaeol. Sci. 29, 2002, 883). Here we extend our investigation of Brain's hypothesis by examining additional intrinsic qualities of baboon bones and their role as mediators of skeletal element representation in carnivore-created assemblages. Using three modern adult baboon skeletons, we collected data on four intrinsic bone qualities (bulk bone mineral density, maximum length, volume, and cross-sectional area) for approximately 81 bones per baboon skeleton. We investigated the relationship between these intrinsic bone qualities and a measure of skeletal part representation (the percentage minimum animal unit) for baboon bones in carnivore refuse and scat assemblages. Refuse assemblages consist of baboon bones not ingested during ten separate experimental feeding episodes in which individual baboon carcasses were fed to individual captive leopards and a spotted hyena. Scat assemblages consist of those baboon bones recovered in carnivore regurgitations and feces resulting from the feeding episodes. In refuse assemblages, volume (i.e., size) was consistently the best predictor of element representation, while cross-sectional area was the poorest predictor in the leopard refuse assemblage and bulk bone mineral density (i.e., a measure of the proportion of cortical to trabecular bone) was the poorest predictor in the hyena refuse assemblage. In light of previous documentation of carnivore-induced density-mediated destruction to bone assemblages, we interpret the current findings as suggestive of the secondary importance of bulk bone mineral density to other intrinsic qualities of skeletal elements (e.g., size, maximum dimension, and average cross-sectional area). It is only when skeletal elements are too large for consumption (e.g., many long bones) that they are fragmented following intra-element patterns of density-mediated carnivore destruction. There appears to be a size threshold beneath which bulk bone mineral density contributes little to mediating carnivore destruction of carcasses. Thus, depending on body size of the predator, body size of the prey, and specific size of the element, bulk bone mineral density may play little or no role of primary importance in mediating the destruction of skeletal elements. We compare patterns in modern comparative assemblages to patterns in primate fossil assemblages from Swartkrans. One of the fossil assemblages, Swartkrans Member 1, Hanging Remnant, most closely approximates a hyena (possibly refuse) assemblage pattern, while the Swartkrans Member 2 assemblage most closely approximates a leopard (possibly scat) assemblage pattern. The Swartkrans Member 1, Lower Bank, assemblage does not closely approximate any of our modern comparative assemblage patterns.

Miocene and early Pliocene epithermal gold-silver deposits in the northern Great Basin, western United States: Characteristics, distribution, and relationship to Magmatism

USGS Publications Warehouse

John, D.A.

2001-01-01

Numerous important Miocene and early Pliocene epithermal Au-Ag deposits are present in the northern Great Basin. Most deposits are spatially and temporally related to two magmatic assemblages: bimodal basalt-rhyolite and western andesite. These magmatic assemblages are petrogenetic suites that reflect variations in tectonic environment of magma generation. The bimodal assemblage is a K-rich tholeiitic series formed during continental rifting. Rocks in the bimodal assemblage consist mostly of basalt to andesite and rhyolite compositions that generally contain anhydrous and reduced mineral assemblages (e.g., quartz + fayalite rhyolites). Eruptive forms include mafic lava flows, dikes, cinder and/or spatter cones, shield volcanoes, silicic flows, domes, and ash-flow calderas. Fe-Ti oxide barometry indicates oxygen fugacities between the magnetite-wustite and fayalite-magnetite-quartz oxygen buffers for this magmatic assemblage. The western andesite assemblage is a high K calc-alkaline series that formed a continental-margin are related to subduction of oceanic crust beneath the western coast of North America. In the northern Great Basin, most of the western andesite assemblage was erupted in the Walker Lane belt, a zone of transtension and strike-slip faulting. The western andesite assemblage consists of stratovolcanoes, dome fields, and subvolcanic plutons, mostly of andesite and dacite composition. Biotite and hornblende phenocrysts are abundant in these rocks. Oxygen fugacities of the western andesite assemblage magmas were between the nickel-nickel oxide and hematite-magnetite buffers, about two to four orders of magnitude greater than magmas of the bimodal assemblage. Numerous low-sulfidation Au-Ag deposits in the bimodal assemblage include deposits in the Midas (Ken Snyder), Sleeper, DeLamar, Mule Canyon, Buckhorn, National, Hog Ranch, Ivanhoe, and Jarbidge districts; high-sulfidation gold and porphyry copper-gold deposits are absent. Both high- and low-sulfidation gold-silver and porphyry copper-gold deposits are affiliated with the western andesite assemblage and include the Comstock Lode, Tonopah, Goldfield, Aurora, Bodie, Paradise Peak, and Rawhide deposits. Low-sulfidation Au-Ag deposits in the bimodal assemblage formed under relatively low oxygen and sulfur fugacities and have generally low total base metal (Cu + Pb + Zn) contents, low Ag/Au ratios, and notably high selenide mineral contents compared to temporally equivalent low-sulfidation deposits in the western andesite assemblage. Petrologic studies suggest that these differences may reflect variations in the magmatic-tectonic settings of the associated magmatic assemblages-deposits in the western andesite assemblage formed from oxidized, water-rich, subduction-related calc-alkaline magmas, whereas deposits in the bimodal assemblage were associated with reduced, water-poor tholeiitic magmas derived from the lithospheric mantle during continental extension. The contrasting types and characteristics of epithermal deposits and their affinities with associated igneous rocks suggest that a genetic relationship is present between these Au-Ag deposits and their temporally associated magmatism, although available data do not prove this relationship for most low-sulfidation deposits.

Temporal trends in algae, benthic invertebrate, and fish assemblages in streams and rivers draining basins of varying land use in the south-central United States, 1993-2007

USGS Publications Warehouse

Miller, Matthew P.; Kennen, Jonathan G.; Mabe, Jeffrey A.; Mize, Scott V.

2012-01-01

Site-specific temporal trends in algae, benthic invertebrate, and fish assemblages were investigated in 15 streams and rivers draining basins of varying land use in the south-central United States from 1993–2007. A multivariate approach was used to identify sites with statistically significant trends in aquatic assemblages which were then tested for correlations with assemblage metrics and abiotic environmental variables (climate, water quality, streamflow, and physical habitat). Significant temporal trends in one or more of the aquatic assemblages were identified at more than half (eight of 15) of the streams in the study. Assemblage metrics and abiotic environmental variables found to be significantly correlated with aquatic assemblages differed between land use categories. For example, algal assemblages at undeveloped sites were associated with physical habitat, while algal assemblages at more anthropogenically altered sites (agricultural and urban) were associated with nutrient and streamflow metrics. In urban stream sites results indicate that streamflow metrics may act as important controls on water quality conditions, as represented by aquatic assemblage metrics. The site-specific identification of biotic trends and abiotic–biotic relations presented here will provide valuable information that can inform interpretation of continued monitoring data and the design of future studies. In addition, the subsets of abiotic variables identified as potentially important drivers of change in aquatic assemblages provide policy makers and resource managers with information that will assist in the design and implementation of monitoring programs aimed at the protection of aquatic resources.

Ichthyoplankton assemblages of coastal west-central Lake Erie and associated habitat characteristics

USGS Publications Warehouse

McKenna, J.E.; Hunter, R. Douglas; Fabrizio, M.C.; Savino, J.F.; Todd, T.N.; Bur, M.

2008-01-01

Early life stage survival often determines fish cohort strength and that survival is affected by habitat conditions. The structure and dynamics of ichthyoplankton assemblages can tell us much about biodiversity and fish population dynamics, but are poorly understood in nearshore areas of the Great Lakes, where most spawning and nursery habitats exist. Ichthyoplankton samples were collected with a neuston net in waters 2-13 m deep weekly or biweekly from mid-April through August, during 3 years (2000-2002) as part of a study of fish assemblages in west-central Lake Erie. A suite of abiotic variables was simultaneously measured to characterize habitat. Cluster and ordination analyses revealed several distinct ichthyoplankton assemblages that changed seasonally. A lake whitefish (Coregonus clupeaformis) dominated assemblage appeared first in April. In May, assemblages were dominated by several percid species. Summer assemblages were overwhelmingly dominated by emerald shiner (Notropis atherinoides), with large gizzard shad (Dorosoma cepedianum) and alewife (Alosa pseudoharengus) components. This seasonal trend in species assemblages was also associated with increasing temperature and water clarity. Water depth and drift processes may also play a role in structuring these assemblages. The most common and widely distributed assemblages were not associated with substratum type, which we characterized as either hard or soft. The timing of hatch and larval growth separated the major groups in time and may have adaptive significance for the members of each major assemblage. The quality and locations (with reference to lake circulation) of spawning and nursery grounds may determine larval success and affect year class strength.

Trace element zoning as a record of chemical disequilibrium during garnet growth

NASA Astrophysics Data System (ADS)

Chernoff, Carlotta B.; Carlson, William D.

1999-06-01

Trace element concentrations in pelitic garnets from the Picuris Range of New Mexico display precipitous changes coincident with abrupt variations in Ca concentration. These patterns probably arise from the transitory participation of different trace element enriched phases in the garnet forming reaction. Changes in the reactant and product assemblages occur at different times during the reaction history for crystals of different size, so they cannot be the result of any event affecting the entire rock, such as a change in pressure, temperature, or fluid composition. Instead, they reflect kinetic factors that cause Ca, Y, Yb, P, Ti, Sc, Zr, Hf, Sr, Na, and Li to fail to achieve chemical equilibrium during garnet growth. Caution is needed to avoid misinterpreting excursions in the concentration of these elements as event markers recording simultaneous rockwide changes in intensive parameters, when in fact they may record transient disequilibrium states that are local in scope, and not contemporaneous.

Bleaching response of coral species in the context of assemblage response

NASA Astrophysics Data System (ADS)

Swain, Timothy D.; DuBois, Emily; Goldberg, Scott J.; Backman, Vadim; Marcelino, Luisa A.

2017-06-01

Caribbean coral reefs are declining due to a mosaic of local and global stresses, including climate change-induced thermal stress. Species and assemblage responses differ due to factors that are not easily identifiable or quantifiable. We calculated a novel species-specific metric of coral bleaching response, taxon- α and - β, which relates the response of a species to that of its assemblages for 16 species over 18 assemblages. By contextualizing species responses within the response of their assemblages, the effects of environmental factors are removed and intrinsic differences among taxa are revealed. Most corals experience either a saturation response, overly sensitive to weak stress ( α > 0) but under-responsive compared to assemblage bleaching ( β < 1), or a threshold response, insensitive to weak stress ( α < 0) but over-responsive compared to assemblage bleaching ( β > 1). This metric may help reveal key factors of bleaching susceptibility and identify species as targets for conservation.

Bleaching response of coral species in the context of assemblage response.

PubMed

Swain, Timothy D; DuBois, Emily; Goldberg, Scott J; Backman, Vadim; Marcelino, Luisa A

2017-06-01

Caribbean coral reefs are declining due to a mosaic of local and global stresses, including climate change-induced thermal stress. Species and assemblage responses differ due to factors that are not easily identifiable or quantifiable. We calculated a novel species-specific metric of coral bleaching response, taxon-α and -β, which relates the response of a species to that of its assemblages for 16 species over 18 assemblages. By contextualizing species responses within the response of their assemblages, the effects of environmental factors are removed and intrinsic differences among taxa are revealed. Most corals experience either a saturation response, overly-sensitive to weak stress (α > 0) but under-responsive compared to assemblage bleaching (β < 1), or a threshold response, insensitive to weak stress (α < 0) but over-responsive compared to assemblage bleaching (β > 1). This metric may help reveal key factors of bleaching susceptibility and identify species as targets for conservation.

Comparison between epiphyte assemblages of leaves and rhizomes of the seagrass Posidonia oceanica subjected to different levels of anthropogenic eutrophication

NASA Astrophysics Data System (ADS)

Balata, David; Bertocci, Iacopo; Piazzi, Luigi; Nesti, Ugo

2008-09-01

This paper aimed to compare epiphyte assemblages of leaves and rhizomes of Posidonia oceanica exposed to different levels of concentration of nutrients. The same design including a potentially impacted meadow and two reference meadows was used in each of two locations, characterized by the presence of a city or of suspended cages of a fish farm, respectively. This allowed to test for the consistency of responses of epiphytic assemblages to different sources of eutrophication. In both studies, results documented differences in patterns of composition and abundance of epiphytic assemblages on leaves between disturbed and reference meadows, while assemblages on rhizomes did not appear sensitive to this kind of disturbance. Moreover, in potentially impacted meadows, both assemblages showed different patterns of spatial variability compared to reference assemblages. Species composition and abundance of epiphyte assemblages seemed suitable for detecting moderate nutrient increases, even if adequate sampling designs are needed to separate patterns related to the large natural spatial variability of these systems from those related to changes in environmental conditions.

Lions as Bone Accumulators? Paleontological and Ecological Implications of a Modern Bone Assemblage from Olduvai Gorge.

PubMed

Arriaza, Mari Carmen; Domínguez-Rodrigo, Manuel; Yravedra, José; Baquedano, Enrique

2016-01-01

Analytic models have been developed to reconstruct early hominin behaviour, especially their subsistence patterns, revealed mainly through taphonomic analyses of archaeofaunal assemblages. Taphonomic research is used to discern which agents (carnivores, humans or both) generate the bone assemblages recovered at archaeological sites. Taphonomic frameworks developed during the last decades show that the only large-sized carnivores in African biomes able to create bone assemblages are leopards and hyenas. A carnivore-made bone assemblage located in the short-grassland ecological unit of the Serengeti (within Olduvai Gorge) was studied. Taphonomic analyses of this assemblage including skeletal part representation, bone density, breakage patterns and anatomical distribution of tooth marks, along with an ecological approach to the prey selection made by large carnivores of the Serengeti, were carried out. The results show that this bone assemblage may be the first lion-accumulated assemblage documented, although other carnivores (namely spotted hyenas) may have also intervened through postdepositional ravaging. This first faunal assemblage potentially created by lions constitutes a new framework for neotaphonomic studies. Since lions may accumulate carcasses under exceptional circumstances, such as those documented at the site reported here, this finding may have important consequences for interpretations of early archaeological and paleontological sites, which provide key information about human evolution.

Lions as Bone Accumulators? Paleontological and Ecological Implications of a Modern Bone Assemblage from Olduvai Gorge

PubMed Central

Arriaza, Mari Carmen; Domínguez-Rodrigo, Manuel; Yravedra, José; Baquedano, Enrique

2016-01-01

Analytic models have been developed to reconstruct early hominin behaviour, especially their subsistence patterns, revealed mainly through taphonomic analyses of archaeofaunal assemblages. Taphonomic research is used to discern which agents (carnivores, humans or both) generate the bone assemblages recovered at archaeological sites. Taphonomic frameworks developed during the last decades show that the only large-sized carnivores in African biomes able to create bone assemblages are leopards and hyenas. A carnivore-made bone assemblage located in the short-grassland ecological unit of the Serengeti (within Olduvai Gorge) was studied. Taphonomic analyses of this assemblage including skeletal part representation, bone density, breakage patterns and anatomical distribution of tooth marks, along with an ecological approach to the prey selection made by large carnivores of the Serengeti, were carried out. The results show that this bone assemblage may be the first lion-accumulated assemblage documented, although other carnivores (namely spotted hyenas) may have also intervened through postdepositional ravaging. This first faunal assemblage potentially created by lions constitutes a new framework for neotaphonomic studies. Since lions may accumulate carcasses under exceptional circumstances, such as those documented at the site reported here, this finding may have important consequences for interpretations of early archaeological and paleontological sites, which provide key information about human evolution. PMID:27144649

Pollen and palynofacies analyses of Paleocene-Eocene Thermal Maximum sediments from the North American continental shelf

NASA Astrophysics Data System (ADS)

Willard, D. A.; Robinson, M. M.; Self-Trail, J. M.; Wandless, G. A.; Sluijs, A.

2014-12-01

Analyses of pollen and palynofacies from Paleocene-Eocene Thermal Maximum (PETM) sediments from three cores collected on the Atlantic Coastal Plain provide insights into the timing of vegetation and hydrologic changes associated with the PETM in eastern North America. The Mattawoman Creek-Billingsley Road (MCBR2), South Dover Bridge (SDB), and Bass River (ODP Site 1074AX) cores were collected at progressively greater distances from the paleoshoreline in continental shelf deposits in Maryland and New Jersey, USA. The PETM carbon isotope excursion (CIE) at each site is accompanied by sharp increases in pollen and spore concentrations, as well as changes in terrestrial palynomorph assemblage composition. In the two sites proximal to the paleoshoreline in Maryland, CIE fern spore abundance was two- to three times greater than in pre-CIE assemblages. At the distal site at Bass River, fern spores are present in CIE sediments and absent in pre-CIE sediments. Angiosperm pollen is most common in CIE sediments at all three sites. Palynofacies analyses, which quantify contributions of organic material from marine and non-marine sources, indicate that terrestrial influx increased sharply at the CIE onset. This observation is consistent with seasonally increased runoff from the continent.

Evolutionary dynamics at high latitudes: speciation and extinction in polar marine faunas

PubMed Central

Clarke, Andrew; Crame, J. Alistair

2010-01-01

Ecologists have long been fascinated by the flora and fauna of extreme environments. Physiological studies have revealed the extent to which lifestyle is constrained by low temperature but there is as yet no consensus on why the diversity of polar assemblages is so much lower than many tropical assemblages. The evolution of marine faunas at high latitudes has been influenced strongly by oceanic cooling during the Cenozoic and the associated onset of continental glaciations. Glaciation eradicated many shallow-water habitats, especially in the Southern Hemisphere, and the cooling has led to widespread extinction in some groups. While environmental conditions at glacial maxima would have been very different from those existing today, fossil evidence indicates that some lineages extend back well into the Cenozoic. Oscillations of the ice-sheet on Milankovitch frequencies will have periodically eradicated and exposed continental shelf habitat, and a full understanding of evolutionary dynamics at high latitude requires better knowledge of the links between the faunas of the shelf, slope and deep-sea. Molecular techniques to produce phylogenies, coupled with further palaeontological work to root these phylogenies in time, will be essential to further progress. PMID:20980314

Hydrothermal alteration of a chevkinite-group mineral to a bastnäsite-(Ce)-ilmenite- columbite-(Fe) assemblage: interaction with a F-, CO2-rich fluid

NASA Astrophysics Data System (ADS)

Macdonald, Ray; Bagiński, Bogusław; Kartashov, Pavel M.; Zozulya, Dmitry; Dzierżanowski, Piotr; Jokubauskas, Petras

2015-12-01

The results are presented of a textural and mineral chemical study of a previously undescribed type of hydrothermal alteration of chevkinite-(Ce) which occurs in a syenitic pegmatite from the Vishnevye Mountains, Urals Region, Russia. The progressive alteration of the chevkinite to a bastnäsite-(Ce)-ilmenite-columbite-(Fe) assemblage through a series of texturally complex intermediate stages is described and electron microprobe analyses are given of all the major phases. Unusual Nb ± Th-rich phases formed late in the alteration sequence provide evidence of local Nb mobility. The main compositional fluxes are traced, especially of the REE, HFSE, Th and U. It appears that almost all elements, with the exception of La, released from the chevkinite-(Ce) were reincorporated into later phases, such that they did not leave the alteration crust in significant amounts. The hydrothermal fluids are inferred to have been F- and CO2-rich, with variable levels of Ca activity, and with fO2 mainly between the nickel-nickel oxide and magnetite-hematite buffers. This occurrence represents a new paragenesis for a columbite-group mineral.

Seasonal Dynamics of Fish Assemblages on Breakwaters and Natural Rocky Reefs in a Temperate Estuary: Consistent Assemblage Differences Driven by Sub-Adults

PubMed Central

Fowler, Ashley M.; Booth, David J.

2013-01-01

Development of infrastructure around cities is rapidly increasing the amount of artificial substrate (termed artificial reef, ‘AR’) in coastal marine habitats. However, effects of ARs on marine communities remain unknown, because it is unclear whether ARs can maintain similar communities to natural reefs. We investigated whether well-established (> 30 years old) breakwaters could consistently approximate fish assemblages on interspersed rocky reefs in a temperate estuary over 6 consecutive seasons using regular visual surveys between June 2009 (winter) and November 2010 (spring). We examined whether assemblage differences between reef types were driven by differences in juvenile recruitment, or were related to differences in older life-stages. Assemblages on both reef types were dominated by juveniles (61% of individuals) and sub-adults (34% of individuals). Seasonal fluctuations in assemblage parameters (species richness, diversity, sub-adult abundance) were similar between reef types, and levels of species diversity and assemblage composition were generally comparable. However, abundance and species richness were consistently higher (1.9-7.6 and 1.3-2.6 times, respectively) on breakwaters. These assemblage differences could not be explained by differences in juvenile recruitment, with seasonal patterns of recruitment and juvenile species found to be similar between reef types. In contrast, abundances of sub-adults were consistently higher (1.1-12 times) at breakwaters, and assemblage differences appeared to be driven by this life-stage. Our results indicate that breakwaters in temperate estuaries are capable of supporting abundant and diverse fish assemblages with similar recruitment process to natural reefs. However, breakwaters may not approximate all aspects of natural assemblage structure, with differences maintained by a single-life stage in some cases. PMID:24086634

Temporal changes in aquatic-invertebrate and fish assemblages in streams of the north-central and northeastern U.S.

USGS Publications Warehouse

Kennen, Jonathan G.; Sullivan, Daniel J.; May, Jason T.; Bell, Amanda H.; Beaulieu, Karen M.; Rice, Donald E.

2012-01-01

Many management agencies seek to evaluate temporal changes in aquatic assemblages at monitoring sites, but few have sites with ecological time series that are long enough for this purpose. Trends in aquatic-invertebrate and fish assemblage composition were assessed at 27 long-term monitoring sites in the north-central and northeastern United States. Temporal changes were identified using serial trend analysis. Sites with significant serial trends were further evaluated by relating explanatory environmental variables (e.g., streamflow, habitat, and water chemistry) to changes in assemblage composition. Significant trends were found at 19 of 27 study sites; however, differences in the sensitivity of the aquatic fauna to environmental stressors were identified. For example, significant trends in fish assemblages were found at more sites (15 of 27) than for aquatic-invertebrate assemblages (10 of 27 sites). In addition, trends in the invertebrate assemblage were most often explained by changes in streamflow processes (e.g., duration and magnitude of low- and high-flows, streamflow variability, and annual rates of change), whereas trends in the fish assemblage were more related to changes in water chemistry. Results illustrate the value of long-term monitoring for the purpose of assessing temporal trends in aquatic assemblages. The ability to detect trends in assemblage composition and to attribute these changes to environmental factors is necessary to understand mechanistic pathways and to further our understanding of how incremental anthropogenic alterations modify aquatic assemblages over time. Finally, this study's approach to trends analysis can be used to better inform the design of monitoring programs as well as support the ongoing management needs of stakeholders, water-resource agencies, and policy makers.

Functional and Taxonomic Differentiation of Macrophyte Assemblages Across the Yangtze River Floodplain Under Human Impacts

PubMed Central

Zhang, Min; García Molinos, Jorge; Zhang, Xiaolin; Xu, Jun

2018-01-01

Human activities and the consequent extirpations of species have been changing the composition of species assemblages worldwide. These anthropogenic impacts alter not only the richness of assemblages but also the biological dissimilarity among them. One of the main gaps in the assessment of biodiversity change in freshwater ecosystems is our limited understanding regarding how taxonomic and functional facets of macrophyte assemblages respond to human impacts on regional scales. Here, we assess the temporal (before 1970s against after 2000s) changes in taxonomic and functional richness and compositional dissimilarities, partitioned into its turnover and nestedness components, of freshwater macrophyte assemblages across the floodplain lakes of the Yangtze River in China. We found that functional and taxonomic assemblage differentiation occurred simultaneously under increasing human impact, concomitant to a general decrease in functional and taxonomic richness. However, this effect weakened when the historical level of taxonomic dissimilarity among assemblages was high. Macrophyte species with large dispersal range and submersed life form were significantly more susceptible to extirpation. The impact of human activities on differentiation was complex but habitat loss and fishery intensity were consistently the main drivers of assemblage change in these lakes, whereas water quality (i.e., light pollution and nutrient enrichment) had weaker effects. Further, macrophyte taxonomic and functional differentiation was mainly driven by the nestedness component of dissimilarity, accounting for changes in assemblage composition related to changes in species richness independent of species replacement. This result, markedly different from previous studies on freshwater fish assemblages conducted in these lakes, represents a novel contribution toward achieving a more holistic understanding of how human impacts contribute to shape community assemblages in natural ecosystems. PMID:29636763

High-resolution paleoclimatology of the coastal margin of northernmost California during the past 7,300 years

NASA Astrophysics Data System (ADS)

Barron, J. A.; Heusser, L. E.; Addison, J. A.; Burky, D.; Kusler, J. E.; Finney, B.

2013-12-01

Piston core TN062 0550, located 13 km offshore of Eureka, California (40.866 deg. N, 124.572 deg. W, 550 m water depth), contains a continuous high-resolution climate record of the past 7,300 yr. Deposition occurred at nearly constant sedimentation rates averaging 94 cm/kyr based on 14C AMS dating of planktonic foraminifers. Pollen and marine ecosystem proxies (diatoms, silicoflagellates, wt. percent biogenic silica) studied at 50-70 yr sample resolution show a stepwise development of the climate/ oceanographic system off northernmost California. The relative contributions of Sequoia sempervirens (coastal redwood) pollen, a proxy for coastal fog associated with offshore upwelling, and biogenic silica concentrations (a proxy for siliceous export productivity) increase (two fold and three fold, respectively) in successive steps at ~5,000 yr BP and from ~2,400 to 2,000 yr BP. These increases are interpreted to reflect a progressive intensification of spring upwelling based on modern observations of the California Current system. At 5,000 yr BP diatom assemblages change from an assorted mixture of warm, temperate, and cool-water taxa to a low diversity temperate-oceanic assemblage dominated by Thalassionema spp. At ~2,400 yr BP the diatom assemblage transitions to a mixture of nearshore upwelling taxa and taxa associated with the central North Pacific Gyre. Silicoflagellate assemblages undergo a similar increase in the representation of modern seasonal proxies at ~3,000 yr BP that may reflect intensified ENSO variability. A two-fold increase in the relative contributions of Quercus (oak) and riparian Alnus (alder) pollen between ~3,800 and 2,000 yr BP likely signals a period of enhanced fluvial runoff associated with increased winter precipitation. Given the present day association of the Eel River system with the northwestern half of the western US winter precipitation dipole, these pollen data suggest that the ~3,800 and 2,000 yr interval was dominated by protracted negative Pacific Decadal Oscillation-like (PDO) conditions. The widespread occurrence of drought in the southwestern US between ~3,800 and 2,200 yr BP supports this interpretation.

Mesozoic thermal history and timing of structural events for the Yukon-Tanana Upland, east-central Alaska: 40Ar/39Ar data from metamorphic and plutonic rocks

USGS Publications Warehouse

Dusel-Bacon, C.; Lanphere, M.A.; Sharp, W.D.; Layer, P.W.; Hansen, V.L.

2002-01-01

We present new 40Ar/39Ar ages for hornblende, muscovite, and biotite from metamorphic and plutonic rocks from the Yukon-Tanana Upland, Alaska. Integration of our data with published 40Ar/39Ar, kinematic, and metamorphic pressure (P) and temperature (T) data confirms and refines the complex interaction of metamorphism and tectonism proposed for the region. The oldest metamorphic episode(s) postdates Middle Permian magmatism and predates the intrusion of Late Triassic (215-212 Ma) granitoids into the Fortymile River assemblage (Taylor Mountain assemblage of previous papers). In the eastern Eagle quadrangle, rapid and widespread Early Jurassic cooling is indicated by ???188-186 Ma 40Ar/39Ar plateau ages for hornblende from plutons that intrude the Fortymile River assemblage, and for metamorphic minerals from the Fortymile River assemblage and the structurally underlying Nasina assemblage. We interpret these Early Jurassic ages to represent cooling resulting from northwest-directed contraction that emplaced the Fortymile River assemblage onto the Nasina assemblage to the north as well as the Lake George assemblage to the south. This cooling was the final stage of a continuum of subduction-related contraction that produced crustal thickening, intermediate- to high-P metamorphism within both the Fortymile River assemblage and the structurally underlying Lake George assemblage, and Late Triassic and Early Jurassic plutonism in the Fortymile River and Nasina assemblages. Although a few metamorphic samples from the Lake George assemblage yield Jurassic 40Ar/39Ar cooling ages, most yield Early Cretaceous 40Ar/39Ar ages: hornblende ???135-115 Ma, and muscovite and biotite ???110-108 Ma. We interpret the Early Cretaceous metamorphic cooling, in most areas, to have resulted from regional extension and exhumation of the lower plate, previously tectonically thickened during Early Jurassic and older convergence.

T-XCO2 stability relations and phase equilibria of a calcic carbonate scapolite

USGS Publications Warehouse

Aitken, B.G.

1983-01-01

At a total pressure of 5 kb, calcic, Cl-free scapolite (Me83) is stable relative to plagioclase-bearing assemblages at T ??? 625??C, XCO2 ??? 0.12. With decreasing temperature, scapolite breaks down to plagioclase + calcite. Scapolite is replaced by plagioclase + grossular + cancrinite + CO2 in the presence of H2O-rich fluids. The stable coexistence of scapolite and calcite, an assemblage typical of most natural occurrences of calcic scapolite, is limited by the reaction: scapolite + calcite ??? grossular + cancrinite + CO2, which occurs at 750??C, XCO2 = 0.46; 700??C, XCO2 = 0.33; 650??C, XCO2 = 0.18, for the chosen bulk composition. Generalization of the experimental results to encompass the complete range of fully carbonated scapolite compositions indicates that mizzonite (Me75) has the largest T-XCO2 stability field. For scapolite more calcic than mizzonite, stable growth is restricted to conditions of increasingly higher temperature and XCO2. The experimental results are consistent with various petrologic features of scapolite-bearing rocks, particularly scapolite-clinopyroxene granulites, and indicate that such rocks were formed in the presence of CO2-rich fluids. ?? 1983.

Decomposition of hydroxy amino acids in foraminiferal tests; kinetics, mechanism and geochronological implications

USGS Publications Warehouse

Bada, J.L.; Shou, M.-Y.; Man, E.H.; Schroeder, R.A.

1978-01-01

The diagenesis of the hydroxy amino acids serine and threonine in foraminiferal tests has been investigated. The decomposition pathways of these amino acids are complex; the principal reactions appear to be dehydration, aldol cleavage and decarboxylation. Stereochemical studies indicate that the ??-amino-n-butyric acid (ABA) detected in foraminiferal tests is the end product of threonine dehydration pathway. Decomposition of serine and threonine in foraminiferal tests from two well-dated Caribbean deep-sea cores, P6304-8 and -9, has been found to follow irreversible first-order kinetics. Three empirical equations were derived for the disappearance of serine and threonine and the appearance of ABA. These equations can be used as a new geochronological method for dating foraminiferal tests from other deep-sea sediments. Preliminary results suggest that ages deduced from the ABA kinetics equation are most reliable because "species effect" and contamination problems are not important for this nonbiological amino acid. Because of the variable serine and threonine contents of modern foraminiferal species, it is likely that the accurate age estimates can be obtained from the serine and threonine decomposition equations only if a homogeneous species assemblage or single species sample isolated from mixed natural assemblages is used. ?? 1978.

Elevated land runoff after European settlement perturbs persistent foraminiferal assemblages on the Great Barrier Reef.

PubMed

Uthicke, S; Patel, F; Ditchburn, R

2012-01-01

Coral reefs are under pressure from a variety of human-induced disturbances, but demonstration of ecosystem changes and identification of stressors are often difficult. We tested whether global change or increased agricultural runoff after European settlement of Northeast Australia (ca. 1860) has affected inshore reefs of the Great Barrier Reef. Eleven sediment cores were retrieved from inner reefs, intermediate reefs, and outer-island reefs, and benthic foraminiferal assemblages were analyzed in dated (14C, 210Pb, 137Cs) core sections (N = 82 samples). Data were grouped into six age bands (< 55, 55-150, 150-500, 500-1000, 1000-1500, and > 1500 yr). Principal component analysis and two-factor (Zone and Age) permutational analysis of variance (PERMANOVA) suggested that assemblages from the three zones were significantly different from each other over several millennia, with symbiont-bearing (mixotrophic) species dominating the outer reefs. A significant interaction term indicated that within-zone patterns varied. Assemblages in outer reefs unaffected from increased land runoff were persistent until present times. In both other zones, assemblages were also persistent until 150 yr ago, suggesting that benthic foraminiferal assemblages are naturally highly persistent over long (> 2000 yr) timescales. Assemblages in core sections < 55 yr old from inner reefs were significantly (post hoc t test) different from those older than 150 yr. Similarly, assemblages < 55 yr old from intermediate reefs were significantly different compared to older assemblages. A multivariate regression tree (environmental variables: Zone and Age) explained 56.8% of the variance in foraminiferal assemblages and confirmed patterns identified by PERMANOVA. With some exceptions, changes on the inner and intermediate reefs were consistent with a model predicting that increased nutrients and higher turbidity enhance relative abundance of heterotrophic species. Given that assemblages did not change in outer-island reefs (not impacted by runoff) we argue that changes in assemblages due to global change can be rejected as an explanation. Thus, the findings are more consistent with the hypothesis that agricultural runoff since European settlement altered foraminiferal assemblages than with the hypothesis that global forcing caused changes.

The Effects of Sub-Regional Climate Velocity on the Distribution and Spatial Extent of Marine Species Assemblages.

PubMed

Kleisner, Kristin M; Fogarty, Michael J; McGee, Sally; Barnett, Analie; Fratantoni, Paula; Greene, Jennifer; Hare, Jonathan A; Lucey, Sean M; McGuire, Christopher; Odell, Jay; Saba, Vincent S; Smith, Laurel; Weaver, Katherine J; Pinsky, Malin L

2016-01-01

Many studies illustrate variable patterns in individual species distribution shifts in response to changing temperature. However, an assemblage, a group of species that shares a common environmental niche, will likely exhibit similar responses to climate changes, and these community-level responses may have significant implications for ecosystem function. Therefore, we examine the relationship between observed shifts of species in assemblages and regional climate velocity (i.e., the rate and direction of change of temperature isotherms). The assemblages are defined in two sub-regions of the U.S. Northeast Shelf that have heterogeneous oceanography and bathymetry using four decades of bottom trawl survey data and we explore temporal changes in distribution, spatial range extent, thermal habitat area, and biomass, within assemblages. These sub-regional analyses allow the dissection of the relative roles of regional climate velocity and local physiography in shaping observed distribution shifts. We find that assemblages of species associated with shallower, warmer waters tend to shift west-southwest and to shallower waters over time, possibly towards cooler temperatures in the semi-enclosed Gulf of Maine, while species assemblages associated with relatively cooler and deeper waters shift deeper, but with little latitudinal change. Conversely, species assemblages associated with warmer and shallower water on the broad, shallow continental shelf from the Mid-Atlantic Bight to Georges Bank shift strongly northeast along latitudinal gradients with little change in depth. Shifts in depth among the southern species associated with deeper and cooler waters are more variable, although predominantly shifts are toward deeper waters. In addition, spatial expansion and contraction of species assemblages in each region corresponds to the area of suitable thermal habitat, but is inversely related to assemblage biomass. This suggests that assemblage distribution shifts in conjunction with expansion or contraction of thermal habitat acts to compress or stretch marine species assemblages, which may respectively amplify or dilute species interactions to an extent that is rarely considered. Overall, regional differences in climate change effects on the movement and extent of species assemblages hold important implications for management, mitigation, and adaptation on the U.S. Northeast Shelf.

The Effects of Sub-Regional Climate Velocity on the Distribution and Spatial Extent of Marine Species Assemblages

PubMed Central

Kleisner, Kristin M.; Fogarty, Michael J.; McGee, Sally; Barnett, Analie; Fratantoni, Paula; Greene, Jennifer; Hare, Jonathan A.; Lucey, Sean M.; McGuire, Christopher; Odell, Jay; Saba, Vincent S.; Smith, Laurel; Weaver, Katherine J.; Pinsky, Malin L.

2016-01-01

Many studies illustrate variable patterns in individual species distribution shifts in response to changing temperature. However, an assemblage, a group of species that shares a common environmental niche, will likely exhibit similar responses to climate changes, and these community-level responses may have significant implications for ecosystem function. Therefore, we examine the relationship between observed shifts of species in assemblages and regional climate velocity (i.e., the rate and direction of change of temperature isotherms). The assemblages are defined in two sub-regions of the U.S. Northeast Shelf that have heterogeneous oceanography and bathymetry using four decades of bottom trawl survey data and we explore temporal changes in distribution, spatial range extent, thermal habitat area, and biomass, within assemblages. These sub-regional analyses allow the dissection of the relative roles of regional climate velocity and local physiography in shaping observed distribution shifts. We find that assemblages of species associated with shallower, warmer waters tend to shift west-southwest and to shallower waters over time, possibly towards cooler temperatures in the semi-enclosed Gulf of Maine, while species assemblages associated with relatively cooler and deeper waters shift deeper, but with little latitudinal change. Conversely, species assemblages associated with warmer and shallower water on the broad, shallow continental shelf from the Mid-Atlantic Bight to Georges Bank shift strongly northeast along latitudinal gradients with little change in depth. Shifts in depth among the southern species associated with deeper and cooler waters are more variable, although predominantly shifts are toward deeper waters. In addition, spatial expansion and contraction of species assemblages in each region corresponds to the area of suitable thermal habitat, but is inversely related to assemblage biomass. This suggests that assemblage distribution shifts in conjunction with expansion or contraction of thermal habitat acts to compress or stretch marine species assemblages, which may respectively amplify or dilute species interactions to an extent that is rarely considered. Overall, regional differences in climate change effects on the movement and extent of species assemblages hold important implications for management, mitigation, and adaptation on the U.S. Northeast Shelf. PMID:26901435

Coupled biotic-abiotic oxidation of organic matter by biogenic MnO_{2}

NASA Astrophysics Data System (ADS)

Gonzalez, Julia; Peña, Jasquelin

2016-04-01

Some reactive soil minerals are strongly implicated in stabilising organic matter. However, others can play an active role in the oxidation of organic molecules. In natural systems, layer-type manganese oxide minerals (MnO2) typically occur as biomineral assemblages consisting of mineral particles and microbial biomass. Both the mineral and biological fractions of the assemblage can be powerful oxidants of organic C. The biological compartment relies on a set of enzymes to drive oxidative transformations of reduced C-substrates, whereas MnO2 minerals are strong, less specific abiotic oxidants that are assumed to rely on interfacial interactions between C-substrates and the mineral surface. This project aims to understand the coupling between microbial C mineralization and abiotic C oxidation mediated by MnO2 in bacterial-MnO2 assemblages. Specifically, under conditions of high C turnover, microbial respiration can significantly alter local pH, dissolved oxygen and pool of available reductants, which may modify rates and mechanism of C oxidation by biotic and abiotic components. We first investigated changes in the solution chemistry of Pseudomonas putida suspensions exposed to varying concentrations of glucose, chosen to represent readily bioavailable substrates in soils. Glucose concentrations tested ranged between 0 and 5.5mM and changes in pH, dissolved oxygen and dissolved organic and inorganic carbon were tracked over 48h. We then combined literature review and wet-chemical experiments to compile the pH dependence of rates of organic substrate oxidation by MnO2, including glucose. Our results demonstrate a strong pH dependence for these abiotic reactions. In assemblages of P. putida - MnO2, kinetic limitations for abiotic C oxidation by MnO2 are overcome by changes in biogeochemical conditions that result from bacterial C metabolism. When extrapolated to a soil solution confronted to an input of fresh dissolved organic matter, bacterial C metabolism of the labile fraction may lower solution pH into a regime that favours abiotic oxidation of recalcitrant C by MnO2. This project demonstrates that the co-occurrence of mineral particles with metabolically active cells provides a direct link between the C and Mn cycles.

Reaction chemistry in rechargeable Li-O2 batteries.

PubMed

Lim, Hee-Dae; Lee, Byungju; Bae, Youngjoon; Park, Hyeokjun; Ko, Youngmin; Kim, Haegyeom; Kim, Jinsoo; Kang, Kisuk

2017-05-22

The seemingly simple reaction of Li-O 2 batteries involving lithium and oxygen makes this chemistry attractive for high-energy-density storage systems; however, achieving this reaction in practical rechargeable Li-O 2 batteries has proven difficult. The reaction paths leading to the final Li 2 O 2 discharge products can be greatly affected by the operating conditions or environment, which often results in major side reactions. Recent research findings have begun to reveal how the reaction paths may be affected by the surrounding conditions and to uncover the factors contributing to the difficulty in achieving the reactions of lithium and oxygen. This progress report describes the current state of understanding of the electrode reaction mechanisms in Li-O 2 batteries; the factors that affect reaction pathways; and the effect of cell components such as solvents, salts, additives, and catalysts on the discharge product and its decomposition during charging. This comprehensive review of the recent progress in understanding the reaction chemistry of the Li-O 2 system will serve as guidelines for future research and aid in the development of reliable high-energy-density rechargeable Li-O 2 batteries.

Permo-Triassic radiolaria from the Semanggol Formation, northwest Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Jasin, Basir

1997-02-01

A total of 32 species of radiolaria were identified from 20 chert samples at eight localities of the Semanggol Formation in north and south Kedah. Three assemblages of Radiolaria were recognised representing the Early Permian Pseudoalbaillella scalprata m. rhombothoracata. Late Permian Albaillella levis, and Middle Triassic Triassocampe deweveri Assemblage-Zone. The Pseudoalbaillella scalprata m. rhombothoracata Assemblage-Zone is discovered from Bukit Kampung Yoi and Bukit Larek, north Kedah. The Albaillella levis Assemblage-Zone is recorded from Bukit Tok Bertanduk, north Kedah and Merbau Palas, south Kedah. The Triassocampe deweveri Assemblage-Zone is found from the Lanjut Malau area, north Kedah. The radiolarian assemblages indicate that the age of the chert sequence in the Semanggol Formation ranges from Early permian to Middle Triassic.

Theoretical studies on bimolecular reaction dynamics

PubMed Central

Clary, David C.

2008-01-01

This perspective discusses progress in the theory of bimolecular reaction dynamics in the gas phase. The examples selected show that definitive quantum dynamical computations are providing insights into the detailed mechanisms of chemical reactions. PMID:18626015

Albite dissociation reaction in the Northwest Africa 8275 shocked LL chondrite and implications for its impact history

NASA Astrophysics Data System (ADS)

Miyahara, Masaaki; Ohtani, Eiji; Yamaguchi, Akira

2017-11-01

An impact event recorded in the Northwest Africa (NWA) 8275 LL7 ordinary chondrite was investigated based on high-pressure mineralogy of pervasive shock-melt veins present in the rock. NWA 8275 consists of olivine, low-Ca pyroxene, plagioclase (albite-oligoclase composition), and minor high-Ca pyroxene, K-feldspar, phosphate minerals, metallic Fe-Ni and iron sulfide. Plagioclase and K-feldspar grains near the shock-melt veins have become amorphous, although no high-pressure polymorphs of olivine and pyroxene were identified in or adjacent the shock-melt veins. Raman spectroscopy and focused ion beam (FIB)-assisted transmission electron microscopy (TEM) observations reveal that plagioclase entrained around the center portion of the shock-melt veins has dissociated into a jadeite + coesite assemblage. Alternately stacked jadeite and coesite crystals occur in the original plagioclase. On approaching the host rock/shock-melt vein, only jadeite is present. Based on the high-pressure polymorph assemblage, the shock pressure and temperature conditions recorded in the shock-melt veins are ∼3-12 GPa and ∼1973-2373 K, respectively. Following a Rankine-Hugoniot relationship, the impact velocity was at least ∼0.45-1.54 km/s. The duration of high-pressure and high-temperature (HPHT) conditions required for the albite dissociation reaction is estimated a maximum of ∼4-5 s using the phase transition rate of albite, implying that a body of up to ∼9-12 km across collided with the parent body of NWA 8275. The coexistence of jadeite and coesite, the latter of which rarely accompanies jadeite in shocked ordinary chondrites, as a dissociation product of albite requires relatively long duration HPHT conditions. Thus, the impact event recorded in NWA 8275 was likely caused by a larger-than-typical projectile.

The SALT NORM : a quantitative chemical-mineralogical characterization of natural waters

USGS Publications Warehouse

Bodine, Marc W.; Jones, Blair F.

1986-01-01

The new computer program SNORM calculates the salt norm from the chemical composition of a natural water. The salt norm is the quantitative ideal equilibrium assemblage that would crystallize if the water evaporated to dryness at 25 C and 1 bar pressure under atmospheric partial pressure of CO2. SNORM proportions solute concentrations to achieve charge balance. It quantitatively distributes the 18 acceptable solutes into normative salts that are assigned from 63 possible normative salts to allow only stable associations based on the Gibbs Phase Rule, available free energy values, and observed low-temperature mineral associations. Although most natural water compositions represent multiple solute origins, results from SNORM identify three major categories: meteoric or weathering waters that are characterized by normative alkali-bearing sulfate and carbonate salts: connate marine-like waters that are chloride-rich with a halite-bischofite-carnallite-kieserite-anhydrite association; and diagenetic waters that are frequently of marine origin but yield normative salts, such as Ca-bearing chlorides (antarcticite and tachyhydrite) and sylvite, which suggest solute alteration by secondary mineral reactions. The solute source or reaction process within each of the above categories is commonly indicated by the presence or absence of diagnostic normative salts and their relative abundance in the normative salt assemblage. For example, salt norms: (1) may identify lithologic source; (2) may identify the relative roles of carbonic and sulfuric acid hydrolysis in the evolution of weathering waters; (3) may identify the origin of connate water from normal marine, hypersaline, or evaporite salt resolution processes; and (4) may distinguish between dolomitization and silicate hydrolysis or exchange for the origin of diagenetic waters. (Author 's abstract)

CSpace: an integrated workplace for the graphical and algebraic analysis of phase assemblages on 32-bit wintel platforms

NASA Astrophysics Data System (ADS)

Torres-Roldan, Rafael L.; Garcia-Casco, Antonio; Garcia-Sanchez, Pedro A.

2000-08-01

CSpace is a program for the graphical and algebraic analysis of composition relations within chemical systems. The program is particularly suited to the needs of petrologists, but could also prove useful for mineralogists, geochemists and other environmental scientists. A few examples of what can be accomplished with CSpace are the mapping of compositions into some desired set of system/phase components, the estimation of reaction/mixing coefficients and assessment of phase-rule compatibility relations within or between complex mineral assemblages. The program also allows dynamic inspection of compositional relations by means of barycentric plots. CSpace provides an integrated workplace for data management, manipulation and plotting. Data management is done through a built-in spreadsheet-like editor, which also acts as a data repository for the graphical and algebraic procedures. Algebraic capabilities are provided by a mapping engine and a matrix analysis tool, both of which are based on singular-value decomposition. The mapping engine uses a general approach to linear mapping, capable of handling determined, underdetermined and overdetermined problems. The matrix analysis tool is implemented as a task "wizard" that guides the user through a number of steps to perform matrix approximation (finding nearest rank-deficient models of an input composition matrix), and inspection of null-reaction space relationships (i.e. of implicit linear relations among the elements of the composition matrix). Graphical capabilities are provided by a graph engine that directly links with the contents of the data editor. The graph engine can generate sophisticated 2-D ternary (triangular) and 3D quaternary (tetrahedral) barycentric plots and includes features such as interactive re-sizing and rotation, on-the-fly coordinate scaling and support for automated drawing of tie lines.

Dehydration melting studies in a 'Kyanite terrain', Manali, NW Himalayas

NASA Astrophysics Data System (ADS)

Verma, Pramod; Sengupta, Susmita; Chaddha, D. K.; Pant, N. C.

2005-05-01

The Beas valley section in Himachal Pradesh is characterized by the presence of kyanite as the alumino-silicate phase and a small extent of Neogene quartzo-feldspathic intrusives. The present paper explores the reasons for the lack of extensive granite occurrences through a detailed petrologic study on samples of a drill core (200 m, inclined 60° due ESE) close to Manali, the expected highest point in P-T space in this section. The highest assemblage encountered is quartz+muscovite+biotite+garnet+plagioclase+kyanite±apatite±zircon±tourmaline±ilmenite±rutile. The chemical analyses of mineral grains were carried out on a CAMECA SX51 EPMA. The following two reactions that constrain the P-T regime of the area have been established. St+Qtz→Alm+Ky+HO Bio+Plg+Qtz+Ksp→Gar+Ky+Liq. Our result, P=8.25±1 kbar, T=638±4 °C, falls in a region between curves representing aO=1.0 and aO=0.7 of the fluid in Thompson [Trans. Royal Soc. Edinb. 87 (1996) 1] diagram. The P-T estimate falls in the kyanite field and is very close to the mica dehydration-melting curve. The studies indicate that the core samples are a part of progressive metamorphic sequence. It implies that the absence of sillimanite and large scale melting is perhaps chance brought about by thrusting and erosion. The present section experienced single stage dehydration melting.

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna.

PubMed

Malatesta, Luca; Tardella, Federico Maria; Piermarteri, Karina; Catorci, Andrea

2016-01-01

Facilitation processes constitute basic elements of vegetation dynamics in harsh systems. Recent studies in tropical alpine environments demonstrated how pioneer plant species defined as "ecosystem engineers" are capable of enhancing landscape-level richness by adding new species to the community through the modification of microhabitats, and also provided hints about the alternation of different ecosystem engineers over time. Nevertheless, most of the existing works analysed different ecosystem engineers separately, without considering the interaction of different ecosystem engineers. Focusing on the altitudinal limit of Peruvian Dry Puna vegetation, we hypothesized that positive interactions structure plant communities by facilitation cascades involving different ecosystem engineers, determining the evolution of the microhabitat patches in terms of abiotic resources and beneficiary species hosted. To analyze successional mechanisms, we used a "space-for-time" substitution to account for changes over time, and analyzed data on soil texture, composition, and temperature, facilitated species and their interaction with nurse species, and surface area of engineered patches by means of chemical analyses, indicator species analysis, and rarefaction curves. A successional process, resulting from the dynamic interaction of different ecosystem engineers, which determined a progressive amelioration of soil conditions (e.g. nitrogen and organic matter content, and temperature), was the main driver of species assemblage at the community scale, enhancing species richness. Cushion plants act as pioneers, by starting the successional processes that continue with shrubs and tussocks. Tussock grasses have sometimes been found to be capable of creating microhabitat patches independently. The dynamics of species assemblage seem to follow the nested assemblage mechanism, in which the first foundation species to colonize a habitat provides a novel substrate for colonization by other foundation species through a facilitation cascade process.

Preliminary palynological zonation of the Chinle formation, southwestern U.S.A., and its correlation to the Newark supergroup (eastern U.S.A.)

USGS Publications Warehouse

Litwin, R.J.; Traverse, A.; Ash, S.R.

1991-01-01

Three informal palynological assemblage zones can be distinguished in samples from Chinle Formation outcrops in Utah, Arizona and New Mexico. The oldest zone (zone I) is in the Temple Mountain Member in southeastern Utah; the middle zone (zone II) is in the Shinarump, Moss Back, Monitor Butte and (lower part of the) Petrified Forest Members (Utah, Arizona and New Mexico); the youngest zone (zone III) is in the upper Petrified Forest Member and silstone member in Arizona and Utah and the silstone member in northcentral New Mexico. Present palynological evidence suggests that Chinle deposition on the Colorado Plateau began locally in late Carnian time and continued at least into the early part of Norian time of the Late Triassic period. Because the upper boundary of the Chinle Formation is an unconformity and the overlying formations are palynologically barren, the length of time represented by this stratigraphic hiatus is not known with certainty. Current palynological evidence suggests, however, that the unconformity at the top of the Chinle cannot be older than early Norian nor younger than Hettangian. Zones I, II and III can now be recognized in the palynomorph assemblage sequences from the Eastern Mesozoic basins, which modifies earlier palynological zonations for the lower portions of the Newark Supergroup. This is based on our identification of palynomorphs not previously known from portions of the Newark Supergroup and the discovery that specific biomarker taxa combinations are the same for both the western and eastern palynomorph sequences. At present palynomorph assemblages from the Chinle Formation and Newark Supergroup compare more closely for zones II and III than they do for zone I, but research is still in progress. ?? 1991.

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna

PubMed Central

2016-01-01

Facilitation processes constitute basic elements of vegetation dynamics in harsh systems. Recent studies in tropical alpine environments demonstrated how pioneer plant species defined as “ecosystem engineers” are capable of enhancing landscape-level richness by adding new species to the community through the modification of microhabitats, and also provided hints about the alternation of different ecosystem engineers over time. Nevertheless, most of the existing works analysed different ecosystem engineers separately, without considering the interaction of different ecosystem engineers. Focusing on the altitudinal limit of Peruvian Dry Puna vegetation, we hypothesized that positive interactions structure plant communities by facilitation cascades involving different ecosystem engineers, determining the evolution of the microhabitat patches in terms of abiotic resources and beneficiary species hosted. To analyze successional mechanisms, we used a “space-for-time” substitution to account for changes over time, and analyzed data on soil texture, composition, and temperature, facilitated species and their interaction with nurse species, and surface area of engineered patches by means of chemical analyses, indicator species analysis, and rarefaction curves. A successional process, resulting from the dynamic interaction of different ecosystem engineers, which determined a progressive amelioration of soil conditions (e.g. nitrogen and organic matter content, and temperature), was the main driver of species assemblage at the community scale, enhancing species richness. Cushion plants act as pioneers, by starting the successional processes that continue with shrubs and tussocks. Tussock grasses have sometimes been found to be capable of creating microhabitat patches independently. The dynamics of species assemblage seem to follow the nested assemblage mechanism, in which the first foundation species to colonize a habitat provides a novel substrate for colonization by other foundation species through a facilitation cascade process. PMID:27902757

Fish Distribution and Habitat Complexity on Banks of the Strait of Sicily (Central Mediterranean Sea) from Remotely-Operated Vehicle (ROV) Explorations

PubMed Central

Esposito, Valentina; Battaglia, Pietro; Altobelli, Chiara; Perzia, Patrizia; Romeo, Teresa; Canese, Simonepietro; Andaloro, Franco

2016-01-01

The Strait of Sicily was recognized internationally as an “Ecologically or Biologically Significant Area” by the Contracting Parties of the Convention on Biological Diversity in 2014. However, basic aspects of its fish diversity are still unknown and most of the information comes from traditional trawl surveys. This paper provides the first detailed description, using a Remotely Operated Vehicle (ROV), of the composition and depth distribution of the demersal fish assemblages found on banks of the Strait of Sicily and the related habitat complexity from 35 to 240 m depth. A total of 24 families and 52 fish species were recorded and depth was consistently associated with a significant proportion of the variation of the fish assemblage. The highest species richness was observed at the shallowest depth layer (0–50 m) and significantly decreased, remaining almost constant, in deeper layers. Similarly the highest abundance was recorded at 0–50 m, where C. julis represented the most abundant species, and decreased progressively throughout the whole depth gradient. Although the factor habitat complexity explained only a small proportion of the fish assemblage variation, significant differences among different degrees of habitat complexity were observed, together with a general positive trend for species richness and abundance with increasing habitat complexity. The ROV also allowed us to observe some rare or poorly known fish species such as Scorpaenodes arenai, Hyporthodus haifensis, Myliobatis aquila, Gadella maraldi, Epinephelus caninus and Lappanella fasciata. These findings show that banks serve as reservoirs for fish abundance and biodiversity and that immediate environmental conservation and management actions represent a priority not only for Italy but also for other countries which share the same area. PMID:27936221

Strong depth-related zonation of megabenthos on a rocky continental margin (∼700-4000 m) off southern Tasmania, Australia.

PubMed

Thresher, Ronald; Althaus, Franziska; Adkins, Jess; Gowlett-Holmes, Karen; Alderslade, Phil; Dowdney, Jo; Cho, Walter; Gagnon, Alex; Staples, David; McEnnulty, Felicity; Williams, Alan

2014-01-01

Assemblages of megabenthos are structured in seven depth-related zones between ∼700 and 4000 m on the rocky and topographically complex continental margin south of Tasmania, southeastern Australia. These patterns emerge from analysis of imagery and specimen collections taken from a suite of surveys using photographic and in situ sampling by epibenthic sleds, towed video cameras, an autonomous underwater vehicle and a remotely operated vehicle (ROV). Seamount peaks in shallow zones had relatively low biomass and low diversity assemblages, which may be in part natural and in part due to effects of bottom trawl fishing. Species richness was highest at intermediate depths (1000-1300 m) as a result of an extensive coral reef community based on the bioherm-forming scleractinian Solenosmilia variabilis. However, megabenthos abundance peaked in a deeper, low diversity assemblage at 2000-2500 m. The S. variabilis reef and the deep biomass zone were separated by an extensive dead, sub-fossil S. variabilis reef and a relatively low biomass stratum on volcanic rock roughly coincident with the oxygen minimum layer. Below 2400 m, megabenthos was increasingly sparse, though punctuated by occasional small pockets of relatively high diversity and biomass. Nonetheless, megabenthic organisms were observed in the vast majority of photographs on all seabed habitats and to the maximum depths observed--a sandy plain below 3950 m. Taxonomic studies in progress suggest that the observed depth zonation is based in part on changing species mixes with depth, but also an underlying commonality to much of the seamount and rocky substrate biota across all depths. Although the mechanisms supporting the extraordinarily high biomass in 2000-2500 m depths remains obscure, plausible explanations include equatorwards lateral transport of polar production and/or a response to depth-stratified oxygen availability.

Community benthic paleoecology from high-resolution climate records: Mollusca and foraminifera in post-glacial environments of the California margin

NASA Astrophysics Data System (ADS)

Myhre, Sarah E.; Kroeker, Kristy J.; Hill, Tessa M.; Roopnarine, Peter; Kennett, James P.

2017-01-01

Paleoecological reconstructions of past climate are often based on a single taxonomic group with a consistent presence. Less is known about the relationship between multi-taxon community-wide change and climate variability. Here we reconstruct paleoecological change in a Late Quaternary (16.1-3.4 ka) sediment core from the California margin (418 m below sea level) of Santa Barbara Basin (SBB), USA, using Mollusca (Animalia) and Foraminifera (Rhizaria) microfossils. Building upon previous investigations, we use multivariate ordination and cluster analyses to interpret community-scale changes in these distinctly different taxonomic groups across discrete climate episodes. The strongest differences between seafloor biological communities occurred between glacial (prior to Termination IA, 14.7 ka) and interglacial climate episodes. Holocene communities were well partitioned, indicating that sub-millennial oceanographic variability was recorded by these microfossils. We document strong evidence of chemosynthetic trophic webs and sulfidic environments (from gastropod Alia permodesta and bivalve Lucinoma aequizonata), which characterized restricted intervals previously interpreted as well oxygenated (such as the Pre-Bølling Warming). Mollusc records indicate first-order trophic energetic shifts between detrital and chemosynthetically-fixed carbon. Molluscs associated with widely different physiological preferences occur here within single, decadal intervals of sediment, and as such mollusc assemblages may reflect significant inter-decadal oceanographic variability. Foraminifera assemblages provide exceptional records of the sequential, chronological progression of the deglacial climatic and oceanographic events, whereas mollusc assemblages reflect non-chronological similarities in reoccurring communities. Foraminifera taxa that drive community similarity here are also independently recognized as marker species for seafloor hypoxia regimes, which provides support for the idea that oxygenation change is a principal driver of seafloor environmental variability.

A new pterosaur tracksite from the Jurassic Summerville formation, near Ferron, Utah

USGS Publications Warehouse

Mickelson, Debra L.; Lockley, Martin G.; Bishop, John; Kirkland, James I.

2003-01-01

Pterosaur tracks (cf. Pteraichnus) from the Summerville Formation of the Ferron area of central Utah add to the growing record of Pteraichnus tracksites in the Late Jurassic Summerville Formation and time-equivalent, or near time-equivalent, deposits. The site is typical in revealing high pterosaur track densities, but low ichnodiversity suggesting congregations or “flocks” of many individuals. Footprint length varies from 2.0 to 7.0 cms. The ratio of well-preserved pes:manus tracks is about 1:3.4. This reflects a bias in favor of preservation of manus tracks due to the greater weight-bearing role of the front limbs, as noted in other pterosaur track assemblages. The sample also reveals a number of well-preserved trackways including one suggestive of pes-only progression that might be associated with take off or landing, and another that shows pronounced lengthening of stride indicating acceleration.One well-preserved medium-sized theropod trackway (Therangospodus) and other larger theropod track casts (cf. Megalosauripus) are associated with what otherwise appears to be a nearly monospecific pterosaur track assemblage. However, traces of a fifth pes digit suggest some tracks are of rhamphorynchoid rather than pterodactyloid origin, as usually inferred for Pteraichnus. The tracks occur at several horizons in a thin stratigraphic interval of ripple marked sandstones and siltstones. Overall the assemblage is similar to others found in the same time interval in the Western Interior from central and eastern Utah through central and southern Wyoming, Colorado, northeastern Arizona, and western Oklahoma. This vast “Pteraichnusichnofacies,” with associated saurischian tracks, remains the only ichnological evidence of pre-Cretaceous pterosaurs in North America and sheds important light on the vertebrate ecology of the Summerville Formation and contiguous deposits.

40Ar/39Ar thermochronology of mesoproterozoic metamorphism in the Colorado Front Range

USGS Publications Warehouse

Shaw, C.A.; Snee, L.W.; Selverstone, J.; Reed, J.C.

1999-01-01

A low-pressure metamorphic episode in the Colorado Front Range has been identified by the presence of staurolite, andalusite, cordierite, and garnet porphyroblasts overprinting earlier assemblages. The overprinting assemblages and reaction textures are most consistent with porphyroblast growth on a prograde metamorphic path with peak temperatures exceeding ~525??C. Twenty-eight 40Ar/39Ar dates on hornblende, muscovite, biotite, and microcline were used to infer the age and thermal conditions of metamorphism. Muscovite and biotite 40Ar/39Ar ages fall mainly in the interval 1400-1340 Ma, consistent with cooling through the closure temperature interval of micas (~400??-300??C) after about 1400 Ma. In contrast, hornblende apparent ages (T(c)~500??-550??C) between 1600 and 1390 Ma reflect variable retention of radiogenic argon. Forward modeling of argon diffusion shows that the distribution of hornblende and mica ages is consistent with the partial resetting of argon systematics ca. 1400 Ma by a thermal pulse reaching maximum temperatures around 550??C and decaying within <20 m.yr. These temperatures match the conditions inferred from the overprinting assemblage; thus, muscovite and biotite ages are interpreted to date the cooling phase of this metamorphic event. This late metamorphism is broadly coeval with the intrusion of ca. 1400-Ma granitic plutons in the study area and throughout the southwestern United States. However, thermal effects are observed far from pluton margins, suggesting pervasive, regional crustal heating rather than restricted contact metamorphism. Our results suggest that ca. 1400-Ma metamorphism and plutonism are manifestations of a regional thermal episode that both partially melted the lower crust and pervasively metamorphosed middle crustal rocks.

Ionospheric chemistry. [minor neutrals and ionized constituents of thermosphere

NASA Technical Reports Server (NTRS)

Torr, D. G.

1979-01-01

This report deals primarily with progress in the chemistry of minor neutrals and ionized constituents of the thermosphere. Significant progress was made over the last few years in quantitative studies of many chemical processes. This success was primarily due to the advent of multiparameter multisatellite programs which permitted accurate simultaneous measurements to be made of many important parameters. In many cases studies of chemical reactions were made with laboratory-like precision. Rate coefficients have been derived as functions of temperature for a number of important reactions. New information has been acquired on nearly every major process which occurs in the thermosphere, including the recombination rates of all major molecular ions, charge transfer reactions, ion atom interchange reactions, and reactions of neutral and ionized metastable atoms and molecules.

Diagenetic effects on magnetic minerals in a Holocene lacustrine sediment core from Huguangyan maar lake, southeast China

NASA Astrophysics Data System (ADS)

Wu, Xudong; Wang, Yong; Bian, Liu; Shen, Ji

2016-09-01

Post-depositional reductive diagenesis usually results in partial or entire cleansing of the pristine palaeomagnetic signal, therefore, its intensity is important to be assessed for sediments that are in the purpose of retrieving palaeomagnetic information. Grain size, rock magnetic and geochemical studies on the entire core, along with scanning electron microscope observations and X-ray diffraction analyses for representative samples were carried out on a Holocene sediment core retrieved from the deep water part of Huguangyan maar lake (HGY), southeast China. The pristine magnetic mineral assemblage of the studied core is domianted by superparamagnetic (SP) and stable single domain titanomagnetite, and high coercivity minerals are not detectable. Based on down-core variations of the average grain size (MZ), total organic carbon (TOC), detrital elements (Al, Ti, Fe and Mn) and the concentration and mineralogy of magnetic minerals, the studied core could be divided into three subsections. The uppermost subsection is the least affected by diagenesis, with detrital titanomagnetite as the dominant magnetic mineral. This is owing to low TOC contents, but high detrital input generated by weak Asian summer monsoon intensity during the late Holocene. The intermediate subsection shows down-core progressively enhanced dissolution of detrital titanomagnetite, and concomitant formation of authigenic pyrite and siderite, which indicates down-core progressively enhanced diagenesis generated by down-core progressive increasing TOC content, but decreasing detrital input as the result of down-core progressively strengthened Asian summer monsoon intensity. The pristine magnetic mineral assemblage has been profoundly modified in the lowermost subsection. At certain positions of the lowermost subsection, detrital titanomagnetite has been even completely dissolved via diagenesis, giving place to authigenic pyrite and siderite. High TOC content, but low detrital input generated from strong Asian summer monsoon intensity during the early Holocene are accountable for intensive diagenesis in the lowermost subsection. Complete erasing of detrital magnetic input signal at certain positions of the lowermost subsection, and considerable formation of authigenic siderite indicate that palaeomagnetic records of the studied core have been significantly compromised. The studied core has relatively higher TOC content, lower detrital matter content, calmer sedimentary environments, and less DO available at its water-sediment interface than the cores retrieved at relatively shallower water depths, which all contribute to its relatively stronger diagenesis. Progressive thickening of the upper two subsections with increasing water depth is owing to progressive increase in sedimentation rate with increasing water depth, which is the key factor in determining the thickness of each diagenetic subsection of cores from HGY. It would be better that lake sediments for palaeomagnetic investigations collected at a water depth shallower than the depth of its thermocline.

Aquatic insect assemblages associated with subalpine stream segment types in relict glaciated headwaters

USGS Publications Warehouse

Kubo, Joshua S.; Torgersen, Christian E.; Bolton, Susan M.; Weekes, Anne A.; Gara, Robert I.

2013-01-01

1. Aquatic habitats and biotic assemblages in subalpine headwaters are sensitive to climate and human impacts. Understanding biotic responses to such perturbations and the contribution of high-elevation headwaters to riverine biodiversity requires the assessment of assemblage composition among habitat types. We compared aquatic insect assemblages among headwater stream segment types in relict glaciated subalpine basins in Mt. Rainier National Park, Washington, USA. 2. Aquatic insects were collected during summer and autumn in three headwater basins. In each basin, three different stream segment types were sampled: colluvial groundwater sources, alluvial lake inlets, and cascade-bedrock lake outlets. Ward's hierarchical cluster analysis revealed high β diversity in aquatic insect assemblages, and non-metric multidimensional scaling indicated that spatial and temporal patterns in assemblage composition differed among headwater stream segment types. Aquatic insect assemblages showed more fidelity to stream segment types than to individual basins, and the principal environmental variables associated with assemblage structure were temperature and substrate. 3. Indicator species analyses identified specific aquatic insects associated with each stream segment type. Several rare and potentially endemic aquatic insect taxa were present, including the recently described species, Lednia borealis (Baumann and Kondratieff). 4. Our results indicate that aquatic insect assemblages in relict glaciated subalpine headwaters were strongly differentiated among stream segment types. These results illustrate the contribution of headwaters to riverine biodiversity and emphasise the importance of these habitats for monitoring biotic responses to climate change. Monitoring biotic assemblages in high-elevation headwaters is needed to prevent the potential loss of unique and sensitive biota.

Effects of reconstruction of a pre-European vertebrate assemblage on ground-dwelling arachnids in arid Australia.

PubMed

Silvey, Colin J; Hayward, Matthew W; Gibb, Heloise

2015-06-01

Species loss can result in changes in assemblage structure and ecosystem function through ecological cascades. Australian vertebrate assemblages changed significantly following European colonisation, which resulted in the establishment of invasive vertebrates and the loss of native marsupials, many of which consume invertebrates. Conservation focusses on the removal of invasive carnivores and the reintroduction of regionally extinct species to fenced sites, resulting in what could be considered a reconstruction of pre-European vertebrate assemblages. In semi-arid Australian spinifex mallee ecosystems, we asked: (1) what is the effect of reconstructed pre-European vertebrate assemblages on native arachnid assemblages? and (2) what direct or indirect mechanisms (predation, disturbance and/or competition) could plausibly be responsible for these effects? We compared sites with reconstructed vertebrate assemblages with paired control sites. Arachnids were sampled using pitfall trapping and direct searching. Hypotheses regarding mechanisms were tested using scat analysis (predation) and by comparing burrow depth (disturbance) and scorpion mass (competition) between control and reconstructed sites. The dominant dune scorpion, Urodacus yaschenkoi, was less abundant and a wolf spider (Lycosa gibsoni species group) more abundant in reconstructed sites. Differences in spider assemblage composition were marginally non-significant. Scat analysis confirmed native vertebrate predation on scorpions and we found no evidence that competition or disturbance affected scorpions. We, thus, suggest that changes in spider assemblages may have resulted from ecological cascades via decreases in dune scorpions. The loss of omnivorous mammals and other changes associated with the invasion of carnivores may, therefore, have had broad-reaching consequences for native arachnid assemblages in Australian ecosystems.

Recent saltmarsh foraminiferal assemblages from Iceland

NASA Astrophysics Data System (ADS)

Lübbers, Julia; Schönfeld, Joachim

2018-01-01

This study reports for the first time boreal to subarctic intertidal foraminiferal assemblages from saltmarshes at Borgarnes and Faskrudsfjördur on Iceland. The composition of living and dead foraminiferal assemblages was investigated along transects from the tidal flat to the highest reach of halophytic plants. The foraminiferal assemblages from Borgarnes showed 18 species in the total foraminiferal assemblage of which only 7 species were recorded in the living fauna. The assemblages were dominated by agglutinated taxa, whereas 3 calcareous species were recorded, of which only Haynesina orbicularis was found in the living fauna. The distribution limit of calcifying species corresponds to the lower boundary of the lower saltmarsh vegetation zone. Furthermore, calcareous tests showed many features of dissolution, which is an indication of a carbonate corrosive environment. The species forming the dead assemblages were mainly derived from the ambient intertidal areas and were displaced by tidal currents into the saltmarsh. The foraminiferal assemblages from Faskrudsfjördur showed two species, of which only one species was recorded in the living fauna. The assemblage was dominated by the agglutinated foraminifer Trochaminita irregularis. The foraminiferal species recorded on Iceland were the same as commonly found elsewhere in Europa. Since no species was found which is endemic to North America, Iceland is considered part of the European bio province. The foraminiferal could have been immigrated to Iceland from Europe through warm water currents, migratory birds or marine traffic since the last Ice Age.

Environmental variables measured at multiple spatial scales exert uneven influence on fish assemblages of floodplain lakes

USGS Publications Warehouse

Dembkowski, Daniel J.; Miranda, Leandro E.

2014-01-01

We examined the interaction between environmental variables measured at three different scales (i.e., landscape, lake, and in-lake) and fish assemblage descriptors across a range of over 50 floodplain lakes in the Mississippi Alluvial Valley of Mississippi and Arkansas. Our goal was to identify important local- and landscape-level determinants of fish assemblage structure. Relationships between fish assemblage structure and variables measured at broader scales (i.e., landscape-level and lake-level) were hypothesized to be stronger than relationships with variables measured at finer scales (i.e., in-lake variables). Results suggest that fish assemblage structure in floodplain lakes was influenced by variables operating on three different scales. However, and contrary to expectations, canonical correlations between in-lake environmental characteristics and fish assemblage structure were generally stronger than correlations between landscape-level and lake-level variables and fish assemblage structure, suggesting a hierarchy of influence. From a resource management perspective, our study suggests that landscape-level and lake-level variables may be manipulated for conservation or restoration purposes, and in-lake variables and fish assemblage structure may be used to monitor the success of such efforts.

Drivers of larval fish assemblage shift during the spring-summer transition in the coastal Mediterranean

NASA Astrophysics Data System (ADS)

Álvarez, Itziar; Catalán, Ignacio A.; Jordi, Antoni; Palmer, Miquel; Sabatés, Ana; Basterretxea, Gotzon

2012-01-01

The influence of coastal environmental conditions from winter-spring to summer on fish larvae assemblages in a temperate area has suggested a seasonal shift in ecosystem-level variation through which trophic pathways shift from the pelagic to the benthic system. This variation may be related to marked effects in the reproductive strategies in the fishes inhabiting the area and indirectly affect ichthyoplankton assemblages. Larval fish assemblages were sampled fortnightly at three stations located in coastal waters off southern Mallorca (Western Mediterranean) from March to August 2007, covering the main spawning period for the resident coastal fish in this region. The larval fish assemblage showed clear seasonality with higher specific abundance but lower diversity in the spring. Two main assemblages were identified: a spring assemblage, occurring at surface seawater temperatures <20 °C and dominated by species with relatively larger home ranges, such as Boops boops, Sardina pilchardus, Trachurus trachurus, and Spicara smaris, and a summer assemblage characterised by the presence of the benthopelagic Coris julis, Serranus hepatus, Serranus cabrilla and Mullus spp., among others. The shift between these ichthyoplankton communities occurred in early June, coinciding with the onset of summer hydrographical conditions and the local benthic productivity peak.

Fish assemblages and habitat relationships in a small northern Great Plains stream

USGS Publications Warehouse

Barfoot, C.A.; White, R.G.

1999-01-01

We examined fish populations and environmental characteristics of pool and riffle habitats of Little Beaver Creek, Montana, a small northern Great Plains stream. We collected 4,980 fishes representing 20 species in eight families. The most abundant and species-rich family was Cyprinidae. Nearly 88% (4,369) of all fishes were collected in pools. Pools also supported greater numbers ofspecies (x = 6.3, SO = 2.6, n = 58) than did riffles ( x = 2.2, SO = 1.9, n = 47). Most species showed distinct patterns of relative abundance along the stream gradient. Community changes were primarily reflected by the downstream addition of species; species replacement was of less importance. A multivariate analysis of fish relative abundance identified two relatively well-defined pool fish assemblages: a downstream assemblage comprised largely of native fluvial cyprinids, and a more diverse midstream-upstream assemblage comprised of fishes from several families. No well-defined assemblages were identified in riffle habitats. Environmental measures of stream size, substrate characteristics, water clarity, and banks ide conditions appeared to be associated with differences in fish assemblage structure. However, correlations between habitat conditions and fish assemblages were weak, possibly because a complex of factors act conculTently to shape assemblages.

Middle and late Pleistocene Middle Stone Age lithic technology from Pinnacle Point 13B (Mossel Bay, Western Cape Province, South Africa).

PubMed

Thompson, Erin; Williams, Hope M; Minichillo, Tom

2010-01-01

Excavations at a complex of caves and open air sites at Pinnacle Point, Mossel Bay, Southern Africa have uncovered rich stratified assemblages of Middle Stone Age materials, including those from Pinnacle Point Cave 13B (PP13B) that comprises the first modernly excavated assemblage in southern Africa to be securely dated to the Middle Pleistocene. We report here on the complete excavated lithic artifact assemblage from PP13B. Both technological and typological analyses of the complete assemblage were performed. The assemblage-scale analysis allows for intrasite comparison as well as comparison of the PP13B assemblage with other sites from the region. No size-related pattern of change over time was observed within the PP13B assemblage, although there is significant evidence for varying strategies of lithic reduction between excavation areas within the cave. Comparison with other material from the Southern African MSA suggests that there is significant inter- and intra-site variability in the Southern African Middle Stone Age, even between portions of assemblages that are roughly contemporaneous. Copyright © 2010 Elsevier Ltd. All rights reserved.

More eyes on the prize: variability in White Americans' perceptions of progress toward racial equality.

PubMed

Brodish, Amanda B; Brazy, Paige C; Devine, Patricia G

2008-04-01

Much recent research suggests that Whites and non-Whites think differently about issues of race in contemporary America. For example, Eibach and Ehrlinger (2006) recently demonstrated that Whites perceive that more progress toward racial equality has been made as compared to non-Whites. The authors of this article sought to extend Eibach and Ehrlinger's analysis. To this end, they found that differences in Whites' and non-Whites' perceptions of racial progress can be explained by the reference points they use for understanding progress toward racial equality (Study 1). Furthermore, they demonstrated that there is variability in White people's perceptions of racial progress that can be explained by self-reported racial prejudice (Studies 1 and 2). Finally, they demonstrated that White people's perceptions of racial progress predict reactions to affirmative action (Study 2). Implications for better understanding intergroup relations and reactions to social policies are discussed.

Differences in the structure of copepod assemblages in four tropical estuaries: Importance of pollution and the estuary hydrodynamics.

PubMed

Araujo, Adriana V; Dias, Cristina O; Bonecker, Sérgio L C

2017-02-15

We examined the relationship between pollution and structure of copepod assemblages in estuaries, using sampling standardization of salinity range to reduce the effects of "Estuarine Quality Paradox". Copepod assemblages were analyzed in four Southeast Brazilian estuaries with different water quality levels and different hydrodynamic characteristics. The pollution negatively impacted the descriptors of the assemblage structure. The distribution of structure of copepod assemblages also showed a main separation trend between the most polluted estuaries and those less polluted. Temperature was the main factor affecting the assemblage structuring in the four estuaries. This factor acted in synergism with the effects of pollution impact and physical characteristics of the estuaries on the structure of copepod assemblages, supporting the potential vulnerability of coastal environments due to nutrient enrichment associated with climate change. Our study demonstrated the importance of sampling standardization of the salinity range in estuaries for reliable analysis of pollution effects on biota. Copyright © 2016 Elsevier Ltd. All rights reserved.

Does climate influence assemblages of anurans and lizards in a coastal area of north-eastern Brazil?

NASA Astrophysics Data System (ADS)

Rodrigues, João Fabrício Mota; Borges-Leite, Maria Juliana; Borges-Nojosa, Diva Maria

2016-11-01

Environmental factors influence diverse assemblage features such as species abundances, richness, and nestedness. Amphibians and reptiles play important roles in terrestrial ecosystems, but there is still a lack of information about the assemblages of these animals in many regions. In this study, we aimed to understand how environmental factors influence the anurans and lizards assemblages from São Gonçalo do Amarante, Ceará, Brazil. Herpetofauna samplings were performed monthly in São Gonçalo do Amarante from January 2008 to May 2009, excluding April 2008. We sampled animals (anurans and lizards) using pitfall traps and active searches. The abundance and richness of lizards were positively related to temperature and negatively related to precipitation. Anuran assemblage was not influenced by precipitation, but its abundance was negatively influenced by temperature. Temperature generated a nested pattern in the lizard assemblage, but precipitation did not produce this pattern in anurans. Finally, our results reinforce the importance of environmental factors, mainly temperature, in structuring assemblages of anurans and lizards.

Arrhenius Rate: constant volume burn

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menikoff, Ralph

A constant volume burn occurs for an idealized initial state in which a large volume of reactants at rest is suddenly raised to a high temperature and begins to burn. Due to the uniform spatial state, there is no fluid motion and no heat conduction. This reduces the time evolu tion to an ODE for the reaction progress variable. With an Arrhenius reaction rate, two characteristics of thermal ignition are illustrated: induction time and thermal runaway. The Frank-Kamenetskii approximation then leads to a simple expression for the adiabatic induction time. For a first order reaction, the analytic solution is derivedmore » and used to illustrate the effect of varying the activation temperature; in particular, on the induction time. In general, the ODE can be solved numerically. This is used to illustrate the effect of varying the reaction order. We note that for a first order reaction, the time evolution of the reaction progress variable has an exponential tail. In contrast, for a reaction order less than one, the reaction completes in a nite time. The reaction order also affects the induction time.« less

Biological assessments of Appalachian streams based on predictive models for fish, macroinvertebrate, and diatom assemblages

USGS Publications Warehouse

Carlisle, D.M.; Hawkins, C.P.; Meador, M.R.; Potapova, M.; Falcone, J.

2008-01-01

We developed empirical models for fish, macroinvertebrate, and diatom assemblages to assess the biological condition of 268 streams sampled from 1993 to 2002 in 7 major river basins in the Appalachian region of the USA. These models estimate the expected taxonomic composition at each site based on observed variation in taxonomic composition at reference sites. The index, O/E, is the ratio of the number of predicted taxa that were observed (O) to that expected (E) to occur at a site and is a measure of taxonomic completeness. We compared how O/E for each assemblage varied among major landuse settings and whether impaired assemblages were associated with particular physicochemical conditions. We also examined concordance among assemblages in their response to stress. Biological, chemical, and physical data were collected following consistent protocols. We used land-cover criteria, published data, and topographic maps to classify sites by major landuse setting. Fish, macroinvertebrate, and diatom assemblages had been sampled at 73, 108, and 52, respectively, of the least disturbed sites used to establish reference conditions. The models accounted for a substantial portion of the natural variation in taxonomic composition across sites that was associated with biogeographic, climatic, and basin-scale factors and generally were unbiased across the range of environmental gradients observed in the region. Assessments at nonreference sites showed that impairment of fish and macroinvertebrate assemblages was most strongly associated with agriculture and urban land uses, whereas impairment of diatom assemblages was most strongly associated with mining in the basin. Concordance in assessments among assemblages was not strong. Assessments based on 2 assemblages differed in 28 to 57% of cases, and assessments were never concordant for cases where all 3 assemblages were sampled. Furthermore, only 1/2 of these cases would have been assessed as ecologically impaired had only 1 assemblage been sampled. Differences between observed and predicted frequencies of occurrence for individual taxa were generally consistent with known tolerances to environmental stressors and might aid in identifying causes of biological impairment. ?? 2008 by The North American Benthological Society.

Large-Scale Spatial Distribution Patterns of Echinoderms in Nearshore Rocky Habitats

PubMed Central

Iken, Katrin; Konar, Brenda; Benedetti-Cecchi, Lisandro; Cruz-Motta, Juan José; Knowlton, Ann; Pohle, Gerhard; Mead, Angela; Miloslavich, Patricia; Wong, Melisa; Trott, Thomas; Mieszkowska, Nova; Riosmena-Rodriguez, Rafael; Airoldi, Laura; Kimani, Edward; Shirayama, Yoshihisa; Fraschetti, Simonetta; Ortiz-Touzet, Manuel; Silva, Angelica

2010-01-01

This study examined echinoderm assemblages from nearshore rocky habitats for large-scale distribution patterns with specific emphasis on identifying latitudinal trends and large regional hotspots. Echinoderms were sampled from 76 globally-distributed sites within 12 ecoregions, following the standardized sampling protocol of the Census of Marine Life NaGISA project (www.nagisa.coml.org). Sample-based species richness was overall low (<1–5 species per site), with a total of 32 asteroid, 18 echinoid, 21 ophiuroid, and 15 holothuroid species. Abundance and species richness in intertidal assemblages sampled with visual methods (organisms >2 cm in 1 m2 quadrats) was highest in the Caribbean ecoregions and echinoids dominated these assemblages with an average of 5 ind m−2. In contrast, intertidal echinoderm assemblages collected from clearings of 0.0625 m2 quadrats had the highest abundance and richness in the Northeast Pacific ecoregions where asteroids and holothurians dominated with an average of 14 ind 0.0625 m−2. Distinct latitudinal trends existed for abundance and richness in intertidal assemblages with declines from peaks at high northern latitudes. No latitudinal trends were found for subtidal echinoderm assemblages with either sampling technique. Latitudinal gradients appear to be superseded by regional diversity hotspots. In these hotspots echinoderm assemblages may be driven by local and regional processes, such as overall productivity and evolutionary history. We also tested a set of 14 environmental variables (six natural and eight anthropogenic) as potential drivers of echinoderm assemblages by ecoregions. The natural variables of salinity, sea-surface temperature, chlorophyll a, and primary productivity were strongly correlated with echinoderm assemblages; the anthropogenic variables of inorganic pollution and nutrient contamination also contributed to correlations. Our results indicate that nearshore echinoderm assemblages appear to be shaped by a network of environmental and ecological processes, and by the differing responses of various echinoderm taxa, making generalizations about the patterns of nearshore rocky habitat echinoderm assemblages difficult. PMID:21079760

A novel high-resolution multilocus sequence typing of Giardia intestinalis Assemblage A isolates reveals zoonotic transmission, clonal outbreaks and recombination.

PubMed

Ankarklev, Johan; Lebbad, Marianne; Einarsson, Elin; Franzén, Oscar; Ahola, Harri; Troell, Karin; Svärd, Staffan G

2018-06-01

Molecular epidemiology and genotyping studies of the parasitic protozoan Giardia intestinalis have proven difficult due to multiple factors, such as low discriminatory power in the commonly used genotyping loci, which has hampered molecular analyses of outbreak sources, zoonotic transmission and virulence types. Here we have focused on assemblage A Giardia and developed a high-resolution assemblage-specific multilocus sequence typing (MLST) method. Analyses of sequenced G. intestinalis assemblage A genomes from different sub-assemblages identified a set of six genetic loci with high genetic variability. DNA samples from both humans (n = 44) and animals (n = 18) that harbored Giardia assemblage A infections, were PCR amplified (557-700 bp products) and sequenced at the six novel genetic loci. Bioinformatic analyses showed five to ten-fold higher levels of polymorphic sites than what was previously found among assemblage A samples using the classic genotyping loci. Phylogenetically, a division of two major clusters in assemblage A became apparent, separating samples of human and animal origin. A subset of human samples (n = 9) from a documented Giardia outbreak in a Swedish day-care center, showed full complementarity at nine genetic loci (the six new and the standard BG, TPI and GDH loci), strongly suggesting one source of infection. Furthermore, three samples of human origin displayed MLST profiles that were phylogenetically more closely related to MLST profiles from animal derived samples, suggesting zoonotic transmission. These new genotyping loci enabled us to detect events of recombination between different assemblage A isolates but also between assemblage A and E isolates. In summary, we present a novel and expanded MLST strategy with significantly improved sensitivity for molecular analyses of virulence types, zoonotic potential and source tracking for assemblage A Giardia. Copyright © 2018. Published by Elsevier B.V.

An empirical, hierarchical typology of tree species assemblages for assessing forest dynamics under global change scenarios

PubMed Central

Coulston, John W.; Wear, David N.

2017-01-01

The composition of tree species occurring in a forest is important and can be affected by global change drivers such as climate change. To inform assessment and projection of global change impacts at broad extents, we used hierarchical cluster analysis and over 120,000 recent forest inventory plots to empirically define forest tree assemblages across the U.S., and identified the indicator and dominant species associated with each. Cluster typologies in two levels of a hierarchy of forest assemblages, with 29 and 147 groups respectively, were supported by diagnostic criteria. Groups in these two levels of the hierarchy were labeled based on the top indicator species in each, and ranged widely in size. For example, in the 29-cluster typology, the sugar maple-red maple assemblage contained the largest number of plots (30,068), while the butternut-sweet birch and sourwood-scarlet oak assemblages were both smallest (6 plots each). We provide a case-study demonstration of the utility of the typology for informing forest climate change impact assessment. For five assemblages in the 29-cluster typology, we used existing projections of changes in importance value (IV) for the dominant species under one low and one high climate change scenario to assess impacts to the assemblages. Results ranged widely for each scenario by the end of the century, with each showing an average decrease in IV for dominant species in some assemblages, including the balsam fir-quaking aspen assemblage, and an average increase for others, like the green ash-American elm assemblage. Future work should assess adaptive capacity of these forest assemblages and investigate local population- and community-level dynamics in places where dominant species may be impacted. This typology will be ideal for monitoring, assessing, and projecting changes to forest communities within the emerging framework of macrosystems ecology, which emphasizes hierarchies and broad extents. PMID:28877258

Large-scale spatial distribution patterns of echinoderms in nearshore rocky habitats.

PubMed

Iken, Katrin; Konar, Brenda; Benedetti-Cecchi, Lisandro; Cruz-Motta, Juan José; Knowlton, Ann; Pohle, Gerhard; Mead, Angela; Miloslavich, Patricia; Wong, Melisa; Trott, Thomas; Mieszkowska, Nova; Riosmena-Rodriguez, Rafael; Airoldi, Laura; Kimani, Edward; Shirayama, Yoshihisa; Fraschetti, Simonetta; Ortiz-Touzet, Manuel; Silva, Angelica

2010-11-05

This study examined echinoderm assemblages from nearshore rocky habitats for large-scale distribution patterns with specific emphasis on identifying latitudinal trends and large regional hotspots. Echinoderms were sampled from 76 globally-distributed sites within 12 ecoregions, following the standardized sampling protocol of the Census of Marine Life NaGISA project (www.nagisa.coml.org). Sample-based species richness was overall low (<1-5 species per site), with a total of 32 asteroid, 18 echinoid, 21 ophiuroid, and 15 holothuroid species. Abundance and species richness in intertidal assemblages sampled with visual methods (organisms >2 cm in 1 m(2) quadrats) was highest in the Caribbean ecoregions and echinoids dominated these assemblages with an average of 5 ind m(-2). In contrast, intertidal echinoderm assemblages collected from clearings of 0.0625 m(2) quadrats had the highest abundance and richness in the Northeast Pacific ecoregions where asteroids and holothurians dominated with an average of 14 ind 0.0625 m(-2). Distinct latitudinal trends existed for abundance and richness in intertidal assemblages with declines from peaks at high northern latitudes. No latitudinal trends were found for subtidal echinoderm assemblages with either sampling technique. Latitudinal gradients appear to be superseded by regional diversity hotspots. In these hotspots echinoderm assemblages may be driven by local and regional processes, such as overall productivity and evolutionary history. We also tested a set of 14 environmental variables (six natural and eight anthropogenic) as potential drivers of echinoderm assemblages by ecoregions. The natural variables of salinity, sea-surface temperature, chlorophyll a, and primary productivity were strongly correlated with echinoderm assemblages; the anthropogenic variables of inorganic pollution and nutrient contamination also contributed to correlations. Our results indicate that nearshore echinoderm assemblages appear to be shaped by a network of environmental and ecological processes, and by the differing responses of various echinoderm taxa, making generalizations about the patterns of nearshore rocky habitat echinoderm assemblages difficult.

Pattern of distribution and diversity of demersal assemblages in the central Mediterranean Sea

NASA Astrophysics Data System (ADS)

Colloca, F.; Cardinale, M.; Belluscio, A.; Ardizzone, G.

2003-03-01

A highly diversified mix of fish species, cephalopods and crustaceans, together with several macro-epibenthic organisms, compose trawl catches in the Mediterranean Sea. Management of Mediterranean trawling needs a multispecies approach that considers the community and not the single species as the basic unit of the analysis. While many studies have correlated several environmental factors to the spatial organizations of demersal organisms, few have focused on the role of macro-epibenthic communities in structuring demersal assemblages. In this paper, the following hypotheses were tested: (1) there are discrete demersal assemblages in the central Mediterranean Sea; (2) the distribution and diversity of demersal communities does not change on small temporal scales (1 year); (3) the demersal assemblages were segregated across both different epibenthic assemblages and depth gradients. Shallow stations were separated into coastal and middle-deep shelf assemblages while stations on the slope formed three main assemblages: slope edge, upper slope and middle slope assemblages. The demersal community did not show a substantial change at the small temporal scale. Sandy, sand-muddy and detritic epibenthic communities characterized coastal shelf assemblages, while epibenthic assemblage on muddy bottoms were dominant in the deeper areas of the shelf. A well-defined difference in macro-epibenthic faunal associations among stations on the slope (depth >200 m) was not found. Depth appeared to affect diversity of the main taxa of demersal organisms in different ways. Teleostean diversity did not show any trend with depth, the number of cephalopod species increased on the shelf and decreased on the slope while crustacean and elasmobranch species richness increased significantly from the shelf to the middle slope. The strong correlation shown in this study between epifaunal benthic communities and demersal fish assemblages requires the formulation of an ecosystem-based management for the Mediterranean Sea trawl fisheries. The existence of such biological diversity certainly contributes to the Mediterranean ecosystem health and its conservation should become one of the main objective of demersal resources management in the future.

A spray flamelet/progress variable approach combined with a transported joint PDF model for turbulent spray flames

NASA Astrophysics Data System (ADS)

Hu, Yong; Olguin, Hernan; Gutheil, Eva

2017-05-01

A spray flamelet/progress variable approach is developed for use in spray combustion with partly pre-vaporised liquid fuel, where a laminar spray flamelet library accounts for evaporation within the laminar flame structures. For this purpose, the standard spray flamelet formulation for pure evaporating liquid fuel and oxidiser is extended by a chemical reaction progress variable in both the turbulent spray flame model and the laminar spray flame structures, in order to account for the effect of pre-vaporised liquid fuel for instance through use of a pilot flame. This new approach is combined with a transported joint probability density function (PDF) method for the simulation of a turbulent piloted ethanol/air spray flame, and the extension requires the formulation of a joint three-variate PDF depending on the gas phase mixture fraction, the chemical reaction progress variable, and gas enthalpy. The molecular mixing is modelled with the extended interaction-by-exchange-with-the-mean (IEM) model, where source terms account for spray evaporation and heat exchange due to evaporation as well as the chemical reaction rate for the chemical reaction progress variable. This is the first formulation using a spray flamelet model considering both evaporation and partly pre-vaporised liquid fuel within the laminar spray flamelets. Results with this new formulation show good agreement with the experimental data provided by A.R. Masri, Sydney, Australia. The analysis of the Lagrangian statistics of the gas temperature and the OH mass fraction indicates that partially premixed combustion prevails near the nozzle exit of the spray, whereas further downstream, the non-premixed flame is promoted towards the inner rich-side of the spray jet since the pilot flame heats up the premixed inner spray zone. In summary, the simulation with the new formulation considering the reaction progress variable shows good performance, greatly improving the standard formulation, and it provides new insight into the local structure of this complex spray flame.

Determinism in fish assemblages of floodplain lakes of the vastly disturbed Mississippi Alluvial Valley

USGS Publications Warehouse

Miranda, L.E.; Lucas, G.M.

2004-01-01

The Mississippi Alluvial Valley between southern Illinois and southern Louisiana contains hundreds of floodplain lakes, most of which have been adversely affected by landscape modifications used to control flooding and support agriculture. We examined fish assemblages in lakes of this region to determine whether deterministic patterns developed in relation to prominent abiotic lake characteristics and to explore whether relevant abiotic factors could be linked to specific assemblage structuring mechanisms. The distributions of 14 taxa in 29 lakes were governed primarily by two gradients that contrasted assemblages in terms of lake area, lake elongation, and water clarity. The knowledge of whether a lake was clear or turbid, large or small, and long or short helped determine fish assemblage characteristics. Abiotic factors influenced fish assemblage structures, plausibly through limitations on foraging and physiological tolerances. Determinism in assemblage organization of floodplain lakes relative to recurrence in physicochemical features has been documented for unaltered rivers. Whereas the Mississippi Alluvial Valley has been subjected to vast anthropogenic disturbances and is not a fully functional floodplain river, fish assemblages in its floodplain lakes remain deterministic and organized by the underlying factors that also dictate assemblages in unaltered rivers. In advanced stages of lake aging, fish assemblages in these lakes are expected to largely include species that thrive in turbid, shallow systems with few predators and low oxygen concentrations. The observed patterns related to physical characteristics of these lakes suggest three general conservation foci, including (1) watershed management to control erosion, (2) removal of sediments or increases in water level to alleviate depth reductions and derived detriments to water physicochemistry, and (3) management of fish populations through stockings, removals, and harvest regulations.

Effects of dams in river networks on fish assemblages in non-impoundment sections of rivers in Michigan and Wisconsin, USA

USGS Publications Warehouse

Stewart, Jana S.; Lizhu Wang,; Infante, Dana M.; Lyons, John D.; Arthur Cooper,

2011-01-01

Regional assessment of cumulative impacts of dams on riverine fish assemblages provides resource managers essential information for dam operation, potential dam removal, river health assessment and overall ecosystem management. Such an assessment is challenging because characteristics of fish assemblages are not only affected by dams, but also influenced by natural variation and human-induced modification (in addition to dams) in thermal and flow regimes, physicochemical habitats and biological assemblages. This study evaluated the impacts of dams on river fish assemblages in the non-impoundment sections of rivers in the states of Michigan and Wisconsin using multiple fish assemblage indicators and multiple approaches to distinguish the influences of dams from those of other natural and human-induced factors. We found that environmental factors that influence fish assemblages in addition to dams should be incorporated when evaluating regional effects of dams on fish assemblages. Without considering such co-influential factors, the evaluation is inadequate and potentially misleading. The role of dams alone in determining fish assemblages at a regional spatial scale is relatively small (explained less than 20% of variance) compared with the other environmental factors, such as river size, flow and thermal regimes and land uses jointly. However, our results do demonstrate that downstream and upstream dams can substantially modify fish assemblages in the non-impoundment sections of rivers. After excluding river size and land-use influences, our results clearly demonstrate that dams have significant impacts on fish biotic-integrity and habitat-and-social-preference indicators. The influences of the upstream dams, downstream dams, distance to dams, and dam density differ among the fish indicators, which have different implications for maintaining river biotic integrity, protecting biodiversity and managing fisheries.

Consistency of temporal and habitat-related differences among assemblages of fish in coastal lagoons

NASA Astrophysics Data System (ADS)

Gray, Charles A.; Rotherham, Douglas; Johnson, Daniel D.

2011-12-01

The consistency of habitat-related differences in coastal lagoon fish assemblages was assessed across different spatial and temporal scales. Multimesh gillnets were used to sample assemblages of fish on a monthly basis for 1-year in three habitats (shallow seagrass, shallow bare and deep substrata) at two locations (>1 km apart), in each of two coastal lagoons (approximately 500 km apart), in southeastern Australia. A total of 48 species was sampled with 34 species occurring in both lagoons and in all three habitats; species caught in only one lagoon or habitat occurred in low numbers. Ten species dominated assemblages and accounted for more than 83% of all individuals sampled. In both lagoons, assemblages in the deep habitat consistently differed to those in the shallow strata (regardless of habitat). Several species were caught more frequently or in larger numbers in the deep habitat. Assemblages in the two shallow habitats did not differ consistently and were dominated by the same species and sizes of fish, possibly due to habitat heterogeneity and the scale and method of sampling. Within each lagoon, very few between location differences in assemblages within each habitat were observed. Consistent differences in assemblages were detected between lagoons for the shallow bare and deep habitats, indicating there were some intrinsic differences in ichthyofauna between lagoons. Assemblages in spring differed to those in summer, which differed to those in winter for the shallow bare habitat in both lagoons, and the deep habitat in only one lagoon. Fish-habitat relationships are complex and differences in the fish fauna between habitats were often temporally inconsistent. This study highlights the need for greater testing of habitat relationships in space and time to assess the generality of observations and to identify the processes responsible for structuring assemblages.

Effects of dams in river networks on fish assemblages in non-impoundment sections of rivers in Michigan and Wisconsin, USA

USGS Publications Warehouse

Wang, L.; Infante, D.; Lyons, J.; Stewart, J.; Cooper, A.

2011-01-01

Regional assessment of cumulative impacts of dams on riverine fish assemblages provides resource managers essential information for dam operation, potential dam removal, river health assessment and overall ecosystem management. Such an assessment is challenging because characteristics of fish assemblages are not only affected by dams, but also influenced by natural variation and human-induced modification (in addition to dams) in thermal and flow regimes, physicochemical habitats and biological assemblages. This study evaluated the impacts of dams on river fish assemblages in the non-impoundment sections of rivers in the states of Michigan and Wisconsin using multiple fish assemblage indicators and multiple approaches to distinguish the influences of dams from those of other natural and human-induced factors. We found that environmental factors that influence fish assemblages in addition to dams should be incorporated when evaluating regional effects of dams on fish assemblages. Without considering such co-influential factors, the evaluation is inadequate and potentially misleading. The role of dams alone in determining fish assemblages at a regional spatial scale is relatively small (explained less than 20% of variance) compared with the other environmental factors, such as river size, flow and thermal regimes and land uses jointly. However, our results do demonstrate that downstream and upstream dams can substantially modify fish assemblages in the non-impoundment sections of rivers. After excluding river size and land-use influences, our results clearly demonstrate that dams have significant impacts on fish biotic-integrity and habitat-and-social-preference indicators. The influences of the upstream dams, downstream dams, distance to dams, and dam density differ among the fish indicators, which have different implications for maintaining river biotic integrity, protecting biodiversity and managing fisheries. ?? 2010 John Wiley & Sons, Ltd.

Carbon sequestration via reaction with basaltic rocks: geochemical modeling and experimental results

USGS Publications Warehouse

Rosenbauer, Robert J.; Thomas, Burt; Bischoff, James L.; Palandri, James

2012-01-01

Basaltic rocks are potential repositories for sequestering carbon dioxide (CO2) because of their capacity for trapping CO2 in carbonate minerals. We carried out a series of thermodynamic equilibrium models and high pressure experiments, reacting basalt with CO2-charged fluids over a range of conditions from 50 to 200 °C at 300 bar. Results indicate basalt has a high reactivity to CO2 acidified brine. Carbon dioxide is taken up from solution at all temperatures from 50 to 200 °C, 300 bar, but the maximum extent and rate of reaction occurs at 100 °C, 300 bar. Reaction path simulations utilizing the geochemical modeling program CHILLER predicted an equilibrium carbonate alteration assemblage of calcite, magnesite, and siderite, but the only secondary carbonate identified in the experiments was a ferroan magnesite. The amount of uptake at 100 °C, 300 bar ranged from 8% by weight for a typical tholeite to 26% for a picrite. The actual amount of CO2 uptake and extent of rock alteration coincides directly with the magnesium content of the rock suggesting that overall reaction extent is controlled by bulk basalt Mg content. In terms of sequestering CO2, an average basaltic MgO content of 8% is equivalent to 2.6 × 108 metric ton CO2/km3 basalt.

Fish assemblage dynamics in a Neotropical floodplain relative to aquatic macrophytes and the homogenizing effect of a flood pulse

USGS Publications Warehouse

Gomes, L.C.; Bulla, C. K.; Agostinho, A. A.; Vasconcelos, L. P.; Miranda, Leandro E.

2012-01-01

The presence of aquatic macrophytes is a key factor in the selection of habitats by fish in floodplain lakes because these plants enhance the physical and biological complexities of aquatic habitats. The seasonal flood pulse may influence this interaction, but there is no information in the literature about the effects that flood events may have on macrophytes assemblages and its associated effects on fish assemblages. Thus, this article aimed to investigate whether species richness, evenness and similarities in fish assemblage composition differed between littoral areas vegetated with macrophytes and unvegetated areas, before and after a flood. We sampled three lakes in the floodplain of the upper Paraná River basin. Sampling was conducted before (December 2004 and January 2005) and after (early March, late March and May 2005) a flood event. Overall, species richness and evenness were higher in macrophytes-covered areas. Before the flood, the composition of fish assemblages was distinct when comparing vegetated and unvegetated areas. After the flood, the similarity in fish assemblage composition was higher, indicating a homogenization effect of floods for fish inhabiting littoral areas of floodplain lakes. After the flood, opportunistic species dominated the fish assemblages in aquatic macrophytes, apparently restructuring assemblages in the littoral, restarting a succession process. Thus, the observed homogenization effect of the flood could minimize biological interactions and could induce fish assemblages to begin a new process of structurization.

Anthropogenic disturbance and environmental associations with fish assemblage structure in two nonwadeable rivers

USGS Publications Warehouse

Parks, T. P.; Quist, Michael C.; Pierce, C.L.

2016-01-01

Nonwadeable rivers are unique ecosystems that support high levels of aquatic biodiversity, yet they have been greatly altered by human activities. Although riverine fish assemblages have been studied in the past, we still have an incomplete understanding of how fish assemblages respond to both natural and anthropogenic influences in large rivers. The purpose of this study was to evaluate associations between fish assemblage structure and reach-scale habitat, dam, and watershed land use characteristics. In the summers of 2011 and 2012, comprehensive fish and environmental data were collected from 33 reaches in the Iowa and Cedar rivers of eastern-central Iowa. Canonical correspondence analysis (CCA) was used to evaluate environmental relationships with species relative abundance, functional trait abundance (e.g. catch rate of tolerant species), and functional trait composition (e.g. percentage of tolerant species). On the basis of partial CCAs, reach-scale habitat, dam characteristics, and watershed land use features explained 25.0–81.1%, 6.2–25.1%, and 5.8–47.2% of fish assemblage variation, respectively. Although reach-scale, dam, and land use factors contributed to overall assemblage structure, the majority of fish assemblage variation was constrained by reach-scale habitat factors. Specifically, mean annual discharge was consistently selected in nine of the 11 CCA models and accounted for the majority of explained fish assemblage variance by reach-scale habitat. This study provides important insight on the influence of anthropogenic disturbances across multiple spatial scales on fish assemblages in large river systems.

PERMEABILITY CHANGES IN CRYSTALLINE ROCKS DUE TO TEMPERATURE: EFFECTS OF MINERAL ASSEMBLAGE.

USGS Publications Warehouse

Morrow, C.A.; Moore, Diane E.; Byerlee, J.D.; ,

1985-01-01

The change in permeability with time of granite, quartzite, anorthosite and gabbro was measured while these rocks were subjected to a temperature gradient. Permeability reductions of up to two orders of magnitude were observed, with the greatest reactions occurring in the quartzite. These changes are thought to be caused by dissolution of minerals at high temperatures, and redeposition of the dissolved material at lower temperatures. Quartz appears to be an important mineral in this self-sealing process. If very low permeability is desired around a nuclear waste repository in crystalline rocks, then a quartz-rich rock may be the most appropriate host.

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms.

PubMed

Rezki, Samir; Campion, Claire; Iacomi-Vasilescu, Beatrice; Preveaux, Anne; Toualbia, Youness; Bonneau, Sophie; Briand, Martial; Laurent, Emmanuelle; Hunault, Gilles; Simoneau, Philippe; Jacques, Marie-Agnès; Barret, Matthieu

2016-01-01

Seeds are involved in the vertical transmission of microorganisms from one plant generation to another and consequently act as reservoirs for the plant microbiota. However, little is known about the structure of seed-associated microbial assemblages and the regulators of assemblage structure. In this work, we have assessed the response of seed-associated microbial assemblages of Raphanus sativus to invading phytopathogenic agents, the bacterial strain Xanthomonas campestris pv. campestris (Xcc) 8004 and the fungal strain Alternaria brassicicola Abra43. According to the indicators of bacterial (16S rRNA gene and gyrB sequences) and fungal (ITS1) diversity employed in this study, seed transmission of the bacterial strain Xcc 8004 did not change the overall composition of resident microbial assemblages. In contrast seed transmission of Abra43 strongly modified the richness and structure of fungal assemblages without affecting bacterial assemblages. The sensitivity of seed-associated fungal assemblage to Abra43 is mostly related to changes in relative abundance of closely related fungal species that belong to the Alternaria genus. Variation in stability of the seed microbiota in response to Xcc and Abra43 invasions could be explained by differences in seed transmission pathways employed by these micro-organisms, which ultimately results in divergence in spatio-temporal colonization of the seed habitat.

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

PubMed Central

Rezki, Samir; Campion, Claire; Iacomi-Vasilescu, Beatrice; Preveaux, Anne; Toualbia, Youness; Bonneau, Sophie; Briand, Martial; Laurent, Emmanuelle; Hunault, Gilles; Simoneau, Philippe; Jacques, Marie-Agnès

2016-01-01

Seeds are involved in the vertical transmission of microorganisms from one plant generation to another and consequently act as reservoirs for the plant microbiota. However, little is known about the structure of seed-associated microbial assemblages and the regulators of assemblage structure. In this work, we have assessed the response of seed-associated microbial assemblages of Raphanus sativus to invading phytopathogenic agents, the bacterial strain Xanthomonas campestris pv. campestris (Xcc) 8004 and the fungal strain Alternaria brassicicola Abra43. According to the indicators of bacterial (16S rRNA gene and gyrB sequences) and fungal (ITS1) diversity employed in this study, seed transmission of the bacterial strain Xcc 8004 did not change the overall composition of resident microbial assemblages. In contrast seed transmission of Abra43 strongly modified the richness and structure of fungal assemblages without affecting bacterial assemblages. The sensitivity of seed-associated fungal assemblage to Abra43 is mostly related to changes in relative abundance of closely related fungal species that belong to the Alternaria genus. Variation in stability of the seed microbiota in response to Xcc and Abra43 invasions could be explained by differences in seed transmission pathways employed by these micro-organisms, which ultimately results in divergence in spatio-temporal colonization of the seed habitat. PMID:27077013

Process-Based Species Pools Reveal the Hidden Signature of Biotic Interactions Amid the Influence of Temperature Filtering.

PubMed

Lessard, Jean-Philippe; Weinstein, Ben G; Borregaard, Michael K; Marske, Katharine A; Martin, Danny R; McGuire, Jimmy A; Parra, Juan L; Rahbek, Carsten; Graham, Catherine H

2016-01-01

A persistent challenge in ecology is to tease apart the influence of multiple processes acting simultaneously and interacting in complex ways to shape the structure of species assemblages. We implement a heuristic approach that relies on explicitly defining species pools and permits assessment of the relative influence of the main processes thought to shape assemblage structure: environmental filtering, dispersal limitations, and biotic interactions. We illustrate our approach using data on the assemblage composition and geographic distribution of hummingbirds, a comprehensive phylogeny and morphological traits. The implementation of several process-based species pool definitions in null models suggests that temperature-but not precipitation or dispersal limitation-acts as the main regional filter of assemblage structure. Incorporating this environmental filter directly into the definition of assemblage-specific species pools revealed an otherwise hidden pattern of phylogenetic evenness, indicating that biotic interactions might further influence hummingbird assemblage structure. Such hidden patterns of assemblage structure call for a reexamination of a multitude of phylogenetic- and trait-based studies that did not explicitly consider potentially important processes in their definition of the species pool. Our heuristic approach provides a transparent way to explore patterns and refine interpretations of the underlying causes of assemblage structure.

Dynamics of avian haemosporidian assemblages through millennial time scales inferred from insular biotas of the West Indies

PubMed Central

Soares, Leticia; Latta, Steven C.; Ricklefs, Robert E.

2017-01-01

Although introduced hemosporidian (malaria) parasites (Apicomplexa: Haemosporida) have hastened the extinction of endemic bird species in the Hawaiian Islands and perhaps elsewhere, little is known about the temporal dynamics of endemic malaria parasite populations. Haemosporidian parasites do not leave informative fossils, and records of population change are lacking beyond a few decades. Here, we take advantage of the isolation of West Indian land-bridge islands by rising postglacial sea levels to estimate rates of change in hemosporidian parasite assemblages over a millennial time frame. Several pairs of West Indian islands have been connected and separated by falling and rising sea levels associated with the advance and retreat of Pleistocene continental glaciers. We use island isolation following postglacial sea-level rise, ca. 2.5 ka, to characterize long-term change in insular assemblages of hemosporidian parasites. We find that assemblages on formerly connected islands are as differentiated as assemblages on islands that have never been connected, and both are more differentiated than local assemblages sampled up to two decades apart. Differentiation of parasite assemblages between formerly connected islands reflects variation in the prevalence of shared hemosporidian lineages, whereas differentiation between islands isolated by millions of years reflects replacement of hemosporidian lineages infecting similar assemblages of avian host species. PMID:28607060

Dynamics of avian haemosporidian assemblages through millennial time scales inferred from insular biotas of the West Indies.

PubMed

Soares, Leticia; Latta, Steven C; Ricklefs, Robert E

2017-06-20

Although introduced hemosporidian (malaria) parasites (Apicomplexa: Haemosporida) have hastened the extinction of endemic bird species in the Hawaiian Islands and perhaps elsewhere, little is known about the temporal dynamics of endemic malaria parasite populations. Haemosporidian parasites do not leave informative fossils, and records of population change are lacking beyond a few decades. Here, we take advantage of the isolation of West Indian land-bridge islands by rising postglacial sea levels to estimate rates of change in hemosporidian parasite assemblages over a millennial time frame. Several pairs of West Indian islands have been connected and separated by falling and rising sea levels associated with the advance and retreat of Pleistocene continental glaciers. We use island isolation following postglacial sea-level rise, ca. 2.5 ka, to characterize long-term change in insular assemblages of hemosporidian parasites. We find that assemblages on formerly connected islands are as differentiated as assemblages on islands that have never been connected, and both are more differentiated than local assemblages sampled up to two decades apart. Differentiation of parasite assemblages between formerly connected islands reflects variation in the prevalence of shared hemosporidian lineages, whereas differentiation between islands isolated by millions of years reflects replacement of hemosporidian lineages infecting similar assemblages of avian host species.

Comparison of the assemblage functioning of estuary systems dominated by the seagrass Nanozostera noltii versus the invasive drift seaweed Gracilaria vermiculophylla

NASA Astrophysics Data System (ADS)

Cacabelos, Eva; Engelen, Aschwin H.; Mejia, Astrid; Arenas, Francisco

2012-08-01

Seagrasses are important habitat-formers and facilitator species that form the basis of complex ecosystems in estuaries throughout the world. However, general worldwide declines in seagrass beds have been reported with (invading) bloom-forming seaweeds, which threaten to displace the seagrasses and change the ecosystem fundamentally. We compared the functioning of the community with the intertidal seagrass Nanozostera noltii as the only macrophyte, in a mixed status with the invasive drift seaweed Gracilaria vermiculophylla and with only G. vermiculophylla as macrophyte. These assemblages represent different phases of seaweed invasion. Assemblage functioning was assessed as the metabolic state of the system based on carbon dioxide and oxygen metabolism during submerged and emerged conditions. Across all assemblages production rates were much higher during submerged than during emerged conditions. Assemblage productivity increased from monospecific N. noltii, through mixed to monospecific assemblages of G. vermiculophylla. However, the photosynthetic efficiency at low light intensities (α) of N. noltii assemblages was higher than those dominated by G. vermiculophylla. Metabolic performance patterns were mainly caused by increasing macrophyte biomass from N. noltii to G. vermiculophylla dominated assemblages. Therefore, with the shift from N. noltii to G. vermiculophylla domination, it is likely that these communities will become less efficient, but their productivity will increase considerably.

HPLC method for rapidly following biodiesel fuel transesterification reaction progress using a core-shell column.

PubMed

Allen, Samuel J; Ott, Lisa S

2012-07-01

There are a wide and growing variety of feedstocks for biodiesel fuel. Most commonly, these feedstocks contain triglycerides which are transesterified into the fatty acid alkyl esters (FAAEs) which comprise biodiesel fuel. While the tranesterification reaction itself is simple, monitoring the reaction progress and reaction products is not. Gas chromatography-mass spectrometry is useful for assessing the FAAE products, but does not directly address either the tri-, di-, or monoglycerides present from incomplete transesterification or the free fatty acids which may also be present. Analysis of the biodiesel reaction mixture is complicated by the solubility and physical property differences among the components of the tranesterification reaction mixture. In this contribution, we present a simple, rapid HPLC method which allows for monitoring all of the main components in a biodiesel fuel transesterification reaction, with specific emphasis on the ability to monitor the reaction as a function of time. The utilization of a relatively new, core-shell stationary phase for the HPLC column allows for efficient separation of peaks with short elution times, saving both time and solvent.

Temporal turnover and the maintenance of diversity in ecological assemblages

PubMed Central

Magurran, Anne E.; Henderson, Peter A.

2010-01-01

Temporal variation in species abundances occurs in all ecological communities. Here, we explore the role that this temporal turnover plays in maintaining assemblage diversity. We investigate a three-decade time series of estuarine fishes and show that the abundances of the individual species fluctuate asynchronously around their mean levels. We then use a time-series modelling approach to examine the consequences of different patterns of turnover, by asking how the correlation between the abundance of a species in a given year and its abundance in the previous year influences the structure of the overall assemblage. Classical diversity measures that ignore species identities reveal that the observed assemblage structure will persist under all but the most extreme conditions. However, metrics that track species identities indicate a narrower set of turnover scenarios under which the predicted assemblage resembles the natural one. Our study suggests that species diversity metrics are insensitive to change and that measures that track species ranks may provide better early warning that an assemblage is being perturbed. It also highlights the need to incorporate temporal turnover in investigations of assemblage structure and function. PMID:20980310

Reptile assemblage response to restoration of fire-suppressed longleaf pine sandhills.

PubMed

Steen, David A; Smith, Lora L; Conner, L M; Litt, Andrea R; Provencher, Louis; Hiers, J Kevin; Pokswinski, Scott; Guyer, Craig

2013-01-01

Measuring the effects of ecological restoration on wildlife assemblages requires study on broad temporal and spatial scales. Longleaf pine (Pinus palustris) forests are imperiled due to fire suppression and subsequent invasion by hardwood trees. We employed a landscape-scale, randomized-block design to identify how reptile assemblages initially responded to restoration treatments including removal of hardwood trees via mechanical methods (felling and girdling), application of herbicides, or prescribed burning alone. Then, we examined reptile assemblages after all sites experienced more than a decade of prescribed burning at two- to thee-year return intervals. Data were collected concurrently at reference sites chosen to represent target conditions for restoration. Reptile assemblages changed most rapidly in response to prescribed burning, but reptile assemblages at all sites, including reference sites, were generally indistinguishable by the end of the study. Thus, we suggest that prescribed burning in longleaf pine forests over long time periods is an effective strategy for restoring reptile assemblages to the reference condition. Application of herbicides or mechanical removal of hardwood trees provided no apparent benefit to reptiles beyond what was achieved by prescribed fire alone.

Partial assimilation during crystallization of a (gabbroic) pluton: the gabbronoritic zone of the Atlantis core complex

NASA Astrophysics Data System (ADS)

Barbieri, E.; Brunelli, D.; Hellebrand, E.; Johnson, K. T.; Paganelli, E.

2011-12-01

The lower oceanic crust largely consists of cumulates, representing crystallization products from melt that erupt on the ocean floor. Removal of interstitial melt from the cumulate minerals is believed to be efficient, driven by compaction. Reaction between percolating melts and cumulate minerals can result in micron-to-meter-scale variations in the phase assemblage and composition. Here we report on the results of a highly detailed petrological study of a sequence of lower crustal gabbroic rocks, using textural and chemical criteria to reconstruct the complex interplay between reactive melts and a highly crystallized gabbroic mush. The exceptionally well-preserved gabbroic sequence was recovered during IODP Legs 304 and 305 at the Atlantis Massif. These gabbros are characterized by high-frequency magmatic refilling of a mush zone, as attested by the cm-m thick succession of magmatic layers, with sharp to diffuse contact. The main gabbroic body (between 300 and 1100 mbsf ) is bounded by two layers of olivine rich troctolites interpreted as pervasively fluxed mantle rocks. Closely spaced sampling of the intervals 930-980 and 1130-1190 mbsf reveal evolved gabbroic lithologies closely interspersed with more primitive members. Olivine and plagioclase consumption is accompanied by progressive crystallization of clinopyroxene (cpx) and later orthopyroxene (opx). Both initially appear as interstitial grains, followed by poikilitic and granophyric textures. The onset of reactive percolation is often associated with deformation, recorded as kink bands in relict olivine and plagioclase and wavy mineral contacts wet by thin cpx layers. As a result, plagioclase and olivine chadacrysts in cpx and opx have resorbed appearance (rounded deformed chadacrysts in large undeformed oikocrysts). Typical chemical signatures of this incomplete resorption are high Ni in pyroxene-hosted low-Fo olivines. Resorbed plagioclases have higher REE and positive Sr correlation with Ba attesting to a progressive equilibration with evolved melts. Simple fractional accumulation in a closed system is unable to fit the observed cpx and opx trends. Large deviations from linear correlations require an influx of primitive material in an ongoing differentiating system. Based on the observed consumption of the primitive assemblage we calculate high rates of assimilation of primitive cumulates. However, the assimilation ratio estimated from cpx trace element contents is much higher than that required to fit the opx trends. These observations attest for a multistage evolution of the sampled rocks: the process starts as near-fractional crystallization, reaching high degrees of crystallinity before melt percolation induces olivine and plagioclase resorption, increasing porosity and crystallizing clinopyroxene. The subsequent crystallization of opx is characterized by a decrease of the assimilation rate and porosity reduction.As such reactive signatures have been reported from other oceanic gabbros, AFC processes in the lower oceanic crust are possibly widespread and may strongly contribute to the compositional systematic observed in global MORB.

Vertebrate assemblages from the early Late Cretaceous of southeastern Morocco: An overview

NASA Astrophysics Data System (ADS)

Cavin, L.; Tong, H.; Boudad, L.; Meister, C.; Piuz, A.; Tabouelle, J.; Aarab, M.; Amiot, R.; Buffetaut, E.; Dyke, G.; Hua, S.; Le Loeuff, J.

2010-07-01

Fossils of vertebrates have been found in great abundance in the continental and marine early Late Cretaceous sediments of Southeastern Morocco for more than 50 years. About 80 vertebrate taxa have so far been recorded from this region, many of which were recognised and diagnosed for the first time based on specimens recovered from these sediments. In this paper, we use published data together with new field data to present an updated overview of Moroccan early Late Cretaceous vertebrate assemblages. The Cretaceous series we have studied encompasses three Formations, the Ifezouane and Aoufous Formations, which are continental and deltaic in origin and are often grouped under the name "Kem Kem beds", and the Akrabou Formation which is marine in origin. New field observations allow us to place four recognised vertebrate clusters, corresponding to one compound assemblage and three assemblages, within a general temporal framework. In particular, two ammonite bioevents characterise the lower part of the Upper Cenomanian ( Calycoceras guerangeri Zone) at the base of the Akrabou Formation and the upper part of the Lower Turonian ( Mammites nodosoides Zone), that may extend into the Middle Turonian within the Akrabou Formation, and allow for more accurate dating of the marine sequence in the study area. We are not yet able to distinguish a specific assemblage that characterises the Ifezouane Formation when compared to the similar Aoufous Formation, and as a result we regard the oldest of the four vertebrate "assemblages" in this region to be the compound assemblage of the "Kem Kem beds". This well-known vertebrate assemblage comprises a mixture of terrestrial (and aerial), freshwater and brackish vertebrates. The archosaur component of this fauna appears to show an intriguingly high proportion of large-bodied carnivorous taxa, which may indicate a peculiar trophic chain, although collecting biases alter this palaeontological signal. A small and restricted assemblage, the OT1 assemblage, possibly corresponds to a specific, localised ecosystem within the Kem Kem beds compound assemblage. Microfossils and facies from the Aoufous Formation, corresponding to the top of the compound assemblage, provide evidence of extremely abiotic conditions (hypersalinity), and thus of great environmental instability. At the base of the Akrabou Formation the first ammonite bioevent, Neolobites, corresponds to the onset of the marine transgression in the early Late Cenomanian while the Agoult assemblage (Late Cenomanian?) contains a variety of small fish species that have Central Tethyan affinities. Finally, the youngest Mammites bioevent in the late Early Turonian corresponds to a deepening of the marine environment: this sequence is isochronous with the Goulmima assemblage, a diverse collection of fish and other marine taxa, and shows affinities with taxa from the South Atlantic, the Central Tethys and the Western Interior seaway of North America, and further highlights the biogeographical importance of these North African Late Cretaceous assemblages.

Phylogenetic and functional diversity in large carnivore assemblages

PubMed Central

Dalerum, F.

2013-01-01

Large terrestrial carnivores are important ecological components and prominent flagship species, but are often extinction prone owing to a combination of biological traits and high levels of human persecution. This study combines phylogenetic and functional diversity evaluations of global and continental large carnivore assemblages to provide a framework for conservation prioritization both between and within assemblages. Species-rich assemblages of large carnivores simultaneously had high phylogenetic and functional diversity, but species contributions to phylogenetic and functional diversity components were not positively correlated. The results further provide ecological justification for the largest carnivore species as a focus for conservation action, and suggests that range contraction is a likely cause of diminishing carnivore ecosystem function. This study highlights that preserving species-rich carnivore assemblages will capture both high phylogenetic and functional diversity, but that prioritizing species within assemblages will involve trade-offs between optimizing contemporary ecosystem function versus the evolutionary potential for future ecosystem performance. PMID:23576787

The reaction times of drivers aged 20 to 80 during a divided attention driving.

PubMed

Svetina, Matija

2016-11-16

Many studies addressing age-related changes in driving performance focus on comparing young vs. older drivers, which might lead to the biased conclusion that driving performance decreases only after the age of 65. The main aim of the study was to show that changes in driving performance are progressive throughout the adult years. A sample of 351 drivers aged 20 to 80 was assessed for their reaction times while driving between road cones. The drivers were exposed to 2 conditions varying according to task complexity. In single task conditions, the drivers performed a full stopping maneuver at a given signal; in dual task conditions, the drivers were distracted before the signal for stopping maneuver was triggered. Reaction times were compared across conditions and age groups. The results showed that both reaction times and variability of driving performance increased progressively between the ages of 20 and 80. The increase in both reaction times and variability was greater in the complex task condition. The high-performing quarter of elderly drivers performed equally well or better than younger drivers did. The data clearly supported the claim that driving performance changes steadily across age groups: both mean reaction time and interindividual variability progressively increase with age. In addition, a significant group of older drivers was identified who did not show the expected age-related decrease in performance. The findings have important implications, suggesting that in relation to driving, aging is a progressive phenomenon and may lead to variety of driving performance; age-related studies of driving performance should put more emphasis on investigating changes across the whole driver age range rather than only comparing younger and older drivers.

Impacts of fishing and environmental factors driving changes on littoral fish assemblages in a subtropical oceanic island

NASA Astrophysics Data System (ADS)

Sangil, Carlos; Martín-García, Laura; Hernández, José Carlos; Concepción, Laura; Fernández, Raúl; Clemente, Sabrina

2013-08-01

The structure of demersal fish assemblages of commercial interest was studied at 51 sites on La Palma Island (Canary Islands, northeastern Atlantic). On this island, demersal fish populations are limited and independent from other islands. As deep water separates the islands and the shallow sublittoral platforms are not continuous, adult inter-island migrations are not possible except between the islands of Lanzarote and Fuerteventura. Otherwise, each island functions as a closed system, and the status of an island fish assemblage depends on local environmental conditions and activities performed in situ by the islanders. These circumstances provide a unique opportunity to test the intrainsular variability of fish assemblages. With this background, environmental parameters, fishing pressure and distance to the MPA were considered to identify the main factors explaining the spatial variation of fish assemblages off La Palma Island. Twenty-six fish species were recorded, but 60% of the total fish biomass was represented by only five species (Sparisoma cretense, Pomadasys incisus, Canthidermis sufflamen, Diplodus cervinus cervinus and Bodianus scrofa). However, the structure of assemblages was heterogeneous in response to different variables and showed substantial spatial variation. The assemblages were strongly modified by the presence of upright seaweed cover, fishing activities, and certain environmental variables. Differences were more pronounced in species that occupied the higher trophic levels. The most disturbed assemblages were those located in areas with lower upright seaweed cover and with higher fishing pressure, whereas the best-preserved assemblages corresponded to sites with controlled fishing activities, located within the MPA.

A comparison of resident fish assemblages in managed and unmanaged coastal wetlands in North Carolina and South Carolina

USGS Publications Warehouse

Robinson, Kelly F.; Jennings, Cecil A.

2014-01-01

The dominant fish species within impounded coastal wetlands in the southeastern US may be different from the species that dominate natural marshes. We tested the hypothesis that resident fish assemblages inhabiting impounded coastal wetlands in South Carolina would differ from resident assemblages in natural marshes of the southeastern United States. We used rarefied species richness, Shannon's H' diversity,J' evenness, Morisita's index of similarity, and the percent similarity index to compare resident fish assemblages from two impoundments to 12 open-marsh resident fish assemblages from previously published studies in North and South Carolina. We used rotenone to sample fish assemblages in impoundments. The assemblages in natural marsh habitat had been sampled with rotenone and seines. We classified comparisons yielding a similarity index ≥0.50 as moderately similar and those with an index ≥0.75 as very similar. Fifty-three percent of the among-impoundment comparisons (Morisita's index) were at least moderately similar, whereas 7% of impoundment—natural marsh comparisons were moderately similar. A difference in tidal influence was the only parameter in the best-fitting model describing the observed Morisita's indices. The index of similarity decreased by 63% when tidal influence differed between compared assemblages. Species richness and diversity were greater in impoundments than natural marshes, but evenness was similar between habitat types. Our results support the hypothesis that resident fish assemblages in impounded wetlands and natural marshes are different, and suggest that a degree of tidal influence is the most important factor behind the difference.

Habitat characteristics affecting fish assemblages on a Hawaiian coral reef

USGS Publications Warehouse

Friedlander, A.M.; Parrish, J.D.

1998-01-01

Habitat characteristics of a reef were examined as potential influences on fish assemblage structure, using underwater visual census to estimate numbers and biomass of all fishes visible on 42 benthic transects and making quantitative measurements of 13 variables of the corresponding physical habitat and sessile biota. Fish assemblages in the diverse set of benthic habitats were grouped by detrended correspondence analysis, and associated with six major habitat types. Statistical differences were shown between a number of these habitat types for various ensemble variables of the fish assemblages. Overall, both for complete assemblages and for component major trophic and mobility guilds, these variables tended to have higher values where reef substratum was more structurally or topographically complex, and closer to reef edges. When study sites were separately divided into five depth strata, the deeper strata tended to have statistically higher values of ensemble variables for the fish assemblages. Patterns with depth varied among the various trophic and mobility guilds. Multiple linear regression models indicated that for the complete assemblages and for most trophic and mobility guilds, a large part of the variability for most ensemble variables was explained by measures of holes in the substratum, with important contributions from measured substratum rugosity and depth. A strong linear relationship found by regression of mean fish length on mean volume of holes in the reef surface emphasized the importance of shelter for fish assemblages. Results of this study may have practical applications in designing reserve areas as well as theoretical value in helping to explain the organization of reef fish assemblages.

Multilocus genotyping of Giardia duodenalis in Brazilian children.

PubMed

Scalia, Luana A M; Fava, Natália M N; Soares, Rodrigo M; Limongi, Jean E; da Cunha, Maria Júlia R; Pena, Isabella F; Kalapothakis, Evanguedes; Cury, Márcia C

2016-06-01

Giardia duodenalis is a parasite of several mammalian species, including humans, distributed worldwide. This research aimed to identify the molecular assemblages/sub-assemblages of G. duodenalis and to determine the intra-assemblage genetic variation of the different genes of assemblages A and B in pre-school children in the cities of Araguari and Uberlândia, Minas Gerais, Brazil. The molecular characterization followed β-giardin (bg), glutamate dehydrogenase (gdh) and triose phosphate isomerase (tpi) protocols. Of 226 stool samples, G. duodenalis cysts were found in 45 (19.9%). The tpi gene was amplified in 34 samples: 16 assemblage A, 14 B and four mixed samples A/B. The gdh gene was amplified in 32 samples, including 14 A, 16 B and two A/B. For the bg gene, 19 samples were sequenced: nine assemblage A, five B, three E, and two mixed, A/E and B/E. Animal-specific assemblage E were identified by bg, but were not confirmed for other genes. Twelve samples were characterized by full agreement of the three genes. Two new multilocus genotyping (MLGs) for assemblage A and two new MLGs for assemblage B were also described. These findings substantiate the importance of using more than one gene protocol since the sensitivity and genetic variability changes with the locus used.Access numbers: The GenBank access numbers for the nucleotide sequences reported in this article are: JQ794877-JQ794890, JX033113-JX033118. © The Author 2016. Published by Oxford University Press on behalf of Royal Society of Tropical Medicine and Hygiene. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Benthic Macroinvertebrate Assemblages in the Near Coastal Zone of Lake Erie

EPA Science Inventory

Benthic macroinvertebrate assemblages have been used as indicators of ecological condition because their responses integrate localized environmental conditions of the sediments and overlying water. Assemblages of benthic invertebrates in the near coastal region are of particular...

What makes African American health disparities newsworthy? An experiment among journalists about story framing.

PubMed

Hinnant, Amanda; Oh, Hyun Jee; Caburnay, Charlene A; Kreuter, Matthew W

2011-12-01

News stories reporting race-specific health information commonly emphasize disparities between racial groups. But recent research suggests this focus on disparities has unintended effects on African American audiences, generating negative emotions and less interest in preventive behaviors (Nicholson RA, Kreuter MW, Lapka C et al. Unintended effects of emphasizing disparities in cancer communication to African-Americans. Cancer Epidemiol Biomarkers Prev 2008; 17: 2946-52). They found that black adults are more interested in cancer screening after reading about the progress African Americans have made in fighting cancer than after reading stories emphasizing disparities between blacks and whites. This study builds on past findings by (i) examining how health journalists judge the newsworthiness of stories that report race-specific health information by emphasizing disparities versus progress and (ii) determining whether these judgments can be changed by informing journalists of audience reactions to disparity versus progress framing. In a double-blind-randomized experiment, 175 health journalists read either a disparity- or progress-framed story on colon cancer, preceded by either an inoculation about audience effects of such framing or an unrelated (i.e. control) information stimuli. Journalists rated the disparity-frame story more favorably than the progress-frame story in every category of news values. However, the inoculation significantly increased positive reactions to the progress-frame story. Informing journalists of audience reactions to race-specific health information could influence how health news stories are framed.

Improving progression and continuity from primary to secondary science: Pupils' reactions to bridging work

NASA Astrophysics Data System (ADS)

Braund, Martin; Hames, Vicky

2005-07-01

This article reports research from a project set up to implement ‘bridging work’ in science in England. Group interviews of 59 pupils in Year 6 (at the end of primary school) and 48 pupils in Year 7 (at beginning of secondary school) were carried out after pupils had completed bridging work. Twenty-six of this sample were the same pupils. Semi-structured interviews were carried out in groups to ascertain: their aspirations and fears concerning secondary science, their reactions to bridging work and their memories of investigations. Year 6 pupils were positive about studying science at secondary school and remained so after transfer. Pupils' reactions to bridging at both ages were very positive. Findings challenge recent critiques of bridging. The lack of progression in pupils' communication about the variables and findings from investigations suggest that the planned progression of work was not recognized by some teachers. Bridging work alone may not guarantee improved progression and continuity in science, but as part of a carefully planned and structured programme of collaboration it has merit.

Megabenthic assemblages in the continental shelf edge and upper slope of the Menorca Channel, Western Mediterranean Sea

NASA Astrophysics Data System (ADS)

Grinyó, Jordi; Gori, Andrea; Greenacre, Michael; Requena, Susana; Canepa, Antonio; Lo Iacono, Claudio; Ambroso, Stefano; Purroy, Ariadna; Gili, Josep-Maria

2018-03-01

Highly diverse megabenthic assemblages dominated by passive and active suspension feeders have been recently reported in shelf edge environments of the Mediterranean Sea. Due to their frequent association with species of commercial interest, these assemblages have been heavily impacted by fishing. The vulnerability and low resilience of these assemblages, composed mainly by long-living and slow-growing species, have motivated the implementation of management measures such as the restriction of bottom trawling, and the establishment of large protected areas embracing these environments. The Menorca Channel is one of such areas recently included in the European Union Natura 2000 network. Quantitative analysis of video transects recorded at 95-360 m depth by manned submersible and remotely operated vehicles were used to characterize megabenthic assemblages and to assess their geographical and bathymetric distribution. Six different assemblages were identified, mainly segregated by substrate type and depth. Hard substrates hosted coral gardens and sponge grounds, whereas soft sediments were mainly characterized by large extensions of the crinoid Leptometra phalangium and the brachiopod Gryphus vitreus. The good preservation of most of the observed assemblages is probably related to a low bottom trawling pressure, which mainly concentrates deeper on the adjacent continental slope. Because of their biological and ecological value, management and conservation measures need to be established to preserve these benthic assemblages.

Historical changes in Nebraska's lotic fish assemblages: Implications of anthropogenic alterations

USGS Publications Warehouse

Smith, Christopher D.; Fischer, Jesse R.; Quist, Michael C.

2014-01-01

The plains of midwestern North America have undergone significant anthropogenic alterations following European settlement with consequent effects to lotic fish assemblage structure. We examined trends in fish assemblage structure and function in Nebraska's lotic systems using site-specific, presence-absence data from historical (1939–1940) and contemporary surveys (2003–2005; n  =  183). Shifts in fish assemblage structure were characterized by declines of specialist species (e.g., western silvery minnow Hybognathus argyritis) and increases in nonnative, sport, and generalist species (e.g., common carp Cyprinus carpio). Our research illustrates differences between historical and contemporary surveys for both taxonomic and functional metrics. Changes in fish assemblage structure were correlated with a contemporary measure of anthropogenic alteration (Human Threat Index; HTI) and were most pronounced for large-scale threats (i.e., watershed HTI, overall HTI). The HTI is a composite index of cumulative anthropogenic alterations experienced by a stream system and was used to investigate broad-scale implications of anthropogenic activity on fish assemblage structure. Fish assemblages among sites were more similar in contemporary surveys than in historical surveys, such changes might indicate a homogenization of the fish assemblages. Losses of native species and increases in introduced species have occurred in Nebraska's lotic systems across a broad temporal span and shifts are likely related to high levels of human perturbation.

A real-time RT-PCR method to detect viable Giardia lamblia cysts in environmental waters.

PubMed

Baque, Robert H; Gilliam, Amy O; Robles, Liza D; Jakubowski, Walter; Slifko, Theresa R

2011-05-01

Currently, USEPA Method 1623 is the standard assay used for simultaneous detection of Giardia cysts and Cryptosporidium oocysts in various water matrices. However, the method is unable to distinguish between species, genotype, or to assess viability. Therefore, the objective of the present study was to address the shortcomings of USEPA Method 1623 by developing a novel molecular-based method that can assess viability of Giardia cysts in environmental waters and identify genotypes that pose a human health threat (assemblage groups A and B). Primers and TaqMan(®) probes were designed to target the beta-giardin gene in order to discriminate among species and assemblages. Viability was determined by detection of de-novo mRNA synthesis after heat induction. The beta-giardin primer/probe sets were able to detect and differentiate between Giardia lamblia assemblages A and B, and did not detect Giardia muris (mouse species) or G. lamblia assemblages C, D, E and F (non-human), with the exception of Probe A which did detect G. lamblia assemblage F DNA. Additionally, DNA or cDNA of other waterborne organisms were not detected, suggesting that the method is specific to Giardia assemblages. Assay applicability was demonstrated by detection of viable G. lamblia cysts in spiked (assemblage B) and unspiked (assemblage A and B) reclaimed water samples. Copyright © 2011 Elsevier Ltd. All rights reserved.

Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels

USGS Publications Warehouse

Reinhold, Ann Marie; Bramblett, Robert G.; Zale, Alexander V.; Poole, Geoffrey C.; Roberts, David W.

2017-01-01

The alteration of rivers by anthropogenic bank stabilization to prevent the erosion of economically valuable lands and structures has become commonplace. However, such alteration has ambiguous consequences for fish assemblages, especially in large rivers. Because most large, temperate rivers have impoundments, it can be difficult to separate the influences of bank stabilization structures from those of main-stem impoundments, especially because both stabilization structures and impoundments can cause side-channel loss. Few large rivers are free flowing and retain extensive side channels, but the Yellowstone River (our study area) is one such river. We hypothesized that in this river (1) bank stabilization has changed fish assemblage structure by altering habitats, (2) side-channel availability has influenced fish assemblage structure by providing habitat heterogeneity, and (3) the influences of bank stabilization and side channels on fish assemblages were spatially scale dependent. We developed a spatially explicit framework to test these hypotheses. Fish assemblage structure varied with the extent of bank stabilization and the availability of side channels; however, not all assemblage subsets were influenced. Nevertheless, bank stabilization and side channels had different and sometimes opposite influences on the fish assemblage. The effects of side channels on fish were more consistent and widespread than those of bank stabilization; the catches of more fishes were positively correlated with side-channel availability than with the extent of bank stabilization. The influences of bank stabilization and side channels on the relative abundances of fish also varied, depending on species and river bend geomorphology. The variation in river morphology probably contributed to the assemblage differences between stabilized and reference river bends; stabilized alluvial pools were deeper than reference alluvial pools, but the depths of stabilized and reference bluff pools did not differ. The strengths of the relationships among fish assemblages, bank stabilization, and side channels were spatially scale dependent; optimum spatial scales ranged from less than 200 m to 3,200 m up- and downstream, suggesting that bank stabilization and side channels influenced fish assemblages across multiple spatial scales.

Petrology and fluid inclusions of garnet-clinopyroxene rocks from the Gondwana suture zone in southern India: Implications for prograde high-pressure metamorphism

NASA Astrophysics Data System (ADS)

Tsunogae, T.

2012-04-01

The Palghat-Cauvery Suture Zone (PCSZ) in the southern granulite terrane, India, which separates Pan-African granulite blocks (e.g., Madurai and Trivandrum Blocks) to the south and Archean terrane (e.g., Salem Block and Dharwar Craton) to the north is regarded as a major suture zone in the Gondwana collisional orogeny. It probably continues westwards to the Betsimisaraka suture in Madagascar, and eastwards into Sri Lanka and possibly into Antarctica. The available geochronological data including U-Pb zircon and EPMA monazite ages indicate that the rocks along the PCSZ underwent an episode of high-grade metamorphism at ca. 530 Ma that broadly coincides with the time of final assembly of the Gondwana supercontinent. Recent investigations on high-grade metamorphic rocks in this region have identified several new occurrences of garnet-clinopyroxene rocks and associated meta-gabbros from Perundurai, Paramati, Aniyapuram, Vadugappatti, and Mahadevi areas in Namakkal region within the central domain of the PCSZ. They occur as elongated boudins of 1 m to 1 km in length within hornblende-biotite orthogneiss. The garnet-clinopyroxene mafic granulites contain coarse-grained (up to several cm) garnet (Alm30-50 Pyr30-40 Grs10-20) and clinopyroxene (XMg = 0.70-0.85) with minor pargasite, plagioclase (An30-40), orthopyroxene (hypersthene), and rutile. Garnet and clinopyroxene are both subidioblastic and contain few inclusions of clinopyroxene (in garnet) and plagioclase. Orthopyroxene occur only as Opx + Pl symplectite between garnet and clinopyroxene in almost all the localities, suggesting the progress of decompressional reaction: Grt + Cpx + Qtz => Opx + Pl, which is a dominant texture in the PCSZ. The prograde mineral assemblage of the rocks is therefore inferred to be Grt + Cpx + Qtz, although quartz was probably totally consumed by the progress of the reaction. The metamorphic P-T calculations using Grt-Cpx-Pl-Qtz geothermobarometers yield T = 850-900°C and P >13 kbar, which is consistent with the occurrence of high-pressure Mg-rich staurolite in Mg-Al-rich rocks from this region. Fluid inclusion study of some garnet-clinopyroxene rock samples identified CO2-rich fluid inclusions trapped as primary phases within garnet, suggesting that prograde high-pressure metamorphism was dominated by CO2-rich fluids. The results therefore confirmed that the PCSZ underwent regional dry high-pressure metamorphism followed by the peak ultrahigh-temperature event probably associated with the continent-continent collisional and suturing history along the PCSZ.

Pop-It Beads to Introduce Catalysis of Reaction Rate and Substrate Depletion Effects

ERIC Educational Resources Information Center

Gehret, Austin U.

2017-01-01

A kinesthetic classroom activity was designed to help students understand enzyme activity and catalysis of reaction rate. Students served the role of enzymes by manipulating Pop-It Beads as the catalytic event. This activity illuminates the relationship between reaction rate and reaction progress by allowing students to experience first-hand the…

THE INFLUENCE OF MINERAL REACTIONS ON THE ENVIRONMENTAL FATE OF METALS IN SOILS AND SEDIMENTS

EPA Science Inventory

Significant progress has been made in elucidating sorption reactions that control the partitioning of metals from solution to mineral surfaces in contaminated soil/sediment systems. Surface complexation models have been developed to quantify the forward reaction, however, these ...

Molecular Origin of Color Variation in Firefly (Beetle) Bioluminescence: A Chemical Basis for Biological Imaging.

PubMed

Hirano, Takashi

2016-01-01

Firefly shows bioluminescence by "luciferin-luciferase" (L-L) reaction using luciferin, luciferase, ATP and O2. The chemical photon generation by an enzymatic reaction is widely utilized for analytical methods including biological imaging in the life science fields. To expand photondetecting analyses with firefly bioluminescence, it is important for users to understand the chemical basis of the L-L reaction. In particular, the emission color variation of the L-L reaction is one of the distinguishing characteristics for multicolor luciferase assay and in vivo imaging. From the viewpoint of fundamental chemistry, this review explains the recent progress in the studies on the molecular mechanism of emission color variation after showing the outline of the reaction mechanism of the whole L-L reaction. On the basis of the mechanism, the progresses in organic synthesis of luciferin analogs modulating their emission colors are also presented to support further developments of red/near infrared in vivo biological imaging utility of firefly bioluminescence.

Fish assemblage responses to forest cover

Treesearch

Chris L. Burcher; Matthew E. McTammany; E. Fred Benfield; Gene S. Helfman

2008-01-01

We investigated whether fish assemblage structure in southern Appalachian streams differed with historical and contemporary forest cover. We compared fish assemblages in 2nd?4th order streams draining watersheds that had increased forest cover between 1950 and 1993 (i.e., reforesting watersheds).

Occurrence and diversity of Giardia duodenalis assemblages in livestock in the UK.

PubMed

Minetti, C; Taweenan, W; Hogg, R; Featherstone, C; Randle, N; Latham, S M; Wastling, J M

2014-12-01

Giardia duodenalis is a common intestinal parasite in humans and a wide range of livestock species. It is a genetically heterogeneous parasite that has been characterized in seven distinct genetic assemblages or cryptic species, and molecular markers can be used to differentiate both animal-specific and potentially zoonotic genotypes. Little is known about G. duodenalis and the range of assemblages occurring in domestic livestock species in the UK. Here, we present data on the occurrence and molecular diversity of G. duodenalis detected in the faeces or large intestinal contents of cattle, sheep, pigs, goats and camelids from farms in the north-west of England. Both healthy and clinically diseased animals were included in the survey. The presence of Giardia spp. and assemblages was determined by sequencing of the small-subunit ribosomal RNA gene. The potential association of infection with various clinical and epidemiological parameters was studied in cattle using both univariate and multivariate analyses. Giardia spp. were detected in 127 (34.3%) of the 370 animals tested. G. duodenalis assemblage E was found to be predominant in cattle and sheep, followed by assemblage A. Mixed infections with assemblages A and E were also detected. Interestingly, some cattle, sheep and pigs were found to be infected with more unexpected assemblages (C, D, F). Pre-weaned calves were more likely to test positive than adult animals, but no association between the occurrence of overt intestinal disease and G. duodenalis infection was detected. The common occurrence of assemblage A and the finding of unusual assemblages in atypical hosts suggest that in future, a multilocus analysis should be used to confirm the actual diversity of G. duodenalis in livestock and the presence of potentially zoonotic genotypes. These data also suggest that there is a need to re-evaluate the clinical significance of G. duodenalis infection in livestock. © 2014 The Authors. Transboundary and Emerging Diseases Published by Blackwell Verlag GmbH.

Broad-Scale Patterns of Late Jurassic Dinosaur Paleoecology

PubMed Central

Noto, Christopher R.; Grossman, Ari

2010-01-01

Background There have been numerous studies on dinosaur biogeographic distribution patterns. However, these distribution data have not yet been applied to ecological questions. Ecological studies of dinosaurs have tended to focus on reconstructing individual taxa, usually through comparisons to modern analogs. Fewer studies have sought to determine if the ecological structure of fossil assemblages is preserved and, if so, how dinosaur communities varied. Climate is a major component driving differences between communities. If the ecological structure of a fossil locality is preserved, we expect that dinosaur assemblages from similar environments will share a similar ecological structure. Methodology/Principal Findings This study applies Ecological Structure Analysis (ESA) to a dataset of 100+ dinosaur taxa arranged into twelve composite fossil assemblages from around the world. Each assemblage was assigned a climate zone (biome) based on its location. Dinosaur taxa were placed into ecomorphological categories. The proportion of each category creates an ecological profile for the assemblage, which were compared using cluster and principal components analyses. Assemblages grouped according to biome, with most coming from arid or semi-arid/seasonal climates. Differences between assemblages are tied to the proportion of large high-browsing vs. small ground-foraging herbivores, which separates arid from semi-arid and moister environments, respectively. However, the effects of historical, taphonomic, and other environmental factors are still evident. Conclusions/Significance This study is the first to show that the general ecological structure of Late Jurassic dinosaur assemblages is preserved at large scales and can be assessed quantitatively. Despite a broad similarity of climatic conditions, a degree of ecological variation is observed between assemblages, from arid to moist. Taxonomic differences between Asia and the other regions demonstrate at least one case of ecosystem convergence. The proportion of different ecomorphs, which reflects the prevailing climatic and environmental conditions present during fossil deposition, may therefore be used to differentiate Late Jurassic dinosaur fossil assemblages. This method is broadly applicable to different taxa and times, allowing one to address questions of evolutionary, biogeographic, and climatic importance. PMID:20838442

Broad-scale patterns of late jurassic dinosaur paleoecology.

PubMed

Noto, Christopher R; Grossman, Ari

2010-09-03

There have been numerous studies on dinosaur biogeographic distribution patterns. However, these distribution data have not yet been applied to ecological questions. Ecological studies of dinosaurs have tended to focus on reconstructing individual taxa, usually through comparisons to modern analogs. Fewer studies have sought to determine if the ecological structure of fossil assemblages is preserved and, if so, how dinosaur communities varied. Climate is a major component driving differences between communities. If the ecological structure of a fossil locality is preserved, we expect that dinosaur assemblages from similar environments will share a similar ecological structure. This study applies Ecological Structure Analysis (ESA) to a dataset of 100+ dinosaur taxa arranged into twelve composite fossil assemblages from around the world. Each assemblage was assigned a climate zone (biome) based on its location. Dinosaur taxa were placed into ecomorphological categories. The proportion of each category creates an ecological profile for the assemblage, which were compared using cluster and principal components analyses. Assemblages grouped according to biome, with most coming from arid or semi-arid/seasonal climates. Differences between assemblages are tied to the proportion of large high-browsing vs. small ground-foraging herbivores, which separates arid from semi-arid and moister environments, respectively. However, the effects of historical, taphonomic, and other environmental factors are still evident. This study is the first to show that the general ecological structure of Late Jurassic dinosaur assemblages is preserved at large scales and can be assessed quantitatively. Despite a broad similarity of climatic conditions, a degree of ecological variation is observed between assemblages, from arid to moist. Taxonomic differences between Asia and the other regions demonstrate at least one case of ecosystem convergence. The proportion of different ecomorphs, which reflects the prevailing climatic and environmental conditions present during fossil deposition, may therefore be used to differentiate Late Jurassic dinosaur fossil assemblages. This method is broadly applicable to different taxa and times, allowing one to address questions of evolutionary, biogeographic, and climatic importance.

Benthic foraminifera or Ostracoda? Comparing the accuracy of palaeoenvironmental indicators from a Pleistocene lagoon of the Romagna coastal plain (Italy)

NASA Astrophysics Data System (ADS)

Barbieri, Giulia; Vaiani, Stefano Claudio

2018-01-01

Integrated analyses of multiple groups of microfossils are frequently performed to unravel the palaeoenvironmental evolution of subsurface coastal successions, where the complex interaction among several palaeoecological factors can be detected with benthic assemblages. This work investigates the palaeoenvironmental resolution potential provided by benthic foraminifera and ostracoda within a Pleistocene lagoonal succession of the Romagna coastal plain (northern Italy). Quantitative approaches and statistical techniques have been applied to both groups in order to understand the main factors that controlled the composition of assemblages and compare the palaeoecological record provided by single fossil groups. The two faunal groups are characterized by the high dominance of opportunistic species (Ammonia tepida-Ammonia parkinsoniana and Cyprideis torosa); however, detailed palaeoecological information is inferred from less common taxa. Benthic foraminiferal assemblages are mainly determined by the frequencies of abnormal individuals and species related to high concentrations of organic matter, showing two assemblages: a stressed assemblage, consistent with a brackish-water environment subject to salinity and oxygen fluctuations, and an unstressed assemblage, which indicates more stable conditions. Despite the lower number of species, ostracoda show more significant differences in terms of species composition and ecological structure between their three assemblages, formed in response to a salinity gradient and indicative of inner, central, and outer lagoon conditions. The stratigraphic distribution of ostracod assemblages shows a general transgressive-regressive trend with minor fluctuations, whereas benthic foraminifera highlight the presence of a significant palaeoenvironmental stress. In this case, the higher abundance along the stratigraphic succession, the higher differentiation of the assemblages, and the well-defined relationship between taxa and ecological parameters determine Ostracoda as the most reliable fossil group for precise palaeoenvironmental reconstructions. Nevertheless, benthic foraminifera indicate palaeoenvironmental stress and can be used to refine the environmental interpretation in the presence of monospecific ostracod assemblages.

Body-drug assemblages: theorizing the experience of side effects in the context of HIV treatment.

PubMed

Gagnon, Marilou; Holmes, Dave

2016-10-01

Each of the antiretroviral drugs that are currently used to stop the progression of HIV infection causes its own specific side effects. Despite the expansion, multiplication, and simplification of treatment options over the past decade, side effects continue to affect people living with HIV. Yet, we see a clear disconnect between the way side effects are normalized, routinized, and framed in clinical practice and the way they are experienced by people living with HIV. This paper builds on the premise that new approaches are needed to understand side effects in a manner that is more reflective of the subjective accounts of people living with HIV. Drawing on the work of Deleuze and Guattari, it offers an original application of the theory of 'assemblage'. This theory offers a new way of theorizing side effects, and ultimately the relationship between the body and antiretroviral drugs (as technologies). Combining theory with examples derived from empirical data, we examine the multiple ways in which the body connects not only to the drugs but also to people, things, and systems. Our objective is to illustrate how this theory dares us to think differently about side effects and allows us to originally (re)think the experience of taking antiretroviral drugs. © 2016 The Authors. Nursing Philosophy Published by John Wiley & Sons Ltd.

Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia)

PubMed Central

Sato, Yui; Bourne, David G.; Willis, Bette L.

2009-01-01

Recurring summer outbreaks of black band disease (BBD) on an inshore reef in the central Great Barrier Reef (GBR) constitute the first recorded BBD epizootic in the region. In a 2.7 year study of 485 colonies of Montipora species, BBD affected up to 10 per cent of colonies in the assemblage. Mean maximum abundance of BBD reached 16±6 colonies per 100 m2 (n=3 quadrats, each 100 m2) in summer, and decreased to 0–1 colony per 100 m2 in winter. On average, BBD lesions caused 40 per cent tissue loss and 5 per cent of infections led to whole colony mortality. BBD reappearance on previously infected colonies and continuous tissue loss after the BBD signs had disappeared suggest that the disease impacts are of longer duration than indicated by the presence of characteristic signs. Rates of new infections and linear progression of lesions were both positively correlated with seasonal fluctuations in sea water temperatures and light, suggesting that seasonal increases in these environmental parameters promote virulence of the disease. Overall, the impacts of BBD are greater than previously reported on the GBR and likely to escalate with ocean warming. PMID:19419991

Evidence for deep-water evaporite deposition in the Miocene Kareem Formation, Gemsa basin, eastern Egypt

DOE Office of Scientific and Technical Information (OSTI.GOV)

May, J.A.; Stonecipher, S.A.; Steinmetz, J.C.

1991-03-01

The correct interpretation of intercalated Miocene siliciclastics and evaporites of Gemsa basin is crucial for understanding early rift tectonics of the Gulf of Suez, pinpointing the timing of isolation of the Gulf from the Mediterranean, and developing exploration plays. Evaporites of the Kareem Formation comprise celestites and massive, 'chicken-wire,' and laminated anhydrites. Although previously interpreted as sabkha deposits; sedimentologic, petrographic, and paleontologic analyses indicate these evaporites more likely formed in a submarine setting. Marls that encase the evaporites contain a diverse and abundant assemblage of nannoplankton, planktonic foraminifera, diatoms, pteropods, and fish scales indicative of basinal deposition. Associated turbidites alsomore » denote deep-water sedimentation. The paucity of benthic diatoms and foraminifera, plus the presence of unburrowed shales, phosphate nodules, early ferroan carbonate cements, and authigenic pyrite, suggest periodic anoxic, or at least disaerobic, bottom waters. These sequences probably represent partial isolation of the Gulf of Suez by middle Miocene, producing periodic basin restriction and evaporative drawdown. Episodes of increasing salinity likely caused the progressive decreases in foram abundance and diversity in marls beneath the anhydrites, culminating in subaqueous evaporite formation. Diverse, indigenous nannoplankton assemblages from shale seams within the anhydrites suggest Gemsa basin was stratified; shallow open-marine conditions coexisted with anhydrite crystallization from deeper hypersaline waters.« less

The Rise of Jaw Protrusion in Spiny-Rayed Fishes Closes the Gap on Elusive Prey.

PubMed

Bellwood, David R; Goatley, Christopher H R; Bellwood, Orpha; Delbarre, Daniel J; Friedman, Matt

2015-10-19

Jaw protrusion is one of the most important innovations in vertebrate feeding over the last 400 million years [1, 2]. Protrusion enables a fish to rapidly decrease the distance between itself and its prey [2, 3]. We assessed the evolution and functional implications of jaw protrusion in teleost fish assemblages from shallow coastal seas since the Cretaceous. By examining extant teleost fishes, we identified a robust morphological predictor of jaw protrusion that enabled us to predict the extent of jaw protrusion in fossil fishes. Our analyses revealed increases in both average and maximum jaw protrusion over the last 100 million years, with a progressive increase in the potential impact of fish predation on elusive prey. Over this period, the increase in jaw protrusion was initially driven by a taxonomic restructuring of fish assemblages, with an increase in the proportion of spiny-rayed fishes (Acanthomorpha), followed by an increase in the extent of protrusion within this clade. By increasing the ability of fishes to catch elusive prey [2, 4], jaw protrusion is likely to have fundamentally changed the nature of predator-prey interactions and may have contributed to the success of the spiny-rayed fishes, the dominant fish clade in modern oceans [5]. Copyright © 2015 Elsevier Ltd. All rights reserved.

Structure of Mesophotic Reef Fish Assemblages in the Northwestern Hawaiian Islands

PubMed Central

Kosaki, Randall K.; Wagner, Daniel; Kane, Corinne

2016-01-01

Mesophotic coral ecosystems (MCEs) support diverse communities of marine organisms with changes in community structure occurring along a depth gradient. In recent years, MCEs have gained attention due to their depths that provide protection from natural and anthropogenic stressors and their relative stability over evolutionary time periods, yet ecological structures of fish assemblages in MCEs remain largely un-documented. Here, we investigated composition and trophic structure of reef fish assemblages in the Northwestern Hawaiian Islands (NWHI) along a depth gradient from 1 to 67 m. The structure of reef fish assemblages as a whole showed a clear gradient from shallow to mesophotic depths. Fish assemblages at mesophotic depths had higher total densities than those in shallower waters, and were characterized by relatively high densities of planktivores and invertivores and relatively low densities of herbivores. Fishes that typified assemblages at mesophotic depths included six species that are endemic to the Hawaiian Islands. The present study showed that mesophotic reefs in the NWHI support unique assemblages of fish that are characterized by high endemism and relatively high densities of planktivores. Our findings underscore the ecological importance of these undersurveyed ecosystems and warrant further studies of MCEs. PMID:27383614

Multilocus sequence analysis of Giardia spp. isolated from patients with diarrhea in Austria.

PubMed

Lee, Mellesia F; Auer, Herbert; Lindo, John F; Walochnik, Julia

2017-02-01

Giardia duodenalis is a protozoan parasite causing intestinal infections in a wide range of mammals. Two distinct assemblages, A and B, infect humans predominantly; however, both are believed to be generally zoonotic. Giardia strains associated with infections in Austria have not been investigated at the molecular level. In this study, 65 human stool samples microscopically positive for Giardia spp. were subjected to DNA isolation and nested PCR targeting fragments of the glutamate dehydrogenase (gdh), triose phosphate isomerase (tpi), and beta-gardin (bg) genes. A total of 52 samples were successfully analyzed using PCR and DNA sequencing. Assemblage B was detected most frequently and accounted for 65.4% (34/52) of infections, while Assemblage A accounted for 34.6% (18/52). There was a high level of genetic diversity among the isolates with 46.2% designated as sub-assemblage BIV (24/52), 25% sub-assemblage AII (13/52), 19.2% sub-assemblage BIII (10/52), and 9.6% sub-assemblage AI (5/52). No mixed infections were detected. The results suggest that the majority of infections were imported and that endemic anthroponotic transmission plays a minor role in Austria.

Predictions of hydrothermal alteration within near-ridge oceanic crust from coordinated geochemical and fluid flow models

USGS Publications Warehouse

Wetzel, L.R.; Raffensperger, Jeff P.; Shock, E.L.

2001-01-01

Coordinated geochemical and hydrological calculations guide our understanding of the composition, fluid flow patterns, and thermal structure of near-ridge oceanic crust. The case study presented here illustrates geochemical and thermal changes taking place as oceanic crust ages from 0.2 to 1.0 Myr. Using a finite element code, we model fluid flow and heat transport through the upper few hundred meters of an abyssal hill created at an intermediate spreading rate. We use a reaction path model with a customized database to calculate equilibrium fluid compositions and mineral assemblages of basalt and seawater at 500 bars and temperatures ranging from 150 to 400??C. In one scenario, reaction path calculations suggest that volume increases on the order of 10% may occur within portions of the basaltic basement. If this change in volume occurred, it would be sufficient to fill all primary porosity in some locations, effectively sealing off portions of the oceanic crust. Thermal profiles resulting from fluid flow simulations indicate that volume changes along this possible reaction path occur primarily within the first 0.4 Myr of crustal aging. ?? 2001 Elsevier Science B.V. All rights reserved.

Experimental investigation of the stability of Fe-rich carbonates in the lower mantle

NASA Astrophysics Data System (ADS)

Boulard, E.; Menguy, N.; Auzende, A.; Benzerara, K.; Bureau, H.; Antonangeli, D.; Corgne, A.; Morard, G.; Siebert, J.; Perrillat, J.; Guyot, F. J.; Fiquet, G.

2011-12-01

Carbonates are the main C-bearing minerals that are transported deep in the Earth's mantle via subduction of the oceanic lithosphere [1]. The fate of carbonates at mantle conditions plays a key role in the deep carbon cycle. Decarbonation, melting or reduction of carbonates will affect the extent and the way carbon is recycled into the deep Earth. To clarify the fate of carbonates in the deep mantle, high-pressure high-temperature experiments were carried out up to 105 GPa and 2850 K on oxide assemblages of (Mg,Fe)O + CO2. The presence of Fe(II) in starting materials induces redox reactions from which Fe(II) is oxidized and a part of the carbon is reduced. This leads to an assemblage of magnetite, diamonds, and carbonates or, pressure depending, their newly discovered Fe(III)-bearing high-pressure polymorphs based on a silicate-like chemistry with tetrahedrally coordinated carbon [2]. Our results show the possibility for carbon to be recycled in the lowermost mantle and provide evidence of a possible coexistence of reduced and oxidized carbon at lower mantle conditions. [1] Sleep, N. H., and K. Zahnle (2001) J. Geophys. Res.-Planets 106(E1), 1373-1399. [2] Boulard et al. (2011) PNAS, 108, 5184-5187.

Effects of contrasting upwelling downwelling on benthic foraminiferal distribution in the Ría de Vigo (NW Spain)

NASA Astrophysics Data System (ADS)

Diz, Paula; Francés, Guillermo; Rosón, Gabriel

2006-04-01

Live benthic foraminifera in the superficial sediments from the muddy central axis of the Ría de Vigo were examined under two contrasting hydrographic conditions: downwelling and upwelling. During downwelling conditions the abundance of benthic foraminifera does not show large differences between sites with different organic carbon contents. The arrival of labile organic carbon to the seafloor delivered during upwelling events causes an increase in the abundance of the most significant species and the appearance of new species in the life assemblage. This suggests that benthic foraminiferal faunas strongly depend on high quality organic carbon supply and the sedimentary organic carbon is not a good indicator of food availability to benthic foraminifera. The response of benthic foraminifera to phytoplankton blooms differs between outer and inner sites. In outer and middle areas benthic foraminiferal assemblages show quick population growth in reaction to phytoplankton blooms (r-strategists), whereas in inner sites the most abundant species displays both growth and reproduction (k-strategists). It is suggested that r-strategy results of adaptation to perturbations on short time-scales (downwelling/upwelling cycles) under favourable microenvironmental conditions, while the k-strategy represents the adaptation to long term perturbations, such as relatively low oxygen concentrations and/or reducing microenvironmental conditions in the sediment.

Geochemistry, mineralogy, and chemical modeling of the acid crater lake of Kawah Ijen Volcano, Indonesia

NASA Astrophysics Data System (ADS)

Delmelle, Pierre; Bernard, Alain

1994-06-01

The Kawah Ijen volcano—with a record of phreatic eruptions—has its 1000 m wide crater filled with a lake that has existed for at least one century. At present, the lake waters are hot ( T ≈ 37° C), strongly mineralized (TDS = 105 g/L) and extremely acidic ( pH ≈ 0.4). By its volume, the Javanese lake is probably the largest accumulation in the world of such acidic waters. Mineralogy of the suspended solids within the lake waters suggests that concentrations of Si, Ca, Ti, and Ba are controlled by precipitation of silica, gypsum, anatase, and barite. Lake sediment is composed of chemical precipitates with composition similar to the suspended solids. Thermodynamic calculations predict that the lake waters have reached equilibrium with respect to α-cristobalite, barite, gypsum, anglesite, celestite, and amorphous silica, in agreement with the analytical observations. Significant concentrations of ferric iron suggest that the current lake waters are fairly oxidized. Sulfides are absent in the water column but are always present in the native S spherules that form porous aggregates which float on the lake. The presence of native S provides direct evidence of more reduced conditions at the lake floor where H 2S is probably being injected into the lake. With progressive addition of H 2S to the acid waters, native S, pyrite, and enargite are theoretically predicted to be saturated. Reactions between upward streaming H 2S-bearing gases discharged by subaqueous fumaroles, and metals dissolved in the acidic waters could initiate precipitation of these sulfides. A model of direct absorption of hot magmatic gases into cool water accounts for the extreme acidity of the crater lake. Results show that strongly acidic, sulfate-rich solutions are formed under oxidizing conditions at high gas/water ratios. Reactions between the acidic fluids and the Ijen andesite were modeled to account for elevated cation concentrations in lake water. Current concentrations of conservative rockforming elements are produced by dissolution of approximately 60 g of andesite per kg of acid solution. Complete neutralization of the acid lake waters by reaction with the wallrock produces a theoretical alteration assemblage equivalent to that observed in volcano-hosted, acid-sulfate epithermal ore deposits.

Last glacial to Holocene productivity and oxygen changes based on benthic foraminiferal assemblages from the western Alboran Sea

NASA Astrophysics Data System (ADS)

Pérez-Asensio, José N.; Cacho, Isabel; Frigola, Jaime; Pena, Leopoldo D.; Asioli, Alessandra; Kuhlmann, Jannis; Huhn, Katrin

2016-04-01

Late glacial to Holocene productivity and oxygen changes in the Alboran Sea were investigated analyzing benthic foraminiferal assemblages from the marine sediment core HER-GC-UB06. This 255 cm-long core was recovered at 946 m water depth in the Alboran Sea (western Mediterranean Sea) and includes homogeneous greyish clays from the last 23 ka. Nowadays, the core site is bathed by the Western Mediterranean Deep Water (WMDW) and near the overlying Levantine Intermediate Water (LIW). Benthic foraminifera from the size fraction >63 μm were identified at species level and counted until reaching at least 300 individuals. Q-mode principal component analyses (PCA) was performed to establish benthic foraminiferal assemblages. In addition, benthic foraminifera were classified according to their microhabitat preferences. Diversity was assessed with several diversity indices. Four benthic foraminiferal assemblages have been identified along the core. The distribution of these assemblages records changes in productivity and oxygen conditions during the last 23 ka. The last glacial and deglaciation interval, 23-12.5 ka, shows low diversity and is characterized by the Nonionella iridea assemblage, which includes Cassidulina laevigata, Bolivina dilatata, Nonionoides turgida and Cibicides pachyderma as secondary taxa. This assemblage can be interpreted as a moderately oxygenated mesotrophic environment with episodic pulses of fresh organic matter. Although general mesotrophic conditions prevail, the Last Glacial Maximum shows a more oligotrophic and better oxygenated setting as suggested by higher abundance of epifaunal-shallow infaunal taxa. In contrast, along the Bølling-Allerød eutrophic conditions with higher productivity and lower oxygenation are recorded by a deep infaunal taxa maximum. During the Younger Dryas (YD) and the earliest Holocene (12.5-10.5 ka), the Bolivina dilatata assemblage dominates coinciding with a lower diversity, especially during the YD. This species and the additional taxa of the assemblage (Bolivina spathulata, Bolivina subspinescens, Bulimina marginata, Bolivina variabilis and Uvigerina peregrina) also thrive in mesotrophic environments with fresh organic matter supply and moderate oxygen content. The lower part of the early Holocene (10.5-7.3 ka) is dominated by the Cassidulina obtusa assemblage including Bolivina subspinescens, Bolivina variabilis, Bulimina marginata, Gyroidina altiformis, Nonionella iridea and Quinqueloculina sp. as associated taxa. A highly diverse mesotrophic setting with slightly higher oxygenation can be inferred for this assemblage. This is supported by the higher abundance of epifaunal-shallow infaunal taxa and the presence of G. altiformis and Quinqueloculina sp. Finally, the highly diverse Alabaminella weddellensis assemblage occurs along the upper part of the core (7.3-0 ka) encompassing the upper early Holocene and late Holocene. Additional species of this assemblages are Uvigerina mediterranea, Melonis barleeanus, Cassidulina laevigata, Cassidulina obtusa and Uvigerina peregrina. This assemblage suggests mesotrophic conditions with a more continuous organic matter supply as pointed out by the occurrence of U. mediterranea and the intermediate infaunal M. barleeanus that can feed from more degraded organic matter. The onset of this assemblage around 7.3 ka might be related to the establishment of the semi-permanent productive 'Malaga cell" dated at 7.7 ka.

In situ sulfonation of alkyl benzene self-assembled monolayers: product distribution and kinetic analysis.

PubMed

Katash, Irit; Luo, Xianglin; Sukenik, Chaim N

2008-10-07

The sulfonation of aromatic rings held at the surface of a covalently anchored self-assembled monolayer has been analyzed in terms of the rates and isomer distribution of the sulfonation process. The observed product distributions are similar to those observed in solution, though the data obtained suggest that the reaction rate and the ortho/para product ratio depend on the length of the tether anchoring the aryl ring to the monolayer interface. It was also found that the interface becomes progressively more disordered and the observed reaction rates decrease as the reaction progresses. There is no evidence for a bias in favor of reaction at the more exposed para-position nor is there evidence for an enhanced reaction rate due to the increased disorder and/or improved wetting as the reaction proceeds. This is the first detailed study of electrophilic aromatic substitution at a monolayer interface. It introduces new approaches to the spectroscopic analysis of reactions on self-assembled monolayers and provides a new general approach to the analysis of isomeric product distribution in such a setting.

ELECTROFISHING IN BOATABLE RIVERS: DOES SAMPLING DESIGN AFFECT BIOASSESSMENT METRICS?

EPA Science Inventory

The accurate bioassessment of boatable rivers using fish assemblage data requires that a representative sample of the assemblage be collected. Data were collected using an electrofishing design that permitted comparisons of the effects of designs and distances on fish assemblage ...

SIMULATING FISH ASSEMBLAGE DYNAMICS IN RIVER NETWORKS

EPA Science Inventory

My recently retired colleague, Joan Baker, and I have developed a prototype computer simulation model for studying the effects of human and non-human alterations of habitats and species availability on fish assemblage populations. The fish assemblage model, written in R, is a sp...

High resolution, low cost solar cell contact development. Quarterly technical progress and schedule report, September 28, 1980

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mardesich, N.

The scope of the contract covers the development and evaluation of forming solar cell collector grid contacts by the MIDFILM process. This is a proprietary process developed by the Ferro Corporation which is a subcontractor for the program. The MIDFILM process attains line resolution characteristics of photoresist methods with processing related to screen printing. The surface to be processed is first coated with a thin layer of photoresist material. Upon exposure to ultraviolet light through a suitable mask, the resist in the non-pattern area cross-links and becomes hard. The unexposed pattern areas remain tacky. The conductor material is applied inmore » the form of a dry mixture of metal and frit particles which adhere to the tacky pattern area. The assemblage is then fired to ash the photopolymer and sinter the fritted conductor powder. Effort was concentrated during this period on the establishment, optimization and identification of problem areas of the MIDFILM process. Progress is reported. (WHK)« less

CI chondrite-like clasts in the Nilpena polymict ureilite - Implications for aqueous alteration processes in CI chondrites

NASA Technical Reports Server (NTRS)

Brearley, Adrian J.; Prinz, Martin

1992-01-01

Petrographic studies of Nilpena polymict ureilite have revealed the presence of small quantities of carbonaceous chondrite matrix clasts. Detailed electron microprobe and TEM studies show that the chemistry and fine-scale mineralogy of one of these clasts is consistent with CI carbonaceous chondrite matrix. Compared to Orgeuil, the phyllosilicate, sulfide, and oxide mineralogy suggests that the Nilpena clasts may represent a less altered type of CI matrix. It is suggested that increased oxidation and aqueous alteration of Nilpena-type materials could result in the formation of the type of mineral assemblage observed in Orgueil. Increased alteration produces progressive more Mg-rich phyllosilicates and more Fe(3+)-rich iron oxides, such as ferrihydrite. As a function of increased alteration, Ca is also progressively leached from the matrix material to form carbonate veins. The depletion of Ca in CI chondrite matrices suggests the Ivuna and Alais may be intermediate in their degree of alteration to Nilpena and Orgueil.

Taxonomic Composition and Trophic Structure of the Continental Bony Fish Assemblage from the Early Late Cretaceous of Southeastern Morocco

PubMed Central

Cavin, Lionel; Boudad, Larbi; Tong, Haiyan; Läng, Emilie; Tabouelle, Jérôme; Vullo, Romain

2015-01-01

The mid-Cretaceous vertebrate assemblage from south-eastern Morocco is one of the most diversified continental vertebrate assemblages of this time worldwide. The bony fish component (coelacanths, lungfishes and ray-finned fishes) is represented by relatively complete specimens and, mostly, by fragmentary elements scattered along 250 kilometres of outcrops. Here we revisit the bony fish assemblage by studying both isolated remains collected during several fieldtrips and more complete material kept in public collections. The assemblage comprises several lungfish taxa, with the first mention of the occurrence of Arganodus tiguidiensis, and possibly two mawsoniid coelacanths. A large bichir cf. Bawitius, is recorded and corresponds to cranial elements initially referred to ‘Stromerichthys’ from coeval deposits in Egypt. The ginglymodians were diversified with a large ‘Lepidotes’ plus two obaichthyids and a gar. We confirm here that this gar belongs to a genus distinctive from Recent gars, contrary to what was suggested recently. Teleosteans comprise a poorly known ichthyodectiform, a notopterid, a probable osteoglossomorph and a large tselfatiiform, whose cranial anatomy is detailed. The body size and trophic level for each taxon are estimated on the basis of comparison with extant closely related taxa. We plotted the average body size versus average trophic level for the Kem Kem assemblage, together with extant marine and freshwater assemblages. The Kem Kem assemblage is characterized by taxa of proportionally large body size, and by a higher average trophic level than the trophic level of the extant compared freshwater ecosystems, but lower than for the extant marine ecosystems. These results should be regarded with caution because they rest on a reconstructed assemblage known mostly by fragmentary remains. They reinforce, however, the ecological oddities already noticed for this mid-Cretaceous vertebrate ecosystem in North Africa. PMID:26018561

The endemic Patagonian vespertilionid assemblage is a depauperate ecomorphological vicariant of species-rich neotropical assemblages

PubMed Central

Giannini, Norberto P.

2017-01-01

Abstract Vespertilionidae is the most diverse chiropteran family, and its diversity is concentrated in warm regions of the World; however, due to physiological and behavioral adaptations, these bats also dominate bat faunas in temperate regions. Here we performed a comparative study of vespertilionid assemblages from two broad regions of the New World, the cold and harsh Patagonia, versus the remaining temperate-to-subtropical, extra-Patagonian eco-regions of the South American Southern Cone. We took an ecomorphological approach and analyzed the craniodental morphological structure of these assemblages within a phylogenetic framework. We measured 17 craniodental linear variables from 447 specimens of 22 currently recognized vespertilionid species of the study regions. We performed a multivariate analysis to define the morphofunctional space, and calculated the pattern and degree of species packing for each assemblage. We assessed the importance of phylogeny and biogeography, and their impact on depauperate (Patagonian) versus rich (extra-Patagonian) vespertilionid assemblages as determinants of morphospace structuring. We implemented a sensitivity analysis associated to small samples of rare species. The morphological patterns were determined chiefly by the evolutionary history of the family. The Patagonian assemblage can be described as a structurally similar but comparatively depauperate ecomorphological version of those assemblages from neighboring extra-Patagonian eco-regions. The Patagonian assemblage seems to have formed by successively adding populations from Northern regions that eventually speciated in the region, leaving corresponding sisters (vicariants) in extra-Patagonian eco-regions that continued to be characteristically richer. Despite being structurally akin, degree of species packing in Patagonia was comparatively very low, which may reflect the effect of limited dispersal success into a harsh region for bat survival. PMID:29492009

Aquatic assemblages of the highly urbanized Santa Ana River Basin, California

USGS Publications Warehouse

Brown, Larry R.; Burton, Carmen; Belitz, Kenneth

2005-01-01

We assessed the structure of periphyton, benthic macroinvertebrate, and fish assemblages and their associations with environmental variables at 17 sites on streams of the highly urbanized Santa Ana River basin in Southern California. All assemblages exhibited strong differences between highly urbanized sites in the valley and the least-impacted sites at the transition between the valley and undeveloped mountains. Results within the urbanized area differed among taxa. Periphyton assemblages were dominated by diatoms (>75% of total taxa). Periphyton assemblages within the urbanized area were not associated with any of the measured environmental variables, suggesting that structure of urban periphyton assemblages might be highly dependent on colonization dynamics. The number of Ephemeroptera, Trichoptera, and Plecoptera (EPT) taxa included in macroinvertebrate assemblages ranged from 0 to 6 at urbanized sites. Benthic macroinvertebrate assemblages had significant correlations with several environmental variables within the urban area, suggesting that stream size and permanence were important determinants of distribution among the species able to survive conditions in urban streams. Only 4 of 16 fish species collected were native to the drainage. Fish assemblages of urbanized sites included two native species, arroyo chub Gila orcuttii and Santa Ana sucker Catostomus santaanae, at sites that were intermediate in coefficient of variation of bank-full width, depth, bed substrate, and water temperature. Alien species dominated urbanized sites with lesser or greater values for these variables. These results suggest that urban streams can be structured to enhance populations of native fishes. Continued study of urban streams in the Santa Ana River basin and elsewhere will contribute to the basic understanding of ecological principles and help preserve the maximum ecological value of streams in highly urbanized areas.

Molluscan assemblages on coral reefs and associated hard substrata in the northern Red Sea

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

Paleobiology of the Mesoproterozoic Billyakh Group, Anabar Uplift, northern Siberia.

PubMed

Sergeev, V N; Knoll, A H; Grotzinger, J P

1995-01-01

Silicified peritidal carbonates of the Mesoproterozoic Kotuikan and Yusmastakh Formations, Anabar Uplift, northeastern Siberia, contain exceptionally well-preserved microfossils. The assemblage is dominated by ellipsoidal akinetes of nostocalean cyanobacteria (Archaeoellipsoides) and problematic spheroidal unicells (Myxococcoides); both are allochthonous and presumably planktonic. The assemblage also includes distinctive mat-forming scytonematacean and entophysalidacean cyanobacteria, diverse short trichomes interpreted as cyanobacterial hormogonia or germinated akinetes, rare longer trichomes, and several types of colonial unicells. Although many taxa in the Kotuikan-Yusmastakh assemblage are long-ranging prokaryotes, the overall character of the assemblage is distinctly Mesoproterozoic, with its major features shared by broadly coeval floras from Canada, China, India, and elsewhere in Siberia. Microfossils also occur in middle to inner shelf shales of the Ust'-Il'ya and lower Kotuikan Formations. Leiosphaerid acritarchs (up to several hundred microns in diameter) characterize this facies. As in other Mesoproterozoic acritarch assemblages, acanthomorphic and other complex forms that typify Neoproterozoic assemblages are absent. The combination in Billyakh assemblages of exceptional preservation and low eukaryotic diversity supports the hypothesis that nucleated organisms diversified markedly near the Mesoproterozoic-Neoproterozoic boundary. The assemblages also demonstrate the antiquity of cyanobacteria capable of cell differentiation and suggest the importance of both changing peritidal substrates and evolving eukaryotes in determining stratigraphic patterns of Proterozoic prokaryotes. The permineralized assemblage contains 33 species belonging to 17 genera. Ten new species or new combinations are proposed: Archaeoellipsoides costatus n. sp., A. elongatus n. comb., A. dolichos n. comb., A. minor n. nom., A. crassus n. comb., A. major n. comb., A. bactroformis n. sp., Veteronostocale medium n. sp., Filiconstrictosus cephalon n. sp., and Partitiofilum yakschinii n. sp.

Paleobiology of the Mesoproterozoic Billyakh Group, Anabar Uplift, northern Siberia

NASA Technical Reports Server (NTRS)

Sergeev, V. N.; Knoll, A. H.; Grotzinger, J. P.

1995-01-01

Silicified peritidal carbonates of the Mesoproterozoic Kotuikan and Yusmastakh Formations, Anabar Uplift, northeastern Siberia, contain exceptionally well-preserved microfossils. The assemblage is dominated by ellipsoidal akinetes of nostocalean cyanobacteria (Archaeoellipsoides) and problematic spheroidal unicells (Myxococcoides); both are allochthonous and presumably planktonic. The assemblage also includes distinctive mat-forming scytonematacean and entophysalidacean cyanobacteria, diverse short trichomes interpreted as cyanobacterial hormogonia or germinated akinetes, rare longer trichomes, and several types of colonial unicells. Although many taxa in the Kotuikan-Yusmastakh assemblage are long-ranging prokaryotes, the overall character of the assemblage is distinctly Mesoproterozoic, with its major features shared by broadly coeval floras from Canada, China, India, and elsewhere in Siberia. Microfossils also occur in middle to inner shelf shales of the Ust'-Il'ya and lower Kotuikan Formations. Leiosphaerid acritarchs (up to several hundred microns in diameter) characterize this facies. As in other Mesoproterozoic acritarch assemblages, acanthomorphic and other complex forms that typify Neoproterozoic assemblages are absent. The combination in Billyakh assemblages of exceptional preservation and low eukaryotic diversity supports the hypothesis that nucleated organisms diversified markedly near the Mesoproterozoic-Neoproterozoic boundary. The assemblages also demonstrate the antiquity of cyanobacteria capable of cell differentiation and suggest the importance of both changing peritidal substrates and evolving eukaryotes in determining stratigraphic patterns of Proterozoic prokaryotes. The permineralized assemblage contains 33 species belonging to 17 genera. Ten new species or new combinations are proposed: Archaeoellipsoides costatus n. sp., A. elongatus n. comb., A. dolichos n. comb., A. minor n. nom., A. crassus n. comb., A. major n. comb., A. bactroformis n. sp., Veteronostocale medium n. sp., Filiconstrictosus cephalon n. sp., and Partitiofilum yakschinii n. sp.

Determinants of fish assemblage structure in Northwestern Great Plains streams

USGS Publications Warehouse

Mullen, J.A.; Bramblett, R.G.; Guy, C.S.; Zale, A.V.; Roberts, D.W.

2011-01-01

Prairie streams are known for their harsh and stochastic physical conditions, and the fish assemblages therein have been shown to be temporally variable. We assessed the spatial and temporal variation in fish assemblage structure in five intermittent, adventitious northwestern Great Plains streams representing a gradient of watershed areas. Fish assemblages and abiotic conditions varied more spatially than temporally. The most important variables explaining fish assemblage structure were longitudinal position and the proportion of fine substrates. The proportion of fine substrates increased proceeding upstream, approaching 100% in all five streams, and species richness declined upstream with increasing fine substrates. High levels of fine substrate in the upper reaches appeared to limit the distribution of obligate lithophilic fish species to reaches further downstream. Species richness and substrates were similar among all five streams at the lowermost and uppermost sites. However, in the middle reaches, species richness increased, the amount of fine substrate decreased, and connectivity increased as watershed area increased. Season and some dimensions of habitat (including thalweg depth, absolute distance to the main-stem river, and watershed size) were not essential in explaining the variation in fish assemblages. Fish species richness varied more temporally than overall fish assemblage structure did because common species were consistently abundant across seasons, whereas rare species were sometimes absent or perhaps not detected by sampling. The similarity in our results among five streams varying in watershed size and those from other studies supports the generalization that spatial variation exceeds temporal variation in the fish assemblages of prairie and warmwater streams. Furthermore, given longitudinal position, substrate, and stream size, general predictions regarding fish assemblage structure and function in prairie streams are possible. ?? American Fisheries Society 2011.

Taxonomic composition and trophic structure of the continental bony fish assemblage from the early late cretaceous of Southeastern Morocco.

PubMed

Cavin, Lionel; Boudad, Larbi; Tong, Haiyan; Läng, Emilie; Tabouelle, Jérôme; Vullo, Romain

2015-01-01

The mid-Cretaceous vertebrate assemblage from south-eastern Morocco is one of the most diversified continental vertebrate assemblages of this time worldwide. The bony fish component (coelacanths, lungfishes and ray-finned fishes) is represented by relatively complete specimens and, mostly, by fragmentary elements scattered along 250 kilometres of outcrops. Here we revisit the bony fish assemblage by studying both isolated remains collected during several fieldtrips and more complete material kept in public collections. The assemblage comprises several lungfish taxa, with the first mention of the occurrence of Arganodus tiguidiensis, and possibly two mawsoniid coelacanths. A large bichir cf. Bawitius, is recorded and corresponds to cranial elements initially referred to 'Stromerichthys' from coeval deposits in Egypt. The ginglymodians were diversified with a large 'Lepidotes' plus two obaichthyids and a gar. We confirm here that this gar belongs to a genus distinctive from Recent gars, contrary to what was suggested recently. Teleosteans comprise a poorly known ichthyodectiform, a notopterid, a probable osteoglossomorph and a large tselfatiiform, whose cranial anatomy is detailed. The body size and trophic level for each taxon are estimated on the basis of comparison with extant closely related taxa. We plotted the average body size versus average trophic level for the Kem Kem assemblage, together with extant marine and freshwater assemblages. The Kem Kem assemblage is characterized by taxa of proportionally large body size, and by a higher average trophic level than the trophic level of the extant compared freshwater ecosystems, but lower than for the extant marine ecosystems. These results should be regarded with caution because they rest on a reconstructed assemblage known mostly by fragmentary remains. They reinforce, however, the ecological oddities already noticed for this mid-Cretaceous vertebrate ecosystem in North Africa.

High-temperature carbonates in the Stillwater Complex, Montana, USA

NASA Astrophysics Data System (ADS)

Aird, H. M.; Boudreau, A. E.

2012-12-01

The processes involved in the petrogenesis of the sulphide-hosted platinum-group-element (PGE) deposits of the Stillwater Complex are controversial, with theories ranging from the purely magmatic to those involving an aqueous fluid. To further constrain these models, we have been examining the trace phase assemblages in rocks away from the ore zones. High-temperature carbonates have been observed in association with sulphide minerals below the platiniferous J-M Reef of the Stillwater Complex. The carbonate assemblage consists of dolomite with exsolved calcite and is found in contact with sulphide minerals: chalcopyrite and pyrrhotite in the Peridotite Zone; and pyrrhotite with pentlandite, pyrite and chalcopyrite in Gabbronorite I of the Lower Banded Series. The minimal silicate alteration and the lack of greenschist minerals in association with the mineral assemblage are consistent with a high-temperature origin for the carbonates. The calcite-dolomite geothermometer [1] yields a minimum formation temperature of ~900°C for the unmixed assemblages. A reaction rim surrounds the carbonate-sulphide assemblages, showing an alteration of the host orthopyroxene to a more Ca-enriched, Fe-depleted composition. This is consistent with diffusive exchange between carbonates and pyroxenes at high temperatures, mediated by an aqueous fluid. The highly variable molar MnO/FeO ratios in both the high-temperature carbonates and their associated altered pyroxene rims also imply their interaction with a fluid. The carbonate assemblages are consistent with Stillwater fluid inclusion studies [2], showing that fluids comprising coexisting Cl-rich brine and carbonic fluid were trapped in pegmatitic quartz at 700-715°C, some of which also contained "accidental" calcite inclusions. The high Cl-content of apatite [3] found below the platiniferous J-M Reef is further evidence that a Cl-rich fluid was migrating through the rocks beneath the Reef. Carbonates have been shown to be stabilized by Cl-rich fluids [4]. The association of high-temperature carbonates with sulphides beneath the J-M reef supports the hydromagmatic theory which involves a late-stage chloride-carbonate fluid percolating upwards, dissolving PGE and sulphides and redepositing them at a higher stratigraphic level. [1] Anovitz, L.M., and Essene, E.J., 1987, Phase Equilibria in the System CaCO3-MgCO3-FeCO3: Journal of Petrology, v. 28, p. 389-414. [2] Hanley, J.J., Mungall, J.E., Pettke, T., Spooner, E.T.C., and Bray, C.J., 2008, Fluid and Halide Melt Inclusions of Magmatic Origin in the Ultramafic and Lower Banded Series, Stillwater Complex, Montana, USA: Journal of Petrology, v. 49, p. 1133-1160. [3] Boudreau, A.E., and McCallum, I.S., 1989, Investigations of the Stillwater Complex: Part V. Apatites as indicators of evolving fluid composition: Contributions to Mineralogy and Petrology, v. 102, p. 138-153. [4] Newton, R.C., and Manning, C.E., 2002, Experimental determination of calcite solubility in H2O-NaCl solutions at deep crust/upper mantle pressures and temperature: implications for metasomatic processes in shear zones: American Mineralogist, v. 87, p. 1401-1409.

Sulfide mineralization: Its role in chemical weathering of Mars

NASA Technical Reports Server (NTRS)

Burns, Roger G.

1988-01-01

Pyrrhotite-pentlandite assemblages in mafic and ultramafic igneous rocks may have contributed significantly to the chemical weathering reactions that produced degradation products in the Martian regolith. By analogy with terrestrial processes, a model is proposed whereby supergene alteration of these primary Fe-Ni sulfides on Mars has generated secondary sulfides (e.g., pyrite) below the water table and produced acidic groundwater containing high concentrations of dissolved Fe, Ni and sulfate ions. The low pH solutions also initiated weathering reactions of igneous feldspars and ferromagnesian silicates to form clay silicate and ferric oxyhydroxide phases. Near-surface oxidation and hydrolysis of ferric sulfato- and hydroxo-complex ions and sols formed gossans above the water table consisting of poorly crystalline hydrated ferric sulfates (e.g., jarosite), oxides (ferrihydrite, goethite) and silica (opal). Underlying groundwater, now permafrost, contains hydroxo sulfato complexes of Fe, Al, Mg, Ni, etc., which may be stabilized in frozen acidic solutions beneath the surface of Mars. Sublimation of permafrost may replenish colloidal ferric oxides, sulfates and phyllosilicates during dust storms on Mars.

Weathering of sulfides on Mars

NASA Technical Reports Server (NTRS)

Burns, Roger G.; Fisher, Duncan S.

1987-01-01

Pyrrhotite-pentlandite assemblages in mafic and ultramafic igneous rocks may have contributed significantly to the chemical weathering reactions that produce degradation products in the Martian regolith. By analogy and terrestrial processes, a model is proposed whereby supergene alteration of these primary Fe-Ni sulfides on Mars has generated secondary sulfides (e.g., pyrite) below the water table and produced acidic groundwater containing high concentrations of dissolved Fe, Ni, and sulfate ions. The low pH solutions also initiated weathering reactions of igneous feldspars and ferromagnesian silicates to form clay silicate and ferric oxyhydroxide phases. Near-surface oxidation and hydrolysis of ferric sulfato-and hydroxo-complex ions and sols formed gossan above the water table consisting of poorly crystalline hydrated ferric sulfates (e.g., jarosite), oxides (ferrihydrite, goethite), and silica (opal). Underlying groundwater, now permafrost contains hydroxo sulfato complexes of Fe, Al, Mg, Ni, which may be stabilized in frozen acidic solutions beneath the surface of Mars. Sublimation of permafrost may replenish colloidal ferric oxides, sulfates, and phyllosilicates during dust storms on Mars.

Primary amines protect against retinal degeneration in mouse models of retinopathies

PubMed Central

Maeda, Akiko; Golczak, Marcin; Chen, Yu; Okano, Kiichiro; Kohno, Hideo; Shiose, Satomi; Ishikawa, Kaede; Harte, William; Palczewska, Grazyna; Maeda, Tadao; Palczewski, Krzysztof

2011-01-01

Vertebrate vision is initiated by photoisomerization of the visual pigment chromophore, 11-cis-retinal, and is maintained by continuous regeneration of this retinoid through a series of reactions termed the retinoid cycle. However, toxic side reaction products, especially those involving reactive aldehyde groups of the photoisomered product, all-trans-retinal, can cause severe retinal pathology. Here we lowered peak concentrations of free all-trans-retinal with primary amine-containing FDA-approved drugs that did not inhibit chromophore regeneration in mouse models of retinal degeneration. Schiff base adducts between all-trans-retinal and these amines were identified by mass spectrometry. Adducts were observed in mouse eyes only when an experimental drug protected the retina from degeneration in both short-term and long-term treatment experiments. This study demonstrates a molecular basis of all-trans-retinal-induced retinal pathology and identifies an assemblage of FDA-approved compounds with protective effects against this pathology in a mouse model that displays features of Stargardt’s and age-related retinal degeneration. PMID:22198730

A MULTI-ASSEMBLAGE INDEX OF STREAM INTEGRITY: WHAT ARE THE FISH, BUGS, AND ALGAE TELLING US?

EPA Science Inventory

Three different taxonomic assemblages have been proposed for use in the biological monitoring and assessment of water quality and stream biological integrity: fishm macroinvertebrates, and periphyton. All three assemblages can be eficiently collected with established methods, ar...

Surface water connectivity drives richness and composition of Arctic lake fish assemblages

USGS Publications Warehouse

Laske, Sarah M.; Haynes, Trevor B.; Rosenberger, Amanda E.; Koch, Joshua C.; Wipfli, Mark S.; Whitman, Matthew; Zimmerman, Christian E.

2016-01-01

This work provides useful baseline information on the processes that drive the relations between patch connectivity and fish species richness and assemblage composition. The environmental processes that organise fish assemblages in Arctic lakes are likely to change in a warming climate.

Seafloor massive sulfide deposits support unique megafaunal assemblages: Implications for seabed mining and conservation.

PubMed

Boschen, Rachel E; Rowden, Ashley A; Clark, Malcolm R; Pallentin, Arne; Gardner, Jonathan P A

2016-04-01

Mining of seafloor massive sulfides (SMS) is imminent, but the ecology of assemblages at SMS deposits is poorly known. Proposed conservation strategies include protected areas to preserve biodiversity at risk from mining impacts. Determining site suitability requires biological characterisation of the mine site and protected area(s). Video survey of a proposed mine site and protected area off New Zealand revealed unique megafaunal assemblages at the mine site. Significant relationships were identified between assemblage structure and environmental conditions, including hydrothermal features. Unique assemblages occurred at both active and inactive chimneys and are particularly at risk from mining-related impacts. The occurrence of unique assemblages at the mine site suggests that the proposed protected area is insufficient alone and should instead form part of a network. These results provide support for including hydrothermally active and inactive features within networks of protected areas and emphasise the need for quantitative survey data of proposed sites. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Meiofaunal assemblages associated with native and non-indigenous macroalgae

NASA Astrophysics Data System (ADS)

Veiga, Puri; Sousa-Pinto, Isabel; Rubal, Marcos

2016-07-01

Meiofauna is a useful tool to detect effects of different disturbances; however, its relevance in the frame of biological invasions has been almost fully neglected. Meiofaunal assemblages associated with the invasive macroalga Sargassum muticum were studied and compared with those associated with two native macroalgae (Bifurcaria bifurcata and Chondrus crispus). We used a linear mixed model to determine the influence of habitat size (i.e. macroalgal biomass) in shaping meiofaunal assemblages. Results showed that habitat size (i.e. macroalgal biomass) shaped meiofaunal assemblages influencing its abundance, richness and structure. However, the identity of macroalga (i.e. species) appears also to play a significant role, particularly the differences of complexity among the studied species may shape their meiofaunal assemblages. Finally, the invasive macroalga appears to influence positively species richness. Our results highlight the need of including different faunal components to achieve a comprehensive knowledge on effects of invasive macroalgae and that meiofaunal assemblages may be a valuable tool to examine them.

Giardia duodenalis and Giardia enterica in children: first evidence of assemblages A and B in Eastern Slovakia.

PubMed

Štrkolcová, G; Goldová, M; Maďar, M; Čechová, L; Halánová, M; Mojžišová, J

2016-05-01

For an overview on the occurrence of Giardia assemblages in children in Eastern Slovakia, we examined 259 faecal samples of children from the segregated settlement in Medzev, 30 samples of children from the orphanage in Medzev and 40 samples of children with autism from the Special Elementary School in Košice. Thirty-eight samples (14.67 %) from the segregated settlement, 19 samples (63.33 %) from the orphanage and two samples (5.0 %) from the Special Elementary School were positive for Giardia by flotation. The initial microscopic diagnostics were completed by the genotyping of the triosephosphate isomerase-gene loci (tpi genes) which revealed the existence of two Giardia assemblages in Slovak population, namely Giardia duodenalis (assemblage A) and Giardia enterica (assemblage B). These results represent the first evidence of A and B assemblages in children in Slovakia. Epidemiological significance and the impact on the public health of Giardia infection are highlighted.

Genotyping of Giardia isolates in Scotland: a descriptive epidemiological study.

PubMed

Alexander, C; Jones, B; Inverarity, D; Pollock, K G J

2014-08-01

Giardiasis, caused by the intestinal protozoan parasite Giardia intestinalis (synonyms: G. lamblia, G. duodenalis), is one of the most frequent parasites to infect the Scottish population. Transmission of the infective cysts in faecal matter is commonly via food and/or water. Giardia is subdivided into assemblages, where clinical and epidemiological differences have been described between assemblages A and B. This snapshot descriptive epidemiological study examines 30 positive cases of Giardia of which 72% (n = 21) were shown to be assemblage A, 14% (n = 4) assemblage B and 10% (n = 3) mixed assemblages (A and B). There was a 2:3 female:male ratio of affected individuals with foreign travel recorded in 22 of these cases. The commonest symptom was diarrhoea which was reported in 80% of cases followed by tiredness. Five cases required hospitalization emphasizing the importance of gaining a greater understanding of how Giardia assemblages influence clinical outcomes to assist in formulating guidelines to manage potential Giardia outbreaks.

A comparison of spring larval fish assemblages in the Strait of Georgia (British Columbia, Canada) between the early 1980s and late 2000s

NASA Astrophysics Data System (ADS)

Guan, Lu; Dower, John F.; McKinnell, Skip M.; Pepin, Pierre; Pakhomov, Evgeny A.; Hunt, Brian P. V.

2015-11-01

The concentration and composition of the larval fish assemblage in the Strait of Georgia (British Columbia, Canada) has changed between the early 1980s (1980 and 1981) and the late 2000s (2007, 2009 and 2010). During both periods, the spring larval fish assemblages were dominated by pelagic species: Clupea pallasi (Pacific herring), Merluccius productus (Pacific hake), Leuroglossus schmidti (northern smoothtongue) and Theragra chalcogramma (walleye Pollock). The average concentration of Merluccius productus, Theragra chalcogramma, Leuroglossus schmidti, and Sebastes spp. declined between the early 1980s and the late 2000s; in contrast, the absolute concentration and proportion of Pleuronectidae and several demersal fish taxa increased in the spring larval assemblage. Examination of the associations between larval fish assemblages and environmental fluctuations suggests that large-scale climate processes are potential contributors to variations in overall larval concentrations of the dominant taxa and assemblage composition in the Strait of Georgia.

The role of depth in regulating water quality and fish assemblages in oxbow lakes

USGS Publications Warehouse

Goetz, Daniel B.; Miranda, Leandro E.; Kroger, Robert; Andrews, Caroline S.

2015-01-01

We evaluated water quality and fish assemblages in deep (> 3.0 m; N = 7) and shallow (< 1.5 m; N = 6) floodplain lakes in the intensively cultivated Yazoo River Basin (Mississippi, USA) using indirect gradient multivariate procedures. Shallow lakes displayed wide diel oxygen fluctuations, some reaching hypoxic/anoxic conditions for extended periods of time, high suspended solids, and extreme water temperatures. Conversely, deeper lakes were represented by higher visibility, stable oxygen levels, and cooler water temperatures. Fish assemblages in shallow lakes were dominated by tolerant, small-bodied fishes and those able to breathe atmospheric oxygen. Deeper lakes had a greater representation of predators and other large-bodied fishes. Our evaluation suggests fish assemblages are reflective of oxbow lakes water quality, which is shaped by depth. Understanding the interactions between depth, water quality, and fish assemblages may facilitate development of effective management plans for improving conditions necessary to sustain diverse fish assemblages in agriculturally dominated basins.

Astroglia-Microglia Cross Talk during Neurodegeneration in the Rat Hippocampus

PubMed Central

Batlle, Montserrat; Ferri, Lorenzo; Andrade, Carmen; Ortega, Francisco-Javier; Vidal-Taboada, Jose M.; Pugliese, Marco; Mahy, Nicole; Rodríguez, Manuel J.

2015-01-01

Brain injury triggers a progressive inflammatory response supported by a dynamic astroglia-microglia interplay. We investigated the progressive chronic features of the astroglia-microglia cross talk in the perspective of neuronal effects in a rat model of hippocampal excitotoxic injury. N-Methyl-D-aspartate (NMDA) injection triggered a process characterized within 38 days by atrophy, neuronal loss, and fast astroglia-mediated S100B increase. Microglia reaction varied with the lesion progression. It presented a peak of tumor necrosis factor-α (TNF-α) secretion at one day after the lesion, and a transient YM1 secretion within the first three days. Microglial glucocorticoid receptor expression increased up to day 5, before returning progressively to sham values. To further investigate the astroglia role in the microglia reaction, we performed concomitant transient astroglia ablation with L-α-aminoadipate and NMDA-induced lesion. We observed a striking maintenance of neuronal death associated with enhanced microglial reaction and proliferation, increased YM1 concentration, and decreased TNF-α secretion and glucocorticoid receptor expression. S100B reactivity only increased after astroglia recovery. Our results argue for an initial neuroprotective microglial reaction, with a direct astroglial control of the microglial cytotoxic response. We propose the recovery of the astroglia-microglia cross talk as a tissue priority conducted to ensure a proper cellular coordination that retails brain damage. PMID:25977914

Geologic setting of the Fortymile River area - Polyphase deformational history within part of the eastern Yukon-Tanana uplands of Alaska: A section in Geologic studies in Alaska by the U.S. Geological Survey, 1998

USGS Publications Warehouse

Day, Warren C.; Gamble, Bruce M.; Henning, Mitchell W.; Smith, Bruce D.

2000-01-01

The Fortymile River area lies within the Yukon-Tanana lithotectonic terrane of east-central Alaska. This terrane is a mosaic of several lithotectonic assemblages, each with a coherent lithologic, metamorphic, and deformational history. Previous workers have shown that the Fortymile River area is underlain by rocks of the Seventymile, Taylor Mountain, and Nisutlin assemblages. The Taylor Mountain tectonostratigraphic assemblage is the most widespread within study area and is made up of amphibolite-grade Paleozoic(?) metamorphosed supracrustal rocks that have been intruded by plutonic rocks. The protoliths for the supracrustal rocks include mafic volcanic(?) rocks, graywacke, sulfide-rich siliciclastic sediments, quartz-rich sandstone, pelite, and marble, all of which are cut by late sulfide-bearing quartz veins. The mafic metavolcanic(?) rocks are of both tholeiitic and calc-alkalic affinity and have distinctly different rare-earth-element abundances. The supracrustal rocks are interpreted to have been deposited on a continental margin and (or) distal to an island-arc complex in a back-arc basin.The Steele Creek Dome Tonalite is defined herein as a composite body of foliated biotite-hornblende tonalitic orthogneiss containing country-rock rafts of paragneiss. The complex lies within the Taylor Mountain assemblage and has been tectonized and presumably recrystallized during regional Early Jurassic ductile deformation. The tonalite is compositionally similar to other volcanic-arc granites. The entire sequence was intruded by a Early Jurassic(?) hornblende monzodioritediorite-quartz diorite suite.The area has been subjected to at least three phases of deformation. The first (D1) produced a strong regional S1 schistosity and local mineral lineations. The second (D2) deformation generated tight to isoclinal F2 folds, folding the S1 schistosity and L1 mineral lineations, and was accompanied by a weak axial-planar S2 cleavage and both L2 mineral and stretching lineations. The question remains if the D1 and D2 tectonic fabrics either (1) record end members of a continuous, relatively long lived, progressive ductile deformation associated with the peak regional metamorphism and northward-directed thrusting; or (2) were separate and distinct pulses of tectonism. The youngest deformation recognized (D3) folded the ductile fabric elements about south-plunging, east-vergent, open folds and records east-west-directed tectonic shortening.

Can rove beetles (Staphylinidae) be excluded in studies focusing on saproxylic beetles in central European beech forests?

PubMed

Parmain, G; Bouget, C; Müller, J; Horak, J; Gossner, M M; Lachat, T; Isacsson, G

2015-02-01

Monitoring saproxylic beetle diversity, though challenging, can help identifying relevant conservation sites or key drivers of forest biodiversity, and assessing the impact of forestry practices on biodiversity. Unfortunately, monitoring species assemblages is costly, mainly due to the time spent on identification. Excluding families which are rich in specimens and species but are difficult to identify is a frequent procedure used in ecological entomology to reduce the identification cost. The Staphylinidae (rove beetle) family is both one of the most frequently excluded and one of the most species-rich saproxylic beetle families. Using a large-scale beetle and environmental dataset from 238 beech stands across Europe, we evaluated the effects of staphylinid exclusion on results in ecological forest studies. Simplified staphylinid-excluded assemblages were found to be relevant surrogates for whole assemblages. The species richness and composition of saproxylic beetle assemblages both with and without staphylinids responded congruently to landscape, climatic and stand gradients, even when the assemblages included a high proportion of staphylinid species. At both local and regional scales, the species richness as well as the species composition of staphylinid-included and staphylinid-excluded assemblages were highly positively correlated. Ranking of sites according to their biodiversity level, which either included or excluded Staphylinidae in species richness, also gave congruent results. From our results, species assemblages omitting staphylinids can be taken as efficient surrogates for complete assemblages in large scale biodiversity monitoring studies.

Persistence of an unusual pelagic zooplankton assemblage in a clear, mountain lake

USGS Publications Warehouse

Larson, G.L.; Hoffman, R.L.; C. David, McIntire

2002-01-01

The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988-1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

Persistence of an unusual pelagic zooplankton assemblage in a clear mountain lake

USGS Publications Warehouse

Larson, Gary L.; Hoffman, Robert L.; McIntire, C.D.

2002-01-01

The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988a??1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

First genetic characterisation of Giardia in human isolates from Jordan.

PubMed

Hijjawi, Nawal; Yang, Rongchang; Mukbel, Rami; Yassin, Yasmeen; Mharib, Taghrid; Ryan, Una

2016-10-01

Little is known about the epidemiology of Giardia in Jordan and to date, no genotyping studies have been conducted on Giardia isolates from Jordanians. In the present study, a total of 49 microscopy-positive faecal samples from Jordanian patients suffering from giardiasis were analysed at two loci: the triose phosphate isomerase (tpi) gene and the glutamate dehydrogenase (gdh) gene. At the tpi locus, a total of 28 samples amplified and assemblage A was identified in 46.4 % (13/28) samples, while assemblage B was identified in 50 % (14/28) samples and a mixed assemblage A and B was identified in one sample (3.6 %) (Table 1). At the gdh locus 48 isolates amplified and of these assemblages A was identified in 43.7 % (21/48) of isolates and assemblage B in 56.3 % (27/48) of isolates. No mixed infections were detected at the gdh locus. Subtyping at the gdh locus identified sub-assemblage AII in 43.7 % (21/48) of isolates and sub-assemblages BIII and BIV in 25 % (12/48) and 31.2 % (15/48) of isolates, respectively, with more genetic diversity in AII isolates than BIII or BIV isolates. Novel sub-types within each sub-assemblage were identified suggesting unique endemicity and anthroponotic transmission of Giardia in Jordanian patients suffering from giardiasis. Further studies are required to better understand the epidemiology and transmission of Giardia in Jordan.

Mid- to late-Holocene environmental evolution of the Loire estuary as observed from sedimentary characteristics and benthic foraminiferal assemblages

NASA Astrophysics Data System (ADS)

Durand, M.; Mojtahid, M.; Maillet, G. M.; Proust, J.-N.; Lehay, D.; Ehrhold, A.; Barré, A.; Howa, H.

2016-12-01

We used sedimentological and foraminiferal characteristics of four sedimentary cores, supported by paleogeographical and historical data, to reconstruct the depositional history of the inner Loire estuary (Near Saint-Nazaire, France) and the response of benthic foraminifera to the mid- to late-Holocene marine flooding of the incised valley. These were further used to evaluate the consequent changes in estuarine morphological and hydro-sedimentary patterns during this time period. Our results described significant changes in hydro-sedimentary dynamics over the past 6 kyrs BP. At our location, these changes expressed the combined influence of marine (e.g., tide, storm waves) and fluvial dynamics (e.g., floods), which are linked, on a broader scale, to sea-level variations and the regional climate regime. Three main periods stand out: (1) from 6.0 to 2.5 kyrs BP, when the sea-level rise slowed down, a large brackish bay extended over and around the study area. The fine-grained tidal rythmites recorded north of the Bilho bank (the main tidal bar located in our study area) indicated a calm depositional environment, protected from the main riverine influence. The presence of thick flood deposits from 5.4 to 4.0 kyrs BP near the Bilho bank indicates further the dominance of humid conditions. (2) From 2.5 kyrs BP to 1850 CE (pre-industrial state), sea-level stabilized at its present value, and the pre-existing bay was progressively infilled. North of the Bilho bank, near a major mudflat (Méan), the generally homogenous sedimentation composed of silty muds rich in organic matter indicated a sheltered environment; the main water flow channel being located south of the Bilho bank. Within this overall homogenous sedimentation, foraminiferal assemblages described rather accurately the progressive infilling of the valley (indicated by a decrease in the proportions of outer estuarine species), accompanied with the channelization of the main entering marine currents (tide, storm waves) (indicated by an increase in the proportions of transported species from the adjacent upper continental shelf), and finally the buildup of the Méan mudflat and the stabilization of the environment to its present day configuration (indicated by the dominance of autochthonous inner estuarine species). (3) Since 1850 CE, the human impact progressively modified the general landscape of our study area with the construction of the Saint-Nazaire shipyard, the digging of the northern navigation channel and the polderization of the northern Bay. The southern channel was progressively abandoned by the main water flow in favor of the newly dug northern channel, causing the southern migration of the Bilho sandbank and the progressive filling of the southern channel.

Experimental investigation of As, Sb and Cs behavior during olivine serpentinization in hydrothermal alkaline systems

NASA Astrophysics Data System (ADS)

Lafay, Romain; Montes-Hernandez, German; Janots, Emilie; Munoz, Manuel; Auzende, Anne Line; Gehin, Antoine; Chiriac, Rodica; Proux, Olivier

2016-04-01

While Fluid-Mobile Elements (FMEs) such as B, Sb, Li, As or Cs are particularly concentrated in serpentinites, data on FME fluid-serpentine partitioning, distribution, and sequestration mechanisms are missing. In the present experimental study, the behavior of Sb, As and Cs during San Carlos olivine serpentinization was investigated using accurate mineralogical, geochemical, and spectroscopic characterization. Static-batch experiments were conducted at 200 °C, under saturated vapor pressure (≈1.6 MPa), for initial olivine grain sizes of <30 μm (As), 30-56 μm (As, Cs, Sb) and 56-150 μm (Cs) and for periods comprised between 3 and 90 days. High-hydroxyl-alkaline fluid enriched with 200 mg L-1 of a single FME was used and a fluid/solid weight ratio of 15. For these particular conditions, olivine is favorably replaced by a mixture of chrysotile, polygonal serpentine and brucite. Arsenic, Cs or Sb reaction product content was determined as a function of reaction advancement for the different initial olivine grain sizes investigated. The results confirm that serpentinization products have a high FME uptake capacity with the partitioning coefficient increasing such as CsDp/fl = 1.5-1.6 < AsDp/fl = 3.5-4.5 < SbDp/fl = 28 after complete reaction of the 30-56 μm grain-sized olivine. The sequestration pathways of the three elements are however substantially different. While the As partition coefficient remains constant throughout the serpentinization reaction, the Cs partition coefficient decreases abruptly in the first stages of the reaction to reach a constant value after the reaction is 40-60% complete. Both As and Cs partitioning appear to decrease with increasing initial olivine grain size, but there is no significant difference in the partitioning coefficient between the 30-56 and 56-150 μm grain size after complete serpentinization. X-ray absorption spectroscopy (XAS) measurements combined with X-ray chemical measurements reveal that the As(V) is mainly adsorbed onto the serpentinization products, especially brucite. In contrast, mineralogical characterization combined with XAS spectroscopy reveal redox sensitivity for Sb sequestration within serpentine products, depending on the progress of the reaction. When serpentinization is <50%, initial Sb(III) is oxidized into Sb(V) and substantially adsorbed onto serpentine. For higher degrees of reaction, a decrease in Sb sequestration by serpentine products is observed and is attributed to a reduction of Sb(V) into Sb(III). This stage is characterized by the precipitation of Sb-Ni-rich phases and a lower bulk partitioning coefficient compared to that of the serpentine and brucite assemblage. Antimony reduction appears linked to water reduction accompanying the bulk iron oxidation, as half the initial Fe(II) is oxidized into Fe(III) and incorporated into the serpentine products once the reaction is over. The reduction of Sb implies a decrease of its solubility, but the type of secondary Sb-rich phases identified here might not be representative of natural systems where Sb concentrations are lower. These results bring new insights into the uptake of FME by sorption on serpentine products that may form in hydrothermal environments at low temperatures. FME sequestration here appears to be sensitive to various physicochemical parameters and more particularly to redox conditions that appear to play a preponderant role in the concentrations and mechanism of sequestration of redox-sensitive elements.

Benthic macroinvertebrate assemblages in the US nearshore zone of Lake Erie, 2009: Status and linkages to landscape-derived stressors

EPA Science Inventory

Benthic macroinvertebrate assemblages have been used as indicators of ecological condition because their responses integrate localized environmental conditions of the sediments and overlying water. Assemblages of benthic invertebrates in the near coastal region are of particular...

Local stress distribution around garnet inclusions during hydration of granulite in the Bergen Arcs, Norway

NASA Astrophysics Data System (ADS)

Centrella, Stephen; Vrijmoed, Johannes C.; Putnis, Andrew; Austrheim, Håkon

2017-04-01

The importance of heterogeneous stress and pressure distribution within a rock has been established over the last decades (see review in Tajčmanová et al., 2015). During a hydration reaction, depending on whether the system is open to mass transfer, the volume changes of the reaction may be accommodated by removing material into the fluid phase that leaves the system (Centrella et al., 2015; Centrella et al., 2016). The magnitudes and the spatial distribution of stress and pressure that evolve during such processes is largely unknown. We present here a natural example where a granulite is hydrated at amphibolite facies conditions from the Bergen Arcs in Norway. Granulitic garnet is associated with kyanite and quartz on one side, and amphibole-biotite on the other side. The first couple replaces the plagioclase of the granulite matrix whereas the second replaces the garnet. We use electron probe microanalysis (EPMA) and X-ray mapping to investigate the spatial and possible temporal relationships between these two parageneses. Gresens' analysis has been used to determine the mass balance and the local volume changes associated with the two reactions. The reaction to kyanite+quartz induces a loss in volume compared to the original plagioclase whereas the second reaction amphibole+biotite gains volume compared to the original garnet. The specific mass evolution associated with both reactions suggests a local mass balance probably associated with a single hydration event. Using the methodology of Vrijmoed & Podladchikov (2015) we test whether the microstructure may be partly related to the local stress heterogeneity around the garnet inclusion. We evaluate the phase assemblage and distribution at chemical equilibrium under a given input pressure field that can be computed with the Thermolab software. By varying the input pressure field using the Finite Element Method and comparing the resulting equilibrium assemblage to the real data an estimate of the local stress and pressure distribution around the garnet inclusion is obtained. The differences of the equilibrium model with the observations are discussed. References: Centrella, S., Austrheim, H., and Putnis, A., 2015, Coupled mass transfer through a fluid phase and volume preservation during the hydration of granulite: An example from the Bergen Arcs, Norway: Lithos, 236-237, p. 245-255, doi: 10.1016/j.lithos.2015.09.010. Centrella, S., Austrheim, H., and Putnis, A., 2016, Mass transfer and trace element redistribution during hydration of granulites in the Bergen Arcs, Norway: Lithos, v. 262, p. 1-10, doi: 10.1016/j.lithos.2016.06.019. Tajčmanová, L., Vrijmoed, J., and Moulas, E., 2015, Grain-scale pressure variations in metamorphic rocks: implications for the interpretation of petrographic observations: Lithos, 216-217, p. 338-351, doi: 10.1016/j.lithos.2015.01.006. Vrijmoed, J.C., and Podladchikov, Y.Y., 2015, Thermodynamic equilibrium at heterogeneous pressure: Contributions to Mineralogy and Petrology, v. 170, no. 1, doi: 10.1007/s00410-015-1156-1.

Assessing tree species assemblages in highly disturbed Puerto Rican karst landscapes using forest inventory data

Treesearch

Thomas James Brandeis

2006-01-01

Tree species assemblages described by landscape-scale forest inventory data both agreed and differed from those described by intensive, site specific studies in Puerto Rico's highly disturbed northern karst belt. Species assemblages found on hill tops (typified by Tabebuia heterophylla or Bursera simaruba with ...

BIRD SPECIES ASSEMBLAGES AS INDICATORS OF BIOLOGICAL INTEGRITY IN GREAT BASIN RANGELAND

EPA Science Inventory

The study evaluates the potential for bird species assemblages to serve as indicators of biological integrity of rangelands in the Great Basin in much the same way that fish and invertebrate assemblages have been used as indicators in aquatic environments. Our approach was to ide...

Comparing metagenomic and morphological periphyton assemblage data to major environmental gradients: A pilot study from the National Rivers and Stream Assessment

EPA Science Inventory

Biomonitoring has historically utilized morphological identifications to assess biological assemblages, but in recent years, new methods have been developed that allow for faster and more complete identification of biological assemblages by DNA metabarcoding. Unlike morphologica...

Introduction to historical changes in large river fish assemblages of the Americas

EPA Science Inventory

This book’s objective is to document historical changes in the fish assemblages of large American rivers, and to determine patterns in and rationale for those changes. In this chapter, we review pertinent literature on large rivers and fish assemblages worldwide and briefly intr...

Places for Pedagogies, Pedagogies for Places

ERIC Educational Resources Information Center

Duhn, Iris

2012-01-01

Working with an understanding of assemblage as the ad hoc groupings of vibrant materials and elements, this article argues that conceptualizing place as an assemblage opens possibilities for bridging the gap between subjects and objects that continue to structure pedagogy. Considering "place" as an assemblage of humans and their multiple…

Temporal patterns of diversity: Assessing the biotic and abiotic controls on ant assemblages

USGS Publications Warehouse

Dunn, R.R.; Parker, C.R.; Sanders, N.J.

2007-01-01

In this study, we use 12 months of data from 11 ant assemblages to test whether seasonal variation in ant diversity is governed by either the structuring influences of interspecific competition or environmental conditions. Because the importance of competition might vary along environmental gradients, we also test whether the signature of competition depends on elevation. We find little evidence that competition structures the seasonal patterns of activity in the ant assemblages considered, but find support for the effects of temperature on seasonal patterns of diversity, especially at low-elevation sites. Although, in general, both competition and the environment interact to structure ant assemblages, our results suggest that environmental conditions are the primary force structuring the seasonal activity of the ant assemblages studied here. ?? 2007 The Linnean Society of London.

Terroir is a key driver of seed-associated microbial assemblages.

PubMed

Klaedtke, Stephanie; Jacques, Marie-Agnès; Raggi, Lorenzo; Préveaux, Anne; Bonneau, Sophie; Negri, Valeria; Chable, Véronique; Barret, Matthieu

2016-06-01

Seeds have evolved in association with diverse microbial assemblages that may influence plant growth and health. However, little is known about the composition of seed-associated microbial assemblages and the ecological processes shaping their structures. In this work, we monitored the relative influence of the host genotypes and terroir on the structure of the seed microbiota through metabarcoding analysis of different microbial assemblages associated to five different bean cultivars harvested in two distinct farms. Overall, few bacterial and fungal operational taxonomic units (OTUs) were conserved across all seed samples. The lack of shared OTUs between samples is explained by a significant effect of the farm site on the structure of microbial assemblage, which explained 12.2% and 39.7% of variance in bacterial and fungal diversity across samples. This site-specific effect is reflected by the significant enrichment of 70 OTUs in Brittany and 88 OTUs in Luxembourg that lead to differences in co-occurrence patterns. In contrast, variance in microbial assemblage structure was not explained by host genotype. Altogether, these results suggest that seed-associated microbial assemblage is determined by niche-based processes and that the terroir is a key driver of these selective forces. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Patterns in larval fish assemblages under the influence of the Brazil current

NASA Astrophysics Data System (ADS)

Katsuragawa, M.; Dias, J. F.; Harari, J.; Namiki, C.; Zani-Teixeira, M. L.

2014-10-01

The present work investigates the composition of larval fish assemblages in the area under the influence of the Brazil Current (BC) off the Southeastern Brazilian Bight. Ichthyoplankton was sampled during two oceanographic cruises (November-December/1997 - spring; May/2001 - autumn) with bongo nets oblique tows. Seasonal variation and a coastal-ocean pattern in the distribution of larval fish was observed and was influenced by the dynamics of the water masses, Coastal Water (CW), Tropical Water (TW) and South Atlantic Central Water (SACW), the last two of which were transported by the BC. During spring, the shelf assemblage was dominated by larvae of small pelagic fishes, such as Sardinella brasiliensis, Engraulis anchoita and Trachurus lathami, and was associated with the enrichment of shallow water by the SACW upwelling. In autumn, the abundance of coastal species larvae was reduced, and the shelf assemblage was dominated by Bregmaceros cantori. A transitional assemblage occurred during the spring, and comprised mesopelagic and coastal species. In both seasons, the oceanic assemblage was dominated by the mesopelagic families, Myctophidae, Sternopthychidae and Phosichthyidae. The oceanographic conditions also demonstrated clear differences between the northern and southern subareas, particularly in the shelf zone. This was especially the case during autumn when a latitudinal gradient in larval fish assemblages became more pronounced.

Strong genetic structure revealed by multilocus patterns of variation in Giardia duodenalis isolates of patients from Galicia (NW-Iberian Peninsula).

PubMed

Gabín-García, Luis B; Bartolomé, Carolina; Abal-Fabeiro, José L; Méndez, Santiago; Llovo, José; Maside, Xulio

2017-03-01

We report a survey of genetic variation at three coding loci in Giardia duodenalis of assemblages A and B obtained from stool samples of patients from Santiago de Compostela (Galicia, NW-Iberian Peninsula). The mean pooled synonymous diversity for assemblage A was nearly five times lower than for assemblage B (0.77%±0.30% and 4.14%±1.65%, respectively). Synonymous variation in both assemblages was in mutation-drift equilibrium and an excess of low-frequency nonsynonymous variants suggested the action of purifying selection at the three loci. Differences between isolates contributed to 40% and 60% of total genetic variance in assemblages A and B, respectively, which revealed a significant genetic structure. These results, together with the lack of evidence for recombination, support that (i) Giardia assemblages A and B are in demographic equilibrium and behave as two genetically isolated populations, (ii) infections are initiated by a reduced number of individuals, which may be genetically diverse and even belong to different assemblages, and (iii) parasites reproduce clonally within the host. However, the observation of invariant loci in some isolates means that mechanisms for the homogenization of the genetic content of the two diploid nuclei in each individual must exist. Copyright © 2016 Elsevier B.V. All rights reserved.

Biodiversity Analysis of Forest Litter Ant Assemblages in the Wayanad Region of Western Ghats Using Taxonomic and Conventional Diversity Measures

PubMed Central

Anu, Anto; Sabu, Thomas K.

2007-01-01

The diversity of litter ant assemblages in evergreen, deciduous and Shola evergreen (Shola) forest vegetation types of the Wayanad region of the Western Ghats was assessed employing conventional and taxonomic diversity indices. Non-dependence on quantitative data and the ability to relate the phylogenetic structure of assemblages with ecological conditions of the habitat, and to ascertain priorities for conservation of habitats, makes non-parametric taxonomic diversity measures, such as variation in taxonomic distinctness Λ+ and average taxonomic distinctness Δ+, highly useful tools for assessment of litter ant biodiversity. Although Δ+ values saturated leading to closer values for the 3 litter ant assemblages, Λ+ proved to be a more dependable index. Evenness in taxonomic spread was high in ant assemblages in deciduous forests and low in evergreen forests compared to the regional master list. Low Λ+ of ant assemblage in deciduous forests indicates that among the 3 forest vegetation types, deciduous forests provided the most favorable habitat conditions for litter ants. Low evenness, as is indicated by Λ+ in evergreen forests, was attributed to the presence of a group of taxonomically closely related ant assemblage more adapted to prevail in moist and wet ecological conditions. PMID:20334594

Protolith relations of the Gravina belt and Yukon-Tanana terrane in central southeastern Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

McClelland, W.C.; Gehrels, G.E.; Patchett, P.J.

1992-01-01

Metamorphic rocks west of the Coast Mountains batholith in central southeastern Alaska are divided into the Gravina belt, Taku terrane, and newly defined Ruth assemblage. The Ruth assemblage comprises metapelite, quartzose metaclastic strata, quartzite, marble, felsic metatuff, mafic metavolcanic rocks, and orthogneiss. Depositional and emplacement ages of 367 {plus minus} 10 Ma and 345 {plus minus} 13 Ma inferred from discordant U/Pb zircon analyses on felsic metatuff and granodioritic orthogneiss, respectively, require that at least portions of the Ruth assemblage be Late Devonian and early Mississippian in age. The assemblage is similar in age and protolith to, and thus correlatedmore » with, the Yukon-Tanana terrane. The Gravina belt is characterized by upper Jurassic and lower Cretaceous mafic volcanic rocks and tuffaceous turbiditic clastic strata that unconformably overlie the Alexander terrane. Metamorphic rocks that structurally underlie the Taku terrane and Rugh assemblage are included in this assemblage. Trace element geochemistry and the abundance of pyroclastic flows associated with tuffaceous turbidites suggest that the Gravina belt evolved in an intra-arc basinal setting. In central southeastern Alaska, the mid-Cretaceous structure that currently separates the Ruth assemblage (Yukon-Tanana correlative) from the Gravina belt marks the fundamental boundary between the Alexander-Wrangellia terrane and inboard Yukon-Tanana and Stikine terranes.« less

Effects of hydrologic connectivity and environmental nariables on nekton assemblage in a coastal marsh system

USGS Publications Warehouse

Kang, Sung-Ryong; King, Sammy L.

2013-01-01

Hydrologic connectivity and environmental variation can influence nekton assemblages in coastal ecosystems. We evaluated the effects of hydrologic connectivity (permanently connected pond: PCP; temporary connected pond: TCP), salinity, vegetation coverage, water depth and other environmental variables on seasonal nekton assemblages in freshwater, brackish, and saline marshes of the Chenier Plain, Louisiana, USA. We hypothesize that 1) nekton assemblages in PCPs have higher metrics (density, biomass, assemblage similarity) than TCPs within all marsh types and 2) no nekton species would be dominant across all marsh types. In throw traps, freshwater PCPs in Fall (36.0 ± 1.90) and Winter 2009 (43.2 ± 22.36) supported greater biomass than freshwater TCPs (Fall 2009: 9.1 ± 4.65; Winter 2009: 8.3 ± 3.42). In minnow traps, saline TCPs (5.9 ± 0.85) in Spring 2009 had higher catch per unit effort than saline PCPs (0.7 ± 0.67). Our data only partially support our first hypothesis as freshwater marsh PCPs had greater assemblage similarity than TCPs. As predicted by our second hypothesis, no nekton species dominated across all marsh types. Nekton assemblages were structured by individual species responses to the salinity gradient as well as pond habitat attributes (submerged aquatic vegetation coverage, dissolved oxygen, hydrologic connectivity).

Suprabenthic assemblages from the Capbreton area (SE Bay of Biscay). Faunal recovery after a canyon turbidity disturbance

NASA Astrophysics Data System (ADS)

Frutos, Inmaculada; Sorbe, Jean Claude

2017-12-01

In the Capbreton area, suprabenthic assemblages were sampled with a sledge towed over the bottom, at different sites located within the upper part of a 'gouf-type' canyon (8 hauls between 642 m and 797 m, on the axis of the thalweg or on flat perched flank terraces such as site K), on the northern adjacent open slope (2 hauls between 500 and 567 m) and on the northern adjacent shelf margin (2 hauls between 151 m and 158 m). A multivariate analysis carried on the faunal data discriminated different assemblages in this area: a near-canyon shelf assemblage (55 species, mainly amphipods and decapods; 3496 ind./100 m2, 40% mysids; dominant species: Nyctiphanes couchii, Leptomysis gracilis, Weswoodilla rectirostris, Anchialina agilis, Scopelocheirus hopei and Philocheras bispinosus); an open slope assemblage (111 species, mainly amphipods and isopods; 249 ind./100 m2, 36% amphipods; dominant species: Disconectes phalangium, Munnopsurus atlanticus and Boreomysis arctica); a canyon E assemblage (129 species, mainly amphipods, mysids and cumaceans; 1172 ind./100 m2, 58% amphipods; dominant species: Melphidippa sp. B, Chelator insignis); a canyon E' assemblage (107 species, mainly amphipods and mysids; 507 ind./100 m2, 73% amphipods; dominant species: Cleonardopsis carinata, Bonnierella abyssorum, Rhachotropis caeca and Arcturopsis giardi); and a temporary canyon assemblage at site K (34 species, mainly amphipods and mysids; 899 ind./100 m2, 85% amphipods; dominant species: Tmetomyx similis, Caeconyx caeculus, Nebalia sp. A and Cleonardopsis carinata). Site K was sampled only four months after a turbidity event, detected on sediment cores (18 cm thick Bouma sequence) taken during the same cruise and triggered by the violent storm ('ouragan Martin', wind up to 200 km/h) which affected the French Atlantic coast on 27 December 1999. The corresponding suprabenthic assemblage showed evidence of deep structural changes after this catastrophic event, characterized by relative low values of species richness and diversity indices and by the exceptional dominance of opportunistic pioneer colonizers such as the scavenger Tmetonyx similis (61% of total density). Partial assemblage recovery was noticed 18 months after the turbidite deposition, attested by higher values of structural indices and by the inclusion of the corresponding sample within the climax canyon assemblage cluster.

Garnet breakdown in some deep seated garnetiferous xenoliths from the central Sierra Nevada: Petrologic and tectonic implications

NASA Astrophysics Data System (ADS)

Mukhopadhyay, Biswajit

1991-06-01

Garnets in garnetiferous xenoliths from Big Creek, Pick and Shovel and Chinese Peak volcanic pipes, occurring along the axial region of the Sierra Nevada batholith, have broken down to variable degrees to optically opaque and extremely fine-grained kelyphitic rims and seams. In some cases, only opaque pseudomorphs of garnet remain; in others, garnet occurs only as a tiny relict within an opaque mass; in still others, the kelyphite forms a rim and pervades the garnet grain in a complex reticulate fashion. Backscattered-electron imaging and electron microprobe analyses reveal that the unaltered portions of garnets exhibit negligible compositional variations. The unaltered portion is often surrounded by a resorbed rim whose composition is slightly different from that of the bulk garnet; however no systematic difference occurs between the compositions of resorbed rims and those of the unaltered garnets. Around the resorbed rim, lies a zone composed of symplectic intergrowths of aluminous spinel, aluminous orthopyroxene and calcic plagioclase (An 91). Compositions of the symplectite spinels and orthopyroxenes are different from the compositions of those occurring as major discrete phases in the rocks. The possibility that the kelyphites results from oxidation is ruled out. Two alternatives for the origin of these kelyphites seem viable. In the first, they are the result of isochemical decomposition of garnet due to transport by the host lavas from depth to the surface. In the second, they are produced by breakdown and retrogression of garnet due to tectonic transport of the precursor rocks from high P- T conditions to lower P- T conditions before their incorporation into the host volcanics. The second alternative is favored and is supported by the following arguments: (1) Decompression due to transport of the xenoliths by the volcanics should essentially take place along an adiabat and would most likely cause partial melting. No melt phase was found in the symplectites. (2) Such rapid adiabatic decompression would arrest the original high P- T condition of equilibration of the primary xenolith mineralogy. The P- T conditions of equilibration of the primary xenolith mineral assemblages are found to range from the 11-24 kbar and 600-900°C. These low P- T conditions indeed indicate a re-equilibration of the primary mineral assemblages at a shallower depth. (3) The garnet breakdown reaction also involved clinopyroxene and produced an overgrowth of Fe- and Al-rich and Na-poor clinopyroxene around the primary clinopyroxene. (4) Using the known phase compositions, a balanced reaction, which involves primary phases and the symplectite phases, can be written. (5) Thermodynamic modelling of the garnet breakdown phenomenon according to the reaction: CaMgSi 2O 6 + 2Mg 3Al 2Si 3O 12=3Mg 2Si 2O 6 + CaAl 2Si 2O 8 + MgAl 2O 4 yields the P- T condition for garnet breakdown at 841°C-15 kbar for the sample PS-10, for example. The original subsolidus re-equilibration P- T condition of the primary mineral assemblages for this sample is calculated as 892°C-23 kbar. This calculation signifies uplift of the subsolidus garnet clinopyroxenite assemblage along a superadiabatic P- T path. The hypothesis set forth in turn suggests movement of the solid crust-mantle segments along a superadiabatic path from a high P- T regime to lower P- T conditions. Thus the crust-mantle segments underlying the Sierra Nevada batholith, represented by the xenoliths, originated at a greater depth and were tectonically uplifted prior to becoming entrained within the volcanic hosts. This dynamic model is compatible with the geological scenario of the western United States.

Characterisation of Ba(OH){sub 2}–Na{sub 2}SO{sub 4}–blast furnace slag cement-like composites for the immobilisation of sulfate bearing nuclear wastes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mobasher, Neda; Bernal, Susan A.; Hussain, Oday H.

2014-12-15

Soluble sulfate ions in nuclear waste can have detrimental effects on cementitious wasteforms and disposal facilities based on Portland cement. As an alternative, Ba(OH){sub 2}–Na{sub 2}SO{sub 4}–blast furnace slag composites are studied for immobilisation of sulfate-bearing nuclear wastes. Calcium aluminosilicate hydrate (C–A–S–H) with some barium substitution is the main binder phase, with barium also present in the low solubility salts BaSO{sub 4} and BaCO{sub 3}, along with Ba-substituted calcium sulfoaluminate hydrates, and a hydrotalcite-type layered double hydroxide. This reaction product assemblage indicates that Ba(OH){sub 2} and Na{sub 2}SO{sub 4} act as alkaline activators and control the reaction of the slagmore » in addition to forming insoluble BaSO{sub 4}, and this restricts sulfate availability for further reaction as long as sufficient Ba(OH){sub 2} is added. An increased content of Ba(OH){sub 2} promotes a higher degree of reaction, and the formation of a highly cross-linked C–A–S–H gel. These Ba(OH){sub 2}–Na{sub 2}SO{sub 4}–blast furnace slag composite binders could be effective in the immobilisation of sulfate-bearing nuclear wastes.« less

What makes African American health disparities newsworthy? An experiment among journalists about story framing

PubMed Central

Hinnant, Amanda; Oh, Hyun Jee; Caburnay, Charlene A.; Kreuter, Matthew W.

2011-01-01

News stories reporting race-specific health information commonly emphasize disparities between racial groups. But recent research suggests this focus on disparities has unintended effects on African American audiences, generating negative emotions and less interest in preventive behaviors (Nicholson RA, Kreuter MW, Lapka C et al. Unintended effects of emphasizing disparities in cancer communication to African-Americans. Cancer Epidemiol Biomarkers Prev 2008; 17: 2946–52). They found that black adults are more interested in cancer screening after reading about the progress African Americans have made in fighting cancer than after reading stories emphasizing disparities between blacks and whites. This study builds on past findings by (i) examining how health journalists judge the newsworthiness of stories that report race-specific health information by emphasizing disparities versus progress and (ii) determining whether these judgments can be changed by informing journalists of audience reactions to disparity versus progress framing. In a double-blind-randomized experiment, 175 health journalists read either a disparity- or progress-framed story on colon cancer, preceded by either an inoculation about audience effects of such framing or an unrelated (i.e. control) information stimuli. Journalists rated the disparity-frame story more favorably than the progress-frame story in every category of news values. However, the inoculation significantly increased positive reactions to the progress-frame story. Informing journalists of audience reactions to race-specific health information could influence how health news stories are framed. PMID:21911844

Thermal and Kinetic Modelling of Elastomer Flow—Application to an Extrusion Die

NASA Astrophysics Data System (ADS)

Launay, J.; Allanic, N.; Mousseau, P.; Deterre, R.

2011-05-01

This paper reports and discusses the thermal and kinetic behaviour of elastomer flow inside an extrusion die. The reaction progress through the runner was modeled by using a particle tracking technique. The aim is to analyze viscous dissipation phenomena to control scorch arisen, improve the rubber compound curing homogeneity and reduce the heating time in the mould using the progress of the induction time. The heat and momentum equations were solved in three dimensions with Ansys Polyflow. A particle tracking technique was set up to calculate the reaction progress. Several simulations were performed to highlight the influence of process parameters and geometry modifications on the rubber compound thermal and cure homogeneity.

A TEM study of disequilibrium plagioclase breakdown at high pressure: the role of infiltrating fluid

NASA Astrophysics Data System (ADS)

Wayte, Gavin J.; Worden, Richard H.; Rubie, David C.; Droop, Giles T. R.

1989-04-01

High-pressure metamorphism (˜600° C, ˜20 kbar) of the Allalin Gabbro (Western Alps) resulted in the breakdown of plagioclase (˜An63) to fine-grained zoisite, jadeite, kyanite and quartz. In rare cases this reaction failed to reach completion. The resulting textures of partial reaction have been studied by transmission and analytical electron microscopy. In localised regions of a plagioclase crystal where the extent of reaction is <10%, only zoisite developed and the orientation relationship 1 410_2004_Article_BF00372216_TeX2GIFE1.gif left( {100} right)_{{text{Zo}}} //left( {101} right)_{{text{P1}}} and 1 410_2004_Article_BF00372216_TeX2GIFE2.gif left( {012} right)_{{text{Zo}}} //left( {010} right)_{{text{P1}}} is frequently present. In regions where 10 50% of plagioclase has transformed, the reaction plagioclase+H2O→zoisite+kyanite+quartz +(NaSiCa-1Al-1)pl has occurred. The systematic orientation relationship between plagioclase and zoisite is absent at ≥50% transformation. Complete breakdown of plagioclase occurred in localized micron-scale domains by the reaction plagioclase+H2O→zoisite+jadeite+kyanite+quartz and the reaction products are variably orientated with respect to each other. Incomplete reaction, together with the concentration of reaction products around cracks in original plagioclase grains, suggests that extent of reaction was controlled primarily by the availability of H2O. The textural observations are interpreted in terms of two possible disequilibrium reaction models. (1) Plagioclase persists metastably with its original igneous composition to a pressure > 17 kbar at 600° C. Reaction to the equilibrium assemblage then develops adjacent to cracks in response to the presence of aqueous fluid. At intracrystalline sites, only partial reaction occurs because Jadeite, and sometimes kyanite and quartz, fail to nucleate for kinetic reasons. (2) Localized regions of a plagioclase crystal partially equilibrate at several stages during the increase of pressure (˜9 17 kbar at 600° C), possibly due to discrete episodes of fluid infiltration. In both these models, the extent of reaction may be limited by NaSi-CaAl interdiffusion in plagioclase.

Soil ecosystem function under native and exotic plant assemblages as alternative states of successional grasslands

NASA Astrophysics Data System (ADS)

Spirito, Florencia; Yahdjian, Laura; Tognetti, Pedro M.; Chaneton, Enrique J.

2014-01-01

Old fields often become dominated by exotic plants establishing persistent community states. Ecosystem functioning may differ widely between such novel communities and the native-dominated counterparts. We evaluated soil ecosystem attributes in native and exotic (synthetic) grass assemblages established on a newly abandoned field, and in remnants of native grassland in the Inland Pampa, Argentina. We asked whether exotic species alter soil functioning through the quality of the litter they shed or by changing the decomposition environment. Litter decomposition of the exotic dominant Festuca arundinacea in exotic assemblages was faster than that of the native dominant Paspalum quadrifarium in native assemblages and remnant grasslands. Decomposition of a standard litter (Triticum aestivum) was also faster in exotic assemblages than in native assemblages and remnant grasslands. In a common garden, F. arundinacea showed higher decay rates than P. quadrifarium, which reflected the higher N content and lower C:N of the exotic grass litter. Soil respiration rates were higher in the exotic than in the native assemblages and remnant grasslands. Yet there were no significant differences in soil N availability or net N mineralization between exotic and native assemblages. Our results suggest that exotic grass dominance affected ecosystem function by producing a more decomposable leaf litter and by increasing soil decomposer activity. These changes might contribute to the extended dominance of fast-growing exotic grasses during old-field succession. Further, increased organic matter turnover under novel, exotic communities could reduce the carbon storage capacity of the system in the long term.

Groundwater declines are linked to changes in Great Plains stream fish assemblages

USGS Publications Warehouse

Prekins, Joshuah S.; Gido, Keith B.; Falke, Jeffrey A.; Fausch, Kurt D.; Crockett, Harry; Johnson, Eric R.; Sanderson, John

2017-01-01

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950–2010) and prospective (2011–2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

Fish assemblages in borrow-pit lakes of the Lower Mississippi River

USGS Publications Warehouse

Miranda, Leandro E.; Killgore, K. J.; Hoover, J.J.

2013-01-01

Borrow-pit lakes encompass about a third of the lentic water habitats (by area) in the active floodplain of the Lower Mississippi River, yet little is known about their fish assemblages. We investigated whether fish assemblages supported by borrow-pit lakes resembled those in oxbow lakes to help place the ecological relevance of borrow-pit lakes in context with that of natural floodplain lakes. In all, we collected 75 fish species, including 65 species in eight borrow-pit lakes, 52 species in four riverside oxbow lakes, and 44 species in eight landside oxbow lakes. Significant differences in several species richness metrics were evident between borrow-pit lakes and landside oxbow lakes but not between borrow-pit lakes and riverside oxbow lakes. All three lake types differed in fish assemblage composition. Borrow-pit lakes and riverside oxbow lakes tended to include a greater representation of fish species that require access to diverse environments, including lentic, lotic, and palustrine habitats; fish assemblages in landside oxbow lakes included a higher representation of lacustrine species. None of the fish species collected in borrow-pit lakes was federally listed as threatened or endangered, but several were listed as species of special concern by state governments in the region, suggesting that borrow-pit lakes provide habitat for sensitive riverine and wetland fish species. Differences in fish assemblages among borrow-pit lakes were linked to engineered morphologic features, suggesting that diversity in engineering can contribute to diversity in fish assemblages; however, more research is needed to match engineering designs with fish assemblage structures that best meet conservation needs.

Spatial variability in intertidal macroalgal assemblages on the North Portuguese coast: consistence between species and functional group approaches

NASA Astrophysics Data System (ADS)

Veiga, P.; Rubal, M.; Vieira, R.; Arenas, F.; Sousa-Pinto, I.

2013-03-01

Natural assemblages are variable in space and time; therefore, quantification of their variability is imperative to identify relevant scales for investigating natural or anthropogenic processes shaping these assemblages. We studied the variability of intertidal macroalgal assemblages on the North Portuguese coast, considering three spatial scales (from metres to 10 s of kilometres) following a hierarchical design. We tested the hypotheses that (1) spatial pattern will be invariant at all the studied scales and (2) spatial variability of macroalgal assemblages obtained by using species will be consistent with that obtained using functional groups. This was done considering as univariate variables: total biomass and number of taxa as well as biomass of the most important species and functional groups and as multivariate variables the structure of macroalgal assemblages, both considering species and functional groups. Most of the univariate results confirmed the first hypothesis except for the total number of taxa and foliose macroalgae that showed significant variability at the scale of site and area, respectively. In contrast, when multivariate patterns were examined, the first hypothesis was rejected except at the scale of 10 s of kilometres. Both uni- and multivariate results indicated that variation was larger at the smallest scale, and thus, small-scale processes seem to have more effect on spatial variability patterns. Macroalgal assemblages, both considering species and functional groups as surrogate, showed consistent spatial patterns, and therefore, the second hypothesis was confirmed. Consequently, functional groups may be considered a reliable biological surrogate to study changes on macroalgal assemblages at least along the investigated Portuguese coastline.

Groundwater declines are linked to changes in Great Plains stream fish assemblages.

PubMed

Perkin, Joshuah S; Gido, Keith B; Falke, Jeffrey A; Fausch, Kurt D; Crockett, Harry; Johnson, Eric R; Sanderson, John

2017-07-11

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950-2010) and prospective (2011-2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

Effectiveness of benthic foraminiferal and coral assemblages as water quality indicators on inshore reefs of the Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

Uthicke, S.; Thompson, A.; Schaffelke, B.

2010-03-01

Although the debate about coral reef decline focuses on global disturbances (e.g., increasing temperatures and acidification), local stressors (nutrient runoff and overfishing) continue to affect reef health and resilience. The effectiveness of foraminiferal and hard-coral assemblages as indicators of changes in water quality was assessed on 27 inshore reefs along the Great Barrier Reef. Environmental variables (i.e., several water quality and sediment parameters) and the composition of both benthic foraminiferal and hard-coral assemblages differed significantly between four regions (Whitsunday, Burdekin, Fitzroy, and the Wet Tropics). Grain size and organic carbon and nitrogen content of sediments, and a composite water column parameter (based on turbidity and concentrations of particulate matter) explained a significant amount of variation in the data (tested by redundancy analyses) in both assemblages. Heterotrophic species of foraminifera were dominant in sediments with high organic content and in localities with low light availability, whereas symbiont-bearing mixotrophic species were dominant elsewhere. A similar suite of parameters explained 89% of the variation in the FORAM index (a Caribbean coral reef health indicator) and 61% in foraminiferal species richness. Coral richness was not related to environmental setting. Coral assemblages varied in response to environmental variables, but were strongly shaped by acute disturbances (e.g., cyclones, Acanthaster planci outbreaks, and bleaching), thus different coral assemblages may be found at sites with the same environmental conditions. Disturbances also affect foraminiferal assemblages, but they appeared to recover more rapidly than corals. Foraminiferal assemblages are effective bioindicators of turbidity/light regimes and organic enrichment of sediments on coral reefs.

Species richness and trait composition of butterfly assemblages change along an altitudinal gradient.

PubMed

Leingärtner, Annette; Krauss, Jochen; Steffan-Dewenter, Ingolf

2014-06-01

Species richness patterns along altitudinal gradients are well-documented ecological phenomena, yet very little data are available on how environmental filtering processes influence the composition and traits of butterfly assemblages at high altitudes. We have studied the diversity patterns of butterfly species at 34 sites along an altitudinal gradient ranging from 600 to 2,000 m a.s.l. in the National Park Berchtesgaden (Germany) and analysed traits of butterfly assemblages associated with dispersal capacity, reproductive strategies and developmental time from lowlands to highlands, including phylogenetic analyses. We found a linear decline in butterfly species richness along the altitudinal gradient, but the phylogenetic relatedness of the butterfly assemblages did not increase with altitude. Compared to butterfly assemblages at lower altitudes, those at higher altitudes were composed of species with larger wings (on average 9%) which laid an average of 68% more eggs. In contrast, egg maturation time in butterfly assemblages decreased by about 22% along the altitudinal gradient. Further, butterfly assemblages at higher altitudes were increasingly dominated by less widespread species. Based on our abundance data, but not on data in the literature, population density increased with altitude, suggesting a reversed density-distribution relationship, with higher population densities of habitat specialists in harsh environments. In conclusion, our data provide evidence for significant shifts in the composition of butterfly assemblages and for the dominance of different traits along the altitudinal gradient. In our study, these changes were mainly driven by environmental factors, whereas phylogenetic filtering played a minor role along the studied altitudinal range.

Groundwater declines are linked to changes in Great Plains stream fish assemblages

PubMed Central

Perkin, Joshuah S.; Gido, Keith B.; Falke, Jeffrey A.; Fausch, Kurt D.; Crockett, Harry; Johnson, Eric R.; Sanderson, John

2017-01-01

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950–2010) and prospective (2011–2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur. PMID:28652354

Urbanization-induced habitat fragmentation erodes multiple components of temporal diversity in a Southern California native bee assemblage

PubMed Central

Ascher, John S.; Holway, David A.

2017-01-01

Despite a large number of ecological studies that document diversity loss resulting from anthropogenic disturbance, surprisingly few consider how disturbance affects temporal patterns of diversity that result from seasonal turnover of species. Temporal dynamics can play an important role in the structure and function of biological assemblages. Here, we investigate the temporal diversity patterns of bee faunas in Southern California coastal sage scrub ecosystems that have been extensively fragmented by urbanization. Using a two-year dataset of 235 bee species (n = 12,036 specimens), we compared 1-ha plots in scrub fragments and scrub reserves with respect to three components of temporal diversity: overall plot-level diversity pooled over time (temporal gamma diversity), diversity at discrete points in time (temporal alpha diversity), and seasonal turnover in assemblage composition (temporal beta diversity). Compared to reserves, fragments harbored bee assemblages with lower species richness and assemblage evenness both when summed across temporal samples (i.e., lower temporal gamma diversity) and at single points in time (i.e., lower temporal alpha diversity). Bee assemblages in fragments also exhibited reduced seasonal turnover (i.e., lower temporal beta diversity). While fragments and reserves did not differ in overall bee abundance, bee abundance in fragments peaked later in the season compared to that in reserves. Our results argue for an increased awareness of temporal diversity patterns, as information about the distinct components of temporal diversity is essential both for characterizing the assemblage dynamics of seasonal organisms and for identifying potential impacts of anthropogenic disturbance on ecosystem function through its effects on assemblage dynamics. PMID:28854229

A PROCESS FOR DEVELOPING AND EVALUATING INDICIES OF FISH ASSEMBLAGE INTEGRITY

EPA Science Inventory

We describe a general process for developing an index of fish assemblage integrity, using the Willamette Valley of Oregon, U.S.A., as an example. Such an index is useful for assessing the effects of humans on entire fish assemblages, and the general process can be applied to any ...

The Measurement of Motor Skill Assemblages and Successful Selection

ERIC Educational Resources Information Center

Worrall, N. R.

1974-01-01

This paper defines the required abilities for a given job as a Task Skill Assemblage (TSA), and the stored skill and knowledge is possessed by a candidate for that job as the Personal Skill Assemblage (PSA). A method is suggested for measuring the degree of match between the TSA and PSA. (Author)

Lunch Time at the Child Care Centre: Neoliberal Assemblages in Early Childhood Education

ERIC Educational Resources Information Center

Nxumalo, Fikile; Pacini-Ketchabaw, Veronica; Rowan, Mary Caroline

2011-01-01

In this article we interrogate neoliberal assemblages within the context of eating and feeding practices in early childhood education. We consider how neoliberal assemblages are enacted and created through multiple linkages between micro and macro regulations and policies, and everyday food routines. We attend to the embodied intensities, desires…

Deep faunistic turnovers preceded the rise of dinosaurs in southwestern Pangaea.

PubMed

Ezcurra, Martín D; Fiorelli, Lucas E; Martinelli, Agustín G; Rocher, Sebastián; von Baczko, M Belén; Ezpeleta, Miguel; Taborda, Jeremías R A; Hechenleitner, E Martín; Trotteyn, M Jimena; Desojo, Julia B

2017-10-01

The Triassic period documents the origin and diversification of modern amniote lineages and the Late Triassic fossil record of South America has been crucial to shed light on these early evolutionary histories. However, the faunistic changes that led to the establishment of Late Triassic ecosystems are largely ignored because of the global scarcity of fossils from assemblages a few million years older. Here we contribute to fill this gap with the description of a new tetrapod assemblage from the lowermost levels of the Chañares Formation (uppermost Middle-lower Late Triassic epochs) of Argentina, which is older than the other vertebrate assemblages of the same basin. The new assemblage is composed of therapsids, rhynchosaurids and archosaurs, and clearly differs from that of the immediately overlying and well-known historical Chañares vertebrate assemblage. The new tetrapod association is part of a phase of relatively rapidly changing vertebrate assemblage compositions, in a time span shorter than 6 million years, before the diversification of dinosaurs and other common Late Triassic tetrapods in southwestern Pangaea.

Faunas of Mississippian oolitic limestones: Evidence from Salem Limestone, southern Indiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feldman, H.R.

In the Salem Limestone of southern Indiana, a correlation exists between the faunal assemblage and abundance of grains with superficial oolitic coatings in grainstones. Coarse, poorly sorted fossiliferous grainstones are dominated by an echinoderm-bryozoan-brachiopod assemblage of fossils with few mollusks. The presence of large whole fossils, such as articulated crinoid calyces, suggest limited transport of skeletal components. Grainstones, dominated by grains with superficial coatings, and foraminifers tend to contain a diverse mollusk-dominated assemblage of gastropods, bivalves, rostroconchs, chitins, and scaphopods. These fossils are disarticulated, but generally are not fragmented even though many of them are thin and delicate. Echinoderms, brachiopods,more » and bryozoans are repsented in the mollusk-domdinated assemblage almost exclusively by well-rounded and coated fragments, suggesting that they are not in situ. The presence of similar molluscan assemblages in other Mississippian coated-grain grainstones from Alabama (the Monteagle Limestone) and Oklahoma (an unnamed limestone) indicates that the assemblage may have been wide-spread. Mississippian grainstones dominated by oolites (which are not prominent in the Salem) generally have very few fossils.« less

Foraminiferal assemblages in Biscayne Bay, Florida, USA: Responses to urban and agricultural influence in a subtropical estuary

USGS Publications Warehouse

Carnahan, E.A.; Hoare, A.M.; Hallock, P.; Lidz, B.H.; Reich, C.D.

2009-01-01

This study assessed foraminiferal assemblages in Biscayne Bay, Florida, a heavily utilized estuary, interpreting changes over the past 65 years and providing a baseline for future comparisons. Analyses of foraminiferal data at the genus level revealed three distinct biotopes. The assemblage from the northern bay was characterized by stress-tolerant taxa, especially Ammonia, present in low abundances (???2.0 ?? 103 foraminifers/gram) though relatively high diversity (???19 genera/sample). The southwestern margin of the bay was dominated by Ammonia and Quinqueloculina, an assemblage characterized by the lowest diversities (???12 genera/sample) and highest abundances (???1.1 ?? 104 foraminifers/gram), influenced by both reduced salinity and elevated organic-carbon concentrations. A diverse assemblage of smaller miliolids and rotaliids (???26 genera/sample) characterized the open-bay assemblage, which also had a significant component (???10%) of taxa that host algal endosymbionts. In the past 65 years, populations of symbiont-bearing taxa, which are indicators of normal-marine conditions, have decreased while stress-tolerant taxa, especially Ammonia spp., have increased in predominance. ?? 2009 Elsevier Ltd.

Demersal fish assemblages off southern New Zealand in relation to depth and temperature

NASA Astrophysics Data System (ADS)

Jacob, W.; McClatchie, S.; Probert, P. K.; Hurst, R. J.

1998-12-01

We examined the relationship between demersal fish assemblage and depth, temperature, latitude and longitude off southern New Zealand (46-54°S and 165-180°E) in water depths of 80-787 m. Catch weight data were analysed by two-way indicator analysis (TWIA), groupaverage agglomerative clustering (UPGMA) and Detrended Correspondence Analysis (DCA). The spatial pattern of demersal fish off southern New Zealand conforms to the concept of species groups or fish assemblages related to environmental gradients. Shallow-water assemblages were dominated by species from the families Gempylidae, Squalidae, Triakidae and Moridae, mainly represented by Thyrsites atun, Squalus acanthias, Galeorhinus australis, and Pseudophycis bachus. Deep water assemblages were dominated by Chimaeridae, Argentinidae, Merlucciidae and Macrouridae, mainly represented by Hydrolagus novaezelandiae, Argentina elongata, Macruronus novaezelandiae, and Lepidorhynchus denticulatus. Total catch weight was often dominated by Merlucciidae, Macrouridae and Gempylidae. Fish assemblages were related to discrete ranges of depth (< and >300 m) and temperature (< and >9.5°C), but the range of sediment types was too narrow to show any correlation.

Role of riparian shade on the fish assemblage of a reservoir littoral

USGS Publications Warehouse

Raines, C. D.; Miranda, Leandro E.

2016-01-01

Research into the effects of shade on reservoir fish assemblages is lacking, with most investigations focused on streams. Unlike many streams, the canopy in a reservoir shades only a narrow fringe of water adjacent to the shoreline, and may not have the influential effect on the aquatic environment reported in streams. We compared fish assemblages between shaded and unshaded sites in a shallow reservoir. Overall species richness (gamma diversity) was higher in shaded sites, and fish assemblage composition differed between shaded and unshaded sites. Average light intensity was 66 % lower in shaded sites, and differences in average temperature and dissolved oxygen were small. Unlike streams where shade can have large effects on water physicochemistry, in reservoirs shade-related differences in fish assemblages seemed to be linked principally to differences in light intensity. Diversity in light intensity in shaded and unshaded sites in reservoirs can create various mosaics of light-based habitats that enable diversity of species assemblages. Managing to promote the habitat diversity provided by shade may require coping with the artificial nature of reservoir riparian zones and water level fluctuations.

Taking the plunge: chemical reaction dynamics in liquids.

PubMed

Orr-Ewing, Andrew J

2017-12-11

The dynamics of chemical reactions in liquid solutions are now amenable to direct study using ultrafast laser spectroscopy techniques and advances in computer simulation methods. The surrounding solvent affects the chemical reaction dynamics in numerous ways, which include: (i) formation of complexes between reactants and solvent molecules; (ii) modifications to transition state energies and structures relative to the reactants and products; (iii) coupling between the motions of the reacting molecules and the solvent modes, and exchange of energy; (iv) solvent caging of reactants and products; and (v) structural changes to the solvation shells in response to the changing chemical identity of the solutes, on timescales which may be slower than the reactive events. This article reviews progress in the study of bimolecular chemical reaction dynamics in solution, concentrating on reactions which occur on ground electronic states. It illustrates this progress with reference to recent experimental and computational studies, and considers how the various ways in which a solvent affects the chemical reaction dynamics can be unravelled. Implications are considered for research in fields such as mechanistic synthetic chemistry.

Frontiers in Chemistry.

ERIC Educational Resources Information Center

Joyce, Robert M., Ed.

1980-01-01

This article describes recent progress in chemical synthesis which depends on comparable advances in other areas of chemistry. Analysis and theories of chemical structure and reactions are determinants in progress in chemical synthesis and are described also. (Author/SA)

Hierarchically Nanostructured Transition Metal Oxides for Lithium‐Ion Batteries

PubMed Central

Zheng, Mingbo; Tang, Hao; Li, Lulu; Hu, Qin; Zhang, Li; Xue, Huaiguo

2018-01-01

Abstract Lithium‐ion batteries (LIBs) have been widely used in the field of portable electric devices because of their high energy density and long cycling life. To further improve the performance of LIBs, it is of great importance to develop new electrode materials. Various transition metal oxides (TMOs) have been extensively investigated as electrode materials for LIBs. According to the reaction mechanism, there are mainly two kinds of TMOs, one is based on conversion reaction and the other is based on intercalation/deintercalation reaction. Recently, hierarchically nanostructured TMOs have become a hot research area in the field of LIBs. Hierarchical architecture can provide numerous accessible electroactive sites for redox reactions, shorten the diffusion distance of Li‐ion during the reaction, and accommodate volume expansion during cycling. With rapid research progress in this field, a timely account of this advanced technology is highly necessary. Here, the research progress on the synthesis methods, morphological characteristics, and electrochemical performances of hierarchically nanostructured TMOs for LIBs is summarized and discussed. Some relevant prospects are also proposed. PMID:29593962

Hierarchically Nanostructured Transition Metal Oxides for Lithium-Ion Batteries.

PubMed

Zheng, Mingbo; Tang, Hao; Li, Lulu; Hu, Qin; Zhang, Li; Xue, Huaiguo; Pang, Huan

2018-03-01

Lithium-ion batteries (LIBs) have been widely used in the field of portable electric devices because of their high energy density and long cycling life. To further improve the performance of LIBs, it is of great importance to develop new electrode materials. Various transition metal oxides (TMOs) have been extensively investigated as electrode materials for LIBs. According to the reaction mechanism, there are mainly two kinds of TMOs, one is based on conversion reaction and the other is based on intercalation/deintercalation reaction. Recently, hierarchically nanostructured TMOs have become a hot research area in the field of LIBs. Hierarchical architecture can provide numerous accessible electroactive sites for redox reactions, shorten the diffusion distance of Li-ion during the reaction, and accommodate volume expansion during cycling. With rapid research progress in this field, a timely account of this advanced technology is highly necessary. Here, the research progress on the synthesis methods, morphological characteristics, and electrochemical performances of hierarchically nanostructured TMOs for LIBs is summarized and discussed. Some relevant prospects are also proposed.

U-series dating of the Late Pleistocene mammalian fauna from Wood Quarry (Steetley), Nottinghamshire, UK

NASA Astrophysics Data System (ADS)

Pike, A. W. G.; Eggins, S.; Grün, R.; Hedges, R. E. M.; Jacobi, R. M.

2005-01-01

We present the U-series dating of bones from Wood Quarry (Steetley Quarry Cave) using the diffusion-adsorption model to account for uranium uptake. The results give a weighted mean date of 66.8 ± 3.0 kyr, placing this assemblage within or just before Marine Oxygen Isotope Stage 4. The fauna is thought to correlate with the Banwell Bone Cave mammal assemblage-zone of the Early Devensian in Britain. Our results support the idea that this assemblage-zone immediately precedes the assemblage represented nearby at Pin Hole in Creswell Crags which is contemporary with the Mid-Devensian and correlates with MIS 3. Our dates, and dates for the Banwell Bone Cave mammal assemblage-zone from Stump Cross Cavern and evidence from other sites may indicate a longevity for this fauna.

Coral reef fish assemblages along a disturbance gradient in the northern Persian Gulf: A seasonal perspective.

PubMed

Ghazilou, Amir; Shokri, Mohammad Reza; Gladstone, William

2016-04-30

Seasonal dynamics of coral reef fish assemblages were assessed along a gradient of potential anthropogenic disturbance in the Northern Persian Gulf. Overall, the attributes of coral reef fish assemblages showed seasonality at two different levels: seasonal changes irrespective of the magnitude of disturbance level (e.g. species richness), and seasonal changes in response to disturbance level (e.g. total abundance and assemblage composition). The examined parameters mostly belonged to the second group, but the interpretation of the relationship between patterns of seasonal changes and the disturbance level was not straightforward. The abundance of carnivorous fishes did not vary among seasons. SIMPER identified the family Nemipteridae as the major contributor to the observed spatiotemporal variations in the composition of coral reef fish assemblages in the study area. Copyright © 2015 Elsevier Ltd. All rights reserved.

Species dominance and equitability: patterns in Cenozoic foraminifera of eastern North America

USGS Publications Warehouse

Gibson, T.G.; Hill, E.E.

1992-01-01

Species dominance in benthonic foraminifera, represented by percent of the assemblage composed of the single most abundant species, shows little change in observed range of values from shallow into deep-marine waters in 1005 samples from the Gulf of Mexico, Atlantic, and Arctic margins of North America. This finding contrasts with the model that species dominance is highest in shallow-marine environments and decreases offshore into deeper marine waters. Equitability, the relation of all species abundances within an assemblage, also shows little change between the values found in shallow-marine assemblages and those found in assemblages from deeper water environments. Equitability and dominance values found in 421 assemblages from Palaeocene, Eocene, Miocene, and Pleistocene strata of the Atlantic and E Gulf of Mexico coastal plains are similar to the modern values. -from Authors

Anthropogenic water bodies as drought refuge for aquatic macroinvertebrates and macrophytes.

PubMed

Dodemaide, David T; Matthews, Ty G; Iervasi, Dion; Lester, Rebecca E

2018-03-01

Ecological research associated with the importance of refuges has tended to focus on natural rather than anthropogenic water bodies. The frequency of disturbances, including drought events, is predicted to increase in many regions worldwide due to human-induced climate change. More frequent disturbance will affect freshwater ecosystems by altering hydrologic regimes, water chemistry, available habitat and assemblage structure. Under this scenario, many aquatic biota are likely to rely on permanent water bodies as refuge, including anthropogenic water bodies. Here, macroinvertebrate and macrophyte assemblages from waste-water treatment and raw-water storages (i.e. untreated potable water) were compared with nearby natural water bodies during autumn and winter 2013. We expected macroinvertebrate and macrophyte assemblages in raw-water storages to be representative of natural water bodies, while waste-water treatment storages would not, due to degraded water quality. However, water quality in natural water bodies differed from raw-water storages but was similar to waste-water treatment storages. Macroinvertebrate patterns matched those of water quality, with no differences occurring between natural water bodies and waste-water treatment storages, but assemblages in raw-water storages differed from the other two water bodies. Unexpectedly, differences associated with raw-water storages were attributable to low abundances of several taxa. Macrophyte assemblages in raw-water storages were representative of natural water bodies, but were less diverse and abundant in, or absent from, waste-water treatment storages. No clear correlations existed between any habitat variables and macroinvertebrate assemblages but a significant correlation between macrophyte assemblages and habitat characteristics existed. Thus, there were similarities in both water quality and macroinvertebrate assemblages between natural water bodies and waste-water treatment storages, and similarities in macrophyte assemblages between raw-water storages and natural water bodies. These similarities illustrate that anthropogenic water storages support representative populations of some aquatic biota across the landscape, and thus, may provide important refuge following disturbance where dispersal capabilities allow. Copyright © 2017 Elsevier B.V. All rights reserved.

The identification of a new Giardia duodenalis assemblage in marine vertebrates and a preliminary analysis of G. duodenalis population biology in marine systems.

PubMed

Lasek-Nesselquist, Erica; Welch, David Mark; Sogin, Mitchell L

2010-08-01

Giardia duodenalis is an intestinal parasite of many vertebrates. The presence of G. duodenalis in the marine environment due to anthropogenic and wildlife activity is well documented, including the contributions from untreated sewage and storm water, agricultural run-off and droppings from terrestrial animals. Recently, studies have detected this protistan parasite in the faeces of marine vertebrates such as whales, dolphins, seals and shore birds. To explore the population biology of G. duodenalis in marine life, we determined the prevalence of G. duodenalis in two species of seal (Halichoerus grypus, Phoca vitulina vitulina and Phoca vitulina richardsi) from the east and west coasts of the USA, sequenced two loci from G. duodenalis-positive samples to assess molecular diversity and examined G. duodenalis distribution amongst these seals and other marine vertebrates along the east coast. We found a significant difference in the presence of G. duodenalis between east and west coast seal species. Only the zoonotic lineages of G. duodenalis, Assemblages A and B and a novel lineage, which we designated as Assemblage H, were identified in marine vertebrates. Assemblages A and B are broadly distributed geographically and show a lack of host specificity. Only grey seal (Halichoerus grypus) samples and one gull sample (Larus argentatus) from a northern location of Cape Cod, Massachusetts, USA, showed the presence of Assemblage H haplotypes; only one other study of harbour seals from the Puget Sound region of Washington, USA previously recorded the presence of an Assemblage H haplotype. Assemblage H sequences form a monophyletic clade that appears as divergent from the other seven Assemblages of G. duodenalis as these assemblages are from each other. The discovery of a previously uncharacterised lineage of G. duodenalis suggests that this parasite has more genetic diversity and perhaps a larger host range than previously believed. Copyright 2010 Australian Society for Parasitology Inc. Published by Elsevier Ltd. All rights reserved.

Mammals of Australia's Tropical Savannas: A Conceptual Model of Assemblage Structure and Regulatory Factors in the Kimberley Region

PubMed Central

Radford, Ian J.; Dickman, Christopher R.; Start, Antony N.; Palmer, Carol; Carnes, Karin; Everitt, Corrin; Fairman, Richard; Graham, Gordon; Partridge, Thalie; Thomson, Allan

2014-01-01

We construct a state-and-transition model for mammals in tropical savannas in northern Australia to synthesize ecological knowledge and understand mammalian declines. We aimed to validate the existence of alternative mammal assemblage states similar to those in arid Australian grasslands, and to speculate on transition triggers. Based on the arid grassland model, we hypothesized that assemblages are partitioned across rainfall gradients and between substrates. We also predicted that assemblages typical of arid regions in boom periods would be prevalent in savannas with higher and more regular rainfall. Data from eight mammal surveys from the Kimberley region, Western Australia (1994 to 2011) were collated. Survey sites were partitioned across rainfall zones and habitats. Data allowed us to identify three assemblage states: State 0:- low numbers of mammals, State II:- dominated by omnivorous rodents and State III:- dominated by rodents and larger marsupials. Unlike arid grasslands, assemblage dominance by insectivorous dasyurids (State I) did not occur in savannas. Mammal assemblages were partitioned across rainfall zones and between substrates as predicted, but—unlike arid regions—were not related strongly to yearly rainfall. Mammal assemblage composition showed high regional stability, probably related to high annual rainfall and predictable wet season resource pulses. As a consequence, we speculate that perpetually booming assemblages in savannas allow top-down control of the ecosystem, with suppression of introduced cats by the dingo, the region's top predator. Under conditions of low or erratic productivity, imposed increasingly by intense fire regimes and introduced herbivore grazing, dingoes may not limit impacts of cats on native mammals. These interacting factors may explain contemporary declines of savanna mammals as well as historical declines in arid Australia. The cat-ecosystem productivity hypothesis raised here differs from the already-articulated cat-habitat structure hypothesis for mammal declines, and we suggest approaches for explicit testing of transition triggers for competing hypotheses. PMID:24670997

Mammals of Australia's tropical savannas: a conceptual model of assemblage structure and regulatory factors in the Kimberley region.

PubMed

Radford, Ian J; Dickman, Christopher R; Start, Antony N; Palmer, Carol; Carnes, Karin; Everitt, Corrin; Fairman, Richard; Graham, Gordon; Partridge, Thalie; Thomson, Allan

2014-01-01

We construct a state-and-transition model for mammals in tropical savannas in northern Australia to synthesize ecological knowledge and understand mammalian declines. We aimed to validate the existence of alternative mammal assemblage states similar to those in arid Australian grasslands, and to speculate on transition triggers. Based on the arid grassland model, we hypothesized that assemblages are partitioned across rainfall gradients and between substrates. We also predicted that assemblages typical of arid regions in boom periods would be prevalent in savannas with higher and more regular rainfall. Data from eight mammal surveys from the Kimberley region, Western Australia (1994 to 2011) were collated. Survey sites were partitioned across rainfall zones and habitats. Data allowed us to identify three assemblage states: State 0:--low numbers of mammals, State II:--dominated by omnivorous rodents and State III:--dominated by rodents and larger marsupials. Unlike arid grasslands, assemblage dominance by insectivorous dasyurids (State I) did not occur in savannas. Mammal assemblages were partitioned across rainfall zones and between substrates as predicted, but-unlike arid regions-were not related strongly to yearly rainfall. Mammal assemblage composition showed high regional stability, probably related to high annual rainfall and predictable wet season resource pulses. As a consequence, we speculate that perpetually booming assemblages in savannas allow top-down control of the ecosystem, with suppression of introduced cats by the dingo, the region's top predator. Under conditions of low or erratic productivity, imposed increasingly by intense fire regimes and introduced herbivore grazing, dingoes may not limit impacts of cats on native mammals. These interacting factors may explain contemporary declines of savanna mammals as well as historical declines in arid Australia. The cat-ecosystem productivity hypothesis raised here differs from the already-articulated cat-habitat structure hypothesis for mammal declines, and we suggest approaches for explicit testing of transition triggers for competing hypotheses.

Spatio-Temporal Dynamics of Exploited Groundfish Species Assemblages Faced to Environmental and Fishing Forcings: Insights from the Mauritanian Exclusive Economic Zone

PubMed Central

Kidé, Saïkou Oumar; Manté, Claude; Dubroca, Laurent; Demarcq, Hervé; Mérigot, Bastien

2015-01-01

Environmental changes and human activities can have strong impacts on biodiversity and ecosystem functioning. This study investigates how, from a quantitative point of view, simultaneously both environmental and anthropogenic factors affect species composition and abundance of exploited groundfish assemblages (i.e. target and non-target species) at large spatio-temporal scales. We aim to investigate (1) the spatial and annual stability of groundfish assemblages, (2) relationships between these assemblages and structuring factors in order to better explain the dynamic of the assemblages’ structure. The Mauritanian Exclusive Economic Zone (MEEZ) is of particular interest as it embeds a productive ecosystem due to upwelling, producing abundant and diverse resources which constitute an attractive socio-economic development. We applied the multi-variate and multi-table STATICO method on a data set consisting of 854 hauls collected during 14-years (1997–2010) from scientific trawl surveys (species abundance), logbooks of industrial fishery (fishing effort), sea surface temperature and chlorophyll a concentration as environmental variables. Our results showed that abiotic factors drove four main persistent fish assemblages. Overall, chlorophyll a concentration and sea surface temperature mainly influenced the structure of assemblages of coastal soft bottoms and those of the offshore near rocky bottoms where upwellings held. While highest levels of fishing effort were located in the northern permanent upwelling zone, effects of this variable on species composition and abundances of assemblages were relatively low, even if not negligible in some years and areas. The temporal trajectories between environmental and fishing conditions and assemblages did not match for all the entire time series analyzed in the MEEZ, but interestingly for some specific years and areas. The quantitative approach used in this work may provide to stakeholders, scientists and fishers a useful assessment for the spatio-temporal dynamics of exploited assemblages under stable or changing conditions in fishing and environment. PMID:26505198

Light-Dependant Biostabilisation of Sediments by Stromatolite Assemblages

PubMed Central

Paterson, David M.; Aspden, Rebecca J.; Visscher, Pieter T.; Consalvey, Mireille; Andres, Miriam S.; Decho, Alan W.; Stolz, John; Reid, R. Pamela

2008-01-01

For the first time we have investigated the natural ecosystem engineering capacity of stromatolitic microbial assemblages. Stromatolites are laminated sedimentary structures formed by microbial activity and are considered to have dominated the shallows of the Precambrian oceans. Their fossilised remains are the most ancient unambiguous record of early life on earth. Stromatolites can therefore be considered as the first recognisable ecosystems on the planet. However, while many discussions have taken place over their structure and form, we have very little information on their functional ecology and how such assemblages persisted despite strong eternal forcing from wind and waves. The capture and binding of sediment is clearly a critical feature for the formation and persistence of stromatolite assemblages. Here, we investigated the ecosystem engineering capacity of stromatolitic microbial assemblages with respect to their ability to stabilise sediment using material from one of the few remaining living stromatolite systems (Highborne Cay, Bahamas). It was shown that the most effective assemblages could produce a rapid (12–24 h) and significant increase in sediment stability that continued in a linear fashion over the period of the experimentation (228 h). Importantly, it was also found that light was required for the assemblages to produce this stabilisation effect and that removal of assemblage into darkness could lead to a partial reversal of the stabilisation. This was attributed to the breakdown of extracellular polymeric substances under anaerobic conditions. These data were supported by microelectrode profiling of oxygen and calcium. The structure of the assemblages as they formed was visualised by low-temperature scanning electron microscopy and confocal laser microscopy. These results have implications for the understanding of early stromatolite development and highlight the potential importance of the evolution of photosynthesis in the mat forming process. The evolution of photosynthesis may have provided an important advance for the niche construction activity of microbial systems and the formation and persistence of the stromatolites which came to dominate shallow coastal environments for 80% of the biotic history of the earth. PMID:18781202

Light-dependant biostabilisation of sediments by stromatolite assemblages.

PubMed

Paterson, David M; Aspden, Rebecca J; Visscher, Pieter T; Consalvey, Mireille; Andres, Miriam S; Decho, Alan W; Stolz, John; Reid, R Pamela

2008-09-10

For the first time we have investigated the natural ecosystem engineering capacity of stromatolitic microbial assemblages. Stromatolites are laminated sedimentary structures formed by microbial activity and are considered to have dominated the shallows of the Precambrian oceans. Their fossilised remains are the most ancient unambiguous record of early life on earth. Stromatolites can therefore be considered as the first recognisable ecosystems on the planet. However, while many discussions have taken place over their structure and form, we have very little information on their functional ecology and how such assemblages persisted despite strong eternal forcing from wind and waves. The capture and binding of sediment is clearly a critical feature for the formation and persistence of stromatolite assemblages. Here, we investigated the ecosystem engineering capacity of stromatolitic microbial assemblages with respect to their ability to stabilise sediment using material from one of the few remaining living stromatolite systems (Highborne Cay, Bahamas). It was shown that the most effective assemblages could produce a rapid (12-24 h) and significant increase in sediment stability that continued in a linear fashion over the period of the experimentation (228 h). Importantly, it was also found that light was required for the assemblages to produce this stabilisation effect and that removal of assemblage into darkness could lead to a partial reversal of the stabilisation. This was attributed to the breakdown of extracellular polymeric substances under anaerobic conditions. These data were supported by microelectrode profiling of oxygen and calcium. The structure of the assemblages as they formed was visualised by low-temperature scanning electron microscopy and confocal laser microscopy. These results have implications for the understanding of early stromatolite development and highlight the potential importance of the evolution of photosynthesis in the mat forming process. The evolution of photosynthesis may have provided an important advance for the niche construction activity of microbial systems and the formation and persistence of the stromatolites which came to dominate shallow coastal environments for 80% of the biotic history of the earth.

Multi-locus analysis of Giardia duodenalis from nonhuman primates kept in zoos in China: geographical segregation and host-adaptation of assemblage B isolates.

PubMed

Karim, Md Robiul; Wang, Rongjun; Yu, Fuchang; Li, Tongyi; Dong, Haiju; Li, Dezhong; Zhang, Longxian; Li, Junqiang; Jian, Fuchun; Zhang, Sumei; Rume, Farzana Islam; Ning, Changshen; Xiao, Lihua

2015-03-01

Only a few studies based on single locus characterization have been conducted on the molecular epidemiology of Giardia duodenalis in nonhuman primates (NHPs). The present study was conducted to examine the occurrence and genotype identity of G. duodenalis in NHPs based on multi-locus analysis of the small-subunit ribosomal RNA (SSU rRNA), triose phosphate isomerase (tpi), glutamate dehydrogenase (gdh), and beta-giardin (bg) genes. Fecal specimens were collected from 496 animals of 36 NHP species kept in seven zoos in China and screened for G. duodenalis by tpi-based PCR. G. duodenalis was detected in 92 (18.6%) specimens from 18 NHP species, belonging to assemblage A (n=4) and B (n=88). In positive NHP species, the infection rates ranged from 4.8% to 100%. In tpi sequence analysis, the assemblage A included subtypes A1, A2 and one novel subtype. Multi-locus analysis of the tpi, gdh, and bg genes detected 11 (8 known and 3 new), 6 (3 known and 3 new) and 9 (2 known and 7 new) subtypes in 88, 47 and 35 isolates in assemblage B, respectively. Thirty-two assemblage B isolates with data at all three loci yielded 15 multi-locus genotypes (MLGs), including 2 known and 13 new MLGs. Phylogenetic analysis of concatenated sequences of assemblage B showed that MLGs found here were genetically different from those of humans, NHPs, rabbit and guinea pig in Italy and Sweden. It further indicated that assemblage B isolates in ring-tailed lemurs and squirrel monkeys might be genetically different from those in other NHPs. These data suggest that NHPs are mainly infected with G. duodenalis assemblage B and there might be geographical segregation and host-adaptation in assemblage B in NHPs. Copyright © 2014 Elsevier B.V. All rights reserved.

The relative importance of regional, local, and evolutionary factors structuring cryptobenthic coral-reef assemblages

NASA Astrophysics Data System (ADS)

Ahmadia, Gabby N.; Tornabene, Luke; Smith, David J.; Pezold, Frank L.

2018-03-01

Factors shaping coral-reef fish species assemblages can operate over a wide range of spatial scales (local versus regional) and across both proximate and evolutionary time. Niche theory and neutral theory provide frameworks for testing assumptions and generating insights about the importance of local versus regional processes. Niche theory postulates that species assemblages are an outcome of evolutionary processes at regional scales followed by local-scale interactions, whereas neutral theory presumes that species assemblages are formed by largely random processes drawing from regional species pools. Indo-Pacific cryptobenthic coral-reef fishes are highly evolved, ecologically diverse, temporally responsive, and situated on a natural longitudinal diversity gradient, making them an ideal group for testing predictions from niche and neutral theories and effects of regional and local processes on species assemblages. Using a combination of ecological metrics (fish density, diversity, assemblage composition) and evolutionary analyses (testing for phylogenetic niche conservatism), we demonstrate that the structure of cryptobenthic fish assemblages can be explained by a mixture of regional factors, such as the size of regional species pools and broad-scale barriers to gene flow/drivers of speciation, coupled with local-scale factors, such as the relative abundance of specific microhabitat types. Furthermore, species of cryptobenthic fishes have distinct microhabitat associations that drive significant differences in assemblage community structure between microhabitat types, and these distinct microhabitat associations are phylogenetically conserved over evolutionary timescales. The implied differential fitness of cryptobenthic fishes across varied microhabitats and the conserved nature of their ecology are consistent with predictions from niche theory. Neutral theory predictions may still hold true for early life-history stages, where stochastic factors may be more important in explaining recruitment. Overall, through integration of ecological and evolutionary techniques, and using multiple spatial scales, our study offers a unique perspective on factors determining coral-reef fish assemblages.

Long-Term Recovery of Life in the Chicxulub Crater

NASA Astrophysics Data System (ADS)

Lowery, C.; Jones, H.; Bralower, T. J.; Smit, J.; Rodriguez-Tovar, F. J.; Whalen, M. T.; Owens, J. D.; Expedition 364 Science Party, I. I.

2017-12-01

The Chicxulub Crater on the Yucatán Peninsula of Mexico was formed by the impact of an asteroid 66 Ma that caused the extinction of 75% of genera on Earth. Immediately following the impact, the decimated ecosystem began the long process of recovery, both in terms of primary productivity and species diversity. This well-documented process was heterogeneous across the world ocean, but until the present time it has been inaccessible at ground zero of the impact. IODP/ICDP Exp. 364 recovered 9.5 m of pelagic limestone spanning the entire Paleocene, including a continuous section spanning the first 5 myr following the impact. The Chicxulub Crater is the largest known marine impact crater on Earth, and the recovery of the ecosystem presented here is the first such record of long-term primary succession in the sterile zone of a large impact crater. Planktic and benthic foraminifera, calcareous nannoplankton, calcispheres, bioturbation, and geochemical proxies all indicate that export productivity in the Chicxulub Crater recovered rapidly (within 30 kyr) following the impact. Recovery in terms of diversity and species abundance took much longer, and varied between groups. Planktic foraminifera quickly diversified, with all common Paleocene tropical/subtropical species appearing roughly when expected. Trace fossils appear rapidly after the event, with a progressive recovery through the lowermost Paleocene. Calcareous nannoplankton took much longer to recover, and disaster taxa like Braarudosphaera dominated the assemblage well into the late Paleocene. Paleoecology and geochemistry relate these trends to oceanographic conditions within the Chicxulub Crater. Planktic foraminifera from known depth habitats, including Morozovellids, Acarininids, Chiloguembelinids, and Subbotinids, track changes in the water column structure and paleoredox conditions within the crater. Diverse and abundant macro- and microbenthic organisms indicate food availability and good oxygen conditions on the seafloor. The latest Paleocene, just prior to the onset of the PETM, is characterized by a typical and diverse assemblage of foraminifera and calcareous nannoplankton; a normal open-marine assemblage with no trace of long-term negative effects from the impact.

Linking invasive exotic vertebrates and their ecosystem impacts in Tierra del Fuego to test theory and determine action

NASA Astrophysics Data System (ADS)

Valenzuela, Alejandro E. J.; Anderson, Christopher B.; Fasola, Laura; Cabello, José L.

2014-01-01

Understanding processes and impacts of biological invasions is fundamental for ecology and management. Recent reviews summarized the mechanisms by which invasive species alter entire ecosystems, but quantitative assessments of these mechanisms are lacking for actual assemblages to determine their relative importance, frequency and patterns. We updated information on introduced vertebrates in the Tierra del Fuego Archipelago (TDF) via an exhaustive literature review and new data to evaluate ecosystem impact mechanisms and provide management recommendations. To date, 24 exotic vertebrates have naturalized in TDF, outnumbering natives nearly 2:1, with the North American beaver (Castor canadensis) and muskrat (Ondatra zibethica) being the most widely distributed species and also impacting the ecosystem through the greatest number of mechanisms. Introduced vertebrates occupied most parts of the archipelago with human-inhabited islands having greater taxa richness. All exotics potentially altered ecosystems by one or more mechanisms: 100% food webs, 92% invasional meltdown, 42% habitat modification, 38% disease or parasite transmission, 21% soil property and disturbance regime changes. Impact to habitat structure was the main clustering criterion for this assemblage. Within the species that physically alter habitats, we found two sub-groups: 1) large herbivores and 2) "others" including beavers and muskrats. Species that did not alter habitat were divided further into those with predatory trophic effects (carnivorous mammals and trout, sub-group 4) and the rest with assorted impacts (sub-group 3). By establishing high quality information on archipelago-wide assemblage, distribution, impacts and mechanisms for exotic vertebrates, we recommend, based on ecological criteria, prioritizing the management of sub-group 2. A secondary priority might be given to the carnivores in sub-group 4, while species in sub-groups 1 and 3 are less urgent. As the first systematic survey of introduced fauna on an archipelago-scale, we identified knowledge gaps, such as population abundance and dynamics for specific species, which are needed to orient future work, but the notable progress made to date is highlighted.

Strong Depth-Related Zonation of Megabenthos on a Rocky Continental Margin (∼700–4000 m) off Southern Tasmania, Australia

PubMed Central

Thresher, Ronald; Althaus, Franziska; Adkins, Jess; Gowlett-Holmes, Karen; Alderslade, Phil; Dowdney, Jo; Cho, Walter; Gagnon, Alex; Staples, David; McEnnulty, Felicity; Williams, Alan

2014-01-01

Assemblages of megabenthos are structured in seven depth-related zones between ∼700 and 4000 m on the rocky and topographically complex continental margin south of Tasmania, southeastern Australia. These patterns emerge from analysis of imagery and specimen collections taken from a suite of surveys using photographic and in situ sampling by epibenthic sleds, towed video cameras, an autonomous underwater vehicle and a remotely operated vehicle (ROV). Seamount peaks in shallow zones had relatively low biomass and low diversity assemblages, which may be in part natural and in part due to effects of bottom trawl fishing. Species richness was highest at intermediate depths (1000–1300 m) as a result of an extensive coral reef community based on the bioherm-forming scleractinian Solenosmilia variabilis. However, megabenthos abundance peaked in a deeper, low diversity assemblage at 2000–2500 m. The S. variabilis reef and the deep biomass zone were separated by an extensive dead, sub-fossil S. variabilis reef and a relatively low biomass stratum on volcanic rock roughly coincident with the oxygen minimum layer. Below 2400 m, megabenthos was increasingly sparse, though punctuated by occasional small pockets of relatively high diversity and biomass. Nonetheless, megabenthic organisms were observed in the vast majority of photographs on all seabed habitats and to the maximum depths observed - a sandy plain below 3950 m. Taxonomic studies in progress suggest that the observed depth zonation is based in part on changing species mixes with depth, but also an underlying commonality to much of the seamount and rocky substrate biota across all depths. Although the mechanisms supporting the extraordinarily high biomass in 2000–2500 m depths remains obscure, plausible explanations include equatorwards lateral transport of polar production and/or a response to depth-stratified oxygen availability. PMID:24465758

Integrating metabolic performance, thermal tolerance, and plasticity enables for more accurate predictions on species vulnerability to acute and chronic effects of global warming.

PubMed

Magozzi, Sarah; Calosi, Piero

2015-01-01

Predicting species vulnerability to global warming requires a comprehensive, mechanistic understanding of sublethal and lethal thermal tolerances. To date, however, most studies investigating species physiological responses to increasing temperature have focused on the underlying physiological traits of either acute or chronic tolerance in isolation. Here we propose an integrative, synthetic approach including the investigation of multiple physiological traits (metabolic performance and thermal tolerance), and their plasticity, to provide more accurate and balanced predictions on species and assemblage vulnerability to both acute and chronic effects of global warming. We applied this approach to more accurately elucidate relative species vulnerability to warming within an assemblage of six caridean prawns occurring in the same geographic, hence macroclimatic, region, but living in different thermal habitats. Prawns were exposed to four incubation temperatures (10, 15, 20 and 25 °C) for 7 days, their metabolic rates and upper thermal limits were measured, and plasticity was calculated according to the concept of Reaction Norms, as well as Q10 for metabolism. Compared to species occupying narrower/more stable thermal niches, species inhabiting broader/more variable thermal environments (including the invasive Palaemon macrodactylus) are likely to be less vulnerable to extreme acute thermal events as a result of their higher upper thermal limits. Nevertheless, they may be at greater risk from chronic exposure to warming due to the greater metabolic costs they incur. Indeed, a trade-off between acute and chronic tolerance was apparent in the assemblage investigated. However, the invasive species P. macrodactylus represents an exception to this pattern, showing elevated thermal limits and plasticity of these limits, as well as a high metabolic control. In general, integrating multiple proxies for species physiological acute and chronic responses to increasing temperature helps providing more accurate predictions on species vulnerability to warming. © 2014 John Wiley & Sons Ltd.

A global database of ant species abundances

USGS Publications Warehouse

Gibb, Heloise; Dunn, Rob R.; Sanders, Nathan J.; Grossman, Blair F.; Photakis, Manoli; Abril, Silvia; Agosti, Donat; Andersen, Alan N.; Angulo, Elena; Armbrecht, Ingre; Arnan, Xavier; Baccaro, Fabricio B.; Bishop, Tom R.; Boulay, Raphael; Bruhl, Carsten; Castracani, Cristina; Cerda, Xim; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A.; Ellison, Aaron M.; Enriquez, Martha L.; Fayle, Tom M.; Feener Jr., Donald H.; Fisher, Brian L.; Fisher, Robert N.; Fitpatrick, Matthew C.; Gomez, Cristanto; Gotelli, Nicholas J.; Gove, Aaron; Grasso, Donato A.; Groc, Sarah; Guenard, Benoit; Gunawardene, Nihara; Heterick, Brian; Hoffmann, Benjamin; Janda, Milan; Jenkins, Clinton; Kaspari, Michael; Klimes, Petr; Lach, Lori; Laeger, Thomas; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Luke, Sarah H.; Majer, Jonathan; McGlynn, Terrence P.; Menke, Sean; Mezger, Dirk; Mori, Alessandra; Moses, Jimmy; Munyai, Thinandavha Caswell; Pacheco, Renata; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M.; Resasco, Julian; Retana, Javier; Silva, Rogerio R.; Sorger, Magdalena D.; Souza, Jorge; Suarez, Andrew V.; Tista, Melanie; Vasconcelos, Heraldo L.; Vonshak, Merav; Weiser, Michael D.; Yates, Michelle; Parr, Catherine L.

2017-01-01

What forces structure ecological assemblages? A key limitation to general insights about assemblage structure is the availability of data that are collected at a small spatial grain (local assemblages) and a large spatial extent (global coverage). Here, we present published and unpublished data from 51,388 ant abundance and occurrence records of more than 2693 species and 7953 morphospecies from local assemblages collected at 4212 locations around the world. Ants were selected because they are diverse and abundant globally, comprise a large fraction of animal biomass in most terrestrial communities, and are key contributors to a range of ecosystem functions. Data were collected between 1949 and 2014, and include, for each geo-referenced sampling site, both the identity of the ants collected and details of sampling design, habitat type and degree of disturbance. The aim of compiling this dataset was to provide comprehensive species abundance data in order to test relationships between assemblage structure and environmental and biogeographic factors. Data were collected using a variety of standardised methods, such as pitfall and Winkler traps, and will be valuable for studies investigating large-scale forces structuring local assemblages. Understanding such relationships is particularly critical under current rates of global change. We encourage authors holding additional data on systematically collected ant assemblages, especially those in dry and cold, and remote areas, to contact us and contribute their data to this growing dataset.

Shelf gradients of echinoid assemblages from the Miocene of Sardinia

NASA Astrophysics Data System (ADS)

Nebelsick, James; Andrea, Mancosu

2017-04-01

Well exposed Miocene echinoid assemblages from Sardinia representing various environmental settings including both siliciclastics and carbonates have been studied with respect to reconstructing palaeoenvironmental conditions along a shelf gradient. The basis of this study includes 1) detailed logging of sedimentary facies in the field, 2) interpreting their behavior and life habits of the preserved echinoids by applying functional morphological reconstructions of the echinoid skeletons and comparing them to related Recent echinoid taxa, 3) quantifying taphonomic features of test preservation including predation, abrasion, fragmentation, encrustation and bioerosion, and finally 4) analyzing accompanying fauna and flora as well as trace fossils. The assemblages included clypeasteroid dominated assemblages in shallow water settings where often mass accumulations of sand dollars are present. Spatangoid dominated assemblages are found in more offshore settings where diversity is determined by varying burrowing depths, feeding strategies and resource partitioning accompanied by varying rates of bioturbation and episodes of sediment deposition by storms. Mixed assemblages also occur ranging from shallow to deeper water with varying substrates including sea grass, as well as coarser and finer sediments. Finally, deeper water monotypic assemblages are present in storm-dominated siliciclastic shelf environments including both regular and irregular echinoids. In general, echinoid presence is determined by the ecological preferences of the taxa involved, their propensities for gregarious behavior, the differential preservation potentials of the varied skeletal architectures present as well as sedimentary environment in which they occur.

Comparative analysis of different survey methods for monitoring fish assemblages in coastal habitats.

PubMed

Baker, Duncan G L; Eddy, Tyler D; McIver, Reba; Schmidt, Allison L; Thériault, Marie-Hélène; Boudreau, Monica; Courtenay, Simon C; Lotze, Heike K

2016-01-01

Coastal ecosystems are among the most productive yet increasingly threatened marine ecosystems worldwide. Particularly vegetated habitats, such as eelgrass (Zostera marina) beds, play important roles in providing key spawning, nursery and foraging habitats for a wide range of fauna. To properly assess changes in coastal ecosystems and manage these critical habitats, it is essential to develop sound monitoring programs for foundation species and associated assemblages. Several survey methods exist, thus understanding how different methods perform is important for survey selection. We compared two common methods for surveying macrofaunal assemblages: beach seine netting and underwater visual census (UVC). We also tested whether assemblages in shallow nearshore habitats commonly sampled by beach seines are similar to those of nearby eelgrass beds often sampled by UVC. Among five estuaries along the Southern Gulf of St. Lawrence, Canada, our results suggest that the two survey methods yield comparable results for species richness, diversity and evenness, yet beach seines yield significantly higher abundance and different species composition. However, sampling nearshore assemblages does not represent those in eelgrass beds despite considerable overlap and close proximity. These results have important implications for how and where macrofaunal assemblages are monitored in coastal ecosystems. Ideally, multiple survey methods and locations should be combined to complement each other in assessing the entire assemblage and full range of changes in coastal ecosystems, thereby better informing coastal zone management.

Patterns of Spatial Variation of Assemblages Associated with Intertidal Rocky Shores: A Global Perspective

PubMed Central

Cruz-Motta, Juan José; Miloslavich, Patricia; Palomo, Gabriela; Iken, Katrin; Konar, Brenda; Pohle, Gerhard; Trott, Tom; Benedetti-Cecchi, Lisandro; Herrera, César; Hernández, Alejandra; Sardi, Adriana; Bueno, Andrea; Castillo, Julio; Klein, Eduardo; Guerra-Castro, Edlin; Gobin, Judith; Gómez, Diana Isabel; Riosmena-Rodríguez, Rafael; Mead, Angela; Bigatti, Gregorio; Knowlton, Ann; Shirayama, Yoshihisa

2010-01-01

Assemblages associated with intertidal rocky shores were examined for large scale distribution patterns with specific emphasis on identifying latitudinal trends of species richness and taxonomic distinctiveness. Seventy-two sites distributed around the globe were evaluated following the standardized sampling protocol of the Census of Marine Life NaGISA project (www.nagisa.coml.org). There were no clear patterns of standardized estimators of species richness along latitudinal gradients or among Large Marine Ecosystems (LMEs); however, a strong latitudinal gradient in taxonomic composition (i.e., proportion of different taxonomic groups in a given sample) was observed. Environmental variables related to natural influences were strongly related to the distribution patterns of the assemblages on the LME scale, particularly photoperiod, sea surface temperature (SST) and rainfall. In contrast, no environmental variables directly associated with human influences (with the exception of the inorganic pollution index) were related to assemblage patterns among LMEs. Correlations of the natural assemblages with either latitudinal gradients or environmental variables were equally strong suggesting that neither neutral models nor models based solely on environmental variables sufficiently explain spatial variation of these assemblages at a global scale. Despite the data shortcomings in this study (e.g., unbalanced sample distribution), we show the importance of generating biological global databases for the use in large-scale diversity comparisons of rocky intertidal assemblages to stimulate continued sampling and analyses. PMID:21179546

Macroecological analysis of the fish fauna inhabiting Cymodocea nodosa seagrass meadows.

PubMed

Espino, F; Brito, A; Haroun, R; Tuya, F

2015-10-01

In this study, patterns in the taxonomic richness and composition of the fish fauna inhabiting Cymodocea nodosa seagrass meadows were described across their entire distribution range in the Mediterranean Sea and adjacent Atlantic Ocean. Specifically, the study tested whether there are differences in the composition of fish assemblages between those ecoregions encompassed by the distribution range of C. nodosa, and whether these differences in composition are connected with differences in bioclimatic affinities of the fish faunas. A literature review resulted in a total of 19 studies, containing 22 fish assemblages at 18 locations. The ichthyofauna associated with C. nodosa seagrass meadows comprises 59 families and 188 species. The western Mediterranean (WM) Sea has the highest species richness (87 species). Fish assemblages from the Macaronesia-Canary Islands, the Sahelian Upwelling, South European Atlantic Shelf and the WM differ, in terms of assemblage composition, relative to other ecoregions. In contrast, the composition of the fish fauna from the central and eastern Mediterranean overlaps. There is a significant serial correlation in fish assemblage composition between adjacent ecoregions along the distribution range of C. nodosa. Dissimilarities in assemblage composition are connected with the geographical separation between locations, and the mean minimum annual seawater temperature is the environmental factor that explains most variation in fish assemblage composition. © 2015 The Fisheries Society of the British Isles.

Environmental stressors as a driver of the trait composition of benthic macroinvertebrate assemblages in polluted Iberian rivers.

PubMed

Kuzmanovic, Maja; Dolédec, Sylvain; de Castro-Catala, Nuria; Ginebreda, Antoni; Sabater, Sergi; Muñoz, Isabel; Barceló, Damià

2017-07-01

We used the trait composition of macroinvertebrate communities to identify the effects of pesticides and multiple stressors associated with urban land use at different sites of four rivers in Spain. Several physical and chemical stressors (high metal pollution, nutrients, elevated temperature and flow alterations) affected the urban sites. The occurrence of multiple stressors influenced aquatic assemblages at 50% of the sites. We hypothesized that the trait composition of macroinvertebrate assemblages would reflect the strategies that the assemblages used to cope with the respective environmental stressors. We used RLQ and fourth corner analysis to address the relationship between stressors and the trait composition of benthic macroinvertebrates. We found a statistically significant relationship between the trait composition and the exposure of assemblages to environmental stressors. The first RLQ dimension, which explained most of the variability, clearly separated sites according to the stressors. Urban-related stressors selected taxa that were mainly plurivoltine and fed on deposits. In contrast, pesticide impacted sites selected taxa with high levels of egg protection (better egg survival), indicating a potentially higher risk for egg mortality. Moreover, the trait diversity of assemblages at urban sites was low compared to that observed in pesticide impacted sites, suggesting the homogenization of assemblages in urban areas. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Simple processes drive unpredictable differences in estuarine fish assemblages: Baselines for understanding site-specific ecological and anthropogenic impacts

NASA Astrophysics Data System (ADS)

Sheaves, Marcus

2016-03-01

Predicting patterns of abundance and composition of biotic assemblages is essential to our understanding of key ecological processes, and our ability to monitor, evaluate and manage assemblages and ecosystems. Fish assemblages often vary from estuary to estuary in apparently unpredictable ways, making it challenging to develop a general understanding of the processes that determine assemblage composition. This makes it problematic to transfer understanding from one estuary situation to another and therefore difficult to assemble effective management plans or to assess the impacts of natural and anthropogenic disturbance. Although system-to-system variability is a common property of ecological systems, rather than being random it is the product of complex interactions of multiple causes and effects at a variety of spatial and temporal scales. I investigate the drivers of differences in estuary fish assemblages, to develop a simple model explaining the diversity and complexity of observed estuary-to-estuary differences, and explore its implications for management and conservation. The model attributes apparently unpredictable differences in fish assemblage composition from estuary to estuary to the interaction of species-specific, life history-specific and scale-specific processes. In explaining innate faunal differences among estuaries without the need to invoke complex ecological or anthropogenic drivers, the model provides a baseline against which the effects of additional natural and anthropogenic factors can be evaluated.

Are mesophotic coral ecosystems distinct communities and can they serve as refugia for shallow reefs?

NASA Astrophysics Data System (ADS)

Semmler, Robert F.; Hoot, Whitney C.; Reaka, Marjorie L.

2017-06-01

We analyzed an extensive dataset of over 9000 benthic and suprabenthic species found throughout the Gulf of Mexico (GoMx) to assess whether mesophotic coral ecosystems represent distinct assemblages and evaluate their potential to serve as refugia for shallow reef communities. We assessed community structure of the overall benthic community from 0 to 300 m via non-metric multidimensional scaling (NMDS) of species presence across depth bands. We used the Jaccard index of similarity to calculate the proportion of shared species between adjacent depth bands, measure species turnover with depth, and assess taxonomic overlap between shallow reefs versus progressively deeper depth bands. NMDS ordinations showed that the traditionally defined mesophotic range (30-150 m) as a whole is not a distinct community. In contrast, taxonomically distinct communities, determined by hierarchical clustering, were found at 0-70, 60-120, 110-200, and 190-300 m. Clustering highlighted an important separation in the benthic community at 60 m, which was especially important for actinopterygian fishes. Species turnover between adjacent depths decreased with depth for all taxa combined and individual taxa, with peaks at 60, 90-120, and 190-200 m. Fishes showed lower turnover from shallow to upper mesophotic depths (0-50 m) than all taxa combined, a substantial peak at 60 m, followed by a precipitous and continued decline in turnover thereafter. Taxonomic overlap between shallow (0-20 m) and progressively deeper zones declined steadily with depth in all taxa and individual taxa, suggesting that mid- and lower mesophotic habitats have less (but not inconsequential) potential to serve as refugia (60-150 m, 15-25% overlap with shallow habitats) than upper mesophotic zones (30-60 m, 30-45% overlap with shallow habitats) for all taxa combined. We conclude that the traditional mesophotic zone is home to three ecological communities in the GoMx, one that is confluent with shallow reefs, a distinct mesophotic assemblage spanning 60-120 m, and a third that extends onto the outer continental shelf.

The mid- to late-Holocene environmental evolution at the marsh of Vravron (Attiki, SE Greece): a multidisciplinary approach

NASA Astrophysics Data System (ADS)

Triantaphyllou, M. V.; Kouli, K.; Tsourou, T.; Koukousioura, O.; Pavlopoulos, K.; Dermitzakis, M. D.

2009-04-01

The Vravron bay, in the vicinity of the homonym archaeological site is a marshy area located on the eastern coast of Attiki peninsula (eastern Greece). Vravron was inhabited already since the Early/ Middle Neolithic, although it's mainly known from the famous Archaic and Classical sanctuary of Vravronia Artemis. A sediment core from the marshy deposits of Vravron was submitted to detailed palynological, micropaleontological and sedimentological analyses, in order to investigate the environmental evolution of the area since approx. 3000 BC (AMS 14C). Benthic foraminifera and ostracoda assemblages were used to trace the depositional environment of the sequence: open shallow marine conditions with constant input of fresh water due to the influx of Erasinos River are recorded until 400BC, confirming the existence of the natural port known from a Mycenaean legend, while repeated flooding events recorded between 400BC and 50 AD should be linked with the destruction of the famous sanctuary of Artemis and the abandonment of the area. Around 50 AD the ongoing progression of Erasinos River resulted in the gradual development of lagoonal environment that after 1300AD got isolated from the sea becoming progressively a fresh water marsh. Pollen assemblages included representatives from all modern phytogeographic zones, indicating the complexity of the plant communities in the area and outlined the vegetation development since the Early Bronze Age. Even if human presence has been continuously recorded, its impact on natural environment appears profound only during the Mycenaean times, when cereal cultivation seems to be the main rural activity and after 1300AD, when a remarkable rise in like ploughing and herding evidence marks the introduction of the Arvanites population in the area. The establishment of the Vravronia Artemis sanctuary during the Geometric times coincides with a turnover in agricultural activities, as cereal cultivation is neglected and olive groves are amplified.

Contrasting fluid/rock interaction between the Notch Peak granitic intrusion and argillites and limestones in western Utah: evidence from stable isotopes and phase assemblages

USGS Publications Warehouse

Nabelek, P.I.; Labotka, T.C.; O'Neil, J.R.; Papike, J.J.

1984-01-01

The Jurassic Notch Peak granitic stock, western Utah, discordantly intrudes Cambrian interbedded pure limestones and calcareous argillites. Contact metamorphosed argillite and limestone samples, collected along traverses away from the intrusion, were analyzed for ??18O, ??13C, and ??D. The ??13C and ??18O values for the limestones remain constant at about 0.5 (PDB) and 20 (SMOW), respectively, with increasing metamorphic grade. The whole rock ??18O values of the argillites systematically decrease from 19 to as low as 8.1, and the ??13C values of the carbonate fraction from 0.5 to -11.8. The change in ??13C values can be explained by Rayleigh decarbonation during calcsilicate reactions, where calculated {Mathematical expression} is about 4.5 permil for the high-grade samples and less for medium and low-grade samples suggesting a range in temperatures at which most decarbonation occurred. However, the amount of CO2 released was not anough to decrease the whole rock ??18O to the values observed in the argillites. The low ??18O values close to the intrusion suggest interaction with magmatic water that had a ??18O value of 8.5. The extreme lowering of ??13C by fractional devolatilization and the lowering of ??18O in argillites close to the intrusion indicates oxgen-equivalent fluid/rock ratios in excess of 1.0 and X(CO2)F of the fluid less than 0.2. Mineral assemblages in conjunction with the isotopic data indicate a strong influence of water infiltration on the reaction relations in the argillites and separate fluid and thermal fronts moving thru the argillites. The different stable isotope relations in limestones and argillites attest to the importance of decarbonation in the enhancement of permeability. The flow of fluids was confined to the argillite beds (argillite aquifers) whereas the limestones prevented vertical fluid flow and convective cooling of the stock. ?? 1984 Springer-Verlag.

Thermophysicochemical Reaction of ZrCo-Hydrogen-Helium System

NASA Astrophysics Data System (ADS)

Jung, Kwangjin; Kang, Hee-Seok; Yun, Sei-Hun; Chung, Hongsuk

2017-11-01

Nuclear fusion energy, which is clean and infinite, has been studied for more than half a century. Efforts are in progress worldwide for the demonstration and validation of nuclear fusion energy. Korea has been developing hydrogen isotope storage and delivery system (SDS) technologies including a basic scientific study on a hydrogen storage medium. An SDS bed, which is a key component of the SDS, is used for storing hydrogen isotopes in a metal hydride form and supplying them to a tokamak. Thermophysicochemical properties of the ZrCo-H2-He system are investigated for the practical utilization of a hydriding alloy system. The hydriding reaction, in which ZrCoHx is composed as ZrCo absorbing hydrogen, is exothermic. The dehydriding reaction, in which ZrCoHx decomposes into ZrCo and hydrogen, is endothermic. The heat generated through the hydriding reaction interrupts the hydriding progress. The heat loss by a dehydriding reaction impedes the dehydriding progress. The tritium decay product, helium-3, covers the ZrCo and keeps the hydrogen from contact with ZrCo in the SDS bed. In this study, we designed and fabricated a ZrCo bed and its performance test rig. The helium blanketing effect on a ZrCo hydrogen reaction with 0 % to 20 % helium content in a gaseous phase and a helium blanket removal method were studied experimentally. In addition, the volumetric flow rates and temperature at the beginning of a ZrCo hydrogen reaction in a hydrogen or helium atmosphere, and the cooling of the SDS bed by radiation only and by both radiation and natural convection related to the reuse cycle, were obtained.

Spatial and temporal patterns in fish assemblages of upper coastal plain streams, Mississippi, USA

Treesearch

Susan B. Adams; Melvin L. Warren; Wendell R. Haag

2004-01-01

We assessed spatial, seasonal, and annual variation in fish assemblages over 17 months in three small- to medium-sized, incised streams characteristic of northwestern Mississippi streams. We sampled 17 962 fish representing 52 species and compared assemblages within and among streams. Although annual and seasonal variability inassemblage structure was high, fish...

Influence of Fish Predation on Assemblage Structure of Macroinvertebrates in an Intermittent Stream

Treesearch

Lance R. Williams; Christopher M. Taylor; Melvin L. Warren

2003-01-01

Despite considerable investigation of stream systems, the influence of fish predation on macroinvertebrate assemblages is still poorly understood and remains a controversial subject. We conducted a field experiment in an intermittent reach of Alum Creek in the Ouachita Mountains, Arkansas, to examine the effects of predatory fish on macroinvertebrate assemblages. We...

Social Equity and the Assemblage of Values in Australian Higher Education

ERIC Educational Resources Information Center

Rizvi, Fazal; Lingard, Bob

2011-01-01

The paper argues that the policy concept of social equity cannot be adequately understood in a generalised abstract manner, but is better viewed as an assemblage that brings together a number of contrasting, and sometimes competing, values. Our use of assemblage is somewhat eclectic and is designed to underscore the performative character of…

Don't Deny These Five Distinct Stages of a School's Demise.

ERIC Educational Resources Information Center

Smith, William D.

1984-01-01

A neighborhood's reaction to the announcement of a school closing involves the five progressive stages Elisabeth Kubler-Ross describes as inevitable for one's reaction to the death of a friend or relative. (DCS)

Preliminary geologic map and digital database of the San Bernardino 30' x 60' quadrangle, California

USGS Publications Warehouse

Morton, Douglas M.; Miller, Fred K.

2003-01-01

The San Bernardino 30'x60' quadrangle, southern California, is diagonally bisected by the San Andreas Fault Zone, separating the San Gabriel and San Bernardino Mountains, major elements of California's east-oriented Transverse Ranges Province. Included in the southern part of the quadrangle is the northern part of the Peninsular Ranges Province and the northeastern part of the oil-producing Los Angeles basin. The northern part of the quadrangle includes the southern part of the Mojave Desert Province. Pre-Quaternary rocks within the San Bernardino quadrangle consist of three extensive, well-defined basement rock assemblages, the San Gabriel Mountains, San Bernardino Mountains, and the Peninsular Ranges assemblages, and a fourth assemblage restricted to a narrow block bounded by the active San Andreas Fault and the Mill Creek Fault. Each of these basement rock assemblages is characterized by a relatively unique suite of rocks that was amalgamated by the end of the Cretaceous and (or) early Cenozoic. Some Tertiary sedimentary and volcanic rocks are unique to specific assemblages, and some overlap adjacent assemblages. A few Miocene and Pliocene units cross the boundaries of adjacent assemblages, but are dominant in only one. Tectonic events directly and indirectly related to the San Andreas Fault system have partly dismembered the basement rocks during the Neogene, forming the modern-day physiographic provinces. Rocks of the four basement rock assemblages are divisible into an older suite of Late Cretaceous and older rocks and a younger suite of post-Late Cretaceous rocks. The age span of the older suite varies considerably from assemblage to assemblage, and the point in time that separates the two suites varies slightly. In the Peninsular Ranges, the older rocks were formed from the Paleozoic to the end of Late Cretaceous plutonism, and in the Transverse Ranges over a longer period of time extending from the Proterozoic to metamorphism at the end of the Cretaceous. Within the Peninsular Ranges a profound diachronous unconformity marks the pre-Late Cretaceous-post-Late Cretaceous subdivision, but within the Transverse Ranges the division appears to be slightly younger, perhaps coinciding with the end of the Cretaceous or extending into the early Cenozoic. Initial docking of Peninsular Ranges rocks with Transverse Ranges rocks appears to have occurred at the terminus of plutonism within the Peninsular Ranges. During the Paleogene there was apparently discontinuous but widespread deposition on the basement rocks and little tectonic disruption of the amalgamated older rocks. Dismemberment of these Paleogene and older rocks by strike-slip, thrust, and reverse faulting began in the Neogene and is ongoing. The Peninsular Ranges basement rock assemblage is made up of the Peninsular Ranges batholith and a variety of metasedimentary rocks. Most of the plutonic rocks of the batholith are granodiorite and tonalite in composition; primary foliation is common, mainly in the eastern part. Tertiary sedimentary rocks of the Los Angeles Basin crop out in the Puente and San Jose Hills along with the spatially associated Glendora Volcanics; both units span the boundary between the Peninsular Ranges and San Gabriel Mountains basement rock assemblages. The San Gabriel Mountains basement rock assemblage includes two discrete areas, the high standing San Gabriel Mountains and the relatively low San Bernardino basin east of the San Jacinto Fault. The basement rock assemblage is characterized by a unique suite of rocks that include anorthosite, Proterozoic and Paleozoic gneiss and schist, the Triassic

Environmental determinants of radiolarian assemblages in the western Pacific since the last deglaciation

NASA Astrophysics Data System (ADS)

Hernández-Almeida, I.; Cortese, G.; Yu, P.-S.; Chen, M.-T.; Kucera, M.

2017-08-01

Radiolarians are a very diverse microzooplanktonic group, often distributed in regionally restricted assemblages and responding to specific environmental factors. These properties of radiolarian assemblages make the group more conducive for the development and application of basin-wide ecological models. Here we use a new surface sediment data set from the western Pacific to demonstrate that ecological patterns derived from basin-wide open-ocean data sets cannot be transferred on semirestricted marginal seas. The data set consists of 160 surface sediment samples from three tropical-subtropical regions (East China Sea, South China Sea, and western Pacific), combining 54 new assemblage counts with taxonomically harmonized data from previous studies. Multivariate statistical analyses indicate that winter sea surface temperature at 10 m depth (SSTw) was the most significant environmental variable affecting the composition of radiolarian assemblages, allowing the development of an optimal calibration model (Locally Weighted-Weighted Averaging regression inverse deshrinking, R2cv = 0.88, root-mean-square error of prediction = 1.6°C). The dominant effect of SSTw on radiolarian assemblage composition in the western Pacific is attributed to the East Asian Winter Monsoon (EAWM), which is particularly strong in the marginal seas. To test the applicability of the calibration model on fossil radiolarian assemblages from the marginal seas, the calibration model was applied to two downcore records from the Okinawa Trough, covering the last 18 ka. We observe that these assemblages find most appropriate analogs among modern samples from the marginal basins (East China Sea and South China Sea). Downcore temperature reconstructions at both sites show similarities to known regional SST reconstructions, providing proof of concept for the new radiolarian-based SSTw calibration model.

Book review of Littler DM. Littler MM (2000) Caribbean Reef Plants An Identification Guide to the Reef Plants of the Caribbean, Bahamas, Florida and Gulf of Mexico

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

The Farther the Better: Effects of Multiple Environmental Variables on Reef Fish Assemblages along a Distance Gradient from River Influences.

PubMed

Neves, Leonardo M; Teixeira-Neves, Tatiana P; Pereira-Filho, Guilherme H; Araújo, Francisco G

2016-01-01

The conservation and management of site-attached assemblages of coastal reefs are particularly challenging because of the tremendous environmental variation that exists at small spatial scales. In this sense, understanding the primary sources of variation in spatial patterns of the biota is fundamental for designing effective conservation policies. We investigated spatial variation in fish assemblages around the windward and leeward sides of coastal islands situated across a gradient of riverine influence (13 km in length). Specifically, relationships between rocky reef fish assemblages and benthic, topographic and physical predictors were assessed. We hypothesized that river induced disturbances may overcome local habitat features in modeling spatial patterns of fish distribution. Fish assemblages varied primarily due to the strong directional gradient of riverine influence (22.6% of the estimated components of variation), followed by topographic complexity (15%), wave exposure (9.9%), and benthic cover (8%). The trophic structure of fish assemblages changed from having a high abundance of invertebrate feeders in macroalgae-dominated reefs close to river mouths to a high proportion of herbivores, planktivores and invertebrate feeder species in reefs with large boulders covered by epilithic algal matrices, as the distance from rivers increased. This gradient led to an increase of 4.5-fold in fish richness and fish trophic group diversity, 11-fold in fish biomass and 10-fold in fish abundance. Our results have implications for the conservation and monitoring of assemblages patchily distributed at small spatial scales. The major role of distance from river influences on fish assemblages rather than benthic cover and topographic complexity suggest that managing land-based activities should be a conservation priority toward reef restoration.

Changes in Nannoplankton Assemblages during the recovery of the Paleocene Eocene Thermal Maximum (PETM)

NASA Astrophysics Data System (ADS)

Grey, J. A.; Bralower, T. J.; Self-Trail, J. M.

2016-12-01

The recovery interval of the Paleocene Eocene Thermal Maximum (PETM) presents an opportunity to examine how organisms adapt to environmental change after a rapid global warming event. Calcareous nannoplankton survived the PETM, but we lack an understanding of how long it took for assemblages to adapt to a changing climate and the millennial-scale changes in their ecology. Here, we present the first high-resolution record of nannoplankton community change during the PETM recovery using a global data set (United States Geological Survey (USGS) Wilson Lake core, USGS Cam-Dor core, Ocean Drilling Program (ODP) Sites 690, 1265, and 1209) to assess millennial-scale assemblage change across space and time. Preliminary multivariate analyses on assemblage changes at Wilson Lake demonstrate that within 20,000 years after the onset, the structure of nannoplankton communities shifts from an assemblage dominated by warm eutrophic specialists to one dominated by eutrophic low salinity specialists. In the late recovery, ubiquitous taxa dominate assemblages, suggesting that the shelf environment became favorable for generalists. The latest part of the recovery is marked by a slight increase in oligotrophic specialists, indicating that the shelf became less eutrophic into the early Eocene. Overall, these analyses suggest that assemblages changed rapidly in response to cooling and changing ocean circulation during the early recovery of the PETM. Future analyses will build on these data by comparing assemblage change from other PETM coastal and open ocean sites. These analyses will help us better understand the spatial and temporal changes of nannoplankton communities on a global scale, lessons that can inform how nannoplankton will respond to future climate change.

Hydrologic filtering of fish life history strategies across the United States: implications for stream flow alteration

DOE PAGES

McManamay, Ryan A.; Frimpong, Emmanuel A.

2015-01-01

Lotic fish have developed life history strategies adapted to the natural variation in stream flow regimes. The natural timing, duration, and magnitude of flow events has contributed to the diversity, production, and composition of fish assemblages over time. Studies evaluating the role of hydrology in structuring fish assemblages have been more common at the local or regional scale with very few studies conducted at the continental scale. Furthermore, quantitative linkages between natural hydrologic patterns and fish assemblages are rarely used to make predictions of ecological consequences of hydrologic alterations. We ask two questions: (1) what is the relative role ofmore » hydrology in structuring fish assemblages at large scales? and (2) can relationships between fish assemblages and natural hydrology be utilized to predict fish assemblage responses to hydrologic disturbance? We developed models to relate fish life histories and reproductive strategies to landscape and hydrologic variables separately and then combined. Models were then used to predict the ecological consequences of altered hydrology due to dam regulation. Although hydrology plays a considerable role in structuring fish assemblages, the performance of models using only hydrologic variables was lower than that of models constructed using landscape variables. Isolating the relative importance of hydrology in structuring fish assemblages at the continental scale is difficult since hydrology is interrelated to many landscape factors. By applying models to dam-regulated hydrologic data, we observed some consistent predicted responses in fish life history strategies and modes of reproduction. In agreement with existing literature, equilibrium strategists are predicted to increase following dam regulation, whereas opportunistic and periodic species are predicted to decrease. In addition, dam regulation favors the selection of reproductive strategies with extended spawning seasons and preference for stable conditions.« less

Juvenile bottlenecks and salinity shape grey mullet assemblages in Mediterranean estuaries

NASA Astrophysics Data System (ADS)

Cardona, Luis; Hereu, Bernat; Torras, Xavier

2008-05-01

Previous research has suggested that competitive bottlenecks may exist for the Mediterranean grey mullets (Osteichthyes, Mugilidae) at the fry stage with the exotic Cyprinus carpio (Osteichthyes, Cyprinidae) playing a central role. As a consequence, the structure of grey mullet assemblages at later stages is thought to reflect previous competition as well as differences in osmoregulatory skills. This paper tests that hypothesis by examining four predictions about the relative abundance of five grey mullet species in 42 Western Mediterranean estuary sites from three areas (Aiguamolls de l'Empordà, Ebro Delta and Minorca) differing in the salinity level and occurrence of C. carpio. Field data confirmed the predictions as: (1) Liza aurata and Mugil cephalus were scarce everywhere and never dominated the assemblage; (2) Liza saliens dominated the assemblage where the salinity level was higher than 13; (3) Liza ramado always dominated the assemblage where the salinity level was lower than 13 and C. carpio was present; and (4) Chelon labrosus dominated the assemblage only where the salinity level was lower than 13 and C. carpio was absent. The catch per unit effort of C. labrosus of any size was smaller in the presence of C. carpio than where it had not been introduced, which is in agreement with the juvenile competitive bottleneck hypothesis. Discriminant analysis confirmed that the assemblage structure was linked to the salinity level and the occurrence of C. carpio for both early juveniles and late juveniles as well as adults. The data reported here reveal that the structure of grey mullet assemblages inhabiting Mediterranean estuaries is determined by salinity and competitive interactions at the fry stage.

Epibenthic communities of sedimentary habitats in a NE Atlantic deep seamount (Galicia Bank)

NASA Astrophysics Data System (ADS)

Serrano, A.; Cartes, J. E.; Papiol, V.; Punzón, A.; García-Alegre, A.; Arronte, J. C.; Ríos, P.; Lourido, A.; Frutos, I.; Blanco, M.

2017-12-01

Galicia Bank is a deep seamount included as Site of Community Importance (SCI) in the Spanish Natura 2000 Network proposal. In the present study, epibenthic assemblages of sedimentary habitats have been described, together with the main environmental factor explaining species and communities distribution. Five epibenthic assemblages have been identified. Depth was the main factor explaining assemblage distribution, and the role of sediment type, water masses, and coral framework presence is also discussed. Three assemblages are located in the summit: the shallowest one (730-770 m), in the boundary between Eastern North Atlantic Central Water (ENACW) and Mediterranean Overflow Water (MOW) water masses is typified by ophiuroids and characterized by medium sands. The second assemblage (770-800 m) typified by the bivalve Limopsis minuta and the solitary coral Flabellum chunii correspond with medium sands and MOW core; and the third typified by the presence of cold-water coral communities dominated by Lophelia pertusa and Madrepora oculata, also on the MOW influence. In the border of the summit, in the bank break, an assemblage located in the range 1000-1200 m is dominated by the urchin Cidaris cidaris and the sponge Thenea muricata. In the flat flanks around the bank, the deepest assemblage (1400-1800 m) is dominated by the holothurian Benthogone rosea, in a depth range dominated by the Labrador water (LSW) and in fine sands with highest contents of organic matter. Most of species appeared in a depth range smaller than 25% of total depth range sampled and in < 10% of samples. Differential preference of species is evident in the different trophic guilds, with a higher dominance of filter-feeders in the summit and of deposit-feeders in the deepest assemblage, and have clear links with nutrient dynamics in the bank.

Sponge assemblages on the deep Mediterranean continental shelf and slope (Menorca Channel, Western Mediterranean Sea)

NASA Astrophysics Data System (ADS)

Santín, Andreu; Grinyó, Jordi; Ambroso, Stefano; Uriz, Maria J.; Gori, Andrea; Dominguez-Carrió, Carlos; Gili, Josep-Maria

2018-01-01

Sponge assemblages on continental shelves and slopes around the world have been known about for centuries. However, due to limitations of the traditional sampling systems, data about individual sponge species rather than assemblages have been reported. This study characterizes sponge assemblages over a wide bathymetric range ( 50-350 m depth) and covering the entire continental shelf and the upper slope of the Menorca Channel, an area soon to be declared a Marine Protected Area (MPA) as part of the Natura 2000 Network. Quantitative analysis of 85 video-transects (a total linear distance of 75 km), together with representative collections to confirm species identifications, allowed us to discriminate six major assemblages. Differences in the assemblages mainly corresponded to differences in substrate type and depth. On the inner continental shelf, a semi-sciaphilous Axinellid assemblage dominated the rocky outcrops. Maërl beds on the inner continental shelf were dominated by Haliclona (Reniera) mediterranea, whereas the horny sponge Aplysina cavernicola and several other haliclonids mostly dominated maërl beds and rocky substrates of the outer shelf. Soft sediments on the shelf break hosted a monospecific Thenea muricata assemblage, whereas rocky substrates of the shelf break were characterized by a mixture of encrusting, columnar and fan-shaped sponges. Finally, the upper slope was dominated by Hamacantha (Vomerula) falcula and the hexactinellid Tretodictyum reiswigi. Overall, sponge diversity showed its highest values above the shelf break, plummeting severely on the upper slope. Despite this diversity decrease, we found very high densities (> 70 ind./m2) of sponges over vast areas of both the shelf break and the upper slope.

Spatiotemporal patterns of the fish assemblages downstream of the Gezhouba Dam on the Yangtze River.

PubMed

Tao, Jiangping; Gong, Yutian; Tan, Xichang; Yang, Zhi; Chang, Jianbo

2012-07-01

An explicit demonstration of the changes in fish assemblages is required to reveal the influence of damming on fish species. However, information from which to draw general conclusions regarding changes in fish assemblages is insufficient because of the limitations of available approaches. We used a combination of acoustic surveys, gillnet sampling, and geostatistical simulations to document the spatiotemporal variations in the fish assemblages downstream of the Gezhouba Dam, before and after the third impoundment of Three Gorges Reservoir (TGR). To conduct a hydroacoustic identification of individual species, we matched the size distributions of the fishes captured by gillnet with those of the acoustic surveys. An optimum threshold of target strength of -50 dB re 1 m(2) was defined, and acoustic surveys were purposefully extended to the selected fish assemblages (i.e., endemic Coreius species) that was acquired by the size and species selectivity of the gillnet sampling. The relative proportion of fish species in acoustic surveys was allocated based on the composition (%) of the harvest in the gillnet surveys. Geostatistical simulations were likewise used to generate spatial patterns of fish distribution, and to determine the absolute abundance of the selected fish assemblages. We observed both the species composition and the spatial distribution of the selected fish assemblages changed significantly after implementation of new flow regulation in the TGR, wherein an immediate sharp population decline in the Coreius occurred. Our results strongly suggested that the new flow regulation in the TGR impoundment adversely affected downstream fish species, particularly the endemic Coreius species. To determine the factors responsible for the decline, we associated the variation in the fish assemblage patterns with changes in the environment and determined that substrate erosion resulting from trapping practices in the TGR likely played a key role.

Temporal assemblage turnovers of intertidal foraminiferal communities from tropical (SE Caribbean) and temperate (NE England and SW Spain) regions

NASA Astrophysics Data System (ADS)

Costelloe, Ashleigh; Wilson, Brent; Horton, Benjamin P.; Hayek, Lee-Ann C.

2018-05-01

This is the first quantitative study of temporal assemblage turnovers of the relationships between intertidal foraminifera. Time series datasets collected from tropical Caroni Swamp and Claxton Bay (Trinidad, SE Caribbean) and temperate Cowpen Marsh (NE England, U.K.) and Bay of Cadiz (SW Spain) were used. The assemblage turnover index (ATI) examined species interrelationships through comparisons of monthly or biweekly species proportional abundances over one or two years. Species contributing to major assemblage turnovers (ATI > x + σ) were identified using the conditioned on-boundary index (CoBI). Foraminiferal species are heterogeneously distributed within the sediment; multiple sample stations at a study location cumulatively represent the foraminiferal metacommunity and clusters represent foraminiferal assemblages. The ATI and CoBI were applied to the proportional abundances of live specimens recorded for the metacommunity and assemblages at each location. At Caroni Swamp and Claxton Bay, major assemblage turnovers were driven by the most abundant species and the majority coincided with seasonal change or the arrival of the seasonal Orinoco plume in the Gulf of Paria. Seasonal turnovers of the foraminiferal metacommunities at temperate Cowpen Marsh and Bay of Cádiz occurred during the summer and winter. Major assemblage turnovers in the upper Cowpen Marsh occurred in the summer, and the lower marsh in the winter. Foraminiferans are useful bioindicators for monitoring the health of coastal environments. Understanding foraminiferal population dynamics will allow cyclical changes to be differentiated from abrupt and persistent changes, which are related to anthropogenic disturbances or long-term climate change. The ATI and CoBI are useful indices for quantitatively exploring relationships of foraminiferal populations over time.

Hydrologic filtering of fish life history strategies across the United States: implications for stream flow alteration

DOE Office of Scientific and Technical Information (OSTI.GOV)

McManamay, Ryan A.; Frimpong, Emmanuel A.

Lotic fish have developed life history strategies adapted to the natural variation in stream flow regimes. The natural timing, duration, and magnitude of flow events has contributed to the diversity, production, and composition of fish assemblages over time. Studies evaluating the role of hydrology in structuring fish assemblages have been more common at the local or regional scale with very few studies conducted at the continental scale. Furthermore, quantitative linkages between natural hydrologic patterns and fish assemblages are rarely used to make predictions of ecological consequences of hydrologic alterations. We ask two questions: (1) what is the relative role ofmore » hydrology in structuring fish assemblages at large scales? and (2) can relationships between fish assemblages and natural hydrology be utilized to predict fish assemblage responses to hydrologic disturbance? We developed models to relate fish life histories and reproductive strategies to landscape and hydrologic variables separately and then combined. Models were then used to predict the ecological consequences of altered hydrology due to dam regulation. Although hydrology plays a considerable role in structuring fish assemblages, the performance of models using only hydrologic variables was lower than that of models constructed using landscape variables. Isolating the relative importance of hydrology in structuring fish assemblages at the continental scale is difficult since hydrology is interrelated to many landscape factors. By applying models to dam-regulated hydrologic data, we observed some consistent predicted responses in fish life history strategies and modes of reproduction. In agreement with existing literature, equilibrium strategists are predicted to increase following dam regulation, whereas opportunistic and periodic species are predicted to decrease. In addition, dam regulation favors the selection of reproductive strategies with extended spawning seasons and preference for stable conditions.« less

Chemical and physical environmental conditions underneath mat- and canopy-forming macroalgae, and their effects on understorey corals.

PubMed

Hauri, Claudine; Fabricius, Katharina E; Schaffelke, Britta; Humphrey, Craig

2010-09-13

Disturbed coral reefs are often dominated by dense mat- or canopy-forming assemblages of macroalgae. This study investigated how such dense macroalgal assemblages change the chemical and physical microenvironment for understorey corals, and how the altered environmental conditions affect the physiological performance of corals. Field measurements were conducted on macroalgal-dominated inshore reefs in the Great Barrier Reef in quadrats with macroalgal biomass ranging from 235 to 1029 g DW m(-2) dry weight. Underneath mat-forming assemblages, the mean concentration of dissolved oxygen was reduced by 26% and irradiance by 96% compared with conditions above the mat, while concentrations of dissolved organic carbon and soluble reactive phosphorous increased by 26% and 267%, respectively. The difference was significant but less pronounced under canopy-forming assemblages. Dissolved oxygen declined and dissolved inorganic carbon and alkalinity increased with increasing algal biomass underneath mat-forming but not under canopy-forming assemblages. The responses of corals to conditions similar to those found underneath algal assemblages were investigated in an aquarium experiment. Coral nubbins of the species Acropora millepora showed reduced photosynthetic yields and increased RNA/DNA ratios when exposed to conditions simulating those underneath assemblages (pre-incubating seawater with macroalgae, and shading). The magnitude of these stress responses increased with increasing proportion of pre-incubated algal water. Our study shows that mat-forming and, to a lesser extent, canopy-forming macroalgal assemblages alter the physical and chemical microenvironment sufficiently to directly and detrimentally affect the metabolism of corals, potentially impeding reef recovery from algal to coral-dominated states after disturbance. Macroalgal dominance on coral reefs therefore simultaneously represents a consequence and cause of coral reef degradation.

The Farther the Better: Effects of Multiple Environmental Variables on Reef Fish Assemblages along a Distance Gradient from River Influences

PubMed Central

Neves, Leonardo M.; Teixeira-Neves, Tatiana P.; Pereira-Filho, Guilherme H.; Araújo, Francisco G.

2016-01-01

The conservation and management of site-attached assemblages of coastal reefs are particularly challenging because of the tremendous environmental variation that exists at small spatial scales. In this sense, understanding the primary sources of variation in spatial patterns of the biota is fundamental for designing effective conservation policies. We investigated spatial variation in fish assemblages around the windward and leeward sides of coastal islands situated across a gradient of riverine influence (13 km in length). Specifically, relationships between rocky reef fish assemblages and benthic, topographic and physical predictors were assessed. We hypothesized that river induced disturbances may overcome local habitat features in modeling spatial patterns of fish distribution. Fish assemblages varied primarily due to the strong directional gradient of riverine influence (22.6% of the estimated components of variation), followed by topographic complexity (15%), wave exposure (9.9%), and benthic cover (8%). The trophic structure of fish assemblages changed from having a high abundance of invertebrate feeders in macroalgae-dominated reefs close to river mouths to a high proportion of herbivores, planktivores and invertebrate feeder species in reefs with large boulders covered by epilithic algal matrices, as the distance from rivers increased. This gradient led to an increase of 4.5-fold in fish richness and fish trophic group diversity, 11-fold in fish biomass and 10-fold in fish abundance. Our results have implications for the conservation and monitoring of assemblages patchily distributed at small spatial scales. The major role of distance from river influences on fish assemblages rather than benthic cover and topographic complexity suggest that managing land-based activities should be a conservation priority toward reef restoration. PMID:27907017

Chemical and Physical Environmental Conditions Underneath Mat- and Canopy-Forming Macroalgae, and Their Effects on Understorey Corals

PubMed Central

Hauri, Claudine; Fabricius, Katharina E.; Schaffelke, Britta; Humphrey, Craig

2010-01-01

Disturbed coral reefs are often dominated by dense mat- or canopy-forming assemblages of macroalgae. This study investigated how such dense macroalgal assemblages change the chemical and physical microenvironment for understorey corals, and how the altered environmental conditions affect the physiological performance of corals. Field measurements were conducted on macroalgal-dominated inshore reefs in the Great Barrier Reef in quadrats with macroalgal biomass ranging from 235 to 1029 g DW m−2 dry weight. Underneath mat-forming assemblages, the mean concentration of dissolved oxygen was reduced by 26% and irradiance by 96% compared with conditions above the mat, while concentrations of dissolved organic carbon and soluble reactive phosphorous increased by 26% and 267%, respectively. The difference was significant but less pronounced under canopy-forming assemblages. Dissolved oxygen declined and dissolved inorganic carbon and alkalinity increased with increasing algal biomass underneath mat-forming but not under canopy-forming assemblages. The responses of corals to conditions similar to those found underneath algal assemblages were investigated in an aquarium experiment. Coral nubbins of the species Acropora millepora showed reduced photosynthetic yields and increased RNA/DNA ratios when exposed to conditions simulating those underneath assemblages (pre-incubating seawater with macroalgae, and shading). The magnitude of these stress responses increased with increasing proportion of pre-incubated algal water. Our study shows that mat-forming and, to a lesser extent, canopy-forming macroalgal assemblages alter the physical and chemical microenvironment sufficiently to directly and detrimentally affect the metabolism of corals, potentially impeding reef recovery from algal to coral-dominated states after disturbance. Macroalgal dominance on coral reefs therefore simultaneously represents a consequence and cause of coral reef degradation. PMID:20856882

Butterfly (Papilionoidea and Hesperioidea) assemblages associated with natural, exotic, and restored riparian habitats along the lower Colorado River, USA

USGS Publications Warehouse

Nelson, S.M.; Andersen, D.C.

1999-01-01

Butterfly assemblages were used to compare revegetated and natural riparian areas along the lower Colorado River. Species richness and correspondence analyses of assemblages showed that revegetated sites had fewer biological elements than more natural sites along the Bill Williams River. Data suggest that revegetated sites do not provide resources needed by some members of the butterfly assemblage, especially those species historically associated with the cottonwood/willow ecosystem. Revegetated sites generally lacked nectar resources, larval host plants, and closed canopies. The riparian system along the regulated river segment that contains these small revegetated sites also appears to have diminished habitat heterogeneity and uncoupled riparian corridors.Revegetated sites were static environments without the successional stages caused by flooding disturbance found in more natural systems. We hypothesize that revegetation coupled with a more natural hydrology is important for restoration of butterfly assemblages along the lower Colorado River. 

A Perspective on the Maillard Reaction and the Analysis of Protein Glycation by Mass Spectrometry: Probing the Pathogenesis of Chronic Disease

PubMed Central

Zhang, Qibin; Ames, Jennifer M.; Smith, Richard D.; Baynes, John W.; Metz, Thomas O.

2009-01-01

The Maillard reaction, starting from the glycation of protein and progressing to the formation of advanced glycation end-products (AGEs), is implicated in the development of complications of diabetes mellitus, as well as in the pathogenesis of cardiovascular, renal, and neurodegenerative diseases. In this perspective review, we provide an overview on the relevance of the Maillard reaction in the pathogenesis of chronic disease and discuss traditional approaches and recent developments in the analysis of glycated proteins by mass spectrometry. We propose that proteomics approaches, particularly bottom-up proteomics, will play a significant role in analyses of clinical samples leading to the identification of new markers of disease development and progression. PMID:19093874

A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease.

PubMed

Zhang, Qibin; Ames, Jennifer M; Smith, Richard D; Baynes, John W; Metz, Thomas O

2009-02-01

The Maillard reaction, starting from the glycation of protein and progressing to the formation of advanced glycation end-products (AGEs), is implicated in the development of complications of diabetes mellitus, as well as in the pathogenesis of cardiovascular, renal, and neurodegenerative diseases. In this perspective review, we provide an overview on the relevance of the Maillard reaction in the pathogenesis of chronic disease and discuss traditional approaches and recent developments in the analysis of glycated proteins by mass spectrometry. We propose that proteomics approaches, particularly bottom-up proteomics, will play a significant role in analyses of clinical samples leading to the identification of new markers of disease development and progression.

Witness of fluid-flow organization during high-pressure antigorite dehydration

NASA Astrophysics Data System (ADS)

López Sánchez-Vizcaíno, Vicente; Padrón-Navarta, José Alberto; Garrido, Carlos J.; Gómez-Pugnaire, María. Teresa

2010-05-01

The link between devolatilization reactions and fluid flow is crucial to unravel important geodynamic processes in subduction zones as deformation and element transfer is extremely controlled by the presence of water. At high confining pressure, significant fluid pressure gradients are expected in a reacting rock being dehydrated, because of its rather limited permeability [1]. Compactation-driven fluid flow seems to be an intrinsic mechanism occurring at devolatilization of viscolastic rocks. Nevertheless, and despite the important implications of this coupled deformation/fluid-migration mechanism for fluid transport, a conclusive confirmation of these processes by petrological and textural evidences in metamorphic terrains has been hampered by the scarcity of devolatilization fronts in the geological record. Evidences of high-pressure antigorite dehydration found at Cerro del Almirez (Betic Cordillera, Spain) [2] represent a noteworthy exception. Here, the transition between the hydrous protolith (antigorite serpentinite) and the prograde product assemblage (olivine + orthopyroxene + chlorite, chlorite harzburgite) is extremely well preserved and can be surveyed in detail. The maximum stability of the antigorite has been experimentally determined at ~680°C at 1.6-1.9 GPa [3]. Antigorite dehydration is accompanied by release of high amounts of high-pressure water-rich fluids (~ 9 wt.% fluid). Distinctive layers (up to 1 m thick) of transitional lithologies occur in between atg-serpentinite and chl-harburgite all along the devolatilization front, consisting of (1) chlorite-antigorite olivine-serpentinite, which gradually changes to (2) chlorite-antigorite-olivine-orthopyroxene serpentinite. These transitional lithologies are more massive and darker in color than atg-serpentinite and largely consist of coarse sized grains of antigorite and chlorite (250-500 μm). Antigorite in these assemblages is characterized by microstructural disorder features, which are lacking in antigorite far from the devolatilization front [4]. The sharp appearance of chlorite (Chl-in), crosscutting the serpentinite foliation, and coarsening of olivine define the upper limit of the transitional lithologies, whereas the lower limit (Atg-out) is gradational to chl-harzburgite. The modal increase of orthopyroxene is concomitant with the gradual disappearance of antigorite. The gradual disappearance of antigorite over short distances leads to the final prograde assemblage in the Chl-harzburgite with two contrasting textures: (1) coarse granular texture and (2) an intriguing spinifex-like texture (arborescent growth of centimeter-sized olivine and orthopyroxene). Both textures alternate at the meter to tens of meters scale over the entire massif. We interpret these textures as the result of contrasting pore fluid overpressure, reaction rates and fluid-flow organization shortly after the antigorite breakdown. These observations will be discussed on the frame of the reaction kinetic and the propagation of deformation associated to fluid pressure gradients. [1] Connolly, Journal of Geophysical Research 112 (B8), 18 (1997). [2] Trommsdorff, López Sánchez-Vizcaíno, Gómez-Pugnaire et al., Contrib Mineral Petr 132 (2), 139 (1998). [3] Padrón-Navarta, Hermann, Garrido et al., Contrib Mineral Petr 159 (1), 25 (2010). [4] Padrón-Navarta, López Sánchez-Vizcaíno, Garrido et al., Contrib Mineral Petr 156 (5), 679 (2008).

Anticipatory sensitization to repeated stressors: the role of initial cortisol reactivity and meditation/emotion skills training.

PubMed

Turan, Bulent; Foltz, Carol; Cavanagh, James F; Wallace, B Alan; Cullen, Margaret; Rosenberg, Erika L; Jennings, Patricia A; Ekman, Paul; Kemeny, Margaret E

2015-02-01

Anticipation may play a role in shaping biological reactions to repeated stressors-a common feature of modern life. We aimed to demonstrate that: (a) individuals who display a larger cortisol response to an initial stressor exhibit progressive anticipatory sensitization, showing progressively higher cortisol levels before subsequent exposures, and (b) attention/emotional skills training can reduce the magnitude of this effect on progressive anticipatory sensitization. Female school teachers (N=76) were randomly assigned to attention/emotion skills and meditation training or to a control group. Participants completed 3 separate Trier Social Stress Tests (TSST): at baseline (Session 1), post-training (Session 2), and five months post (Session 3). Each TSST session included preparing and delivering a speech and performing an arithmetic task in front of critical evaluators. In each session participants' salivary cortisol levels were determined before and after the stressor. Control participants with larger cortisol reactivity to the first stressor showed increasing anticipatory (pre-stressor) cortisol levels with each successive stressor exposure (TSST session)-suggesting progressive anticipatory sensitization. Yet this association was absent in the training group. Supplementary analyses indicated that these findings occurred in the absence of group differences in cortisol reactivity. Findings suggest that the stress response can undergo progressive anticipatory sensitization, which may be modulated by attention/emotion-related processes. An important implication of the construct of progressive anticipatory sensitization is a possible self-perpetuating effect of stress reactions, providing a candidate mechanism for the translation of short-to-long-term stress reactions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Muscovite-Dehydration Melting: A Textural Study of a Key Reaction in Transforming Continental Margin Strata Into a Migmatitic Orogenic Core

NASA Astrophysics Data System (ADS)

Dyck, B. J.; St Onge, M. R.; Waters, D. J.; Searle, M. P.

2015-12-01

Metamorphosed continental margin sedimentary sequences, which comprise the dominant tectonostratigraphic assemblage exposed in orogenic hinterlands, are crucial to understanding the architecture and evolution of collisional mountain belts. This study explores the textural effect of anatexis in amphibolite-grade conditions and documents the mineral growth mechanisms that control nucleation and growth of K-feldspar, sillimanite and silicate melt. The constrained textural evolution follows four stages: 1) Nucleation - K-feldspar is documented to nucleate epitaxially on isomorphic plagioclase in quartzofeldspathic (psammitic) domains, whereas sillimanite nucleates in the Al-rich (pelitic) domain, initially on [001] mica planes. The first melt forms at the site of muscovite breakdown. 2) Chemically driven growth - In the quartzofeldspathic domain, K-feldspar progressively replaces plagioclase by a K+ - Na+ cation transfer reaction, driven by the freeing of muscovite-bound K+ during breakdown of the mica. Sillimanite forms intergrowths with the remaining hydrous melt components, contained initially in ovoid clots. 3) Merge and coarsening - With an increase in pressure, melt and sillimanite migrate away from clots along grain boundaries. A melt threshold is reached once the grain-boundary network is wetted by melt, increasing the length-scale of diffusion, resulting in grain boundary migration and grain-size coarsening. The melt threshold denotes the transition to an open-system on the lithology scale, where melt is a transient phase. 4) Residual melt crystallization - Residual melt crystallizes preferentially on existing peritectic grains as anatectic quartz, plagioclase, and K-feldspar. As the system cools and closes, grain growth forces melt into the intersections of grain-boundaries, recognized as irregular shaped melt films, or as intergrowths of the volatile-rich phases (i.e. Tur-Ms-Ap). In the Himalayan metamorphic core these processes result in the formation of: pelitic K-feldspar augen gneiss, stockwork leucogranites, and an effective strengthening of the hinterland, as evidenced by a switch in tectonic deformation style, from thin-skinned cover sequence thrust imbrication and folding to out-of-sequence basement-involved thick-skinned thrusting and folding.

The formation of the dolomite-analogue norsethite: Reaction pathway and cation ordering

NASA Astrophysics Data System (ADS)

Pimentel, Carlos; Pina, Carlos M.

2014-10-01

Reaction pathways and cation ordering mechanisms involved in the formation of the mineral dolomite in nature still remain poorly understood. This is mainly due to the experimental problems posed by the synthesis of dolomite at ambient conditions, which preclude monitoring its formation in reasonable time scales. However, processes leading to the crystallization of fully-ordered dolomite-like structures can be studied by conducting experiments with mineral analogues, which are more readily precipitated. In this paper we present a study of the formation of the dolomite-analogue norsethite [BaMg(CO3)2] from a slurry which was aged at room temperature during 14 days. We found that norsethite forms by two dissolution-crystallization reactions from an initial amorphous nano-sized precipitate. The first reaction produces a mineral assemblage composed by witherite [BaCO3], northupite [Na3Mg(CO3)2Cl] and norsethite. The second dissolution-crystallization process leads to the almost complete depletion of witherite and northupite in favor of norsethite. While the composition of norsethite crystals rapidly reaches a Ba/Mg = 1 ratio, X-ray diffraction peaks indicate an increase in the crystallinity of those crystals during the first 48 h of reaction. Simultaneously, Ba-Mg cation ordering increases, as shown by the evolution of intensity ratios of certain superstructure and structure reflections. Altogether, these results demonstrate that the formation of fully-ordered norsethite occurs by a sequence of solvent-mediated processes which involve a number of precursors. Our study also suggests that similar processes might lead to the formation of dolomite in natural environments.

Assessing tree species assemblages in highly disturbed Puerto Rican karst landscapes using forest inventory data.

Treesearch

Thomas James Brandeis

2006-01-01

Tree species assemblages described by landscape-scale forest inventory data both agreed and differed from those described by intensive, site specific studies in Puerto Rico’s highly disturbed northern karst belt. Species assemblages found on hill tops (typified by Tabebuia heterophylla or Bursera simaruba with Coccoloba diversifolia, Licaria parvifolia, and Drypetes...

Woods from the Miocene Bakate Formation, Ethiopia : anatomical characteristics, estimates of original specific gravity and ecological inferences

Treesearch

E.A. Wheeler; M.C. Wiemann; J.G. Fleagle

2007-01-01

An assemblage of permineralized woods from the Miocene Bakate Formation, Fejej Plain, Ethiopia, is described. This assemblage of twelve wood types differs from other Miocene wood assemblages known from Ethiopia. Cell wall percentages of the woods were determined to estimate the original specific gravities of the woods in order to better understand the Miocene...

Fish assemblage production estimates in Appalachian streams across a latitudinal and temperature gradient

Treesearch

Bonnie J.E. Myers; C. Andrew Dolloff; Jackson R. Webster; Keith H. Nislow; Brandon Fair; Andrew L. Rypel

2017-01-01

Production of biomass is central to the ecology and sustainability of fish assemblages. The goal of this study was to empirically estimate and compare fish assemblage production, production-to-biomass (P/B) ratios and species composition for 25 second- to third-order streams spanning the Appalachian Mountains (from Vermont to North Carolina) that vary in their...

Assemblage Organization in Stream Fishes: Effects of Enviromental Variation and Interspecific Interactions

Treesearch

Gary D. Grossman; Robert E. Ratajczak; Maurice Crawford; Mary C. Freeman

1998-01-01

We assessed the relative importance of environmental variation, interspecific competition for space, and predator abundance on assemblage structure and microhabitat use in a stream fish assemblage inhabiting Coweeta Creek, North Carolina, USA. Our study encompassed a l0-yr time span (1983-1992) and included some of the highest and lowest flows in the last 58 years. We...

Here Comes the Sun ... and I Say, "It' an Assemblage"

ERIC Educational Resources Information Center

Skophammer, Karen

2011-01-01

In this article, the author discusses how she combines science lesson with a hands-on art project. She used the wonderfully creative suns shown on the Sunday edition of "The CBS Morning Show" to give the students fodder for thought. She describes how to create an assemblage. An assemblage is like a collage, but it moves past the two-dimensional…

Diversity, abundance, and size structure of bivalve assemblages in the Sipsey River, Alabama

Treesearch

Wendell R. Haag; Melvin L. Jr. Warren

2010-01-01

1. Patterns of mussel diversity and assemblage structure in the Sipsey River, Alabama, are described. Qualitative data were used to describe river-wide patterns of diversity. Quantitative data were used to describe the structure of mussel assemblages at several sites based on whole-substrate sampling that ensured all size classes were detected. 2. Major human impacts...

Assembly rules for functional groups of North American shrews: effects of geographic range and habitat partitioning

Treesearch

Timothy S. McCay; Matthew J. Lovallo; W. Mark Ford; Michael A. Menzel; Michael A. Menzel

2004-01-01

We examined the representation of shrew species within assemblages at 197 sites in the southern Appalachian Mountains, USA. Assemblages were classified according to representation of functional groups, including fossorial, small epigeal, and large epigeal. Average (9?SD) species richness was 2.99?1.0 and assemblages averaged 0.8 species in the fossorial and large...

Quantifying assemblage turnover and species contributions at ecologic boundaries.

PubMed

Hayek, Lee-Ann C; Wilson, Brent

2013-01-01

Not all boundaries, whether stratigraphical or geographical, are marked by species-level changes in community composition. For example, paleodata for some sites do not show readily discernible glacial-interglacial contrasts. Rather, the proportional abundances of species can vary subtly between glacials and interglacials. This paper presents a simple quantitative measure of assemblage turnover (assemblage turnover index, ATI) that uses changes in species' proportional abundances to identify intervals of community change. A second, functionally-related index (conditioned-on-boundary index, CoBI) identifies species contributions to the total assemblage turnover. With these measures we examine benthonic foraminiferal assemblages to assess glacial/interglacial contrasts at abyssal depths. Our results indicate that these measures, ATI and CoBI, have potential as sequence stratigraphic tools in abyssal depth deposits. Many peaks in the set of values of ATI coincide with terminations at the end of glaciations and delineate peak-bounded ATI intervals (PATIs) separated by boundaries that approximate to glacial terminations and to transgressions at neritic depths. These measures, however, can be used to evaluate the assemblage turnover and composition at any defined ecological or paleoecological boundary. The section used is from Ocean Drilling Program (OPD) Hole 994C, drilled on the Blake Ridge, offshore SE USA.

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil.

PubMed

Bissoli, Lorena B; Bernardino, Angelo F

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil.

Cretaceous radiolarians from Baliojong ophiolite sequence, Sabah, Malaysia

NASA Astrophysics Data System (ADS)

Jasin, Basir; Tongkul, Felix

2013-10-01

The Baliojong ophiolite sequence exposed along the Baliojong River in Northern Sabah consists of volcanic rocks, mostly basalts, overlain by sedimentary layers consisting of well-bedded cherts, mudstones and sandstones. The ophiolite sequence occurs as steeply-dipping overturned thrust slices oriented approximately north-south. A total of 42 chert samples were collected from the sedimentary layers. However, most of the samples contain poorly preserved radiolarians. Only nine samples yielded moderately well-preserved radiolarians from three selected thrust slices. A total of 32 taxa were identified. Based on the stratigraphic distribution of selected taxa, the radiolarians can be divided into two assemblage zones. The first assemblage zone is Dictyomitra communis Zone characterized by the occurrence of Dictyomitra communis, Archaeodictyomitra (?) lacrimula, Sethocapsa (?) orca, Dictyomitra pseudoscalaris, and Pantanellium squinaboli. The assemblage indicates Barremian to Aptian in age. The second assemblage zone Pseudodictyomitra pseudomacrocephala Zone contains Pseudodictyomitra pseudomacrocephala, Dictyomitra gracilis, Dictyomitra montesserei, Xitus mclaughlini, and Dictyomitra obesa. This assemblage indicates an age of Albian and the presence of Pseudodictyomitra tiara suggests the age may extend up to Cenomanian. Each thrust slice yielded more or less similar radiolarian assemblages indicating that they all came from the same sedimentary layers.

Fish assemblage shifts in the Powder River of Wyoming: an unregulated prairie river system previously considered to be relatively pristine.

USGS Publications Warehouse

Senecal, Anna C.; Walters, Annika W.; Hubert, Wayne A.

2016-01-01

Wyoming’s Powder River is considered an example of a pristine prairie river system. While the river hosts a largely native fish assemblage and remains unimpounded over its 1,146-km course to the Yellowstone River confluence, the hydrologic regime has been altered through water diversion for agriculture and natural gas extraction and there has been limited study of fish assemblage structure. We analyzed fish data collected from the mainstem Powder River in Wyoming between 1896 and 2008. Shifts in presence/absence and relative abundance of fish species, as well as fish assemblage composition, were assessed among historical and recent samples. The recent Powder River fish assemblage was characterized by increased relative abundances of sand shiner Notropis stramineus and plains killifish Fundulus zebrinus, and decreases in sturgeon chub Macrhybopsis gelida. Shifts in fish species relative abundance are linked to their reproductive ecology with species with adhesive eggs generally increasing in relative abundance while those with buoyant drifting eggs are decreasing. Assemblage shifts could be the result of landscape level changes, such as the loss of extreme high and low flow events and changing land use practices.

Effects of a mulch layer on the assemblage and abundance of mesostigmatan mites and other arthropods in the soil of a sugarcane agro-ecosystem in Australia.

PubMed

Manwaring, M; Wallace, H M; Weaver, H J

2018-03-01

Sugarcane farmers can utilise a soil conservation technique called green cane trash blanketing, a form of mulching that can increase plant productivity through a number of channels, e.g., via altering soil physical, chemical and biological characteristics, and influence soil arthropod assemblages. Predatory mites (Mesostigmata) are important components of soil communities because they can control populations of other soil-dwelling pest species. Our aim was to characterise mulch-influenced predatory Mesostigmata community assemblages in sugarcane soils in Queensland, Australia. We found that application of a mulch layer significantly increased the abundance of Mesostigmata, and oribatid mites and collembolans, in soils. Furthermore, we observed that the assemblages of Mesostigmata in soil covered by mulch were significantly different to those in bare soil; and the assemblages of Mesostigmata changed over time. The assemblages of Mesostigmata, but not Oribatida or collembolans, were significantly different in soil under mulch depending on whether the mulch was freshly laid, or decomposing. Our results show that the use of mulch, specifically the green cane trash blanket, can increase overall microarthropod abundance including Mesostigmata. This is likely due to increased habitat complexity and changing resource availability.

Impact of ocean acidification and warming on the productivity of a rock pool community.

PubMed

Legrand, Erwann; Riera, Pascal; Bohner, Olivier; Coudret, Jérôme; Schlicklin, Ferdinand; Derrien, Marie; Martin, Sophie

2018-05-01

This study examined experimentally the combined effect of ocean acidification and warming on the productivity of rock pool multi-specific assemblages, composed of coralline algae, fleshy algae, and grazers. Natural rock pool communities experience high environmental fluctuations. This may confer physiological advantage to rock pool communities when facing predicted acidification and warming. The effect of ocean acidification and warming have been assessed at both individual and assemblage level to examine the importance of species interactions in the response of assemblages. We hypothesized that rock pool assemblages have physiological advantage when facing predicted ocean acidification and warming. Species exhibited species-specific responses to increased temperature and pCO 2 . Increased temperature and pCO 2 have no effect on assemblage photosynthesis, which was mostly influenced by fleshy algal primary production. The response of coralline algae to ocean acidification and warming depended on the season, which evidenced the importance of physiological adaptations to their environment in their response to climate change. We suggest that rock pool assemblages are relatively robust to changes in temperature and pCO 2 , in terms of primary production. Copyright © 2018 Elsevier Ltd. All rights reserved.

Rare species contribute disproportionately to the functional structure of species assemblages.

PubMed

Leitão, Rafael P; Zuanon, Jansen; Villéger, Sébastien; Williams, Stephen E; Baraloto, Christopher; Fortunel, Claire; Mendonça, Fernando P; Mouillot, David

2016-04-13

There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. © 2016 The Author(s).

Quantifying Assemblage Turnover and Species Contributions at Ecologic Boundaries

PubMed Central

Hayek, Lee-Ann C.; Wilson, Brent

2013-01-01

Not all boundaries, whether stratigraphical or geographical, are marked by species-level changes in community composition. For example, paleodata for some sites do not show readily discernible glacial-interglacial contrasts. Rather, the proportional abundances of species can vary subtly between glacials and interglacials. This paper presents a simple quantitative measure of assemblage turnover (assemblage turnover index, ATI) that uses changes in species' proportional abundances to identify intervals of community change. A second, functionally-related index (conditioned-on-boundary index, CoBI) identifies species contributions to the total assemblage turnover. With these measures we examine benthonic foraminiferal assemblages to assess glacial/interglacial contrasts at abyssal depths. Our results indicate that these measures, ATI and CoBI, have potential as sequence stratigraphic tools in abyssal depth deposits. Many peaks in the set of values of ATI coincide with terminations at the end of glaciations and delineate peak-bounded ATI intervals (PATIs) separated by boundaries that approximate to glacial terminations and to transgressions at neritic depths. These measures, however, can be used to evaluate the assemblage turnover and composition at any defined ecological or paleoecological boundary. The section used is from Ocean Drilling Program (OPD) Hole 994C, drilled on the Blake Ridge, offshore SE USA. PMID:24130679

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil

PubMed Central

Bissoli, Lorena B.

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil. PMID:29507833

Rare species contribute disproportionately to the functional structure of species assemblages

PubMed Central

Zuanon, Jansen; Williams, Stephen E.; Baraloto, Christopher; Mendonça, Fernando P.

2016-01-01

There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. PMID:27053754

Environmental constraints on the compositional and phylogenetic beta-diversity of tropical forest snake assemblages.

PubMed

Moura, Mario R; Costa, Henrique C; Argôlo, Antônio J S; Jetz, Walter

2017-09-01

The ongoing biodiversity crisis increases the importance and urgency of studies addressing the role of environmental variation on the composition and evolutionary history of species assemblages, but especially the tropics and ectotherms remain understudied. In regions with rainy summers, coexistence of tropical ectothermic species may be determined by the partitioning of the climatic niche, as ectotherms can rely on water availability and thermoregulatory behaviour to buffer constraints along their climatic niche. Conversely, tropical ectotherms facing dry summers would have fewer opportunities to climatic niche partitioning and other processes rather than environmental filtering would mediate species coexistence. We used 218 snake assemblages to quantify the compositional (CBD) and phylogenetic (PBD) beta-diversity of snakes in the Atlantic Forest (AF) hotspot, South America. We identify two AF regions with distinct climatological regimes: dry summers in the northern-AF and rainy summers in the southern-AF. While accounting for the influence of multiscale spatial processes, we disentangle the relative contribution of thermal, water-related and topographic conditions in structuring the CBD and PBD of snake assemblages, and determine the extent in which snake assemblages under distinct climatological regimes are affected by environmental filtering. Thermal conditions best explain CBD and PBD of snakes for the whole AF, whereas water-related factors best explain the structure of snake assemblages within a same climatological regime. CBD and PBD patterns are similarly explained by spatial factors but snake assemblages facing dry summers are more affected by spatial processes operating at fine to intermediate spatial scale, whereas those assemblages in regions with rainy summers have a stronger signature of coarse-scale processes. As expected, environmental filtering plays a stronger role in southern-AF than northern-AF, and the synergism between thermal and water-related conditions is the key cause behind this difference. Differences in climatological regimes within the tropics affect processes mediating species coexistence. The influence of broad-scale gradients (e.g. temperature and precipitation) in structuring tropical ectothermic assemblages is greater in regions with rainy summers where climatic niche partitioning is more likely. Our findings highlight the potential stronger role of biotic interactions and neutral processes in structuring ectothermic assemblages facing changes towards warmer and dryer climates. © 2017 The Authors. Journal of Animal Ecology © 2017 British Ecological Society.

Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities

PubMed Central

Emerson, Brent C.; Cicconardi, Francesco; Fanciulli, Pietro P.; Shaw, Peter J. A.

2011-01-01

There has been much recent interest and progress in the characterization of community structure and community assembly processes through the application of phylogenetic methods. To date most focus has been on groups of taxa for which some relevant detail of their ecology is known, for which community composition is reasonably easily quantified and where the temporal scale is such that speciation is not likely to feature. Here, we explore how we might apply a molecular genetic approach to investigate community structure and assembly at broad taxonomic and geographical scales, where we have little knowledge of species ecology, where community composition is not easily quantified, and where speciation is likely to be of some importance. We explore these ideas using the class Collembola as a focal group. Gathering molecular evidence for cryptic diversity suggests that the ubiquity of many species of Collembola across the landscape may belie greater community complexity than would otherwise be assumed. However, this morphologically cryptic species-level diversity poses a challenge for attempts to characterize diversity both within and among local species assemblages. Recent developments in high throughput parallel sequencing technology, combined with mtDNA barcoding, provide an advance that can bring together the fields of phylogenetic and phylogeographic analysis to bear on this problem. Such an approach could be standardized for analyses at any geographical scale for a range of taxonomic groups to quantify the formation and composition of species assemblages. PMID:21768154

Magnetic properties in an ash flow tuff with continuous grain size variation: a natural reference for magnetic particle granulometry

USGS Publications Warehouse

Till, J.L.; Jackson, M.J.; Rosenbaum, J.G.; Solheid, P.

2011-01-01

The Tiva Canyon Tuff contains dispersed nanoscale Fe-Ti-oxide grains with a narrow magnetic grain size distribution, making it an ideal material in which to identify and study grain-size-sensitive magnetic behavior in rocks. A detailed magnetic characterization was performed on samples from the basal 5 m of the tuff. The magnetic materials in this basal section consist primarily of (low-impurity) magnetite in the form of elongated submicron grains exsolved from volcanic glass. Magnetic properties studied include bulk magnetic susceptibility, frequency-dependent and temperature-dependent magnetic susceptibility, anhysteretic remanence acquisition, and hysteresis properties. The combined data constitute a distinct magnetic signature at each stratigraphic level in the section corresponding to different grain size distributions. The inferred magnetic domain state changes progressively upward from superparamagnetic grains near the base to particles with pseudo-single-domain or metastable single-domain characteristics near the top of the sampled section. Direct observations of magnetic grain size confirm that distinct transitions in room temperature magnetic susceptibility and remanence probably denote the limits of stable single-domain behavior in the section. These results provide a unique example of grain-size-dependent magnetic properties in noninteracting particle assemblages over three decades of grain size, including close approximations of ideal Stoner-Wohlfarth assemblages, and may be considered a useful reference for future rock magnetic studies involving grain-size-sensitive properties.

TRAVELING WAVE PYROTRON

DOEpatents

Post, R.F.

1963-06-11

The invention relates to a pyrotron, i.e., magnetic mirror device, designed for continuous operation in producing a high-temperature fusion reaction plasma and for directly converting the plasma energy into electrical power. The device utilizes a system in which an axially symmetric magnetic field is produced and transports plasma through a first zone of progressively rising field intensity, a second reaction zone of slowly increasing intensity, and thenceforth through a third zone of progressively decreasing intensity wherein the plasma expands against the magnetic field thereby producing electrical current in magnetic field generating solenoids associated with said third zone. (AEC)

Oscillating brittle and viscous behavior through the earthquake cycle in the Red River Shear Zone: Monitoring flips between reaction and textural softening and hardening

NASA Astrophysics Data System (ADS)

Wintsch, Robert P.; Yeh, Meng-Wan

2013-03-01

Microstructures associated with cataclasites and mylonites in the Red River shear zone in the Diancang Shan block, Yunnan Province, China show evidence for both reaction hardening and softening at lower greenschist facies metamorphic conditions. The earliest fault-rocks derived from Triassic porphyritic orthogneiss protoliths are cataclasites. Brittle fractures and crushed grains are cemented by newly precipitated quartz. These cataclasites are subsequently overprinted by mylonitic fabrics. Truncations and embayments of relic feldspars and biotites show that these protolith minerals have been dissolved and incompletely replaced by muscovite, chlorite, and quartz. Both K-feldspar and plagioclase porphyroclasts are truncated by muscovite alone, suggesting locally metasomatic reactions of the form: 3K-feldspar + 2H+ = muscovite + 6SiO2(aq) + 2K+. Such reactions produce muscovite folia and fish, and quartz bands and ribbons. Muscovite and quartz are much weaker than the reactant feldspars and these reactions result in reaction softening. Moreover, the muscovite tends to align in contiguous bands that constitute textural softening. These mineral and textural modifications occurred at constant temperature and drove the transition from brittle to viscous deformation and the shift in deformation mechanism from cataclasis to dissolution-precipitation and reaction creep. These mylonitic rocks so produced are cut by K-feldspar veins that interrupt the mylonitic fabric. The veins add K-feldspar to the assemblage and these structures constitute both reaction and textural hardening. Finally these veins are boudinaged by continued viscous deformation in the mylonitic matrix, thus defining a late ductile strain event. Together these overprinting textures and microstructures demonstrate several oscillations between brittle and viscous deformation, all at lower greenschist facies conditions where only frictional behavior is predicted by experiments. The overlap of the depths of greenschist facies conditions with the base of the crustal seismic zone suggests that the implied oscillations in strain rate may have been related to the earthquake cycle.

Adverse Effects of Iodine-derived Intravenous Radiopaque Contrast Media.

PubMed

Matthews, Eric P

2015-01-01

Although the advent of nonionic low-osmolar contrast agents has reduced the probability of a reaction to radiopaque contrast media derived from tri-iodinated benzoic acid, reactions still occur. Radiologic technologists must understand and know how to manage adverse effects of contrast media. Prompt attention to patients who exhibit the early signs of an adverse reaction can help to ensure the reaction does not progress to become severe or life-threatening.

Investigating the organic carbon cycle and the anaerobic oxidation of methane in the Guaymas Basin: a biogeochemical approach

NASA Astrophysics Data System (ADS)

Cathalot, C.; Decker, C.; Caprais, J.; Ruffine, L.; Le Bruchec, J.; Olu, K.

2013-12-01

The Guaymas Basin is a pretty unique environment located in the Gulf of California and characterized by the emanation of fluids enriched in hydrocarbon, mainly methane, and sulfides. In this peculiar environment, both cold seeps and hydrothermal vents co-exist very closely, and are separated only by a few kilometers. In addition, highly productive surface waters and strong terrestrial inputs are responsible for strong sedimentation rates in this area. This special geological system allows for the development of various and complex macrofaunal and/or bacterial assemblages, based on chemosynthetic activity. These sea-bottom communities have been previously described [1,2] and several studies have demonstrated the occurrence of Anaerobic Oxidation of Methane (AOM) in the shallow sediment layers. Nevertheless, the quantification of the biogeochemical processes (e.g. rates, relative proportions) involved in both ecosystems in relation with the associated communities, and their role in the local organic carbon (OC) cycle is still lacking. Using a diagenetic modeling approach, this study aims at studying the OC production and recycling processes by describing the biogeochemical pathways and their associated rates in the ecosystems from the Guaymas Basin. Twelve stations presenting distinct biological assemblages (microbial mats, vesicomyids and bare sediment) were selected among both cold-seeps and hydrothermal vents sites from the Guaymas basin. A transport-reaction model including respiration, sulfate reduction, methanogenesis and AOM was developed and applied to each station. To constrain the model, at each station, cores were sampled using an ROV and the pore-waters extracted using Rhizon syringes. Pore-water concentrations of CH4, SO42-, Cl- and H2S were then measured. In addition, ex situ O2 microprofiles equipped with microsensors and in situ incubations using benthic chambers were performed to estimate the sediment uptake rates (O2, H2S, CH4). The overall dataset was used to feed the model. The preliminary results indicate 1) significant differences of biogeochemical processes between the different biological assemblages and 2) between the cold seeps and hydrothermal vents sites. Model outputs show the occurrence of AOM and sulfate reduction at all sites except the reference (i.e. bare sediment) confirming hence the chemosynthetic activity (OC production) within the specific biological assemblages (mats and Vesicomyid). AOM in bacterial mats was more active in hydrothermal vents than in cold-seeps. In addition, the results indicate strong sulfate reduction rates in Vesicomyids assemblages but with a clear mismatch between modeled and measured H2S concentrations in the sediment: such differences reflect the symbiosis chemosynthetic activity (i.e. the H2S consumption) within the organisms. This integrated model-data approach proves hence to be useful to infer the biogeochemical functioning of biological ecosystems. [1] Kallmeyer, J. & Boetius, A (2004): Applied and Environmental Microbiology, 70, 2, 1231-1233. [2] Biddle J. F. et al. (2012). ISME J. 6 1018-1031

Arthropod assemblages on native and nonnative plant species of a coastal reserve in California.

PubMed

Fork, Susanne K

2010-06-01

Biological invasions by nonnative plant species are a widespread phenomenon. Many studies have shown strong ecological impacts of plant invasions on native plant communities and ecosystem processes. Far fewer studies have examined effects on associated animal communities. From the perspective of a reserve's land management, I addressed the question of whether arthropod assemblages on two nonnative plant species of concern were impoverished compared with those assemblages associated with two predominant native plant species of that reserve. If the nonnative plant species, Conium maculatum L., and Phalaris aquatica L., supported highly depauperate arthropod assemblages compared with the native plant species, Baccharis pilularis De Candolle and Leymus triticoides (Buckley) Pilger, this finding would provide additional support for prioritizing removal of nonnatives and restoration of natives. I assessed invertebrate assemblages at the taxonomic levels of arthropod orders, Coleoptera families, and Formicidae species, using univariate analyses to examine community attributes (richness and abundance) and multivariate techniques to assess arthropod assemblage community composition differences among plant species. Arthropod richness estimates by taxonomic level between native and nonnative vegetation showed varying results. Overall, arthropod richness of the selected nonnative plants, examined at higher taxonomic resolution, was not necessarily less diverse than two of common native plants found on the reserve, although differences were found among plant species. Impacts of certain nonnative plant species on arthropod assemblages may be more difficult to elucidate than those impacts shown on native plants and ecosystem processes.

Oil pipeline corridor through an intact forest alters ground beetle (Coleoptera: Carabidae) assemblages in southeastern Ohio.

PubMed

Silverman, Bareena; Horn, David J; Purrington, Foster F; Gandhi, Kamal J K

2008-06-01

Litter-dwelling ground beetle (Coleoptera: Carabidae) assemblages were monitored 1 yr after the construction of a corridor for installation of an oil pipeline along a xeric ridge-top forest in southeastern Ohio. After the creation of the corridor, three distinct habitats were evident in these sites: open corridor, ecotone areas around the corridor, and undisturbed forest interior. Carabidae were collected using directional pitfall traps that were placed parallel and perpendicular to the corridor in each of the three habitats. Results indicate that more carabids were present in the ecotone than in the other two habitats. Carabid diversity as estimated by rarefaction was highest in the corridor followed by ecotone and forest interior. Generalist and forest specialists such as Synuchus impunctatus (Say), Carabus goryi Dejean, and Pterostichus trinarius (Casey) were present in greater numbers in the forest interior and ecotone assemblages. In contrast, open-habitat specialists such as Harpalus pensylvanicus (DeGeer) and Selenophorus opalinus (LeConte) were present in greater numbers in the corridor assemblages. Carabid assemblages of the corridor were distinct from those of the ecotone and forest interior, whereas the latter two habitats had very similar assemblages. The successional pathway of the corridor carabid assemblage will therefore be likely different from that of the forest interior and ecotone. Overall, results indicate that construction of the oil pipeline corridor had significant short-term effects on the carabid numbers, diversity, and species composition because of ensuing habitat changes and fragmentation of the forest.

Giardia spp. Are Commonly Found in Mixed Assemblages in Surface Water, as Revealed by Molecular and Whole-Genome Characterization

PubMed Central

Tsui, Clement K.-M.; Hsiao, William W. L.; Uyaguari-Diaz, Miguel I.; Ho, Jordan; Tang, Patrick; Isaac-Renton, Judith

2015-01-01

Giardia is the most common parasitic cause of gastrointestinal infections worldwide, with transmission through surface water playing an important role in various parts of the world. Giardia duodenalis (synonyms: G. intestinalis and G. lamblia), a multispecies complex, has two zoonotic subtypes, assemblages A and B. When British Columbia (BC), a western Canadian province, experienced several waterborne giardiasis outbreaks due to unfiltered surface drinking water in the late 1980s, collection of isolates from surface water, as well as from humans and beavers (Castor canadensis), throughout the province was carried out. To better understand Giardia in surface water, 71 isolates, including 29 from raw surface water samples, 29 from human giardiasis cases, and 13 from beavers in watersheds from this historical library were characterized by PCR. Study isolates also included isolates from waterborne giardiasis outbreaks. Both assemblages A and B were identified in surface water, human, and beavers samples, including a mixture of both assemblages A and B in waterborne outbreaks. PCR results were confirmed by whole-genome sequencing (WGS) for one waterborne outbreak and supported the clustering of human, water, and beaver isolates within both assemblages. We concluded that contamination of surface water by Giardia is complex, that the majority of our surface water isolates were assemblage B, and that both assemblages A and B may cause waterborne outbreaks. The higher-resolution data provided by WGS warrants further study to better understand the spread of Giardia. PMID:25956776

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Dongfang; Voigt, Thomas B.; Kent, Angela D.

Here, bacterial assemblages, especially diazotroph assemblages residing in the rhizomes and the rhizosphere soil of Miscanthus × giganteus, contribute to plant growth and nitrogen use efficiency. However, the composition of these microbial communities has not been adequately explored nor have the potential ecological drivers for these communities been sufficiently studied. This knowledge is needed for understanding and potentially improving M. × giganteus – microbe interactions, and further enhancing sustainability of M. × giganteus production. In this study, cultivated M. × giganteus from four sites in Illinois, Kentucky, Nebraska, and New Jersey were collected to examine the relative influences of soilmore » conditions and plant compartments on assembly of the M. × giganteus-associated microbiome. Automated ribosomal intergenic spacer (ARISA) and terminal restriction fragment length polymorphism (T-RFLP) targeting the nifH gene were applied to examine the total bacterial communities and diazotroph assemblages that reside in the rhizomes and the rhizosphere. Distinct microbial assemblages were detected in the endophytic and rhizosphere compartments. Site soil conditions had strong correlation with both total bacterial and diazotroph assemblages, but in different ways. Nitrogen treatments showed no significant effect on the composition of diazotroph assemblages in most sites. Endophytic compartments of different M. × giganteus plants tended to harbor similar microbial communities across all sites, whereas the rhizosphere soil of different plant tended to harbor diverse microbial assemblages that were distinct among sites. These observations offer insight into better understanding of the associative interactions between M. × giganteus and diazotrophs, and how this relationship is influenced by agronomic and edaphic factors.« less

Age and Date for Early Arrival of the Acheulian in Europe (Barranc de la Boella, la Canonja, Spain)

PubMed Central

Vallverdú, Josep; Saladié, Palmira; Rosas, Antonio; Huguet, Rosa; Cáceres, Isabel; Mosquera, Marina; Garcia-Tabernero, Antonio; Estalrrich, Almudena; Lozano-Fernández, Iván; Pineda-Alcalá, Antonio; Carrancho, Ángel; Villalaín, Juan José; Bourlès, Didier; Braucher, Régis; Lebatard, Anne; Vilalta, Jaume; Esteban-Nadal, Montserrat; Bennàsar, Maria Lluc; Bastir, Marcus; López-Polín, Lucía; Ollé, Andreu; Vergés, Josep Maria; Ros-Montoya, Sergio; Martínez-Navarro, Bienvenido; García, Ana; Martinell, Jordi; Expósito, Isabel; Burjachs, Francesc; Agustí, Jordi; Carbonell, Eudald

2014-01-01

The first arrivals of hominin populations into Eurasia during the Early Pleistocene are currently considered to have occurred as short and poorly dated biological dispersions. Questions as to the tempo and mode of these early prehistoric settlements have given rise to debates concerning the taxonomic significance of the lithic assemblages, as trace fossils, and the geographical distribution of the technological traditions found in the Lower Palaeolithic record. Here, we report on the Barranc de la Boella site which has yielded a lithic assemblage dating to ∼1 million years ago that includes large cutting tools (LCT). We argue that distinct technological traditions coexisted in the Iberian archaeological repertoires of the late Early Pleistocene age in a similar way to the earliest sub-Saharan African artefact assemblages. These differences between stone tool assemblages may be attributed to the different chronologies of hominin dispersal events. The archaeological record of Barranc de la Boella completes the geographical distribution of LCT assemblages across southern Eurasia during the EMPT (Early-Middle Pleistocene Transition, circa 942 to 641 kyr). Up to now, chronology of the earliest European LCT assemblages is based on the abundant Palaeolithic record found in terrace river sequences which have been dated to the end of the EMPT and later. However, the findings at Barranc de la Boella suggest that early LCT lithic assemblages appeared in the SW of Europe during earlier hominin dispersal episodes before the definitive colonization of temperate Eurasia took place. PMID:25076416

Patterns in reef fish assemblages: Insights from the Chagos Archipelago.

PubMed

Samoilys, Melita; Roche, Ronan; Koldewey, Heather; Turner, John

2018-01-01

Understanding the drivers of variability in the composition of fish assemblages across the Indo-Pacific region is crucial to support coral reef ecosystem resilience. Whilst numerous relationships and feedback mechanisms between the functional roles of coral reef fishes and reef benthic composition have been investigated, certain key groups, such as the herbivores, are widely suggested to maintain reefs in a coral-dominated state. Examining links between fishes and reef benthos is complicated by the interactions between natural processes, disturbance events and anthropogenic impacts, particularly fishing pressure. This study examined fish assemblages and associated benthic variables across five atolls within the Chagos Archipelago, where fishing pressure is largely absent, to better understand these relationships. We found high variability in fish assemblages among atolls and sites across the archipelago, especially for key groups such as a suite of grazer-detritivore surgeonfish, and the parrotfishes which varied in density over 40-fold between sites. Differences in fish assemblages were significantly associated with variable levels of both live and recently dead coral cover and rugosity. We suggest these results reflect differing coral recovery trajectories following coral bleaching events and a strong influence of 'bottom-up' control mechanisms on fish assemblages. Species level analyses revealed that Scarus niger, Acanthurus nigrofuscus and Chlorurus strongylocephalos were key species driving differences in fish assemblage structure. Clarifying the trophic roles of herbivorous and detritivorous reef fishes will require species-level studies, which also examine feeding behaviour, to fully understand their contribution in maintaining reef resilience to climate change and fishing impacts.

Thermal and hydrologic responses to climate change predict marked alterations in boreal stream invertebrate assemblages.

PubMed

Mustonen, Kaisa-Riikka; Mykrä, Heikki; Marttila, Hannu; Sarremejane, Romain; Veijalainen, Noora; Sippel, Kalle; Muotka, Timo; Hawkins, Charles P

2018-06-01

Air temperature at the northernmost latitudes is predicted to increase steeply and precipitation to become more variable by the end of the 21st century, resulting in altered thermal and hydrological regimes. We applied five climate scenarios to predict the future (2070-2100) benthic macroinvertebrate assemblages at 239 near-pristine sites across Finland (ca. 1200 km latitudinal span). We used a multitaxon distribution model with air temperature and modeled daily flow as predictors. As expected, projected air temperature increased the most in northernmost Finland. Predicted taxonomic richness also increased the most in northern Finland, congruent with the predicted northwards shift of many species' distributions. Compositional changes were predicted to be high even without changes in richness, suggesting that species replacement may be the main mechanism causing climate-induced changes in macroinvertebrate assemblages. Northern streams were predicted to lose much of the seasonality of their flow regimes, causing potentially marked changes in stream benthic assemblages. Sites with the highest loss of seasonality were predicted to support future assemblages that deviate most in compositional similarity from the present-day assemblages. Macroinvertebrate assemblages were also predicted to change more in headwaters than in larger streams, as headwaters were particularly sensitive to changes in flow patterns. Our results emphasize the importance of focusing protection and mitigation on headwater streams with high-flow seasonality because of their vulnerability to climate change. © 2018 John Wiley & Sons Ltd.

Three decades of recurrent declines and recoveries in corals belie ongoing change in fish assemblages

NASA Astrophysics Data System (ADS)

Lamy, T.; Galzin, R.; Kulbicki, M.; Lison de Loma, T.; Claudet, J.

2016-03-01

Coral reefs are increasingly being altered by a myriad of anthropogenic activities and natural disturbances. Long-term studies offer unique opportunities to understand how multiple and recurrent disturbances can influence coral reef resilience and long-term dynamics. While the long-term dynamics of coral assemblages have been extensively documented, the long-term dynamics of coral reef fish assemblages have received less attention. Here, we describe the changes in fish assemblages on Tiahura reef, Moorea, from 1979 to 2011. During this 33-yr period, Tiahura was exposed to multiple disturbances (crown-of-thorns seastar outbreaks and cyclones) that caused recurrent declines and recoveries of coral cover and changes in the dominant coral genera. These shifts in coral composition were associated with long-term cascading effects on fish assemblages. The composition and trophic structure of fish assemblages continuously shifted without returning to their initial composition, whereas fish species richness remained stable, albeit with a small increase over time. We detected nonlinear responses of fish density when corals were most degraded. When coral cover dropped below 10 % following a severe crown-of-thorns sea star outbreak, the density of most fish trophic groups sharply decreased. Our study shows that historical contingency may potentially be an important but largely underestimated factor explaining the contemporary structure of reef fish assemblages and suggests that temporal stability in their structure and function should not necessarily be the target of management strategies that aim at increasing or maintaining coral reef resilience.

A study of the trace sulfide mineral assemblages in the Stillwater Complex, Montana, USA

NASA Astrophysics Data System (ADS)

Aird, Hannah M.; Ferguson, Katherine M.; Lehrer, Malia L.; Boudreau, Alan E.

2017-03-01

The sulfide assemblages of the Stillwater Complex away from the well-studied ore zones are composed mainly of variable proportions of pyrrhotite, chalcopyrite, pentlandite, and ±pyrite. Excluding vein assemblages and those affected by greenschist and lower temperature alteration, the majority can be classified into two broad assemblages, defined here as pristine (multiphase, often globular in shape) or volatile-bearing (multiphase, high-temperature, volatile-rich minerals such as biotite, hornblende, or an unmixed calcite-dolomite assemblage). The volatile-bearing assemblages are mainly found within and below the J-M reef, where native copper and sphalerite are also locally present. Pristine sulfides are found throughout the stratigraphy. Both groups can be affected by apparent S loss in the form of pyrite being converted to magnetite and chalcopyrite to a Cu-Fe-oxide (delafossite), with little to no silicate alteration. An upward trend from pentlandite-rich to pyrrhotite-rich to pyrite-rich assemblages is observed in the footwall rocks in upper GN-I, and the same trend repeats from just below the reef and continues into the overlying N-II and GN-II. Modeling suggests that the sulfide Ni in the Peridotite Zone is largely controlled by silicate Ni. When taken together, observations are most readily explained by the remobilization of selected elements by a high-temperature fluid with the apparent loss of S > Cu > Ni. This could concentrate ore metals by vapor refining, eventually producing a platinum group element-enriched sulfide ore zone, such as the J-M reef.

A global database of ant species abundances.

PubMed

Gibb, Heloise; Dunn, Rob R; Sanders, Nathan J; Grossman, Blair F; Photakis, Manoli; Abril, Silvia; Agosti, Donat; Andersen, Alan N; Angulo, Elena; Armbrecht, Inge; Arnan, Xavier; Baccaro, Fabricio B; Bishop, Tom R; Boulay, Raphaël; Brühl, Carsten; Castracani, Cristina; Cerda, Xim; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A; Ellison, Aaron M; Enriquez, Martha L; Fayle, Tom M; Feener, Donald H; Fisher, Brian L; Fisher, Robert N; Fitzpatrick, Matthew C; Gómez, Crisanto; Gotelli, Nicholas J; Gove, Aaron; Grasso, Donato A; Groc, Sarah; Guenard, Benoit; Gunawardene, Nihara; Heterick, Brian; Hoffmann, Benjamin; Janda, Milan; Jenkins, Clinton; Kaspari, Michael; Klimes, Petr; Lach, Lori; Laeger, Thomas; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Luke, Sarah H; Majer, Jonathan; McGlynn, Terrence P; Menke, Sean; Mezger, Dirk; Mori, Alessandra; Moses, Jimmy; Munyai, Thinandavha Caswell; Pacheco, Renata; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M; Resasco, Julian; Retana, Javier; Silva, Rogerio R; Sorger, Magdalena D; Souza, Jorge; Suarez, Andrew; Tista, Melanie; Vasconcelos, Heraldo L; Vonshak, Merav; Weiser, Michael D; Yates, Michelle; Parr, Catherine L

2017-03-01

What forces structure ecological assemblages? A key limitation to general insights about assemblage structure is the availability of data that are collected at a small spatial grain (local assemblages) and a large spatial extent (global coverage). Here, we present published and unpublished data from 51 ,388 ant abundance and occurrence records of more than 2,693 species and 7,953 morphospecies from local assemblages collected at 4,212 locations around the world. Ants were selected because they are diverse and abundant globally, comprise a large fraction of animal biomass in most terrestrial communities, and are key contributors to a range of ecosystem functions. Data were collected between 1949 and 2014, and include, for each geo-referenced sampling site, both the identity of the ants collected and details of sampling design, habitat type, and degree of disturbance. The aim of compiling this data set was to provide comprehensive species abundance data in order to test relationships between assemblage structure and environmental and biogeographic factors. Data were collected using a variety of standardized methods, such as pitfall and Winkler traps, and will be valuable for studies investigating large-scale forces structuring local assemblages. Understanding such relationships is particularly critical under current rates of global change. We encourage authors holding additional data on systematically collected ant assemblages, especially those in dry and cold, and remote areas, to contact us and contribute their data to this growing data set. © 2016 by the Ecological Society of America.

Age and date for early arrival of the Acheulian in Europe (Barranc de la Boella, la Canonja, Spain).

PubMed

Vallverdú, Josep; Saladié, Palmira; Rosas, Antonio; Huguet, Rosa; Cáceres, Isabel; Mosquera, Marina; Garcia-Tabernero, Antonio; Estalrrich, Almudena; Lozano-Fernández, Iván; Pineda-Alcalá, Antonio; Carrancho, Ángel; Villalaín, Juan José; Bourlès, Didier; Braucher, Régis; Lebatard, Anne; Vilalta, Jaume; Esteban-Nadal, Montserrat; Bennàsar, Maria Lluc; Bastir, Marcus; López-Polín, Lucía; Ollé, Andreu; Vergés, Josep Maria; Ros-Montoya, Sergio; Martínez-Navarro, Bienvenido; García, Ana; Martinell, Jordi; Expósito, Isabel; Burjachs, Francesc; Agustí, Jordi; Carbonell, Eudald

2014-01-01

The first arrivals of hominin populations into Eurasia during the Early Pleistocene are currently considered to have occurred as short and poorly dated biological dispersions. Questions as to the tempo and mode of these early prehistoric settlements have given rise to debates concerning the taxonomic significance of the lithic assemblages, as trace fossils, and the geographical distribution of the technological traditions found in the Lower Palaeolithic record. Here, we report on the Barranc de la Boella site which has yielded a lithic assemblage dating to ∼1 million years ago that includes large cutting tools (LCT). We argue that distinct technological traditions coexisted in the Iberian archaeological repertoires of the late Early Pleistocene age in a similar way to the earliest sub-Saharan African artefact assemblages. These differences between stone tool assemblages may be attributed to the different chronologies of hominin dispersal events. The archaeological record of Barranc de la Boella completes the geographical distribution of LCT assemblages across southern Eurasia during the EMPT (Early-Middle Pleistocene Transition, circa 942 to 641 kyr). Up to now, chronology of the earliest European LCT assemblages is based on the abundant Palaeolithic record found in terrace river sequences which have been dated to the end of the EMPT and later. However, the findings at Barranc de la Boella suggest that early LCT lithic assemblages appeared in the SW of Europe during earlier hominin dispersal episodes before the definitive colonization of temperate Eurasia took place.

Effects of environmental and water quality parameters on the functioning of copepod assemblages in tropical estuaries

NASA Astrophysics Data System (ADS)

Araujo, Adriana V.; Dias, Cristina O.; Bonecker, Sérgio L. C.

2017-07-01

We examined changes in the functioning of copepod assemblages with increasing pollution in estuaries, using sampling standardization of the salinity range to enable comparisons. Copepod assemblages were analyzed in four southeast Brazilian estuaries with different water quality levels and hydrodynamic characteristics over two years. We obtained mesozooplankton samples together with environmental and water quality parameters in the estuaries, every two months under predetermined salinities ranging from 15 to 25. The values of parameters, except species size, associated with the functioning of the copepod assemblages (biomass, productivity, and turnover rate) did not differ among estuaries. However, in the more polluted estuaries, the biomass and productivity of copepod assemblages of mesozooplankton were negatively correlated with concentration of pollution indicator parameters. Conversely, in the less polluted estuaries some degree of enrichment still seems to increase the system biomass and productivity, as these parameters were inversely related to indicators of improved water quality. The pollution level of estuaries distorted the relationship between temperature and the efficiency of converting energy to organic matter. In the less polluted estuaries, the relationship between turnover rate and temperature was over 70%, while in the most polluted estuaries, this relationship was only approximately 50%. Our results demonstrated that the functioning of assemblages in the estuaries was affected differently by increasing pollution depending on the water quality level of the system. Thus, investigating the functioning of assemblages can be a useful tool for the analysis of estuarine conditions.

A history of forensic anthropology.

PubMed

Ubelaker, Douglas H

2018-04-01

Forensic anthropology represents a dynamic and rapidly evolving complex discipline within anthropology and forensic science. Academic roots extend back to early European anatomists but development coalesced in the Americas through high-profile court testimony, assemblage of documented collections and focused research. Formation of the anthropology section of the American Academy of Forensic Sciences in 1972, the American Board of Forensic Anthropology in 1977/1978 and other organizational advances provided important stimuli for progress. While early pioneers concentrated on analysis of skeletonized human remains, applications today have expanded to include complex methods of search and recovery, the biomechanics of trauma interpretation, isotopic analysis related to diet and region of origin, age estimation of the living and issues related to humanitarian and human rights investigations. © 2018 Wiley Periodicals, Inc.

Lattice based Kinetic Monte Carlo Simulations of a complex chemical reaction network

NASA Astrophysics Data System (ADS)

Danielson, Thomas; Savara, Aditya; Hin, Celine

Lattice Kinetic Monte Carlo (KMC) simulations offer a powerful alternative to using ordinary differential equations for the simulation of complex chemical reaction networks. Lattice KMC provides the ability to account for local spatial configurations of species in the reaction network, resulting in a more detailed description of the reaction pathway. In KMC simulations with a large number of reactions, the range of transition probabilities can span many orders of magnitude, creating subsets of processes that occur more frequently or more rarely. Consequently, processes that have a high probability of occurring may be selected repeatedly without actually progressing the system (i.e. the forward and reverse process for the same reaction). In order to avoid the repeated occurrence of fast frivolous processes, it is necessary to throttle the transition probabilities in such a way that avoids altering the overall selectivity. Likewise, as the reaction progresses, new frequently occurring species and reactions may be introduced, making a dynamic throttling algorithm a necessity. We present a dynamic steady-state detection scheme with the goal of accurately throttling rate constants in order to optimize the KMC run time without compromising the selectivity of the reaction network. The algorithm has been applied to a large catalytic chemical reaction network, specifically that of methanol oxidative dehydrogenation, as well as additional pathways on CeO2(111) resulting in formaldehyde, CO, methanol, CO2, H2 and H2O as gas products.

Breeding bird assemblages of hurricane-created gaps and adjacent closed canopy forest in the Southern Appalachians

Treesearch

Cathryn H. Greenberg; J. Drew Lanham

2001-01-01

We studied breeding bird assemblages in forest gaps created in 1995 by Hurricane Opal at the Bent Creek Experimental Forest in Asheville, NC. We hypothesized that forest gaps and adjacent closed-canopy forest would differ in bird density, richness, diversity, and relative abundances of some species. To test this hypothesis we censused breeding bird assemblages for 2...

Responses of turtle assemblage to environmental gradients in the St. Croix River in Minnesota and Wisconsin, U.S.A.

Treesearch

Deahn DonnerWright; Michael A. Bozek; John R. Probst; Eric M. Anderson

1999-01-01

We investigated how environmental gradients measured along the St. Croix River in Minnesota and Wisconsin, U.S.A., influenced the turtle assemblage. Among seven species, the five most common species were generalists and had wide distributions throughout the study area. However, patterns in assemblage structure were related to environmental gradients along the river....

Bacterial assemblages of the eastern Atlantic Ocean reveal both vertical and latitudinal biogeographic signatures

NASA Astrophysics Data System (ADS)

Friedline, C. J.; Franklin, R. B.; McCallister, S. L.; Rivera, M. C.

2012-06-01

Microbial communities are recognized as major drivers of the biogeochemical processes in the oceans. However, the genetic diversity and composition of those communities is poorly understood. The aim of this study is to investigate the composition of bacterial assemblages in three different water layer habitats: surface (2-20 m), deep chlorophyll maximum (DCM; 28-90 m), and deep (100-4600 m) at nine stations along the eastern Atlantic Ocean from 42.8° N to 23.7° S. The sampling of three discrete, predefined habitat types from different depths, Longhurstian provinces, and geographical locations allowed us to investigate whether marine bacterial assemblages show spatial variation and to determine if the observed spatial variation is influenced by current environmental conditions, historical/geographical contingencies, or both. The PCR amplicons of the V6 region of the 16S rRNA from 16 microbial assemblages were pyrosequenced, generating a total of 352 029 sequences; after quality filtering and processing, 257 260 sequences were clustered into 2871 normalized operational taxonomic units (OTU) using a definition of 97% sequence identity. Community ecology statistical analyses demonstrate that the eastern Atlantic Ocean bacterial assemblages are vertically stratified and associated with water layers characterized by unique environmental signals (e.g., temperature, salinity, and nutrients). Genetic compositions of bacterial assemblages from the same water layer are more similar to each other than to assemblages from different water layers. The observed clustering of samples by water layer allows us to conclude that contemporary environments are influencing the observed biogeographic patterns. Moreover, the implementation of a novel Bayesian inference approach that allows a more efficient and explicit use of all the OTU abundance data shows a distance effect suggesting the influence of historical contingencies on the composition of bacterial assemblages. Surface bacterial communities displayed a general congruency with the ecological provinces as defined by Longhurst with modest exceptions usually associated with unique hydrographic and biogeochemical features. Collectively, our findings suggest that vertical (habitat) and latitudinal (distance) biogeographic signatures are present and that both environmental parameters and ecological provinces drive the composition of bacterial assemblages in the eastern Atlantic Ocean.

Assessing the use of existing data to compare plains fish assemblages collected from random and fixed sites in Colorado

USGS Publications Warehouse

Zuellig, Robert E.; Crockett, Harry J.

2013-01-01

The U.S. Geological Survey, in cooperation with Colorado Parks and Wildlife, assessed the potential use of combining recently (2007 to 2010) and formerly (1992 to 1996) collected data to compare plains fish assemblages sampled from random and fixed sites located in the South Platte and Arkansas River Basins in Colorado. The first step was to determine if fish assemblages collected between 1992 and 1996 were comparable to samples collected at the same sites between 2007 and 2010. If samples from the two time periods were comparable, then it was considered reasonable that the combined time-period data could be used to make comparisons between random and fixed sites. In contrast, if differences were found between the two time periods, then it was considered unreasonable to use these data to make comparisons between random and fixed sites. One-hundred samples collected during the 1990s and 2000s from 50 sites dispersed among 19 streams in both basins were compiled from a database maintained by Colorado Parks and Wildlife. Nonparametric multivariate two-way analysis of similarities was used to test for fish-assemblage differences between time periods while accounting for stream-to-stream differences. Results indicated relatively weak but significant time-period differences in fish assemblages. Weak time-period differences in this case possibly were related to changes in fish assemblages associated with environmental factors; however, it is difficult to separate other possible explanations such as limited replication of paired time-period samples in many of the streams or perhaps differences in sampling efficiency and effort between the time periods. Regardless, using the 1990s data to fill data gaps to compare random and fixed-site fish-assemblage data is ill advised based on the significant separation in fish assemblages between time periods and the inability to determine conclusive explanations for these results. These findings indicated that additional sampling will be necessary before unbiased comparisons can be made between fish assemblages collected from random and fixed sites in the South Platte and Arkansas River Basins.

[Effects of different soil and water loss control measures on the dung beetle assemblages in Huangfuchuan watershed, Inner Mongolia of North China].

PubMed

Liu, Wei; Wang, Run-Run; Liu, Xin-Min

2013-03-01

By using pitfall trap method, and taking the croplands and natural grasslands under different soil and water loss control measures as sampling plots, an investigation was conducted on the dung beetle assemblages in the Huangfuchuan watershed of Inner Mongolia from September 2007 to September 2008, aimed to understand the effects of different soil and water loss control measures on the dung beetle assemblages in the watershed. A total of 6169 dung beetles were captured, belonging to 15 species, 5 genus, and 2 families. The dominant species were Aphodius rectus and Onthophagus gibbulus, accounting for 66. 54% and 13. 26% of the total captured beetles, respectively. A lack of the species suitable for living in woodland habitats was the basic feature of the dung beetle assemblages. As compared with the control, all test soil and water loss control measures did not cause an obvious increase of species richness, biomass, and abundance of the dung beetle assemblages. The biomass and species richness of the assemblages as well as the abundance of the functional groups II and III had a significant negative correlation with the average tree (grass) height. Under the effects of long-term agricultural cultivation and the lack of large herbivores, the species richness and abundance of the functional group I (larger paracoprids and telocoprids) were lower than those of the functional groups II (relatively smaller paracoprids) and II (endocoprids), the main components of the dung beetle assemblages in the watershed. The faeces of the residents and livestock in the study region provided abundant foods for the dung beetle assemblages, inducing the relatively high abundance and spices richness of the assemblages occurred in the croplands nearby the villages. Our results suggested that natural grasslands were the suitable habitats for the dung beetles in Huangfuchuan watershed. At regional scale, to popularize the successful experiences of comprehensive soil and water loss control, preserve natural grasslands, and feed appropriate number of livestock (especially larger herbivores) could be the effective approaches for maintaining the diversity of dung beetles and the ecosystem functions.

Prevalence and Genetic Diversity of Giardia duodenalis and Cryptosporidium spp. among School Children in a Rural Area of the Amhara Region, North-West Ethiopia

PubMed Central

de Lucio, Aida; Amor-Aramendía, Aranzazu; Bailo, Begoña; Saugar, José M.; Anegagrie, Melaku; Arroyo, Ana; López-Quintana, Beatriz; Zewdie, Derjew; Ayehubizu, Zimmam; Yizengaw, Endalew; Abera, Bayeh; Yimer, Mulat; Mulu, Wondemagen; Hailu, Tadesse; Herrador, Zaida; Fuentes, Isabel; Carmena, David

2016-01-01

Backgroud Giardia duodenalis and Cryptosporidium spp. are enteric protozoan causing gastrointestinal illness in humans and animals. Giardiasis and cryptosporidiosis are not formally considered as neglected tropical diseases, but belong to the group of poverty-related infectious diseases that impair the development and socio-economic potential of infected individuals in developing countries. Methods We report here the prevalence and genetic diversity of G. duodenalis and Cryptosporidium spp. in children attending rural primary schools in the Bahir Dar district of the Amhara Region, Ethiopia. Stool samples were collected from 393 children and analysed by molecular methods. G. duodenalis was detected by real-time PCR, and the assemblages and sub-assemblages were determined by multilocus sequence-based genotyping of the glutamate dehydrogenase and β-giardin genes of the parasite. Detection and identification of Cryptosporidium species was carried out by sequencing of a partial fragment of the small-subunit ribosomal RNA gene. Principal Findings The PCR-based prevalences of G. duodenalis and Cryptosporidium spp. were 55.0% (216/393) and 4.6% (18/393), respectively. A total of 78 G. duodenalis isolates were successfully characterized, revealing the presence of sub-assemblages AII (10.3%), BIII (28.2%), and BIV (32.0%). Discordant typing results AII/AIII and BIII/BIV were identified in 7.7% and 15.4% of the isolates, respectively. An additional five (6.4%) isolates were assigned to assemblage B. No mixed infections of assemblages A+B were found. Extensive genetic variation at the nucleotide level was observed within assemblage B (but no within assemblage A), resulting in the identification of a large number of sub-types. Cryptosporidium diversity was demonstrated by the occurrence of C. hominis, C. parvum, and C. viatorum in the population under study. Conclusions Our data suggest an epidemiological scenario with an elevated transmission intensity of a wide range of G. duodenalis genetic variants. Importantly, the elevated degree of genetic diversity observed within assemblage B is consistent with the occurrence of intra-assemblage recombination in G. duodenalis. PMID:27466809

Geothermobarometry for ultramafic assemblages from the Emeishan Large Igneous Province, Southwest China and the Nikos and Zulu Kimberlites, Nunavut, Canada

NASA Astrophysics Data System (ADS)

Zhao, D.

2009-05-01

To understand and contrast the origins of ultramafic assemblages from basaltic and kimberlitic rocks and their associated deposits, such as V-Ti magnetite and Ni-Cu-(PGE) sulfide deposits and diamond, applicable thermobarometers were evaluated and applied to the ultramafic assemblages from the Emeishan Large Igneous Province (ELIP), Southwest China and from the Nikos and Zulu Kimberlites of Nunavut, Canada. The ELIP is located in the Yangtze Block, Southwest China and composed of Permian Emeishan Flood basalt (EFB) and associated layered mafic-ultramafic intrusions. Some of these intrusions host V-Ti magnetite deposits; while others contain Ni-Cu-(PGE) sulfide deposits. It is not clear why some intrusions host magnetite deposits and others contain sulfide deposits. The P-T conditions for the ultramafic assemblages from the mafic-ultramafic intrusions in the ELIP were calculated in order to understand the origins and the associated mineral deposits. The ultramafic assemblages are peridotite, olivine pyroxenite, pyroxenite in the layered intrusions and the common minerals include spinel, olivine, clinopyroxene, orthopyroxene, and minor magnetite and ilmenite. Using a two pyroxene thermometer and a Ca-Mg exchange barometer between olivine and clinopyroxene, a spinel-olivine-clinopyroxene-orthopyroxene assemblage from the Xinjie intrusion yields a T-P of 905°C and 17 kbar; and a similar assemblage from the Jinbaoshan intrusion yields a T-P of 1124°C and 31 kbar. The Nikos kimberlite, near Elwin Bay on Somerset Island, is located at the northeast end of the northeast-southwest kimberlite zone; and the Zulu kimberlite is located on the neighboring Brodeur Peninsula of Baffin Island, Nunavut. The ultramafic assemblages from the Canadian Kimberlites include garnet lherzolite, garnet-spinel lherzolite, spinel lherzolite, dunite, garnet websterite, spinel websterite and garnet clinopyroxenite. The calculated P-T conditions are in the range of 760 to 1180°C and 25 to 60 kbar, follow a continental geotherm, and overlap the stability field of diamond. The ultramafic assemblages from the ELIP, Southwest China and from the Canadian Kimberlites were sampled from different depths in the lithosphere.

Total assemblages of benthic foraminifera from a mixed siliciclastic/carbonate inner shelf; preliminary results from the bays of Soline and Nin (Adriatic Sea, Croatia)

NASA Astrophysics Data System (ADS)

Vidović, J.; Ćosović, V.; Juračić, M.; Benac, Č.

2012-04-01

Eastern Adriatic shelf is mixed siliciclastic/carbonate area with a great proportion of carbonate biogenous production. This study presents analysis and comparison of total benthic foraminiferal assemblages (their composition, diversity and distribution) in surface sediments from two Eastern Adriatic shallow water bays (Soline and Nin Bay), sampled seasonally from 2006 to 2008. In order to characterize the carbonate sediment production, 62 samples along the bathymetric profiles (from 2 to 20 m) were collected by scuba diving with short PVC corers. Granulometrical analysis was done using method of wet sieving. Statistical analyses (cluster analysis, PCA) were performed using Past program. The most abundant biogenous components in different sediments from Soline Bay (muddy sandy gravel and mud) are foraminifera, followed by fragments of mollusks, gastropods, bryozoans and sea urchins. Foraminiferal assemblages are high diversified as confirmed by Shannon-Wiener index varying from 2.14 to 3.39, Fisher α index from 5.74 to 16.30 and Equitability from 0.32 to 0.72. The shallowest part of the bay is covered with the sand, consisted of high proportion of siliciclastic component and impoverished in biogenous remnants. Foraminiferal assemblages have low diversity (Shannon-Wiener index 1.36, Fisher α index 2.31 and Equitability 0.32). Throughout Nin Bay, sediments (classified as sand, muddy sand and mud) are consisted of various biogenic remnants. Foraminiferal assemblages have high biodiversity, with Shannon-Wiener index varying from 2.51 to 3.20, α-Fisher index from 7.84 to 12.64 and Equitability from 0.37 to 0.77. Statistical analyses (cluster analysis and PCA) grouped foraminifera in two major assemblages, related to sediment type. On sandy and gravely substrates, assemblage is dominated by epifaunal genera and species: Quinqueloculina sp. (6-20%), Elphidium sp. (5-16%), Neoconorbina terquemi (6-10 %) and Asterigerinata mamilla (5-7%). Infaunal species, Ammonia beccarii (5-16%), Ammonia inflata (5-36%), Ammonia tepida (6-38%) and genus Haynesina sp. (6-31%) dominate assemblages in muddy sediments. The only reworked species Aubignyna planidorso is found in the shallowest part of Soline Bay, making 20 to 65% of the assemblage.

Long-term stability of tidal and diel-related patterns in mangrove creek fish assemblages in North Brazil

NASA Astrophysics Data System (ADS)

Castellanos-Galindo, G. A.; Krumme, U.

2014-08-01

Intertidal fish assemblages are thought to respond to tidal and diel rhythms although the assumption that these patterns are stable over long time scales (>1 year) is largely untested. Testing the validity of this assumption is necessary to assess whether short-term temporal patterns, once established, can be extrapolated over time and give a better understanding of the temporal dynamics of fish assemblages in coastal habitats. Here, we compare the fish assemblage structure from two intertidal mangrove creeks in North Brazil (Bragança Peninsula, Caeté estuary) sampled with the same sampling methodology (block nets), effort (two lunar cycles) and design (accounting for the combination of tidal and diel cycle) in the rainy seasons of 1999 and 2012 to evaluate the persistence, stability and recurrence of short-term patterns in the fish community organization. The interaction of tidal and diel cycles (inundations at spring tide-night, spring tide-day, neap tide-night, neap tide-day), found to be stable after 13 years, resulted in recurrent and stable intertidal mangrove fish assemblage compositions. The intertidal mangrove creek fish assemblage consisted of a persistent number of dominant species (seven). However, there were notable changes in fish catch mass, abundance and species dominance between 1999 and 2012. The most severe drought in North Brazil in 30 years, linked to lower precipitation and river runoff in the rainy season of 2012, may have resulted in (1) lower abundance of small juveniles of several dominant species in this assemblage (especially Ariidae - Cathorops agassizii and Sciades herzbergii) and (2) increased dominance of large-sized specimens of the tetraodontid Colomesus psittacus. Our findings highlight: (1) the overriding importance and stability of the interactive pulse of the tidal and diel cycles in determining short-term temporal patterns in intertidal mangrove fish assemblages in neotropical macrotidal estuaries despite the occurrence of extreme events (i.e. major decrease in rainfall) and (2) the large-scale influence that these extreme events can exert on recruitment processes in tropical estuarine fish assemblages.

Adjustment modes in the trajectory of progressive multiple sclerosis: a qualitative study and conceptual model.

PubMed

Bogosian, Angeliki; Morgan, Myfanwy; Bishop, Felicity L; Day, Fern; Moss-Morris, Rona

2017-03-01

We examined cognitive and behavioural challenges and adaptations for people with progressive multiple sclerosis (MS) and developed a preliminary conceptual model of changes in adjustment over time. Using theoretical sampling, 34 semi-structured interviews were conducted with people with MS. Participants were between 41 and 77 years of age. Thirteen were diagnosed with primary progressive MS and 21 with secondary progressive MS. Data were analysed using a grounded theory approach. Participants described initially bracketing the illness off and carrying on their usual activities but this became problematic as the condition progressed and they employed different adjustment modes to cope with increased disabilities. Some scaled back their activities to live a more comfortable life, others identified new activities or adapted old ones, whereas at times, people disengaged from the adjustment process altogether and resigned to their condition. Relationships with partners, emotional reactions, environment and perception of the environment influenced adjustment, while people were often flexible and shifted among modes. Adjusting to a progressive condition is a fluid process. Future interventions can be tailored to address modifiable factors at different stages of the condition and may involve addressing emotional reactions concealing/revealing the condition and perceptions of the environment.

Physics Division annual review, 1 April 1980-31 March 1981

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1982-06-01

Progress in nuclear physics research is reported in the following areas: medium-energy physics (pion reaction mechanisms, high-resolution studies and nuclear structure, and two-nucleon physics with pions and electrons); heavy-ion research at the tandem and superconducting linear accelerator (resonant structure in heavy-ion reactions, fusion cross sections, high angular momentum states in nuclei, and reaction mechanisms and distributions of reaction strengths); charged-particle research; neutron and photonuclear physics; theoretical physics (heavy-ion direct-reaction theory, nuclear shell theory and nuclear structure, nuclear matter and nuclear forces, intermediate-energy physics, microscopic calculations of high-energy collisions of heavy ions, and light ion direct reactions); the superconducting linac; acceleratormore » operations; and GeV electron linac. Progress in atomic and molecular physics research is reported in the following areas: dissociation and other interactions of energetic molecular ions in solid and gaseous targets, beam-foil research and collision dynamics of heavy ions, photoionization- photoelectron research, high-resolution laser rf spectroscopy with atomic and molecular beams, moessbauer effect research, and theoretical atomic physics. Studies on interactions of energetic particles with solids are also described. Publications are listed. (WHK)« less

The stability of lawsonite and zoisite at high pressures: Experiments in CASH to 92 kbar and implications for the presence of hydrous phases in subducted lithosphere

NASA Astrophysics Data System (ADS)

Schmidt, Max W.; Poli, Stefano

1994-06-01

The breakdown reactions of lawsonite in SiO2 + H2O- and in Al2O3 + H2O-saturated synthetic CASH systems were examined between 17 and 92 kbar in both forward and reversed experiments. Lawsonite is stable to 565 C at 20 kbar, 760 C at 40 kbar, and 980 C at 65 kbar. In this pressure range lawsonite breaks down to zoisite + kyanite + quartz/ coesite + H2O. An invariant point occurs at 1000 C, 67 kbar. At higher pressures lawsonite breaks down to the assemblage grossular + kyanite + coesite + H20. The steep positive dP/dT slope of this higher pressure breakdown reaction becomes steeply negative when coesite transforms to stishovite. At 92 kbar, the highest pressure investigated, lawsonite is stable to 1040 C. The invariant point marks also the pressure stability limit of zoisite since zoisite reacts to lawsonite + grossular + kyanite + coesite (at temperatures below 1000 C), to grossular + kyanite + coesite + H2O (1000-1040 C) and to grossular + kyanite + melt + H20 (above 1040C). These three reactions have a flat Clapeyron slope, and they locate the maximum pressure stability of zoisite between 65 and 68 kbar (between 800 and 1200 C). Eutectic melting in the SiO2 + H2O-saturated CASH system occurs for the assemblage zoisite + kyanite + coesite + H2O at temperatures approximately 100 C (at 40 kbar) to 40 C (at 65 kbar) higher than the lawsonite breakdown reaction. In the Al2O3+H2O-saturated system the reaction lawsonite + diaspore/corundum = zoisite + kyanite + H2O limits the stability of lawsonite. The diaspore = corundum + H2O equilibrium is found to be located about 50 C lower than predicted by previous studies. The equilibrium boundaries of the reactions between 17 and 38 kbar from both SiO2+H2O- and Al2O3 + H2O-saturated chemical systems were used to improve the thermochemical data on lawsonite. Two sets of thermodynamic properties internally consistent with the databases of both Berman and Holland and Powell, and also consistent with most previous experimental studies, were calculated employing the technique of linear programming (for Berman's data) and a least-squares fit procedure (for Holland and Powell's data). Because lawsonite is stable to 1040 C at 92 kbar, a temperature far higher than predicted by thermal modelling of subduction zones, it is expected to be stable in metabasalts and intermediate compositions (e.g., andesites and greywackes) subducted to depths exceeding 300 km. Lawsonite contains 11 wt% water in its structure, and is thus capable of transporting water deep into the mantle. Its breakdown would contribute significantly to the fluid budget of the slab and overlying mantle wedge. The experimental data in combination with thermal modelling studies indicate that a complete dehydration of the descending oceanic crust is unlikely to occur at shallow levels.

Oxygen-isotope composition of ground water and secondary minerals in Columbia Plateau basalts: implications for the paleohydrology of the Pasco Basin

USGS Publications Warehouse

Hearn, P.P.; Steinkampf, W.C.; Horton, D.G.; Solomon, G.C.; White, L.D.; Evans, J.R.

1989-01-01

Concentrations of 18O and deuterium in ground waters beneath the Hanford Reservation, Washington State, suggest that the meteoric waters recharging the basalt aquifers have been progressively depleted in these isotopes since at least Pleistocene time. This conclusion is supported by oxygen-isotope analyses of low-temperature secondary minerals filling vugs and fractures in the basalts, which are used to approximate the 18O content of ground water at the time the mineral assemblage formed. A fossil profile of ??18O values projected for ground water in a 1500 m vertical section beneath the reservation suggests that the vertical mixing of shallow and deep ground water indicated by present-day hydrochemical data was also occurring during Neogene time. These data also suggest that a unidirectional depletion of 18O and deuterium recorded in Pleistocene ground waters may have extended considerably further back in time. This shift is tentatively attributed to the orographic depletion of 18O associated with the progressive uplift of the Cascade Range since the middle Miocene. -Authors

Hudson River Paleoclimate, Sea Level, and Human Impact: A Record From Piermont Marsh, NY

NASA Technical Reports Server (NTRS)

Kurdyla; Peteet, Dorothy; Liberman, Louisa; Sugar; Wong; Hansen, James E. (Technical Monitor)

2001-01-01

A 13.77 meter sediment core from Piermont Marsh, NY (40 00 N, 73 55W) records the local and regional vegetational and foraminiferal history of the Hudson Estuary. The sediments were sampled every 4 cm, which represents a decadal to centuryscale resolution. Basal sediment dating is in progress, and the 11-m depth represents about 4000 years. Changes in plant macrofossils and charcoal appear to indicate differences in salinIty and drought, suggesting changes in climate. Scirpus, Salicornia, and high levels of charcoal seem to indicate drier/more saline conditions, while lack of these macrofossils and increases in Chara/Nitella, aquatic leaves, and very little charcoal suggests wetter conditions. Other macrofossils include Carex, Juncus, Polygonum, Zanichellia, Ruppia. High resolution AMS dating of plant macrofossils is in progress, and will be compared with changes in Hudson River sediment cores offshore. Foraminiferal assemblages from key intervals of the core will be presented. Human impact in the upper sediments is visible from the influx of grass seeds, primarily Phragmites, and the ragweed pollen rise.

Effect of temperature on the hydration of Portland cement blended with siliceous fly ash

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deschner, Florian, E-mail: florian.deschner@gmail.com; Lothenbach, Barbara; Winnefeld, Frank

2013-10-15

The effect of temperature on the hydration of Portland cement pastes blended with 50 wt.% of siliceous fly ash is investigated within a temperature range of 7 to 80 °C. The elevation of temperature accelerates both the hydration of OPC and fly ash. Due to the enhanced pozzolanic reaction of the fly ash, the change of the composition of the C–S–H and the pore solution towards lower Ca and higher Al and Si concentrations is shifted towards earlier hydration times. Above 50 °C, the reaction of fly ash also contributes to the formation of siliceous hydrogarnet. At 80 °C, ettringitemore » and AFm are destabilised and the released sulphate is partially incorporated into the C–S–H. The observed changes of the phase assemblage in dependence of the temperature are confirmed by thermodynamic modelling. The increasingly heterogeneous microstructure at elevated temperatures shows an increased density of the C–S–H and a higher coarse porosity. -- Highlights: •The reaction of quartz powder at 80 °C strongly enhances the compressive strength. •Almost no strength increase of fly ash blended OPC at 80 °C was found after 2 days. •Siliceous hydrogarnet is formed upon the reaction of fly ash at high temperatures. •Temperature dependent change of the system was simulated by thermodynamic modelling. •Destabilisation of ettringite above 50 °C correlates with sulphate content of C–S–H.« less

Metamorphic reactions in ruby corundum amphibolite from the Chunky Gal Mountain mafic-ultramafic complex, Clay County, North Carolina

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ranson, W.A.; Garihan, J.M.; Ulmer, K.E.

1992-01-01

Amphibolite outcrops of unusual mineralogy within the Chunky Gal Mountain mafic-ultramafic complex display cm-scale rhythmic layers with moderate-steep dips. Layers are troctolitic, gabbroic, and anorthositic in composition, locally in contact with dunite of the Buck Creek ultramafic body. Meta-gabbroic layers contain striking bladed, emerald green amphibole as the chief mafic phase and relict bronzite with reacted margins. An additional major phase is plagioclase, [approximately]An 95 based on microprobe analysis. Ruby corundum is a minor (> 5%) constituent, which in some of the gabbroic rocks is mantled by a reaction rim of fibrolite. The clinoamphibole has optical properties resembling magnesio-cummingtonite: colorlessmore » to pale green in plane light with (+) sign and 2V = 60--70[degree]. However, microprobe analysis of the clinoamphibole indicates alumino-magnesio-hornblende. Although the texture of the bronzite shows that it is breaking down, it is clear that the clinoamphibole and corundum could not be the reaction products without the addition of Al, Ca, and Si in an aqueous fluid. Associated meta-troctolitic layers contain plagioclase and coarse, anhedral olivines displaying an inner corona of bladed orthopyroxene, rimmed by symplectite. The granulite facies reactions is: plagioclase + olivine = clinopyroxene + garnet. The mesoscopic-scale proximity of troctolitic and gabbroic rhythmic layers indicates both underwent granulite facies metamorphism. Retrogression to amphibolite grade is apparent only in the gabbroic layers, resulting in assemblages distinguished locally by abundant emerald green clinoamphibole and corundum porphyroblasts rimmed by fibrolite.« less

The Middle Jurassic microflora from El Maghara N° 4 borehole, Northern Sinai, Egypt

NASA Astrophysics Data System (ADS)

Mohsen, Sayed Abdel

The coal bearing formation in El Maghara area, northern Sinai, yielded abundant, diverse and generally well preserved spores, pollen and marine microflora. The palynological analysis of the fine clastic sediments in this formation yielded (71) species related to (44) genera. Three different palynological assemblage zones can be distinguished. The sediments which contain lower and the upper assemblage zones bearing the coal seems, were deposited in non-marine (swamp) environment. In the middle assemblage zone few marine microflora can be identified, indicating a coastal near shore marine environment. Compared with other palynologic data obtained from Egypt and other countries, the three described assemblage zones belong to Middle Jurassic (Bathonian) age.

Gas-path leakage seal for a turbine

DOEpatents

Bagepalli, B.S.; Aksit, M.F.; Farrell, T.R.

1999-08-10

A gas-path leakage seal for generally sealing a gas-path leakage-gap between spaced-apart first and second members of a turbine (such as combustor casing segments of a gas turbine). The seal includes a flexible and generally imperforate metal sheet assemblage having opposing first and second surfaces and two opposing raised edges extending a generally identical distance above and below the surfaces. A first cloth layer assemblage has a thickness generally equal to the previously-defined identical distance and is superimposed on the first surface between the raised edges. A second cloth layer assemblage is generally identical to the first cloth layer assemblage and is superimposed on the second surface between the raised edges. 5 figs.

Gas-path leakage seal for a turbine

DOEpatents

Bagepalli, Bharat Sampathkumaran; Aksit, Mahmut Faruk; Farrell, Thomas Raymond

1999-01-01

A gas-path leakage seal for generally sealing a gas-path leakage-gap between spaced-apart first and second members of a turbine (such as combustor casing segments of a gas turbine). The seal includes a flexible and generally imperforate metal sheet assemblage having opposing first and second surfaces and two opposing raised edges extending a generally identical distance above and below the surfaces. A first cloth layer assemblage has a thickness generally equal to the previously-defined identical distance and is superimposed on the first surface between the raised edges. A second cloth layer assemblage is generally identical to the first cloth layer assemblage and is superimposed on the second surface between the raised edges.

Self-organization in precipitation reactions far from the equilibrium

PubMed Central

Nakouzi, Elias; Steinbock, Oliver

2016-01-01

Far from the thermodynamic equilibrium, many precipitation reactions create complex product structures with fascinating features caused by their unusual origins. Unlike the dissipative patterns in other self-organizing reactions, these features can be permanent, suggesting potential applications in materials science and engineering. We review four distinct classes of precipitation reactions, describe similarities and differences, and discuss related challenges for theoretical studies. These classes are hollow micro- and macrotubes in chemical gardens, polycrystalline silica carbonate aggregates (biomorphs), Liesegang bands, and propagating precipitation-dissolution fronts. In many cases, these systems show intricate structural hierarchies that span from the nanometer scale into the macroscopic world. We summarize recent experimental progress that often involves growth under tightly regulated conditions by means of wet stamping, holographic heating, and controlled electric, magnetic, or pH perturbations. In this research field, progress requires mechanistic insights that cannot be derived from experiments alone. We discuss how mesoscopic aspects of the product structures can be modeled by reaction-transport equations and suggest important targets for future studies that should also include materials features at the nanoscale. PMID:27551688

Current progress in asymmetric Biginelli reaction: an update.

PubMed

Heravi, Majid M; Moradi, Razieh; Mohammadkhani, Leyla; Moradi, Borzou

2018-06-23

The Biginelli reaction, involving a three-component reaction of an aromatic aldehyde, urea and ethyl acetoacetate, has emerged as an extremely useful synthetic tool to organic chemists for the synthesis of 3,4-dihydropyrimidine-2-(1H)-ones and related heterocyclic compounds. In the past decades, the asymmetric variants of this reaction have been at the forefront of investigations in several research groups. In 2013, we highlighted the developments occurred in the asymmetric version of the Biginelli reaction. This review article focuses on the recent developments of asymmetric Biginelli reaction covers the literature going back to 2012.

A Perspective on the Maillard Reaction and the Analysis of Protein Glycation by Mass Spectrometry: Probing the Pathogenesis of Chronic Disease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Qibin; Ames, Jennifer M.; Smith, Richard D.

2008-12-18

The Maillard reaction, starting from the glycation of protein and progressing to the formation of advanced glycation end-products (AGEs), is implicated in the development of complications of diabetes mellitus, as well as in the pathogenesis of cardiovascular, renal, and neurodegenerative diseases. In this perspective review, we provide on overview on the relevance of the Maillard reaction in the pathogenesis of chronic disease and discuss traditional approaches and recent developments in the analysis of glycated proteins by mass spectrometry. We propose that proteomics approaches, particularly bottom-up proteomics, will play a significant role in analyses of clinical samples leading to the identificationmore » of new markers of disease development and progression.« less

Recent progress in the synthesis of thiazolo[3,2-a]pyrimidine compounds

NASA Astrophysics Data System (ADS)

Wu, F. Y.; Luo, Y.; Hu, C. B.

2018-01-01

In this paper, the progress in the synthesis of thiazole[3,2-a]pyrimidine compounds in the field of medicine and pesticide were reviewed. The main synthetic routes include: (i) synthesis of thiazolo[3,2-a]pyrimidines, spiro thiazolo[3,2-a]pyrimidines and pyrazolo[3,4-d]thiazolo[3,2-a]pyrimidines by multicomponent reactions (MCRs). (ii) synthesis of thiazolo[3,2-a]pyrimidines by condensation of pyrimidine-2-thiones, which were obtained by Biginelli reaction between aromatic aldehydes and thiourea, with substituted 2-bromo-1-phenylethanone or chloroacetic acid. (iii) synthesis of pyridothieno-fused thiazolo[3,2-a]pyrimidinones via Pictet-Spengler reaction. (iv) synthesis of pyrido[4,3-d]thiazolo[3,2-a]pyrimidine by reacting 2-aminothiazole with the α, β-unsaturated ketones.

The effect of addition of primary positive salts, complex salt, on the ionic strength and rate constant at various temperatures by reaction kinetics

NASA Astrophysics Data System (ADS)

Kurade, S. S.; Ramteke, A. A.

2018-05-01

In this work, we have investigated the rate of reaction by using ionic strength at different temperatures. The main goal of this experiment is to determine the relation between ionic strength with reaction rate, reaction time and rate constant with temperature. It is observed that the addition of positive salt indicate the increasing ionic strength with increase in run time at various temperatures. Thus the temperature affects the speed of reaction and mechanism by which chemical reaction occurs and time variable plays vital role in the progress of reaction at different temperatures.

Biostratigraphy and foraminiferal Assemblages of the West Siberian Albian

NASA Astrophysics Data System (ADS)

Podobina, V. M.

2017-12-01

New data of the Biostratigraphy and Albian foraminiferal assemblages from the sections of newly drilled wells in the Yamal peninsula have been obtained. This territory is assigned by the author to the Northern palaeobiogeographical district, the southern border of which goes along the latitudinal flow of the Ob River. The most diverse Albian foraminiferal assemblages have been discovered in the section of borehole 50 of the Malyginskaya area as well as in the sections of borehole 124 of the West-Tambeiskaya, boreholes, 201, 205 of the North-Tambeiskaya areas. Somewhat similar Albian foraminiferal assemblages were earlier studied by the author in 10 sections of the boreholes of the Samatlor area in the latitudinal Ob River Region. The Middle Albian assemblage is the most stable and diverse in its specific respect. It was discovered not only in the identified sections in the Yamal wells but also southwards in the earlier explored areas. The Albian foraminiferal species of the Yamal peninsula are illustrated in 5 photos and 1 drawing.

Patterns of fish assemblage structure and habitat use among main- and side-channel environments in the lower Kootenai River, Idaho

USGS Publications Warehouse

Watkins, Carson J.; Stevens, Bryan S.; Quist, Michael C.; Shepard, Bradley B.; Ireland, Susan C.

2015-01-01

The lower Kootenai River, Idaho, was sampled during the summers of 2012 and 2013 to evaluate its fish assemblage structure at seven sites within main- and side-channel habitats where large-scale habitat rehabilitation was undertaken. Understanding the current patterns of fish assemblage structure and their relationships with habitat is important for evaluating the effects of past and future rehabilitation projects on the river. Species-specific habitat associations were modeled, and the variables that best explained the occurrence and relative abundance of fish were identified in order to guide future habitat rehabilitation so that it benefits native species. The results indicated that the side-channel habitats supported higher species richness than the main-channel habitats and that nonnative fishes were closely associated with newly rehabilitated habitats. This research provides valuable insight on the current fish assemblages in the Kootenai River and the assemblage-level responses that may occur as a result of future rehabilitation activities.

Increasing functional modularity with residence time in the co-distribution of native and introduced vascular plants

PubMed Central

Hui, Cang; Richardson, David M.; Pyšek, Petr; Le Roux, Johannes J.; Kučera, Tomáš; Jarošík, Vojtěch

2013-01-01

Species gain membership of regional assemblages by passing through multiple ecological and environmental filters. To capture the potential trajectory of structural changes in regional meta-communities driven by biological invasions, one can categorize species pools into assemblages of different residence times. Older assemblages, having passed through more environmental filters, should become more functionally ordered and structured. Here we calculate the level of compartmentalization (modularity) for three different-aged assemblages (neophytes, introduced after 1500 AD; archaeophytes, introduced before 1500 AD, and natives), including 2,054 species of vascular plants in 302 reserves in central Europe. Older assemblages are more compartmentalized than younger ones, with species composition, phylogenetic structure and habitat characteristics of the modules becoming increasingly distinctive. This sheds light on two mechanisms of how alien species are functionally incorporated into regional species pools: the settling-down hypothesis of diminishing stochasticity with residence time, and the niche-mosaic hypothesis of inlaid neutral modules in regional meta-communities. PMID:24045305

Differences in biological traits composition of benthic assemblages between unimpacted habitats.

PubMed

Bolam, S G; Garcia, C; Eggleton, J; Kenny, A J; Buhl-Mortensen, L; Gonzalez-Mirelis, G; van Kooten, T; Dinesen, G; Hansen, J; Hiddink, J G; Sciberras, M; Smith, C; Papadopoulou, N; Gumus, A; Van Hoey, G; Eigaard, O R; Bastardie, F; Rijnsdorp, A D

2017-05-01

There is an implicit requirement under contemporary policy drivers to understand the characteristics of benthic communities under anthropogenically-unimpacted scenarios. We used a trait-based approach on a large dataset from across the European shelf to determine how functional characteristics of unimpacted benthic assemblages vary between different sedimentary habitats. Assemblages in deep, muddy environments unaffected by anthropogenic disturbance show increased proportions of downward conveyors and surface deposit-feeders, while burrowing, diffusive mixing, scavenging and predation traits assume greater numerical proportions in shallower habitats. Deep, coarser sediments are numerically more dominated by sessile, upward conveyors and suspension feeders. In contrast, unimpacted assemblages of coarse sediments in shallower regions are proportionally dominated by the diffusive mixers, burrowers, scavengers and predators. Finally, assemblages of gravelly sediments exhibit a relatively greater numerical dominance of non-bioturbators and asexual reproducers. These findings may be used to form the basis of ranking habitats along a functional sensitivity gradient. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

Fish composition and assemblage in the anthropogenic-modified tidally-restricted Doñana (Spain) marshlands

NASA Astrophysics Data System (ADS)

Moreno-Valcárcel, Raquel; Oliva-Paterna, Francisco J.; Arribas, Carmen; Fernández-Delgado, Carlos

2013-03-01

The Guadalquivir estuary is the largest estuarine area on the southern Atlantic coast of Europe; its anthropogenic tidally-restricted marshes are partly within the boundary of the Doñana National Park, southern Spain. Our two-year study describes the spatial and temporal patterns of the fish assemblages in the Doñana marshlands in terms of species richness, abundance and biomass. The main families were Mugilidae and Cyprinidae, which accounted for 40.9% of the total species richness. Unlike the fish assemblages found in other European estuaries, Doñana was dominated in both biomass and abundance by freshwater species, mainly invasive exotic species. The spatial analysis of the assemblage showed four significant fish groups corresponding to different habitats established a priori and related to the salinity gradient. Assemblages did not show a seasonal pattern and the temporal fish groups observed were mainly related to the hydrological cycle and the extreme drought that occurred during the study period.

DYNAMICS OF MINERAL STRUCTURES AND THE FATE OF METALS IN SOILS AND SEDIMENTS

EPA Science Inventory

Significant progress has been made in elucidating sorption reactions that control the partitioning of metals from solution to mineral surfaces in contaminated soil/sediment systems. Surface complexation models have been developed to quantify the forward reaction with reasonable ...

REACTION PATHWAY ANALYSIS FOR VINYL RADICAL REACTIONS WITH THE CHLOROETHYLENES. (R826167)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

How Were Southwest Pacific Pelagic Ecosystems Affected by Extreme Global Warming During the Initial Eocene Thermal Maximum?

NASA Astrophysics Data System (ADS)

Hollis, C. J.; Crouch, E. M.; Dickens, G. R.

2004-12-01

Four sections in eastern New Zealand provide the only South Pacific record of the initial Eocene thermal maximum (IETM): a siliciclastic outer shelf section (Tawanui, Hawkes Bay) and three pelagic-hemipelagic sections forming an outer shelf-upper slope transect across a carbonate ramp (Muzzle, Dee and Mead Streams, Clarence Valley). Although the rocks are too indurated to yield reliable oxygen isotope data, the IETM is identified by bulk carbonate carbon isotopes as a sharp negative excursion followed by gradual recovery over 0.6 to 4.0 m. In all sections, the excursion is mirrored by terrigenous sediment concentration, due to reduced biogenic (carbonate and silica) input and increased terrigenous input. Increased precipitation under warm humid conditions appears to have increased terrestrial discharge, recorded by deposition of smectitic marl in pelagic settings and illite/kaolinite-bearing smectitic mudstone in neritic settings. Eutrophic conditions are inferred for the IETM interval at Tawanui based on dysoxia, carbonate dissolution, an acme for the peridinioid dinocyst Apectodinium and abundant Toweius spp in nannofossil assemblages. Continued abundance of Toweius and replacement of Apectodinium by peridinioids of the Deflandrea complex suggests that eutrophic, albeit cooler, conditions persisted for at least 0.5 Ma after the IETM. In contrast, the IETM in Clarence Valley is marked by reduced biogenic silica content but little change in carbonate, and no evidence for carbonate dissolution. Sparse, poorly preserved palynomorphs assemblages suggest organic matter was oxidised under fully oxic conditions. Reduced numbers of upwelling indicators in the siliceous microfossil assemblage and common warm-water planktic foraminifera (Morozovella spp.), nannoplankton (Discoaster spp.) and radiolarians (e.g. Podocyrtis and Theocorys spp.) signal a switch from eutrophic to oligotrophic conditions and significant warming of near-surface waters. A progressive increase in neritic symbiotrophes within the radiolarian assemblage during the IETM recovery phase suggests warm, stratified, oligotrophic oceanic conditions. Radiolarians are scarce and upwelling indicators are very rare in sediments overlying the IETM. In the Southwest Pacific, global warming during the IETM increased terrestrial discharge, which enhanced productivity in shallow marine environments. Reduced productivity in deeper marine settings may have been caused by the poleward expansion of oligotrophic subtropical surface waters, impinging on a southern cyclonic system that had promoted upwelling along the eastern New Zealand margin through the Paleocene. Little evidence is found for local plankton productivity having a role in the gradual decrease in global temperatures that defines the upper IETM.

Deeply subducted continental fragments - Part 1: Fracturing, dissolution-precipitation, and diffusion processes recorded by garnet textures of the central Sesia Zone (western Italian Alps)

NASA Astrophysics Data System (ADS)

Giuntoli, Francesco; Lanari, Pierre; Engi, Martin

2018-02-01

Contiguous continental high-pressure terranes in orogens offer insight into deep recycling and transformation processes that occur in subduction zones. These remain poorly understood, and currently debated ideas need testing. The approach we chose is to investigate, in detail, the record in suitable rock samples that preserve textures and robust mineral assemblages that withstood overprinting during exhumation. We document complex garnet zoning in eclogitic mica schists from the Sesia Zone (western Italian Alps). These retain evidence of two orogenic cycles and provide detailed insight into resorption, growth, and diffusion processes induced by fluid pulses in high-pressure conditions. We analysed local textures and garnet compositional patterns, which turned out remarkably complex. By combining these with thermodynamic modelling, we could unravel and quantify repeated fluid-rock interaction processes. Garnet shows low-Ca porphyroclastic cores that were stable under (Permian) granulite facies conditions. The series of rims that surround these cores provide insight into the subsequent evolution: the first garnet rim that surrounds the pre-Alpine granulite facies core in one sample indicates that pre-Alpine amphibolite facies metamorphism followed the granulite facies event. In all samples documented, cores show lobate edges and preserve inner fractures, which are sealed by high-Ca garnet that reflects high-pressure Alpine conditions. These observations suggest that during early stages of subduction, before hydration of the granulites, brittle failure of garnet occurred, indicating high strain rates that may be due to seismic failure. Several Alpine rims show conspicuous textures indicative of interaction with hydrous fluid: (a) resorption-dominated textures produced lobate edges, at the expense of the outer part of the granulite core; (b) peninsulas and atoll garnet are the result of replacement reactions; and (c) spatially limited resorption and enhanced transport of elements due to the fluid phase are evident along brittle fractures and in their immediate proximity. Thermodynamic modelling shows that all of these Alpine rims formed under eclogite facies conditions. Structurally controlled samples allow these fluid-garnet interaction phenomena to be traced across a portion of the Sesia Zone, with a general decrease in fluid-garnet interaction observed towards the external, structurally lower parts of the terrane. Replacement of the Permian HT assemblages by hydrate-rich Alpine assemblages can reach nearly 100 % of the rock volume. Since we found no clear relationship between discrete deformation structures (e.g. shear zones) observed in the field and the fluid pulses that triggered the transformation to eclogite facies assemblages, we conclude that disperse fluid flow was responsible for the hydration.

Assemblage composition of fungal wood-decay species has a major influence on how climate and wood quality modify decomposition.

PubMed

Venugopal, Parvathy; Junninen, Kaisa; Edman, Mattias; Kouki, Jari

2017-03-01

The interactions among saprotrophic fungal species, as well as their interactions with environmental factors, may have a major influence on wood decay and carbon release in ecosystems. We studied the effect that decomposer diversity (species richness and assemblage composition) has on wood decomposition when the climatic variables and substrate quality vary simultaneously. We used two temperatures (16 and 21°C) and two humidity levels (70% and 90%) with two wood qualities (wood from managed and old-growth forests) of Pinus sylvestris. In a 9-month experiment, the effects of fungal diversity were tested using four wood-decaying fungi (Antrodia xantha, Dichomitus squalens, Fomitopsis pinicola and Gloeophyllum protractum) at assemblage levels of one, two and four species. Wood quality and assemblage composition affected the influence of climatic factors on decomposition rates. Fungal assemblage composition was found to be more important than fungal species richness, indicating that species-specific fungal traits are of paramount importance in driving decomposition. We conclude that models containing fungal wood-decay species (and wood-based carbon) need to take into account species-specific and assemblage composition-specific properties to improve predictive capacity in regard to decomposition-related carbon dynamics. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Macroalgal Composition Determines the Structure of Benthic Assemblages Colonizing Fragmented Habitats.

PubMed

Matias, Miguel G; Arenas, Francisco; Rubal, Marcos; Pinto, Isabel S

2015-01-01

Understanding the consequences of fragmentation of coastal habitats is an important topic of discussion in marine ecology. Research on the effects of fragmentation has revealed complex and context-dependent biotic responses, which prevent generalizations across different habitats or study organisms. The effects of fragmentation in marine environments have been rarely investigated across heterogeneous habitats, since most studies have focused on a single type of habitat or patch. In this study, we assessed the effects of different levels of fragmentation (i.e. decreasing size of patches without overall habitat loss). We measured these effects using assemblages of macro-invertebrates colonizing representative morphological groups of intertidal macroalgae (e.g. encrusting, turf and canopy-forming algae). For this purpose, we constructed artificial assemblages with different combinations of morphological groups and increasing levels of fragmentation by manipulating the amount of bare rock or the spatial arrangement of different species in mixed assemblages. In general, our results showed that 1) fragmentation did not significantly affect the assemblages of macroinvertebrates; 2) at greater levels of fragmentation, there were greater numbers of species in mixed algal assemblages, suggesting that higher habitat complexity promotes species colonization. Our results suggest that predicting the consequences of fragmentation in heterogeneous habitats is dependent on the type and diversity of morphological groups making up those habitats.

Unusual Deep Water sponge assemblage in South China—Witness of the end-Ordovician mass extinction

NASA Astrophysics Data System (ADS)

Li, Lixia; Feng, Hongzhen; Janussen, Dorte; Reitner, Joachim

2015-11-01

There are few sponges known from the end-Ordovician to early-Silurian strata all over the world, and no records of sponge fossils have been found yet in China during this interval. Here we report a unique sponge assemblage spanning the interval of the end-Ordovician mass extinction from the Kaochiapien Formation (Upper Ordovician-Lower Silurian) in South China. This assemblage contains a variety of well-preserved siliceous sponges, including both Burgess Shale-type and modern type taxa. It is clear that this assemblage developed in deep water, low energy ecosystem with less competitors and more vacant niches. Its explosion may be related to the euxinic and anoxic condition as well as the noticeable transgression during the end-Ordovician mass extinction. The excellent preservation of this assemblage is probably due to the rapid burial by mud turbidites. This unusual sponge assemblage provides a link between the Burgess Shale-type deep water sponges and the modern forms. It gives an excellent insight into the deep sea palaeoecology and the macroevolution of Phanerozoic sponges, and opens a new window to investigate the marine ecosystem before and after the end-Ordovician mass extinction. It also offers potential to search for exceptional fossil biota across the Ordovician-Silurian boundary interval in China.

Unusual Deep Water sponge assemblage in South China—Witness of the end-Ordovician mass extinction

PubMed Central

Li, Lixia; Feng, Hongzhen; Janussen, Dorte; Reitner, Joachim

2015-01-01

There are few sponges known from the end-Ordovician to early-Silurian strata all over the world, and no records of sponge fossils have been found yet in China during this interval. Here we report a unique sponge assemblage spanning the interval of the end-Ordovician mass extinction from the Kaochiapien Formation (Upper Ordovician-Lower Silurian) in South China. This assemblage contains a variety of well-preserved siliceous sponges, including both Burgess Shale-type and modern type taxa. It is clear that this assemblage developed in deep water, low energy ecosystem with less competitors and more vacant niches. Its explosion may be related to the euxinic and anoxic condition as well as the noticeable transgression during the end-Ordovician mass extinction. The excellent preservation of this assemblage is probably due to the rapid burial by mud turbidites. This unusual sponge assemblage provides a link between the Burgess Shale-type deep water sponges and the modern forms. It gives an excellent insight into the deep sea palaeoecology and the macroevolution of Phanerozoic sponges, and opens a new window to investigate the marine ecosystem before and after the end-Ordovician mass extinction. It also offers potential to search for exceptional fossil biota across the Ordovician-Silurian boundary interval in China. PMID:26538179

Unusual Deep Water sponge assemblage in South China-Witness of the end-Ordovician mass extinction.

PubMed

Li, Lixia; Feng, Hongzhen; Janussen, Dorte; Reitner, Joachim

2015-11-05

There are few sponges known from the end-Ordovician to early-Silurian strata all over the world, and no records of sponge fossils have been found yet in China during this interval. Here we report a unique sponge assemblage spanning the interval of the end-Ordovician mass extinction from the Kaochiapien Formation (Upper Ordovician-Lower Silurian) in South China. This assemblage contains a variety of well-preserved siliceous sponges, including both Burgess Shale-type and modern type taxa. It is clear that this assemblage developed in deep water, low energy ecosystem with less competitors and more vacant niches. Its explosion may be related to the euxinic and anoxic condition as well as the noticeable transgression during the end-Ordovician mass extinction. The excellent preservation of this assemblage is probably due to the rapid burial by mud turbidites. This unusual sponge assemblage provides a link between the Burgess Shale-type deep water sponges and the modern forms. It gives an excellent insight into the deep sea palaeoecology and the macroevolution of Phanerozoic sponges, and opens a new window to investigate the marine ecosystem before and after the end-Ordovician mass extinction. It also offers potential to search for exceptional fossil biota across the Ordovician-Silurian boundary interval in China.

Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages

PubMed Central

Strauß, Axel; Guilhaumon, François; Randrianiaina, Roger Daniel; Wollenberg Valero, Katharina C.; Vences, Miguel; Glos, Julian

2016-01-01

Assemblages that are exposed to recurring temporal environmental changes can show changes in their ecological properties. These can be expressed by differences in diversity and assembly rules. Both can be identified using two measures of diversity: functional (FD) and phylogenetic diversity (PD). Frog communities are understudied in this regard, especially during the tadpole life stage. We utilised tadpole assemblages from Madagascan rainforest streams to test predictions of seasonal changes on diversity and assemblage composition and on diversity measures. From the warm-wet to the cool-dry season, species richness (SR) of tadpole assemblages decreased. Also FD and PD decreased, but FD less and PD more than expected by chance. During the dry season, tadpole assemblages were characterised by functional redundancy (among assemblages—with increasing SR), high FD (compared to a null model), and low PD (phylogenetic clustering; compared to a null model). Although mutually contradictory at first glance, these results indicate competition as tadpole community assembly driving force. This is true during the limiting cool-dry season but not during the more suitable warm-wet season. We thereby show that assembly rules can strongly depend on season, that comparing FD and PD can reveal such forces, that FD and PD are not interchangeable, and that conclusions on assembly rules based on FD alone are critical. PMID:27014867

Microfossils from oolites and pisolites of the Upper Proterozoic Eleonore Bay Group, Central East Greenland

NASA Technical Reports Server (NTRS)

Green, J. W.; Knoll, A. H.; Swett, K.

1988-01-01

Silicified oolites and pisolites from Bed 18 of the Upper Proterozoic (about 700-800 Ma) Limestone-Dolomite "Series" of the Eleonore Bay Group, central East Greenland, contain a diverse suite of organically preserved microfossils that is, for the most part. [Of the] assemblages previously described from Proterozoic cherts and shales. Three principal assemblages occur in these rocks: 1) a class bound assemblage found in detrital carbonate grains (now silicified) that served as nuclei for ooid and pisoid growth, as well as in uncoated mud and mat clasts that were carried into the zone of ooid and pisoid deposition; 2) an epilithic and interstitial assemblage consisting of microorganisms that occurred on top of and between grains; and 3) a euendolithic assemblage composed of microbes that actively bored into coated grains. The Upper Proterozoic euendolithic assemblage closely resembles a community of euendolithic cyanobacteria found today in shallow marine ooid sands of the Bahama Banks. Thirteen species are described, of which eight are new, five representing new genera: Eohyella dichotoma n. sp., Eohyella endoatracta n. sp., Eohyella rectoclada n. sp., Thylacocausticus globorum n. gen. and sp., Cunicularius halleri n. gen. and sp., Graviglomus incrustus n. gen. and sp., Perulagranum obovatum n. gen. and sp., and Parenchymodiscus endolithicus n. gen. and sp.

The proportion of impervious surfaces at the landscape scale structures wild bee assemblages in a densely populated region.

PubMed

Geslin, Benoît; Le Féon, Violette; Folschweiller, Morgane; Flacher, Floriane; Carmignac, David; Motard, Eric; Perret, Samuel; Dajoz, Isabelle

2016-09-01

Given the predicted expansion of cities throughout the world, understanding the effect of urbanization on bee fauna is a major issue for the conservation of bees. The aim of this study was to understand how urbanization affects wild bee assemblages along a gradient of impervious surfaces and to determine the influence of landscape composition and floral resource availability on these assemblages. We chose 12 sites with a proportion of impervious surfaces (soil covered by parking, roads, and buildings) ranging from 0.06% to 64.31% within a 500 m radius. We collected using pan trapping and estimated the landscape composition of the sites within a 500 m radius and the species richness of plant assemblages within a 200 m radius. We collected 1104 bees from 74 species. The proportion of impervious surfaces at the landscape scale had a negative effect on wild bee abundance and species richness, whereas local flower composition had no effect. Ground-nesting bees were particularly sensitive to the urbanization gradient. This study provides new evidences of the impact of urbanization on bee assemblages and the proportion of impervious surfaces at the landscape scale emerged as a key factor that drives those assemblages.

Tropical Mosquito Assemblages Demonstrate ‘Textbook’ Annual Cycles

PubMed Central

Franklin, Donald C.; Whelan, Peter I.

2009-01-01

Background Annual biological rhythms are often depicted as predictably cyclic, but quantitative evaluations are few and rarely both cyclic and constant among years. In the monsoon tropics, the intense seasonality of rainfall frequently drives fluctuations in the populations of short-lived aquatic organisms. However, it is unclear how predictably assemblage composition will fluctuate because the intensity, onset and cessation of the wet season varies greatly among years. Methodology/Principal Findings Adult mosquitoes were sampled using EVS suction traps baited with carbon dioxide around swamplands adjacent to the city of Darwin in northern Australia. Eleven sites were sampled weekly for five years, and one site weekly for 24 years, the sample of c. 1.4 million mosquitoes yielding 63 species. Mosquito abundance, species richness and diversity fluctuated seasonally, species richness being highly predictable. Ordination of assemblage composition demonstrated striking annual cycles that varied little from year to year. The mosquito assemblage was temporally structured by a succession of species peaks in abundance. Conclusion/Significance Ordination provided strong visual representation of annual rhythms in assemblage composition and the means to evaluate variability among years. Because most mosquitoes breed in shallow freshwater which fluctuates with rainfall, we did not anticipate such repeatability; we conclude that mosquito assemblage composition appears adapted to predictable elements of the rainfall. PMID:20011531

Exploring coral microbiome assemblages in the South China Sea.

PubMed

Cai, Lin; Tian, Ren-Mao; Zhou, Guowei; Tong, Haoya; Wong, Yue Him; Zhang, Weipeng; Chui, Apple Pui Yi; Xie, James Y; Qiu, Jian-Wen; Ang, Put O; Liu, Sheng; Huang, Hui; Qian, Pei-Yuan

2018-02-05

Coral reefs are significant ecosystems. The ecological success of coral reefs relies on not only coral-algal symbiosis but also coral-microbial partnership. However, microbiome assemblages in the South China Sea corals remain largely unexplored. Here, we compared the microbiome assemblages of reef-building corals Galaxea (G. fascicularis) and Montipora (M. venosa, M. peltiformis, M. monasteriata) collected from five different locations in the South China Sea using massively-parallel sequencing of 16S rRNA gene and multivariate analysis. The results indicated that microbiome assemblages for each coral species were unique regardless of location and were different from the corresponding seawater. Host type appeared to drive the coral microbiome assemblages rather than location and seawater. Network analysis was employed to explore coral microbiome co-occurrence patterns, which revealed 61 and 80 co-occurring microbial species assembling the Galaxea and Montipora microbiomes, respectively. Most of these co-occurring microbial species were commonly found in corals and were inferred to play potential roles in host nutrient metabolism; carbon, nitrogen, sulfur cycles; host detoxification; and climate change. These findings suggest that the co-occurring microbial species explored might be essential to maintain the critical coral-microbial partnership. The present study provides new insights into coral microbiome assemblages in the South China Sea.

Macroalgal Composition Determines the Structure of Benthic Assemblages Colonizing Fragmented Habitats

PubMed Central

Matias, Miguel G.; Arenas, Francisco; Rubal, Marcos; Pinto, Isabel S.

2015-01-01

Understanding the consequences of fragmentation of coastal habitats is an important topic of discussion in marine ecology. Research on the effects of fragmentation has revealed complex and context-dependent biotic responses, which prevent generalizations across different habitats or study organisms. The effects of fragmentation in marine environments have been rarely investigated across heterogeneous habitats, since most studies have focused on a single type of habitat or patch. In this study, we assessed the effects of different levels of fragmentation (i.e. decreasing size of patches without overall habitat loss). We measured these effects using assemblages of macro-invertebrates colonizing representative morphological groups of intertidal macroalgae (e.g. encrusting, turf and canopy-forming algae). For this purpose, we constructed artificial assemblages with different combinations of morphological groups and increasing levels of fragmentation by manipulating the amount of bare rock or the spatial arrangement of different species in mixed assemblages. In general, our results showed that 1) fragmentation did not significantly affect the assemblages of macroinvertebrates; 2) at greater levels of fragmentation, there were greater numbers of species in mixed algal assemblages, suggesting that higher habitat complexity promotes species colonization. Our results suggest that predicting the consequences of fragmentation in heterogeneous habitats is dependent on the type and diversity of morphological groups making up those habitats. PMID:26554924

Temporal distribution of intertidal macrozoobenthic assemblages in a Nanozostera noltii-dominated area (Lagoon of Venice).

PubMed

Tagliapietra, D; Pessa, G; Cornello, M; Zitelli, A; Magni, P

2016-03-01

We describe the temporal distribution of intertidal macrozoobenthic assemblages in a small marsh pond of the Lagoon of Venice colonized by the seagrass Nanozostera noltii (Hornemman) Tomlinson et Posluzny. Three stations ranging in the degree of N. noltii cover were selected about 100 m apart and sampled 9 times at regular intervals from March 1996 to March 1997. We applied the concepts of resistance and resilience to "natural stress" (e.g. extent of protection from seagrass meadows, exposure of macrozoobenthic assemblages to high temperatures in summer) with the aim to assess the stability of a community along a gradient of seagrass coverage. Results showed that the most structured and taxa-rich macrozoobenthic assemblage occurred at the station covered by a continuous stand of N. noltii, where permanent taxa (i.e. found in 100% of samples) were almost double than those found at the other stations. During the annual cycle, the macrozoobenthic assemblages showed a cyclical pattern, with temporal fluctuations increasing as they moved further away from the seagrass beds. We propose the role of N. noltii offering structural complexity and stability as the more probable explanation to the observed differences between stations in the intertidal assemblages. Copyright © 2015 Elsevier Ltd. All rights reserved.

Using diatom assemblages to assess urban stream conditions

USGS Publications Warehouse

Walker, C.E.; Pan, Y.

2006-01-01

We characterized changes in diatom assemblages along an urban-to-rural gradient to assess impacts of urbanization on stream conditions. Diatoms, water chemistry, and physical variables of riffles at 19 urban and 28 rural stream sites were sampled and assessed during the summer base flow period. Near stream land use was characterized using GIS. In addition, one urban and one rural site were sampled monthly throughout a year to assess temporal variation of diatom assemblages between the urban and rural stream sites. Canonical correspondence analysis (CCA) showed that the 1st ordination axis distinctly separated rural and urban sites. This axis was correlated with conductivity (r = 0.75) and % near-stream commercial/industrial land use (r = 0.55). TWINSPAN classified all sites into four groups based on diatom assemblages. These diatom-based site groups were significantly different in water chemistry (e.g., conductivity, dissolved nutrients), physical habitat (e.g., % stream substrate as fines), and near-stream land use. CCA on the temporal diatom data set showed that diatom assemblages had high seasonal variation along the 2nd axis in both urban and rural sites, however, rural and urban sites were well separated along the 1st ordination axis. Our results suggest that changes in diatom assemblages respond to urban impacts on stream conditions. ?? Springer 2006.

Gossan Hill, Victoria Island, Northwest Territories: An analogue for mine waste reactions within permafrost and implication for the subsurface mineralogy of Mars

NASA Astrophysics Data System (ADS)

Peterson, Ronald C.; Williamson, Marie-Claude; Rainbird, Robert H.

2014-08-01

Gossan Hill is located within the Minto Inlier in central Victoria Island, Northwest Territories (N 71.36697°, W 114.95155°). A study of the mineralogical associations and geological setting of this deposit indicates that it is an arrested hydrothermal system frozen in permafrost. From above, the hill stands out because of the topographic relief of 75 m and the orange-brown color of the surficial material. The surface of the hill is marked by areas of concentric color zonation up to 3 m across, with light gray centers surrounded by a yellow-orange ring that is surrounded by an orange-brown color that covers the rest of the surface of the hill. Trenches dug into these areas reveal that the central zone contains quartz and pyrite +/- native sulfur in a loose aggregate of sand-sized grains. This central area is surrounded by a zone dominated by gypsum and quartz with some jarosite. Beyond this, the surrounding surface consists of quartz, hematite, and amorphous iron oxides. The radial arrangement of the mineral assemblage indicates an increase in oxidation of sulfur from the center outward. Analysis of isotopic composition of the sulfur indicates the source of sulfur could be the underlying strata. The hill is underlain by inter-bedded carbonate and sulfate-evaporite sedimentary rocks of the Kilian formation in the upper part of the Neoproterozoic Shaler Super group. The sedimentary rocks were intruded by diabase sills of the 720 Ma Franklin igneous event, which crop out 2 km to the south of Gossan Hill. The soft friable nature of the deposit and the topographic relief of the hill indicate a post-glacial (Pleistocene) age of formation. Permafrost has maintained the disequilibrium mineral assemblage since the cessation of fluid flow. Extraction of the permafrost ice from the central zone yields a liquid with a pH of 2.3. The observed long-term persistence of pyrite encased within the acidic permafrost indicates that oxidation and dissolution reactions common in mine waste are slowed, if not stopped, in such an environment. The predicted rise of Arctic temperatures will cause the active layer to move deeper and result in the release of the acidic solutions frozen in the permafrost. Water ice or frozen CO2 just below the Martian surface would also preserve such mineral disequilibrium for very long periods of time. No region exists on Earth where ice has existed continuously for millions of years, but the Gossan Hill deposit is an excellent terrestrial analogue. On Mars, the subsurface ice may be very old. Ancient reactive Martian mineral assemblages and the fluids associated with them will reflect conditions that existed in the past.

Plant and soil effects on bacterial communities associated with Miscanthus  ×  giganteus rhizosphere and rhizomes

DOE PAGES

Li, Dongfang; Voigt, Thomas B.; Kent, Angela D.

2015-02-11

Here, bacterial assemblages, especially diazotroph assemblages residing in the rhizomes and the rhizosphere soil of Miscanthus × giganteus, contribute to plant growth and nitrogen use efficiency. However, the composition of these microbial communities has not been adequately explored nor have the potential ecological drivers for these communities been sufficiently studied. This knowledge is needed for understanding and potentially improving M. × giganteus – microbe interactions, and further enhancing sustainability of M. × giganteus production. In this study, cultivated M. × giganteus from four sites in Illinois, Kentucky, Nebraska, and New Jersey were collected to examine the relative influences of soilmore » conditions and plant compartments on assembly of the M. × giganteus-associated microbiome. Automated ribosomal intergenic spacer (ARISA) and terminal restriction fragment length polymorphism (T-RFLP) targeting the nifH gene were applied to examine the total bacterial communities and diazotroph assemblages that reside in the rhizomes and the rhizosphere. Distinct microbial assemblages were detected in the endophytic and rhizosphere compartments. Site soil conditions had strong correlation with both total bacterial and diazotroph assemblages, but in different ways. Nitrogen treatments showed no significant effect on the composition of diazotroph assemblages in most sites. Endophytic compartments of different M. × giganteus plants tended to harbor similar microbial communities across all sites, whereas the rhizosphere soil of different plant tended to harbor diverse microbial assemblages that were distinct among sites. These observations offer insight into better understanding of the associative interactions between M. × giganteus and diazotrophs, and how this relationship is influenced by agronomic and edaphic factors.« less

Seagrass epiphytic assemblages are strong indicators of agricultural discharge but weak indicators of host features

NASA Astrophysics Data System (ADS)

Prado, Patricia

2018-05-01

Wastewater pulses from rice agriculture are persistently discharged into the northern shore of the Alfacs Bay (Ebro Delta, NW Mediterranean) from April to November. The bay also receives water from coastal lagoons which are subjected to freshwater inputs from the Ebro River mixed to an unknown extent with agricultural wastewater during the same period. This paper compares epiphyte assemblages growing on leaves of Cymodocea nodosa in sites exposed to agricultural drainage channels, lagoon connection channels, and control sites in the Ebro Delta Natural Park (southern shore of the bay). Leaf epiphytic assemblages of Zostera noltii patches in the northern shore of the bay were also compared with those of adjacent beds of C. nodosa. Drainage channel sites had consistently distinctive assemblages (higher species richness, biomass load, and taxa composition) than control sites. Assemblages from lagoon channel sites were more variable, with three sites showing particularly high covers of epiphytic algae and two sites more similar to controls. Epiphyte patterns clearly matched in situ measures of nutrient availability, and were consistent with decreased shoot densities in discharge sites. In contrast, differences in epiphyte assemblages between seagrass species were minor, and mostly a result of higher epiphytic loads on C. nodosa than on Z. noltii, which features thinner leaves. Further research is needed to investigate the consequences of these plant and epiphyte alterations in important ecosystem processes such as decomposition and export rates, as well as overall effects of nutrients and salinity in secondary producers such as associated macroinvertebrate assemblages supporting locally important marine fisheries.

Mass coral bleaching causes biotic homogenization of reef fish assemblages.

PubMed

Richardson, Laura E; Graham, Nicholas A J; Pratchett, Morgan S; Eurich, Jacob G; Hoey, Andrew S

2018-04-06

Global climate change is altering community composition across many ecosystems due to nonrandom species turnover, typically characterized by the loss of specialist species and increasing similarity of biological communities across spatial scales. As anthropogenic disturbances continue to alter species composition globally, there is a growing need to identify how species responses influence the establishment of distinct assemblages, such that management actions may be appropriately assigned. Here, we use trait-based analyses to compare temporal changes in five complementary indices of reef fish assemblage structure among six taxonomically distinct coral reef habitats exposed to a system-wide thermal stress event. Our results revealed increased taxonomic and functional similarity of previously distinct reef fish assemblages following mass coral bleaching, with changes characterized by subtle, but significant, shifts toward predominance of small-bodied, algal-farming habitat generalists. Furthermore, while the taxonomic or functional richness of fish assemblages did not change across all habitats, an increase in functional originality indicated an overall loss of functional redundancy. We also found that prebleaching coral composition better predicted changes in fish assemblage structure than the magnitude of coral loss. These results emphasize how measures of alpha diversity can mask important changes in the structure and functioning of ecosystems as assemblages reorganize. Our findings also highlight the role of coral species composition in structuring communities and influencing the diversity of responses of reef fishes to disturbance. As new coral species configurations emerge, their desirability will hinge upon the composition of associated species and their capacity to maintain key ecological processes in spite of ongoing disturbances. © 2018 John Wiley & Sons Ltd.