Science.gov

Sample records for atlas level-1 barrel

  1. The ATLAS TRT Barrel Detector

    NASA Astrophysics Data System (ADS)

    ATLAS TRT Collaboration; Abat, E.; Addy, T. N.; Åkesson, T. P. A.; Alison, J.; Anghinolfi, F.; Arik, E.; Arik, M.; Atoian, G.; Auerbach, B.; Baker, O. K.; Banas, E.; Baron, S.; Bault, C.; Becerici, N.; Beddall, A.; Beddall, A. J.; Bendotti, J.; Benjamin, D. P.; Bertelsen, H.; Bingul, A.; Blampey, H.; Bocci, A.; Bochenek, M.; Bondarenko, V. G.; Bychkov, V.; Callahan, J.; Capeáns Garrido, M.; Cardiel Sas, L.; Catinaccio, A.; Cetin, S. A.; Chandler, T.; Chritin, R.; Cwetanski, P.; Dam, M.; Danielsson, H.; Danilevich, E.; David, E.; Degenhardt, J.; Di Girolamo, B.; Dittus, F.; Dixon, N.; Dogan, O. B.; Dolgoshein, B. A.; Dressnandt, N.; Driouchi, C.; Ebenstein, W. L.; Eerola, P.; Egede, U.; Egorov, K.; Evans, H.; Farthouat, P.; Fedin, O. L.; Fowler, A. J.; Fratina, S.; Froidevaux, D.; Fry, A.; Gagnon, P.; Gavrilenko, I. L.; Gay, C.; Ghodbane, N.; Godlewski, J.; Goulette, M.; Gousakov, I.; Grigalashvili, N.; Grishkevich, Y.; Grognuz, J.; Hajduk, Z.; Hance, M.; Hansen, F.; Hansen, J. B.; Hansen, P. H.; Hanson, G.; Hare, G. A.; Harvey, A., Jr.; Hauviller, C.; High, A.; Hulsbergen, W.; Huta, W.; Issakov, V.; Istin, S.; Jain, V.; Jarlskog, G.; Jeanty, L.; Kantserov, V. A.; Kaplan, B.; Kapliy, A. S.; Katounine, S.; Kayumov, F.; Keener, P. T.; Kekelidze, G. D.; Khabarova, E.; Khristachev, A.; Kisielewski, B.; Kittelmann, T. H.; Kline, C.; Klinkby, E. B.; Klopov, N. V.; Ko, B. R.; Koffas, T.; Kondratieva, N. V.; Konovalov, S. P.; Koperny, S.; Korsmo, H.; Kovalenko, S.; Kowalski, T. Z.; Krüger, K.; Kramarenko, V.; Kudin, L. G.; LeBihan, A.-C.; LeGeyt, B. C.; Levterov, K.; Lichard, P.; Lindahl, A.; Lisan, V.; Lobastov, S.; Loginov, A.; Loh, C. W.; Lokwitz, S.; Long, M. C.; Lucas, S.; Lucotte, A.; Luehring, F.; Lundberg, B.; Mackeprang, R.; Maleev, V. P.; Manara, A.; Mandl, M.; Martin, A. J.; Martin, F. F.; Mashinistov, R.; Mayers, G. M.; McFarlane, K. W.; Mialkovski, V.; Mills, B. M.; Mindur, B.; Mitsou, V. A.; Mjörnmark, J. U.; Morozov, S. V.; Morris, E.; Mouraviev, S. V.; Muir, A. M.; Munar, A.; Nadtochi, A. V.; Nesterov, S. Y.; Newcomer, F. M.; Nikitin, N.; Novgorodova, O.; Novodvorski, E. G.; Ogren, H.; Oh, S. H.; Oleshko, S. B.; Olivito, D.; Olszowska, J.; Ostrowicz, W.; Passmore, M. S.; Patrichev, S.; Penwell, J.; Perez-Gomez, F.; Peshekhonov, V. D.; Petersen, T. C.; Petti, R.; Placci, A.; Poblaguev, A.; Pons, X.; Price, M. J.; hne, O. Rø; Reece, R. D.; Reilly, M. B.; Rembser, C.; Romaniouk, A.; Rousseau, D.; Rust, D.; Ryabov, Y. F.; Ryjov, V.; Söderberg, M.; Savenkov, A.; Saxon, J.; Scandurra, M.; Schegelsky, V. A.; Scherzer, M. I.; Schmidt, M. P.; Schmitt, C.; Sedykh, E.; Seliverstov, D. M.; Shin, T.; Shmeleva, A.; Sivoklokov, S.; Smirnov, S. Yu; Smirnova, L.; Smirnova, O.; Smith, P.; Sosnovtsev, V. V.; Sprachmann, G.; Subramania, S.; Suchkov, S. I.; Sulin, V. V.; Szczygiel, R. R.; Tartarelli, G.; Thomson, E.; Tikhomirov, V. O.; Tipton, P.; Valls Ferrer, J. A.; Van Berg, R.; Vassilakopoulos, V. I.; Vassilieva, L.; Wagner, P.; Wall, R.; Wang, C.; Whittington, D.; Williams, H. H.; Zhelezko, A.; Zhukov, K.

    2008-02-01

    The ATLAS TRT barrel is a tracking drift chamber using 52,544 individual tubular drift tubes. It is one part of the ATLAS Inner Detector, which consists of three sub-systems: the pixel detector spanning the radius range 4 to 20 cm, the semiconductor tracker (SCT) from 30 to 52 cm, and the transition radiation tracker (TRT) from 56 to 108 cm. The TRT barrel covers the central pseudo-rapidity region |η|< 1, and the TRT while endcaps cover the forward and backward eta regions. These TRT systems provide a combination of continuous tracking with many measurements in individual drift tubes (or straws) and of electron identification based on transition radiation from fibers or foils interleaved between the straws themselves. This paper describes the recently-completed construction of the TRT Barrel detector, including the quality control procedures used in the fabrication of the detector.

  2. The CMS Level-1 Trigger Barrel Track Finder

    NASA Astrophysics Data System (ADS)

    Ero, J.; Evangelou, I.; Flouris, G.; Foudas, C.; Guiducci, L.; Loukas, N.; Manthos, N.; Papadopoulos, I.; Paradas, E.; Sotiropoulos, S.; Sphicas, P.; Triossi, A.; Wulz, C.

    2016-03-01

    The design and performance of the upgraded CMS Level-1 Trigger Barrel Muon Track Finder (BMTF) is presented. Monte Carlo simulation data as well as cosmic ray data from a CMS muon detector slice test have been used to study in detail the performance of the new track finder. The design architecture is based on twelve MP7 cards each of which uses a Xilinx Virtex-7 FPGA and can receive and transmit data at 10 Gbps from 72 input and 72 output fibers. According to the CMS Trigger Upgrade TDR the BMTF receives trigger primitive data which are computed using both RPC and DT data and transmits data from a number of muon candidates to the upgraded Global Muon Trigger. Results from detailed studies of comparisons between the BMTF algorithm results and the results of a C++ emulator are also presented. The new BMTF will be commissioned for data taking in 2016.

  3. Operation of the Upgraded ATLAS Level-1 Central Trigger System

    NASA Astrophysics Data System (ADS)

    Glatzer, Julian

    2015-12-01

    The ATLAS Level-1 Central Trigger (L1CT) system is a central part of ATLAS data-taking and has undergone a major upgrade for Run 2 of the LHC, in order to cope with the expected increase of instantaneous luminosity of a factor of two with respect to Run 1. The upgraded hardware offers more flexibility in the trigger decisions due to the factor of two increase in the number of trigger inputs and usable trigger channels. It also provides an interface to the new topological trigger system. Operationally - particularly useful for commissioning, calibration and test runs - it allows concurrent running of up to three different subdetector combinations. An overview of the operational software framework of the L1CT system with particular emphasis on the configuration, controls and monitoring aspects is given. The software framework allows a consistent configuration with respect to the ATLAS experiment and the LHC machine, upstream and downstream trigger processors, and the data acquisition system. Trigger and dead-time rates are monitored coherently at all stages of processing and are logged by the online computing system for physics analysis, data quality assurance and operational debugging. In addition, the synchronisation of trigger inputs is watched based on bunch-by-bunch trigger information. Several software tools allow for efficient display of the relevant information in the control room in a way useful for shifters and experts. The design of the framework aims at reliability, flexibility, and robustness of the system and takes into account the operational experience gained during Run 1. The Level-1 Central Trigger was successfully operated with high efficiency during the cosmic-ray, beam-splash and first Run 2 data taking with the full ATLAS detector.

  4. Measurement of the response of the ATLAS liquid argon barrel calorimeter to electrons at the 2004 combined test-beam

    SciTech Connect

    Aharrouche, M.; Ma, H.; Adam-Bourdarios, C.; Aleksa, M.; Banfi, D.; Benchekroun, D.; Benslama, K.; Boonekamp, M.; Carli, T.; Carminati, L.; Chen, H.; Citterio, M.; Dannheim, D.; Delmastro, M.; Derue, F.; Di Girolamo, B.; El Kacimi, M.; Fanti, M.; Froeschl, R.; Fournier, D.; Grahn, K.-J.; Kado, M.; Kerschen, N.; Lafaye, R.; Laforge, B.; Lampl, W.; Laplace, S.; Lechowski, M.; Lelas, D.; Liang, Z.; Loureiro, K.; Lund-Jensen, B.; Mandelli, L.; Mazzanti, M.; McPherson, R.; Meng, Z.; Paganis, S.; Prieur, D.; Puzo, P.; Ridel, M.; Riu, I.; Rousseau, D.; Sauvage, G.; Schwemling, P.; Simon, S.; Spano, F.; Straessner, A.; Tarrade, F.; Tartarelli, F.; Thioye, M.; Unal, G.; Wilkens, H.; Wingerter-Seez, I. and Zhang, H.

    2010-03-11

    During summer and fall 2004, the response of a full slice of the ATLAS barrel detector to different particles was studied in controlled beam. One module of the ATLAS liquid argon barrel calorimeter - identical to the production modules and read out by the final front-end and back-end electronics - was used for electromagnetic calorimetry. This paper presents and discusses the electron performance of the LAr barrel calorimeter, including linearity, uniformity, and resolution with different amounts of material upstream the calorimeter and energies ranging from 1 to 250 GeV.

  5. L1Track: A fast Level 1 track trigger for the ATLAS high luminosity upgrade

    NASA Astrophysics Data System (ADS)

    Cerri, Alessandro

    2016-07-01

    With the planned high-luminosity upgrade of the LHC (HL-LHC), the ATLAS detector will see its collision rate increase by approximately a factor of 5 with respect to the current LHC operation. The earliest hardware-based ATLAS trigger stage ("Level 1") will have to provide a higher rejection factor in a more difficult environment: a new improved Level 1 trigger architecture is under study, which includes the possibility of extracting with low latency and high accuracy tracking information in time for the decision taking process. In this context, the feasibility of potential approaches aimed at providing low-latency high-quality tracking at Level 1 is discussed.

  6. Comparison of data with Monte Carlo simulations at the ATLAS barrel combined testbeam 2004

    NASA Astrophysics Data System (ADS)

    Speckmayer, P.

    2009-04-01

    The scheme adopted as baseline by ATLAS for the calibration of hadrons depends strongly on the quality of the description of the data by simulations. In 2004, the calorimeters of the ATLAS barrel region have been exposed to a testbeam in order to evaluate the energy response of pions for the energies ranging from 1 to 350 GeV. For the energy region from 3 to 9 GeV a data analysis with the full systematic uncertainty is available. The data has been compared extensively to GEANT4 simulations. Several combinations of physical models—the so called "physics lists"—are provided by the GEANT4 collaboration and have been evaluated. The best overall description of data is achieved with the physics list QGSP_BERT which describes the energy response of pions within a few percent. QGSP_BERT has been adopted by ATLAS for the simulation of the first data.

  7. Performance of ATLAS RPC Level-1 muon trigger during the 2015 data taking

    NASA Astrophysics Data System (ADS)

    Corradi, M.

    2016-09-01

    RPCs are used in the ATLAS experiment at the LHC for the muon trigger system in the barrel region, which corresponds to a pseudorapidity range of |η|<1.05. The status of the system during the 2015 data taking is presented, including measurements of the RPC detector efficiencies and of the trigger performance. The RPC system has been active in more than 99.9% of the ATLAS data taking, showing very good reliability. The RPC detector efficiencies were close to Run 1 and to design values. The trigger efficiency for the high-pT thresholds used in single-muon triggers has been approximately 4% lower than in Run 1, mostly because of chambers disconnected from HV due to gas leaks. Two minor upgrades have been performed in preparation of Run 2 by adding the so-called feet and elevator chambers to increase the system acceptance. The feet chambers have been commissioned during 2015 and are included in the trigger since the last 2015 runs. Part of the elevator chambers are still in a commissioning phase and will probably need a replacement at the end of 2016.

  8. The Common Cryogenic Test Facility for the ATLAS Barrel and End-Cap Toroid Magnets

    NASA Astrophysics Data System (ADS)

    Delruelle, N.; Haug, F.; Junker, S.; Passardi, G.; Pengo, R.; Pirotte, O.

    2004-06-01

    The large ATLAS toroidal superconducting magnet made of the Barrel and two End-Caps needs extensive testing at the surface of the individual components prior to their final assembly into the underground cavern of LHC. A cryogenic test facility specifically designed for cooling sequentially the eight coils making the Barrel Toroid (BT) has been fully commissioned and is now ready for final acceptance of these magnets. This facility, originally designed for testing individually the 46 tons BT coils, will be upgraded to allow the acceptance tests of the two End-Caps, each of them having a 160 tons cold mass. The integrated system mainly comprises a 1.2 kW@4.5 K refrigerator, a 10 kW liquid-nitrogen precooler, two cryostats housing liquid helium centrifugal pumps of respectively 80 g/s and 600 g/s nominal flow and specific instrumentation to measure the thermal performances of the magnets. This paper describes the overall facility with particular emphasis to the cryogenic features adopted to match the specific requirements of the magnets in the various operating scenarios.

  9. Hardware and firmware developments for the upgrade of the ATLAS Level-1 Central Trigger Processor

    NASA Astrophysics Data System (ADS)

    Anders, G.; Bertelsen, H.; Boisen, A.; Childers, T.; Dam, M.; Ellis, N.; Farthouat, P.; Gabaldon Ruiz, C.; Ghibaudi, M.; Gorini, B.; Haas, S.; Kaneda, M.; Ohm, C.; Silva Oliveira, M.; Pauly, T.; Pöttgen, R.; Schmieden, K.; Spiwoks, R.; Xella, S.

    2014-01-01

    The Central Trigger Processor (CTP) is the final stage of the ATLAS first level trigger system which reduces the collision rate of 40 MHz to a Level-1 event rate of 100 kHz. An upgrade of the CTP is currently underway to significantly increase the number of trigger inputs and trigger combinations, allowing additional flexibility for the trigger menu. We present the hardware and FPGA firmware of the newly designed core module (CTPCORE+) module of the CTP, as well as results from a system used for early firmware and software prototyping based on commercial FPGA evaluation boards. First test result from the CTPCORE+ module will also be shown.

  10. A flexible demonstrator system for the ATLAS level-1 calorimeter trigger

    SciTech Connect

    Brawn, I.; Carney, R.; Connors, A.

    1996-12-31

    The proposed level-1 calorimeter trigger system for ATLAS relies upon several key technologies which we have been testing in a demonstrator programme. We describe here the final phase of this programme, which concentrates on crucial aspects of high-speed data transmission inherent in the trigger architecture while operating with signals from prototype ATLAS calorimeters. The 36-channel trigger demonstrator system has been designed to provide a flexible infrastructure for the study of alternative techniques of communication between the calorimeters and the trigger processor, including both analogue links and high-speed digital optical and electrical links operating at up to 1.6 Gbaud. Data fan-out at 160 Mbit/s between trigger processor modules using serializing Application Specific Integrated Circuits (ASICs) driving transmission-line backplanes is also evaluated. A programmable timing system re-synchronizes all channels before pipeline processing by ASICs executing an electromagnetic cluster-finding algorithm. Some preliminary results are presented from the operation of this demonstrator system installed in the ATLAS test-beam at CERN.

  11. Upgrade of the ATLAS Level-1 Trigger with event topology information

    NASA Astrophysics Data System (ADS)

    Simioni, E.; Artz, S.; Bauβ, B.; Büscher, V.; Jakobi, K.; Kaluza, A.; Kahra, C.; Palka, M.; Reiβ, A.; Schäffer, J.; Schäfer, U.; Schulte, A.; Simon, M.; Tapprogge, S.; Vogel, A.; Zinser, M.

    2015-12-01

    The Large Hadron Collider (LHC) in 2015 will collide proton beams with increased luminosity from 1034 up to 3 × 1034cm-2s-1. ATLAS is an LHC experiment designed to measure decay properties of high energetic particles produced in the protons collisions. The higher luminosity places stringent operational and physical requirements on the ATLAS Trigger in order to reduce the 40MHz collision rate to a manageable event storage rate of 1kHz while at the same time, selecting those events with valuable physics meaning. The Level-1 Trigger is the first rate-reducing step in the ATLAS Trigger, with an output rate of 100kHz and decision latency of less than 2.5µs. It is composed of the Calorimeter Trigger (L1Calo), the Muon Trigger (L1Muon) and the Central Trigger Processor (CTP). By 2015, there will be a new electronics element in the chain: the Topological Processor System (L1Topo system). The L1Topo system consist of a single AdvancedTCA shelf equipped with three L1Topo processor blades. It will make it possible to use detailed information from L1Calo and L1Muon processed in individual state-of-the-art FPGA processors. This allows the determination of angles between jets and/or leptons and calculates kinematic variables based on lists of selected/sorted objects. The system is designed to receive and process up to 6Tb/s of real time data. The paper reports the relevant upgrades of the Level-1 trigger with focus on the topological processor design and commissioning.

  12. Production summary for extended barrel module fabrication at Argonne for the ATLAS tile calorimeter.

    SciTech Connect

    Guarino, V.; Hill, N.; Petereit, E.; Skrzecz, F.; Wood, K.; Proudfoot, J.; Anderson, S.; Caird, A.; Keyser, C.; Kocenko, L.; Matijas, Z.; Nephew, T.; Stanek, R.; Franchini, F.; High Energy Physics

    2007-11-14

    The Tile Calorimeter is one of the main hadronic calorimeters to be used in the ATLAS experiment at CERN [1,2]. It is a steel/scintillator sampling calorimeter which is built by stacking 64 segments in azimuth and 3 separate cylinders to provide a total structure whose length is approximately 12m and whose diameter is a little over 8.4m. It has a total weight of about 2630 metric tons. Important features of this calorimeter are: A minimum gap (1.5mm) between modules in azimuth; Pockets in the structure to hold the scintillator tiles; Recessed channels at the edges of the module into which the readout fibers will sit; and Holes in the structure through which a radioactive source will pass. The mechanical structure for one of the 3 calorimeter sections, the Extended Barrel (EBA) was constructed at Argonne. A schematic of the calorimeter sampling structure and the layout of one of the 64 segments, termed a module, are shown in figure 1. Each module comprises mechanically of a precision machined, structural girder to which 10 submodules are bolted. One of these submodules, the ITC, has a customized shape to accommodate services for other detector elements. Each submodule weighs 850Kg and the assembled mechanical structure of the module weighs approximately 9000Kg (a fully instrumented Extended Barrel modules weighs {approx}9600Kg). A crucial issue for the tile calorimeter assembly is the minimization of the un-instrumented gap between modules when they are stacked on top of each other during final assembly. The design goal was originally 1mm gap which was eventually relaxed to 1.5mm following a careful evaluation of all tolerances in the construction and assembly process as shown in figure 2 [3]. Submodules for this assembly were produced at 4 locations [4] using tooling and procedures which were largely identical [5]. An important issue was the height of each submodule on the stacking fixture on which they were fabricated as this defines the length along the girder

  13. Results of the Cryogenic Tests of the Superconducting Magnets Forming the Barrel Toroid of the Atlas Experiment

    NASA Astrophysics Data System (ADS)

    Barth, K.; Delruelle, N.; Dudarev, A.; Junker, S.; Pengo, R.; Pirotte, O.; Berriaud, C.

    2006-04-01

    The Barrel Toroid magnet of the ATLAS experiment will be built from eight 25 m × 5 m racetrack shaped superconducting coils that are symmetrically placed around the central axis of the detector. Prior to their final assembly in the underground cavern of the LHC, these magnets are individually tested at ground level in order to verify the expected overall performances. A dedicated facility has been commissioned and the testing of the coils, at their nominal electrical and thermal operating conditions, has been carried out. The paper presents the results obtained during the cool-down phase from ambient temperature, the steady-state operation at 4.5 K, the 20 kA current ramping up/down and the thermal recovery after a fast energy dump of up to 138 MJ stored energy. Included are the measurements of the various thermal loads in both static and dynamic conditions.

  14. Simulation of the ATLAS SCT barrel module response to LHC beam loss scenarios

    NASA Astrophysics Data System (ADS)

    Rose, P.; Grillo, A. A.; Fadeyev, V.; Spencer, E.; Wilder, M.; Domingo, M.

    2014-03-01

    In the event of beam loss at the LHC, ATLAS Inner Detector components nearest the beam line may be subjected to unusually large amounts of radiation. Understanding their behavior in such an event is important in determining whether they would still function properly. We built a SPICE model of the silicon strip module electrical system to determine the behavior of its elements during a realistic beam loss scenario. We found that the power supply and bias filter characteristics strongly affect the module response in such scenarios. In particular, the following self-limiting phenomena were observed: there is a finite amount of charge initially available on the bias filter capacitors for collection by the strips; the power supply current limit reduces the rate at which the bias filter capacitors' charge can be replenished; the reduced bias voltage leads to a smaller depletion depth in the sensors which results in less collected charge. These effects provide a larger measure of safety during beam loss events than was previously assumed. In particular, the voltage across the coupling capacitor stays below the specifications limit for a wide range of beam loss rates. The current into the ABCD channels exceeds the limit only for very high rates of beam loss.

  15. Barrel alignment fixture

    NASA Astrophysics Data System (ADS)

    Sheeley, J. D.

    1981-04-01

    Fabrication of slapper type detonator cables requires bonding of a thin barrel over a bridge. Location of the barrel hole with respect to the bridge is critical: the barrel hole must be centered over the bridge uniform spacing on each side. An alignment fixture which permits rapid adjustment of the barrel position with respect to the bridge is described. The barrel is manipulated by pincer-type fingers which are mounted on a small x-y table equipped with micrometer adjustments. Barrel positioning, performed under a binocular microscopy, is rapid and accurate. After alignment, the microscope is moved out of position and an infrared (IR) heat source is aimed at the barrel. A 5-second pulse of infrared heat flows the adhesive under the barrel and bonds it to the cable. Sapphire and Fotoform glass barrels were bonded successfully with the alignment fixture.

  16. The PANDA Barrel DIRC

    NASA Astrophysics Data System (ADS)

    Dzhygadlo, R.; Schwarz, C.; Belias, A.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Britting, A.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Düren, M.; Etzelmüller, E.; Föhl, K.; Hayrapetyan, A.; Kröck, B.; Merle, O.; Rieke, J.; Schmidt, M.; Cowie, E.; Keri, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.

    2016-05-01

    The PANDA detector at the international accelerator Facility for Antiproton and Ion Research in Europe (FAIR) addresses fundamental questions of hadron physics. Experiments concerning charmonium spectroscopy, the search for hybrids and glueballs and the interaction of hidden and open charm particles with nucleons and nuclei will be performed with antiproton beams impinging on hydrogen or nuclear targets. Cooled beams allow the precision scan of resonances in formation experiments. The momentum range of the antiproton beam between 1.5 GeV/c and 15 GeV/c tests predictions by perturbation theory and will reveal deviations originating from strong QCD . An excellent hadronic particle identification will be accomplished by DIRC (Detection of Internally Reflected Cherenkov light) counters. The design for the barrel region is based on the successful BaBar DIRC with several key improvements, such as fast photon timing and a compact imaging region. DIRC designs based on different radiator geometries with several focusing options were studied in simulation. The performance of each design was characterized in terms of photon yield and single photon Cherenkov angle resolution. Selected design options were implemented in prototypes and tested with hadronic particle beams at GSI and CERN.

  17. Pressure wave: Gun barrel interactions

    NASA Astrophysics Data System (ADS)

    Crowley, A. B.; King, W. P. C.

    1986-01-01

    The interaction of pressure waves generated during the internal ballistics cycle with the vibrations of a tank barrel, and the possible effects on accuracy, are described. The investigation is based on codes simulating the complete internal ballistics cycle, including the venting of gases after shot exit, and the longitudinal and flexural vibration modes of the barrel, both of which were developed at the Royal Military College of Science. The computative effects of pressure waves on both accuracy and structural integrity are discussed for a number of different charge and barrel configurations.

  18. BARREL Team Launching 20 Balloons

    NASA Video Gallery

    A movie made by the NASA-Funded Balloon Array for Radiation belt Relativistic Electron Losses, or BARREL, team on their work launching 20 balloons in Antarctica during the Dec. 2013/Jan. 2014 campa...

  19. Assembly of 5.5-Meter Diameter Developmental Barrel Segments for the Ares I Upper Stage

    NASA Technical Reports Server (NTRS)

    Carter, Robert W.

    2011-01-01

    Full scale assembly welding of Ares I Upper Stage 5.5-Meter diameter cryogenic tank barrel segments has been performed at the Marshall Space Flight Center (MSFC). One full-scale developmental article produced under the Ares 1 Upper Stage project is the Manufacturing Demonstration Article (MDA) Barrel. This presentation will focus on the welded assembly of this barrel section, and associated lessons learned. Among the MDA articles planned on the Ares 1 Program, the Barrel was the first to be completed, primarily because the process of manufacture from piece parts (barrel panels) utilized the most mature friction stir process planned for use on the Ares US program: Conventional fixed pin Friction Stir Welding (FSW). This process is in use on other space launch systems, including the Shuttle s External Tank, the Delta IV common booster core, the Delta II, and the Atlas V rockets. The goals for the MDA Barrel development were several fold: 1) to prove out Marshall Space Flight Center s new Vertical Weld Tool for use in manufacture of cylindrical barrel sections, 2) to serve as a first run for weld qualification to a new weld specification, and 3) to provide a full size cylindrical section for downstream use in precision cleaning and Spray-on Foam Insulation development. The progression leading into the welding of the full size barrel included sub scale panel welding, subscale cylinder welding, a full length confidence weld, and finally, the 3 seamed MDA barrel processing. Lessons learned on this MDA program have been carried forward into the production tooling for the Ares 1 US Program, and in the use of the MSFC VWT in processing other large scale hardware, including two 8.4 meter diameter Shuttle External Tank barrel sections that are currently being used in structural analysis to validate shell buckling models.

  20. MISR Level 1A Products

    Atmospheric Science Data Center

    2013-04-01

    ... MISR Level 1A Products Level 1A Engineering Data File Type 1 and Level 1A Navigation Data Processing ... Product Specification Rev K  (PDF). Transparent software rebuild with Irix 6.5.2 OS. F01_0007 (FM_ENG), ...

  1. The PANDA Barrel DIRC detector

    NASA Astrophysics Data System (ADS)

    Hoek, M.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Hohler, R.; Kalicy, G.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Dodokhov, V. Kh.; Britting, A.; Eyrich, W.; Lehmann, A.; Uhlig, F.; Düren, M.; Föhl, K.; Hayrapetyan, A.; Kröck, B.; Merle, O.; Rieke, J.; Cowie, E.; Keri, T.; Montgomery, R.; Rosner, G.; Achenbach, P.; Cardinali, M.; Lauth, W.; Sfienti, C.; Thiel, M.; Bühler, P.; Gruber, L.; Marton, J.; Suzuki, K.

    2014-12-01

    The PANDA experiment at the new Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt, will study fundamental questions of hadron physics and QCD using high-intensity cooled antiproton beams with momenta between 1.5 and 15 GeV/c. Efficient Particle Identification for a wide momentum range and the full solid angle is required for reconstructing the various physics channels of the PANDA program. Hadronic Particle Identification in the barrel region of the detector will be provided by a DIRC counter. The design is based on the successful BABAR DIRC with important improvements, such as focusing optics and fast photon timing. Several of these improvements, including different radiator geometries and optics, were tested in particle beams at GSI and at CERN. The evolution of the conceptual design of the PANDA Barrel DIRC and the performance of complex prototypes in test beam campaigns will be discussed.

  2. The VENUS barrel electromagnetic calorimeter

    NASA Astrophysics Data System (ADS)

    Ogawa, K.; Hayashi, K.; Iwai, M.; Sumiyoshi, T.; Takasaki, F.; Teramoto, Y.; Uehara, T.; Sugimoto, S.; Kusomoto, H.; Yoshida, H.

    1986-02-01

    The VENUS barrel electromagnetic calorimeter for the TRISTAN electron-positron colliding experiment now under construction is described. It is composed of 5160 lead glass counters pointing to interaction point. It covers polar angles of 37°-143° and whole azimuthal angles. The energy resolution of this calorimeter is measured to be typically σ/E = 0.7% + 5.2%/√E.

  3. Development of an advanced electromagnetic gun barrel

    NASA Astrophysics Data System (ADS)

    Hurn, T. W.; D'Aoust, J.; Sevier, L.; Johnson, R.; Wesley, J.

    1993-01-01

    An advanced EM gun (AEMG) barrel was developed for the USAF Wright Laboratory to repetitively accelerate large-mass projectiles. The AEMG barrel employed 5-m rails, had a 50 mm square bore, and was designed to operate at a peak current of 1.5 MA (bore pressure 25 ksi). Key technical achievements included (1) an efficient barrel containment structure that weighs approximately 25 percent of a similarly rated clamped barrel, (2) an insulator material that retains surface resistivity after repeated firings, and (3) a high-velocity water cooling system designed to remove a peak heat flux of 5 MJ/sq m per shot. The AEMG barrel's thermal management system employed a 500 psi blowdown system that generated high velocity coolant flow rates in five axial coolant channels within each rail. Innovative fabrication processes were used to develop the barrel. A 2-m prototype of the AEMG barrel was tested in the General Atomics 4 MJ EM launcher test facility.

  4. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  5. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  6. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  7. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  8. Prototyping the PANDA Barrel DIRC

    NASA Astrophysics Data System (ADS)

    Schwarz, C.; Kalicy, G.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Hohler, R.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Dodokhov, V. Kh.; Britting, A.; Eyrich, W.; Lehmann, A.; Uhlig, F.; Düren, M.; Föhl, K.; Hayrapetyan, A.; Kröck, B.; Merle, O.; Rieke, J.; Cowie, E.; Keri, T.; Montgomery, R.; Rosner, G.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Sfienti, C.; Thiel, M.; Bühler, P.; Gruber, L.; Marton, J.; Suzuki, K.

    2014-12-01

    The design of the Barrel DIRC detector for the future PANDA experiment at FAIR contains several important improvements compared to the successful BABAR DIRC, such as focusing and fast timing. To test those improvements as well as other design options a prototype was build and successfully tested in 2012 with particle beams at CERN. The prototype comprises a radiator bar, focusing lens, mirror, and a prism shaped expansion volume made of synthetic fused silica. An array of micro-channel plate photomultiplier tubes measures the location and arrival time of the Cherenkov photons with sub-nanosecond resolution. The development of a fast reconstruction algorithm allowed to tune construction details of the detector setup with test beam data and Monte-Carlo simulations.

  9. Master plate production for the tile calorimeter extended barrel modules.

    SciTech Connect

    Guarino, V.J.; Hill, N.; Petereit, E.; Price, L.E.; Proudfoot, J.; Wood, K.

    1999-03-10

    Approximately 41,000 master plates (Fig. 1) are required for the Extended Barrel Hadronic Calorimeter for the ATLAS experiment at the LHC. Early in the R&D program associated with the detector, it was recognized that the fabrication of these steel laminations was a significant issue, both in terms of the cost to produce these high precision formed plates, as well as the length of time required to produce all plates for the calorimeter. Two approaches were given serious consideration: laser cutting and die stamping. The Argonne group was a strong supporter of the latter approach and in late 1995 initiated an R&D program to demonstrate the feasibility and cost effectiveness of die stamping these plates by constructing a die and stamping approximately 2000 plates for use in construction of three full size prototype modules. This was extremely successful and die stamping was selected by the group for production of these plates. When the prototype die was constructed it was matched to the calorimeter envelope at that time. This subsequently changed. However with some minor adjustments in the design envelope and a small compromise in terms of instrumented volume, it became possible to use this same die for the production of all master plates for the Tile Calorimeter. Following an extensive series of discussions and an evaluation of the performance of the stamping presses available to our collaborators in Europe, it was decided to ship the US die to CERN for use in stamping master plates for the barrel section of the calorimeter. This was done under the supervision of CERN and JINR, Dubna, and carried out at the TATRA truck plant at Koprivinice, Czech Republic. It was a great success. Approximately 41,000 plates were stamped and fully met specification. Moreover, the production time was significantly reduced by avoiding the need of constructing and then qualifying a second die for use in Europe. This also precluded small geometrical differences between the barrel and

  10. Multi-rail barrel design and performance

    NASA Astrophysics Data System (ADS)

    Maas, Brian L.; Bauer, David P.; Challita, Antonios

    1993-01-01

    Railgun barrels containing multiple isolated rail pairs can be used to control armature current distribution and/or to obtain independent circuits for use with specialized power supplies. Armature current control can be used to effectively distribute acceleration forces for improved projectile launch. Independent rail 'load' circuits are attractive for use with some power supplies such as a polyphase compulsator. We have built and tested a 30 mm barrel containing three distinct rail pairs. These three rail pairs were powered by separate power supplies. This paper describes issues associated with multi-rail barrel design and our band design and performance. Rail alignment, isolation, and construction are described. The effect of multiple rail pairs on the effective inductance gradient of the band is described and test results are provided.

  11. Rain Barrels: A Catalyst for Change?

    ERIC Educational Resources Information Center

    Bakacs, Michele E.; Haberland, Mike; Mangiafico, Salvatore S.; Winquist, Aileen; Obropta, Christopher C.; Boyajian, Amy; Mellor, Sara

    2013-01-01

    Over the past 4 years, rain barrel programming for residents has been implemented in both Northern Virginia and New Jersey as a method for educating the public about stormwater management and water conservation. Program participants demonstrated a significant increase in knowledge of water resource issues. Follow-up surveys showed 58% of New…

  12. Adapting to Pork-Barrel Science.

    ERIC Educational Resources Information Center

    Walsh, John

    1987-01-01

    Discusses the increasing trend toward the pork-barrel funding of science projects, particularly for grants to academic institutions. Addresses the new strategies being employed by opponents of such funding. Describes some of the possible ramifications of the various strategies and the perceived link between science funding and economic growth. (TW)

  13. DIOXIN FORMATION: THE BURN BARREL STUDY

    EPA Science Inventory

    The paper reports results from tests designed to examine some of the factors influencing the emissions of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDDs/Fs) from burn barrels. Results from PCDDs/Fs and polychlorinated biphenyls (PCBs) are reported, al...

  14. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... having the dimensions specified for a standard barrel for fruits, vegetables, and other dry commodities... form or dimensions, is a legal standard barrel for fruits, vegetables, or other dry commodities other... having the dimensions specified for a standard barrel for cranberries in section 1 of the...

  15. The ATLAS TRT end-cap detectors

    NASA Astrophysics Data System (ADS)

    ATLAS TRT Collaboration; Abat, E.; Addy, T. N.; Åkesson, T. P. A.; Alison, J.; Anghinolfi, F.; Arik, E.; Arik, M.; Atoian, G.; Auerbach, B.; Baker, O. K.; Banas, E.; Baron, S.; Bault, C.; Becerici, N.; Beddall, A.; Beddall, A. J.; Bendotti, J.; Benjamin, D. P.; Bertelsen, H.; Bingul, A.; Blampey, H.; Bocci, A.; Bochenek, M.; Bondarenko, V. G.; Bychkov, V.; Callahan, J.; Capeáns Garrido, M.; Cardiel Sas, L.; Catinaccio, A.; Cetin, S. A.; Chandler, T.; Chritin, R.; Cwetanski, P.; Dam, M.; Danielsson, H.; Danilevich, E.; David, E.; Degenhardt, J.; Di Girolamo, B.; Dittus, F.; Dixon, N.; Dobos, D.; Dogan, O. B.; Dolgoshein, B. A.; Dressnandt, N.; Driouchi, C.; Ebenstein, W. L.; Eerola, P.; Egede, U.; Egorov, K.; Evans, H.; Farthouat, P.; Fedin, O. L.; Fowler, A. J.; Fratina, S.; Froidevaux, D.; Fry, A.; Gagnon, P.; Gavrilenko, I. L.; Gay, C.; Ghodbane, N.; Godlewski, J.; Goulette, M.; Gousakov, I.; Grigalashvili, N.; Grishkevich, Y.; Grognuz, J.; Hajduk, Z.; Hance, M.; Hansen, F.; Hansen, J. B.; Hansen, J. D.; Hansen, P. H.; Hare, G. A.; Harvey, A., Jr.; Hauviller, C.; High, A.; Hulsbergen, W.; Huta, W.; Issakov, V.; Istin, S.; Jain, V.; Jarlskog, G.; Jeanty, L.; Kantserov, V. A.; Kaplan, B.; Kapliy, A. S.; Katounine, S.; Kayumov, F.; Keener, P. T.; Kekelidze, G. D.; Khabarova, E.; Khristachev, A.; Kisielewski, B.; Kittelmann, T. H.; Kline, C.; Klinkby, E. B.; Klopov, N. V.; Ko, B. R.; Koffas, T.; Kondratieva, N. V.; Konovalov, S. P.; Koperny, S.; Korsmo, H.; Kovalenko, S.; Kowalski, T. Z.; Krüger, K.; Kramarenko, V.; Kudin, L. G.; LeBihan, A.-C.; LeGeyt, B. C.; Levterov, K.; Lichard, P.; Lindahl, A.; Lisan, V.; Lobastov, S.; Loginov, A.; Loh, C. W.; Lokwitz, S.; Long, M. C.; Lucas, S.; Lucotte, A.; Luehring, F.; Lundberg, B.; Mackeprang, R.; Maleev, V. P.; Manara, A.; Mandl, M.; Martin, A. J.; Martin, F. F.; Mashinistov, R.; Mayers, G. M.; McFarlane, K. W.; Mialkovski, V.; Mills, B. M.; Mindur, B.; Mitsou, V. A.; Mjörnmark, J. U.; Morozov, S. V.; Morris, E.; Mouraviev, S. V.; Muir, A. M.; Munar, A.; Nadtochi, A. V.; Nesterov, S. Y.; Newcomer, F. M.; Nikitin, N.; Novgorodova, O.; Novodvorski, E. G.; Ogren, H.; Oh, S. H.; Oleshko, S. B.; Olivito, D.; Olszowska, J.; Ostrowicz, W.; Passmore, M. S.; Patrichev, S.; Penwell, J.; Perez-Gomez, F.; Peshekhonov, V. D.; Petersen, T. C.; Petti, R.; Placci, A.; Poblaguev, A.; Pons, X.; Price, M. J.; hne, O. Rø; Reece, R. D.; Reilly, M. B.; Rembser, C.; Romaniouk, A.; Rousseau, D.; Rust, D.; Ryabov, Y. F.; Ryjov, V.; Söderberg, M.; Savenkov, A.; Saxon, J.; Scandurra, M.; Schegelsky, V. A.; Scherzer, M. I.; Schmidt, M. P.; Schmitt, C.; Sedykh, E.; Seliverstov, D. M.; Shin, T.; Shmeleva, A.; Sivoklokov, S.; Smirnov, S. Yu; Smirnova, L.; Smirnova, O.; Smith, P.; Sosnovtsev, V. V.; Sprachmann, G.; Subramania, S.; Suchkov, S. I.; Sulin, V. V.; Szczygiel, R. R.; Tartarelli, G.; Thomson, E.; Tikhomirov, V. O.; Tipton, P.; Valls Ferrer, J. A.; Van Berg, R.; Vassilakopoulos, V. I.; Vassilieva, L.; Wagner, P.; Wall, R.; Wang, C.; Whittington, D.; Williams, H. H.; Zhelezko, A.; Zhukov, K.

    2008-10-01

    The ATLAS TRT end-cap is a tracking drift chamber using 245,760 individual tubular drift tubes. It is a part of the TRT tracker which consist of the barrel and two end-caps. The TRT end-caps cover the forward and backward pseudo-rapidity region 1.0 < |η| < 2.0, while the TRT barrel central η region |η| < 1.0. The TRT system provides a combination of continuous tracking with many measurements in individual drift tubes (or straws) and of electron identification based on transition radiation from fibers or foils interleaved between the straws themselves. Along with other two sub-system, namely the Pixel detector and Semi Conductor Tracker (SCT), the TRT constitutes the ATLAS Inner Detector. This paper describes the recently completed and installed TRT end-cap detectors, their design, assembly, integration and the acceptance tests applied during the construction.

  16. Barrel calorimeter of the CMD-3 detector

    SciTech Connect

    Shebalin, V. E. Anisenkov, A. V.; Aulchenko, V. M.; Bashtovoy, N. S.; Epifanov, D. A.; Epshteyn, L. B.; Grebenuk, A. A.; Ignatov, F. V.; Erofeev, A. L.; Kovalenko, O. A.; Kozyrev, A. N.; Kuzmin, A. S.; Logashenko, I. B.; Mikhailov, K. Yu.; Razuvaev, G. P.; Ruban, A. A.; Shwartz, B. A.; Talyshev, A. A.; Titov, V. M.; Yudin, Yu. V.

    2015-12-15

    The structure of the barrel calorimeter of the CMD-3 detector is presented in this work. The procedure of energy calibration of the calorimeter and the method of photon energy restoration are described. The distinctive feature of this barrel calorimeter is its combined structure; it is composed of two coaxial subsystems: a liquid xenon calorimeter and a crystalline CsI calorimeter. The calorimeter spatial resolution of the photon conversion point is about 2 mm, which corresponds to an angular resolution of ∼6 mrad. The energy resolution of the calorimeter is about 8% for photons with energy of 200 MeV and 4% for photons with energy of 1 GeV.

  17. Results from the SLD barrel CRID detector

    SciTech Connect

    Abe, K.; Antilogus, P. |; Aston, D.

    1993-11-01

    We report on operational experience with and experimental performance of the SLD barrel Cherenkov Ring Imaging Detector from the 1992 and 1993 physics runs. The liquid (C{sub 6}F{sub 14}) and gas (C{sub 5}F{sub 12}) radiator recirculation systems have performed well, and the drift gas supply system has operated successfully with TMAE for three years. Cherenkov rings have been observed from both the liquid and gas radiators. The number and angular resolution of Cherenkov photons have been measured, and found to be close to design specifications.

  18. Projectile dynamics at low barrel pressures

    NASA Astrophysics Data System (ADS)

    Chankaev, S. K.; Yakovlev, V. Ya.

    2007-11-01

    A mathematical model for a projectile shot at low pressures in the space behind the projectile space is developed. The pressure rise is limited because of the nonsimultaneity of propellant ignition and combustion and the discharge of the propellant combustion products through the gap between the projectile and the walls of the gun barrel. The kinetic characteristics of flame propagation over the propellant particles are determined. A comparison of calculation and experimental data is performed. The calculation results are used in designing 2A85 self-propelled launchers and upgrading 2A30 self-propelled launchers.

  19. Predicting transmembrane beta-barrels in proteomes

    PubMed Central

    Bigelow, Henry R.; Petrey, Donald S.; Liu, Jinfeng; Przybylski, Dariusz; Rost, Burkhard

    2004-01-01

    Very few methods address the problem of predicting beta-barrel membrane proteins directly from sequence. One reason is that only very few high-resolution structures for transmembrane beta-barrel (TMB) proteins have been determined thus far. Here we introduced the design, statistics and results of a novel profile-based hidden Markov model for the prediction and discrimination of TMBs. The method carefully attempts to avoid over-fitting the sparse experimental data. While our model training and scoring procedures were very similar to a recently published work, the architecture and structure-based labelling were significantly different. In particular, we introduced a new definition of beta- hairpin motifs, explicit state modelling of transmembrane strands, and a log-odds whole-protein discrimination score. The resulting method reached an overall four-state (up-, down-strand, periplasmic-, outer-loop) accuracy as high as 86%. Furthermore, accurately discriminated TMB from non-TMB proteins (45% coverage at 100% accuracy). This high precision enabled the application to 72 entirely sequenced Gram-negative bacteria. We found over 164 previously uncharacterized TMB proteins at high confidence. Database searches did not implicate any of these proteins with membranes. We challenge that the vast majority of our 164 predictions will eventually be verified experimentally. All proteome predictions and the PROFtmb prediction method are available at http://www.rostlab.org/services/PROFtmb/. PMID:15141026

  20. 1. EXTERIOR, SIDE OF PICKLE BARREL RESTAURANT AND ADJOINING STORE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. EXTERIOR, SIDE OF PICKLE BARREL RESTAURANT AND ADJOINING STORE - Silverton Historic District, East Thirteenth & Green Streets (Commercial Building), East Thirteenh & Green Streets, Silverton, San Juan County, CO

  1. The ATLAS Liquid Argon Calorimeter: Construction, Integration, Commissioning

    SciTech Connect

    Aleksa, Martin

    2006-10-27

    The ATLAS liquid argon (LAr) calorimeter system consists of an electromagnetic barrel calorimeter and two end caps with electromagnetic, hadronic and forward calorimeters. The liquid argon sampling technique, with an accordion geometry was chosen for the barrel electromagnetic calorimeter (EMB) and adapted to the end cap (EMEC). The hadronic end cap calorimeter (HEC) uses a copper-liquid argon sampling technique with flat plate geometry and is subdivided in depth in two wheels per end-cap. Finally, the forward calorimeter (FCAL) is composed of three modules employing cylindrical electrodes with thin liquid argon gaps.The construction of the full calorimeter system is complete since mid-2004. Production modules constructed in the home institutes were integrated into wheels at CERN in 2003-2004, and inserted into the three cryostats. They passed their first complete cold test before the lowering into the ATLAS cavern. Results of quality checks (e.g. electrical, mechanical, ...) performed on all the 190304 read-out channels after cool down will be reported. End 2004 the ATLAS barrel electromagnetic (EM) calorimeter was installed in the ATLAS cavern and since summer 2005 the front-end electronics are being connected and tested. Results of this first commissioning phase will be shown to demonstrate the high standards of quality control for our detectors.

  2. Recent results from the Crystal Barrel experiment

    SciTech Connect

    Not Available

    1991-10-09

    The Crystal Barrel experiment has been constructed and installed at the Low Energy Antiproton Ring (LEAR) at CERN. It has been fully operational since late 1989. In this talk, recent results of meson spectroscopy in p[bar p]-annihilations are presented. The main emphasis is on all-neutral annihilations, the study of the strange quark content of the proton, and the investigation of the decay mode of il particles. A 2[sup ++] resonance decaying into [pi][degrees][pi][degrees]at a mass of 1515 [plus minus] 10 MeV with a width of 120 [plus minus] 10 MeV has been seen in a 3[pi][degrees] final state.

  3. Recent results from the Crystal Barrel experiment

    SciTech Connect

    The Crystal Barrel Collaboration

    1991-10-09

    The Crystal Barrel experiment has been constructed and installed at the Low Energy Antiproton Ring (LEAR) at CERN. It has been fully operational since late 1989. In this talk, recent results of meson spectroscopy in p{bar p}-annihilations are presented. The main emphasis is on all-neutral annihilations, the study of the strange quark content of the proton, and the investigation of the decay mode of il particles. A 2{sup ++} resonance decaying into {pi}{degrees}{pi}{degrees}at a mass of 1515 {plus_minus} 10 MeV with a width of 120 {plus_minus} 10 MeV has been seen in a 3{pi}{degrees} final state.

  4. Refoldable Peptide Barrel -- Carbon Nanotube Junctions

    NASA Astrophysics Data System (ADS)

    Titov, Alexey; Wang, Boyang; Kral, Petr

    2008-03-01

    We design hybrid bio-nano-junctions formed by cylindrical peptide structures covalently attached to carbon nanotubes. The cylinders are composed of 5 pairs of antiparallel peptide strands that are ``one-to-one'' matched and covalently bonded through ester and amide bonds to the terminal C atoms in two (20,0) carbon nanotubes. The remaining terminal carbons in the CNTs are replaced by nitrogens, forming embedded quinoline-like structures. The used peptide strands are composed of charged amino acids that form cylindrical patterns with preferred stable configurations. By applying a torque to the nanotubes, we can reversibly fold and control the overall structure of the peptide barrels. The junctions might allow the collection and delivery of drugs and activation of biological molecules attached to them.

  5. 49 CFR 178.510 - Standards for wooden barrels.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... as follows: (1) The wood used must be of good quality, straight-grained, well-seasoned and free from knots, bark, rotten wood, sapwood or other defects likely to lessen the effectiveness of the barrel for... iron of good quality. The hoops of 2C2 barrels may be of a suitable hardwood. (5) For wooden...

  6. 27 CFR 25.141 - Barrels and kegs.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Barrels and kegs. 25.141 Section 25.141 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Marks, Brands, and Labels § 25.141 Barrels and kegs. (a)...

  7. TtOmp85, a β-Barrel Assembly Protein, Functions by Barrel Augmentation

    PubMed Central

    2015-01-01

    Outer membrane proteins are vital for Gram-negative bacteria and organisms that inherited organelles from them. Proteins from the Omp85/BamA family conduct the insertion of membrane proteins into the outer membrane. We show that an eight-stranded outer membrane β-barrel protein, TtoA, is inserted and folded into liposomes by an Omp85 homologue. Furthermore, we recorded the channel conductance of this Omp85 protein in black lipid membranes, alone and in the presence of peptides comprising the sequence of the two N-terminal and the two C-terminal β-strands of TtoA. Only with the latter could a long-living compound channel that exhibits conductance levels higher than those of the Omp85 protein alone be observed. These data support a model in which unfolded outer membrane protein after docking with its C-terminus penetrates into the transmembrane β-barrel of the Omp85 protein and augments its β-sheet at the first strand. Augmentation with successive β-strands leads to a compound, dilated barrel of both proteins. PMID:25537637

  8. English as a Second Language. Level 1.

    ERIC Educational Resources Information Center

    Lewandowski, Carol

    This guide is intended for use in a level 1 course in English as a second language that was developed as a component of a workplace literacy program for persons employed in the manufacturing and service industries. The course is structured so that, upon its completion, students will be able to accomplish the following: ask grammatically correct…

  9. Science Curriculum Guide, Levels 1 and 2.

    ERIC Educational Resources Information Center

    Newark School District, DE.

    The first two of four levels in a K-12 science curriculum are outlined. In Level 1 (grades K-2) and Level 2 (grades 3-5), science areas include the study of living things, matter and energy, and solar system and universe. Conveniently listed are page locations for educational and instructional objectives, cross-referenced to science area and coded…

  10. Micronesian Mathematics Program, Level 1, Children's Workbook.

    ERIC Educational Resources Information Center

    Gring, Carolyn

    This workbook for children was prepared especially to accompany the level 1 Micronesian Mathematics Program Teacher's Guide. It is to be used to check whether children have learned concepts taught by activities and activity cards. Work is provided for such concepts as color recognition, categorizing, counting, ordering, numeration, contrasting,…

  11. Transmembrane beta-barrel protein structure prediction

    NASA Astrophysics Data System (ADS)

    Randall, Arlo; Baldi, Pierre

    Transmembrane β-barrel (TMB) proteins are embedded in the outer membranes of mitochondria, Gram-negative bacteria, and chloroplasts. These proteins perform critical functions, including active ion-transport and passive nutrient intake. Therefore, there is a need for accurate prediction of secondary and tertiary structures of TMB proteins. A variety of methods have been developed for predicting the secondary structure and these predictions are very useful for constructing a coarse topology of TMB structure; however, they do not provide enough information to construct a low-resolution tertiary structure for a TMB protein. In addition, while the overall structural architecture is well conserved among TMB proteins, the amino acid sequences are highly divergent. Thus, traditional homology modeling methods cannot be applied to many putative TMB proteins. Here, we describe the TMBpro: a pipeline of methods for predicting TMB secondary structure, β-residue contacts, and finally tertiary structure. The tertiary prediction method relies on the specific construction rules that TMB proteins adhere to and on the predicted β-residue contacts to dramatically reduce the search space for the model building procedure.

  12. Level 1 Daq System for Kloe

    NASA Astrophysics Data System (ADS)

    Aloisio, A.; Cavaliere, S.; Cevenini, F.; Della Volpe, D.; Merola, L.; Anastasio, A.; Fiore, D. J.

    KLOE is a general purpose detector optimized to observe CP violation in K0 decays. This detector will be installed at the DAΦNE Φ-factory, in Frascati (Italy) and it is expected to run at the end of 1997. The KLOE DAQ system can be divided mainly into the front-end fast readout section (the Level 1 DAQ), the FDDI Switch and the processor farm. The total bandwidth requirement is estimated to be of the order of 50 Mbyte/s. In this paper, we describe the Level 1 DAQ section, which is based on custom protocols and hardware controllers, developed to achieve high data transfer rates and event building capabilities without software overhead.

  13. BTeV level 1 vertex trigger

    SciTech Connect

    Michael H.L.S. Wang

    2001-11-05

    BTeV is a B-physics experiment that expects to begin collecting data at the C0 interaction region of the Fermilab Tevatron in the year 2006. Its primary goal is to achieve unprecedented levels of sensitivity in the study of CP violation, mixing, and rare decays in b and c quark systems. In order to realize this, it will employ a state-of-the-art first-level vertex trigger (Level 1) that will look at every beam crossing to identify detached secondary vertices that provide evidence for heavy quark decays. This talk will briefly describe the BTeV detector and trigger, focus on the software and hardware aspects of the Level 1 vertex trigger, and describe work currently being done in these areas.

  14. ESA Swarm Mission - Level 1b Products

    NASA Astrophysics Data System (ADS)

    Tøffner-Clausen, Lars; Floberghagen, Rune; Mecozzi, Riccardo; Menard, Yvon

    2014-05-01

    Swarm, a three-satellite constellation to study the dynamics of the Earth's magnetic field and its interactions with the Earth system, has been launched in November 2013. The objective of the Swarm mission is to provide the best ever survey of the geomagnetic field and its temporal evolution, which will bring new insights into the Earth system by improving our understanding of the Earth's interior and environment. The Level 1b Products of the Swarm mission contain time-series of the quality screened, calibrated, corrected, and fully geo-localized measurements of the magnetic field intensity, the magnetic field vector (provided in both instrument and Earth-fixed frames), the plasma density, temperature, and velocity. Additionally, quality screened and pre-calibrated measurements of the nongravitational accelerations are provided. Geo-localization is performed by 24- channel GPS receivers and by means of unique, three head Advanced Stellar Compasses for high-precision satellite attitude information. The Swarm Level 1b data will be provided in daily products separately for each of the three Swarm spacecrafts. This poster will present detailed lists of the contents of the Swarm Level 1b Products and brief descriptions of the processing algorithms used in the generation of these data.

  15. Barrel view from southwest. Waterville Bridge, Spanning Swatara Creek ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Barrel view from southwest. - Waterville Bridge, Spanning Swatara Creek at Appalachian Trail (moved from Little Pine Creek at State Route 44, Waterville, Lycoming County), Green Point, Lebanon County, PA

  16. Barrel view from center span, looking east. Waterville Bridge, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Barrel view from center span, looking east. - Waterville Bridge, Spanning Swatara Creek at Appalachian Trail (moved from Little Pine Creek at State Route 44, Waterville, Lycoming County), Green Point, Lebanon County, PA

  17. Interior view, barrel vaulted store room opening from the south ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Interior view, barrel vaulted store room opening from the south side of the ground floors central east-west passage (PA-1622-A-51) looking northeast. - U. S. Naval Asylum, Biddle Hall, Gray's Ferry Avenue, Philadelphia, Philadelphia County, PA

  18. 3. BARREL VIEW, LOOKING DOWN LENGTH OF BRIDGE, SHOWING MAKER'S ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. BARREL VIEW, LOOKING DOWN LENGTH OF BRIDGE, SHOWING MAKER'S PLATE, DECORATIVE SCROLLWORK AND URN FINIALS ON NORTHEAST PORTAL - "Forder" Pratt Through Truss Bridge, Spanning Maumee River at County Route 73, Antwerp, Paulding County, OH

  19. Finite element analysis of the SDC barrel and endcap calorimeters

    SciTech Connect

    Guarino, V.; Hill, N.; Nasiakta, J.

    1992-03-11

    In designing the SCD barrel and endcap calorimeters, the inter-module connecting forces must be known in order to determine the required size and number of connecting links between modules, and in order to understand how individual modules will be affected by these forces when assembled to form a full barrel and endcap. The connecting forces were found by analyzing three-dimensional Finite Element Models of both the barrel and endcap. This paper is divided into two parts, the first part will describe in detail the results of the barrel analysis and the second part will describe the results obtained from the endcap analysis. A similar approach was used in constructing the models for both analysis.

  20. INTERIOR VIEW, DETAIL OF BARREL ROOF STRUCTURE, FACING NORTHEAST. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW, DETAIL OF BARREL ROOF STRUCTURE, FACING NORTHEAST. - Southern Branch of the National Home for Disabled Volunteer Soldiers, Building 13, Harris Avenue at its intersection of Black Avenue and Woodfin Street, Hampton, Hampton, VA

  1. 15. STOCKHAM PACKED SMALL FITTINGS IN BARRELS AND, AS EARLY ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    15. STOCKHAM PACKED SMALL FITTINGS IN BARRELS AND, AS EARLY AS 1919, TRANSPORTED THEM IN THEIR OWN PACKARD DELIVERY TRUCKS. - Stockham Pipe & Fittings Company, 4000 Tenth Avenue North, Birmingham, Jefferson County, AL

  2. 27 CFR 25.141 - Barrels and kegs.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... OF THE TREASURY LIQUORS BEER Marks, Brands, and Labels § 25.141 Barrels and kegs. (a) General... chapter. (Approved by the Office of Management and Budget under control number 1512-0474) (Sec. 201,...

  3. Theoretical limits on barreling of cylinders under axisymmetric compression

    NASA Astrophysics Data System (ADS)

    Fournier, Jorge L. Velez; Banerjee, Jayanta K.

    2012-06-01

    A theoretical analysis on three different geometrical limits during axial compression of a cylindrical workpiece under monotonically increasing external load is presented. Barreling is the main factor in metalworking industries, and it depends highly on several dimensional ratios such as initial aspect ratio (height/diameter), work/platen contact diameter ratios, etc. For a known material, barreling can be predicted from the mathematical formulations on the geometrical limits presented herein.

  4. Sodium Dichromate Barrel Landfill expedited response action proposal

    SciTech Connect

    Not Available

    1993-09-01

    The US Environmental Protection Agency (EPA) and Washington State Department of Ecology (Ecology) recommended that the US Department of Energy (DOE) prepare an expedited response action (ERA) for the Sodium Dichromate Barrel Landfill. The Sodium Dichromate Barrel Disposal Site was used in 1945 for disposal of crushed barrels. The site location is the sole waste site within the 100-IU-4 Operable Unit. The Waste Information Data System (WIDS 1992) assumes that the crushed barrels contained 1% residual sodium dichromate at burial time and that only buried crushed barrels are at the site. Burial depth is shallow since visual inspection finds numerous barrel debris on the surface. A non-time-critical ERA proposal includes preparation of an engineering evaluation and cost analysis (EE/CA) section. The EE/CA is a rapid, focused evaluation of available technologies using specific screening factors to assess feasibility, appropriateness, and cost. The ERA goal is to reduce the potential for any contaminant migration from the landfill to the soil column, groundwater, and Columbia River. Since the landfill is the only waste site within the operable unit, the ERA will present a final remediation of the 100-IU-4 operable unit.

  5. Composting barrel for sustainable organic waste management in Bangladesh.

    PubMed

    Moqsud, Md Azizul; Bushra, Quazi Sifat; Rahman, M H

    2011-12-01

    To ensure quick and uniform aerobic stabilization of biowaste through domestic composting and to prevent malodorous emissions, two modifications were made to a conventional steel barrel composter by: (1) providing 0.0125 m diameter openings throughout the sides and (2) placing a 0.0254 m diameter perforated polyvinyl chloride (PVC) pipe in the middle portion of the barrel. The volume of composting waste before modification of the composting barrel was 40% of the original volume and it was 70%, 4 weeks following the modifications. In addition, the nutrients in the compost were found to be in a more suitable range after modification of the composting barrel. The carbon-nitrogen ratio (C/N) of the compost was in the ideal range of 11-15 in the modified composting reactor but it was quite high (24-25) in the conventional barrel. This modified barrel composting plant proved to be an efficient, eco-friendly, cost-effective solution for the management of organic solid waste materials in developing and technologically less sophisticated countries such as Bangladesh. PMID:20870692

  6. Atlas Mountains

    NASA Technical Reports Server (NTRS)

    2002-01-01

    These are the Anti-Atlas Mountains, part of the Atlas Mountain range in southern Morocco, Africa. The region contains some of the world's largest and most diverse mineral resources, most of which are still untouched. This image was acquired by Landsat 7's Enhanced Thematic Mapper plus (ETM+) sensor on June 22, 2001. This is a false-color composite image made using shortwave infrared, infrared, and red wavelengths. Image provided by the USGS EROS Data Center Satellite Systems Branch.

  7. Aroma potential of oak battens prepared from decommissioned oak barrels.

    PubMed

    Li, Sijing; Crump, Anna M; Grbin, Paul R; Cozzolino, Daniel; Warren, Peter; Hayasaka, Yoji; Wilkinson, Kerry L

    2015-04-01

    During barrel maturation, volatile compounds are extracted from oak wood and impart aroma and flavor to wine, enhancing its character and complexity. However, barrels contain a finite pool of extractable material, which diminishes with time. As a consequence, most barrels are decommissioned after 5 or 6 years. This study investigated whether or not decommissioned barrels can be "reclaimed" and utilized as a previously untapped source of quality oak for wine maturation. Oak battens were prepared from staves of decommissioned French and American oak barrels, and their composition analyzed before and after toasting. The oak lactone glycoconjugate content of untoasted reclaimed oak was determined by liquid chromatography-tandem mass spectrometry, while the concentrations of cis- and trans-oak lactone, guaiacol, 4-methlyguaiacol, vanillin, eugenol, furfural, and 5-methylfurfural present in toasted reclaimed oak were determined by gas chromatography-mass spectrometry. Aroma potential was then evaluated by comparing the composition of reclaimed oak with that of new oak. Comparable levels of oak lactone glycoconjugates and oak volatiles were observed, demonstrating the aroma potential of reclaimed oak and therefore its suitability as a raw material for alternative oak products, i.e., chips or battens, for the maturation of wine. The temperature profiles achieved during toasting were also measured to evaluate the viability of any yeast or bacteria present in reclaimed oak. PMID:25771908

  8. The structure of the β-barrel assembly machinery complex

    PubMed Central

    Bakelar, Jeremy; Buchanan, Susan K.; Noinaj, Nicholas

    2016-01-01

    β-barrel outer membrane proteins (OMPs) are found within the outer membranes (OM) of Gram-negative bacteria and are essential for nutrient import, signaling, and adhesion. While the exact mechanism is unknown, a 200 kDa five component complex called the β-barrel assembly machinery (BAM) complex has been implicated in the biogenesis of OMPs. Here, we report the structure of the BAM complex from E. coli, revealing that binding of the accessory proteins BamCDE modulates the conformation of BamA, the central component of the complex, which may regulate the function of the BAM complex. The periplasmic domain of BamA was found in a closed state that prevents access to the barrel lumen from the periplasm, indicating substrate OMPs likely do not enter the barrel during biogenesis. Further, the first eight strands of the β-barrel domain undergo an unprecedented conformational shift leading to opening of the exit pore and rearrangement at the lateral gate. PMID:26744406

  9. DAQ hardware and software development for the ATLAS Pixel Detector

    NASA Astrophysics Data System (ADS)

    Stramaglia, Maria Elena

    2016-07-01

    In 2014, the Pixel Detector of the ATLAS experiment has been extended by about 12 million pixels thanks to the installation of the Insertable B-Layer (IBL). Data-taking and tuning procedures have been implemented along with newly designed readout hardware to support high bandwidth for data readout and calibration. The hardware is supported by an embedded software stack running on the readout boards. The same boards will be used to upgrade the readout bandwidth for the two outermost barrel layers of the ATLAS Pixel Detector. We present the IBL readout hardware and the supporting software architecture used to calibrate and operate the 4-layer ATLAS Pixel Detector. We discuss the technical implementations and status for data taking, validation of the DAQ system in recent cosmic ray data taking, in-situ calibrations, and results from additional tests in preparation for Run 2 at the LHC.

  10. Cholinergic signals in mouse barrel cortex during active whisker sensing.

    PubMed

    Eggermann, Emmanuel; Kremer, Yves; Crochet, Sylvain; Petersen, Carl C H

    2014-12-11

    Internal brain states affect sensory perception, cognition, and learning. Many neocortical areas exhibit changes in the pattern and synchrony of neuronal activity during quiet versus active behaviors. Active behaviors are typically associated with desynchronized cortical dynamics. Increased thalamic firing contributes importantly to desynchronize mouse barrel cortex during active whisker sensing. However, a whisking-related cortical state change persists after thalamic inactivation, which is mediated at least in part by acetylcholine, as we show here by using whole-cell recordings, local pharmacology, axonal calcium imaging, and optogenetic stimulation. During whisking, we find prominent cholinergic signals in the barrel cortex, which suppress spontaneous cortical activity. The desynchronized state of barrel cortex during whisking is therefore driven by at least two distinct signals with opposing functions: increased thalamic activity driving glutamatergic excitation of the cortex and increased cholinergic input suppressing spontaneous cortical activity.

  11. Treatment Method for Fermi Barrel Sodium Metal Residues

    SciTech Connect

    Steven R. Sherman; Collin J. Knight

    2005-06-01

    Fermi barrels are 55-gallon drums that once contained bulk sodium metal from the shutdown Fermi 1 breeder reactor facility, and now contain residual sodium metal and other sodium/air reaction products. This report provides a residual sodium treatment method and proposed quality assurance steps that will ensure that all residual sodium is deactivated and removed from the Fermi barrels before disposal. The treatment method is the application of humidified carbon dioxide to the residual sodium followed by a water wash. The experimental application of the treatment method to six Fermi barrels is discussed, and recommendations are provided for further testing and evaluation of the method. Though more testing would allow for a greater refinement of the treatment technique, enough data has been gathered from the tests already performed to prove that 100% compliance with stated waste criteria can be achieved.

  12. Small arms mini-fire control system: fiber-optic barrel deflection sensor

    NASA Astrophysics Data System (ADS)

    Rajic, S.; Datskos, P.; Lawrence, W.; Marlar, T.; Quinton, B.

    2012-06-01

    Traditionally the methods to increase firearms accuracy, particularly at distance, have concentrated on barrel isolation (free floating) and substantial barrel wall thickening to gain rigidity. This barrel stiffening technique did not completely eliminate barrel movement but the problem was significantly reduced to allow a noticeable accuracy enhancement. This process, although highly successful, came at a very high weight penalty. Obviously the goal would be to lighten the barrel (firearm), yet achieve even greater accuracy. Thus, if lightweight barrels could ultimately be compensated for both their static and dynamic mechanical perturbations, the result would be very accurate, yet significantly lighter weight, weapons. We discuss our development of a barrel reference sensor system that is designed to accomplish this ambitious goal. Our optical fiber-based sensor monitors the barrel muzzle position and autonomously compensates for any induced perturbations. The reticle is electronically adjusted in position to compensate for the induced barrel deviation in real time.

  13. Small arms mini-fire control system: fiber-optic barrel deflection sensor

    SciTech Connect

    Rajic, Slobodan; Datskos, Panos G

    2012-01-01

    Traditionally the methods to increase firearms accuracy, particularly at distance, have concentrated on barrel isolation (free floating) and substantial barrel wall thickening to gain rigidity. This barrel stiffening technique did not completely eliminate barrel movement but the problem was significantly reduced to allow a noticeable accuracy enhancement. This process, although highly successful, came at a very high weight penalty. Obviously the goal would be to lighten the barrel (firearm), yet achieve even greater accuracy. Thus, if lightweight barrels could ultimately be compensated for both their static and dynamic mechanical perturbations, the result would be very accurate, yet significantly lighter weight, weapons. We discuss our development of a barrel reference sensor system that is designed to accomplish this ambitious goal. Our optical fiber-based sensor monitors the barrel muzzle position and autonomously compensates for any induced perturbations. The reticle is electronically adjusted in position to compensate for the induced barrel deviation in real time.

  14. Single wound produced by simultaneous discharge of both shells from a double-barrel shotgun.

    PubMed

    Medich, M G; Cohle, S D; Burritt, M; Davison, P

    1990-03-01

    We present the case of a man who was killed by simultaneous discharge of both barrels of a double-barrel shotgun. Externally, there was a single wound simulating a wound made by a discharge of a single barrel. Test-firing of the shotgun against cloth, paper, and naugahyde targets revealed defects similar in shape to the wound in the victim. Simultaneous discharge of both barrels from a double-barrel shotgun may simulate the wound made by discharge of a single barrel.

  15. 1. INTERIOR VIEW WITH NAVE, BARREL VAULTED SOLEA, ICONOSTAS WITH ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. INTERIOR VIEW WITH NAVE, BARREL VAULTED SOLEA, ICONOSTAS WITH ICON AND SANCTUARY. IN ARCH ABOVE THE SANCTUARY IS THE TABLE OF ABRAHAM. THE ICONOSTAS INCLUDES ICONS OF THE ARCHANGEL MICHAEL, THE HOLY TRINITY, MOTHER OF GOD HOLDING THE CHRIST CHILD, JESUS. - Holy Trinity-Holy Cross Greek Orthodox Church, 200 Nineteenth Street South, Birmingham, Jefferson County, AL

  16. 8. Generator Barrel and Shaft of Unit 1, view to ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    8. Generator Barrel and Shaft of Unit 1, view to the northwest, with turbine shaft and thrust bearing visible in upper center of photograph. - Washington Water Power Clark Fork River Noxon Rapids Hydroelectric Development, Powerhouse, South bank of Clark Fork River at Noxon Rapids, Noxon, Sanders County, MT

  17. 4. AERIAL 'BARREL' SHOT OF THE PATH TRANSIT SYSTEM BRIDGE, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    4. AERIAL 'BARREL' SHOT OF THE PATH TRANSIT SYSTEM BRIDGE, LOOKING SOUTHEAST TOWARDS JERSEY CITY. TO THE RIGHT ARE THE NEWARK TURNPIKE AND THE CONRAIL BRIDGE (HAER No. NJ-43). THE PULASKI SKYWAY (HAER No. NJ-34) IS IN THE BACKGROUND TO THE RIGHT - Path Transit System Bridge, Spanning Hackensack River, Kearny, Hudson County, NJ

  18. 11. DETAIL, ARCH BARREL AND RING, FROM SOUTHWEST, SHOWING CUT ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    11. DETAIL, ARCH BARREL AND RING, FROM SOUTHWEST, SHOWING CUT STONE MASONRY RINGSTONE VOUSSOIRS WITH '1902' KEYSTONE, CONCRETE PARAPET, CONCRETE APRON AT BASE OF BRIDGE UNDER ARCH, AND PORTION OF TIMBER GRILLAGE - Boston Street Bridge, Spanning Harris Creek Sewer at Boston Street, Baltimore, Independent City, MD

  19. 13. Interior view, grain tanks (bins). Barrel view of overhead ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    13. Interior view, grain tanks (bins). Barrel view of overhead (fill) conveyor gallery bridge extending through tops of tanks just below roofs. Grain tripper straddles belt conveyor at mid-view. - Saint Anthony Elevator No. 3, 620 Malcom Avenue, Southeast, Minneapolis, Hennepin County, MN

  20. 14. Interior view, grain tanks (bins). Barrel view of tunnel ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    14. Interior view, grain tanks (bins). Barrel view of tunnel for load-out belt conveyor system located below tanks. Square, numbered spouts gravity-feed grain from overhead bins onto belt. - Saint Anthony Elevator No. 3, 620 Malcom Avenue, Southeast, Minneapolis, Hennepin County, MN

  1. VIEW, LOOKING SOUTHWEST OF GOLD AMALGAMATION ROOM, SHOWING AMALGAMATION BARREL ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    VIEW, LOOKING SOUTHWEST OF GOLD AMALGAMATION ROOM, SHOWING AMALGAMATION BARREL AT CENTER FOREGROUND, BULLION FURNACE IN LARGE HOOD BEHIND IT, AND GOLD RETORT IN BACKGROUND HOOD. NOTE OVERHEAD MONORAIL FOR MATERIALS HANDLING. - Shenandoah-Dives Mill, 135 County Road 2, Silverton, San Juan County, CO

  2. A 'barrel shot' looking down the track and through the ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    A 'barrel shot' looking down the track and through the 114'- 8-1/2' south thru truss approach span, showing pole line supported across top of steal superstructure. The 364' - 0-1/4' swing span over river has been used by various Railroads for a period of 90 years. - Bridgeport Swing Span Bridge, Spanning Tennessee River, Bridgeport, Jackson County, AL

  3. 27 CFR 25.144 - Rebranding barrels and kegs.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Marks, Brands, and Labels § 25.144 Rebranding barrels and... permanently remove or durably cover the original marks and brands after notifying the appropriate TTB officer... the original marks and brands if the brewer: (1) Adopts a trade name substantially identical to...

  4. 27 CFR 25.144 - Rebranding barrels and kegs.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Marks, Brands, and Labels § 25.144 Rebranding barrels and... permanently remove or durably cover the original marks and brands after notifying the appropriate TTB officer... the original marks and brands if the brewer: (1) Adopts a trade name substantially identical to...

  5. New results in meson spectroscopy from the crystal barrel experiment

    SciTech Connect

    Meyer, C.A.

    1994-04-01

    Recent observations by the Crystal Barrel experiment of two scalar resonances, f{sub o}(1365) and a{sub o}(1450) have allowed the authors to clarify the members of the scalar nonet. In addition, a third scalar, f{sub o}(1500), appears to be supernumerary, and is a candidate for the scalar glueball expected near 1500 MeV.

  6. 9. Generator Barrel and Rotor of Unit 1, view to ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    9. Generator Barrel and Rotor of Unit 1, view to the southeast, showing part of the rotor and generator coils along top of photograph and southeast entry stairwell and doors in lower center of photograph. - Washington Water Power Clark Fork River Noxon Rapids Hydroelectric Development, Powerhouse, South bank of Clark Fork River at Noxon Rapids, Noxon, Sanders County, MT

  7. The ATLAS level 2 trigger supervisor.

    SciTech Connect

    Abolins, M.; Blair, R. E.; Dawson, J. W.; Owen, D.; Pope, B. G.; Schlereth, J. L.; Weber dos Santos, R.

    1997-04-03

    This paper presents an overview of the hardware and software proposed for the ATLAS level 2 Trigger ROI Builder/Supervisor. The essential requirements of this system are that it operate at the design Level 1 Trigger rate of 100kHz and that it support the technical requirements of the architectures suggested for the ATLAS Level 2 Trigger. Commercial equipment and software support are used to the maximum extent possible, with support from dedicated hardware. Timing requirements and latencies are discussed and simulation results are presented.

  8. Simulation and reconstruction of the PANDA Barrel DIRC

    NASA Astrophysics Data System (ADS)

    Dzhygadlo, R.; Gerhardt, A.; Go¨tzen, K.; Hohler, R.; Kalicy, G.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Dodokhov, V. Kh.; Britting, A.; Eyrich, W.; Lehmann, A.; Uhlig, F.; Düren, M.; Fo¨hl, K.; Hayrapetyan, A.; Kro¨ck, B.; Merle, O.; Rieke, J.; Cowie, E.; Keri, T.; Montgomery, R.; Rosner, G.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Sfienti, C.; Thiel, M.; Bühler, P.; Gruber, L.; Marton, J.; Suzuki, K.

    2014-12-01

    Hadronic particle identification (PID) in the barrel region of the PANDA experiment at the new Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt will be provided by a DIRC (Detection of Internally Reflected Cherenkov light) counter. To optimize the performance and reduce the detector cost, detailed simulations of different design elements, such as the width of the radiators, the shape of the expansion volume, and the type of focusing system, were performed using Geant. Custom reconstruction algorithms were developed to match the detector geometry. We will discuss the single photon resolution and photon yield as well as the PID performance for the Barrel DIRC baseline design and several detector design options.

  9. NASA Marshall Space Flight Center Barrel-Shaped Asymmetrical Capacitor

    NASA Technical Reports Server (NTRS)

    Campbell, J. W.; Carruth, M. R.; Edwards, D. L.; Finchum, A.; Maxwell, G.; Nabors, S.; Smalley, L.; Huston, D.; Ila, D.; Zimmerman, R.

    2004-01-01

    The NASA Barrel-Shaped Asymmetrical Capacitor (NACAP) has been extensively tested at NASA Marshall Space Flight Center and the National Space Science and Technology Center. Trichel pulse emission was first discovered here. The NACAP is a magnetohydrodynamic device for electric propulsion. In air it requires no onboard propellant nor any moving parts. No performance was observed in hard vacuum. The next step shall be optimizing the technology for future applications.

  10. [Easily closed gun-barrel enterostomy. A new technique].

    PubMed

    Belliard, R; Saric, J; Dost, C; Vergne, P; Perissat, J

    1982-05-15

    The availability of continuous low rate enteral and parenteral feeding has enlarged the indications of enterostomy, notably in patients with multiple operations. However, closing an enterostomy, which may be high up in the small bowel, rises technical problems and is not always without risk. In this study a new technique of gun-barrel enterostomy easily closed with automatic sutures and without reopening of the abdominal wall is presented.

  11. Scanning and Measuring Device for Diagnostic of Barrel Bore

    NASA Astrophysics Data System (ADS)

    Marvan, Ales; Hajek, Josef; Vana, Jan; Dvorak, Radim; Drahansky, Martin; Jankovych, Robert; Skvarek, Jozef

    The article discusses the design, mechanical design, electronics and software for robot diagnosis of barrels with caliber of 120 mm to 155 mm. This diagnostic device is intended primarily for experimental research and verification of appropriate methods and technologies for the diagnosis of the main bore guns. Article also discusses the design of sensors and software, the issue of data processing and image reconstruction obtained by scanning of the surface of the bore.

  12. Mechanical property of a TIM-barrel protein.

    PubMed

    Kobayashi, N; Yamato, T; Go, N

    1997-05-01

    The mechanical response of a TIM-barrel protein to an applied pressure has been studied. We generated structures under an applied pressure by assuming the volume change to be a linear function of normal mode variables. By Delaunay tessellation, the space occupied by protein atoms is divided uniquely into tetrahedra, whose four vertices correspond to atomic positions. Based on the atoms that define them, the resulting Delaunay tetrahedra are classified as belonging to various secondary structures in the protein. The compressibility of various regions identified with respect to secondary structural elements in this protein is obtained from volume changes of respective regions in two structures with and without an applied pressure. We found that the beta barrel region located at the core of the protein is quite soft. The interior of the beta barrel, occupied by side chains of beta strands, is the softest. The helix, strand, and loop segments themselves are extremely rigid, while the regions existing between these secondary structural elements are soft. These results suggest that the regions between secondary structural elements play an important role in protein dynamics. Another aspect of tetrahedra, referred to as bond distance, is introduced to account for rigidities of the tetrahedra. Bond distance is a measure of separation of the atoms of a tetrahedron in terms of number of bonds along the polypeptide chain or side chains. Tetrahedra with longer bond distances are found to be softer on average. From this behavior, we derive a simple empirical equation, which well describes the compressibilities of various regions.

  13. Development and Critical Period Plasticity of the Barrel Cortex

    PubMed Central

    Erzurumlu, Reha S.; Gaspar, Patricia

    2012-01-01

    In primary sensory neocortical areas of the mammals, the distribution of sensory receptors is mapped with topographic precision and amplification in proportion to the peripheral receptor density. The visual, somatosensory and auditory cortical maps are established during a critical period in development. Throughout this window in time, the developing cortical maps are vulnerable to deleterious effects of sense organ damage or sensory deprivation. The rodent barrel cortex offers an invaluable model system to investigate mechanisms underlying the formation of topographic maps and their plasticity during development. Five rows of mystacial vibrissa (whisker) follicles on the snout and an array of sinus hairs are represented by layer IV neural modules (“barrels”) and thalamocortical axon terminals in the primary somatosensory cortex. Perinatal damage to the whiskers or the sensory nerve innervating them irreversibly alters the structural organization of the barrels. Earlier studies emphasized the role of sensory periphery in dictating whisker-specific brain maps and patterns. Recent advances in molecular genetics and analyses of genetically altered mice allow new insights into neural pattern formation in the neocortex and the mechanisms underlying critical period plasticity. Here we review the development and patterning of the barrel cortex and the critical period plasticity. PMID:22607000

  14. Neural coding in barrel cortex during whisker-guided locomotion

    PubMed Central

    Sofroniew, Nicholas James; Vlasov, Yurii A; Andrew Hires, Samuel; Freeman, Jeremy; Svoboda, Karel

    2015-01-01

    Animals seek out relevant information by moving through a dynamic world, but sensory systems are usually studied under highly constrained and passive conditions that may not probe important dimensions of the neural code. Here, we explored neural coding in the barrel cortex of head-fixed mice that tracked walls with their whiskers in tactile virtual reality. Optogenetic manipulations revealed that barrel cortex plays a role in wall-tracking. Closed-loop optogenetic control of layer 4 neurons can substitute for whisker-object contact to guide behavior resembling wall tracking. We measured neural activity using two-photon calcium imaging and extracellular recordings. Neurons were tuned to the distance between the animal snout and the contralateral wall, with monotonic, unimodal, and multimodal tuning curves. This rich representation of object location in the barrel cortex could not be predicted based on simple stimulus-response relationships involving individual whiskers and likely emerges within cortical circuits. DOI: http://dx.doi.org/10.7554/eLife.12559.001 PMID:26701910

  15. Rapid, learning-induced inhibitory synaptogenesis in murine barrel field

    PubMed Central

    Jasinska, M.; Siucinska, E.; Cybulska-Klosowicz, A.; Pyza, E.; Furness, D.N.; Kossut, M.; Glazewski, S.

    2010-01-01

    The structure of neurones changes during development and in response to injury or alteration in sensory experience. Changes occur in the number, shape and dimensions of dendritic spines together with their synapses. However, precise data on these changes in response to learning are sparse. Here, we show using quantitative transmission electron microscopy that a simple form of learning involving mystacial vibrissae results in about 70% increase in the density of inhibitory synapses on spines of neurones located in layer IV barrels that represent the stimulated vibrissae. The spines contain one asymmetrical (excitatory) and one symmetrical (inhibitory) synapse (double-synapse spines) and their density increases 3-fold due to learning with no apparent change in the density of asymmetrical synapses. This effect seems to be specific for learning as pseudoconditioning (where the conditioned and unconditioned stimuli are delivered at random) does not lead to the enhancement of symmetrical synapses, but instead results in an up-regulation of asymmetrical synapses on spines. Symmetrical synapses of cells located in barrels receiving the conditioned stimulus show also a greater concentration of γ-amino-butyric acid (GABA) in their presynaptic terminals. These results indicate that the immediate effect of classical conditioning in the ‘conditioned’ barrels is rapid, pronounced and inhibitory. PMID:20089926

  16. Weakly Stable Regions and Protein-Protein Interactions in Beta-Barrel Membrane Proteins

    PubMed Central

    Naveed, Hammad; Liang, Jie

    2014-01-01

    We briefly discuss recent progress in computational characterization of the sequence and structural properties of β-barrel membrane properties. We discuss the emerging concept of weakly stable regions in β-barrel membrane proteins, computational methods to identify these regions and mechanisms adopted by β-barrel membrane proteins in nature to stabilize them. We further discuss computational methods to identify protein-protein interactions in β-barrel membrane proteins and recent experimental studies that aim at altering the biophysical properties including oligomerization state and stability of β-barrel membrane proteins based on the emerging organization principles of these proteins from recent computational studies. PMID:23713778

  17. The ATLAS Diamond Beam Monitor: Luminosity detector at the LHC

    NASA Astrophysics Data System (ADS)

    Schaefer, D. M.

    2016-07-01

    After the first three years of the LHC running, the ATLAS experiment extracted its pixel detector system to refurbish and re-position the optical readout drivers and install a new barrel layer of pixels. The experiment has also taken advantage of this access to install a set of beam monitoring telescopes with pixel sensors, four each in the forward and backward regions. These telescopes are based on chemical vapor deposited (CVD) diamond sensors to survive in this high radiation environment without needing extensive cooling. This paper describes the lessons learned in construction and commissioning of the ATLAS Diamond Beam Monitor (DBM). We show results from the construction quality assurance tests and commissioning performance, including results from cosmic ray running in early 2015.

  18. Silicon photomultiplier characterization for the GlueX barrel calorimeter

    SciTech Connect

    F. Barbosa, J.E. McKisson, J. McKisson, Y. Qiang, E. Smith, C. Zorn

    2012-12-01

    GlueX is a new detector being constructed at Jefferson Laboratory to study gluonic excitations and confinement via the detection of exotic meson states. The hermetic detector includes a barrel calorimeter where the photodetectors must operate in a high magnetic field exceeding 0.5 T. After extensive tests with a variety of sensors, the chosen photodetector will be a custom silicon photomultiplier (SiPM) array manufactured by Hamamatsu Corporation. This paper will focus on the characterization of the first 80 production samples of these SiPMs, including dark rate, photodetection efficiency (PDE), crosstalk, response uniformity and radiation tolerance.

  19. Theoretical Exploration of Barrel-Shaped Drops on Cactus Spines.

    PubMed

    Luo, Cheng

    2015-11-01

    To survive an arid environment, desert cacti are capable of harvesting water from fog by transporting condensed water drops using their spines. Cactus spines have a conical shape. In this work, on the basis of the difference of liquid pressure, a new theoretical model has been developed for a barrel-shaped liquid drop on a conical wire. This model is further simplified to interpret the effects of contact angles, conical angle, surface microgrooves, and gravity on the drop movement along a cactus spine.

  20. Innovative active control of gun barrels using smart materials

    NASA Astrophysics Data System (ADS)

    Mattice, Michael S.; LaVigna, Chris

    1997-06-01

    The accuracy of stabilized, turreted gun systems like the 120mm gun on the M1A2 Abrams tank and the 30mm gun on the Apache helicopter are limited by, among other things, structural flexure of the gun barrel and support structure. An advanced actuation system based on piezoelectric translators and an optical fiber strain sensing system are described in conjunction with a rapid prototyping workstation for the design of distributed parameter control systems to actively minimize the effects of vibrations caused by traversing rough terrain or weapon firing.

  1. Reversible man-in-the-barrel syndrome in myasthenia gravis

    PubMed Central

    Shah, Poornima A; Wadia, Pettarusp Murzban

    2016-01-01

    Man-in-the-barrel syndrome (MBS) is an uncommon presentation due to bilateral, predominantly proximal muscle weakness that has not been described to be associated with myasthenia gravis. We describe a case of myasthenia gravis presenting as MBS. Additionally, he had significant wasting of the deltoids bilaterally with fibrillations on electromyography (EMG) at rest and brief duration (3-6 ms) bi/triphasic motor unit potentials (MUPs) on submaximal effort apart from a decremental response on repetitive nerve stimulation (RNS) at 2 Hz. While electrophysiology is an important tool in the diagnosis of myasthenia gravis, pathological EMG patterns do not exclude the diagnosis of myasthenia gravis. PMID:27011638

  2. Theoretical Exploration of Barrel-Shaped Drops on Cactus Spines.

    PubMed

    Luo, Cheng

    2015-11-01

    To survive an arid environment, desert cacti are capable of harvesting water from fog by transporting condensed water drops using their spines. Cactus spines have a conical shape. In this work, on the basis of the difference of liquid pressure, a new theoretical model has been developed for a barrel-shaped liquid drop on a conical wire. This model is further simplified to interpret the effects of contact angles, conical angle, surface microgrooves, and gravity on the drop movement along a cactus spine. PMID:26473466

  3. Report to users of ATLAS

    SciTech Connect

    Ahmad, I.; Glagola, B.

    1995-05-01

    This report contains discussing in the following areas: Status of the Atlas accelerator; highlights of recent research at Atlas; concept for an advanced exotic beam facility based on Atlas; program advisory committee; Atlas executive committee; and Atlas and ANL physics division on the world wide web.

  4. Sensitivity Analysis for Hierarchical Models Employing "t" Level-1 Assumptions.

    ERIC Educational Resources Information Center

    Seltzer, Michael; Novak, John; Choi, Kilchan; Lim, Nelson

    2002-01-01

    Examines the ways in which level-1 outliers can impact the estimation of fixed effects and random effects in hierarchical models (HMs). Also outlines and illustrates the use of Markov Chain Monte Carlo algorithms for conducting sensitivity analyses under "t" level-1 assumptions, including algorithms for settings in which the degrees of freedom at…

  5. MOPITT V7 Level 1 & Level 2 Release Announcement

    Atmospheric Science Data Center

    2016-08-02

    MOPITT V7 Level 1 & Level 2 Release Announcement Wednesday, August 10, 2016 ... Infrared Radiances) •   MOP01    - MOPITT Level 1 Radiances   Several significant retrieval algorithm and product ... Featured improvements in the V7 retrieval products include (1) the representation of changing atmospheric concentrations of N2O, (2) ...

  6. ATLAS F MISSILE FIELDS IN THE UNITED STATES, ATLAS F ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    ATLAS F MISSILE FIELDS IN THE UNITED STATES, ATLAS F- TEXAS RING OF TWELVE - Dyess Air Force Base, Atlas F Missle Site S-8, Approximately 3 miles east of Winters, 500 feet southwest of Highway 177, Winters, Runnels County, TX

  7. Tests of Local Hadron Calibration Approaches in ATLAS Combined Beam Tests

    NASA Astrophysics Data System (ADS)

    Grahn, Karl-Johan; Kiryunin, Andrey; Pospelov, Guennadi; ATLAS Calorimeter Group

    2011-04-01

    Three ATLAS calorimeters in the region of the forward crack at |η| = 3.2 in the nominal ATLAS setup and a typical section of the two barrel calorimeters at |η| = 0.45 of ATLAS have been exposed to combined beam tests with single electrons and pions. Detailed shower shape studies of electrons and pions with comparisons to various Geant4 based simulations utilizing different physics lists are presented for the endcap beam test. The local hadron calibration approach as used in the full Atlas setup has been applied to the endcap beam test data. An extension of it using layer correlations has been tested with the barrel test beam data. Both methods utilize modular correction steps based on shower shape variables to correct for invisible energy inside the reconstructed clusters in the calorimeters (compensation) and for lost energy deposits outside of the reconstructed clusters (dead material and out-of-cluster deposits). Results for both methods and comparisons to Monte Carlo simulations are presented.

  8. Two distinct mechanisms for TIM barrel prenyltransferases in bacteria.

    PubMed

    Doud, Emma H; Perlstein, Deborah L; Wolpert, Manuel; Cane, David E; Walker, Suzanne

    2011-02-01

    The reactions of two bacterial TIM barrel prenyltransferases (PTs), MoeO5 and PcrB, were explored. MoeO5, the enzyme responsible for the first step in moenomycin biosynthesis, catalyzes the transfer of farnesyl to 3-phosphoglyceric acid (3PG) to give a product containing a cis-allylic double bond. We show that this reaction involves isomerization to a nerolidyl pyrophosphate intermediate followed by bond rotation prior to attack by the nucleophile. This mechanism is unprecedented for a prenyltransferase that catalyzes an intermolecular coupling. We also show that PcrB transfers geranyl and geranylgeranyl groups to glycerol-1-phosphate (G1P), making it the first known bacterial enzyme to use G1P as a substrate. Unlike MoeO5, PcrB catalyzes prenyl transfer without isomerization to give products that retain the trans-allylic bond of the prenyl donors. The TIM barrel family of PTs is unique in including enzymes that catalyze prenyl transfer by distinctly different reaction mechanisms.

  9. Calibration of the high resolution spectrometer barrel calorimeter at PEP

    SciTech Connect

    Loos, J.S.

    1983-01-01

    The High-Resolution Spectrometer (HRS) is a general-purpose detector for the study of high-energy electron-positron collisions. The HRS has been in data-taking operation since early 1982. This report covers the calibration of the barrel shower counter system. The barrel system consists of 40 modules placed in a circular arch having a mean radius of 2.1 m. Each module covers an azimuthal wedge of 9 degrees and has an active length of 3.0 m. There are three independent sections: (1) an inner sandwich of Pb and scintillator (NE110) of thickness 3 r.1., (2) a plane of 14 proportional wire cells equipped with charge-division read-out, and (3) an outer sandwich of Pb and scintillator (NE114) of thickness 8. r. 1. The light from the sandwich section is collected at both ends and is passed through long acrylic pipes (5 cm diameter, 162 cm long) to photomultipliers (Amperex XP2230) mounted outside the magnet steel.

  10. Agriculture, Levels 1-4. Agriculture & Commercial Horticulture, Levels 1-4. Commercial Horticulture, Levels 1-3. Environmental Conservation, Levels 2-4. National Vocational Qualifications.

    ERIC Educational Resources Information Center

    Business and Technology Education Council, London (England).

    Britain's National Vocational Qualifications (NVQs) are work qualifications that measure what an employee or potential employee can do as well as how much he or she knows and understands about a particular job. Used as written proof of usable workplace skills that can be put to profitable use by an employer, NVQs range from basic Level 1, for…

  11. An analysis of increasing the size of the strategic petroleum reserve to one billion barrels

    SciTech Connect

    Not Available

    1990-01-01

    The Department of Energy's Office of Energy Emergency Policy and Evaluation requested that the Energy Information Administration complete an analysis of the proposed expansion in the Strategic Petroleum Reserve (SPR) from its currently planned size of 750 million barrels to 1000 million barrels. Because the SPR contains only 580 million barrels at this point in time, the benefits and costs of increasing the SPR from 600 to 750 million barrels were also estimated. This report documents the assumptions, methodology, and results of the analysis. 17 figs., 15 tabs.

  12. Drag Measurements of a Protruding .50-caliber Machine Gun with Barrel Jacket Removed

    NASA Technical Reports Server (NTRS)

    Luoma, Arvo A.

    1943-01-01

    Tests were made in 8-ft high-speed wind tunnel to determine the drag reduction possible by eliminating the barrel jacket of a protruding 50-caliber aircraft gun. It was found that the drag of a standard aircraft gun protruding into the air stream at right angles to the flow can be reduced by 23% by discarding the barrel jacket. At 300 mph and sea-level conditions, this amounts to a decrease in drag of from 83 to 64 pounds. A rough surface finish on the barrel was found to have no adverse effects on the drag of the barrel, the drag being actually less at high Mach Numbers.

  13. Study of surface properties of ATLAS12 strip sensors and their radiation resistance

    NASA Astrophysics Data System (ADS)

    Mikestikova, M.; Allport, P. P.; Baca, M.; Broughton, J.; Chisholm, A.; Nikolopoulos, K.; Pyatt, S.; Thomas, J. P.; Wilson, J. A.; Kierstead, J.; Kuczewski, P.; Lynn, D.; Hommels, L. B. A.; Ullan, M.; Bloch, I.; Gregor, I. M.; Tackmann, K.; Hauser, M.; Jakobs, K.; Kuehn, S.; Mahboubi, K.; Mori, R.; Parzefall, U.; Clark, A.; Ferrere, D.; Sevilla, S. Gonzalez; Ashby, J.; Blue, A.; Bates, R.; Buttar, C.; Doherty, F.; McMullen, T.; McEwan, F.; O'Shea, V.; Kamada, S.; Yamamura, K.; Ikegami, Y.; Nakamura, K.; Takubo, Y.; Unno, Y.; Takashima, R.; Chilingarov, A.; Fox, H.; Affolder, A. A.; Casse, G.; Dervan, P.; Forshaw, D.; Greenall, A.; Wonsak, S.; Wormald, M.; Cindro, V.; Kramberger, G.; Mandić, I.; Mikuž, M.; Gorelov, I.; Hoeferkamp, M.; Palni, P.; Seidel, S.; Taylor, A.; Toms, K.; Wang, R.; Hessey, N. P.; Valencic, N.; Hanagaki, K.; Dolezal, Z.; Kodys, P.; Bohm, J.; Stastny, J.; Bevan, A.; Beck, G.; Milke, C.; Domingo, M.; Fadeyev, V.; Galloway, Z.; Hibbard-Lubow, D.; Liang, Z.; Sadrozinski, H. F.-W.; Seiden, A.; To, K.; French, R.; Hodgson, P.; Marin-Reyes, H.; Parker, K.; Jinnouchi, O.; Hara, K.; Sato, K.; Hagihara, M.; Iwabuchi, S.; Bernabeu, J.; Civera, J. V.; Garcia, C.; Lacasta, C.; Marti i Garcia, S.; Rodriguez, D.; Santoyo, D.; Solaz, C.; Soldevila, U.

    2016-09-01

    A radiation hard n+-in-p micro-strip sensor for the use in the Upgrade of the strip tracker of the ATLAS experiment at the High Luminosity Large Hadron Collider (HL-LHC) has been developed by the "ATLAS ITk Strip Sensor collaboration" and produced by Hamamatsu Photonics. Surface properties of different types of end-cap and barrel miniature sensors of the latest sensor design ATLAS12 have been studied before and after irradiation. The tested barrel sensors vary in "punch-through protection" (PTP) structure, and the end-cap sensors, whose stereo-strips differ in fan geometry, in strip pitch and in edge strip ganging options. Sensors have been irradiated with proton fluences of up to 1×1016 neq/cm2, by reactor neutron fluence of 1×1015 neq/cm2 and by gamma rays from 60Co up to dose of 1 MGy. The main goal of the present study is to characterize the leakage current for micro-discharge breakdown voltage estimation, the inter-strip resistance and capacitance, the bias resistance and the effectiveness of PTP structures as a function of bias voltage and fluence. It has been verified that the ATLAS12 sensors have high breakdown voltage well above the operational voltage which implies that different geometries of sensors do not influence their stability. The inter-strip isolation is a strong function of irradiation fluence, however the sensor performance is acceptable in the expected range for HL-LHC. New gated PTP structure exhibits low PTP onset voltage and sharp cut-off of effective resistance even at the highest tested radiation fluence. The inter-strip capacitance complies with the technical specification required before irradiation and no radiation-induced degradation was observed. A summary of ATLAS12 sensors tests is presented including a comparison of results from different irradiation sites. The measured characteristics are compared with the previous prototype of the sensor design, ATLAS07.

  14. Indiana Reading List. [Levels 1, 2, 3, and 4].

    ERIC Educational Resources Information Center

    Indiana State Dept. of Education, Indianapolis.

    This reading list is designed as a companion piece to Indiana's Academic Standards in English/Language Arts and is organized on four levels: Level 1, Grades K-2; Level 2, Grades 3-5; Level 3, Grades 6-8; and Level 4, Grades 9-12. It contains titles and authors for approximately 800 works. The Level 1 Reading List contains these sections: fiction…

  15. The Algorithm Theoretical Basis Document for Level 1A Processing

    NASA Technical Reports Server (NTRS)

    Jester, Peggy L.; Hancock, David W., III

    2012-01-01

    The first process of the Geoscience Laser Altimeter System (GLAS) Science Algorithm Software converts the Level 0 data into the Level 1A Data Products. The Level 1A Data Products are the time ordered instrument data converted from counts to engineering units. This document defines the equations that convert the raw instrument data into engineering units. Required scale factors, bias values, and coefficients are defined in this document. Additionally, required quality assurance and browse products are defined in this document.

  16. Algorithm and implementation of muon trigger and data transmission system for barrel-endcap overlap region of the CMS detector

    NASA Astrophysics Data System (ADS)

    Zabolotny, W. M.; Byszuk, A.

    2016-03-01

    The CMS experiment Level-1 trigger system is undergoing an upgrade. In the barrel-endcap transition region, it is necessary to merge data from 3 types of muon detectors—RPC, DT and CSC. The Overlap Muon Track Finder (OMTF) uses the novel approach to concentrate and process those data in a uniform manner to identify muons and their transversal momentum. The paper presents the algorithm and FPGA firmware implementation of the OMTF and its data transmission system in CMS. It is foreseen that the OMTF will be subject to significant changes resulting from optimization which will be done with the aid of physics simulations. Therefore, a special, high-level, parameterized HDL implementation is necessary.

  17. Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures

    PubMed Central

    Wimley, William C.

    2002-01-01

    The amino acid composition and architecture of all β-barrel membrane proteins of known three-dimensional structure have been examined to generate information that will be useful in identifying β-barrels in genome databases. The database consists of 15 nonredundant structures, including several novel, recent structures. Known structures include monomeric, dimeric, and trimeric β-barrels with between 8 and 22 membrane-spanning β-strands each. For this analysis the membrane-interacting surfaces of the β-barrels were identified with an experimentally derived, whole-residue hydrophobicity scale, and then the barrels were aligned normal to the bilayer and the position of the bilayer midplane was determined for each protein from the hydrophobicity profile. The abundance of each amino acid, relative to the genomic abundance, was calculated for the barrel exterior and interior. The architecture and diversity of known β-barrels was also examined. For example, the distribution of rise-per-residue values perpendicular to the bilayer plane was found to be 2.7 ± 0.25 Å per residue, or about 10 ± 1 residues across the membrane. Also, as noted by other authors, nearly every known membrane-spanning β-barrel strand was found to have a short loop of seven residues or less connecting it to at least one adjacent strand. Using this information we have begun to generate rapid screening algorithms for the identification of β-barrel membrane proteins in genomic databases. Application of one algorithm to the genomes of Escherichia coli and Pseudomonas aeruginosa confirms its ability to identify β-barrels, and reveals dozens of unidentified open reading frames that potentially code for β-barrel outer membrane proteins. PMID:11790840

  18. Fast Shower Simulation in the ATLAS Calorimeter

    SciTech Connect

    Barberio, E.; Boudreau, J.; Butler, B.; Cheung, S.L.; Dell'Acqua, A.; Di Simone, A.; Ehrenfeld, W.; Gallas, M.V.; Glazov, A.; Marshall, Z.; Mueller, J.; Placakyte, R.; Rimoldi, A.; Savard, P.; Tsulaia, V.; Waugh, A.; Young, C.C.; /SLAC

    2011-11-08

    The time to simulate pp collisions in the ATLAS detector is largely dominated by the showering of electromagnetic particles in the heavy parts of the detector, especially the electromagnetic barrel and endcap calorimeters. Two procedures have been developed to accelerate the processing time of electromagnetic particles in these regions: (1) a fast shower parameterisation and (2) a frozen shower library. Both work by generating the response of the calorimeter to electrons and positrons with Geant 4, and then reintroduce the response into the simulation at runtime. In the fast shower parameterisation technique, a parameterization is tuned to single electrons and used later by simulation. In the frozen shower technique, actual showers from low-energy particles are used in the simulation. Full Geant 4 simulation is used to develop showers down to {approx} 1 GeV, at which point the shower is terminated by substituting a frozen shower. Judicious use of both techniques over the entire electromagnetic portion of the ATLAS calorimeter produces an important improvement of CPU time. We discuss the algorithms and their performance in this paper.

  19. BARREL observations of a electron precipitation during a substorm

    NASA Astrophysics Data System (ADS)

    Halford, Alexa

    2016-07-01

    During the first Balloon Array for Relativistic Radiation belt Electron Loss (BARREL) campaign in January - February of 2013, many of the precipitation events observed were found to occur during geomagnetic substorms. Here we will look at one substorm in particular which occurred on 2 February 2013. During this event, there was an array of four payloads afloat above 27 km. Two of the payloads in particular mapped to the same L-shell and where bounded on either side by the two Van Allen Probes, LANL, and GOES satellites. The entire array also mapped to the CARISMA array and other ground based instruments in northern Canada. This set of unique observations allowed us to observe the substorm injection and the resultant region of electron precipitation.

  20. Modeling of gun barrel surface erosion: Historic perspective

    SciTech Connect

    Buckingham, A.C.

    1996-08-01

    Results and interpretations of numerical simulations of some dominant processes influencing gun barrel propellant combustion and flow-induced erosion are presented. Results include modeled influences of erosion reduction techniques such as solid additives, vapor phase chemical modifications, and alteration of surface solid composition through use of thin coatings. Precedents and historical perspective are provided with predictions from traditional interior ballistics compared to computer simulations. Accelerating reactive combustion flow, multiphase and multicomponent transport, flow-to-surface thermal/momentum/phase change/gas-surface chemical exchanges, surface and micro-depth subsurface heating/stress/composition evolution and their roles in inducing surface cracking, spall, ablation, melting, and vaporization are considered. Recognition is given to cyclic effects of previous firing history on material preconditioning. Current perspective and outlook for future are based on results of a US Army-LLNL erosion research program covering 7 y in late 1970s. This is supplemented by more recent research on hypervelocity electromagnetic projectile launchers.

  1. Grafting PNIPAAm from β-barrel shaped transmembrane nanopores.

    PubMed

    Charan, Himanshu; Kinzel, Julia; Glebe, Ulrich; Anand, Deepak; Garakani, Tayebeh Mirzaei; Zhu, Leilei; Bocola, Marco; Schwaneberg, Ulrich; Böker, Alexander

    2016-11-01

    The research on protein-polymer conjugates by grafting from the surface of proteins has gained significant interest in the last decade. While there are many studies with globular proteins, membrane proteins have remained untouched to the best of our knowledge. In this study, we established the conjugate formation with a class of transmembrane proteins and grow polymer chains from the ferric hydroxamate uptake protein component A (FhuA; a β-barrel transmembrane protein of Escherichia coli). As the lysine residues of naturally occurring FhuA are distributed over the whole protein, FhuA was reengineered to have up to 11 lysines, distributed symmetrically in a rim on the membrane exposed side (outside) of the protein channel and exclusively above the hydrophobic region. Reengineering of FhuA ensures a polymer growth only on the outside of the β-barrel and prevents blockage of the channel as a result of the polymerization. A water-soluble initiator for controlled radical polymerization (CRP) was consecutively linked to the lysine residues of FhuA and N-isopropylacrylamide (NIPAAm) polymerized under copper-mediated CRP conditions. The conjugate formation was analyzed by using MALDI-ToF mass spectrometry, SDS-PAGE, circular dichroism spectroscopy, analytical ultracentrifugation, dynamic light scattering, transmission electron microscopy and size exclusion chromatography. Such conjugates combine the specific functions of the transmembrane proteins, like maintaining membrane potential gradients or translocation of substrates with the unique properties of synthetic polymers such as temperature and pH stimuli handles. FhuA-PNIPAAm conjugates will serve as functional nanosized building blocks for applications in targeted drug delivery, self-assembly systems, functional membranes and transmembrane protein gated nanoreactors. PMID:27614163

  2. Building Detector Modules for the (S)CMS Pixel Barrel Detector

    NASA Astrophysics Data System (ADS)

    König, S.; PSI Pixel Group

    2009-12-01

    For the barrel part of the CMS pixel tracker about 800 silicon pixel detector modules are required. The modules are bump bonded, assembled and tested at the Paul Scherrer Institute. This article gives the production results of the module assembly for the CMS experiment and shows the evolution of the barrel pixel module design for the first phase of the LHC luminosity upgrade.

  3. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 1 shall include (1) all barrels no dimension of which is in error by more than the following amounts, and (2) all barrels one or more of the dimensions of which are in error by more than the following amounts, and which in addition have no dimension in error in the opposite direction: Error,...

  4. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 1 shall include (1) all barrels no dimension of which is in error by more than the following amounts, and (2) all barrels one or more of the dimensions of which are in error by more than the following amounts, and which in addition have no dimension in error in the opposite direction: Error,...

  5. Tapered laser rods as a means of minimizing the path length of trapped barrel mode rays

    DOEpatents

    Beach, Raymond J.; Honea, Eric C.; Payne, Stephen A.; Mercer, Ian; Perry, Michael D.

    2005-08-30

    By tapering the diameter of a flanged barrel laser rod over its length, the maximum trapped path length of a barrel mode can be dramatically reduced, thereby reducing the ability of the trapped spontaneous emission to negatively impact laser performance through amplified spontaneous emission (ASE). Laser rods with polished barrels and flanged end caps have found increasing application in diode array end-pumped laser systems. The polished barrel of the rod serves to confine diode array pump light within the rod. In systems utilizing an end-pumping geometry and such polished barrel laser rods, the pump light that is introduced into one or both ends of the laser rod, is ducted down the length of the rod via the total internal reflections (TIRs) that occur when the light strikes the rod's barrel. A disadvantage of using polished barrel laser rods is that such rods are very susceptible to barrel mode paths that can trap spontaneous emission over long path lengths. This trapped spontaneous emission can then be amplified through stimulated emission resulting in a situation where the stored energy available to the desired lasing mode is effectively depleted, which then negatively impacts the laser's performance, a result that is effectively reduced by introducing a taper onto the laser rod.

  6. Level 1 Processing of MODIS Direct Broadcast Data From Terra

    NASA Technical Reports Server (NTRS)

    Lynnes, Christopher; Smith, Peter; Shotland, Larry; El-Ghazawi, Tarek; Zhu, Ming

    2000-01-01

    In February 2000, an effort was begun to adapt the Moderate Resolution Imaging Spectroradiometer (MODIS) Level 1 production software to process direct broadcast data. Three Level 1 algorithms have been adapted and packaged for release: Level 1A converts raw (level 0) data into Hierarchical Data Format (HDF), unpacking packets into scans; Geolocation computes geographic information for the data points in the Level 1A; and the Level 1B computes geolocated, calibrated radiances from the Level 1A and Geolocation products. One useful aspect of adapting the production software is the ability to incorporate enhancements contributed by the MODIS Science Team. We have therefore tried to limit changes to the software. However, in order to process the data immediately on receipt, we have taken advantage of a branch in the geolocation software that reads orbit and altitude information from the packets themselves, rather than external ancillary files used in standard production. We have also verified that the algorithms can be run with smaller time increments (2.5 minutes) than the five-minute increments used in production. To make the code easier to build and run, we have simplified directories and build scripts. Also, dependencies on a commercial numerics library have been replaced by public domain software. A version of the adapted code has been released for Silicon Graphics machines running lrix. Perhaps owing to its origin in production, the software is rather CPU-intensive. Consequently, a port to Linux is underway, followed by a version to run on PC clusters, with an eventual goal of running in near-real-time (i.e., process a ten-minute pass in ten minutes).

  7. The commercial Atlas today

    NASA Astrophysics Data System (ADS)

    Patzer, Mike; White, Robert C.

    1990-07-01

    Spanning more than three decades, the General Dynamics Atlas launch vehicle program has contributed greatly to the productive exploitation of space. This paper briefly reviews Atlas history and achievements and then focuses on present Atlas launch vehicle configurations, capabilities, and propulsion systems. The four-vehicle Atlas family is described, inluding manufacturing, performance, and design differences. Vehicle launch options including the fairing and spacecraft adapter are discussed. A mission profile, flight environments, and a nominal sequence of events are described for a standard GTO mission. Details on vehicle enhancements are presented including the addition of solid rocket motors, booster and Centaur engine uprates, and avionics improvements.

  8. Solution-Focused Group Therapy for Level 1 Substance Abusers

    ERIC Educational Resources Information Center

    Smock, Sara A.; Trepper, Terry S.; Wetchler, Joseph L.; McCollum, Eric E.; Ray, Rose; Pierce, Kent

    2008-01-01

    The present study compared solution-focused group therapy (SFGT) with a traditional problem-focused treatment for level 1 substance abusers. Outcome research on the effectiveness of solution-focused group therapy is minimal, especially in treating substance abusers. In the present study, clients were measured before and after treatment to…

  9. Interactive Learning in a Higher Education Level 1 Mechanics Module.

    ERIC Educational Resources Information Center

    Booth, Kathryn M.; James, Brian W.

    2001-01-01

    Encourages Level 1 students (those taking a subject for the first time at the higher education level) to develop a deeper learning approach. Uses a cooperative learning approach to pose conceptual questions for interactive discussions and changes both teaching method and form of examination paper for a Mechanics module. (Contains 17 references.)…

  10. The TIM Barrel Architecture Facilitated the Early Evolution of Protein-Mediated Metabolism.

    PubMed

    Goldman, Aaron David; Beatty, Joshua T; Landweber, Laura F

    2016-01-01

    The triosephosphate isomerase (TIM) barrel protein fold is a structurally repetitive architecture that is present in approximately 10% of all enzymes. It is generally assumed that this ubiquity in modern proteomes reflects an essential historical role in early protein-mediated metabolism. Here, we provide quantitative and comparative analyses to support several hypotheses about the early importance of the TIM barrel architecture. An information theoretical analysis of protein structures supports the hypothesis that the TIM barrel architecture could arise more easily by duplication and recombination compared to other mixed α/β structures. We show that TIM barrel enzymes corresponding to the most taxonomically broad superfamilies also have the broadest range of functions, often aided by metal and nucleotide-derived cofactors that are thought to reflect an earlier stage of metabolic evolution. By comparison to other putatively ancient protein architectures, we find that the functional diversity of TIM barrel proteins cannot be explained simply by their antiquity. Instead, the breadth of TIM barrel functions can be explained, in part, by the incorporation of a broad range of cofactors, a trend that does not appear to be shared by proteins in general. These results support the hypothesis that the simple and functionally general TIM barrel architecture may have arisen early in the evolution of protein biosynthesis and provided an ideal scaffold to facilitate the metabolic transition from ribozymes, peptides, and geochemical catalysts to modern protein enzymes.

  11. Structural insight into the biogenesis of β-barrel membrane proteins.

    PubMed

    Noinaj, Nicholas; Kuszak, Adam J; Gumbart, James C; Lukacik, Petra; Chang, Hoshing; Easley, Nicole C; Lithgow, Trevor; Buchanan, Susan K

    2013-09-19

    β-barrel membrane proteins are essential for nutrient import, signalling, motility and survival. In Gram-negative bacteria, the β-barrel assembly machinery (BAM) complex is responsible for the biogenesis of β-barrel membrane proteins, with homologous complexes found in mitochondria and chloroplasts. Here we describe the structure of BamA, the central and essential component of the BAM complex, from two species of bacteria: Neisseria gonorrhoeae and Haemophilus ducreyi. BamA consists of a large periplasmic domain attached to a 16-strand transmembrane β-barrel domain. Three structural features shed light on the mechanism by which BamA catalyses β-barrel assembly. First, the interior cavity is accessible in one BamA structure and conformationally closed in the other. Second, an exterior rim of the β-barrel has a distinctly narrowed hydrophobic surface, locally destabilizing the outer membrane. And third, the β-barrel can undergo lateral opening, suggesting a route from the interior cavity in BamA into the outer membrane. PMID:23995689

  12. Effect of shortening the barrel in contact shots from rifles and shotguns.

    PubMed

    Grosse Perdekamp, M; Vennemann, B; Kneubuehl, B P; Uhl, M; Treier, M; Braunwarth, R; Pollak, S

    2008-01-01

    In a suicidal gunshot fired to the chest from a carbine, the barrel of which had been shortened to half its original length, an unexpectedly large degree of destruction of the anterior thoracic wall with extensive undermining of the subcutis was found. This phenomenon was investigated for reconstructive purposes by firing test shots from two different long guns (caliber 7.92 x 57 repeating rifle with full-jacketed pointed bullet and caliber 12/70 single-barreled shotgun with shotgun slug) into blocks of soap (38 x 25 x 25 cm). The contact shots were fired before and after shortening the barrels (repeating rifle from 60 to 30 cm and single-barreled shotgun from 72 to 36 cm). The volume of the cavities in the simulant was visualized three-dimensionally with the help of a multislice computed tomography (CT) scanner and calculated sectionally. With the repeating rifle and the single-barreled shotgun, the shots from the sawed-off barrels produced significantly larger cavity diameters in the first section of the bullet track. This effect is attributable to the fact that, with a shortened barrel, the gas pressure at the muzzle is higher, thus, leading to increased expansion in the initial part of the wound track in contact shots.

  13. High Stimulus-Related Information in Barrel Cortex Inhibitory Interneurons.

    PubMed

    Reyes-Puerta, Vicente; Kim, Suam; Sun, Jyh-Jang; Imbrosci, Barbara; Kilb, Werner; Luhmann, Heiko J

    2015-06-01

    The manner in which populations of inhibitory (INH) and excitatory (EXC) neocortical neurons collectively encode stimulus-related information is a fundamental, yet still unresolved question. Here we address this question by simultaneously recording with large-scale multi-electrode arrays (of up to 128 channels) the activity of cell ensembles (of up to 74 neurons) distributed along all layers of 3-4 neighboring cortical columns in the anesthetized adult rat somatosensory barrel cortex in vivo. Using two different whisker stimulus modalities (location and frequency) we show that individual INH neurons--classified as such according to their distinct extracellular spike waveforms--discriminate better between restricted sets of stimuli (≤6 stimulus classes) than EXC neurons in granular and infra-granular layers. We also demonstrate that ensembles of INH cells jointly provide as much information about such stimuli as comparable ensembles containing the ~20% most informative EXC neurons, however presenting less information redundancy - a result which was consistent when applying both theoretical information measurements and linear discriminant analysis classifiers. These results suggest that a consortium of INH neurons dominates the information conveyed to the neocortical network, thereby efficiently processing incoming sensory activity. This conclusion extends our view on the role of the inhibitory system to orchestrate cortical activity.

  14. High Stimulus-Related Information in Barrel Cortex Inhibitory Interneurons

    PubMed Central

    Reyes-Puerta, Vicente; Kim, Suam; Sun, Jyh-Jang; Imbrosci, Barbara; Kilb, Werner; Luhmann, Heiko J.

    2015-01-01

    The manner in which populations of inhibitory (INH) and excitatory (EXC) neocortical neurons collectively encode stimulus-related information is a fundamental, yet still unresolved question. Here we address this question by simultaneously recording with large-scale multi-electrode arrays (of up to 128 channels) the activity of cell ensembles (of up to 74 neurons) distributed along all layers of 3–4 neighboring cortical columns in the anesthetized adult rat somatosensory barrel cortex in vivo. Using two different whisker stimulus modalities (location and frequency) we show that individual INH neurons – classified as such according to their distinct extracellular spike waveforms – discriminate better between restricted sets of stimuli (≤6 stimulus classes) than EXC neurons in granular and infra-granular layers. We also demonstrate that ensembles of INH cells jointly provide as much information about such stimuli as comparable ensembles containing the ~20% most informative EXC neurons, however presenting less information redundancy – a result which was consistent when applying both theoretical information measurements and linear discriminant analysis classifiers. These results suggest that a consortium of INH neurons dominates the information conveyed to the neocortical network, thereby efficiently processing incoming sensory activity. This conclusion extends our view on the role of the inhibitory system to orchestrate cortical activity. PMID:26098109

  15. Double Barreled Wet Colostomy: Initial Experience and Literature Review

    PubMed Central

    Salgado-Cruz, Luis; Espin-Basany, Eloy; Vallribera-Valls, Francesc; Sanchez-Garcia, Jose; Jimenez-Gomez, Luis Miguel; Marti-Gallostra, Marc; Garza-Maldonado, Ana

    2014-01-01

    Background. Pelvic exenteration and multivisceral resection in colorectal have been described as a curative and palliative intervention. Urinary tract reconstruction in a pelvic exenteration is achieved in most cases with an ileal conduit of Bricker, although different urinary reservoirs have been described. Methods. A retrospective and observational study of six patients who underwent a pelvic exenteration and urinary tract reconstruction with a double barreled wet colostomy (DBWC) was done, describing the preoperative diagnosis, the indication for the pelvic exenteration, the complications associated with the procedure, and the followup in a period of 5 years. A literature review of the case series reported of the technique was performed. Results. Six patients had a urinary tract reconstruction with the DBWC technique, 5 male patients and one female patient. Age range was from 20 to 77 years, with a medium age 53.6 years. The most frequent complication presented was a pelvic abscess in 3 patients (42.85%); all complications could be resolved with a conservative treatment. Conclusion. In the group of our patients with pelvic exenteration and urinary tract reconstruction with a DBWC, it is a safe procedure and well tolerated by the patients, and most of the complications can be resolved with conservative treatment. PMID:25574498

  16. Supramolecular barrels from amphiphilic rigid-flexible macrocycles.

    PubMed

    Yang, Won-Young; Ahn, Jong-Hyun; Yoo, Yong-Sik; Oh, Nam-Keun; Lee, Myongsoo

    2005-05-01

    Precise control of supramolecular objects requires the rational design of molecular components, because the information determining their specific assembly should be encoded in their molecular architecture. In this context, diverse self-assembling molecules including liquid crystals, dendrimers, block copolymers, hydrogen-bonded complexes and rigid macrocycles are being created as a means of manipulating supramolecular structure. Incorporation of a stiff rod-like building block into an amphiphilic molecular architecture leads to another class of self-assembling molecules. Aggregation of rod building blocks can generate various nanoscale objects including bundles, ribbons, tubules and vesicles, depending on the molecular structure and/or the presence of a selective solvent. We present here an unusual example of supramolecular barrels in the solid and in aqueous solution, based on the self-assembly of amphiphilic rigid-flexible macrocycles driven by non-covalent interactions. Preliminary experiments show that these amphiphilic macrocycles are membrane-active. The amphiphilic macrocycles might thus lead to an excellent model system for exploring biological processes in supramolecular materials.

  17. Performance of prototypes for the PANDA barrel EMC

    NASA Astrophysics Data System (ADS)

    Bremer, D. A.; Eissner, T.; Drexler, P.; Moritz, M.; Novotny, R. W.; PANDA Collaboration

    2015-02-01

    The PANDA experiment will be part of the future Facility for Antiproton and Ion Research (FAIR) and aims for the study of strong interaction within the charm sector via antiproton proton collisions up to antiproton momenta of 15 GeV/c. Reflecting the variety of the physics program the PANDA detector is designed as a multi-purpose detector able to perform tracking, calorimetry and particle identification with nearly complete coverage of the solid angle. The Electromagnetic Calorimeter (EMC) contained inside its Target Spectrometer is based on cooled PbWO4 scintillator crystals. In order to ensure an excellent performance throughout the large dynamic range of photon/electron energies ranging from a few MeV up to 15 GeV an extensive prototyping phase is mandatory. This contribution describes the measured response of the EMC barrel part prototype PROTO60 at the largest design energy to secondary beams provided by the SPS at CERN. In addition to PROTO60 a tracking station was deployed, providing precise position information of the 15 GeV/c positrons. For calibration purposes a 150 GeV/c muon beam and cosmic radiation, in combination with estimations from GEANT4 simulations were used. The obtained performance concerning energy, position and time information is presented.

  18. Dynamically tuned shroud for gun barrel vibration attenuation

    NASA Astrophysics Data System (ADS)

    Littlefield, Andrew G.; Kathe, Eric L.; Durocher, Robert

    2002-06-01

    Modern tank guns, such as the one on the Abrams, are stabilized to allow fire on the move while traversing uneven terrain. The current barrel is short enough that treating as a rigid beam allows engagement of another tank at ranges of over a kilometer. However, as the length of the tube is extended, to meet required muzzle exit velocities, the terrain induced vibrations lead to increased muzzle pointing errors. A method to reduce these vibrations is to use the forward thermal shroud as part of a mass tuned damper. In this case the system under study is an extended length version of the gun currently fielded. This extended length increases its susceptibility to terrain-induced vibrations. The forward thermal shroud has been shortened and additional mass has been added onto its forward collar. This collar is then supported by springs, which are preloaded so that they stay in contact through the full range of the shroud's movement. Varying the stiffness of these springs allows for tuning of the absorber. Different types of springs and attachments have been tried. The current version uses leaf springs and a wedge collar. This system has been modeled and experiments conducted to validate the model.

  19. Cerebral glucose utilization after vasopressin barrel rotation or bicuculline seizures

    SciTech Connect

    Wurpel, J.; Dundore, R.; Bryan, R.; Keil, L.; Severs, W.B.

    1986-03-05

    Intraventricular (ivt) arginine vasopressin (AVP) causes a violent motor behavior termed barrel rotation (BR). AVP-BR is affected by visual/vestibular sensory input and may be related to other CNS motor disorders (seizures). Local cerebral glucose utilization (LCGU) was compared in SD rats during AVP-BR and bicuculline (BIC) seizures. Three groups were used: saline-ivt; AVP-ivt 0.5 ..mu..g; BIC-5.5 mg/kg,sc. /sup 14/C-glucose (40 ..mu..CI iv) was injected 15 sec. after ivt-saline or AVP or onset of BIC seizures. Rats were decapitated 10 min. after /sup 14/C-glucose. Brains were removed and dissected into 19 regions which were digested and glucose uptake quantified by liquid scintillation counting. LCGU was significantly increased in all CNS areas during BIC seizures vs controls (21-92%; p < 0.05 ANOVA). LCGU exhibits variable (upward arrow, downward arrow) changes in discrete areas during AVP-BR (p < .05). Glucose uptake increased in: cortex-olfactory (21%), sensory (9%), motor (8%) cerebellum-rt (13%) and 1t (17%) hemispheres, vermis (6%); pyramidal tract (6%); mesencephalon (5%); and pons (8%). Two areas decreased LCGU during AVP-BR: auditory cortex (-8%) and hippocampus (-11%). AVP-BR exhibits distinct changes in LCGU vs BIC seizures.

  20. Supramolecular barrels from amphiphilic rigid-flexible macrocycles

    NASA Astrophysics Data System (ADS)

    Yang, Won-Young; Ahn, Jong-Hyun; Yoo, Yong-Sik; Oh, Nam-Keun; Lee, Myongsoo

    2005-05-01

    Precise control of supramolecular objects requires the rational design of molecular components, because the information determining their specific assembly should be encoded in their molecular architecture. In this context, diverse self-assembling molecules including liquid crystals, dendrimers, block copolymers, hydrogen-bonded complexes and rigid macrocycles are being created as a means of manipulating supramolecular structure. Incorporation of a stiff rod-like building block into an amphiphilic molecular architecture leads to another class of self-assembling molecules. Aggregation of rod building blocks can generate various nanoscale objects including bundles, ribbons, tubules and vesicles, depending on the molecular structure and/or the presence of a selective solvent. We present here an unusual example of supramolecular barrels in the solid and in aqueous solution, based on the self-assembly of amphiphilic rigid-flexible macrocycles driven by non-covalent interactions. Preliminary experiments show that these amphiphilic macrocycles are membrane-active. The amphiphilic macrocycles might thus lead to an excellent model system for exploring biological processes in supramolecular materials.

  1. Upgrades of the ATLAS muon spectrometer with sMDT chambers

    NASA Astrophysics Data System (ADS)

    Ferretti, C.; Kroha, H.

    2016-07-01

    With half the drift-tube diameter of the Monitored Drift Tube (MDT) chambers of the ATLAS muon spectrometer and otherwise unchanged operating parameters, small-diameter Muon Drift Tube (sMDT) chambers provide an order of magnitude higher rate capability and can be installed in detector regions where MDT chambers do not fit. The chamber assembly time has been reduced by a factor of seven to one working day and the sense wire positioning accuracy improved by a factor of two to better than ten microns. Two sMDT chambers have been installed in ATLAS in 2014 to improve the momentum resolution in the barrel part of the spectrometer. The construction of an additional twelve chambers covering the feet regions of the ATLAS detector has started. It will be followed by the replacement of the MDT chambers at the ends of the barrel inner layer by sMDTs improving the performance at the high expected background rates and providing space for additional RPC trigger chambers.

  2. Performance of the ATLAS Liquid Argon Calorimeter after three years of LHC operation and plans for a future upgrade

    NASA Astrophysics Data System (ADS)

    Ilic, N.

    2014-03-01

    The ATLAS experiment is a multi-purpose detector built for analyzing LHC collision data. In July 2012, ATLAS announced the discovery of the Higgs boson, the last undiscovered particle in the Standard Model of Particle Physics. The ATLAS Liquid Argon (LAr) Calorimeter played a crucial role in the discovery by providing accurate measurements of Higgs final state objects such as photons, electrons and jets. The LAr detector is a sampling calorimeter consisting of four subsystems: an electromagnetic barrel, electromagnetic endcaps, hadronic endcaps, and forward calorimeters. The purity and temperature of the liquid argon remained well above the required levels throughout the data-taking period. Overall the calorimeter performed very well, with over 99% of data it collected in 2012 proton-proton collisions being suitable for physics analyses. In order to ensure good LAr detector performance at future higher luminosity LHC operation, several upgrades are being planned and implemented.

  3. Validation of Ozone Monitoring Instrument level 1b data products

    NASA Astrophysics Data System (ADS)

    Dobber, M.; Kleipool, Q.; Dirksen, R.; Levelt, P.; Jaross, G.; Taylor, S.; Kelly, T.; Flynn, L.; Leppelmeier, G.; Rozemeijer, N.

    2008-08-01

    The validation of the collection 2 level 1b radiance and irradiance data measured with the Ozone Monitoring Instrument (OMI) on NASA's Earth Observing System (EOS) Aura satellite is investigated and described. A number of improvements from collection 2 data to collection 3 data are identified and presented. It is shown that with these improvements in the calibration and in the data processing the accuracy of the geophysically calibrated level 1b radiance and irradiance is improved in the collection 3 data. It is shown that the OMI level 1b irradiance product can be reproduced from a high-resolution solar reference spectrum convolved with the OMI spectral slit functions within 3% for the Fraunhofer structure and within 0.5% for the offset. The agreement of the OMI level 1b irradiance data product with other available literature irradiance spectra is within 4%. The viewing angle dependence of the irradiance and the irradiance goniometry are discussed, and improvements in the collection 3 data are described. The in-orbit radiometric degradation since launch is shown to be smaller than 0.5% above 310 nm and increases to about 1.2% at 270 nm. It is shown how the viewing angle dependence of the radiance is improved in the collection 3 data. The calculation of the surface albedo from OMI measurement data is discussed, and first results are presented. The OMI surface albedo values are compared to literature values from the Total Ozone Mapping Spectrometer (TOMS) and the Global Ozone Monitoring Experiment (GOME). Finally, improvements in the spectral and spatial stray light corrections from collection 2 data to collection 3 data are presented and discussed.

  4. Level-1C Product from AIRS: Principal Component Filtering

    NASA Technical Reports Server (NTRS)

    Manning, Evan M.; Jiang, Yibo; Aumann, Hartmut H.; Elliott, Denis A.; Hannon, Scott

    2012-01-01

    The Atmospheric Infrared Sounder (AIRS), launched on the EOS Aqua spacecraft on May 4, 2002, is a grating spectrometer with 2378 channels in the range 3.7 to 15.4 microns. In a grating spectrometer each individual radiance measurement is largely independent of all others. Most measurements are extremely accurate and have very low noise levels. However, some channels exhibit high noise levels or other anomalous behavior, complicating applications needing radiances throughout a band, such as cross-calibration with other instruments and regression retrieval algorithms. The AIRS Level-1C product is similar to Level-1B but with instrument artifacts removed. This paper focuses on the "cleaning" portion of Level-1C, which identifies bad radiance values within spectra and produces substitute radiances using redundant information from other channels. The substitution is done in two passes, first with a simple combination of values from neighboring channels, then with principal components. After results of the substitution are shown, differences between principal component reconstructed values and observed radiances are used to investigate detailed noise characteristics and spatial misalignment in other channels.

  5. Academic performance and student engagement in level 1 physics undergraduates

    NASA Astrophysics Data System (ADS)

    Casey, M. M.; McVitie, S.

    2009-09-01

    At the beginning of academic year 2007-08, staff in the Department of Physics and Astronomy at the University of Glasgow started to implement a number of substantial changes to the administration of the level 1 physics undergraduate class. The main aims were to improve the academic performance and progression statistics. With this in mind, a comprehensive system of learning support was introduced, the main remit being the provision of an improved personal contact and academic monitoring and support strategy for all students at level 1. The effects of low engagement with compulsory continuous assessment components had already been observed to have a significant effect on students sitting in the middle of the grade curve. Analysis of data from the 2007-08 class showed that even some nominally high-achieving students achieved lowered grades due to the effects of low engagement. Nonetheless, academic and other support measures put in place during 2007-08 played a part in raising the passrate for the level 1 physics class by approximately 8% as well as raising the progression rate by approximately 10%.

  6. BNL ATLAS Grid Computing

    ScienceCinema

    Michael Ernst

    2016-07-12

    As the sole Tier-1 computing facility for ATLAS in the United States and the largest ATLAS computing center worldwide Brookhaven provides a large portion of the overall computing resources for U.S. collaborators and serves as the central hub for storing,

  7. BNL ATLAS Grid Computing

    SciTech Connect

    Michael Ernst

    2008-10-02

    As the sole Tier-1 computing facility for ATLAS in the United States and the largest ATLAS computing center worldwide Brookhaven provides a large portion of the overall computing resources for U.S. collaborators and serves as the central hub for storing,

  8. ATLAS ACCEPTANCE TEST

    SciTech Connect

    Cochrane, J. C. , Jr.; Parker, J. V.; Hinckley, W. B.; Hosack, K. W.; Mills, D.; Parsons, W. M.; Scudder, D. W.; Stokes, J. L.; Tabaka, L. J.; Thompson, M. C.; Wysocki, Frederick Joseph; Campbell, T. N.; Lancaster, D. L.; Tom, C. Y.

    2001-01-01

    The acceptance test program for Atlas, a 23 MJ pulsed power facility for use in the Los Alamos High Energy Density Hydrodynamics program, has been completed. Completion of this program officially releases Atlas from the construction phase and readies it for experiments. Details of the acceptance test program results and of machine capabilities for experiments will be presented.

  9. Language Industries Atlas.

    ERIC Educational Resources Information Center

    Hearn, P. M., Ed.; Button, D. F., Ed.

    This atlas describes the activities of public and private organizations that create the infrastructure within which languages are able to develop and interact in the European Community (EC). It contains over 1,000 descriptions of activities that play a role in shaping the language industries, from a user or provider perspective. The atlas is…

  10. [The composition and characteristics of the spread of the shot products from a gas-barrel weapon].

    PubMed

    Isakov, V D; Babakhanian, R V; Kuznetsov, Iu D; Sigalov, F A

    1998-01-01

    Chemical composition and diffusion of additional factors of a shot from barrel gun supplied with a standard chemical cartridge are studied. Experimental shots from gas pistols of three designs were made. During shots from gas barrel guns the victim is exposed to additional factors characteristic of both fire arms and gas barrel guns, namely, fragments of plastic cartridge container and pads, magnesium particles, and lacquer powder. The characteristics of the short range zone for gas barrel guns correspond to those of short barrel fire arms.

  11. National Atlas maps

    USGS Publications Warehouse

    ,

    1991-01-01

    The National Atlas of the United States of America was published by the U.S. Geological Survey in 1970. Its 765 maps and charts are on 335 14- by 19-inch pages. Many of the maps span facing pages. It's worth a quick trip to the library just to leaf through all 335 pages of this book. Rapid scanning of its thematic maps yields rich insights to the geography of issues of continuing national interest. On most maps, the geographic patterns are still valid, though the data are not current. The atlas is out of print, but many of its maps can be purchased separately. Maps that span facing pages in the atlas are printed on one sheet. The maps dated after 1970 are either revisions of original atlas maps, or new maps published in atlas format. The titles of the separate maps are listed here.

  12. Diabetes Interactive Atlas.

    PubMed

    Kirtland, Karen A; Burrows, Nilka R; Geiss, Linda S

    2014-02-06

    The Diabetes Interactive Atlas is a recently released Web-based collection of maps that allows users to view geographic patterns and examine trends in diabetes and its risk factors over time across the United States and within states. The atlas provides maps, tables, graphs, and motion charts that depict national, state, and county data. Large amounts of data can be viewed in various ways simultaneously. In this article, we describe the design and technical issues for developing the atlas and provide an overview of the atlas' maps and graphs. The Diabetes Interactive Atlas improves visualization of geographic patterns, highlights observation of trends, and demonstrates the concomitant geographic and temporal growth of diabetes and obesity.

  13. A Glimpse of Atlas

    NASA Technical Reports Server (NTRS)

    2005-01-01

    Saturn's little moon Atlas orbits Saturn between the outer edge of the A ring and the fascinating, twisted F ring. This image just barely resolves the disk of Atlas, and also shows some of the knotted structure for which the F ring is known. Atlas is 32 kilometers (20 miles) across.

    The bright outer edge of the A ring is overexposed here, but farther down the image several bright ring features can be seen.

    The image was taken in visible light with the Cassini spacecraft narrow-angle camera on April 25, 2005, at a distance of approximately 2.4 million kilometers (1.5 million miles) from Atlas and at a Sun-Atlas-spacecraft, or phase, angle of 60 degrees. Resolution in the original image was 14 kilometers (9 miles) per pixel.

  14. Long-range intralaminar noise correlations in the barrel cortex

    PubMed Central

    Reyes-Puerta, Vicente; Sun, Jyh-Jang; Shani, Itamar; Luhmann, Heiko J.; Shamir, Maoz

    2015-01-01

    Identifying the properties of correlations in the firing of neocortical neurons is central to our understanding of cortical information processing. It has been generally assumed, by virtue of the columnar organization of the neocortex, that the firing of neurons residing in a certain vertical domain is highly correlated. On the other hand, firing correlations between neurons steeply decline with horizontal distance. Technical difficulties in sampling neurons with sufficient spatial information have precluded the critical evaluation of these notions. We used 128-channel “silicon probes” to examine the spike-count noise correlations during spontaneous activity between multiple neurons with identified laminar position and over large horizontal distances in the anesthetized rat barrel cortex. Eigen decomposition of correlation coefficient matrices revealed that the laminar position of a neuron is a significant determinant of these correlations, such that the fluctuations of layer 5B/6 neurons are in opposite direction to those of layers 5A and 4. Moreover, we found that within each experiment, the distribution of horizontal, intralaminar spike-count correlation coefficients, up to a distance of ∼1.5 mm, is practically identical to the distribution of vertical correlations. Taken together, these data reveal that the neuron's laminar position crucially affects its role in cortical processing. Moreover, our analyses reveal that this laminar effect extends over several functional columns. We propose that within the cortex the influence of the horizontal elements exists in a dynamic balance with the influence of the vertical domain and this balance is modulated with brain states to shape the network's behavior. PMID:25787960

  15. Beta 2-adrenergic receptors are colocalized and coregulated with "whisker barrels" in rat somatosensory cortex.

    PubMed Central

    Vos, P; Kaufmann, D; Hand, P J; Wolfe, B B

    1990-01-01

    Autoradiography has been used to visualize independently the subtypes of beta-adrenergic receptors in rat somatosensory cortex. Beta 2-Adrenergic receptors, but not beta 1-adrenergic receptors colocalize with "whisker barrels" in this tissue. Thus, each whisker sends a specific multisynaptic pathway to the somatosensory cortex that can be histochemically visualized and only one subtype of beta-adrenergic receptor is specifically associated with this cortical representation. Additionally, neonatal lesion of any or all of the whisker follicles results in loss of the corresponding barrel(s) as shown by histochemical markers. This loss is paralleled by a similar loss in the organization of beta 2-adrenergic receptors in the somatosensory cortex. Other results indicate that these beta 2-adrenergic receptors are not involved in moment-to-moment signal transmission in this pathway and, additionally, are not involved in a gross way in the development of whisker-barrel array. Images PMID:2164222

  16. EXTERNAL BARREL TEMPERATURE OF A SMALL BORE OLYMPIC RIFLE AND SHOOTING PRECISION

    PubMed Central

    Gladyszewska, B.; Baranowski, P.; Mazurek, W.; Wozniak, J.

    2013-01-01

    Investigations on changes in a rifle's barrel temperature during shooting in a rhythm typical for practitioners of Olympic shooting sports are presented. Walther KK300 (cal. 5.6 mm), a typical rifle often used in Olympic competitions, R50 RWS ammunition and a high speed thermographic camera were used in the study. Altair version 5 software was used to process thermal images and a stationary wavelet transform was applied to denoise signals for all the studied points. It was found that the temperature of the rifle barrel does not exceed 0.3°C after one shot whereas the total temperature increase does not exceed 5°C after taking 40 shots and does not affect the position of the hitting point on a target. In fact, contrary to popular belief, the so-called “warming shots” are not done for barrel heating but for cleaning of remnants in the barrel. PMID:24744465

  17. External barrel temperature of a small bore olympic rifle and shooting precision.

    PubMed

    Gladyszewska, B; Baranowski, P; Mazurek, W; Wozniak, J; Gladyszewski, G

    2013-03-01

    Investigations on changes in a rifle's barrel temperature during shooting in a rhythm typical for practitioners of Olympic shooting sports are presented. Walther KK300 (cal. 5.6 mm), a typical rifle often used in Olympic competitions, R50 RWS ammunition and a high speed thermographic camera were used in the study. Altair version 5 software was used to process thermal images and a stationary wavelet transform was applied to denoise signals for all the studied points. It was found that the temperature of the rifle barrel does not exceed 0.3°C after one shot whereas the total temperature increase does not exceed 5°C after taking 40 shots and does not affect the position of the hitting point on a target. In fact, contrary to popular belief, the so-called "warming shots" are not done for barrel heating but for cleaning of remnants in the barrel.

  18. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  19. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  20. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  1. De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy.

    PubMed

    Huang, Po-Ssu; Feldmeier, Kaspar; Parmeggiani, Fabio; Fernandez Velasco, D Alejandro; Höcker, Birte; Baker, David

    2016-01-01

    Despite efforts for over 25 years, de novo protein design has not succeeded in achieving the TIM-barrel fold. Here we describe the computational design of four-fold symmetrical (β/α)8 barrels guided by geometrical and chemical principles. Experimental characterization of 33 designs revealed the importance of side chain-backbone hydrogen bonds for defining the strand register between repeat units. The X-ray crystal structure of a designed thermostable 184-residue protein is nearly identical to that of the designed TIM-barrel model. PSI-BLAST searches do not identify sequence similarities to known TIM-barrel proteins, and sensitive profile-profile searches indicate that the design sequence is distant from other naturally occurring TIM-barrel superfamilies, suggesting that Nature has sampled only a subset of the sequence space available to the TIM-barrel fold. The ability to design TIM barrels de novo opens new possibilities for custom-made enzymes.

  2. Yeast Mitochondria as a Model System to Study the Biogenesis of Bacterial β-Barrel Proteins.

    PubMed

    Ulrich, Thomas; Oberhettinger, Philipp; Autenrieth, Ingo B; Rapaport, Doron

    2015-01-01

    Beta-barrel proteins are found in the outer membrane of Gram-negative bacteria, mitochondria, and chloroplasts. The evolutionary conservation in the biogenesis of these proteins allows mitochondria to assemble bacterial β-barrel proteins in their functional form. In this chapter, we describe exemplarily how the capacity of yeast mitochondria to process the trimeric autotransporter YadA can be used to study the role of bacterial periplasmic chaperones in this process. PMID:26427673

  3. A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins

    PubMed Central

    2012-01-01

    Background Transmembrane β-barrel proteins are a special class of transmembrane proteins which play several key roles in human body and diseases. Due to experimental difficulties, the number of transmembrane β-barrel proteins with known structures is very small. Over the years, a number of learning-based methods have been introduced for recognition and structure prediction of transmembrane β-barrel proteins. Most of these methods emphasize on homology search rather than any biological or chemical basis. Results We present a novel graph-theoretic model for classification and structure prediction of transmembrane β-barrel proteins. This model folds proteins based on energy minimization rather than a homology search, avoiding any assumption on availability of training dataset. The ab initio model presented in this paper is the first method to allow for permutations in the structure of transmembrane proteins and provides more structural information than any known algorithm. The model is also able to recognize β-barrels by assessing the pseudo free energy. We assess the structure prediction on 41 proteins gathered from existing databases on experimentally validated transmembrane β-barrel proteins. We show that our approach is quite accurate with over 90% F-score on strands and over 74% F-score on residues. The results are comparable to other algorithms suggesting that our pseudo-energy model is close to the actual physical model. We test our classification approach and show that it is able to reject α-helical bundles with 100% accuracy and β-barrel lipocalins with 97% accuracy. Conclusions We show that it is possible to design models for classification and structure prediction for transmembrane β-barrel proteins which do not depend essentially on training sets but on combinatorial properties of the structures to be proved. These models are fairly accurate, robust and can be run very efficiently on PC-like computers. Such models are useful for the genome

  4. SENTINEL-2 Level 1 Products and Image Processing Performances

    NASA Astrophysics Data System (ADS)

    Baillarin, S. J.; Meygret, A.; Dechoz, C.; Petrucci, B.; Lacherade, S.; Tremas, T.; Isola, C.; Martimort, P.; Spoto, F.

    2012-07-01

    In partnership with the European Commission and in the frame of the Global Monitoring for Environment and Security (GMES) program, the European Space Agency (ESA) is developing the Sentinel-2 optical imaging mission devoted to the operational monitoring of land and coastal areas. The Sentinel-2 mission is based on a satellites constellation deployed in polar sun-synchronous orbit. While ensuring data continuity of former SPOT and LANDSAT multi-spectral missions, Sentinel-2 will also offer wide improvements such as a unique combination of global coverage with a wide field of view (290 km), a high revisit (5 days with two satellites), a high resolution (10 m, 20 m and 60 m) and multi-spectral imagery (13 spectral bands in visible and shortwave infra-red domains). In this context, the Centre National d'Etudes Spatiales (CNES) supports ESA to define the system image products and to prototype the relevant image processing techniques. This paper offers, first, an overview of the Sentinel-2 system and then, introduces the image products delivered by the ground processing: the Level-0 and Level-1A are system products which correspond to respectively raw compressed and uncompressed data (limited to internal calibration purposes), the Level-1B is the first public product: it comprises radiometric corrections (dark signal, pixels response non uniformity, crosstalk, defective pixels, restoration, and binning for 60 m bands); and an enhanced physical geometric model appended to the product but not applied, the Level-1C provides ortho-rectified top of atmosphere reflectance with a sub-pixel multi-spectral and multi-date registration; a cloud and land/water mask is associated to the product. Note that the cloud mask also provides an indication about cirrus. The ground sampling distance of Level-1C product will be 10 m, 20 m or 60 m according to the band. The final Level-1C product is tiled following a pre-defined grid of 100x100 km2, based on UTM/WGS84 reference frame. The

  5. Level-1 pixel based tracking trigger algorithm for LHC upgrade

    NASA Astrophysics Data System (ADS)

    Moon, C.-S.; Savoy-Navarro, A.

    2015-10-01

    The Pixel Detector is the innermost detector of the tracking system of the Compact Muon Solenoid (CMS) experiment at CERN Large Hadron Collider (LHC) . It precisely determines the interaction point (primary vertex) of the events and the possible secondary vertexes due to heavy flavours (b and c quarks); it is part of the overall tracking system that allows reconstructing the tracks of the charged particles in the events and combined with the magnetic field to measure their momentum. The pixel detector allows measuring the tracks in the region closest to the interaction point. The Level-1 (real-time) pixel based tracking trigger is a novel trigger system that is currently being studied for the LHC upgrade. An important goal is developing real-time track reconstruction algorithms able to cope with very high rates and high flux of data in a very harsh environment. The pixel detector has an especially crucial role in precisely identifying the primary vertex of the rare physics events from the large pile-up (PU) of events. The goal of adding the pixel information already at the real-time level of the selection is to help reducing the total level-1 trigger rate while keeping an high selection capability. This is quite an innovative and challenging objective for the experiments upgrade for the High Luminosity LHC (HL-LHC) . The special case here addressed is the CMS experiment. This document describes exercises focusing on the development of a fast pixel track reconstruction where the pixel track matches with a Level-1 electron object using a ROOT-based simulation framework.

  6. Run 2 upgrades to the CMS Level-1 calorimeter trigger

    NASA Astrophysics Data System (ADS)

    Kreis, B.; Berryhill, J.; Cavanaugh, R.; Mishra, K.; Rivera, R.; Uplegger, L.; Apanasevich, L.; Zhang, J.; Marrouche, J.; Wardle, N.; Aggleton, R.; Ball, F.; Brooke, J.; Newbold, D.; Paramesvaran, S.; Smith, D.; Baber, M.; Bundock, A.; Citron, M.; Elwood, A.; Hall, G.; Iles, G.; Laner, C.; Penning, B.; Rose, A.; Tapper, A.; Foudas, C.; Beaudette, F.; Cadamuro, L.; Mastrolorenzo, L.; Romanteau, T.; Sauvan, J. B.; Strebler, T.; Zabi, A.; Barbieri, R.; Cali, I. A.; Innocenti, G. M.; Lee, Y.-J.; Roland, C.; Wyslouch, B.; Guilbaud, M.; Li, W.; Northup, M.; Tran, B.; Durkin, T.; Harder, K.; Harper, S.; Shepherd-Themistocleous, C.; Thea, A.; Williams, T.; Cepeda, M.; Dasu, S.; Dodd, L.; Forbes, R.; Gorski, T.; Klabbers, P.; Levine, A.; Ojalvo, I.; Ruggles, T.; Smith, N.; Smith, W.; Svetek, A.; Tikalsky, J.; Vicente, M.

    2016-01-01

    The CMS Level-1 calorimeter trigger is being upgraded in two stages to maintain performance as the LHC increases pile-up and instantaneous luminosity in its second run. In the first stage, improved algorithms including event-by-event pile-up corrections are used. New algorithms for heavy ion running have also been developed. In the second stage, higher granularity inputs and a time-multiplexed approach allow for improved position and energy resolution. Data processing in both stages of the upgrade is performed with new, Xilinx Virtex-7 based AMC cards.

  7. MODIS. Volume 1: MODIS level 1A software baseline requirements

    NASA Technical Reports Server (NTRS)

    Masuoka, Edward; Fleig, Albert; Ardanuy, Philip; Goff, Thomas; Carpenter, Lloyd; Solomon, Carl; Storey, James

    1994-01-01

    This document describes the level 1A software requirements for the moderate resolution imaging spectroradiometer (MODIS) instrument. This includes internal and external requirements. Internal requirements include functional, operational, and data processing as well as performance, quality, safety, and security engineering requirements. External requirements include those imposed by data archive and distribution systems (DADS); scheduling, control, monitoring, and accounting (SCMA); product management (PM) system; MODIS log; and product generation system (PGS). Implementation constraints and requirements for adapting the software to the physical environment are also included.

  8. Long-term potentiation in the neonatal rat barrel cortex in vivo.

    PubMed

    An, Shuming; Yang, Jenq-Wei; Sun, Haiyan; Kilb, Werner; Luhmann, Heiko J

    2012-07-11

    Long-term potentiation (LTP) is important for the activity-dependent formation of early cortical circuits. In the neonatal rodent barrel cortex, LTP has been studied only in vitro. We combined voltage-sensitive dye imaging with extracellular multielectrode recordings to study whisker stimulation-induced LTP in the whisker-to-barrel cortex pathway of the neonatal rat barrel cortex in vivo. Single whisker stimulation at 2 Hz for 10 min induced an age-dependent expression of LTP in postnatal day (P) 0 to P14 rats, with the strongest expression of LTP at P3-P5. The magnitude of LTP was largest in the activated barrel-related column, smaller in the surrounding septal region, and no LTP could be observed in the neighboring barrel. Current source density analyses revealed an LTP-associated increase of synaptic current sinks in layer IV/lower layer II/III at P3-P5 and in the cortical plate/upper layer V at P0-P1. Our study demonstrates for the first time an age-dependent and spatially confined LTP in the barrel cortex of the newborn rat in vivo.

  9. Assembly of β-barrel proteins in the mitochondrial outer membrane.

    PubMed

    Höhr, Alexandra I C; Straub, Sebastian P; Warscheid, Bettina; Becker, Thomas; Wiedemann, Nils

    2015-01-01

    Mitochondria evolved through endosymbiosis of a Gram-negative progenitor with a host cell to generate eukaryotes. Therefore, the outer membrane of mitochondria and Gram-negative bacteria contain pore proteins with β-barrel topology. After synthesis in the cytosol, β-barrel precursor proteins are first transported into the mitochondrial intermembrane space. Folding and membrane integration of β-barrel proteins depend on the mitochondrial sorting and assembly machinery (SAM) located in the outer membrane, which is related to the β-barrel assembly machinery (BAM) in bacteria. The SAM complex recognizes β-barrel proteins by a β-signal in the C-terminal β-strand that is required to initiate β-barrel protein insertion into the outer membrane. In addition, the SAM complex is crucial to form membrane contacts with the inner mitochondrial membrane by interacting with the mitochondrial contact site and cristae organizing system (MICOS) and shares a subunit with the endoplasmic reticulum-mitochondria encounter structure (ERMES) that links the outer mitochondrial membrane to the endoplasmic reticulum (ER).

  10. Structural biology of membrane-intrinsic β-barrel enzymes: Sentinels of the bacterial outer membrane

    PubMed Central

    Bishop, Russell E.

    2016-01-01

    The outer membranes of Gram-negative bacteria are replete with integral membrane proteins that exhibit antiparallel β-barrel structures, but very few of these proteins function as enzymes. In Escherichia coli, only three β-barrel enzymes are known to exist in the outer membrane; these are the phospholipase OMPLA, the protease OmpT, and the phospholipid::lipid A palmitoyltransferase PagP, all of which have been characterized at the structural level. Structural details have also emerged for the outer membrane β-barrel enzyme PagL, a lipid A 3-O-deacylase from Pseudomonas aeruginosa. Lipid A can be further modified in the outer membrane by two β-barrel enzymes of unknown structure; namely, the Salmonella enterica 3′-acyloxyacyl hydrolase LpxR, and the Rhizobium leguminosarum oxidase LpxQ, which employs O2 to convert the proximal glucosamine unit of lipid A into 2-aminogluconate. Structural biology now indicates how β-barrel enzymes can function as sentinels that remain dormant when the outer membrane permeability barrier is intact. Host immune defenses and antibiotics that perturb this barrier can directly trigger β-barrel enzymes in the outer membrane. The ensuing adaptive responses occur instantaneously and rapidly outpace other signal transduction mechanisms that similarly function to restore the outer membrane permeability barrier. PMID:17880914

  11. The serotonin reuptake inhibitor citalopram suppresses activity in the neonatal rat barrel cortex in vivo.

    PubMed

    Akhmetshina, Dinara; Zakharov, Andrei; Vinokurova, Daria; Nasretdinov, Azat; Valeeva, Guzel; Khazipov, Roustem

    2016-06-01

    Inhibition of serotonin uptake, which causes an increase in extracellular serotonin levels, disrupts the development of thalamocortical barrel maps in neonatal rodents. Previous in vitro studies have suggested that the disruptive effect of excessive serotonin on barrel map formation involves a depression at thalamocortical synapses. However, the effects of serotonin uptake inhibitors on the early thalamocortical activity patterns in the developing barrel cortex in vivo remain largely unknown. Here, using extracellular recordings of the local field potentials and multiple unit activity (MUA) we explored the effects of the selective serotonin reuptake inhibitor (SSRI) citalopram (10-20mg/kg, intraperitoneally) on sensory evoked activity in the barrel cortex of neonatal (postnatal days P2-5) rats in vivo. We show that administration of citalopram suppresses the amplitude and prolongs the delay of the sensory evoked potentials, reduces the power and frequency of the early gamma oscillations, and suppresses sensory evoked and spontaneous neuronal firing. In the adolescent P21-29 animals, citalopram affected neither sensory evoked nor spontaneous activity in barrel cortex. We suggest that suppression of the early thalamocortical activity patterns contributes to the disruption of the barrel map development caused by SSRIs and other conditions elevating extracellular serotonin levels. PMID:27016034

  12. Hazardous materials readiness of United States level 1 trauma centers.

    PubMed

    Ghilarducci, D P; Pirrallo, R G; Hegmann, K T

    2000-07-01

    Injuries caused by hazardous materials (hazmat) accidents are common in the United States, and emergency departments should be capable of decontaminating these patients. There are, however, no national studies that assess emergency department preparedness. The purpose of this survey was to assess the hazmat readiness of US Level 1 trauma centers (TCs). All 1996 Hospital Blue Book TCs (256) were queried by anonymous survey; 61% (156) responded to the survey. The TCs treated 43,046 +/- 28,455 patients (median, 40,500; range, 600 to 220,000); 15 +/- 29 (median, 6; range, 0 to 200) were hazmat-contaminated. Only 6% acknowledged having all necessary equipment required for safe decontamination. Many (83%) had hazmat response plans, but few (30%) of these plans were complete. Approximately 36% of the staff had received training. Thirteen staff required medical attention themselves after rendering care to a contaminated patient. Only 58% of the TCs performed a single drill. The preparedness of US Level 1 TCs to safely decontaminate hazmat patients seems to be inadequate.

  13. System design and performances of ASTER Level-1 data processing

    NASA Astrophysics Data System (ADS)

    Nishida, Sumiyuki; Hachiya, Jun; Matsumoto, Ken; Fujisada, Hiroyuki; Kato, Masatane

    1998-12-01

    ASTER is a multispectral imager which covers wide spectral region from visible to thermal infrared with 14 spectral bands, and will fly on EOS-AM1 in 1999. To meet this wide spectral coverage, ASTER has three optical sensing subsystems (multi-telescope system), VNIR, SWIR and TIR. This multi- telescope configuration requires highly refined ground processing for the generation of Level-1 data products that are radiometrically calibrated and geometrically corrected. A prototype Level-1 processing software system is developed to satisfy these requirements. System design concept adopted includes; (1) 'Automatic Processing,' (2)'ALL-IN-ONE-CONCEPT' in which the processing is carried out using information included in Level-0 data product only, (3) 'MODULE INDEPENDENCE' in which only process control module independently control other modules to change any operational conditions. (4) 'FLEXIBILITY' in which important operation parameters are set from an external component to make the processing condition change easier. The adaptability and the performance of the developed software system are evaluated using simulation data.

  14. The Millennium Star Atlas

    NASA Astrophysics Data System (ADS)

    Sinnott, R. W.

    1997-08-01

    Derived from Hipparcos and Tycho observations, the Millennium Star Atlas is a set of 1548 charts covering the entire sky to about magnitude 11. It stands apart from all previous printed atlases in completeness to magnitude 10 and in uniformity around the sky. The generous chart scale has made possible a number of innovations never before seen in a star atlas: arrows on high-proper-motion stars, double-star ticks conveying separation and position angle for a specific modern epoch, distance labels for nearby stars, and variable stars coded by amplitude, period, and type. Among the nonstellar objects plotted, more than 8000 galaxies are shown with aspect ratio and orientation.

  15. The ATLAS trigger - commissioning with cosmic rays

    NASA Astrophysics Data System (ADS)

    Boyd, J.

    2008-07-01

    The ATLAS detector at CERN's LHC will be exposed to proton-proton collisions from beams crossing at 40 MHz. At the design luminosity there are roughly 23 collisions per bunch crossing. ATLAS has designed a three-level trigger system to select potentially interesting events. The first-level trigger, implemented in custom-built electronics, reduces the incoming rate to less than 100 kHz with a total latency of less than 2.5μs. The next two trigger levels run in software on commercial PC farms. They reduce the output rate to 100-200 Hz. In preparation for collision data-taking which is scheduled to commence in May 2008, several cosmic-ray commissioning runs have been performed. Among the first sub-detectors available for commissioning runs are parts of the barrel muon detector including the RPC detectors that are used in the first-level trigger. Data have been taken with a full slice of the muon trigger and readout chain, from the detectors in one sector of the RPC system, to the second-level trigger algorithms and the data-acquisition system. The system is being prepared to include the inner-tracking detector in the readout and second-level trigger. We will present the status and results of these cosmic-ray based commissioning activities. This work will prove to be invaluable not only during the commissioning phase but also for cosmic-ray data-taking during the normal running for detector performance studies.

  16. The FET1 Level 1 Method: Theory and Implementation

    SciTech Connect

    Kamath, C.

    2000-03-01

    This report summarizes our experiences in developing a prototype serial code for the implementation of the Level 1 Finite Element Tearing and Interconnecting (FETI) method. This method is a non-overlapping domain-decomposition scheme for the parallel solution of ill-conditioned systems of linear equations arising in structural mechanics problems. The FETI method has been shown to be numerically scalable for second order elasticity and fourth order plate and shell problems. In this report, we first outline the theory underlying the FETI method and discuss the approaches taken to improve the robustness and convergence of the method. We next provide implementation details, focusing on our serial prototype code. Finally, we present experimental results, followed by a summary of our observations.

  17. BOREAS AFM-5 Level-1 Upper Air Network Data

    NASA Technical Reports Server (NTRS)

    Barr, Alan; Hrynkiw, Charmaine; Newcomer, Jeffrey A. (Editor); Hall, Forrest G. (Editor); Smith, David E. (Technical Monitor)

    2000-01-01

    The Boreal Ecosystem-Atmosphere Study (BOREAS) Airborne Fluxes and Meteorology (AFM)-5 team collected and processed data from the numerous radiosonde flights during the project. The goals of the AFM-05 team were to provide large-scale definition of the atmosphere by supplementing the existing Atmospheric Environment Service (AES) aerological network, both temporally and spatially. This data set includes basic upper-air parameters collected from the network of upper-air stations during the 1993, 1994, and 1996 field campaigns over the entire study region. The data are contained in tabular ASCII files. The level-1 upper-air network data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files also are available on a CD-ROM (see document number 20010000884).

  18. SENTINEL-2 image quality and level 1 processing

    NASA Astrophysics Data System (ADS)

    Meygret, Aimé; Baillarin, Simon; Gascon, Ferran; Hillairet, Emmanuel; Dechoz, Cécile; Lacherade, Sophie; Martimort, Philippe; Spoto, François; Henry, Patrice; Duca, Riccardo

    2009-08-01

    In the framework of the Global Monitoring for Environment and Security (GMES) programme, the European Space Agency (ESA) in partnership with the European Commission (EC) is developing the SENTINEL-2 optical imaging mission devoted to the operational monitoring of land and coastal areas. The Sentinel-2 mission is based on a twin satellites configuration deployed in polar sun-synchronous orbit and is designed to offer a unique combination of systematic global coverage with a wide field of view (290km), a high revisit (5 days at equator with two satellites), a high spatial resolution (10m, 20m and 60 m) and multi-spectral imagery (13 bands in the visible and the short wave infrared spectrum). SENTINEL-2 will ensure data continuity of SPOT and LANDSAT multispectral sensors while accounting for future service evolution. This paper presents the main geometric and radiometric image quality requirements for the mission. The strong multi-spectral and multi-temporal registration requirements constrain the stability of the platform and the ground processing which will automatically refine the geometric physical model through correlation technics. The geolocation of the images will take benefits from a worldwide reference data set made of SENTINEL-2 data strips geolocated through a global space-triangulation. These processing are detailed through the description of the level 1C production which will provide users with ortho-images of Top of Atmosphere reflectances. The huge amount of data (1.4 Tbits per orbit) is also a challenge for the ground processing which will produce at level 1C all the acquired data. Finally we discuss the different geometric (line of sight, focal plane cartography, ...) and radiometric (relative and absolute camera sensitivity) in-flight calibration methods that will take advantage of the on-board sun diffuser and ground targets to answer the severe mission requirements.

  19. EOS MLS Level 1B Data Processing Software. Version 3

    NASA Technical Reports Server (NTRS)

    Perun, Vincent S.; Jarnot, Robert F.; Wagner, Paul A.; Cofield, Richard E., IV; Nguyen, Honghanh T.; Vuu, Christina

    2011-01-01

    This software is an improvement on Version 2, which was described in EOS MLS Level 1B Data Processing, Version 2.2, NASA Tech Briefs, Vol. 33, No. 5 (May 2009), p. 34. It accepts the EOS MLS Level 0 science/engineering data, and the EOS Aura spacecraft ephemeris/attitude data, and produces calibrated instrument radiances and associated engineering and diagnostic data. This version makes the code more robust, improves calibration, provides more diagnostics outputs, defines the Galactic core more finely, and fixes the equator crossing. The Level 1 processing software manages several different tasks. It qualifies each data quantity using instrument configuration and checksum data, as well as data transmission quality flags. Statistical tests are applied for data quality and reasonableness. The instrument engineering data (e.g., voltages, currents, temperatures, and encoder angles) is calibrated by the software, and the filter channel space reference measurements are interpolated onto the times of each limb measurement with the interpolates being differenced from the measurements. Filter channel calibration target measurements are interpolated onto the times of each limb measurement, and are used to compute radiometric gain. The total signal power is determined and analyzed by each digital autocorrelator spectrometer (DACS) during each data integration. The software converts each DACS data integration from an autocorrelation measurement in the time domain into a spectral measurement in the frequency domain, and estimates separately the spectrally, smoothly varying and spectrally averaged components of the limb port signal arising from antenna emission and scattering effects. Limb radiances are also calibrated.

  20. Solution NMR resonance assignment strategies for β-barrel membrane proteins.

    PubMed

    Fox, Daniel A; Columbus, Linda

    2013-08-01

    Membrane proteins in detergent micelles are large and dynamic complexes that present challenges for solution NMR investigations such as spectral overlap and line broadening. In this study, multiple methods are introduced to facilitate resonance assignment of β-barrel membrane proteins using Opa60 from Neisseria gonorrhoeae as a model system. Opa60 is an eight-stranded β-barrel with long extracellular loops (∼63% of the protein) that engage host receptors and induce engulfment of the bacterium. The NMR spectra of Opa60 in detergent micelles exhibits significant spectral overlap and resonances corresponding to the loop regions had variable line widths, which interfered with a complete assignment of the protein. To assign the β-barrel residues, trypsin cleavage was used to remove much of the extracellular loops while preserving the detergent solubilized β-barrel. The removal of the loop resonances significantly improved the assignment of the Opa60 β-barrel region (97% of the resonances corresponding to the β-barrel and periplasmic turns were assigned). For the loop resonance assignments, two strategies were implemented; modulating temperature and synthetic peptides. Lowering the temperature broadened many peaks beyond detection and simplified the spectra to only the most dynamic regions of the loops facilitating 27 loop resonances to be assigned. To further assign functionally important and unstructured regions of the extracellular loops, a synthetic 20 amino acid peptide was synthesized and had nearly complete spectral overlap with the full-length protein allowing 17 loop resonances to be assigned. Collectively, these strategies are effective tools that may accelerate solution NMR structure determination of β-barrel membrane proteins.

  1. Solution NMR resonance assignment strategies for β-barrel membrane proteins

    PubMed Central

    Fox, Daniel A; Columbus, Linda

    2013-01-01

    Membrane proteins in detergent micelles are large and dynamic complexes that present challenges for solution NMR investigations such as spectral overlap and line broadening. In this study, multiple methods are introduced to facilitate resonance assignment of β-barrel membrane proteins using Opa60 from Neisseria gonorrhoeae as a model system. Opa60 is an eight-stranded β-barrel with long extracellular loops (∼63% of the protein) that engage host receptors and induce engulfment of the bacterium. The NMR spectra of Opa60 in detergent micelles exhibits significant spectral overlap and resonances corresponding to the loop regions had variable line widths, which interfered with a complete assignment of the protein. To assign the β-barrel residues, trypsin cleavage was used to remove much of the extracellular loops while preserving the detergent solubilized β-barrel. The removal of the loop resonances significantly improved the assignment of the Opa60 β-barrel region (97% of the resonances corresponding to the β-barrel and periplasmic turns were assigned). For the loop resonance assignments, two strategies were implemented; modulating temperature and synthetic peptides. Lowering the temperature broadened many peaks beyond detection and simplified the spectra to only the most dynamic regions of the loops facilitating 27 loop resonances to be assigned. To further assign functionally important and unstructured regions of the extracellular loops, a synthetic 20 amino acid peptide was synthesized and had nearly complete spectral overlap with the full-length protein allowing 17 loop resonances to be assigned. Collectively, these strategies are effective tools that may accelerate solution NMR structure determination of β-barrel membrane proteins. PMID:23754333

  2. ATLAS Metadata Task Force

    SciTech Connect

    ATLAS Collaboration; Costanzo, D.; Cranshaw, J.; Gadomski, S.; Jezequel, S.; Klimentov, A.; Lehmann Miotto, G.; Malon, D.; Mornacchi, G.; Nemethy, P.; Pauly, T.; von der Schmitt, H.; Barberis, D.; Gianotti, F.; Hinchliffe, I.; Mapelli, L.; Quarrie, D.; Stapnes, S.

    2007-04-04

    This document provides an overview of the metadata, which are needed to characterizeATLAS event data at different levels (a complete run, data streams within a run, luminosity blocks within a run, individual events).

  3. Diabetes Interactive Atlas

    PubMed Central

    Burrows, Nilka R.; Geiss, Linda S.

    2014-01-01

    The Diabetes Interactive Atlas is a recently released Web-based collection of maps that allows users to view geographic patterns and examine trends in diabetes and its risk factors over time across the United States and within states. The atlas provides maps, tables, graphs, and motion charts that depict national, state, and county data. Large amounts of data can be viewed in various ways simultaneously. In this article, we describe the design and technical issues for developing the atlas and provide an overview of the atlas’ maps and graphs. The Diabetes Interactive Atlas improves visualization of geographic patterns, highlights observation of trends, and demonstrates the concomitant geographic and temporal growth of diabetes and obesity. PMID:24503340

  4. ATLAS@AWS

    NASA Astrophysics Data System (ADS)

    Gehrcke, Jan-Philip; Kluth, Stefan; Stonjek, Stefan

    2010-04-01

    We show how the ATLAS offline software is ported on the Amazon Elastic Compute Cloud (EC2). We prepare an Amazon Machine Image (AMI) on the basis of the standard ATLAS platform Scientific Linux 4 (SL4). Then an instance of the SLC4 AMI is started on EC2 and we install and validate a recent release of the ATLAS offline software distribution kit. The installed software is archived as an image on the Amazon Simple Storage Service (S3) and can be quickly retrieved and connected to new SL4 AMI instances using the Amazon Elastic Block Store (EBS). ATLAS jobs can then configure against the release kit using the ATLAS configuration management tool (cmt) in the standard way. The output of jobs is exported to S3 before the SL4 AMI is terminated. Job status information is transferred to the Amazon SimpleDB service. The whole process of launching instances of our AMI, starting, monitoring and stopping jobs and retrieving job output from S3 is controlled from a client machine using python scripts implementing the Amazon EC2/S3 API via the boto library working together with small scripts embedded in the SL4 AMI. We report our experience with setting up and operating the system using standard ATLAS job transforms.

  5. Histochemical changes in cytochrome oxidase of cortical barrels after vibrissal removal in neonatal and adult mice.

    PubMed Central

    Wong-Riley, M T; Welt, C

    1980-01-01

    The posteromedial barrel subfield of the somatosensory cortex of mice was examined histochemically for cytochrome oxidase activity (cytochrome c oxidase; ferrocytochrome c:oxygen oxidoreductase, EC 1.9.3.1). In normal mice a high enzymatic activity was found within the barrel hollows, rather than in the sides and septa. Electron microscopic examination indicated that within the hollows reactive mitochondria reside in many dendrites, in some axonal terminals, and in a few neuronal perikarya. After neonatal cauterization of selected row(s) of vibrissae, the corresponding row(s) of barrels appeared as narrowed fused band(s) and their cytochrome oxidase activity was much reduced. Removal of vibrissae in the adult, by either cauterization or repeated plucking, did not cause size changes of cortical barrels. However, there was a significant decrease in the oxidative enzymatic activity within these barrels. Thus, the deprivation of sensory input through damage to, or removal of, the peripheral sensory organ induces an enzymatic response in neurons that are at least two to three synapses away from the periphery. Images PMID:6246540

  6. Unusual mode of firearm injury from the recoiled rear end of a gun barrel.

    PubMed

    Agrawal, A; Malla, G; Joshi, S; Kumar, A; Koirala, S

    2008-09-01

    Atypical gunshot wounds are caused by a diverse set of parameters relating to weapons and ammunition. We report a previously-unreported and atypical mode of gunshot wound produced by a detached rear end of the barrel of a gun following accidental gun fire, and discuss the difficulties in the management. A 36-year-old man presented to the emergency department with an alleged history of injury on the forehead with the rear end of a gun barrel following accidental gunfire while cleaning the nozzle. Since the time of injury, the patient was in an altered sensorium and had weakness on the right side of the body. There was minimal but continuous bleeding from the wound, with extrusion of brain matter. Skull radiograph showed that the rear end of the barrel had entered the left frontal bone, with associated depressed fracture of the frontal bone. The patient underwent a bicoronal, bifrontal craniotomy with a T-shaped extension towards the barrel to facilitate the reflection of the scalp flap and to avoid any movement of the barrel as it might further injure the brain. Necrotic brain, dura and bone pieces were removed. The patient was doing well at follow-up except for mild residual motor deficits. This case illustrates that while working with limited facilities, particularly in underdeveloped countries, a careful clinical assessment, interpretation of available images and a judicious operative approach can help to save the patient.

  7. Persistence of biological traces in gun barrels after fatal contact shots.

    PubMed

    Schyma, Christian; Madea, Burkhard; Courts, Cornelius

    2013-01-01

    In the majority of cases suicidal shots are put to the head. Typically the gun's muzzle is held against the head. The aim of the present prospective study was to investigate whether victim DNA could reliably be recovered from the inside of the barrels of firearms that were used in 20 cases of homicidal or suicidal close contact shots. Additionally, it was investigated whether such biological traces were eliminated by subsequent firing. After autopsy sterile swabs were used to collect samples from the anterior part of the barrel thereby avoiding the muzzle. In some cases prior endoscopic inspection had revealed traces of blood and soft tissue in the barrel. For 16 cases, another swab was used to also collect sample from the posterior part of the barrel entering from its rear end. Then one shot was fired through the weapon using the same ammunition as in the suicidal shot and the sampling procedure was repeated. DNA was extracted using a magnetic beads based protocol, quantified, and STR-systems were amplified using several commercially available multiplex-STR-PCR-kits. For samples taken after the first shot DNA-analysis yielded STR profiles eligible for reliable individualization in 17 of 20 cases. After a second shot had been fired 8 or more STR systems were amplified successfully in 14 of 20 barrels.

  8. Charge collection and field profile studies of heavily irradiated strip sensors for the ATLAS inner tracker upgrade

    NASA Astrophysics Data System (ADS)

    Hara, K.; Allport, P. P.; Baca, M.; Broughton, J.; Chisholm, A.; Nikolopoulos, K.; Pyatt, S.; Thomas, J. P.; Wilson, J. A.; Kierstead, J.; Kuczewski, P.; Lynn, D.; Arratia, M.; Hommels, L. B. A.; Ullan, M.; Bloch, I.; Gregor, I. M.; Tackmann, K.; Trofimov, A.; Yildirim, E.; Hauser, M.; Jakobs, K.; Kuehn, S.; Mahboubi, K.; Mori, R.; Parzefall, U.; Clark, A.; Ferrere, D.; Gonzalez Sevilla, S.; Ashby, J.; Blue, A.; Bates, R.; Buttar, C.; Doherty, F.; McMullen, T.; McEwan, F.; O'Shea, V.; Kamada, S.; Yamamura, K.; Ikegami, Y.; Nakamura, K.; Takubo, Y.; Unno, Y.; Takashima, R.; Chilingarov, A.; Fox, H.; Affolder, A. A.; Casse, G.; Dervan, P.; Forshaw, D.; Greenall, A.; Wonsak, S.; Wormald, M.; Cindro, V.; Kramberger, G.; Mandić, I.; Mikuž, M.; Gorelov, I.; Hoeferkamp, M.; Palni, P.; Seidel, S.; Taylor, A.; Toms, K.; Wang, R.; Hessey, N. P.; Valencic, N.; Hanagaki, K.; Dolezal, Z.; Kodys, P.; Bohm, J.; Mikestikova, M.; Bevan, A.; Beck, G.; Milke, C.; Domingo, M.; Fadeyev, V.; Galloway, Z.; Hibbard-Lubow, D.; Liang, Z.; Sadrozinski, H. F.-W.; Seiden, A.; To, K.; French, R.; Hodgson, P.; Marin-Reyes, H.; Parker, K.; Jinnouchi, O.; Hara, K.; Sato, K.; Sato, K.; Hagihara, M.; Iwabuchi, S.; Bernabeu, J.; Civera, J. V.; Garcia, C.; Lacasta, C.; Marti i. Garcia, S.; Rodriguez, D.; Santoyo, D.; Solaz, C.; Soldevila, U.

    2016-09-01

    The ATLAS group has evaluated the charge collection in silicon microstrip sensors irradiated up to a fluence of 1 ×1016 neq/cm2, exceeding the maximum of 1.6 ×1015 neq/cm2 expected for the strip tracker during the high luminosity LHC (HL-LHC) period including a safety factor of 2. The ATLAS12, n+-on-p type sensor, which is fabricated by Hamamatsu Photonics (HPK) on float zone (FZ) substrates, is the latest barrel sensor prototype. The charge collection from the irradiated 1×1 cm2 barrel test sensors has been evaluated systematically using penetrating β-rays and an Alibava readout system. The data obtained at different measurement sites are compared with each other and with the results obtained from the previous ATLAS07 design. The results are very consistent, in particular, when the deposit charge is normalized by the sensor's active thickness derived from the edge transient current technique (edge-TCT) measurements. The measurements obtained using β-rays are verified to be consistent with the measurements using an electron beam. The edge-TCT is also effective for evaluating the field profiles across the depth. The differences between the irradiated ATLAS07 and ATLAS12 samples have been examined along with the differences among the samples irradiated with different radiation sources: neutrons, protons, and pions. The studies of the bulk properties of the devices show that the devices can yield a sufficiently large signal for the expected fluence range in the HL-LHC, thereby acting as precision tracking sensors.

  9. Cryogenic Tests of the ATLAS Liquid Argon Calorimeter

    SciTech Connect

    Bremer, J.; Fabre, C.; Passardi, G.; Chalifour, M.

    2006-04-27

    The ATLAS liquid argon calorimeter consists of the barrel and two end-cap detectors housed in three independent cryostats filled with a total volume of 78 m3 of liquid argon. During cool-down the temperature differences in the composite structure of the detectors must be kept within strict limits to avoid excessive mechanical stresses and relative displacements. During normal operation the formation of gas bubbles, which are detrimental to the functioning of the detector, must be prevented and temperature gradients of less than 0.7 K across the argon bath are mandatory due to the temperature dependence of the energy measurements. Between April 2004 and May 2005 the barrel (120 t) and one end-cap (219 t) underwent qualification tests at the operating temperature of 87.3 K using a dedicated test facility at ground level. These tests provided a validation of the cooling methods to be adopted in the final underground configuration. In total 6.9 GJ and 15.7 GJ were extracted from the calorimeters and a temperature uniformity of the argon bath of less than 0.4 K was achieved.

  10. Distributed Wireless Monitoring System for Ullage and Temperature in Wine Barrels.

    PubMed

    Zhang, Wenqi; Skouroumounis, George K; Monro, Tanya M; Taylor, Dennis

    2015-08-10

    This paper presents a multipurpose and low cost sensor for the simultaneous monitoring of temperature and ullage of wine in barrels in two of the most important stages of winemaking, that being fermentation and maturation. The distributed sensor subsystem is imbedded within the bung of the barrel and runs on battery for a period of at least 12 months and costs around $27 AUD for all parts. In addition, software was designed which allows for the remote transmission and easy visual interpretation of the data for the winemaker. Early warning signals can be sent when the temperature or ullage deviates from a winemakers expectations so remedial action can be taken, such as when topping is required or the movement of the barrels to a cooler cellar location. Such knowledge of a wine's properties or storage conditions allows for a more precise control of the final wine quality.

  11. Beta-Barrel Scaffold of Fluorescent Proteins: Folding, Stability and Role in Chromophore Formation

    PubMed Central

    Stepanenko, Olesya V.; Stepanenko, Olga V.; Kuznetsova, Irina M.; Verkhusha, Vladislav V.; Turoverov, Konstantin K.

    2013-01-01

    This review focuses on the current view of the interaction between the β-barrel scaffold of fluorescent proteins and their unique chromophore located in the internal helix. The chromophore originates from the polypeptide chain and its properties are influenced by the surrounding protein matrix of the β-barrel. On the other hand, it appears that a chromophore tightens the β-barrel scaffold and plays a crucial role in its stability. Furthermore, the presence of a mature chromophore causes hysteresis of protein unfolding and refolding. We survey studies measuring protein unfolding and refolding using traditional methods as well as new approaches, such as mechanical unfolding and reassembly of truncated fluorescent proteins. We also analyze models of fluorescent protein unfolding and refolding obtained through different approaches, and compare the results of protein folding in vitro to co-translational folding of a newly synthesized polypeptide chain. PMID:23351712

  12. Numerical classification of curvilinear structures for the identification of pistol barrels.

    PubMed

    Bolton-King, Rachel S; Bencsik, Martin; Evans, J Paul O; Smith, Clifton L; Allsop, Derek F; Painter, Jonathan D; Cranton, Wayne M

    2012-07-10

    This paper demonstrates a numerical pattern recognition method applied to curvilinear image structures. These structures are extracted from physical cross-sections of cast internal pistol barrel surfaces. Variations in structure arise from gun design and manufacturing method providing a basis for discrimination and identification. Binarised curvilinear land transition images are processed with fast Fourier transform on which principal component analysis is performed. One-way analysis of variance (95% confidence interval) concludes significant differentiation between 11 barrel manufacturers when calculating weighted Euclidean distance between any trio of land transitions and an average land transition for each barrel in the database. The proposed methodology is therefore a promising novel approach for the classification and identification of firearms.

  13. Distributed Wireless Monitoring System for Ullage and Temperature in Wine Barrels

    PubMed Central

    Zhang, Wenqi; Skouroumounis, George K.; Monro, Tanya M.; Taylor, Dennis K.

    2015-01-01

    This paper presents a multipurpose and low cost sensor for the simultaneous monitoring of temperature and ullage of wine in barrels in two of the most important stages of winemaking, that being fermentation and maturation. The distributed sensor subsystem is imbedded within the bung of the barrel and runs on battery for a period of at least 12 months and costs around $27 AUD for all parts. In addition, software was designed which allows for the remote transmission and easy visual interpretation of the data for the winemaker. Early warning signals can be sent when the temperature or ullage deviates from a winemakers expectations so remedial action can be taken, such as when topping is required or the movement of the barrels to a cooler cellar location. Such knowledge of a wine’s properties or storage conditions allows for a more precise control of the final wine quality. PMID:26266410

  14. HHrep: de novo protein repeat detection and the origin of TIM barrels.

    PubMed

    Söding, Johannes; Remmert, Michael; Biegert, Andreas

    2006-07-01

    HHrep is a web server for the de novo identification of repeats in protein sequences, which is based on the pairwise comparison of profile hidden Markov models (HMMs). Its main strength is its sensitivity, allowing it to detect highly divergent repeat units in protein sequences whose repeats could as yet only be detected from their structures. Examples include sequences with beta-propellor fold, ferredoxin-like fold, double psi barrels or (betaalpha)8 (TIM) barrels. We illustrate this with proteins from four superfamilies of TIM barrels by revealing a clear 4- and 8-fold symmetry, which we detect solely from their sequences. This symmetry might be the trace of an ancient origin through duplication of a betaalphabetaalpha or betaalpha unit. HHrep can be accessed at http://hhrep.tuebingen.mpg.de.

  15. Level 1 Tornado PRA for the High Flux Beam Reactor

    SciTech Connect

    Bozoki, G.E.; Conrad, C.S.

    1994-05-01

    This report describes a risk analysis primarily directed at providing an estimate for the frequency of tornado induced damage to the core of the High Flux Beam Reactor (HFBR), and thus it constitutes a Level 1 Probabilistic Risk Assessment (PRA) covering tornado induced accident sequences. The basic methodology of the risk analysis was to develop a ``tornado specific`` plant logic model that integrates the internal random hardware failures with failures caused externally by the tornado strike and includes operator errors worsened by the tornado modified environment. The tornado hazard frequency, as well as earlier prepared structural and equipment fragility data, were used as input data to the model. To keep modeling/calculational complexity as simple as reasonable a ``bounding`` type, slightly conservative, approach was applied. By a thorough screening process a single dominant initiating event was selected as a representative initiator, defined as: ``Tornado Induced Loss of Offsite Power.`` The frequency of this initiator was determined to be 6.37E-5/year. The safety response of the HFBR facility resulted in a total Conditional Core Damage Probability of .621. Thus, the point estimate of the HFBR`s Tornado Induced Core Damage Frequency (CDF) was found to be: (CDF){sub Tornado} = 3.96E-5/year. This value represents only 7.8% of the internal CDF and thus is considered to be a small contribution to the overall facility risk expressed in terms of total Core Damage Frequency. In addition to providing the estimate of (CDF){sub Tornado}, the report documents, the relative importance of various tornado induced system, component, and operator failures that contribute most to (CDF){sub Tornado}.

  16. Advanced accident sequence precursor analysis level 1 models

    SciTech Connect

    Sattison, M.B.; Thatcher, T.A.; Knudsen, J.K.; Schroeder, J.A.; Siu, N.O.

    1996-03-01

    INEL has been involved in the development of plant-specific Accident Sequence Precursor (ASP) models for the past two years. These models were developed for use with the SAPHIRE suite of PRA computer codes. They contained event tree/linked fault tree Level 1 risk models for the following initiating events: general transient, loss-of-offsite-power, steam generator tube rupture, small loss-of-coolant-accident, and anticipated transient without scram. Early in 1995 the ASP models were revised based on review comments from the NRC and an independent peer review. These models were released as Revision 1. The Office of Nuclear Regulatory Research has sponsored several projects at the INEL this fiscal year to further enhance the capabilities of the ASP models. Revision 2 models incorporates more detailed plant information into the models concerning plant response to station blackout conditions, information on battery life, and other unique features gleaned from an Office of Nuclear Reactor Regulation quick review of the Individual Plant Examination submittals. These models are currently being delivered to the NRC as they are completed. A related project is a feasibility study and model development of low power/shutdown (LP/SD) and external event extensions to the ASP models. This project will establish criteria for selection of LP/SD and external initiator operational events for analysis within the ASP program. Prototype models for each pertinent initiating event (loss of shutdown cooling, loss of inventory control, fire, flood, seismic, etc.) will be developed. A third project concerns development of enhancements to SAPHIRE. In relation to the ASP program, a new SAPHIRE module, GEM, was developed as a specific user interface for performing ASP evaluations. This module greatly simplifies the analysis process for determining the conditional core damage probability for a given combination of initiating events and equipment failures or degradations.

  17. Validation of the ASTER instrument level 1A scene geometry

    USGS Publications Warehouse

    Kieffer, H.H.; Mullins, K.F.; MacKinnon, D.J.

    2008-01-01

    An independent assessment of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instrument geometry was undertaken by the U.S. ASTER Team, to confirm the geometric correction parameters developed and applied to Level 1A (radiometrically and geometrically raw with correction parameters appended) ASTER data. The goal was to evaluate the geometric quality of the ASTER system and the stability of the Terra spacecraft. ASTER is a 15-band system containing optical instruments with resolutions from 15- to 90-meters; all geometrically registered products are ultimately tied to the 15-meter Visible and Near Infrared (VNIR) sub-system. Our evaluation process first involved establishing a large database of Ground Control Points (GCP) in the mid-western United States; an area with features of an appropriate size for spacecraft instrument resolutions. We used standard U.S. Geological Survey (USGS) Digital Orthophoto Quads (DOQS) of areas in the mid-west to locate accurate GCPs by systematically identifying road intersections and recording their coordinates. Elevations for these points were derived from USGS Digital Elevation Models (DEMS). Road intersections in a swath of nine contiguous ASTER scenes were then matched to the GCPs, including terrain correction. We found no significant distortion in the images; after a simple image offset to absolute position, the RMS residual of about 200 points per scene was less than one-half a VNIR pixel. Absolute locations were within 80 meters, with a slow drift of about 10 meters over the entire 530-kilometer swath. Using strictly simultaneous observations of scenes 370 kilometers apart, we determined a stereo angle correction of 0.00134 degree with an accuracy of one microradian. The mid-west GCP field and the techniques used here should be widely applicable in assessing other spacecraft instruments having resolutions from 5 to 50-meters. ?? 2008 American Society for Photogrammetry and Remote Sensing.

  18. Persistence of biological traces in gun barrels--an approach to an experimental model.

    PubMed

    Courts, Cornelius; Madea, Burkhard; Schyma, Christian

    2012-05-01

    Traces of backspatter in gun barrels after homicidal or suicidal contact shots may be a valuable source of forensic evidence. Yet, a systematic investigation of the persistence and durability of DNA from biological traces in gun barrels is lacking. Our aim was to generate a realistic model to emulate blood and tissue spatters in gun barrels generated by contact gunshots at biological targets and to analyse the persistence and typability of DNA recovered from such stains. Herein, we devise and evaluate three different models for the emulation of backspatter from contact shots: a gelatine-based model with embedded blood bags, a model based on a spongious matrix soaked with blood and covered with a thin plastic membrane and a head model consisting of an acrylic half sphere filled with ballistic gelatine and with blood bags attached to the sphere under a 3-mm silicone layer. The sampling procedure for all three models: a first shot was fired with several types of guns at each model construction and subsequently a second shot was fired at a backstop. Blood samples were collected after each shot by probing the inner surface of the front and rear end of the respective gun barrel with a sterile swab. DNA was then extracted and quantified and up to 20 different short tandem repeat (STR) systems were amplified to generate DNA profiles. Although DNA quantity and STR typing results were heterogenous between the models, all models succeeded in delivering full STR profiles even after more than one shot. We conclude that biological traces in gun barrels are robust and accessible to forensic analysis and that systematic examination of the inside of gun barrels may be advisable for forensic casework. PMID:22160245

  19. Persistence of biological traces in gun barrels--an approach to an experimental model.

    PubMed

    Courts, Cornelius; Madea, Burkhard; Schyma, Christian

    2012-05-01

    Traces of backspatter in gun barrels after homicidal or suicidal contact shots may be a valuable source of forensic evidence. Yet, a systematic investigation of the persistence and durability of DNA from biological traces in gun barrels is lacking. Our aim was to generate a realistic model to emulate blood and tissue spatters in gun barrels generated by contact gunshots at biological targets and to analyse the persistence and typability of DNA recovered from such stains. Herein, we devise and evaluate three different models for the emulation of backspatter from contact shots: a gelatine-based model with embedded blood bags, a model based on a spongious matrix soaked with blood and covered with a thin plastic membrane and a head model consisting of an acrylic half sphere filled with ballistic gelatine and with blood bags attached to the sphere under a 3-mm silicone layer. The sampling procedure for all three models: a first shot was fired with several types of guns at each model construction and subsequently a second shot was fired at a backstop. Blood samples were collected after each shot by probing the inner surface of the front and rear end of the respective gun barrel with a sterile swab. DNA was then extracted and quantified and up to 20 different short tandem repeat (STR) systems were amplified to generate DNA profiles. Although DNA quantity and STR typing results were heterogenous between the models, all models succeeded in delivering full STR profiles even after more than one shot. We conclude that biological traces in gun barrels are robust and accessible to forensic analysis and that systematic examination of the inside of gun barrels may be advisable for forensic casework.

  20. Quantitative/Statistical Approach to Bullet-to-Firearm Identification with Consecutively Manufactured Barrels

    SciTech Connect

    Peter Striupaitis; R.E. Gaensslen

    2005-01-30

    Efforts to use objective image comparison and bullet scanning technologies to distinguish bullets from consecutively manufactured handgun barrels from two manufacturers gave mixed results. The ability of a technology to reliably distinguish between matching and non-matching bullets, where the non-matching bullets were as close in pattern to the matching ones as is probably possible, would provide evidence that the distinctions could be made ''objectively'', and independently of human eyes. That evidence is identical or very close to what seems to be needed to satisfy Daubert standards. It is fair to say that the FTI IBIS image comparison technology correctly distinguished between all the Springfield barrel bullets, and between most but not all of the HiPoint barrel bullets. In the HiPoint cases that were not distinguished 100% of the time, they would he distinguished correctly at least 83% of the time. These results, although obviously limited to the materials used in the comparisons, provide strong evidence that barrel-to-bullet matching is objectively reliable. The results with SciClops were less compelling. The results do not mean that bullet-to-barrel matching is not objectively reliable--rather, they mean that this version of the particular technology could not quite distinguish between these extremely similar yet different bullets as well as the image comparison technology did. In a number of cases, the numerical results made the correct distinctions, although they were close to one another. It is hard to say from this data that this technology differs in its ability to make distinctions between the manufacturers, because the results are very similar with both. The human examiner results were as expected. We did not expect any misidentifications, and there were not any. It would have been preferable to have a higher return rate, and thus more comparisons in the overall sample. As noted, the ''consecutively manufactured barrel exercise'' has been done before

  1. Observations of a solar storm from the stratosphere: The BARREL Mission

    NASA Astrophysics Data System (ADS)

    Halford, Alexa

    2016-07-01

    During the Balloon Array for Radiation belt Relativistic Electron Losses (BARREL) second campaign, BARREL observed with a single primary instrument, a 3"x3" NaI spectrometer measuring 20 keV - 10 MeV X-rays [Woodger et al 2015 JGR], portions of an entire solar storm. This very small event, in terms of geomagnetic activity, or one of the largest of the current solar cycle, in terms of solar energetic particle events, has given us a very clear set of observations of the response of the day side magnetosphere to the arrival of an interplanetary coronal mass ejection shock. The BARREL mission of opportunity working in tandem with the Van Allen Probes was designed to study the loss of radiation belt electrons to the ionosphere and upper atmosphere. However BARREL is able to see X-rays from a multitude of sources. During the second campaign, the Sun produced, and BARREL observed, an X-class flare [McGregor et al in prep.]. This was followed by BARREL observations of X-rays, gamma-rays, and directly injected protons from the solar energetic particle (SEP) event associated with the eruption from the Sun while simultaneously the Van Allen Probes observed the SEP protons in the inner magnetosphere [Halford et al 2016 submitted JGR]. Two days later the shock generated by the interplanetary coronal mass ejection (ICME-shock) hit the Earth while BARREL was in conjunction with the Van Allen Probes and GOES [Halford et al 2015 JGR]. Although this was a Mars directed CME and the Earth only received a glancing blow [Möstl et al 2015 Nat. Commun., Mays et al 2015 ApJ], the modest compression led to the formation of ultra low frequency (ULF) waves, electromagnetic ion cyclotron (EMIC) waves, and very low frequency (VLF) whistler mode waves [Halford and Mann 2016 submitted to JGR]. The combination of these waves and the enhancement of the local particle population led to precipitation of electrons remotely observed by BARREL. This was not a Halloween, Bastille Day, or one of the now

  2. Ectopic anus with barrel gun perineum rare type of anorectal anomaly.

    PubMed

    Chamaria, Komal; Shetty, Roshan

    2013-06-01

    Perineal ectopic anus in female infants is not a very uncommon congenital anorectal anomaly with opening into the low vaginal or vulvar region. However, ectopic anus with barrel gun perineum is a less common variety. Patients generally present with frequent history of constipation, but may seek medical help for just aesthetic reasons. We present here one such case of an asymptomatic seven years old female with the rare form of anterior ectopic anus with barrel gun perineum without any fistulous communications with an innovative method of demonstration of the anomaly by using ultrasound gel as rectal contrast in MRI pelvis.

  3. Conceptual Design of 25-Barrel Pellet Injector with Cycle Refrigerator for HL-2A Tokamak

    NASA Astrophysics Data System (ADS)

    Xiao, Zhenggui; Zhu, Genliang; Liu, Dequan

    2006-07-01

    The preliminary design of a multi-barrels pellet injector with cycle refrigerator as an advanced plasma-fuelling tool for HL-2A tokamak has been proposed. The design aims at precise temperature control, easy operation with high reliability and high flexibility. GM-cycle refrigerator and pipe-gun structure have been employed to produce 25 pellets in 25 gun barrels simultaneously and the design aims. have been accomplished. Prime design principle, engineering parameters, structure and layout of the cryostat components as well as calculation of heat load for the cryostat are presented.

  4. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.

    PubMed

    Garrow, Andrew G; Agnew, Alison; Westhead, David R

    2005-07-01

    TMB-Hunt is a program that uses a modified k-nearest neighbour (k-NN) algorithm to classify protein sequences as transmembrane beta-barrel (TMB) or non-TMB on the basis of whole sequence amino acid composition. By including differentially weighted amino acids, evolutionary information and by calibrating the scoring, a discrimination accuracy of 92.5% was achieved, as tested using a rigorous cross-validation procedure. The TMB-Hunt web server, available at www.bioinformatics.leeds.ac.uk/betaBarrel, allows screening of up to 10,000 sequences in a single query and provides results and key statistics in a simple colour coded format.

  5. Multiple brain atlas database and atlas-based neuroimaging system.

    PubMed

    Nowinski, W L; Fang, A; Nguyen, B T; Raphel, J K; Jagannathan, L; Raghavan, R; Bryan, R N; Miller, G A

    1997-01-01

    For the purpose of developing multiple, complementary, fully labeled electronic brain atlases and an atlas-based neuroimaging system for analysis, quantification, and real-time manipulation of cerebral structures in two and three dimensions, we have digitized, enhanced, segmented, and labeled the following print brain atlases: Co-Planar Stereotaxic Atlas of the Human Brain by Talairach and Tournoux, Atlas for Stereotaxy of the Human Brain by Schaltenbrand and Wahren, Referentially Oriented Cerebral MRI Anatomy by Talairach and Tournoux, and Atlas of the Cerebral Sulci by Ono, Kubik, and Abernathey. Three-dimensional extensions of these atlases have been developed as well. All two- and three-dimensional atlases are mutually preregistered and may be interactively registered with an actual patient's data. An atlas-based neuroimaging system has been developed that provides support for reformatting, registration, visualization, navigation, image processing, and quantification of clinical data. The anatomical index contains about 1,000 structures and over 400 sulcal patterns. Several new applications of the brain atlas database also have been developed, supported by various technologies such as virtual reality, the Internet, and electronic publishing. Fusion of information from multiple atlases assists the user in comprehensively understanding brain structures and identifying and quantifying anatomical regions in clinical data. The multiple brain atlas database and atlas-based neuroimaging system have substantial potential impact in stereotactic neurosurgery and radiotherapy by assisting in visualization and real-time manipulation in three dimensions of anatomical structures, in quantitative neuroradiology by allowing interactive analysis of clinical data, in three-dimensional neuroeducation, and in brain function studies.

  6. Distributed analysis in ATLAS

    NASA Astrophysics Data System (ADS)

    Dewhurst, A.; Legger, F.

    2015-12-01

    The ATLAS experiment accumulated more than 140 PB of data during the first run of the Large Hadron Collider (LHC) at CERN. The analysis of such an amount of data is a challenging task for the distributed physics community. The Distributed Analysis (DA) system of the ATLAS experiment is an established and stable component of the ATLAS distributed computing operations. About half a million user jobs are running daily on DA resources, submitted by more than 1500 ATLAS physicists. The reliability of the DA system during the first run of the LHC and the following shutdown period has been high thanks to the continuous automatic validation of the distributed analysis sites and the user support provided by a dedicated team of expert shifters. During the LHC shutdown, the ATLAS computing model has undergone several changes to improve the analysis workflows, including the re-design of the production system, a new analysis data format and event model, and the development of common reduction and analysis frameworks. We report on the impact such changes have on the DA infrastructure, describe the new DA components, and include recent performance measurements.

  7. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  8. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  9. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  10. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  11. An improved method for constructing and selectively silanizing double-barreled, neutral liquid-carrier, ion-selective microelectrodes

    PubMed Central

    Deveau, Jason S.T.; Grodzinski, Bernard

    2005-01-01

    We describe an improved, efficient and reliable method for the vapour-phase silanization of multi-barreled, ion-selective microelectrodes of which the silanized barrel(s) are to be filled with neutral liquid ion-exchanger (LIX). The technique employs a metal manifold to exclusively and simultaneously deliver dimethyldichlorosilane to only the ion-selective barrels of several multi-barreled microelectrodes. Compared to previously published methods the technique requires fewer procedural steps, less handling of individual microelectrodes, improved reproducibility of silanization of the selected microelectrode barrels and employs standard borosilicate tubing rather than the less-conventional theta-type glass. The electrodes remain stable for up to 3 weeks after the silanization procedure. The efficacy of a double-barreled electrode containing a proton ionophore in the ion-selective barrel is demonstrated in situ in the leaf apoplasm of pea (Pisum) and sunflower (Helianthus). Individual leaves were penetrated to depth of ~150 μm through the abaxial surface. Microelectrode readings remained stable after multiple impalements without the need for a stabilizing PVC matrix. PMID:16136222

  12. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  13. Characterization of the targeting signal in mitochondrial β-barrel proteins

    PubMed Central

    Jores, Tobias; Klinger, Anna; Groß, Lucia E.; Kawano, Shin; Flinner, Nadine; Duchardt-Ferner, Elke; Wöhnert, Jens; Kalbacher, Hubert; Endo, Toshiya; Schleiff, Enrico; Rapaport, Doron

    2016-01-01

    Mitochondrial β-barrel proteins are synthesized on cytosolic ribosomes and must be specifically targeted to the organelle before their integration into the mitochondrial outer membrane. The signal that assures such precise targeting and its recognition by the organelle remained obscure. In the present study we show that a specialized β-hairpin motif is this long searched for signal. We demonstrate that a synthetic β-hairpin peptide competes with the import of mitochondrial β-barrel proteins and that proteins harbouring a β-hairpin peptide fused to passenger domains are targeted to mitochondria. Furthermore, a β-hairpin motif from mitochondrial proteins targets chloroplast β-barrel proteins to mitochondria. The mitochondrial targeting depends on the hydrophobicity of the β-hairpin motif. Finally, this motif interacts with the mitochondrial import receptor Tom20. Collectively, we reveal that β-barrel proteins are targeted to mitochondria by a dedicated β-hairpin element, and this motif is recognized at the organelle surface by the outer membrane translocase. PMID:27345737

  14. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... cheese. The conveyor shall be constructed so that it will not contaminate the cheese and be...

  15. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 3 2011-01-01 2011-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... cheese. The conveyor shall be constructed so that it will not contaminate the cheese and be...

  16. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 3 2012-01-01 2012-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... cheese. The conveyor shall be constructed so that it will not contaminate the cheese and be...

  17. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 3 2014-01-01 2014-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... cheese. The conveyor shall be constructed so that it will not contaminate the cheese and be...

  18. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 3 2013-01-01 2013-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... cheese. The conveyor shall be constructed so that it will not contaminate the cheese and be...

  19. Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins.

    PubMed

    Yamashita, Daichi; Sugawara, Takaki; Takeshita, Miyu; Kaneko, Jun; Kamio, Yoshiyuki; Tanaka, Isao; Tanaka, Yoshikazu; Yao, Min

    2014-01-01

    Pathogenic bacteria secrete pore-forming toxins (PFTs) to attack target cells. PFTs are expressed as water-soluble monomeric proteins, which oligomerize into nonlytic prepore intermediates on the target cell membrane before forming membrane-spanning pores. Despite a wealth of biochemical data, the lack of high-resolution prepore structural information has hampered understanding of the β-barrel formation process. Here, we report crystal structures of staphylococcal γ-haemolysin and leucocidin prepores. The structures reveal a disordered bottom half of the β-barrel corresponding to the transmembrane region, and a rigid upper extramembrane half. Spectroscopic analysis of fluorescently labelled mutants confirmed that the prepore is distinct from the pore within the transmembrane region. Mutational analysis also indicates a pivotal role for the glycine residue located at the lipid-solvent interface as a 'joint' between the two halves of the β-barrel. These observations suggest a two-step transmembrane β-barrel pore formation mechanism in which the upper extramembrane and bottom transmembrane regions are formed independently. PMID:25263813

  20. Analysis of Fibular Single Graft and Fibular Double-barrel Graft for Mandibular Reconstruction

    PubMed Central

    Shimizu, Yusuke; Ihara, Jyun; Kishi, Kazuo

    2016-01-01

    Background: High-quality mandibular reconstruction using vascularized free fibular graft is necessary to provide an osseointegrated dental implant and fixed denture. An appropriate crown–implant ratio is needed, and a good match between bones is extremely important. There are no articles describing the analysis and evaluation of both the fibula and mandible in the same patients. Methods: Computed tomography images of both mandible and fibula of 80 patients were selected in a random manner. We measured bone height of the fibula and mandible at specified points and evaluated the difference of bone height between the fibula and mandible using fibular single or double-barrel grafts. Results: The percentage of patients who had a “good” result for a fibular single graft was only 13.8%. There was no significant difference in bone heights when analyzed by gender. Whether patients were dentulous or not had a large influence on the difference between fibular and mandibular bone heights. Most young patients, but only half of older patients, needed fibular double-barrel grafts. Overweight patients with a high body mass index more often needed fibular double-barrel grafts. Conclusions: For mandibular reconstruction using a fibular graft, preoperative analysis of the patient’s profile and proper use of a fibular single or double-barrel graft contribute to minimizing the difference between the height of the grafted fibula and native mandible and are keys to an ideal reconstruction with good cosmetics and function. PMID:27622091

  1. Effect of Associative Learning on Memory Spine Formation in Mouse Barrel Cortex

    PubMed Central

    Jasinska, Malgorzata; Siucinska, Ewa; Jasek, Ewa; Litwin, Jan A.; Pyza, Elzbieta; Kossut, Malgorzata

    2016-01-01

    Associative fear learning, in which stimulation of whiskers is paired with mild electric shock to the tail, modifies the barrel cortex, the functional representation of sensory receptors involved in the conditioning, by inducing formation of new inhibitory synapses on single-synapse spines of the cognate barrel hollows and thus producing double-synapse spines. In the barrel cortex of conditioned, pseudoconditioned, and untreated mice, we analyzed the number and morphological features of dendritic spines at various maturation and stability levels: sER-free spines, spines containing smooth endoplasmic reticulum (sER), and spines containing spine apparatus. Using stereological analysis of serial sections examined by transmission electron microscopy, we found that the density of double-synapse spines containing spine apparatus was significantly increased in the conditioned mice. Learning also induced enhancement of the postsynaptic density area of inhibitory synapses as well as increase in the number of polyribosomes in such spines. In single-synapse spines, the effects of conditioning were less pronounced and included increase in the number of polyribosomes in sER-free spines. The results suggest that fear learning differentially affects single- and double-synapse spines in the barrel cortex: it promotes maturation and stabilization of double-synapse spines, which might possibly contribute to permanent memory formation, and upregulates protein synthesis in single-synapse spines. PMID:26819780

  2. EVALUATION OF EMISSIONS FROM THE OPEN BURNING OF HOUSEHOLD WASTE IN BARRELS - VOLUME 1. TECHNICAL REPORT

    EPA Science Inventory

    The report gives results of a detailed emissions characterization study undertaken to examine, characterize, and quantify emissions from the simulated burning of household waste in barrels. The study evaluated two waste streams: that of an avid recycler, who removed most of the r...

  3. Twenty years of barrel-stave flextensional transducer technology in Canada

    NASA Astrophysics Data System (ADS)

    Jones, Dennis F.

    2005-04-01

    The barrel-stave flextensional transducer, a compact underwater sound source, was conceived at DRDC Atlantic in 1986 [G. W. McMahon and D. F. Jones, U.S. Patent No. 4,922,470 (1 May 1990); Canadian Patent No. 1,285,646 (2 July 1991)]. Over the years, five barrel-stave designs belonging to three flextensional classes were built and tested at DRDC Atlantic. Three Class I transducers with operating frequencies ranging from 800 to 1600 Hz were integrated into submarine communications buoys, low frequency active horizontal projector arrays, and a broadband sonar towbody. A high-power Class II and broadband (1-7 kHz) Class III transducer were deployed under the ice in the Lincoln Sea for research related to rapidly deployable surveillance systems. These barrel-stave flextensional transducers have also supported a variety of marine mammal studies including vocal mimicry in long-finned pilot whales, coda dialects in sperm whales, and the R&D of acoustic detection and tracking systems for endangered northern right whales. In August 2004 a barrel-stave transducer was used to lure a trapped juvenile humpback whale to the sluice gates of a tidal generating station on the Annapolis River in Nova Scotia by transmitting humpback whale calls underwater. The acoustic performance parameters for all 5 transducers will be presented.

  4. Assessment of Residential Rain Barrel Water Quality and Use in Cincinnati, Ohio

    EPA Science Inventory

    The collection, storage, and reuse of rainwater collected in rain barrels from urban rooftop areas assists municipalities in achieving stormwater management objectives and in some areas also serves as an adjunct resource for domestic water supplies. In this study, rainwater reuse...

  5. Computed tomography manifestation of a triple-barreled aortic dissection: the Mercedes-Benz mark sign.

    PubMed

    Shin, M S; Zorn, G L; Ho, K J

    1988-04-01

    Computed tomographic (CT) findings of a rare case of triple-barreled aortic dissection was described. CT demonstrated the extent of dissection, a communication between two channels, and three lumens separated by the intimal flap and a thin undetached tunica media, resembling a Mercedes-Benz mark.

  6. Evaluation of mRNA Localization Using Double Barrel Scanning Ion Conductance Microscopy.

    PubMed

    Nashimoto, Yuji; Takahashi, Yasufumi; Zhou, Yuanshu; Ito, Hidenori; Ida, Hiroki; Ino, Kosuke; Matsue, Tomokazu; Shiku, Hitoshi

    2016-07-26

    Information regarding spatial mRNA localization in single cells is necessary for a better understanding of cellular functions in tissues. Here, we report a method for evaluating localization of mRNA in single cells using double-barrel scanning ion conductance microscopy (SICM). Two barrels in a nanopipette were filled with aqueous and organic electrolyte solutions and used for SICM and as an electrochemical syringe, respectively. We confirmed that the organic phase barrel could be used to collect cytosol from living cells, which is a minute but sufficient amount to assess cellular status using qPCR analysis. The water phase barrel could be used for SICM to image topography with subcellular resolution, which could be used to determine positions for analyzing mRNA expression. This system was able to evaluate mRNA localization in single cells. After puncturing the cellular membrane in a minimally invasive manner, using SICM imaging as a guide, we collected a small amount cytosol from different positions within a single cell and showed that mRNA expression depends on cellular position. In this study, we show that SICM imaging can be utilized for the analysis of mRNA localization in single cells. In addition, we fully automated the pipet movement in the XYZ-directions during the puncturing processes, making it applicable as a high-throughput system for collecting cytosol and analyzing mRNA localization. PMID:27399804

  7. Npas4 Expression in Two Experimental Models of the Barrel Cortex Plasticity

    PubMed Central

    Kaliszewska, Aleksandra; Kossut, Malgorzata

    2015-01-01

    Npas4 has recently been identified as an important factor in brain plasticity, particularly in mechanisms of inhibitory control. Little is known about Npas4 expression in terms of cortical plasticity. In the present study expressions of Npas4 and the archetypal immediate early gene (IEG) c-Fos were investigated in the barrel cortex of mice after sensory deprivation (sparing one row of whiskers for 7 days) or sensory conditioning (pairing stimulation of one row of whiskers with aversive stimulus). Laser microdissection of individual barrel rows allowed for analysis of IEGs expression precisely in deprived and nondeprived barrels (in deprivation study) or stimulated and nonstimulated barrels (in conditioning study). Cortex activation by sensory conditioning was found to upregulate the expression of both Npas4 and c-Fos. Reorganization of cortical circuits triggered by removal of selected rows of whiskers strongly affected c-Fos but not Npas4 expression. We hypothesize that increased inhibitory synaptogenesis observed previously after conditioning may be mediated by Npas4 expression. PMID:25785202

  8. Barrel cortical neurons and astrocytes coordinately respond to an increased whisker stimulus frequency

    PubMed Central

    2012-01-01

    Background Nerve cells program the brain codes to manage well-organized cognitions and behaviors. It remains unclear how a population of neurons and astrocytes work coordinately to encode their spatial and temporal activity patterns in response to frequency and intensity signals from sensory inputs. Results With two-photon imaging and electrophysiology to record cellular functions in the barrel cortex in vivo, we analyzed the activity patterns of neurons and astrocytes in response to whisker stimuli with increasing frequency, an environmental stimulus pattern that rodents experience in the accelerated motion. Compared to the resting state, whisker stimulation caused barrel neurons and astrocytes to be activated more synchronously. An increased stimulus frequency up-regulated the activity strength of neurons and astrocytes as well as coordinated their interaction. The coordination among the barrel neurons and astrocytes was fulfilled by increasing their functional connections. Conclusions Our study reveals that the nerve cells in the barrel cortex encode frequency messages in whisker tactile inputs through setting their activity coordination. PMID:22537827

  9. From Constructs to Crystals - Towards Structure Determination of β-barrel Outer Membrane Proteins.

    PubMed

    Noinaj, Nicholas; Mayclin, Stephen; Stanley, Ann M; Jao, Christine C; Buchanan, Susan K

    2016-01-01

    Membrane proteins serve important functions in cells such as nutrient transport, motility, signaling, survival and virulence, yet constitute only ~1% percent of known structures. There are two types of membrane proteins, α-helical and β-barrel. While α-helical membrane proteins can be found in nearly all cellular membranes, β-barrel membrane proteins can only be found in the outer membranes of mitochondria, chloroplasts, and Gram-negative bacteria. One common bottleneck in structural studies of membrane proteins in general is getting enough pure sample for analysis. In hopes of assisting those interested in solving the structure of their favorite β-barrel outer membrane protein (OMP), general protocols are presented for the production of target β-barrel OMPs at levels useful for structure determination by either X-ray crystallography and/or NMR spectroscopy. Here, we outline construct design for both native expression and for expression into inclusion bodies, purification using an affinity tag, and crystallization using detergent screening, bicelle, and lipidic cubic phase techniques. These protocols have been tested and found to work for most OMPs from Gram-negative bacteria; however, there are some targets, particularly for mitochondria and chloroplasts that may require other methods for expression and purification. As such, the methods here should be applicable for most projects that involve OMPs from Gram-negative bacteria, yet the expression levels and amount of purified sample will vary depending on the target OMP. PMID:27404000

  10. Metal dust deposition in a shotgun wound associated with barrel modification.

    PubMed

    Williams, Andrew S; Bowes, Matthew J

    2016-03-01

    Contact-range gunshot wounds commonly demonstrate deposition of black soot in and around the wound. Deposition of other visible pigments originating from the firearm has not been specifically described. In the current case, an adult male was found dead adjacent to a shotgun fixed in a vice grip with a modified, shortened barrel. A handheld, powered, metal grinding wheel was nearby. Autopsy revealed an intraoral gunshot wound, including soot deposition in and around the mouth and within the wound track. In addition, there was a peculiar, gray, lustrous film on the lips, gingiva, and anterior teeth. The material was concentrated around the most severe areas of injury in the anterior mouth and easily rubbed off with a cotton swab. It was not visualized in the rest of the mouth and not present in the larynx, or the esophagus. Overall, our opinion is that this unique, gray, lustrous film represents deposition of fine metallic dust that accumulated in the barrel of the shotgun during its modification with the grinding wheel. This type of unique pigment deposition should be recognized by forensic pathologists as possibly being related to the discharge of a firearm with a recently modified barrel or other cause for fine metallic dust accumulation within the barrel. Depending on the circumstances of the case, collection of samples of such metal dust deposits could be indicated for subsequent analysis. PMID:26782960

  11. High speed machining of space shuttle external tank liquid hydrogen barrel panel

    NASA Technical Reports Server (NTRS)

    Hankins, J. D.

    1983-01-01

    Actual and projected optimum High Speed Machining data for producing shuttle external tank liquid hydrogen barrel panels of aluminum alloy 2219-T87 are reported. The data included various machining parameters; e.g., spindle speeds, cutting speed, table feed, chip load, metal removal rate, horsepower, cutting efficiency, cutter wear (lack of) and chip removal methods.

  12. VARIABLES AFFECTING EMISSIONS OF PCDDS/FS FROM UNCONTROLLED COMBUSTION OF HOUSEHOLD WASTE IN BARRELS

    EPA Science Inventory

    The uncontrolled burning of household waste in barrels has recently been implicated as a major source of airborne emissions of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDDs/Fs). Based on the need to generate a more accurate emission factor for burn ba...

  13. PARAMETERS INFLUENCING EMISSIONS OF PCDDS/FS FROM OPEN BURNING OF HOUSEHOLD WASTE IN BARRELS

    EPA Science Inventory

    The paper reports results from tests that were designed to examine some of the factors influencing the emissions of polychlorinated-p-dioxins and polychlorinated dibenzofurans (PCDDs/Fs) from burn barrels. Based on the wide variability of emissions within duplicate-run sets, in ...

  14. Demonstrating the effect of forensic firearm countermeasures: Bullet characteristics generated due to barrel modifications.

    PubMed

    O'Keeffe, C; Champion, S; Allsop, D

    2015-12-01

    Forensic awareness and the declining availability of firearms have resulted in an increase in the use of modified and re-activated firearms in crime. Although some modifications are undertaken to simply acquire a functioning firearm, others are perpetrated as a direct forensic countermeasure to prevent the association between a firearm and a crime. This article describes the effects of these modifications on bullet striation patterns imparted from the barrel to a fired bullet. The key results indicated that the investigated modifications display assessable characteristics. The use of an oversized barrel imparted striations consistent with firing with the absence of typical rifling. Subsequent or consecutively fired bullets possessed striation variations, with the first showing the least evidence of striations. The application of a choke resulted in more obvious bullet elongation compared to a smoothbore barrel. The restriction caused merging of lands and groves of the imparted rifling and obscured their usual definition. Effects of breech adaption were also characterised by observing the buckling and enlargement of the cartridge case. This deformity of the cartridge case was most evident when the barrel pressure increased due to the presence of the choke. From this study it was evident that unique characteristic impressions associated with different modifications most commonly found in criminal investigations can be utilised by a forensic expert and impart significant intelligence to an investigation. PMID:26282508

  15. Metal dust deposition in a shotgun wound associated with barrel modification.

    PubMed

    Williams, Andrew S; Bowes, Matthew J

    2016-03-01

    Contact-range gunshot wounds commonly demonstrate deposition of black soot in and around the wound. Deposition of other visible pigments originating from the firearm has not been specifically described. In the current case, an adult male was found dead adjacent to a shotgun fixed in a vice grip with a modified, shortened barrel. A handheld, powered, metal grinding wheel was nearby. Autopsy revealed an intraoral gunshot wound, including soot deposition in and around the mouth and within the wound track. In addition, there was a peculiar, gray, lustrous film on the lips, gingiva, and anterior teeth. The material was concentrated around the most severe areas of injury in the anterior mouth and easily rubbed off with a cotton swab. It was not visualized in the rest of the mouth and not present in the larynx, or the esophagus. Overall, our opinion is that this unique, gray, lustrous film represents deposition of fine metallic dust that accumulated in the barrel of the shotgun during its modification with the grinding wheel. This type of unique pigment deposition should be recognized by forensic pathologists as possibly being related to the discharge of a firearm with a recently modified barrel or other cause for fine metallic dust accumulation within the barrel. Depending on the circumstances of the case, collection of samples of such metal dust deposits could be indicated for subsequent analysis.

  16. Demonstrating the effect of forensic firearm countermeasures: Bullet characteristics generated due to barrel modifications.

    PubMed

    O'Keeffe, C; Champion, S; Allsop, D

    2015-12-01

    Forensic awareness and the declining availability of firearms have resulted in an increase in the use of modified and re-activated firearms in crime. Although some modifications are undertaken to simply acquire a functioning firearm, others are perpetrated as a direct forensic countermeasure to prevent the association between a firearm and a crime. This article describes the effects of these modifications on bullet striation patterns imparted from the barrel to a fired bullet. The key results indicated that the investigated modifications display assessable characteristics. The use of an oversized barrel imparted striations consistent with firing with the absence of typical rifling. Subsequent or consecutively fired bullets possessed striation variations, with the first showing the least evidence of striations. The application of a choke resulted in more obvious bullet elongation compared to a smoothbore barrel. The restriction caused merging of lands and groves of the imparted rifling and obscured their usual definition. Effects of breech adaption were also characterised by observing the buckling and enlargement of the cartridge case. This deformity of the cartridge case was most evident when the barrel pressure increased due to the presence of the choke. From this study it was evident that unique characteristic impressions associated with different modifications most commonly found in criminal investigations can be utilised by a forensic expert and impart significant intelligence to an investigation.

  17. Effects of Dimethyl Sulfoxide on Neuronal Response Characteristics in Deep Layers of Rat Barrel Cortex

    PubMed Central

    Soltani, Narjes; Mohammadi, Elham; Allahtavakoli, Mohammad; Shamsizadeh, Ali; Roohbakhsh, Ali; Haghparast, Abbas

    2016-01-01

    Introduction: Dimethyl sulfoxide (DMSO) is a chemical often used as a solvent for water-insoluble drugs. In this study, we evaluated the effect of intracerebroventricular (ICV) administration of DMSO on neural response characteristics (in 1200–1500 μm depth) of the rat barrel cortex. Methods: DMSO solution was prepared in 10% v/v concentration and injected into the lateral ventricle of rats. Neuronal spontaneous activity and neuronal responses to deflection of the principal whisker (PW) and adjacent whisker (AW) were recorded in barrel cortex. A condition test ratio (CTR) was used to measure inhibitory receptive fields in barrel cortex. Results: The results showed that both PW and AW evoked ON and OFF responses, neuronal spontaneous activity and inhibitory receptive fields did not change following ICV administration of DMSO. Conclusion: Results of this study suggest that acute ICV administration of 10% DMSO did not modulate the electrophysiological characteristics of neurons in the l deep ayers of rat barrel cortex. PMID:27563414

  18. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2011-04-01 2010-04-01 true Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  19. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2012-04-01 2010-04-01 true Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  20. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2013-04-01 2013-04-01 false Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  1. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2010-04-01 2010-04-01 false Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  2. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2014-04-01 2014-04-01 false Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  3. Predicting three-dimensional structures of transmembrane domains of β-barrel membrane proteins

    PubMed Central

    Naveed, Hammad; Xu, Yun; Jackups, Ronald; Liang, Jie

    2012-01-01

    β-barrel membrane proteins are found in the outer membrane of gram-negative bacteria, mitochondria, and chloroplasts. They are important for pore formation, membrane anchoring, enzyme activity, and are often responsible for bacterial virulence. Due to difficulties in experimental structure determination, they are sparsely represented in the protein structure databank. We have developed a computational method for predicting structures of the trans-membrane (TM) domains of β-barrel membrane proteins. Our method based on key organization principles, can predict structures of the TM domain of β-barrel membrane proteins of novel topology, including those from eukaryotic mitochondria. Our method is based on a model of physical interactions, a discrete conformational state-space, an empirical potential function, as well as a model to account for interstrand loop entropy. We are able to construct three dimensional atomic structure of the TM-domains from sequences for a set of 23 non-homologous proteins (resolution 1.8 – 3.0 Å). The median RMSD of TM-domains containing 75–222 residues between predicted and measured structures is 3.9 Å for main chain atoms. In addition, stability determinants and protein-protein interaction sites can be predicted. Such predictions on eukaryotic mitochondria outer membrane protein Tom40 and VDAC are confirmed by independent mutagenesis and chemical cross-linking studies. These results suggest that our model captures key components of the organization principles of β-barrel membrane protein assembly. PMID:22148174

  4. Learning-Dependent Plasticity of the Barrel Cortex Is Impaired by Restricting GABA-Ergic Transmission.

    PubMed

    Posluszny, Anna; Liguz-Lecznar, Monika; Turzynska, Danuta; Zakrzewska, Renata; Bielecki, Maksymilian; Kossut, Malgorzata

    2015-01-01

    Experience-induced plastic changes in the cerebral cortex are accompanied by alterations in excitatory and inhibitory transmission. Increased excitatory drive, necessary for plasticity, precedes the occurrence of plastic change, while decreased inhibitory signaling often facilitates plasticity. However, an increase of inhibitory interactions was noted in some instances of experience-dependent changes. We previously reported an increase in the number of inhibitory markers in the barrel cortex of mice after fear conditioning engaging vibrissae, observed concurrently with enlargement of the cortical representational area of the row of vibrissae receiving conditioned stimulus (CS). We also observed that an increase of GABA level accompanied the conditioning. Here, to find whether unaltered GABAergic signaling is necessary for learning-dependent rewiring in the murine barrel cortex, we locally decreased GABA production in the barrel cortex or reduced transmission through GABAA receptors (GABAARs) at the time of the conditioning. Injections of 3-mercaptopropionic acid (3-MPA), an inhibitor of glutamic acid decarboxylase (GAD), into the barrel cortex prevented learning-induced enlargement of the conditioned vibrissae representation. A similar effect was observed after injection of gabazine, an antagonist of GABAARs. At the behavioral level, consistent conditioned response (cessation of head movements in response to CS) was impaired. These results show that appropriate functioning of the GABAergic system is required for both manifestation of functional cortical representation plasticity and for the development of a conditioned response.

  5. Polyphenols in red wine aged in acacia (Robinia pseudoacacia) and oak (Quercus petraea) wood barrels.

    PubMed

    Sanz, Miriam; Fernández de Simón, Brígida; Esteruelas, Enrique; Muñoz, Angel Ma; Cadahía, Estrella; Hernández, Ma Teresa; Estrella, Isabel; Martinez, Juana

    2012-06-30

    Polyphenolic composition of two Syrah wines aged during 6 or 12 months in medium toasting acacia and oak 225L barrels was studied by LC-DAD-ESI/MS. A total of 43 nonanthocyanic phenolic compounds were found in all wines, and other 15 compounds only in the wines from acacia barrels. Thus, the nonanthocyanic phenolic profile could be a useful tool to identify the wines aged in acacia barrels. Among all of them the dihydrorobinetin highlights because of its high levels, but also robinetin, 2,4-dihydroxybenzaldehyde, a tetrahydroxydihydroflavonol, fustin, butin, a trihydroxymethoxydihydroflavonol and 2,4-dihydroxybenzoic acid were detected at appreciable levels in wines during aging in acacia barrels, and could be used as phenolic markers for authenticity purposes. Although longer contact time with acacia wood mean higher concentrations of phenolic markers found in wines, the identification of these wines will also be easy after short aging times due the high levels reached by these compounds, even after only 2 months of aging.

  6. Electrostatic design of the barrel CRID (Cherenkov Ring Imaging Detector) and associated measurements

    SciTech Connect

    Abe, K.; Hasegawa, K.; Suekane, F.; Yuta, H. . Dept. of Physics); Antilogus, P.; Aston, D.; Bienz, T.; Bird, F.; Dunwoodie, W.; Hallewell, G.; Kawahara, H.; Kwon, Y.; Leith, D.W.G.S.; Muller, D.; Nagamine, T.; Pavel, T.; Ratcliff, B.; Rensing, P.; Schultz, D.; Shapiro, S.; Simopoulos, C.; Solodov, E.; Toge, N.; Va'Vra, J. Williams, H. (Stanford Linear Accelerator Center, Menlo Park, CA (US

    1990-04-01

    We report on the electrostatic design and related measurements of the barrel Cherenkov Ring Imaging Detector for the Stanford Large Detector experiment at the Stanford Linear Accelerator Center Linear Collider. We include test results of photon feedback in TMAE-laden gas, distortion measurements in the drift boxes and corona measurements. 13 refs., 21 figs.

  7. Analysis of Fibular Single Graft and Fibular Double-barrel Graft for Mandibular Reconstruction

    PubMed Central

    Shimizu, Yusuke; Ihara, Jyun; Kishi, Kazuo

    2016-01-01

    Background: High-quality mandibular reconstruction using vascularized free fibular graft is necessary to provide an osseointegrated dental implant and fixed denture. An appropriate crown–implant ratio is needed, and a good match between bones is extremely important. There are no articles describing the analysis and evaluation of both the fibula and mandible in the same patients. Methods: Computed tomography images of both mandible and fibula of 80 patients were selected in a random manner. We measured bone height of the fibula and mandible at specified points and evaluated the difference of bone height between the fibula and mandible using fibular single or double-barrel grafts. Results: The percentage of patients who had a “good” result for a fibular single graft was only 13.8%. There was no significant difference in bone heights when analyzed by gender. Whether patients were dentulous or not had a large influence on the difference between fibular and mandibular bone heights. Most young patients, but only half of older patients, needed fibular double-barrel grafts. Overweight patients with a high body mass index more often needed fibular double-barrel grafts. Conclusions: For mandibular reconstruction using a fibular graft, preoperative analysis of the patient’s profile and proper use of a fibular single or double-barrel graft contribute to minimizing the difference between the height of the grafted fibula and native mandible and are keys to an ideal reconstruction with good cosmetics and function.

  8. A summary of the BARREL campaigns: Technique for studying electron precipitation

    NASA Astrophysics Data System (ADS)

    Woodger, L. A.; Halford, A. J.; Millan, R. M.; McCarthy, M. P.; Smith, D. M.; Bowers, G. S.; Sample, J. G.; Anderson, B. R.; Liang, X.

    2015-06-01

    The Balloon Array for Radiation belt Relativistic Electron Losses (BARREL) studies the loss of energetic electrons from Earth's radiation belts. BARREL's array of slowly drifting balloon payloads was designed to capitalize on magnetic conjunctions with NASA's Van Allen Probes. Two campaigns were conducted from Antarctica in 2013 and 2014. During the first campaign in January and February of 2013, there were three moderate geomagnetic storms with SYM-Hmin < -40 nT. Similarly, two minor geomagnetic storms occurred during the second campaign, starting in December of 2013 and continuing on into February of 2014. Throughout the two campaigns, BARREL observed electron precipitation over a wide range of energies and exhibiting temporal structure from hundreds of milliseconds to hours. Relativistic electron precipitation was observed in the dusk to midnight sector, and microburst precipitation was primarily observed near dawn. In this paper we review the two BARREL science campaigns and discuss the data products and analysis techniques as applied to relativistic electron precipitation observed on 19 January 2013.

  9. Characterization of the targeting signal in mitochondrial β-barrel proteins.

    PubMed

    Jores, Tobias; Klinger, Anna; Groß, Lucia E; Kawano, Shin; Flinner, Nadine; Duchardt-Ferner, Elke; Wöhnert, Jens; Kalbacher, Hubert; Endo, Toshiya; Schleiff, Enrico; Rapaport, Doron

    2016-01-01

    Mitochondrial β-barrel proteins are synthesized on cytosolic ribosomes and must be specifically targeted to the organelle before their integration into the mitochondrial outer membrane. The signal that assures such precise targeting and its recognition by the organelle remained obscure. In the present study we show that a specialized β-hairpin motif is this long searched for signal. We demonstrate that a synthetic β-hairpin peptide competes with the import of mitochondrial β-barrel proteins and that proteins harbouring a β-hairpin peptide fused to passenger domains are targeted to mitochondria. Furthermore, a β-hairpin motif from mitochondrial proteins targets chloroplast β-barrel proteins to mitochondria. The mitochondrial targeting depends on the hydrophobicity of the β-hairpin motif. Finally, this motif interacts with the mitochondrial import receptor Tom20. Collectively, we reveal that β-barrel proteins are targeted to mitochondria by a dedicated β-hairpin element, and this motif is recognized at the organelle surface by the outer membrane translocase. PMID:27345737

  10. EVALUATION OF EMISSIONS FROM THE OPEN BURNING OF HOUSEHOLD WASTES IN BARRELS - VOLUME 2. APPENDICES

    EPA Science Inventory

    The report gives results of a detailed emissions characterization study undertaken to examine, characterize, and quantify emissions from the simulated burning of household waste in barrels. The study evaluated two waste streams: that of an avid recycler, who removed most of the r...

  11. Superior long-term stability of a glucose biosensor based on inserted barrel plating gold electrodes.

    PubMed

    Hsu, Cheng-Teng; Hsiao, Hung-Chan; Fang, Mei-Yen; Zen, Jyh-Myng

    2009-10-15

    Disposable one shot usage blood glucose strips are routinely used in the diagnosis and management of diabetes mellitus and their performance can vary greatly. In this paper we critically evaluated the long-term stability of glucose strips made of barrel plating gold electrodes. Compared to other glucose biosensing platforms of vapor deposited palladium and screen printed carbon electrodes, the proposed glucose biosensor was found to show the best stability among the three biosensing platforms in thermal acceleration experiments at 40 degrees C for 6 months with an average bias of 3.4% at glucose concentrations of 5-20 mM. The precision test of this barrel plating gold glucose biosensor also showed the best performance (coefficients of variation in the range of 1.4-2.4%) in thermal acceleration experiments at 40 degrees C, 50 degrees C and 70 degrees C for 27 days. Error grid analysis revealed that all measurements fell in zone A and zone B. Regression analysis showed no significant difference between the proposed biosensor and the reference method at 99% confidence level. The amperometric glucose biosensor fabricated by inserting two barrel plating gold electrodes onto an injection-molding plastic base followed by immobilizing with a bio-reagent layer and membrane was very impressive with a long-term stability up to 2.5 years at 25 degrees C. Overall, these results indicated that the glucose oxidase/barrel plating gold biosensing platform is ideal for long-term accurate glycemic control.

  12. Supramolecular chains of high nuclearity {Mn(III)25} barrel-like single molecule magnets.

    PubMed

    Giannopoulos, Dimosthenis P; Thuijs, Annaliese; Wernsdorfer, Wolfgang; Pilkington, Melanie; Christou, George; Stamatatos, Theocharis C

    2014-01-25

    The first application of 1-methyl-1H-pyrrole-2-carbaldehyde oxime as a ligand for the coordination of paramagnetic transition metal ions has afforded a new {Mn(III)25} barrel-like cluster linked via Na(+) cations into a 1D polymeric topology that exhibits single-molecule magnetic behaviour.

  13. 77 FR 45490 - Safety Zone, Barrel Recovery, Lake Superior; Duluth, MN

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-01

    ... FR Federal Register NPRM Notice of Proposed Rulemaking A. Regulatory History and Information The... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone, Barrel Recovery, Lake Superior; Duluth, MN..., Duluth, MN. This safety zone is precautionary to protect recreational vessels and marine traffic from...

  14. 77 FR 37321 - Safety Zone, Barrel Recovery, Lake Superior; Duluth, MN

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-21

    ... FR Federal Register NPRM Notice of Proposed Rulemaking A. Regulatory History and Information The... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone, Barrel Recovery, Lake Superior; Duluth, MN..., Duluth, MN. This safety zone is precautionary to protect recreational vessels and marine traffic from...

  15. Computed tomography manifestation of a triple-barreled aortic dissection: the Mercedes-Benz mark sign.

    PubMed

    Shin, M S; Zorn, G L; Ho, K J

    1988-04-01

    Computed tomographic (CT) findings of a rare case of triple-barreled aortic dissection was described. CT demonstrated the extent of dissection, a communication between two channels, and three lumens separated by the intimal flap and a thin undetached tunica media, resembling a Mercedes-Benz mark. PMID:3168525

  16. Late emergence of the vibrissa direction selectivity map in the rat barrel cortex.

    PubMed

    Kremer, Yves; Léger, Jean-François; Goodman, Dan; Brette, Romain; Bourdieu, Laurent

    2011-07-20

    In the neocortex, neuronal selectivities for multiple sensorimotor modalities are often distributed in topographical maps thought to emerge during a restricted period in early postnatal development. Rodent barrel cortex contains a somatotopic map for vibrissa identity, but the existence of maps representing other tactile features has not been clearly demonstrated. We addressed the issue of the existence in the rat cortex of an intrabarrel map for vibrissa movement direction using in vivo two-photon imaging. We discovered that the emergence of a direction map in rat barrel cortex occurs long after all known critical periods in the somatosensory system. This map is remarkably specific, taking a pinwheel-like form centered near the barrel center and aligned to the barrel cortex somatotopy. We suggest that this map may arise from intracortical mechanisms and demonstrate by simulation that the combination of spike-timing-dependent plasticity at synapses between layer 4 and layer 2/3 and realistic pad stimulation is sufficient to produce such a map. Its late emergence long after other classical maps suggests that experience-dependent map formation and refinement continue throughout adult life.

  17. Volatile compounds and sensorial characterisation of red wine aged in cherry, chestnut, false acacia, ash and oak wood barrels.

    PubMed

    Fernández de Simón, B; Martínez, J; Sanz, M; Cadahía, E; Esteruelas, E; Muñoz, A M

    2014-03-15

    The wood-related volatile profile of wines aged in cherry, acacia, ash, chestnut and oak wood barrels was studied by GC-MS, and could be a useful tool to identify the wood specie used. Thus, 2,4-dihydroxybenzaldehyde in wines aged in acacia barrels, and ethyl-2-benzoate in cherry barrels could be used as chemical markers of these wood species, for authenticity purposes. Also, the quantitative differences obtained in the volatile profiles allow a good classification of all wines regarding wood species of barrels, during all aging time, and they contributed with different intensities to aromatic and gustative characteristics of aged wines. Wines aged in oak were the best valuated during all aging time, but the differences were not always significant. The lowest scores were assigned to wines aged in cherry barrels from 6 months of aging, so this wood could be more suitable in short aging times.

  18. Analysis Preservation in ATLAS

    NASA Astrophysics Data System (ADS)

    Cranmer, Kyle; Heinrich, Lukas; Jones, Roger; South, David M.

    2015-12-01

    Long before data taking, ATLAS established a policy that all analyses need to be preserved. In the initial data-taking period, this has been achieved by various tools and techniques. ATLAS is now reviewing the analysis preservation with the aim of bringing coherence and robustness to the process and with a clearer view of the level of reproducibility that is reasonably achievable. The secondary aim is to reduce the load on the analysts. Once complete, this will serve for our internal preservation needs but also provide a basis for any subsequent sharing of analysis results with external parties.

  19. The Herschel ATLAS

    NASA Technical Reports Server (NTRS)

    Eales, S.; Dunne, L.; Clements, D.; Cooray, A.; De Zotti, G.; Dye, S.; Ivison, R.; Jarvis, M.; Lagache, G.; Maddox, S.; Negrello, M.; Serjeant, S.; Thompson, M. A.; Van Kampen, E.; Amblard, A.; Andreani, P.; Baes, M.; Beelen, A.; Bendo, G. J.; Bertoldi, F.; Benford, D.; Bock, J.

    2010-01-01

    The Herschel ATLAS is the largest open-time key project that will be carried out on the Herschel Space Observatory. It will survey 570 sq deg of the extragalactic sky, 4 times larger than all the other Herschel extragalactic surveys combined, in five far-infrared and submillimeter bands. We describe the survey, the complementary multiwavelength data sets that will be combined with the Herschel data, and the six major science programs we are undertaking. Using new models based on a previous submillimeter survey of galaxies, we present predictions of the properties of the ATLAS sources in other wave bands.

  20. All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences

    PubMed Central

    Hayat, Sikander; Sander, Chris; Marks, Debora S.

    2015-01-01

    Transmembrane β-barrels (TMBs) carry out major functions in substrate transport and protein biogenesis but experimental determination of their 3D structure is challenging. Encouraged by successful de novo 3D structure prediction of globular and α-helical membrane proteins from sequence alignments alone, we developed an approach to predict the 3D structure of TMBs. The approach combines the maximum-entropy evolutionary coupling method for predicting residue contacts (EVfold) with a machine-learning approach (boctopus2) for predicting β-strands in the barrel. In a blinded test for 19 TMB proteins of known structure that have a sufficient number of diverse homologous sequences available, this combined method (EVfold_bb) predicts hydrogen-bonded residue pairs between adjacent β-strands at an accuracy of ∼70%. This accuracy is sufficient for the generation of all-atom 3D models. In the transmembrane barrel region, the average 3D structure accuracy [template-modeling (TM) score] of top-ranked models is 0.54 (ranging from 0.36 to 0.85), with a higher (44%) number of residue pairs in correct strand–strand registration than in earlier methods (18%). Although the nonbarrel regions are predicted less accurately overall, the evolutionary couplings identify some highly constrained loop residues and, for FecA protein, the barrel including the structure of a plug domain can be accurately modeled (TM score = 0.68). Lower prediction accuracy tends to be associated with insufficient sequence information and we therefore expect increasing numbers of β-barrel families to become accessible to accurate 3D structure prediction as the number of available sequences increases. PMID:25858953

  1. Big Sky Carbon Atlas

    DOE Data Explorer

    The Big Sky Carbon Atlas is an online geoportal designed for you to discover, interpret, and access geospatial data and maps relevant to decision support and education on carbon sequestration in the Big Sky Region. In serving as the public face of the Partnership's spatial Data Libraries, the Atlas provides a gateway to geographic information characterizing CO2 sources, potential geologic sinks, terrestrial carbon fluxes, civil and energy infrastructure, energy use, and related themes. In addition to directly serving the BSCSP and its stakeholders, the Atlas feeds regional data to the NatCarb Portal, contributing to a national perspective on carbon sequestration. Established components of the Atlas include a gallery of thematic maps and an interactive map that allows you to: • Navigate and explore regional characterization data through a user-friendly interface • Print your map views or publish them as PDFs • Identify technical references relevant to specific areas of interest • Calculate straight-line or pipeline-constrained distances from point sources of CO2 to potential geologic sink features • Download regional data layers (feature under development) (Acknowledgment to the Big Sky Carbon Sequestration Partnership (BSCSP); see home page at http://www.bigskyco2.org/)

  2. An Icelandic wind atlas

    NASA Astrophysics Data System (ADS)

    Nawri, Nikolai; Nína Petersen, Gudrun; Bjornsson, Halldór; Arason, Þórður; Jónasson, Kristján

    2013-04-01

    While Iceland has ample wind, its use for energy production has been limited. Electricity in Iceland is generated from renewable hydro- and geothermal source and adding wind energy has not be considered practical or even necessary. However, adding wind into the energy mix is becoming a more viable options as opportunities for new hydro or geothermal power installation become limited. In order to obtain an estimate of the wind energy potential of Iceland a wind atlas has been developed as a part of the Nordic project "Improved Forecast of Wind, Waves and Icing" (IceWind). The atlas is based on mesoscale model runs produced with the Weather Research and Forecasting (WRF) Model and high-resolution regional analyses obtained through the Wind Atlas Analysis and Application Program (WAsP). The wind atlas shows that the wind energy potential is considerable. The regions with the strongest average wind are nevertheless impractical for wind farms, due to distance from road infrastructure and power grid as well as harsh winter climate. However, even in easily accessible regions wind energy potential in Iceland, as measured by annual average power density, is among the highest in Western Europe. There is a strong seasonal cycle, with wintertime power densities throughout the island being at least a factor of two higher than during summer. Calculations show that a modest wind farm of ten medium size turbines would produce more energy throughout the year than a small hydro power plants making wind energy a viable additional option.

  3. Atlas of NATO.

    ERIC Educational Resources Information Center

    Young, Harry F.

    This atlas provides basic information about the North Atlantic Treaty Organization (NATO). Formed in response to growing concern for the security of Western Europe after World War II, NATO is a vehicle for Western efforts to reduce East-West tensions and the level of armaments. NATO promotes political and economic collaboration as well as military…

  4. A Supercomplex Spanning the Inner and Outer Membranes Mediates the Biogenesis of β-Barrel Outer Membrane Proteins in Bacteria.

    PubMed

    Wang, Yan; Wang, Rui; Jin, Feng; Liu, Yang; Yu, Jiayu; Fu, Xinmiao; Chang, Zengyi

    2016-08-01

    β-barrel outer membrane proteins (OMPs) are ubiquitously present in Gram-negative bacteria, mitochondria and chloroplasts, and function in a variety of biological processes. The mechanism by which the hydrophobic nascent β-barrel OMPs are transported through the hydrophilic periplasmic space in bacterial cells remains elusive. Here, mainly via unnatural amino acid-mediated in vivo photo-crosslinking studies, we revealed that the primary periplasmic chaperone SurA interacts with nascent β-barrel OMPs largely via its N-domain but with β-barrel assembly machine protein BamA mainly via its satellite P2 domain, and that the nascent β-barrel OMPs interact with SurA via their N- and C-terminal regions. Additionally, via dual in vivo photo-crosslinking, we demonstrated the formation of a ternary complex involving β-barrel OMP, SurA, and BamA in cells. More importantly, we found that a supercomplex spanning the inner and outer membranes and involving the BamA, BamB, SurA, PpiD, SecY, SecE, and SecA proteins appears to exist in living cells, as revealed by a combined analyses of sucrose-gradient ultra-centrifugation, Blue native PAGE and mass spectrometry. We propose that this supercomplex integrates the translocation, transportation, and membrane insertion events for β-barrel OMP biogenesis.

  5. A Supercomplex Spanning the Inner and Outer Membranes Mediates the Biogenesis of β-Barrel Outer Membrane Proteins in Bacteria.

    PubMed

    Wang, Yan; Wang, Rui; Jin, Feng; Liu, Yang; Yu, Jiayu; Fu, Xinmiao; Chang, Zengyi

    2016-08-01

    β-barrel outer membrane proteins (OMPs) are ubiquitously present in Gram-negative bacteria, mitochondria and chloroplasts, and function in a variety of biological processes. The mechanism by which the hydrophobic nascent β-barrel OMPs are transported through the hydrophilic periplasmic space in bacterial cells remains elusive. Here, mainly via unnatural amino acid-mediated in vivo photo-crosslinking studies, we revealed that the primary periplasmic chaperone SurA interacts with nascent β-barrel OMPs largely via its N-domain but with β-barrel assembly machine protein BamA mainly via its satellite P2 domain, and that the nascent β-barrel OMPs interact with SurA via their N- and C-terminal regions. Additionally, via dual in vivo photo-crosslinking, we demonstrated the formation of a ternary complex involving β-barrel OMP, SurA, and BamA in cells. More importantly, we found that a supercomplex spanning the inner and outer membranes and involving the BamA, BamB, SurA, PpiD, SecY, SecE, and SecA proteins appears to exist in living cells, as revealed by a combined analyses of sucrose-gradient ultra-centrifugation, Blue native PAGE and mass spectrometry. We propose that this supercomplex integrates the translocation, transportation, and membrane insertion events for β-barrel OMP biogenesis. PMID:27298319

  6. Consumer demand for green stormwater management technology in an urban setting: The case of Chicago rain barrels

    NASA Astrophysics Data System (ADS)

    Ando, Amy W.; Freitas, Luiz P. C.

    2011-12-01

    Hydrological disruption and water pollution from urbanization can be reduced if households in urban areas adopt decentralized storm water controls. We study a citywide municipal subsidized rain-barrel program in the third biggest city in the United States, Chicago, to explore what factors influence whether households purchase this sort of green storm water management technology in an urban setting. Specifically, we regress census-tract level data on the number of rain barrels adopted in different parts of the city on socioeconomic variables, data on local flood frequency, and features of the housing stock. We find that rain-barrel purchases are not correlated with local levels of flooding, even though city residents were told by program managers that rain barrels could alleviate local flooding. Instead, rain barrels are heavily concentrated in places with high-income attitudinally green populations. We do find more rain barrels were adopted in places close to rain-barrel distribution points and near sites of hydrological information campaigns; thus, policy makers might increase green-technology adoption in areas where they can do the most good by reducing transaction costs and providing education programs to those areas. Finally, our results indicate that owner occupancy is positively correlated with green-technology adoption. Low-rise rental housing may have inefficiently low levels of adoption, such that city managers might want to develop programs to encourage storm water management investments by landlords who do not live in their own properties.

  7. Cobalamin-Independent Methionine Synthase (MetE): A Face-to-Face Double Barrel that Evolved by Gene Duplication

    SciTech Connect

    Pejcha, Robert; Ludwig, Martha L.

    2010-03-08

    Cobalamin-independent methionine synthase (MetE) catalyzes the transfer of a methyl group from methyltetrahydrofolate to L-homocysteine (Hcy) without using an intermediate methyl carrier. Although MetE displays no detectable sequence homology with cobalamin-dependent methionine synthase (MetH), both enzymes require zinc for activation and binding of Hcy. Crystallographic analyses of MetE from T. maritima reveal an unusual dual-barrel structure in which the active site lies between the tops of the two ({beta}{alpha}){sub 8} barrels. The fold of the N-terminal barrel confirms that it has evolved from the C-terminal polypeptide by gene duplication; comparisons of the barrels provide an intriguing example of homologous domain evolution in which binding sites are obliterated. The C-terminal barrel incorporates the zinc ion that binds and activates Hcy. The zinc-binding site in MetE is distinguished from the (Cys){sub 3}Zn site in the related enzymes, MetH and betaine-homocysteine methyltransferase, by its position in the barrel and by the metal ligands, which are histidine, cysteine, glutamate, and cysteine in the resting form of MetE. Hcy associates at the face of the metal opposite glutamate, which moves away from the zinc in the binary E {center_dot} Hcy complex. The folate substrate is not intimately associated with the N-terminal barrel; instead, elements from both barrels contribute binding determinants in a binary complex in which the folate substrate is incorrectly oriented for methyl transfer. Atypical locations of the Hcy and folate sites in the C-terminal barrel presumably permit direct interaction of the substrates in a ternary complex. Structures of the binary substrate complexes imply that rearrangement of folate, perhaps accompanied by domain rearrangement, must occur before formation of a ternary complex that is competent for methyl transfer.

  8. Fatal gunshot injury caused by an unusual projectile--a barrel-cleaning brush as a tandem bullet.

    PubMed

    Ellis, P S

    1997-06-01

    The case of a man who committed suicide by shooting himself in the head is reported. The rifle used by the decedent had been cleaned with the use of a barrel-cleaning brush, which had become detached and had been retained in the barrel. The brush together with the usual projectile were propelled into the head. A highly unusual radiograph was obtained. The implantation of a barrel-cleaning brush in the skull has not been reported in the English literature. This case is reported because of its unique nature and because of possible misinterpretation of an unusual radiological appearance. The potential dangers of inadequate care during weapon cleaning are also discussed.

  9. 76 FR 52672 - Agency Information Collection Activities: Submission for OMB Review; Comment Request, Level 1...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-23

    ... Review; Comment Request, Level 1 Assessment and Level 3 Evaluations for the Center for Domestic...@dhs.gov . SUPPLEMENTARY INFORMATION: Collection of Information Title: Level 1 Assessment and Level 3... collection. OMB Number: OMB No. 1660-NEW. Form Titles and Numbers: FEMA Form 092-0-2, Level 1 Assessment...

  10. a Barrel Ifr Instrumented with Limited Streamer Tubes for Babar Experiment

    NASA Astrophysics Data System (ADS)

    Cibinetto, Gianluigi

    The new barrel Instrumented Flux Return (IFR) of BABAR detector will be reported here. Limited Stramer Tubes (LSTs) have been chosen to replace the existing RPCs as active elements of the barrel IFR. The layout of the new detector will be discussed: in particular, a cell bigger than the standard one has been used to improve efficiency and reliability. The extruded profile is coated with a resistive layer of graphite having a typical surface resistivity between 0.2 and 0.4 MOhm/square. The tubes are assembled in modules and installed in 12 active layers of each sextant of the IFR detector. R&D studies which have been done to choose the final design will be discussed, as well as the Quality Control procedure adopted during the tube production to assure high performances of the detector.

  11. a Barrel Ifr Instrumented with Limited Streamer Tubes for Babar Experiment

    NASA Astrophysics Data System (ADS)

    Andreotti, Mirco

    2006-04-01

    The new barrel Instrumented Flux Return (IFR) of BABAR detector will be reported here. Limited Streamer Tubes (LSTs) have been chosen to replace the existing RPCs as active elements of the barrel IFR. The layout of the new detector will be discussed: in particular, a cell bigger than the standard one has been used to improve efficiency and reliability. The extruded profile is coated with a resistive layer of graphite having a typical surface resistivity between 0.2 and 0.4 MOhm/square. The tubes are assembled in modules and installed in 12 active layers of each sextant of the IFR detector. R&D studies to choose the final design and Quality Control procedure adopted during the tube production will be briefly discussed. Finally the performances of installed LSTs into 2/3 of IFR after 8 months of operations will be reported.

  12. A Barrel IFR Instrumented With Limited Streamer Tubes for BABAR Experiment

    SciTech Connect

    Andreotti, M.; /Ferrara U. /INFN, Ferrara

    2006-11-15

    The new barrel Instrumented Flux Return (IFR) of BABAR detector will be reported here. Limited Streamer Tubes (LSTs) have been chosen to replace the existing RPCs as active elements of the barrel IFR. The layout of the new detector will be discussed: in particular, a cell bigger than the standard one has been used to improve efficiency and reliability. The extruded profile is coated with a resistive layer of graphite having a typical surface resistivity between 0.2 and 0.4 MOhm/square. The tubes are assembled in modules and installed in 12 active layers of each sextant of the IFR detector. R&D studies to choose the final design and Quality Control procedure adopted during the tube production will be briefly discussed. Finally the performances of installed LSTs into 2/3 of IFR after 8 months of operations will be reported.

  13. Influence of Flow Swirling and Exit Shape of Barrel Nozzle on Cold Spraying

    NASA Astrophysics Data System (ADS)

    Klinkov, S. V.; Kosarev, V. F.; Zaikovskii, V. N.

    2011-06-01

    Traditionally, in cold spray two-phase supersonic jet formed with the help of converging-diverging nozzle are used. In this study an alternative design of cold spray nozzle is proposed in which a high velocity two-phase flow is created using an intense flow swirling in a constant section barrel (cylinder) with double-edged bevel exit. As a result, a high velocity gas-powder mixture jet is produced presenting a fan-shaped jet spreading at a large angle in one plane and approximately of equal size along the normal to this plane. This results in greater angles of particle deposition and, hence, in larger deposition widths, with the maximum width of deposition spot reaching 25 barrel diameters. The performed experimental study proves the new nozzle design to be appropriate for deposition of cold-sprayed coatings.

  14. Site geotechnical considerations for expansion of the Strategic Petroleum Reserve (SPR) to one billion barrels

    SciTech Connect

    Neal, J.T. ); Whittington, D.W. ); Magorian, T.R. , Amherst, NY )

    1991-01-01

    Eight Gulf Coast salt domes have emerged as candidate sites for possible expansion of the Strategic Petroleum Reserve (SPR) to one billion barrels. Two existing SPR sites, Big Hill, TX, and Weeks Island, LA, are among the eight that are being considered. To achieve the billion barrel capacity, some 25 new leached caverns would be constructed, and would probably be established in two separate sites in Louisiana and Texas because of distribution requirements. Geotechnical factors involved in siting studies have centered first and foremost on cavern integrity and environmental acceptability, once logistical suitability is realized. Other factors have involved subsidence and flooding potential, loss of coastal marshlands, seismicity, brine injection well utility, and co-use by multiple operators. 5 refs., 11 figs., 2 tabs.

  15. Improving atlas methodology

    USGS Publications Warehouse

    Robbins, C.S.; Dowell, B.A.; O'Brien, J.

    1987-01-01

    We are studying a sample of Maryland (2 %) and New Hampshire (4 %) Atlas blocks and a small sample in Maine. These three States used different sampling methods and block sizes. We compare sampling techniques, roadside with off-road coverage, our coverage with that of the volunteers, and different methods of quantifying Atlas results. The 7 1/2' (12-km) blocks used in the Maine Atlas are satisfactory for coarse mapping, but are too large to enable changes to be detected in the future. Most states are subdividing the standard 7 1/2' maps into six 5-km blocks. The random 1/6 sample of 5-km blocks used in New Hampshire, Vermont (published 1985), and many other states has the advantage of permitting detection of some changes in the future, but the disadvantage of leaving important habitats unsampled. The Maryland system of atlasing all 1,200 5-km blocks and covering one out of each six by quarterblocks (2 1/2-km) is far superior if enough observers can be found. A good compromise, not yet attempted, would be to Atlas a 1/6 random sample of 5-km blocks and also one other carefully selected (non-random) block on the same 7 1/2' map--the block that would include the best sample of habitats or elevations not in the random block. In our sample the second block raised the percentage of birds found from 86% of the birds recorded in the 7 1/2' quadrangle to 93%. It was helpful to list the expected species in each block and to revise this list annually. We estimate that 90-100 species could be found with intensive effort in most Maryland blocks; perhaps 95-105 in New Hampshire. It was also helpful to know which species were under-sampled so we could make a special effort to search for these. A total of 75 species per block (or 75% of the expected species in blocks with very restricted habitat diversity) is considered a practical and adequate goal in these States. When fewer than 60 species are found per block, a high proportion of the rarer species are missed, as well as some of

  16. Reversibility and two state behaviour in the thermal unfolding of oligomeric TIM barrel proteins.

    PubMed

    Romero-Romero, Sergio; Costas, Miguel; Rodríguez-Romero, Adela; Alejandro Fernández-Velasco, D

    2015-08-28

    Temperature is one of the main variables that modulate protein function and stability. Thermodynamic studies of oligomeric proteins, the dominant protein natural form, have been often hampered because irreversible aggregation and/or slow reactions are common. There are no reports on the reversible equilibrium thermal unfolding of proteins composed of (β/α)8 barrel subunits, albeit this "TIM barrel" topology is one of the most abundant and versatile in nature. We studied the eponymous TIM barrel, triosephosphate isomerase (TIM), belonging to five species of different bacterial taxa. All of them were found to be catalytically efficient dimers. The three-dimensional structure of four enzymes was solved at high/medium resolution. Irreversibility and kinetic control were observed in the thermal unfolding of two TIMs, while for the other three the thermal unfolding was found to follow a two-state equilibrium reversible process. Shifts in the global stability curves of these three proteins are related to the organismal temperature range of optimal growth and modulated by variations in maximum stability temperature and in the enthalpy change at that temperature. Reversibility appears to correlate with the low isoelectric point, the absence of a residual structure in the unfolded state, small cavity volume in the native state, low conformational stability and a low melting temperature. Furthermore, the strong coupling between dimer dissociation and monomer unfolding may reduce aggregation and favour reversibility. It is therefore very thought-provoking to find that a common topological ensemble, such as the TIM barrel, can unfold/refold in the Anfinsen way, i.e. without the help of the cellular machinery. PMID:26206330

  17. Cofilin1 Controls Transcolumnar Plasticity in Dendritic Spines in Adult Barrel Cortex

    PubMed Central

    Tsubota, Tadashi; Okubo-Suzuki, Reiko; Ohashi, Yohei; Tamura, Keita; Ogata, Koshin; Yaguchi, Masae; Matsuyama, Makoto; Inokuchi, Kaoru; Miyashita, Yasushi

    2015-01-01

    During sensory deprivation, the barrel cortex undergoes expansion of a functional column representing spared inputs (spared column), into the neighboring deprived columns (representing deprived inputs) which are in turn shrunk. As a result, the neurons in a deprived column simultaneously increase and decrease their responses to spared and deprived inputs, respectively. Previous studies revealed that dendritic spines are remodeled during this barrel map plasticity. Because cofilin1, a predominant regulator of actin filament turnover, governs both the expansion and shrinkage of the dendritic spine structure in vitro, it hypothetically regulates both responses in barrel map plasticity. However, this hypothesis remains untested. Using lentiviral vectors, we knocked down cofilin1 locally within layer 2/3 neurons in a deprived column. Cofilin1-knocked-down neurons were optogenetically labeled using channelrhodopsin-2, and electrophysiological recordings were targeted to these knocked-down neurons. We showed that cofilin1 knockdown impaired response increases to spared inputs but preserved response decreases to deprived inputs, indicating that cofilin1 dependency is dissociated in these two types of barrel map plasticity. To explore the structural basis of this dissociation, we then analyzed spine densities on deprived column dendritic branches, which were supposed to receive dense horizontal transcolumnar projections from the spared column. We found that spine number increased in a cofilin1-dependent manner selectively in the distal part of the supragranular layer, where most of the transcolumnar projections existed. Our findings suggest that cofilin1-mediated actin dynamics regulate functional map plasticity in an input-specific manner through the dendritic spine remodeling that occurs in the horizontal transcolumnar circuits. These new mechanistic insights into transcolumnar plasticity in adult rats may have a general significance for understanding reorganization of

  18. Altered somatosensory barrel cortex refinement in the developing brain of Mecp2-null mice.

    PubMed

    Moroto, M; Nishimura, A; Morimoto, M; Isoda, K; Morita, T; Yoshida, M; Morioka, S; Tozawa, T; Hasegawa, T; Chiyonobu, T; Yoshimoto, K; Hosoi, H

    2013-11-01

    Rett syndrome (RTT) is a neurodevelopmental disorder caused by mutations in the methyl-CpG binding protein 2 (MeCP2) gene. In previous studies, monoaminergic dysfunctions have been detected in patients with RTT and in a murine model of RTT, the Mecp2-null mouse. Therefore, the pathogenesis of RTT is thought to involve impairments in the monoaminergic systems. However, there have been limited data showing that the impairment of monoamines leads to early symptoms during development. We used histochemistry to study the somatosensory barrel cortex in the B6.129P2(C)-Mecp2(tm1.1Bird) mouse model of RTT. The barrel cortex is widely used to investigate neuronal development and its regulation by various neurotransmitters including 5-HT. 5-HT levels were measured by high performance liquid chromatography with electrochemical detection (HPLC/EC), and serotonin transporter (SERT) and 5-HT1B receptor mRNAs were measured in the somatosensory cortex, thalamus and striatum on postnatal days (P) 10, P20 and P40. Mecp2-null mice (Mecp2-/y) had significantly smaller barrel fields than age-matched wild-type controls (Mecp2+/y) on P10 and P40, but the topographic map was accurately formed. Levels of 5-HT, and SERT and 5-HT1B receptor mRNA expression in the somatosensory cortex did not differ significantly between the Mecp2-null and wild-type mice on P10. However, thalamic 5-HT was reduced in Mecp2-null mice. Our data indicate that a lack of MeCP2 may disturb the refinement of the barrel cortex in the early postnatal period. Our findings suggest that a decrease in thalamic 5-HT might be involved in this phenomenon.

  19. A 30degree 'barrel shot' taken at track level showing operator's ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    A 30-degree 'barrel shot' taken at track level showing operator's house in center of swing span and the track with timber ties. The ties are transverse (90-degree) to the track with each end resting on the bottom chord of the steel swing span truss, thus providing their support with live loads being transferred to the swing span truss bridge. - Bridgeport Swing Span Bridge, Spanning Tennessee River, Bridgeport, Jackson County, AL

  20. Test of the wire ageing induced by radiation for the CMS barrel muon chambers

    NASA Astrophysics Data System (ADS)

    Conti, E.; Gasparini, F.

    2001-06-01

    We have carried out laboratory tests to measure the ageing of a wire tube due to pollutants outgassed by various materials. The tested materials are those used in the barrel muon drift tubes of the CMS experiment at LHC. An X-ray gun irradiated the test tube to accelerate the ageing process. No ageing effect has been measured for a period equivalent to 10 years of operation at LHC.

  1. BARREL observations of a solar energetic electron and solar energetic proton event

    NASA Astrophysics Data System (ADS)

    Halford, A. J.; McGregor, S. L.; Hudson, M. K.; Millan, R. M.; Kress, B. T.

    2016-05-01

    During the second Balloon Array for Radiation Belt Relativistic Electron Losses (BARREL) campaign two solar energetic proton (SEP) events were observed. Although BARREL was designed to observe X-rays created during electron precipitation events, it is sensitive to X-rays from other sources. The gamma lines produced when energetic protons hit the upper atmosphere are used in this paper to study SEP events. During the second SEP event starting on 7 January 2014 and lasting ˜3 days, which also had a solar energetic electron (SEE) event occurring simultaneously, BARREL had six payloads afloat spanning all magnetic local time (MLT) sectors and L values. Three payloads were in a tight array (˜2 h in MLT and ˜2 ΔL) inside the inner magnetosphere and at times conjugate in both L and MLT with the Van Allen Probes (approximately once per day). The other three payloads mapped to higher L values with one payload on open field lines for the entire event, while the other two appear to be crossing from open to closed field lines. Using the observations of the SEE and SEP events, we are able to map the open-closed boundary. Halford et al. (2015) demonstrated how BARREL can monitor electron precipitation following an interplanetary shock created by a coronal mass ejection (ICME-shock) arrival at Earth, while in this study we look at the SEP event precursor to the arrival of the ICME-Shock in our cradle-to-grave view: from flare, to SEE and SEP events, to radiation belt electron precipitation.

  2. Particle contamination from Martin Optical Black. [in design of barrel baffle of Infrared Astronomical Satellite

    NASA Technical Reports Server (NTRS)

    Young, P. J.; Noll, R.; Andreozzi, L.; Hope, J.

    1981-01-01

    The design of the barrel baffle of the Infrared Astronomical Satellite (IRAS) Optical Subsystem to minimize production of particulate contamination is described. The configuration of the 50-inch long, 28.5-inch diameter baffle required pop-rivet assembly after coating with Martin Optical Black for stray light suppression. An experiment to determine the contamination produced at assembly led to the modification of the baffle construction to preclude such damage to the coated surfaces.

  3. Performance study of the CMS barrel resistive plate chambers with cosmic rays

    NASA Astrophysics Data System (ADS)

    CMS Collaboration

    2010-03-01

    In October and November 2008, the CMS collaboration conducted a programme of cosmic ray data taking, which has recorded about 270 million events. The Resistive Plate Chamber system, which is part of the CMS muon detection system, was successfully operated in the full barrel. More than 98% of the channels were operational during the exercise with typical detection efficiency of 90%. In this paper, the performance of the detector during these dedicated runs is reported.

  4. Plasticity-Related Gene 1 Affects Mouse Barrel Cortex Function via Strengthening of Glutamatergic Thalamocortical Transmission.

    PubMed

    Unichenko, Petr; Kirischuk, Sergei; Yang, Jenq-Wei; Baumgart, Jan; Roskoden, Thomas; Schneider, Patrick; Sommer, Angela; Horta, Guilherme; Radyushkin, Konstantin; Nitsch, Robert; Vogt, Johannes; Luhmann, Heiko J

    2016-07-01

    Plasticity-related gene-1 (PRG-1) is a brain-specific protein that modulates glutamatergic synaptic transmission. Here we investigated the functional role of PRG-1 in adolescent and adult mouse barrel cortex both in vitro and in vivo. Compared with wild-type (WT) animals, PRG-1-deficient (KO) mice showed specific behavioral deficits in tests assessing sensorimotor integration and whisker-based sensory discrimination as shown in the beam balance/walking test and sandpaper tactile discrimination test, respectively. At P25-31, spontaneous network activity in the barrel cortex in vivo was higher in KO mice compared with WT littermates, but not at P16-19. At P16-19, sensory evoked cortical responses in vivo elicited by single whisker stimulation were comparable in KO and WT mice. In contrast, at P25-31 evoked responses were smaller in amplitude and longer in duration in WT animals, whereas KO mice revealed no such developmental changes. In thalamocortical slices from KO mice, spontaneous activity was increased already at P16-19, and glutamatergic thalamocortical inputs to Layer 4 spiny stellate neurons were potentiated. We conclude that genetic ablation of PRG-1 modulates already at P16-19 spontaneous and evoked excitability of the barrel cortex, including enhancement of thalamocortical glutamatergic inputs to Layer 4, which distorts sensory processing in adulthood.

  5. A Novel Bonding Method of Pure Aluminum and SUS304 Stainless Steel Using Barrel Nitriding

    NASA Astrophysics Data System (ADS)

    Kong, Jung Hyun; Okumiya, Masahiro; Tsunekawa, Yoshiki; Yun, Ky Youl; Kim, Sang Gweon; Yoshida, Masashi

    2014-09-01

    A great deal of research is being carried out on welding or bonding methods between iron and aluminum. However, it is not so easy to make Fe-Al bonding materials with both high strength and light weight. Recently, a new nitriding process has been proposed to produce aluminum nitride on an aluminum surface using a barrel. This study proposes a new concept in the production of a multilayer which has an AlN and Fe-Al intermetallic compound layer between the aluminum and steel using a barrel nitriding process. The bonding process was carried out from 893 K to 913 K (620 °C to 640 °C) for 18, 25.2, and 36 ks with Al2O3 powder and Al-Mg alloy powder. After the process, an aluminum nitride (AlN) layer and a Fe-Al intermetallic compound (Fe2Al5.4) layer were formed at the interface between the pure aluminum and SUS304 austenitic stainless steel. The thicknesses of the AlN layer and the intermetallic compound layer increased with increasing treatment temperature and time. The maximum hardnesses of the AlN layer and Fe2Al5.4 layers were found to be 377HV and 910HV, respectively, after barrel nitriding at 893 K (620 °C) for 18 ks.

  6. Orofacial Neuropathic Pain Leads to a Hyporesponsive Barrel Cortex with Enhanced Structural Synaptic Plasticity

    PubMed Central

    Thibault, Karine; Rivière, Sébastien; Lenkei, Zsolt

    2016-01-01

    Chronic pain is a long-lasting debilitating condition that is particularly difficult to treat due to the lack of identified underlying mechanisms. Although several key contributing processes have been described at the level of the spinal cord, very few studies have investigated the supraspinal mechanisms underlying chronic pain. Using a combination of approaches (cortical intrinsic imaging, immunohistochemical and behavioural analysis), our study aimed to decipher the nature of functional and structural changes in a mouse model of orofacial neuropathic pain, focusing on cortical areas involved in various pain components. Our results show that chronic neuropathic orofacial pain is associated with decreased haemodynamic responsiveness to whisker stimulation in the barrel field cortex. This reduced functional activation is likely due to the increased basal neuronal activity (measured indirectly using cFos and phospho-ERK immunoreactivity) observed in several cortical areas, including the contralateral barrel field, motor and cingulate cortices. In the same animals, immunohistochemical analysis of markers for active pre- or postsynaptic elements (Piccolo and phospho-Cofilin, respectively) revealed an increased immunofluorescence in deep cortical layers of the contralateral barrel field, motor and cingulate cortices. These results suggest that long-lasting orofacial neuropathic pain is associated with exacerbated neuronal activity and synaptic plasticity at the cortical level. PMID:27548330

  7. Similarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.

    PubMed

    Tiwari, Sandhya P; Reuter, Nathalie

    2016-03-01

    The conservation of the intrinsic dynamics of proteins emerges as we attempt to understand the relationship between sequence, structure and functional conservation. We characterise the conservation of such dynamics in a case where the structure is conserved but function differs greatly. The triosephosphate isomerase barrel fold (TBF), renowned for its 8 β-strand-α-helix repeats that close to form a barrel, is one of the most diverse and abundant folds found in known protein structures. Proteins with this fold have diverse enzymatic functions spanning five of six Enzyme Commission classes, and we have picked five different superfamily candidates for our analysis using elastic network models. We find that the overall shape is a large determinant in the similarity of the intrinsic dynamics, regardless of function. In particular, the β-barrel core is highly rigid, while the α-helices that flank the β-strands have greater relative mobility, allowing for the many possibilities for placement of catalytic residues. We find that these elements correlate with each other via the loops that link them, as opposed to being directly correlated. We are also able to analyse the types of motions encoded by the normal mode vectors of the α-helices. We suggest that the global conservation of the intrinsic dynamics in the TBF contributes greatly to its success as an enzymatic scaffold both through evolution and enzyme design.

  8. The stability of cylindrin β-barrel amyloid oligomer models-a molecular dynamics study.

    PubMed

    Berhanu, Workalemahu M; Hansmann, Ulrich H E

    2013-09-01

    Small-soluble amyloid oligomers are believed to play a significant role in the pathology of amyloid diseases. Recently, the atomic structure of a toxic oligomer formed by an 11 residue and its tandem repeat was found to have an out-off register antiparallel β-strands in the shape of a β-barrel. In the present article we investigate the effect of mutations in the hydrophobic cores on the structure and dynamic of the β-barrels using all atom multiple molecular dynamics simulations with an explicit solvent. Extending previous experiments with molecular dynamics simulations we systematically test how stability and formation of cylindrin depends on the interplay between hydrophobicity and steric effects of the core residues. We find that strong hydrophobic interactions between geometrically fitting residues keep the strands (both in register and out-off-register interface) in close proximity, which in turn stabilizes the side-chain and main-chain hydrogen bonds, and the salt bridges on the outer surface along the weak out-of-register interface. Our simulations also indicate presence of water molecules in the hydrophobic interior of the cylindrin β-barrel.Proteins 2013.

  9. Folding of β-barrel membrane proteins in lipid bilayers - Unassisted and assisted folding and insertion.

    PubMed

    Kleinschmidt, Jörg H

    2015-09-01

    In cells, β-barrel membrane proteins are transported in unfolded form to an outer membrane into which they fold and insert. Model systems have been established to investigate the mechanisms of insertion and folding of these versatile proteins into detergent micelles, lipid bilayers and even synthetic amphipathic polymers. In these experiments, insertion into lipid membranes is initiated from unfolded forms that do not display residual β-sheet secondary structure. These studies therefore have allowed the investigation of membrane protein folding and insertion in great detail. Folding of β-barrel membrane proteins into lipid bilayers has been monitored from unfolded forms by dilution of chaotropic denaturants that keep the protein unfolded as well as from unfolded forms present in complexes with molecular chaperones from cells. This review is aimed to provide an overview of the principles and mechanisms observed for the folding of β-barrel transmembrane proteins into lipid bilayers, the importance of lipid-protein interactions and the function of molecular chaperones and folding assistants. This article is part of a Special Issue entitled: Lipid-protein interactions.

  10. Regulation of cpg15 expression during single whisker experience in the barrel cortex of adult mice.

    PubMed

    Harwell, Corey; Burbach, Barry; Svoboda, Karel; Nedivi, Elly

    2005-10-01

    Regulation of gene transcription by neuronal activity is thought to be key to the translation of sensory experience into long-term changes in synaptic structure and function. Here we show that cpg15, a gene encoding an extracellular signaling molecule that promotes dendritic and axonal growth and synaptic maturation, is regulated in the somatosensory cortex by sensory experience capable of inducing cortical plasticity. Using in situ hybridization, we monitored cpg15 expression in 4-week-old mouse barrel cortex after trimming all whiskers except D1. We found that cpg15 expression is depressed in the deprived barrels and enhanced in the barrel column corresponding to the spared D1 whisker. Changes in cpg15 mRNA levels first appear in layer IV, peak 12 h after deprivation, and then decline rapidly. In layers II/III, changes in cpg15 expression appear later, peak at 24 h, and persist for days. Induction of cpg15 expression is significantly diminished in adolescent as well as adult CREB knockout mice. cpg15's spatio-temporal expression pattern and its regulation by CREB are consistent with a role in experience-dependent plasticity of cortical circuits. Our results suggest that local structural and/or synaptic changes may be a mechanism by which the adult cortex can adapt to peripheral manipulations. PMID:16010668

  11. Plasticity-Related Gene 1 Affects Mouse Barrel Cortex Function via Strengthening of Glutamatergic Thalamocortical Transmission

    PubMed Central

    Unichenko, Petr; Kirischuk, Sergei; Yang, Jenq-Wei; Baumgart, Jan; Roskoden, Thomas; Schneider, Patrick; Sommer, Angela; Horta, Guilherme; Radyushkin, Konstantin; Nitsch, Robert; Vogt, Johannes; Luhmann, Heiko J.

    2016-01-01

    Plasticity-related gene-1 (PRG-1) is a brain-specific protein that modulates glutamatergic synaptic transmission. Here we investigated the functional role of PRG-1 in adolescent and adult mouse barrel cortex both in vitro and in vivo. Compared with wild-type (WT) animals, PRG-1-deficient (KO) mice showed specific behavioral deficits in tests assessing sensorimotor integration and whisker-based sensory discrimination as shown in the beam balance/walking test and sandpaper tactile discrimination test, respectively. At P25-31, spontaneous network activity in the barrel cortex in vivo was higher in KO mice compared with WT littermates, but not at P16-19. At P16-19, sensory evoked cortical responses in vivo elicited by single whisker stimulation were comparable in KO and WT mice. In contrast, at P25-31 evoked responses were smaller in amplitude and longer in duration in WT animals, whereas KO mice revealed no such developmental changes. In thalamocortical slices from KO mice, spontaneous activity was increased already at P16-19, and glutamatergic thalamocortical inputs to Layer 4 spiny stellate neurons were potentiated. We conclude that genetic ablation of PRG-1 modulates already at P16-19 spontaneous and evoked excitability of the barrel cortex, including enhancement of thalamocortical glutamatergic inputs to Layer 4, which distorts sensory processing in adulthood. PMID:26980613

  12. Destiny of a drop on a fiber: from barrel to clamshell and back

    NASA Astrophysics Data System (ADS)

    Eral, Burak; de Ruiter, J.; de Ruiter, R.; Oh, J. M.; Semprebon, C.; Brinkman, M.; Mugele, F.

    2011-11-01

    Drops on cylindrical fibers are a familiar sight, for instance in the form of dew drops on spider webs. They can exist in two competing morphologies, a cylindrically symmetric barrel state completely engulfing the fiber and an asymmetric clamshell state, in which the drop sits on the side of the fiber. Despite their omnipresence and their practical relevance the physical mechanisms governing the stability of the two morphologies remained elusive. Using electrowetting-functionalized fibers we determined of the stability limits of both morphologies as a function of the two relevant control parameters, the contact angle and the liquid volume. While clamshells are found to prevail for large contact angles and small volumes, and barrels prevail for small angles and large volumes, there is also a wide range of intermediate parameter values, for which both morphologies are mechanically stable. Mapping out the energy landscape of the system by numerical minimization of the free energy we find that the barrel state is easily deformed by non-axisymmetric perturbations. From a general perspective, the demonstration of electrowetting-based reversible switching of liquid morphologies on fibers opens up opportunities for designing functional textiles and porous materials. We thank the Chemical Sciences division of the Netherlands Organization for Scientific Research (NWO-CW) for financial support.

  13. A novel Mitosomal β-barrel Outer Membrane Protein in Entamoeba.

    PubMed

    Santos, Herbert J; Imai, Kenichiro; Makiuchi, Takashi; Tomii, Kentaro; Horton, Paul; Nozawa, Akira; Ibrahim, Mohamed; Tozawa, Yuzuru; Nozaki, Tomoyoshi

    2015-02-25

    Entamoeba possesses a highly divergent mitochondrion-related organelle known as the mitosome. Here, we report the discovery of a novel protein in Entamoeba, which we name Mitosomal β-barrel Outer Membrane Protein of 30 kDa (MBOMP30). Initially identified through in silico analysis, we experimentally confirmed that MBOMP30 is indeed a β-barrel protein. Circular dichroism analysis showed MBOMP30 has a predominant β-sheet structure. Localization to Entamoeba histolytica mitosomes was observed through Percoll-gradient fractionation and immunofluorescence assay. Mitosomal membrane integration was demonstrated by carbonate fractionation, proteinase K digestion, and immunoelectron microscopy. Interestingly, the deletion of the putative β-signal, a sequence believed to guide β-barrel outer membrane protein (BOMP) assembly, did not affect membrane integration, but abolished the formation of a ~240 kDa complex. MBOMP30 represents only the seventh subclass of eukaryotic BOMPs discovered to date and lacks detectable homologs outside Entamoeba, suggesting that it may be unique to Entamoeba mitosomes.

  14. Improving the Resistance of a Eukaryotic β-Barrel Protein to Thermal and Chemical Perturbation

    PubMed Central

    Gessmann, Dennis; Mager, Frauke; Naveed, Hammad; Arnold, Thomas; Weirich, Sara; Linke, Dirk; Liang, Jie; Nussberger, Stephan

    2013-01-01

    Beta-barrel membrane proteins have regular structures with extensive hydrogen bonding networks between their transmembrane (TM) β-strands, which stabilize their protein fold. Nevertheless, weakly stable TM regions exist, which are important for the protein function and interaction with other proteins. Here, we report on the apparent stability of human Tom40A, a member of the ‘mitochondrial porin family’ and main constituent of the mitochondrial protein-conducting channel TOM. Using a physical interaction model TmSIP for β-barrel membrane proteins, we have identified three β-strands unfavorable in the TM domain of the protein. Substitution of key residues inside these strands with hydrophobic amino acids results in a decreased sensitivity of the protein to chemical and/or thermal denaturation. The apparent melting temperature observed when denatured at a rate of one degree per minute, is shifted from 73 to 84 °C. Moreover, the sensitivity of the protein to denaturant agents is significantly lowered. Further, we find a reduced tendency for the mutated protein to form dimers. We propose that the identified weakly stable β-strands 1, 2 and 9 of human Tom40A play an important role in quaternary protein-protein interactions within the mammalian TOM machinery. Our results show that the use of empirical energy functions to model the apparent stability of β-barrel membrane proteins may be a useful tool in the field of nanopore bioengineering. PMID:21835183

  15. Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations.

    PubMed

    Gessmann, Dennis; Mager, Frauke; Naveed, Hammad; Arnold, Thomas; Weirich, Sara; Linke, Dirk; Liang, Jie; Nussberger, Stephan

    2011-10-14

    β-Barrel membrane proteins have regular structures with extensive hydrogen-bond networks between their transmembrane (TM) β-strands, which stabilize their protein fold. Nevertheless, weakly stable TM regions, which are important for the protein function and interaction with other proteins, exist. Here, we report on the apparent stability of human Tom40A, a member of the "mitochondrial porin family" and main constituent of the mitochondrial protein-conducting channel TOM (translocase of the outer membrane). Using a physical interaction model, TmSIP, for β-barrel membrane proteins, we have identified three unfavorable β-strands in the TM domain of the protein. Substitution of key residues inside these strands with hydrophobic amino acids results in a decreased sensitivity of the protein to chemical and/or thermal denaturation. The apparent melting temperature observed when denatured at a rate of 1 °C per minute is shifted from 73 to 84 °C. Moreover, the sensitivity of the protein to denaturant agents is significantly lowered. Further, we find a reduced tendency for the mutated protein to form dimers. We propose that the identified weakly stable β-strands 1, 2 and 9 of human Tom40A play an important role in quaternary protein-protein interactions within the mammalian TOM machinery. Our results show that the use of empirical energy functions to model the apparent stability of β-barrel membrane proteins may be a useful tool in the field of nanopore bioengineering.

  16. Three-shell-based lens barrel for the effective athermalization of an IR optical system.

    PubMed

    Yang, Ho-Soon; Kihm, Hagyong; Moon, Il Kweon; Jung, Gil-Jae; Choi, Se-Chol; Lee, Kyung-Joo; Hwang, Hong-Yeon; Kim, Sug-Whan; Lee, Yun-Woo

    2011-11-20

    We have developed a new IR optical system that consists of three mirrors and four lenses, and that operates in the temperature range 8°C-32°C. This temperature range can induce thermoelastic deformation in the lenses and their mounting subassembly, leading to a large defocus error associated with the displacement of the lenses inside the barrel. We suggest using a new three-shell-based athermalization structure composed of two materials with different coefficients of thermal expansion (Invar and aluminum). A finite element analysis and the experiment data were used to confirm that this new athermalization barrel had a defocus error sensitivity of 11.6 nm/°C; this is an improvement on the widely used conventional single-shell titanium barrel model, which has a defocus error sensitivity of 29.8 nm/°C. This paper provides the technical details of the new athermalization design, and its computational and experimental performance results. PMID:22108878

  17. Lateral opening in the intact β-barrel assembly machinery captured by cryo-EM

    PubMed Central

    Iadanza, Matthew G.; Higgins, Anna J.; Schiffrin, Bob; Calabrese, Antonio N.; Brockwell, David J.; Ashcroft, Alison E.; Radford, Sheena E.; Ranson, Neil A.

    2016-01-01

    The β-barrel assembly machinery (BAM) is a ∼203 kDa complex of five proteins (BamA–E), which is essential for viability in E. coli. BAM promotes the folding and insertion of β-barrel proteins into the outer membrane via a poorly understood mechanism. Several current models suggest that BAM functions through a ‘lateral gating' motion of the β-barrel of BamA. Here we present a cryo-EM structure of the BamABCDE complex, at 4.9 Å resolution. The structure is in a laterally open conformation showing that gating is independent of BamB binding. We describe conformational changes throughout the complex and interactions between BamA, B, D and E, and the detergent micelle that suggest communication between BAM and the lipid bilayer. Finally, using an enhanced reconstitution protocol and functional assays, we show that for the outer membrane protein OmpT, efficient folding in vitro requires lateral gating in BAM. PMID:27686148

  18. Plasticity-Related Gene 1 Affects Mouse Barrel Cortex Function via Strengthening of Glutamatergic Thalamocortical Transmission.

    PubMed

    Unichenko, Petr; Kirischuk, Sergei; Yang, Jenq-Wei; Baumgart, Jan; Roskoden, Thomas; Schneider, Patrick; Sommer, Angela; Horta, Guilherme; Radyushkin, Konstantin; Nitsch, Robert; Vogt, Johannes; Luhmann, Heiko J

    2016-07-01

    Plasticity-related gene-1 (PRG-1) is a brain-specific protein that modulates glutamatergic synaptic transmission. Here we investigated the functional role of PRG-1 in adolescent and adult mouse barrel cortex both in vitro and in vivo. Compared with wild-type (WT) animals, PRG-1-deficient (KO) mice showed specific behavioral deficits in tests assessing sensorimotor integration and whisker-based sensory discrimination as shown in the beam balance/walking test and sandpaper tactile discrimination test, respectively. At P25-31, spontaneous network activity in the barrel cortex in vivo was higher in KO mice compared with WT littermates, but not at P16-19. At P16-19, sensory evoked cortical responses in vivo elicited by single whisker stimulation were comparable in KO and WT mice. In contrast, at P25-31 evoked responses were smaller in amplitude and longer in duration in WT animals, whereas KO mice revealed no such developmental changes. In thalamocortical slices from KO mice, spontaneous activity was increased already at P16-19, and glutamatergic thalamocortical inputs to Layer 4 spiny stellate neurons were potentiated. We conclude that genetic ablation of PRG-1 modulates already at P16-19 spontaneous and evoked excitability of the barrel cortex, including enhancement of thalamocortical glutamatergic inputs to Layer 4, which distorts sensory processing in adulthood. PMID:26980613

  19. Orofacial Neuropathic Pain Leads to a Hyporesponsive Barrel Cortex with Enhanced Structural Synaptic Plasticity.

    PubMed

    Thibault, Karine; Rivière, Sébastien; Lenkei, Zsolt; Férézou, Isabelle; Pezet, Sophie

    2016-01-01

    Chronic pain is a long-lasting debilitating condition that is particularly difficult to treat due to the lack of identified underlying mechanisms. Although several key contributing processes have been described at the level of the spinal cord, very few studies have investigated the supraspinal mechanisms underlying chronic pain. Using a combination of approaches (cortical intrinsic imaging, immunohistochemical and behavioural analysis), our study aimed to decipher the nature of functional and structural changes in a mouse model of orofacial neuropathic pain, focusing on cortical areas involved in various pain components. Our results show that chronic neuropathic orofacial pain is associated with decreased haemodynamic responsiveness to whisker stimulation in the barrel field cortex. This reduced functional activation is likely due to the increased basal neuronal activity (measured indirectly using cFos and phospho-ERK immunoreactivity) observed in several cortical areas, including the contralateral barrel field, motor and cingulate cortices. In the same animals, immunohistochemical analysis of markers for active pre- or postsynaptic elements (Piccolo and phospho-Cofilin, respectively) revealed an increased immunofluorescence in deep cortical layers of the contralateral barrel field, motor and cingulate cortices. These results suggest that long-lasting orofacial neuropathic pain is associated with exacerbated neuronal activity and synaptic plasticity at the cortical level. PMID:27548330

  20. Mercury-Atlas Test Launch

    NASA Technical Reports Server (NTRS)

    1961-01-01

    A NASA Project Mercury spacecraft was test launched at 11:15 AM EST on April 25, 1961 from Cape Canaveral, Florida, in a test designed to qualify the Mercury Spacecraft and all systems, which must function during orbit and reentry from orbit. The Mercury-Atlas vehicle was destroyed by Range Safety Officer about 40 seconds after liftoff. The spacecraft was recovered and appeared to be in good condition. Atlas was designed to launch payloads into low Earth orbit, geosynchronous transfer orbit or geosynchronous orbit. NASA first launched Atlas as a space launch vehicle in 1958. Project SCORE, the first communications satellite that transmitted President Eisenhower's pre-recorded Christmas speech around the world, was launched on an Atlas. For all three robotic lunar exploration programs, Atlas was used. Atlas/ Centaur vehicles launched both Mariner and Pioneer planetary probes. The current operational Atlas II family has a 100% mission success rating. For more information about Atlas, please see Chapter 2 in Roger Launius and Dennis Jenkins' book To Reach the High Frontier published by The University Press of Kentucky in 2002.

  1. Assessment Atlas, 1982-83.

    ERIC Educational Resources Information Center

    Yosemite Community Coll. District, Modesto, CA.

    Designed to provide information of value in establishing a base for decisionmaking in the Yosemite Community College District (YCCD), this assessment atlas graphically presents statistical data on the District as a whole, its two campuses, and YCCD Central Services for 1982-83. After an introduction to the use of the assessment atlas and…

  2. Assessment Atlas, 1983-84.

    ERIC Educational Resources Information Center

    Yosemite Community Coll. District, Modesto, CA.

    Designed to provide information of value in establishing a base for decision making in the Yosemite Community College District (YCCD), this assessment atlas graphically presents statistical data for the District as a whole, its two campuses, and YCCD Central Services for 1983-84. After an introduction to the use of the assessment atlas and…

  3. Brain templates and atlases.

    PubMed

    Evans, Alan C; Janke, Andrew L; Collins, D Louis; Baillet, Sylvain

    2012-08-15

    The core concept within the field of brain mapping is the use of a standardized, or "stereotaxic", 3D coordinate frame for data analysis and reporting of findings from neuroimaging experiments. This simple construct allows brain researchers to combine data from many subjects such that group-averaged signals, be they structural or functional, can be detected above the background noise that would swamp subtle signals from any single subject. Where the signal is robust enough to be detected in individuals, it allows for the exploration of inter-individual variance in the location of that signal. From a larger perspective, it provides a powerful medium for comparison and/or combination of brain mapping findings from different imaging modalities and laboratories around the world. Finally, it provides a framework for the creation of large-scale neuroimaging databases or "atlases" that capture the population mean and variance in anatomical or physiological metrics as a function of age or disease. However, while the above benefits are not in question at first order, there are a number of conceptual and practical challenges that introduce second-order incompatibilities among experimental data. Stereotaxic mapping requires two basic components: (i) the specification of the 3D stereotaxic coordinate space, and (ii) a mapping function that transforms a 3D brain image from "native" space, i.e. the coordinate frame of the scanner at data acquisition, to that stereotaxic space. The first component is usually expressed by the choice of a representative 3D MR image that serves as target "template" or atlas. The native image is re-sampled from native to stereotaxic space under the mapping function that may have few or many degrees of freedom, depending upon the experimental design. The optimal choice of atlas template and mapping function depend upon considerations of age, gender, hemispheric asymmetry, anatomical correspondence, spatial normalization methodology and disease

  4. Brain templates and atlases.

    PubMed

    Evans, Alan C; Janke, Andrew L; Collins, D Louis; Baillet, Sylvain

    2012-08-15

    The core concept within the field of brain mapping is the use of a standardized, or "stereotaxic", 3D coordinate frame for data analysis and reporting of findings from neuroimaging experiments. This simple construct allows brain researchers to combine data from many subjects such that group-averaged signals, be they structural or functional, can be detected above the background noise that would swamp subtle signals from any single subject. Where the signal is robust enough to be detected in individuals, it allows for the exploration of inter-individual variance in the location of that signal. From a larger perspective, it provides a powerful medium for comparison and/or combination of brain mapping findings from different imaging modalities and laboratories around the world. Finally, it provides a framework for the creation of large-scale neuroimaging databases or "atlases" that capture the population mean and variance in anatomical or physiological metrics as a function of age or disease. However, while the above benefits are not in question at first order, there are a number of conceptual and practical challenges that introduce second-order incompatibilities among experimental data. Stereotaxic mapping requires two basic components: (i) the specification of the 3D stereotaxic coordinate space, and (ii) a mapping function that transforms a 3D brain image from "native" space, i.e. the coordinate frame of the scanner at data acquisition, to that stereotaxic space. The first component is usually expressed by the choice of a representative 3D MR image that serves as target "template" or atlas. The native image is re-sampled from native to stereotaxic space under the mapping function that may have few or many degrees of freedom, depending upon the experimental design. The optimal choice of atlas template and mapping function depend upon considerations of age, gender, hemispheric asymmetry, anatomical correspondence, spatial normalization methodology and disease

  5. Betaalpha-hairpin clamps brace betaalphabeta modules and can make substantive contributions to the stability of TIM barrel proteins.

    PubMed

    Yang, Xiaoyan; Kathuria, Sagar V; Vadrevu, Ramakrishna; Matthews, C Robert

    2009-01-01

    Non-local hydrogen bonding interactions between main chain amide hydrogen atoms and polar side chain acceptors that bracket consecutive betaalpha or alphabeta elements of secondary structure in alphaTS from E. coli, a TIM barrel protein, have previously been found to contribute 4-6 kcal mol(-1) to the stability of the native conformation. Experimental analysis of similar betaalpha-hairpin clamps in a homologous pair of TIM barrel proteins of low sequence identity, IGPS from S. solfataricus and E. coli, reveals that this dramatic enhancement of stability is not unique to alphaTS. A survey of 71 TIM barrel proteins demonstrates a 4-fold symmetry for the placement of betaalpha-hairpin clamps, bracing the fundamental betaalphabeta building block and defining its register in the (betaalpha)(8) motif. The preferred sequences and locations of betaalpha-hairpin clamps will enhance structure prediction algorithms and provide a strategy for engineering stability in TIM barrel proteins.

  6. EMISSIONS OF POLYCHLORINATED DIBENZO-P-DIOXINS AND POLYCHLORINATED DIBENZOFURANS FROM THE OPEN BURNING OF HOUSEHOLD WASTE IN BARRELS

    EPA Science Inventory

    Backyard burning of household waste in barrels is a common waste disposal practice for which pollutant emissions have not been well characterized. This study measured the emissions of several pollutants, including polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofura...

  7. Neurotransmitter Release at the Thalamocortical Synapse Instructs Barrel Formation But Not Axon Patterning in the Somatosensory Cortex

    PubMed Central

    Narboux-Nême, Nicolas; Evrard, Alexis; Ferezou, Isabelle; Erzurumlu, Reha S.; Kaeser, Pascal S.; Lainé, Jeanne; Rossier, Jean; Ropert, Nicole; Südhof, Thomas C.; Gaspar, Patricia

    2012-01-01

    To assess the impact of synaptic neurotransmitter release on neural circuit development, we analyzed barrel cortex formation after thalamic or cortical ablation of RIM1 and RIM2 proteins, which control synaptic vesicle fusion. Thalamus-specific deletion of RIMs reduced neurotransmission efficacy by 67%. A barrelless phenotype was found with a dissociation of effects on the presynaptic and postsynaptic cellular elements of the barrel. Presynaptically, thalamocortical axons formed a normal whisker map, whereas postsynaptically the cytoarchitecture of layer IV neurons was altered as spiny stellate neurons were evenly distributed and their dendritic trees were symmetric. Strikingly, cortex-specific deletion of the RIM genes did not modify barrel development. Adult mice with thalamic-specific RIM deletion showed a lack of activity-triggered immediate early gene expression and altered sensory-related behaviors. Thus, efficient synaptic release is required at thalamocortical but not at corticocortical synapses for building the whisker to barrel map and for efficient sensory function. PMID:22553025

  8. ATLAS-1 Logo

    NASA Technical Reports Server (NTRS)

    1990-01-01

    The primary payload for the Space Shuttle mission STS-45, launched March 24, 1992, was the Atmospheric Laboratory for Applications and Science-1 (ATLAS-1)which was mounted on nondeployable Spacelab pallets in the orbiter cargo bay. Eight countries, th U.S., France, Germany, Belgium, United Kingdom, Switzerland, The Netherlands, and Japan, provided 12 instruments designed to perform 14 investigations in four fields. Atmospheric science instruments/investigations: Atmospheric Lyman-Alpha Emissions (ALAE); Atmospheric Trace Molecule Spectroscopy (ATMOS); Grille Spectrometer (GRILLE); Imaging Spectrometric Observatory (ISO); Millimeter-Wave Atmospheric Sounder (MAS). Solar Science: Active Cavity Radiometer Irradiance Monitor (ACRIM); Measurement of the Solar Constant (SOLCON); Solar Spectrum from 180 to 3,200 Nanometers (SOLSPEC); Solar Ultraviolet Spectral Irradiance Monitor (SUSIM). Space Plasma Physics: Atmospheric Emissions Photometric Imaging (AEPI); Space Experiments with Particle Accelerators (SEPAC). Ultraviolet astronomy: Far Ultraviolet Space Telescope (FAUST). This is the logo or emblem that was designed to represent the ATLAS-1 payload.

  9. Shifts in Developmental Timing, and Not Increased Levels of Experience-Dependent Neuronal Activity, Promote Barrel Expansion in the Primary Somatosensory Cortex of Rats Enucleated at Birth

    PubMed Central

    Fetter-Pruneda, Ingrid; Ibarrarán-Viniegra, Ana Sofía; Martínez-Martínez, Eduardo; Sandoval-Velasco, Marcela; Uribe-Figueroa, Laura; Padilla-Cortés, Patricia; Mercado-Célis, Gabriela; Gutiérrez-Ospina, Gabriel

    2013-01-01

    Birth-enucleated rodents display enlarged representations of whiskers (i.e., barrels of the posteromedial subfield) in the primary somatosensory cortex. Although the historical view maintains that barrel expansion is due to incremental increases in neuronal activity along the trigeminal pathway during postnatal development, recent evidence obtained in experimental models of intramodal plasticity challenges this view. Here, we re-evaluate the role of experience-dependent neuronal activity on barrel expansion in birth-enucleated rats by combining various anatomical methods and sensory deprivation paradigms. We show that barrels in birth-enucleated rats were already enlarged by the end of the first week of life and had levels of metabolic activity comparable to those in control rats at different ages. Dewhiskering after the postnatal period of barrel formation did not prevent barrel expansion in adult, birth-enucleated rats. Further, dark rearing and enucleation after barrel formation did not lead to expanded barrels in adult brains. Because incremental increases of somatosensory experience did not promote barrel expansion in birth-enucleated rats, we explored whether shifts of the developmental timing could better explain barrel expansion during the first week of life. Accordingly, birth-enucleated rats show earlier formation of barrels, accelerated growth of somatosensory thalamocortical afferents, and an earlier H4 deacetylation. Interestingly, when H4 deacetylation was prevented with a histone deacetylases inhibitor (valproic acid), barrel specification timing returned to normal and barrel expansion did not occur. Thus, we provide evidence supporting that shifts in developmental timing modulated through epigenetic mechanisms, and not increased levels of experience dependent neuronal activity, promote barrel expansion in the primary somatosensory cortex of rats enucleated at birth. PMID:23372796

  10. Chandra Galaxy Atlas

    NASA Astrophysics Data System (ADS)

    Kim, Dong-Woo; Anderson, Craig; Burke, Doug; Fabbiano, Giuseppina; Fruscione, Antonella; Lauer, Jennifer L.; McCollough, Michael L.; Morgan, Doug; Mossman, Amy; O'Sullivan, Ewan; Paggi, Alessandro; Trinchieri, Ginevra

    2016-01-01

    We present the new results from the Chandra Galaxy Atlas prpject. We have systematically analyzed the archival Chandra data of 50 early type galaxies to study their hot ISM. Taking full advantage of the Chandra capabilities, we produced spatially resolved data products with additional spectral information. We will make these products publicly available and use them for our focused science goals, e.g., gas morphology, scaling relation, X-ray based mass profile, circum-nuclear gas.

  11. Topographical atlas sheets

    USGS Publications Warehouse

    Wheeler, George Montague

    1876-01-01

    The following topographical atlas sheets, accompanying Appendix J.J. of the Annual Report of the Chief of Engineers, U.S. Army-being Annual Report upon U. S. Geographical Surveys-have been published during the fiscal year ending June 30, 1876, and are a portion of the series projected to embrace the territory of the United States lying west of the 100th meridian.

  12. WESTCARB Carbon Atlas

    DOE Data Explorer

    The West Coast Regional Carbon Sequestration Partnership (known as WESTCARB) was established in Fall 2003. It is one of seven research partnerships co-funded by DOE to characterize regional carbon sequestration opportunities and conduct pilot-scale validation tests. The California Energy Commission manages WESTCARB and is a major co-funder. WESTCARB is characterizing the extent and capacity of geologic formations capable of storing CO2, known as sinks. Results are entered into a geographic information system (GIS) database, along with the location of major CO2-emitting point sources in each of the six WESTCARB states, enabling researchers and the public to gauge the proximity of candidate CO2 storage sites to emission sources and the feasibility of linking them via pipelines. Specifically, the WESTCARB GIS database (also known as the carbon atlas) stores layers of geologic information about potential underground storage sites, such as porosity and nearby fault-lines and aquifers. Researchers use these data, along with interpreted geophysical data and available oil and gas well logs to estimate the region's potential geologic storage capacity. The database also depicts existing pipeline routes and rights-of-way and lands that could be off-limits, which can aid the development of a regional carbon management strategy. The WESTCARB Carbon Atlas, which is accessible to the public, provides a resource for public discourse on practical solutions for regional CO2 management. A key WESTCARB partner, the Utah Automated Geographic Reference Center, has developed data serving procedures to enable the WESTCARB Carbon Atlas to be integrated with those from other regional partnerships, thereby supporting the U.S. Department of Energy's national carbon atlas, NATCARB

  13. ATLAS reliability analysis

    SciTech Connect

    Bartsch, R.R.

    1995-09-01

    Key elements of the 36 MJ ATLAS capacitor bank have been evaluated for individual probabilities of failure. These have been combined to estimate system reliability which is to be greater than 95% on each experimental shot. This analysis utilizes Weibull or Weibull-like distributions with increasing probability of failure with the number of shots. For transmission line insulation, a minimum thickness is obtained and for the railgaps, a method for obtaining a maintenance interval from forthcoming life tests is suggested.

  14. Volatile compounds in a spanish red wine aged in barrels made of Spanish, French, and American oak wood.

    PubMed

    De Simón, Brígida Fernández; Cadahía, Estrella; Jalocha, Jerzy

    2003-12-17

    A red Rioja wine was aged in barrels made of Spanish oak wood (Quercus robur, Quercus petraea,Quercus pyrenaica, and Quercus faginea) during 21 months. The concentrations of some volatile compounds [syringaldehyde, vanillin, eugenol, maltol, guaiacol, 4-ethylphenol, cis and trans isomers of beta-methyl-gamma-octalactone, 2-furfuraldehyde, 5-methyl-2-furfuraldehyde, 5-(hydroxymethyl)-2-furfuraldehyde, and furfuryl alcohol] were studied in these wines and compared with those of the same wine aged in barrels made from French oak of Q. robur (Limousin, France) and Q. petraea (Allier, France) and American oak of Quercus alba (Missouri). Similar concentrations of these compounds were found in wines aged in Spanish and French oak wood barrels, and significantly different concentrations were found with respect to wines aged in barrels made of American oak wood, indicating a different behavior. Thus, wines with different characteristics were obtained, depending on the kind of wood. Also, the kind of wood had an important influence on sensory characteristics of wine during the aging process. Spanish oak wood from Q. robur, Q. petraea, and Q. pyrenaica can be considered to be suitable for barrel production for quality wines, because a wine aged in barrels made of these Spanish oak woods showed similar and intermediate characteristics to those of the same wine aged in French and American oak woods usually used in cooperage.

  15. Resource Utilization by the ATLAS High Level Trigger during 2010 and 2011 LHC running

    NASA Astrophysics Data System (ADS)

    Lipeles, Elliot; Ospanov, Rustem; Schaefer, Doug

    2012-12-01

    Since starting in 2010, the Large Hadron Collider (LHC) has produced collisions at an ever increasing rate. The ATLAS experiment successfully recorded the collision data with high efficiency and excellent data quality. Events were selected using a three-level trigger system, where each level made a more refined selection. The Level 1 (L1) trigger consisted of a custom-designed hardware trigger which seeded two higher software based trigger levels. Over 300 triggers composed a trigger menu which selected physics signatures such as electrons, muons, particle jets, etc. Each trigger consumed computing resources of the ATLAS Trigger system and offline storage. The LHC instantaneous luminosity conditions, desired physics goals of the collaboration, and the limits of the trigger infrastructure determined the composition of the ATLAS Trigger menu. We describe a trigger monitoring framework called the Cost Monitoring Framework for computing the costs of individual trigger algorithms such as data request rates and CPU consumption. This framework was used to prepare the ATLAS Trigger for data taking during increases of more than six orders of magnitude in the LHC luminosity and has been influential in guiding ATLAS Trigger computing upgrades.

  16. ATLAS: Forecasting Falling Rocks

    NASA Astrophysics Data System (ADS)

    Heinze, Aren; Tonry, John L.; Denneau, Larry; Stalder, Brian; Sherstyuk, Andrei

    2016-10-01

    The Asteroid Terrestrial-impact Last Alert System (ATLAS) is a new asteroid survey aimed at detecting small (10-100 meter) asteroids inbound for impact with Earth. Relative to the larger objects targeted by most surveys, these small asteroids pose very different threats to our planet. Large asteroids can be seen at great distances and measured over many years, resulting in precise orbits that enable long-term impact predictions. If an impact were predicted, a costly deflection mission would be warranted to avert global catastrophe -- but a large asteroid impact is very unlikely in the next century. By contrast, impacts from small asteroids are inevitable. Such objects can be detected only during close encounters with Earth -- encounters too brief to yield long-term predictions. Only a few days' warning could be expected for an impactor in the 10-100 meter range, but fortunately the impact of such an asteroid would cause only regional damage. As in the case of a hurricane, a quixotic attempt to deflect or destroy it would be more expensive than the damage from its impact. A better response is to save human lives by evacuating the impact zone, and then rebuild. Only a few days warning are needed for this purpose, and ATLAS is unique among asteroid surveys in being optimized to provide it. While the optimization has many facets, the most important is rapidly surveying the entire accessible sky. A small asteroid could come from any direction and go from invisibility to impact in less than a week: ATLAS must look everywhere, all the time. Sky coverage is more important than exquisite sensitivity to faint objects, because asteroids inbound for impact will eventually become quite bright. This makes ATLAS complementary to other surveys, which scan the sky at a more leisurely pace but are able to detect asteroids at greater distances. We report on ATLAS' first year of survey operations, including the maturing of robotic observation and detection strategies, and asteroid and

  17. L1 track triggers for ATLAS in the HL-LHC

    SciTech Connect

    Lipeles, E.

    2012-01-01

    The HL-LHC, the planned high luminosity upgrade for the LHC, will increase the collision rate in the ATLAS detector approximately a factor of 5 beyond the luminosity for which the detectors were designed, while also increasing the number of pile-up collisions in each event by a similar factor. This means that the level-1 trigger must achieve a higher rejection factor in a more difficult environment. This presentation discusses the challenges that arise in this environment and strategies being considered by ATLAS to include information from the tracking systems in the level-1 decision. The main challenges involve reducing the data volume exported from the tracking system for which two options are under consideration: a region of interest based system and an intelligent sensor method which filters on hits likely to come from higher transverse momentum tracks.

  18. L1 track triggers for ATLAS in the HL-LHC

    DOE PAGESBeta

    Lipeles, E.

    2012-01-01

    The HL-LHC, the planned high luminosity upgrade for the LHC, will increase the collision rate in the ATLAS detector approximately a factor of 5 beyond the luminosity for which the detectors were designed, while also increasing the number of pile-up collisions in each event by a similar factor. This means that the level-1 trigger must achieve a higher rejection factor in a more difficult environment. This presentation discusses the challenges that arise in this environment and strategies being considered by ATLAS to include information from the tracking systems in the level-1 decision. The main challenges involve reducing the data volumemore » exported from the tracking system for which two options are under consideration: a region of interest based system and an intelligent sensor method which filters on hits likely to come from higher transverse momentum tracks.« less

  19. ATLAS 1: Encountering Planet Earth

    NASA Technical Reports Server (NTRS)

    Shea, Charlotte; Mcmahan, Tracy; Accardi, Denise; Tygielski, Michele; Mikatarian, Jeff; Wiginton, Margaret (Editor)

    1984-01-01

    Several NASA science programs examine the dynamic balance of sunlight, atmosphere, water, land, and life that governs Earth's environment. Among these is a series of Space Shuttle-Spacelab missions, named the Atmospheric Laboratory for Applications and Science (ATLAS). During the ATLAS missions, international teams of scientists representing many disciplines combine their expertise to seek answers to complex questions about the atmospheric and solar conditions that sustain life on Earth. The ATLAS program specifically investigates how Earth's middle atmosphere and upper atmospheres and climate are affected by both the Sun and by products of industrial and agricultural activities on Earth.

  20. Automated Loads Analysis System (ATLAS)

    NASA Technical Reports Server (NTRS)

    Gardner, Stephen; Frere, Scot; O’Reilly, Patrick

    2013-01-01

    ATLAS is a generalized solution that can be used for launch vehicles. ATLAS is used to produce modal transient analysis and quasi-static analysis results (i.e., accelerations, displacements, and forces) for the payload math models on a specific Shuttle Transport System (STS) flight using the shuttle math model and associated forcing functions. This innovation solves the problem of coupling of payload math models into a shuttle math model. It performs a transient loads analysis simulating liftoff, landing, and all flight events between liftoff and landing. ATLAS utilizes efficient and numerically stable algorithms available in MSC/NASTRAN.

  1. Quad-barrel multifunctional electrochemical and ion conductance probe for voltammetric analysis and imaging.

    PubMed

    Nadappuram, Binoy Paulose; McKelvey, Kim; Byers, Joshua C; Güell, Aleix G; Colburn, Alex W; Lazenby, Robert A; Unwin, Patrick R

    2015-04-01

    The fabrication and use of a multifunctional electrochemical probe incorporating two independent carbon working electrodes and two electrolyte-filled barrels, equipped with quasi-reference counter electrodes (QRCEs), in the end of a tapered micrometer-scale pipet is described. This "quad-probe" (4-channel probe) was fabricated by depositing carbon pyrolytically into two diagonally opposite barrels of a laser-pulled quartz quadruple-barrelled pipet. After filling the open channels with electrolyte solution, a meniscus forms at the end of the probe and covers the two working electrodes. The two carbon electrodes can be used to drive local electrochemical reactions within the meniscus while a bias between the QRCEs in the electrolyte channels provides an ion conductance signal that is used to control and position the meniscus on a surface of interest. When brought into contact with a surface, localized high resolution amperometric imaging can be achieved with the two carbon working electrodes with a spatial resolution defined by the meniscus contact area. The substrate can be an insulating material or (semi)conductor, but herein, we focus mainly on conducting substrates that can be connected as a third working electrode. Studies using both aqueous and ionic liquid electrolytes in the probe, together with gold and individual single walled carbon nanotube samples, demonstrate the utility of the technique. Substrate generation-dual tip collection measurements are shown to be characterized by high collection efficiencies (approaching 100%). This hybrid configuration of scanning electrochemical microscopy (SECM) and scanning electrochemical cell microscopy (SECCM) should be powerful for future applications in electrode mapping, as well as in studies of insulating materials as demonstrated by transient spot redox-titration measurements at an electrostatically charged Teflon surface and at a pristine calcite surface, where a functionalized probe is used to follow the

  2. Episodic barrel rotations induced by intrastriatal injection of quinolinic acid in rats. Inhibition by anticonvulsants.

    PubMed

    Marrannes, R; Wauquier, A

    1988-09-01

    Unilateral intrastriatal injection of quinolinic acid (2,3 pyridine dicarboxylate; QUIN) in the rat produces episodic barrel rotations and tonic-clonic forepaw movements, lasting for several hours. We investigated whether intraperitoneal posttreatment with anticonvulsants could abolish this phenomenon when it is already fully developed, and whether their potency ratio was similar in models of epilepsy. All 8 tested antiepileptics, namely carbamazepine, clonazepam, diazepam, diphenylhydantoin, ethosuximide, flunarizine, phenobarbital and sodium valproate decreased this behaviour in a dose-dependent way. Six other drugs with anticonvulsant properties were also effective: DL-2-amino-7-phosphonoheptanoic acid, desipramine, etomidate, ketamine, meprobamate and sabeluzole. The ED50-values for halving the frequency of the episodes of barrel rotation correlated well with published ED50-values for inhibition of tonic hindpaw extension in the maximal metrazol seizure test (rs = .95, p less than 0.001) and with the ED50-values for halving the duration of the forepaw clonus in the rat-kindling model (rs = .93, p less than 0.001). This quinolinic acid test allows visualization of the onset of action of anticonvulsants, with each animal as its own control. In order to assess whether this test is also sensitive to drugs influencing the symptoms of Huntington's disease, the effect of the dopamine antagonists haloperidol and pimozide, the acetylcholinesterase inhibitor physostigmine and the anticholinergics atropine and dexetimide were investigated as well. The experiments suggested that the barrel rotations and clonic forepaw movements, only 3-6 hours after intrastriatal injection of QUIN respond to anticonvulsants, but are not specifically sensitive to drugs used in the symptomatic treatment of Huntington's disease. PMID:2978064

  3. The design and performance of a twenty barrel hydrogen pellet injector for Alcator C-Mod

    SciTech Connect

    Urbahn, J.A.

    1994-05-01

    A twenty barrel hydrogen pellet injector has been designed, built and tested both in the laboratory and on the Alcator C-Mod Tokamak at MIT. The injector functions by firing pellets of frozen hydrogen or deuterium deep into the plasma discharge for the purpose of fueling the plasma, modifying the density profile and increasing the global energy confinement time. The design goals of the injector are: (1) Operational flexibility, (2) High reliability, (3) Remote operation with minimal maintenance. These requirements have lead to a single stage, pipe gun design with twenty barrels. Pellets are formed by in- situ condensation of the fuel gas, thus avoiding moving parts at cryogenic temperatures. The injector is the first to dispense with the need for cryogenic fluids and instead uses a closed cycle refrigerator to cool the thermal system components. The twenty barrels of the injector produce pellets of four different size groups and allow for a high degree of flexibility in fueling experiments. Operation of the injector is under PLC control allowing for remote operation, interlocked safety features and automated pellet manufacturing. The injector has been extrusively tested and shown to produce pellets reliably with velocities up to 1400 m/sec. During the period from September to November of 1993, the injector was successfully used to fire pellets into over fifty plasma discharges. Experimental results include data on the pellet penetration into the plasma using an advanced pellet tracking diagnostic with improved time and spatial response. Data from the tracker indicates pellet penetrations were between 30 and 86 percent of the plasma minor radius.

  4. Precise mapping of the magnetic field in the CMS barrel yoke using cosmic rays

    SciTech Connect

    Chatrchyan, S.; et al.,

    2010-03-01

    The CMS detector is designed around a large 4 T superconducting solenoid, enclosed in a 12000-tonne steel return yoke. A detailed map of the magnetic field is required for the accurate simulation and reconstruction of physics events in the CMS detector, not only in the inner tracking region inside the solenoid but also in the large and complex structure of the steel yoke, which is instrumented with muon chambers. Using a large sample of cosmic muon events collected by CMS in 2008, the field in the steel of the barrel yoke has been determined with a precision of 3 to 8% depending on the location.

  5. Seismic analysis of liquid-filled tanks with an eccentric core barrel

    SciTech Connect

    Liu, W.K.; Gvildys, J.

    1985-01-01

    The seismic analysis of fluid-coupled concentric cylindrical shells is reviewed. A coupled fluid-structure finite element method which considers the sloshing effect is then developed for the seismic analysis of liquid-filled systems with internal components. The theoretical development of the mixed finite element formulation is also included. The resulting fluid-structure interaction algorithm has been integrated into the computer code FLUSTR II and the seismic analysis of liquid-filled tanks with an eccentric core barrel is performed. Numerical results show the method yields accurate solutions with large increases in efficiency.

  6. Subintimal Double-Barrel Restenting of an Occluded Primary Stented Superficial Femoral Artery

    SciTech Connect

    Duterloo, Dirk Lohle, Paul N.M.; Lampmann, Leo E.H.

    2007-06-15

    In-stent re-stenosis is a frequent complication of endovascular stents, especially in the superficial femoral artery (SFA). Endovascular re-intervention of in- or peri-stent occlusive disease consists of recanilization through the occluded stent. In our case report, we describe the endovascular treatment of a previously placed stent in the SFA. We unintentionally passed the affected stent subintimally, in a double barrel fashion next to the first stent. The procedure was without any complications and with a successful angiographic result. At one year follow-up the patient still has no complaints and the stent is still patent.

  7. Design, performance, and calibration of CMS hadron-barrel calorimeter wedges

    NASA Astrophysics Data System (ADS)

    Abdullin, S.; Abramov, V.; Acharya, B.; Adams, M.; Akchurin, N.; Akgun, U.; Anderson, E. W.; Antchev, G.; Ayan, S.; Aydin, S.; Baarmand, M.; Baden, D.; Banerjee, Sud.; Banerjee, Sun.; Bard, R.; Barnes, V.; Bawa, H.; Baiatian, G.; Bencze, G.; Beri, S.; Bhatnagar, V.; Bodek, A.; Budd, H.; Burchesky, K.; Camporesi, T.; Cankoçak, K.; Carrell, K.; Chendvankar, S.; Chung, Y.; Cremaldi, L.; Cushman, P.; Damgov, J.; de Barbaro, P.; Demianov, A.; de Visser, T.; Dimitrov, L.; Dugad, S.; Dumanoglu, I.; Duru, F.; Elias, J.; Elvira, D.; Emeliantchik, I.; Eno, S.; Ershov, A.; Eskut, E.; Fisher, W.; Freeman, J.; Gavrilov, V.; Genchev, V.; Gershtein, Y.; Golutvin, I.; Goncharov, P.; Grassi, T.; Green, D.; Gribushin, A.; Grinev, B.; Gülmez, E.; Gümüş, K.; Haelen, T.; Hagopian, S.; Hagopian, V.; Hauptman, J.; Hazen, E.; Heering, A.; Imboden, M.; Isiksal, E.; Jarvis, C.; Johnson, K.; Kaftanov, V.; Kalagin, V.; Karmgard, D.; Kalmani, S.; Katta, S.; Kaur, M.; Kaya, M.; Kayis-Topaksu, A.; Kellogg, R.; Khmelnikov, A.; Kisselevich, I.; Kodolova, O.; Kohli, J.; Kolossov, V.; Korablev, A.; Korneev, Y.; Kosarev, I.; Krinitsyn, A.; Krokhotin, A.; Kryshkin, V.; Kuleshov, S.; Kumar, A.; Kunori, S.; Polatoz, A.; Laasanen, A.; Lawlor, C.; Lazic, D.; Levchuk, L.; Litvintsev, D.; Litov, L.; Los, S.; Lubinsky, V.; Lukanin, V.; Machado, E.; Mans, J.; Massolov, V.; Mazumdar, K.; Merlo, J. P.; Mescheryakov, G.; Mestvirishvili, A.; Miller, M.; Mondal, N.; Nagaraj, P.; Norbeck, E.; O'Dell, V.; Olson, J.; Onel, Y.; Onengut, G.; Ozdes-Koca, N.; Ozkorucuklu, S.; Ozok, F.; Paktinat, S.; Patil, M.; Petrushanko, S.; Pikalov, V.; Piperov, S.; Podrasky, V.; Pompos, A.; Posch, C.; Qian, W.; Ralich, R.; Reddy, L.; Reidy, J.; Ruchti, R.; Rohlf, J.; Ronzhin, A.; Ryazanov, A.; Sanders, D. A.; Sanzeni, C.; Sarycheva, L.; Satyanarayana, B.; Schmidt, I.; Senchishin, V.; Sergeyev, S.; Serin-Zeyrek, M.; Sever, R.; Singh, J.; Sirunyan, A.; Skuja, A.; Sherwood, B.; Shumeiko, N.; Smirnov, V.; Sorokin, P.; Stefanovich, R.; Stolin, V.; Sudhakar, K.; Suzuki, I.; Talov, V.; Thomas, R.; Tully, C.; Turchanovich, L.; Ulyanov, A.; Vankov, I.; Vardanyan, I.; Verma, P.; Vesztergombi, G.; Vidal, R.; Vlassov, E.; Vodopiyanov, I.; Volkov, A.; Volodko, A.; Winn, D.; Whitmore, J.; Wu, S. X.; Zalan, P.; Zarubin, A.; Zeyrek, M.

    2008-05-01

    Extensive measurements have been made with pions, electrons and muons on four production wedges of the compact muon solenoid (CMS) hadron barrel (HB) calorimeter in the H2 beam line at CERN with particle momenta varying from 20 to 300 GeV/ c. The time structure of the events was measured with the full chain of preproduction front-end electronics running at 34 MHz. Moving-wire radioactive source data were also collected for all scintillator layers in the HB. The energy dependent time slewing effect was measured and tuned for optimal performance.

  8. Compressibility and Heating Effects on Pressure Loss and Cooling of a Baffled Cylinder Barrel

    NASA Technical Reports Server (NTRS)

    Goldstein, Arthur W; Ellerbrock, Herman H , Jr

    1944-01-01

    Theoretical investigations have shown that, because air is compressible, the pressure-drop requirements for cooling an air-cooled engine will be much greater at high altitudes and high speeds than at sea level and low speeds. Tests were conducted by the NACA to obtain some experimental confirmation of the effect of air compressibility on cooling and pressure loss of a baffled cylinder barrel and to evaluate various methods of analysis. The results reported in the present paper are regarded as preliminary to tests on single-cylinder and multicylinder engines. Tests were conducted over a wide range of air flows and density altitudes.

  9. Correlations Decrease with Propagation of Spiking Activity in the Mouse Barrel Cortex

    PubMed Central

    Ranganathan, Gayathri Nattar; Koester, Helmut Joachim

    2011-01-01

    Propagation of suprathreshold spiking activity through neuronal populations is important for the function of the central nervous system. Neural correlations have an impact on cortical function particularly on the signaling of information and propagation of spiking activity. Therefore we measured the change in correlations as suprathreshold spiking activity propagated between recurrent neuronal networks of the mammalian cerebral cortex. Using optical methods we recorded spiking activity from large samples of neurons from two neural populations simultaneously. The results indicate that correlations decreased as spiking activity propagated from layer 4 to layer 2/3 in the rodent barrel cortex. PMID:21629764

  10. Preliminary analysis of cross beam data from the Gun Barrel Hill site

    NASA Technical Reports Server (NTRS)

    Sandborn, V. A.; Bice, A. R.; Cliff, W. C.; Hablutzel, B. C.

    1974-01-01

    Preliminary evaluation of cross beam data taken at the Gun Barrell Hill test site of ESSA is presented. The evaluation is made using the analog Princeton Time Correlator. A study of the frequency band width limitations of the Princeton Time Correlator is made. Based on the band width limitations, it is possible to demonstrate that nearly identical correlation is obtained for frequencies from .01 to 3.9 hertz. Difficulty is encountered in that maximums in the correlation curves do not occur at zero time lag for zero beam separations.

  11. Methodology of Lithuanian climate atlas mapping

    NASA Astrophysics Data System (ADS)

    Valiukas, Donatas; Galvonaitė, Audronė; Česnulevičius, Algimantas

    2015-06-01

    Climate atlases summarize large sets of quantitative and qualitative data and are results of complex analytical cartographic work. These special geographical publications summarize long term meteorological observations, provide maps and figures which characterise different climate elements. Visual information is supplemented with explanatory texts. A lot of information on short and long term changes of climate elements were provided in published Lithuanian atlases (Atlas of Lithuanian SDR, 1981; Climate Atlas of Lithuania, 2013), as well as in prepared but unpublished Lithuanian Atlas (1989) and in upcoming new national atlas publications (National Atlas of Lithuania. 1st part, 2014). Climate atlases has to be constantly updated to be relevant and to describe current climate conditions. Comprehensive indicators of Lithuanian climate are provided in different cartographic publications. Different time periods, various data sets and diverse cartographic data analysis tools and visualisation methods were used in these different publications.

  12. MarsAtlas: A cortical parcellation atlas for functional mapping.

    PubMed

    Auzias, Guillaume; Coulon, Olivier; Brovelli, Andrea

    2016-04-01

    An open question in neuroimaging is how to develop anatomical brain atlases for the analysis of functional data. Here, we present a cortical parcellation model based on macroanatomical information and test its validity on visuomotor-related cortical functional networks. The parcellation model is based on a recently developed cortical parameterization method (Auzias et al., [2013]: IEEE Trans Med Imaging 32:873-887), called HIP-HOP. This method exploits a set of primary and secondary sulci to create an orthogonal coordinate system on the cortical surface. A natural parcellation scheme arises from the axes of the HIP-HOP model running along the fundus of selected sulci. The resulting parcellation scheme, called MarsAtlas, complies with dorsoventral/rostrocaudal direction fields and allows inter-subject matching. To test it for functional mapping, we analyzed a MEG dataset collected from human participants performing an arbitrary visuomotor mapping task. Single-trial high-gamma activity, HGA (60-120 Hz), was estimated using spectral analysis and beamforming techniques at cortical areas arising from a Talairach atlas (i.e., Brodmann areas) and MarsAtlas. Using both atlases, we confirmed that visuomotor associations involve an increase in HGA over the sensorimotor and fronto-parietal network, in addition to medial prefrontal areas. However, MarsAtlas provided: (1) crucial functional information along both the dorsolateral and rostrocaudal direction; (2) an increase in statistical significance. To conclude, our results suggest that the MarsAtlas is a valid anatomical atlas for functional mapping, and represents a potential anatomical framework for integration of functional data arising from multiple techniques such as MEG, intracranial EEG and fMRI. PMID:26813563

  13. 76 FR 24038 - Agency Information Collection Activities: Proposed Collection; Comment Request, 1660-NEW; Level 1...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-29

    ...; Comment Request, 1660-NEW; Level 1 Assessment and Level III Evaluations for the Center for Domestic... for comments; new information collection; OMB No. 1660-NEW; FEMA Form 092-0-2, Level 1 Assessment Form; FEMA Form 092-0-2A, Level 3 Evaluation Form for Students; FEMA Form 092-0-2B, Level 3 Evaluation...

  14. Manual of Tape Scripts: Italian, Level 1. Curriculum Bulletin, 1968-69 Series, Number 12.

    ERIC Educational Resources Information Center

    Lipton, Gladys; And Others

    This manual of tape scripts, together with a set of foreign language audio tapes for level 1 Italian, was prepared to support the curriculum bulletin, New York City Foreign Language Program for Schools: Italian, Levels 1-4. Vocabulary, repetition, transformation, and recombination drills on specific grammatical features allow further development…

  15. Manual of Tape Scripts: German, Level 1. Curriculum Bulletin, 1968-69 Series, Number 11.

    ERIC Educational Resources Information Center

    Lipton, Gladys; And Others

    This manual of tape scripts, together with a set of foreign language audio tapes for level 1 German, was prepared to support the curriculum bulletin, New York City Foreign Language Program for Secondary Schools: German, Levels 1-4. Vocabulary, repetition, transformation, and recombination drills on specific grammatical features allow further…

  16. BioFuels Atlas (Presentation)

    SciTech Connect

    Moriarty, K.

    2011-02-01

    Presentation for biennial merit review of Biofuels Atlas, a first-pass visualization tool that allows users to explore the potential of biomass-to-biofuels conversions at various locations and scales.

  17. Ceres' sunlight atlas

    NASA Astrophysics Data System (ADS)

    Molaro, P.; Centurión, M.

    2011-01-01

    Context. Astronomical research dealing with accurate radial velocity measurements need reliable astronomical standards to calibrate the spectrographs and to assess possible systematics. Stellar radial velocity standards offer a reference at the level of a few hundred m s-1 and are not adequate for most present needs. Aims: We aim to show that sunlight reflected by asteroids is a fairly accessible way to record a high-resolution solar spectrum from the whole disk, which can therefore be used as a radial velocity standard and can improve the uncertainties of solar line positions. Methods: We used solar light reflected by the asteroid Ceres observed with HARPS to measure solar lines' wavelengths. Results: We provide a new solar atlas with 491 line wavelengths in the range 540-690 nm and 222 lines in the range 400-410 nm obtained from reflected solar spectrum of Ceres. These measurements are consistent with those of Allende Prieto & Garcia Lopez (1998b) based on FTS solar atlases but with a factor 3 higher precision. Conclusions: This atlas provides a benchmark for wavelength calibration to check radial velocity accuracy down to 44 m s-1 locally and a few m s-1 globally. The asteroid-based technique could provide a new way to track radial velocity shifts with solar activity cycle, as well as to derive convective shifts suitable for comparison with theoretical atmospheric models. It could also be used to study radial velocity deviations in spectrographs such as those recently detected in HIRES and UVES. Dedicated HARPS observations of other asteroids could improve present results substantially and these investigations have been solicited. Full Table 2 is only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/525/A74

  18. Operation of the enhanced ATLAS First Level Calorimeter Trigger at the start of Run-2

    NASA Astrophysics Data System (ADS)

    Palka, Marek

    2016-02-01

    In 2015 the LHC is already operating with a higher centre-of-mass energy and proton beam luminosity. To keep high trigger efficiency with the increased event rate ATLAS Level-1 Calorimeter Trigger electronics have been re-designed or newly introduced (Pre-Processors, Merging Modules and Topological Processors). Additionally, to achieve the best possible resolution for the reconstructed physics objects, complex calibration and monitoring systems are employed. Hit rates and energy spectra down to channel level, based on reconstructed events, are supervised with the calorimeter trigger hardware. In this paper the performance of the upgraded Level-1 Calorimeter Trigger at the beginning of LHC Run-2 is described.

  19. Alaska marine ice atlas

    SciTech Connect

    LaBelle, J.C.; Wise, J.L.; Voelker, R.P.; Schulze, R.H.; Wohl, G.M.

    1982-01-01

    A comprehensive Atlas of Alaska marine ice is presented. It includes information on pack and landfast sea ice and calving tidewater glacier ice. It also gives information on ice and related environmental conditions collected over several years time and indicates the normal and extreme conditions that might be expected in Alaska coastal waters. Much of the information on ice conditions in Alaska coastal waters has emanated from research activities in outer continental shelf regions under assessment for oil and gas exploration and development potential. (DMC)

  20. The ATLAS TRT electronics

    NASA Astrophysics Data System (ADS)

    ATLAS TRT Collaboration; Abat, E.; Addy, T. N.; Åkesson, T. P. A.; Alison, J.; Anghinolfi, F.; Arik, E.; Arik, M.; Atoian, G.; Auerbach, B.; Baker, O. K.; Banas, E.; Baron, S.; Bault, C.; Becerici, N.; Beddall, A.; Beddall, A. J.; Bendotti, J.; Benjamin, D. P.; Bertelsen, H.; Bingul, A.; Blampey, H.; Bocci, A.; Bochenek, M.; Bondarenko, V. G.; Bychkov, V.; Callahan, J.; Capeáns Garrido, M.; Cardiel Sas, L.; Catinaccio, A.; Cetin, S. A.; Chandler, T.; Chritin, R.; Cwetanski, P.; Dam, M.; Danielsson, H.; Danilevich, E.; David, E.; Degenhardt, J.; Di Girolamo, B.; Dittus, F.; Dixon, N.; Dogan, O. B.; Dolgoshein, B. A.; Dressnandt, N.; Driouchi, C.; Ebenstein, W. L.; Eerola, P.; Egede, U.; Egorov, K.; Evans, H.; Farthouat, P.; Fedin, O. L.; Fowler, A. J.; Fratina, S.; Froidevaux, D.; Fry, A.; Gagnon, P.; Gavrilenko, I. L.; Gay, C.; Ghodbane, N.; Godlewski, J.; Goulette, M.; Gousakov, I.; Grigalashvili, N.; Grishkevich, Y.; Grognuz, J.; Hajduk, Z.; Hance, M.; Hansen, F.; Hansen, J. B.; Hansen, P. H.; Hare, G. A.; Harvey, A., Jr.; Hauviller, C.; High, A.; Hulsbergen, W.; Huta, W.; Issakov, V.; Istin, S.; Jain, V.; Jarlskog, G.; Jeanty, L.; Kantserov, V. A.; Kaplan, B.; Kapliy, A. S.; Katounin, S.; Kayumov, F.; Keener, P. T.; Kekelidze, G. D.; Khabarova, E.; Khristachev, A.; Kisielewski, B.; Kittelmann, T. H.; Kline, C.; Klinkby, E. B.; Klopov, N. V.; Ko, B. R.; Koffas, T.; Kondratieva, N. V.; Konovalov, S. P.; Koperny, S.; Korsmo, H.; Kovalenko, S.; Kowalski, T. Z.; Krüger, K.; Kramarenko, V.; Kudin, L. G.; LeBihan, A.-C.; LeGeyt, B. C.; Levterov, K.; Lichard, P.; Lindahl, A.; Lisan, V.; Lobastov, S.; Loginov, A.; Loh, C. W.; Lokwitz, S.; Long, M. C.; Lucas, S.; Lucotte, A.; Luehring, F.; Lundberg, B.; Mackeprang, R.; Maleev, V. P.; Manara, A.; Mandl, M.; Martin, A. J.; Martin, F. F.; Mashinistov, R.; Mayers, G. M.; McFarlane, K. W.; Mialkovski, V.; Mills, B. M.; Mindur, B.; Mitsou, V. A.; Mjörnmark, J. U.; Morozov, S. V.; Morris, E.; Mouraviev, S. V.; Muir, A. M.; Munar, A.; Nadtochi, A. V.; Nesterov, S. Y.; Newcomer, F. M.; Nikitin, N.; Novgorodova, O.; Novodvorski, E. G.; Ogren, H.; Oh, S. H.; Oleshko, S. B.; Olivito, D.; Olszowska, J.; Ostrowicz, W.; Passmore, M. S.; Patrichev, S.; Penwell, J.; Perez-Gomez, F.; Peshekhonov, V. D.; Petersen, T. C.; Petti, R.; Placci, A.; Poblaguev, A.; Pons, X.; Price, M. J.; Røhne, O.; Reece, R. D.; Reilly, M. B.; Rembser, C.; Romaniouk, A.; Rousseau, D.; Rust, D.; Ryabov, Y. F.; Ryjov, V.; Söderberg, M.; Savenkov, A.; Saxon, J.; Scandurra, M.; Schegelsky, V. A.; Scherzer, M. I.; Schmidt, M. P.; Schmitt, C.; Sedykh, E.; Seliverstov, D. M.; Shin, T.; Shmeleva, A.; Sivoklokov, S.; Smirnov, S. Yu; Smirnova, L.; Smirnova, O.; Smith, P.; Sosnovtsev, V. V.; Sprachmann, G.; Subramania, S.; Suchkov, S. I.; Sulin, V. V.; Szczygiel, R. R.; Tartarelli, G.; Thomson, E.; Tikhomirov, V. O.; Tipton, P.; Valls Ferrer, J. A.; Van Berg, R.; Vassilakopoulos, V. I.; Vassilieva, L.; Wagner, P.; Wall, R.; Wang, C.; Whittington, D.; Williams, H. H.; Zhelezko, A.; Zhukov, K.

    2008-06-01

    The ATLAS inner detector consists of three sub-systems: the pixel detector spanning the radius range 4cm-20cm, the semiconductor tracker at radii from 30 to 52 cm, and the transition radiation tracker (TRT), tracking from 56 to 107 cm. The TRT provides a combination of continuous tracking with many projective measurements based on individual drift tubes (or straws) and of electron identification based on transition radiation from fibres or foils interleaved between the straws themselves. This paper describes the on and off detector electronics for the TRT as well as the TRT portion of the data acquisition (DAQ) system.

  1. Neonatal Atlas Construction Using Sparse Representation

    PubMed Central

    Shi, Feng; Wang, Li; Wu, Guorong; Li, Gang; Gilmore, John H.; Lin, Weili; Shen, Dinggang

    2014-01-01

    Atlas construction generally includes first an image registration step to normalize all images into a common space and then an atlas building step to fuse the information from all the aligned images. Although numerous atlas construction studies have been performed to improve the accuracy of the image registration step, unweighted or simply weighted average is often used in the atlas building step. In this article, we propose a novel patch-based sparse representation method for atlas construction after all images have been registered into the common space. By taking advantage of local sparse representation, more anatomical details can be recovered in the built atlas. To make the anatomical structures spatially smooth in the atlas, the anatomical feature constraints on group structure of representations and also the overlapping of neighboring patches are imposed to ensure the anatomical consistency between neighboring patches. The proposed method has been applied to 73 neonatal MR images with poor spatial resolution and low tissue contrast, for constructing a neonatal brain atlas with sharp anatomical details. Experimental results demonstrate that the proposed method can significantly enhance the quality of the constructed atlas by discovering more anatomical details especially in the highly convoluted cortical regions. The resulting atlas demonstrates superior performance of our atlas when applied to spatially normalizing three different neonatal datasets, compared with other start-of-the-art neonatal brain atlases. PMID:24638883

  2. ATLAS Series of Shuttle Missions. Volume 23

    NASA Technical Reports Server (NTRS)

    1996-01-01

    This technical paper contains selected papers from Geophysical Research Letters (Volume 23, Number 17) on ATLAS series of shuttle missions. The ATLAS space shuttle missions were conducted in March 1992, April 1993, and November 1994. This paper discusses solar irradiance, middle atmospheric temperatures, and trace gas concentrations measurements made by the ATLAS payload and companion instruments.

  3. 27 CFR 9.140 - Atlas Peak.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Atlas Peak. 9.140 Section... THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.140 Atlas Peak. (a) Name. The name of the viticultural area described in this section is “Atlas Peak.”...

  4. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-09-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  5. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-06-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  6. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-08-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  7. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-10-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  8. Thalamic network oscillations synchronize ontogenetic columns in the newborn rat barrel cortex.

    PubMed

    Yang, Jenq-Wei; An, Shuming; Sun, Jyh-Jang; Reyes-Puerta, Vicente; Kindler, Jennifer; Berger, Thomas; Kilb, Werner; Luhmann, Heiko J

    2013-06-01

    Neocortical areas are organized in columns, which form the basic structural and functional modules of intracortical information processing. Using voltage-sensitive dye imaging and simultaneous multi-channel extracellular recordings in the barrel cortex of newborn rats in vivo, we found that spontaneously occurring and whisker stimulation-induced gamma bursts followed by longer lasting spindle bursts were topographically organized in functional cortical columns already at the day of birth. Gamma bursts synchronized a cortical network of 300-400 µm in diameter and were coherent with gamma activity recorded simultaneously in the thalamic ventral posterior medial (VPM) nucleus. Cortical gamma bursts could be elicited by focal electrical stimulation of the VPM. Whisker stimulation-induced spindle and gamma bursts and the majority of spontaneously occurring events were profoundly reduced by the local inactivation of the VPM, indicating that the thalamus is important to generate these activity patterns. Furthermore, inactivation of the barrel cortex with lidocaine reduced the gamma activity in the thalamus, suggesting that a cortico-thalamic feedback loop modulates this early thalamic network activity.

  9. Assaying effector function in planta using double-barreled particle bombardment.

    PubMed

    Kale, Shiv D; Tyler, Brett M

    2011-01-01

    The biolistic transient gene expression assay is a beneficial tool for studying gene function in vivo. However, biolistic transient assay systems have inherent pitfalls that often cause experimental inaccuracies such as poor transformation efficiency, which can be confused with biological phenomena. The double-barreled gene gun device is an inexpensive and highly effective attachment that enables statistically significant data to be obtained with one-tenth the number of experimental replicates compared to conventional biolistic assays. The principle behind the attachment is to perform two simultaneous bombardments with control and test DNA preparations onto the same leaf. The control bombardment measures the efficiency of the transformation while the ratio of the test bombardment to the control bombardment measures the activity of the gene of interest. With care, the ratio between the pair of bombardments can be highly reproducible from bombardment to bombardment. The double-barreled attachment has been used to study plant resistance (R) gene-mediated responses to effectors, induction and suppression of cell death by a wide variety of pathogen and host molecules, and the role of oömycete effector RXLR motifs in cell reentry.

  10. Improving the prediction of secondary structure of 'TIM-barrel' enzymes.

    PubMed

    Niermann, T; Kirschner, K

    1991-02-01

    The information contained in aligned sets of homologous protein sequences should improve the score of secondary structure prediction. Seven different enzymes having the (beta/alpha)8 or TIM-barrel fold were used to optimize the prediction with regard to this class of enzymes. The alpha-helix, beta-strand and loop propensities of the Garnier-Osguthorpe-Robson method were averaged at aligned residue positions, leading to a significant improvement over the average score obtained from single sequences. The increased accuracy correlates with the average sequence variability of the aligned set. Further improvements were obtained by using the following averaged properties as weights for the averaged state propensities: amphipathic moment and alpha-helix; hydropathy and beta-strand; chain flexibility and loop. The clustering of conserved residues at the C-terminal ends of the beta-strands was used as an additional positive weight for beta-strand propensity and increased the prediction of otherwise unpredicted beta-strands decisively. The automatic weighted prediction method identifies greater than 95% of the secondary structure elements of the set of seven TIM-barrel enzymes.

  11. Radical use of Rossmann and TIM barrel architectures for controlling coenzyme B12 chemistry.

    PubMed

    Dowling, Daniel P; Croft, Anna K; Drennan, Catherine L

    2012-01-01

    The ability of enzymes to harness free-radical chemistry allows for some of the most amazing transformations in nature, including reduction of ribonucleotides and carbon skeleton rearrangements. Enzyme cofactors involved in this chemistry can be large and complex, such as adenosylcobalamin (coenzyme B(12)), simpler, such as S-adenosylmethionine and an iron-sulfur cluster (i.e., poor man's B(12)), or very small, such as one nonheme iron atom coordinated by protein ligands. Although the chemistry catalyzed by these enzyme-bound cofactors is unparalleled, it does come at a price. The enzyme must be able to control these radical reactions, preventing unwanted chemistry and protecting the enzyme active site from damage. Here, we consider a set of radical folds: the (β/α)(8) or TIM barrel, combined with a Rossmann domain for coenzyme B(12)-dependent chemistry. Using specific enzyme examples, we consider how nature employs the common TIM barrel fold and its Rossmann domain partner for radical-based chemistry.

  12. Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry

    NASA Astrophysics Data System (ADS)

    Chapagain, Prem P.; Regmi, Chola K.; Castillo, William

    2011-12-01

    Fluorescent proteins (FPs) are valuable tools as biochemical markers for studying cellular processes. Red fluorescent proteins (RFPs) are highly desirable for in vivo applications because they absorb and emit light in the red region of the spectrum where cellular autofluorescence is low. The naturally occurring fluorescent proteins with emission peaks in this region of the spectrum occur in dimeric or tetrameric forms. The development of mutant monomeric variants of RFPs has resulted in several novel FPs known as mFruits. Though oxygen is required for maturation of the chromophore, it is known that photobleaching of FPs is oxygen sensitive, and oxygen-free conditions result in improved photostabilities. Therefore, understanding oxygen diffusion pathways in FPs is important for both photostabilites and maturation of the chromophores. In this paper, we use molecular dynamics calculations to investigate the protein barrel fluctuations in mCherry, which is one of the most useful monomeric mFruit variant. We employ implicit ligand sampling to determine oxygen pathways from the bulk solvent into the mCherry chromophore in the interior of the protein. We also show that these pathways can be blocked or altered and barrel fluctuations can be reduced by strategic amino acid substitutions.

  13. The CMS barrel calorimeter response to particle beams from 2 to 350 GeV/ c

    NASA Astrophysics Data System (ADS)

    Abdullin, S.; Abramov, V.; Acharya, B.; Adam, N.; Adams, M.; Adzic, P.; Akchurin, N.; Akgun, U.; Albayrak, E.; Alemany-Fernandez, R.; Almeida, N.; Anagnostou, G.; Andelin, D.; Anderson, E. W.; Anfreville, M.; Anicin, I.; Antchev, G.; Antunovic, Z.; Arcidiacono, R.; Arenton, M. W.; Auffray, E.; Argiro, S.; Askew, A.; Atramentov, O.; Ayan, S.; Arcidy, M.; Aydin, S.; Aziz, T.; Baarmand, M.; Babich, K.; Baccaro, S.; Baden, D.; Baffioni, S.; Bakirci, M. N.; Balazs, M.; Banerjee, Sud.; Banerjee, Sun.; Bard, R.; Barge, D.; Barnes, V.; Barney, D.; Barone, L.; Bartoloni, A.; Baty, C.; Bawa, H.; Baiatian, G.; Bandurin, D.; Beauceron, S.; Bell, K. W.; Bencze, G.; Benetta, R.; Bercher, M.; Beri, S.; Bernet, C.; Berntzon, L.; Berthon, U.; Besancon, M.; Betev, B.; Beuselinck, R.; Bhatnagar, V.; Bhatti, A.; Biino, C.; Blaha, J.; Bloch, P.; Blyth, S.; Bodek, A.; Bornheim, A.; Bose, S.; Bose, T.; Bourotte, J.; Brett, A. M.; Brown, R. M.; Britton, D.; Budd, H.; Buehler, M.; Burchesky, K.; Busson, P.; Camanzi, B.; Camporesi, T.; Cankoçak, K.; Carrell, K.; Carrera, E.; Cartiglia, N.; Cavallari, F.; Cerci, S.; Cerutti, M.; Chang, P.; Chang, Y. H.; Charlot, C.; Chen, E. A.; Chen, W. T.; Chen, Z.; Chendvankar, S.; Chipaux, R.; Choudhary, B. C.; Choudhury, R. K.; Chung, Y.; Clarida, W.; Cockerill, D. J. A.; Combaret, C.; Conetti, S.; Cossutti, F.; Cox, B.; Cremaldi, L.; Cushman, P.; Cussans, D. G.; Dafinei, I.; Damgov, J.; da Silva di Calafiori, D. R.; Daskalakis, G.; Davatz, G.; David, A.; de Barbaro, P.; Debbins, P.; Deiters, K.; Dejardin, M.; Djordjevic, M.; Deliomeroglu, M.; Della Negra, R.; Della Ricca, G.; Del Re, D.; Demianov, A.; de Min, A.; Denegri, D.; Depasse, P.; de Visser, T.; Descamps, J.; Deshpande, P. V.; Diaz, J.; Diemoz, M.; di Marco, E.; Dimitrov, L.; Dissertori, G.; Dittmar, M.; Djambazov, L.; Dobrzynski, L.; Drndarevic, S.; Duboscq, J. E.; Dugad, S.; Dumanoglu, I.; Duru, F.; Dutta, D.; Dzelalija, M.; Efthymiopoulos, I.; Elias, J.; Elliott-Peisert, A.; El Mamouni, H.; Elvira, D.; Emeliantchik, I.; Eno, S.; Ershov, A.; Erturk, S.; Esen, S.; Eskut, E.; Evangelou, I.; Evans, D. L.; Fabbro, B.; Faure, J. L.; Fay, J.; Fenyvesi, A.; Ferri, F.; Fisher, W.; Flower, P. S.; Franci, D.; Franzoni, G.; Freeman, J.; Freudenreich, K.; Funk, W.; Ganjour, S.; Gargiulo, C.; Gascon, S.; Gataullin, M.; Gaultney, V.; Gamsizkan, H.; Gavrilov, V.; Geerebaert, Y.; Genchev, V.; Gentit, F. X.; Gerbaudo, D.; Gershtein, Y.; Ghezzi, A.; Ghodgaonkar, M. D.; Gilly, J.; Givernaud, A.; Gleyzer, S.; Gninenko, S.; Go, A.; Gobbo, B.; Godinovic, N.; Golubev, N.; Golutvin, I.; Goncharov, P.; Gong, D.; Govoni, P.; Grant, N.; Gras, P.; Grassi, T.; Green, D.; Greenhalgh, R. J. S.; Gribushin, A.; Grinev, B.; Guevara Riveros, L.; Guillaud, J. P.; Gurtu, A.; Murat Güler, A.; Gülmez, E.; Gümüş, K.; Haelen, T.; Hagopian, S.; Hagopian, V.; Haguenauer, M.; Halyo, V.; Hamel de Monchenault, G.; Hansen, M.; Hashemi, M.; Hauptman, J.; Hazen, E.; Heath, H. F.; Heering, A.; Heister, A.; Heltsley, B.; Hill, J. A.; Hintz, W.; Hirosky, R.; Hobson, P. R.; Honma, A.; Hou, G. W. S.; Hsiung, Y.; Hunt, A.; Husejko, M.; Ille, B.; Ilyina, N.; Imlay, R.; Ingram, D.; Ingram, Q.; Isiksal, E.; Jarry, P.; Jarvis, C.; Jeong, C.; Jessop, C.; Johnson, K.; Jones, J.; Jovanovic, D.; Kaadze, K.; Kachanov, V.; Kaftanov, V.; Kailas, S.; Kalagin, V.; Kalinin, A.; Kalmani, S.; Karmgard, D.; Kataria, S. K.; Kaur, M.; Kaya, M.; Kaya, O.; Kayis-Topaksu, A.; Kellogg, R.; Kennedy, B. W.; Khmelnikov, A.; Kim, H.; Kisselevich, I.; Kloukinas, K.; Kodolova, O.; Kohli, J.; Kokkas, P.; Kolberg, T.; Kolossov, V.; Korablev, A.; Korneev, Y.; Kosarev, I.; Kramer, L.; Krasnikov, N.; Krinitsyn, A.; Krokhotin, A.; Krpic, D.; Kryshkin, V.; Kubota, Y.; Kubrik, A.; Kuleshov, S.; Kumar, A.; Kumar, P.; Kunori, S.; Kuo, C. M.; Kurt, P.; Kyberd, P.; Kyriakis, A.; Laasanen, A.; Ladygin, V.; Laird, E.; Landsberg, G.; Laszlo, A.; Lawlor, C.; Lazic, D.; Lebeau, M.; Lecomte, P.; Lecoq, P.; Ledovskoy, A.; Lee, S.-W.; Leshev, G.; Lethuillier, M.; Levchuk, L.; Lin, S. W.; Lin, W.; Linn, S.; Lintern, A. L.; Litvine, V.; Litvintsev, D.; Litov, L.; Lobolo, L.; Locci, E.; Lodge, A. B.; Longo, E.; Loukas, D.; Los, S.; Lubinsky, V.; Luckey, P. D.; Lukanin, V.; Lustermann, W.; Lynch, C.; Ma, Y.; Machado, E.; Mahlke-Krueger, H.; Maity, M.; Majumder, G.; Malberti, M.; Malclès, J.; Maletic, D.; Mandjavidze, I.; Mans, J.; Manthos, N.; Maravin, Y.; Marchica, C.; Marinelli, N.; Markou, A.; Markou, C.; Marlow, D.; Markowitz, P.; Marone, M.; Martinez, G.; Mathez, H.; Matveev, V.; Mavrommatis, C.; Maurelli, G.; Mazumdar, K.; Meridiani, P.; Merlo, J. P.; Mermerkaya, H.; Mescheryakov, G.; Mestvirishvili, A.; Mikhailin, V.; Milenovic, P.; Miller, M.; Milleret, G.; Miné, P.; Moeller, A.; Mohammadi-Najafabadi, M.; Mohanty, A. K.; Moissenz, P.

    2009-04-01

    The response of the CMS barrel calorimeter (electromagnetic plus hadronic) to hadrons, electrons and muons over a wide momentum range from 2 to 350 GeV/ c has been measured. To our knowledge, this is the widest range of momenta in which any calorimeter system has been studied. These tests, carried out at the H2 beam-line at CERN, provide a wealth of information, especially at low energies. The analysis of the differences in calorimeter response to charged pions, kaons, protons and antiprotons and a detailed discussion of the underlying phenomena are presented. We also show techniques that apply corrections to the signals from the considerably different electromagnetic (EB) and hadronic (HB) barrel calorimeters in reconstructing the energies of hadrons. Above 5 GeV/ c, these corrections improve the energy resolution of the combined system where the stochastic term equals 84.7±1.6% and the constant term is 7.4±0.8%. The corrected mean response remains constant within 1.3% rms.

  14. A New Four-Barrel Pellet Injection System for the TJ-II Stellarator

    SciTech Connect

    Combs, Stephen Kirk; Foust, Charles R; McGill, James M; Baylor, Larry R; Caughman, John B; Fehling, Dan T; Harris, Jeffrey H; Meitner, Steven J; Rasmussen, David A; McCarthy, K. J.; Chamorro, M.; Garcia, R.; Hildago, C.; Medrano, M.; Unamuno, R.

    2011-01-01

    A new pellet injection system for the TJ-II stellarator has been developed/constructed as part of a collaboration between the Oak Ridge National Laboratory (ORNL) and the Centro de Investigaciones Energ ticas, Medioambientales y Tecnol gicas (CIEMAT). ORNL is providing most of the injector hardware and instrumentation, the pellet diagnostics, and the pellet transport tubes; CIEMAT is responsible for the injector stand/interface to the stellarator, cryogenic refrigerator, vacuum pumps/ballast volumes, gas manifolds, remote operations, plasma diagnostics, and data acquisition. The pellet injector design is an upgraded version of that used for the ORNL injector installed on the Madison Symmetric Torus (MST). It is a four-barrel system equipped with a cryogenic refrigerator for in situ hydrogen pellet formation and a combined mechanical punch/propellant valve system for pellet acceleration (speeds ~100 to 1000 m/s). On TJ-II, it will be used as an active diagnostic and for fueling. To accommodate the plasma experiments planned for TJ-II, pellet sizes significantly smaller than those typically used for the MST application are required. The system will initially be equipped with four different pellet sizes, with the gun barrel bores ranging between ~0.5 to 1.0 mm. The new system is almost complete and is described briefly here, highlighting the new features added since the original MST injector was constructed. Also, the future installation on TJ-II is reviewed.

  15. Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins.

    PubMed

    Gil-Carton, David; Jaakkola, Salla T; Charro, Diego; Peralta, Bibiana; Castaño-Díez, Daniel; Oksanen, Hanna M; Bamford, Dennis H; Abrescia, Nicola G A

    2015-10-01

    Archaeal viruses constitute the least explored niche within the virosphere. Structure-based approaches have revealed close relationships between viruses infecting organisms from different domains of life. Here, using biochemical and cryo-electron microscopy techniques, we solved the structure of euryarchaeal, halophilic, internal membrane-containing Haloarcula hispanica icosahedral virus 2 (HHIV-2). We show that the density of the two major capsid proteins (MCPs) recapitulates vertical single β-barrel proteins and that disulfide bridges stabilize the capsid. Below, ordered density is visible close to the membrane and at the five-fold vertices underneath the host-interacting vertex complex underpinning membrane-protein interactions. The HHIV-2 structure exemplifies the division of conserved architectural elements of a virion, such as the capsid, from those that evolve rapidly due to selective environmental pressure such as host-recognizing structures. We propose that in viruses with two vertical single β-barrel MCPs the vesicle is indispensable, and membrane-protein interactions serve as protein-railings for guiding the assembly. PMID:26320579

  16. Summary of types of precipitation events observed by BARREL during storms.

    NASA Astrophysics Data System (ADS)

    Halford, A. J.; Millan, R. M.; Chakrabarti, S.; Woodger, L. A.; Kavanagh, A. J.

    2015-12-01

    In this poster we summarize the types of storm time precipitation observed by BARREL. One storm will be specifically highlighted which occurred on 26 January 2013 when a solar wind shock hit the Earth. After impact, electromagnetic ion cyclotron (EMIC) waves, observed both on the ground and with the Van Allen Probes, and relativistic electron precipitation (REP) were observed. A few hours later a substorm injection, observed by GOES and LANL, led to 100s keV electron precipitation. Throughout the substorm microbursts were clearly observed. Both during the REP as well as during the substorm precipitation, ULF time scale modulation of the X-rays was observed. This storm period also covered a time period where ~150 keV electron precipitation was observed to correlate well with drift echoes at 300 keV. This last event has not yet been fully explained. We will also present new results from storm periods during the second and third (Swedish) BARREL campaigns. We hope to be able to include results from conjunctions with EISCAT Tromso radar and HiT&MIS, a day time auroral imager, along with the current heliospheric fleet of satellites.

  17. Microsecond acquisition of heterogeneous structure in the folding of a TIM barrel protein

    PubMed Central

    Wu, Ying; Kondrashkina, Elena; Kayatekin, Can; Matthews, C. Robert; Bilsel, Osman

    2008-01-01

    The earliest kinetic folding events for (βα)8 barrels reflect the appearance of off-pathway intermediates. Continuous-flow microchannel mixing methods interfaced to small-angle x-ray scattering (SAXS), circular dichroism (CD), time-resolved Förster resonant energy transfer (trFRET), and time-resolved fluorescence anisotropy (trFLAN) have been used to directly monitor global and specific dimensional properties of the partially folded state in the microsecond time range for a representative (βα)8 barrel protein. Within 150 μs, the α-subunit of Trp synthase (αTS) experiences a global collapse and the partial formation of secondary structure. The time resolution of the folding reaction was enhanced with trFRET and trFLAN to show that, within 30 μs, a distinct and autonomous partially collapsed structure has already formed in the N-terminal and central regions but not in the C-terminal region. A distance distribution analysis of the trFRET data confirmed the presence of a heterogeneous ensemble that persists for several hundreds of microseconds. Ready access to locally folded, stable substructures may be a hallmark of repeat-module proteins and the source of early kinetic traps in these very common motifs. Their folding free-energy landscapes should be elaborated to capture this source of frustration. PMID:18757725

  18. Translocation boost protein-folding efficiency of double-barreled chaperonins.

    PubMed

    Coluzza, Ivan; van der Vies, Saskia M; Frenkel, Daan

    2006-05-15

    Incorrect folding of proteins in living cells may lead to malfunctioning of the cell machinery. To prevent such cellular disasters from happening, all cells contain molecular chaperones that assist nonnative proteins in folding into the correct native structure. One of the most studied chaperone complexes is the GroEL-GroES complex. The GroEL part has a "double-barrel" structure, which consists of two cylindrical chambers joined at the bottom in a symmetrical fashion. The hydrophobic rim of one of the GroEL chambers captures nonnative proteins. The GroES part acts as a lid that temporarily closes the filled chamber during the folding process. Several capture-folding-release cycles are required before the nonnative protein reaches its native state. Here we report molecular simulations that suggest that translocation of the nonnative protein through the equatorial plane of the complex boosts the efficiency of the chaperonin action. If the target protein is correctly folded after translocation, it is released. However, if it is still nonnative, it is likely to remain trapped in the second chamber, which then closes to start a reverse translocation process. This shuttling back and forth continues until the protein is correctly folded. Our model provides a natural explanation for the prevalence of double-barreled chaperonins. Moreover, we argue that internal folding is both more efficient and safer than a scenario where partially refolded proteins escape from the complex before being recaptured.

  19. Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.

    PubMed

    Natt, Navjyot K; Kaur, Harpreet; Raghava, G P S

    2004-07-01

    This article describes a method developed for predicting transmembrane beta-barrel regions in membrane proteins using machine learning techniques: artificial neural network (ANN) and support vector machine (SVM). The ANN used in this study is a feed-forward neural network with a standard back-propagation training algorithm. The accuracy of the ANN-based method improved significantly, from 70.4% to 80.5%, when evolutionary information was added to a single sequence as a multiple sequence alignment obtained from PSI-BLAST. We have also developed an SVM-based method using a primary sequence as input and achieved an accuracy of 77.4%. The SVM model was modified by adding 36 physicochemical parameters to the amino acid sequence information. Finally, ANN- and SVM-based methods were combined to utilize the full potential of both techniques. The accuracy and Matthews correlation coefficient (MCC) value of SVM, ANN, and combined method are 78.5%, 80.5%, and 81.8%, and 0.55, 0.63, and 0.64, respectively. These methods were trained and tested on a nonredundant data set of 16 proteins, and performance was evaluated using "leave one out cross-validation" (LOOCV). Based on this study, we have developed a Web server, TBBPred, for predicting transmembrane beta-barrel regions in proteins (available at http://www.imtech.res.in/raghava/tbbpred).

  20. Optogenetic Patterning of Whisker-Barrel Cortical System in Transgenic Rat Expressing Channelrhodopsin-2

    PubMed Central

    Yokoyama, Yukinobu; Sumiyoshi, Akira; Shibuya, Yuma; Matsuzaka, Yoshiya; Kawashima, Ryuta; Mushiake, Hajime; Ishizuka, Toru; Yawo, Hiromu

    2014-01-01

    The rodent whisker-barrel system has been an ideal model for studying somatosensory representations in the cortex. However, it remains a challenge to experimentally stimulate whiskers with a given pattern under spatiotemporal precision. Recently the optogenetic manipulation of neuronal activity has made possible the analysis of the neuronal network with precise spatiotemporal resolution. Here we identified the selective expression of channelrhodopsin-2 (ChR2), an algal light-driven cation channel, in the large mechanoreceptive neurons in the trigeminal ganglion (TG) as well as their peripheral nerve endings innervating the whisker follicles of a transgenic rat. The spatiotemporal pattern of whisker irradiation thus produced a barrel-cortical response with a specific spatiotemporal pattern as evidenced by electrophysiological and functional MRI (fMRI) studies. Our methods of generating an optogenetic tactile pattern (OTP) can be expected to facilitate studies on how the spatiotemporal pattern of touch is represented in the somatosensory cortex, as Hubel and Wiesel did in the visual cortex. PMID:24695456

  1. Morphology and physiology of excitatory neurons in layer 6b of the somatosensory rat barrel cortex.

    PubMed

    Marx, Manuel; Feldmeyer, Dirk

    2013-12-01

    Neocortical lamina 6B (L6B) is a largely unexplored layer with a very heterogeneous cellular composition. To date, only little is known about L6B neurons on a systematic and quantitative basis. We investigated the morphological and electrophysiological properties of excitatory L6B neurons in the rat somatosensory barrel cortex using whole-cell patch-clamp recordings and simultaneous biocytin fillings. Subsequent histological processing and computer-assisted 3D reconstructions provided the basis for a classification of excitatory L6B neurons according to their structural and functional characteristics. Three distinct clusters of excitatory L6B neurons were identified: (C1) pyramidal neurons with an apical dendrite pointing towards the pial surface, (C2) neurons with a prominent, "apical"-like dendrite not oriented towards the pia, and (C3) multipolar spiny neurons without any preferential dendritic orientation. The second group could be further subdivided into three categories termed inverted, "tangentially" oriented and "horizontally" oriented neurons. Furthermore, based on the axonal domain two subcategories of L6B pyramidal cells were identified that had either a more barrel-column confined or an extended axonal field. The classification of excitatory L6B neurons provided here may serve as a basis for future studies on the structure, function, and synaptic connectivity of L6B neurons.

  2. ATLAS Cloud R&D

    NASA Astrophysics Data System (ADS)

    Panitkin, Sergey; Barreiro Megino, Fernando; Caballero Bejar, Jose; Benjamin, Doug; Di Girolamo, Alessandro; Gable, Ian; Hendrix, Val; Hover, John; Kucharczyk, Katarzyna; Medrano Llamas, Ramon; Love, Peter; Ohman, Henrik; Paterson, Michael; Sobie, Randall; Taylor, Ryan; Walker, Rodney; Zaytsev, Alexander; Atlas Collaboration

    2014-06-01

    The computing model of the ATLAS experiment was designed around the concept of grid computing and, since the start of data taking, this model has proven very successful. However, new cloud computing technologies bring attractive features to improve the operations and elasticity of scientific distributed computing. ATLAS sees grid and cloud computing as complementary technologies that will coexist at different levels of resource abstraction, and two years ago created an R&D working group to investigate the different integration scenarios. The ATLAS Cloud Computing R&D has been able to demonstrate the feasibility of offloading work from grid to cloud sites and, as of today, is able to integrate transparently various cloud resources into the PanDA workload management system. The ATLAS Cloud Computing R&D is operating various PanDA queues on private and public resources and has provided several hundred thousand CPU days to the experiment. As a result, the ATLAS Cloud Computing R&D group has gained a significant insight into the cloud computing landscape and has identified points that still need to be addressed in order to fully utilize this technology. This contribution will explain the cloud integration models that are being evaluated and will discuss ATLAS' learning during the collaboration with leading commercial and academic cloud providers.

  3. The GLAS Standard Data Products Specification-Level 1, Version 9

    NASA Technical Reports Server (NTRS)

    Lee, Jeffrey E.

    2013-01-01

    The Geoscience Laser Altimeter System (GLAS) is the primary instrument for the ICESat (Ice, Cloud and Land Elevation Satellite) laser altimetry mission. ICESat was the benchmark Earth Observing System (EOS) mission for measuring ice sheet mass balance, cloud and aerosol heights, as well as land topography and vegetation characteristics. From 2003 to 2009, the ICESat mission provided multi-year elevation data needed to determine ice sheet mass balance as well as cloud property information, especially for stratospheric clouds common over polar areas. It also provided topography and vegetation data around the globe, in addition to the polar-specific coverage over the Greenland and Antarctic ice sheets.This document defines the Level-1 GLAS standard data products. This document addresses the data flow, interfaces, record and data formats associated with the GLAS Level 1 standard data products. GLAS Level 1 standard data products are composed of Level 1A and Level 1B data products. The term standard data products refers to those EOS instrument data that are routinely generated for public distribution. The National Snow and Ice Data Center (NSDIC) distribute these products. Each data product has a unique Product Identification code assigned by the Senior Project Scientist. GLAS Level 1A and Level 1B Data Products are composed from those Level 0 data that have been reformatted or transformed to corrected and calibrated data in physical units at the full instrument rate and resolution.

  4. Multiple Group Analysis in Multilevel Structural Equation Model Across Level 1 Groups.

    PubMed

    Ryu, Ehri

    2015-01-01

    This article introduces and evaluates a procedure for conducting multiple group analysis in multilevel structural equation model across Level 1 groups (MG1-MSEM; Ryu, 2014). When group membership is at Level 1, multiple group analysis raises two issues that cannot be solved by a simple extension of the standard multiple group analysis in single-level structural equation model. First, the Level 2 data are not independent between Level 1 groups. Second, the standard procedure fails to take into account the dependency between members of different Level 1 groups within the same cluster. The MG1-MSEM approach provides solutions to these problems. In MG1-MSEM, the Level 1 mean structure is necessary to represent the differences between Level 1 groups within clusters. The Level 2 model is the same regardless of Level 1 group membership. A simulation study examined the performance of MUML (Muthén's maximum likelihood) estimation in MG1-MSEM. The MG1-MSEM approach is illustrated for both a multilevel path model and a multilevel factor model using empirical data sets.

  5. Tampa Bay environmental atlas

    SciTech Connect

    Kunneke, J.T.; Palik, T.F.

    1984-12-01

    Biological and water resource data for Tampa Bay were compiled and mapped at a scale of 1:24,000. This atlas consists of (1) composited information overlain on 18 biological and 20 water resource base maps and (2) an accompanying map narrative. Subjects mapped on the water resource maps are contours of the mean middepth specific conductivity which can be converted to salinity; bathymetry, sediments, tidal currents, the freshwater/saltwater interface, dredge spoil disposal sites; locations of industrial and municipal point source discharges, tide stations, and water quality sampling stations. The point source discharge locations show permitted capacity and the water quality sampling stations show 5-year averages for chlorophyll, conductivity, turbidity, temperature, and total nitrogen. The subjects shown on the biological resource maps are clam and oyster beds, shellfish harvest areas, colonial bird nesting sites, manatee habitat, seagrass beds and artificial reefs. Spawning seasons, nursery habitats, and adult habitats are identified for major fish species. The atlas will provide useful information for coastal planning and management in Tampa Bay.

  6. ATLAS DBM Module Qualification

    SciTech Connect

    Soha, Aria; Gorisek, Andrej; Zavrtanik, Marko; Sokhranyi, Grygorii; McGoldrick, Garrin; Cerv, Matevz

    2014-06-18

    This is a technical scope of work (TSW) between the Fermi National Accelerator Laboratory (Fermilab) and the experimenters of Jozef Stefan Institute, CERN, and University of Toronto who have committed to participate in beam tests to be carried out during the 2014 Fermilab Test Beam Facility program. Chemical Vapour Deposition (CVD) diamond has a number of properties that make it attractive for high energy physics detector applications. Its large band-gap (5.5 eV) and large displacement energy (42 eV/atom) make it a material that is inherently radiation tolerant with very low leakage currents and high thermal conductivity. CVD diamond is being investigated by the RD42 Collaboration for use very close to LHC interaction regions, where the most extreme radiation conditions are found. This document builds on that work and proposes a highly spatially segmented diamond based luminosity monitor to complement the time segmented ATLAS Beam Conditions Monitor (BCM) so that when Minimum Bias Trigger Scintillators (MTBS) and LUCID (LUminosity measurement using a Cherenkov Integrating Detector) have difficulty functioning the ATLAS luminosity measurement is not compromised.

  7. Atlas Distributed Analysis Tools

    NASA Astrophysics Data System (ADS)

    de La Hoz, Santiago Gonzalez; Ruiz, Luis March; Liko, Dietrich

    2008-06-01

    The ATLAS production system has been successfully used to run production of simulation data at an unprecedented scale. Up to 10000 jobs were processed in one day. The experiences obtained operating the system on several grid flavours was essential to perform a user analysis using grid resources. First tests of the distributed analysis system were then performed. In the preparation phase data was registered in the LHC File Catalog (LFC) and replicated in external sites. For the main test, few resources were used. All these tests are only a first step towards the validation of the computing model. The ATLAS management computing board decided to integrate the collaboration efforts in distributed analysis in only one project, GANGA. The goal is to test the reconstruction and analysis software in a large scale Data production using Grid flavors in several sites. GANGA allows trivial switching between running test jobs on a local batch system and running large-scale analyses on the Grid; it provides job splitting and merging, and includes automated job monitoring and output retrieval.

  8. A practical fan-beam design and reconstruction algorithm for Active and Passive Computed Tomography of radioactive waste barrels

    NASA Astrophysics Data System (ADS)

    Roy, Tushar; More, M. R.; Ratheesh, Jilju; Sinha, Amar

    2015-09-01

    Active and Passive CT (A&PCT) of waste barrels is mostly carried out in parallel beam configuration due to its relative ease of implementation. This necessitates either using a single detector-source pair and translating the barrel or using multiple detector-source pairs for increasing the scanning speed. Additionally, because the use of bulky HPGe detectors may limit the number of detectors used in both active and passive modes, we propose to use 1″×1″ LaBr3(Ce) scintillators. This paper describes a practical fan-beam reconstruction for A&PCT imaging of waste barrels. A fan beam system model has been computed analytically and reconstruction done using MLEM algorithm. The results are compared with analytical reconstruction.

  9. Changes in chemical composition of a red wine aged in acacia, cherry, chestnut, mulberry, and oak wood barrels.

    PubMed

    De Rosso, Mirko; Panighel, Annarita; Dalla Vedova, Antonio; Stella, Laura; Flamini, Riccardo

    2009-03-11

    Aging in wooden barrels is a process used to stabilize the color and enrich the sensorial characteristics of wine. Many compounds are released from wood into the wine; oxygen permeation through the wood favors formation of new anthocyanin and tannin derivatives. Recently, polyphenols and volatile compounds released from acacia, chestnut, cherry, mulberry, and oak wood used in making barrels for spirits and wine aging were studied. Here, changes in volatile and polyphenolic compositions of a red wine aged for 9 months in acacia, cherry, chestnut, mulberry, and oak barrels are studied. Mulberry showed significant decreases of fruity-note ethyl esters and ethylguaiacol and a great cession of ethylphenol (horsey-odor defect). Cherry promoted the highest polyphenol oxidation, making it less suitable for long aging. LC/ESI-MS(n) showed the relevant presence of cis- and trans-piceatannol in mulberry-aged wine, a phytoalexin with antileukemia and antimelanoma activities.

  10. A Photographic Atlas of Selected Regions of the Milky Way

    NASA Astrophysics Data System (ADS)

    Barnard, Edward Emerson; Orin Dobek, Foreword by Gerald

    2014-08-01

    Foreword Gerald Orin Dobek; Preface from the original Atlas; Introduction from the original Atlas; Bibliography from the original Atlas; Catalogue of 349 dark objects in the sky; Biography of Edward Emerson Barnard.

  11. The Effects of CO2 Injection and Barrel Temperatures on the Physiochemical and Antioxidant Properties of Extruded Cereals

    PubMed Central

    Thin, Thazin; Myat, Lin; Ryu, Gi-Hyung

    2016-01-01

    The effects of CO2 injection and barrel temperatures on the physiochemical and antioxidant properties of extruded cereals (sorghum, barley, oats, and millet) were studied. Extrusion was carried out using a twin-screw extruder at different barrel temperatures (80, 110, and 140°C), CO2 injection (0 and 500 mL/min), screw speed of 200 rpm, and moisture content of 25%. Extrusion significantly increased the total flavonoid content (TFC) of extruded oats, and β-glucan and protein digestibility (PD) of extruded barley and oats. In contrast, there were significant reductions in 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging activity, PD of extruded sorghum and millet, as well as resistant starch (RS) of extruded sorghum and barley, and total phenolic content (TPC) of all extrudates, except extruded millet. At a barrel temperature of 140°C, TPC in extruded barley was significantly increased, and there was also an increase in DPPH and PD in extruded millet with or without CO2 injection. In contrast, at a barrel temperature of 140°C, the TPC of extruded sorghum decreased, TFC of extruded oats decreased, and at a barrel temperature of 110°C, PD of extruded sorghum without CO2 decreased. Some physical properties [expansion ratio (ER), specific length, piece density, color, and water absorption index] of the extrudates were significantly affected by the increase in barrel temperature. The CO2 injection significantly affected some physical properties (ER, specific length, piece density, water solubility index, and water absorption index), TPC, DPPH, β-glucan, and PD. In conclusion, extruded barley and millet had higher potential for making value added cereal-based foods than the other cereals. PMID:27752504

  12. BARREL observations of an ICME-shock impact with the magnetosphere and the resultant radiation belt electron loss

    NASA Astrophysics Data System (ADS)

    Halford, A. J.; McGregor, S. L.; Murphy, K. R.; Millan, R. M.; Hudson, M. K.; Woodger, L. A.; Cattel, C. A.; Breneman, A. W.; Mann, I. R.; Kurth, W. S.; Hospodarsky, G. B.; Gkioulidou, M.; Fennell, J. F.

    2015-04-01

    The Balloon Array for Radiation belt Relativistic Electron Losses (BARREL) mission of opportunity working in tandem with the Van Allen Probes was designed to study the loss of radiation belt electrons to the ionosphere and upper atmosphere. BARREL is also sensitive to X-rays from other sources. During the second BARREL campaign, the Sun produced an X-class flare followed by a solar energetic particle event (SEP) associated with the same active region. Two days later on 9 January 2014, the shock generated by the coronal mass ejection (CME) originating from the active region hits the Earth while BARREL was in a close conjunction with the Van Allen Probes. Time History Events and Macroscale Interactions during Substorms (THEMIS) satellite observed the impact of the interplanetary CME (ICME) shock near the magnetopause, and the Geostationary Operational Environmental Satellites (GOES) were on either side of the BARREL/Van Allen Probe array. The solar interplanetary magnetic field was not ideally oriented to cause a significant geomagnetic storm, but compression from the shock impact led to the loss of radiation belt electrons. We propose that an azimuthal electric field impulse generated by magnetopause compression caused inward electron transport and minimal loss. This process also drove chorus waves, which were responsible for most of the precipitation observed outside the plasmapause. Observations of hiss inside the plasmapause explain the absence of loss at this location. ULF waves were found to be correlated with the structure of the precipitation. We demonstrate how BARREL can monitor precipitation following an ICME-shock impact at Earth in a cradle-to-grave view; from flare, to SEP, to electron precipitation.

  13. Effectiveness of low impact development practices in two urbanized watersheds: retrofitting with rain barrel/cistern and porous pavement.

    PubMed

    Ahiablame, Laurent M; Engel, Bernard A; Chaubey, Indrajeet

    2013-04-15

    The impacts of urbanization on hydrology and water quality can be minimized with the use of low impact development (LID) practices in urban areas. This study assessed the performance of rain barrel/cistern and porous pavement as retrofitting technologies in two urbanized watersheds of 70 and 40 km(2) near Indianapolis, Indiana. Six scenarios consisting of the watershed existing condition, 25% and 50% implementation of rain barrel/cistern and porous pavement, and 25% rain barrel/cistern combined with 25% porous pavement were evaluated using a proposed LID modeling framework and the Long-Term Hydrologic Impact Assessment (L-THIA)-LID model. The model was calibrated for annual runoff from 1991 to 2000, and validated from 2001 to 2010 for the two watersheds. For the calibration period, R(2) and NSE values were greater than 0.60 and 0.50 for annual runoff and streamflow. Baseflow was not calibrated in this study. During the validation period, R(2) and NSE values were greater than 0.50 for runoff and streamflow, and 0.30 for baseflow in the two watersheds. The various application levels of barrel/cistern and porous pavement resulted in 2-12% reduction in runoff and pollutant loads for the two watersheds. Baseflow loads slightly increased with increase in baseflow by more than 1%. However, reduction in runoff led to reduction in total streamflow and associated pollutant loads by 1-9% in the watersheds. The results also indicate that the application of 50% rain barrel/cistern, 50% porous pavement and 25% rain barrel/cistern combined with 25% porous pavement are good retrofitting options in these watersheds. The L-THIA-LID model can be used to inform management and decision-making for implementation of LID practices at the watershed scale.

  14. Simultaneous visualization of cortical barrels and horseradish peroxidase-injected layer 5b vibrissa neurones in the rat.

    PubMed Central

    Ito, M

    1992-01-01

    1. Using diaminobenzidine (DAB) as a chromagen, horseradish peroxidase-injected neurones and cytochrome oxidase-stained barrels were visualized simultaneously in the rat vibrissa cortex. Neurones were initially tested during extracellular recording for responses to whisker deflections. This was followed by intracellular injection of the soma with horseradish peroxidase (HRP) and histological processing to visualize the HRP-stained neurone in an incubation solution which contained, in addition to DAB, cytochrome C for cytochrome oxidase (CO) reaction of the barrels. 2. Recording and intracellular staining were made in layer 5b under urethane anaesthesia. CO-stained barrels were observed in layer 4. Physiologically and morphologically characterized neurones were mostly large pyramidal neurones that responded to more than one whisker and displayed transient-type responses. 3. In tangential sections, the apical dendrite of the HRP-filled neurone was followed from the soma level upward as it ascended through the barrelfield in layer 4. The cross-section of the apical dendrite was found in the periphery of the CO-stained barrel. Using the apical dendrite as a guide, the basal dendritic field of the layer 5b pyramidal neurone was aligned on the pattern of layer 4 barrels. The soma was seen to project basal dendrites in all directions, involving one or two neighbouring barrels/columns. 4. In sixteen neurones examined in tangential sections, a complete spatial tuning map constructed by measuring sensitivity of the neurone to different whiskers could be compared to the basal dendritic field in relation to the pattern of overlying layer 4 barrels. The mean receptive field size in terms of the number of effective whiskers was 5.8 whereas the mean dendritic field size in terms of the number of barrels/columns involved was 2.2. In addition to the well-documented role of intracortical connectivity in elaboration of multi-whisker receptor fields in the cortical neurones, the role

  15. National Atlas of the United States Maps

    USGS Publications Warehouse

    ,

    2001-01-01

    The 'National Atlas of the United States of America?', published by the U.S. Geological Survey (USGS) in 1970, is out of print, but many of its maps can be purchased separately. Maps that span facing pages in the atlas are printed on one sheet. Maps dated after 1970 and before 1997 are either revisions of original atlas maps or new maps published in the original atlas format. The USGS and its partners in government and industry began work on a new 'National Atlas' in 1997. Though most new atlas products are designed for the World Wide Web, we are continuing our tradition of printing high-quality maps of America. In 1998, the first completely redesigned maps of the 'National Atlas of the United States?' were published.

  16. Anti-Atlas Mountains, Morocco

    NASA Technical Reports Server (NTRS)

    2002-01-01

    The Anti-Atlas Mountains of northern Africa and the nearby Atlas mountains were created by the prolonged collision of the African and Eurasian tectonic plates, beginning about 80 million years ago. Massive sandstone and limestone layers have been crumpled and uplifted more than 4,000 meters in the High Atlas and to lower elevations in the Anti-Atlas. Between more continuous major fold structures, such as the Jbel Ouarkziz in the southwestern Anti-Atlas, tighter secondary folds (arrow) have developed. Earlier, the supercontinent of Pangea rifted apart to form precursors to the Mediterranean and the Atlantic Ocean (Beauchamp and others, 1996). In those seas sands, clays, limey sediments, and evaporite layers (gypsum, rock salt) were deposited. Later, during the mountain-building plate collision, the gypsum layers flowed under the pressure and provided a slippery surface on which overlying rigid rocks could glide (Burkhard, 2001). The broad, open style of folds seen in this view is common where evaporites are involved in the deformation. Other examples can be found in the Southern Zagros of Iran and the Sierra Madre Oriental of Mexico. Information Sources: Beauchamp, W., Barazangi, M., Demnati, A., and El Alji, M., 1996, Intracontinental rifting and inversion: Missour Basin and Atlas Mountains, Morocco: Tulsa, American Association of Petroleum Geologists Bulletin, v. 80, No. 9, p. 1459-1482. Burkhard, Martin, 2001, Tectonics of the Anti-Atlas of Morocco -- Thin-skin/thick-skin relationships in an atypical foreland fold belt. University of Neuchatel, Switzerland: http://www-geol.unine.ch/Structural/Antiatlas.html (accessed 1/29/02). STS108-711-25 was taken in December, 2001 by the crew of Space Shuttle mission 108 using a Hasselblad camera with 250-mm lens. The image is provided by the Earth Sciences and Image Analysis Laboratory at Johnson Space Center. Additional images taken by astronauts and cosmonauts can be viewed at the NASA-JSC Gateway to Astronaut Photography

  17. BOREAS RSS-14 Level-1a GOES-8 Visible, IR and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Newcomer, Jeffrey A.; Faysash, David; Cooper, Harry J.; Smith, Eric A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed several GOES-7 and GOES-8 image data sets that covered the BOREAS study region. The level-1a GOES-8 images were created by BORIS personnel from the level-1 images delivered by FSU personnel. The data cover 14-Jul-1995 to 21-Sep-1995 and 12-Feb-1996 to 03-Oct-1996. The data start out as three bands with 8-bit pixel values and end up as five bands with 10-bit pixel values. No major problems with the data have been identified. The differences between the level-1 and level-1a GOES-8 data are the formatting and packaging of the data. The images missing from the temporal series of level-1 GOES-8 images were zero-filled by BORIS staff to create files consistent in size and format. In addition, BORIS staff packaged all the images of a given type from a given day into a single file, removed the header information from the individual level-1 files, and placed it into a single descriptive ASCII header file. The data are contained in binary image format files. Due to the large size of the images, the level-1a GOES-8 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1a GOES-8 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  18. Light yield of Kuraray SCSF-78MJ scintillating fibers for the Gluex barrel calorimeter

    NASA Astrophysics Data System (ADS)

    Beattie, T. D.; Fischer, A. P.; Krueger, S. T.; Lolos, G. J.; Papandreou, Z.; Plummer, E. L.; Semenov, A. Yu.; Semenova, I. A.; Sichello, L. M.; Teigrob, L. A.; Smith, E. S.

    2014-12-01

    Over three quarters of a million 1-mm-diameter 4-m-long Kuraray double-clad SCSF-78MJ (blue-green) scintillating fibers have been used in the construction of the GlueX electromagnetic barrel calorimeter for the Hall D experimental program at Jefferson Lab. The quality of a random sample of 4750 of these fibers was evaluated by exciting the fibers at their mid point using a 90Sr source in order to determine the light yield using a calibrated vacuum photomultiplier as the photosensor. A novel methodology was developed to extract the number of photoelectrons detected for measurements where individual photoelectron peaks are not discernible. The average number of photoelectrons from this sample of fibers was 9.17±0.6 at a source distance of 200 cm from the PMT.

  19. Understanding the importance of protein structure to nature's routes for divergent evolution in TIM barrel enzymes.

    PubMed

    Wise, Eric L; Rayment, Ivan

    2004-03-01

    It is widely agreed that new enzymes evolve from existing ones through the duplication of genes encoding existing enzymes followed by sequence divergence. While evolution is an inherently random process, studies of divergently related enzymes have shown that the evolution of new enzymes follows one of three general routes in which the substrate specificity, reaction mechanism, or active site architecture of the progenitor enzyme is reused in the new enzyme. Recent developments in structural biology relating to divergently related (beta/alpha)8 enzymes have brought new insight into these processes and have revealed that conserved structural elements play an important role in divergent evolution. These studies have shown that, although evolution occurs as a series of random mutations, stable folds such as the (beta/alpha)8 barrel and structural features of the active sites of enzymes are frequently reused in evolution and adapted for new catalytic purposes.

  20. Detailed Surface Analysis Of Incremental Centrifugal Barrel Polishing (CBP) Of Single-Crystal Niobium Samples

    SciTech Connect

    Palczewski, Ari D.; Tian, Hui; Trofimova, Olga; Reece, Charles E.

    2011-07-01

    We performed Centrifugal Barrel Polishing (CBP) on single crystal niobium samples/coupons housed in a stainless steel sample holder following the polishing recipe developed at Fermi Lab (FNAL) in 2011 \\cite{C. A. Cooper 2011}. Post CBP, the sample coupons were analyzed for surface roughness, crystal composition and structure, and particle contamination. Following the initial analysis each coupon was high pressure rinsed (HRP) and analyzed for the effectiveness of contamination removal. We were able to obtain the mirror like surface finish after the final stage of tumbling, although some defects and embedded particles remained. In addition, standard HPR appears to have little effect on removing embedded particles which remain after each tumbling step, although final polishing media removal was partially affected by standard/extended HPR.

  1. Fixing mechanism for a wireline core barrel of core drilling equipment

    SciTech Connect

    Nenkov, N.D.; Petrov, I.B.; Peev, S.P.

    1987-05-12

    This patent describes a wireline mechanism for removing a core barrel containing a core from within a hollow drill string carrying a hollow drill crown cutter on its lower end while the drill string is in position in the earth. The mechanism comprises a cylindrical fixer adapted to be mounted within the drill string coaxially thereof. A cap for attachment to a flexible elongated core-removing member is secured to the upper end of the fixer, a cylindrical hollow body is adapted to be mounted within the drill string coaxially thereof and generally below the fixer. A lower portion of the fixer is adapted to be telescoped within the upper portion of the cylindrical hollow body, a longitudinally extending stopper bar is connected to the upper part of the cylindrical hollow body, a locking bar and a nut connect the fixer to the lower part of the cylindrical hollow body.

  2. A Pd8 Tetrafacial Molecular Barrel as Carrier for Water Insoluble Fluorophore.

    PubMed

    Roy, Bijan; Ghosh, Aloke Kumar; Srivastava, Shubhi; D'Silva, Patrick; Mukherjee, Partha Sarathi

    2015-09-23

    A new carbazole-based tetraimidazole ligand 1,3,6,8-tetra(1H-imidazol-1-yl)-9-methyl-9H-carbazole (L) has been synthesized. The unsymmetrical nature of L as well as the rotational freedom of imidazole donor moieties around C-N bond make it a special building unit, which upon treatment with cis-(tmeda)Pd(NO3)2 produced an unprecedented single linkage-isomeric Pd8 tetrafacial molecular nanobarrel (PSMBR-1) [tmeda = N,N,N',N'-tetramethylethane-1,2-diamine]. Unlike closed architectures, open barrel architecture of water-soluble PSMBR-1 makes it an ideal host for some water insoluble polyaromatic hydrocarbons in aqueous medium; one such inclusion complex coronene⊂PSMBR-1 was characterized by X-ray diffraction study. Moreover, the potential application of PSMBR-1 as carrier in aqueous medium for the transportation of water insoluble fluorophore (perylene) for live cell imaging is explored.

  3. OPTIMIZING CENTRIFUGAL BARREL POLISHING FOR MIRROR FINISH SRF CAVITY AND RF TESTS AT JEFFERSON LAB

    SciTech Connect

    Ari Palczewski, Rongli Geng, Hui Tian

    2012-07-01

    We performed Centrifugal Barrel Polishing (CBP) on a 1.3 GHz fine grain TESLA single cell cavity and 1.5 GHz fine grain CEBAF high gradient superconducting radio frequency (SRF) single cell cavity following a modified recipe originally developed at Fermi National Accelerator Lab (FNAL). We were able to obtain a mirror like surface similar to that obtained at FNAL, while reducing the number of CBP steps and total processing time. This paper will discuss the change in surface and subsequent cavity performance post CBP, after a 800 C bake (no pre-bake chemistry) and minimal controlled electro-polishing (10 micron). In addition to Q vs. E{sub ACC} thermometry mapping with preheating characteristics and optical inspection of the cavity after CBP will also be shown.

  4. Performance of the prototype module of the GlueX electromagnetic barrel calorimeter

    SciTech Connect

    Leverington, Blake; Lolos, George; Papandreou, Zisis; Hakobyan, Rafael; Huber, Garth; Janzen, Kathryn; Semenov, Andrei; Scott, Eric; Shepherd, Matthew; Carman, Daniel; Lawrence, David; Smith, Elton; Taylor, Simon; Wolin, Elliott; Klein, Franz; Santoro, Joseph; Sober, Daniel; Kourkoumeli, Christina

    2008-11-01

    A photon beam test of the 4 m long prototype lead/scintillating-fibre module for the GlueX electromagnetic barrel calorimeter was carried out in Hall B at the Thomas Jefferson National Accelerator Facility with the objective of measuring the energy and timing resolutions of the module as well as the number of photoelectrons generated. Data were collected over an energy range of 150 - â 650 MeV at multiple positions and angles along the module. Details of the analysis at the centre of and perpendicular to the module are shown herein; the results are View the MathML source, View the MathML source ps, and 660 photoelectrons for 1 GeV at each end of the module.

  5. Repair of Erosion Defects in Gun Barrels by Direct Laser Deposition

    NASA Astrophysics Data System (ADS)

    Nowotny, Steffen; Spatzier, Joerg; Kubisch, Frank; Scharek, Siegfried; Ortner, Jens; Beyer, Eckhard

    2012-12-01

    In recent years the development of functional carbide coatings follows the trend to use composite powders with fine grained hard particles. In addition to thermal spraying, laser cladding is a suitable surface technology in particular for dynamically loaded components, and it is widely used for the manufacturing of coatings as well as complex 3D structures. The paper presents an application addressing the repair of erosion defects in large gun barrels using a novel internal diameter laser cladding head. The most promising material systems are TiC- and VC-based metal-matrix composites. Samples were evaluated in a special erosion test that emulates realistic load conditions. In this test, the materials are exposed to extreme stresses by temperature and pressure shocks, a very reactive atmosphere and erosive particles. As result, TiC-based coatings showed the best performance, and they are applicable for both repair and surface protection of inner surfaces of components and tools.

  6. Suicidal shotgun wound employing a shotgun barrel, a shotgun shell, and a BB.

    PubMed

    Linert, Brian; Regnier, Janis; Doyle, Barrett W; Prahlow, Joseph A

    2010-03-01

    A vast majority of firearms-related suicides involve the conventional use of a properly functioning, intact firearm. Occasionally, forensic investigators encounter a case wherein the firearm suicide victim employs some form of unconventional use of a weapon, or utilizes an unusual weapon type. In this case report, the authors present an unusual case in which a man committed suicide by using a shotgun shell, a shotgun barrel (separate from the rest of the gun), and a BB. Some confusion as to the cause and manner of death was present during the initial scene investigation. Examination at autopsy revealed the cause of death to be a shotgun wound of the chest and prompted further scene investigation. Therefore, this case serves as another example of the importance of cooperation between scene investigators and forensic pathologists when investigating a death. A review of suicidal firearm cases using unconventional means and/or firearms is presented.

  7. Twenty barrel in situ pipe gun type solid hydrogen pellet injector for the Large Helical Device

    NASA Astrophysics Data System (ADS)

    Sakamoto, Ryuichi; Motojima, Gen; Hayashi, Hiromi; Inoue, Tomoyuki; Ito, Yasuhiko; Ogawa, Hideki; Takami, Shigeyuki; Yokota, Mitsuhiro; Yamada, Hiroshi

    2013-08-01

    A 20 barrel solid hydrogen pellet injector, which is able to inject 20 cylindrical pellets with a diameter and length of between 3.0 and 3.8 mm at the velocity of 1200 m/s, has been developed for the purpose of direct core fueling in LHD (Large Helical Device). The in situ pipe gun concept with the use of compact cryo-coolers enables stable operation as a fundamental facility in plasma experiments. The combination of the two types of pellet injection timing control modes, i.e., pre-programing mode and real-time control mode, allows the build-up and sustainment of high density plasma around the density limit. The pellet injector has demonstrated stable operation characteristics during the past three years of LHD experiments.

  8. Twenty barrel in situ pipe gun type solid hydrogen pellet injector for the Large Helical Device.

    PubMed

    Sakamoto, Ryuichi; Motojima, Gen; Hayashi, Hiromi; Inoue, Tomoyuki; Ito, Yasuhiko; Ogawa, Hideki; Takami, Shigeyuki; Yokota, Mitsuhiro; Yamada, Hiroshi

    2013-08-01

    A 20 barrel solid hydrogen pellet injector, which is able to inject 20 cylindrical pellets with a diameter and length of between 3.0 and 3.8 mm at the velocity of 1200 m/s, has been developed for the purpose of direct core fueling in LHD (Large Helical Device). The in situ pipe gun concept with the use of compact cryo-coolers enables stable operation as a fundamental facility in plasma experiments. The combination of the two types of pellet injection timing control modes, i.e., pre-programing mode and real-time control mode, allows the build-up and sustainment of high density plasma around the density limit. The pellet injector has demonstrated stable operation characteristics during the past three years of LHD experiments.

  9. A growing toolbox of techniques for studying β-barrel outer membrane protein folding and biogenesis

    PubMed Central

    Horne, Jim E.; Radford, Sheena E.

    2016-01-01

    Great strides into understanding protein folding have been made since the seminal work of Anfinsen over 40 years ago, but progress in the study of membrane protein folding has lagged behind that of their water soluble counterparts. Researchers in these fields continue to turn to more advanced techniques such as NMR, mass spectrometry, molecular dynamics (MD) and single molecule methods to interrogate how proteins fold. Our understanding of β-barrel outer membrane protein (OMP) folding has benefited from these advances in the last decade. This class of proteins must traverse the periplasm and then insert into an asymmetric lipid membrane in the absence of a chemical energy source. In this review we discuss old, new and emerging techniques used to examine the process of OMP folding and biogenesis in vitro and describe some of the insights and new questions these techniques have revealed. PMID:27284045

  10. Light yield of Kuraray SCSF-78MJ scintillating fibers for the Gluex barrel calorimeter

    SciTech Connect

    Beattie, T D; Fischer, A P; Krueger, S T; Lolos, G J; Papandreou, Z; Plummer, E L; Semenov, A Yu; Semenova, I A; Sichello, L M; Teigro, L A; Smith, E S

    2014-09-01

    Over three quarters of a million 1-mm-diameter 4-m-long Kuraray double-clad SCSF-78MJ (blue-green) scintillating fibers have been used in the construction of the GlueX electromagnetic barrel calorimeter for the Hall D experimental program at Jefferson Lab. The quality of a random sample of 4,750 of these fibers was evaluated by exciting the fibers at their mid point using a 90Sr source in order to determine the light yield using a calibrated vacuum photomultiplier as the photosensor. A novel methodology was developed to extract the number of photoelectrons detected for measurements where individual photoelectron peaks are not discernible. The average number of photoelectrons from this sample of fibers was 9.17±0.6 at a source distance of 200 cm from the PMT.

  11. Sensory deprivation alters aggrecan and perineuronal net expression in the mouse barrel cortex.

    PubMed

    McRae, Paulette A; Rocco, Mary M; Kelly, Gail; Brumberg, Joshua C; Matthews, Russell T

    2007-05-16

    An important role for the neural extracellular matrix in modulating cortical activity-dependent synaptic plasticity has been established by a number of recent studies. However, identification of the critical molecular components of the neural matrix that mediate these processes is far from complete. Of particular interest is the perineuronal net (PN), an extracellular matrix component found surrounding the cell body and proximal neurites of a subset of neurons. Because of the apposition of the PN to synapses and expression of this structure coincident with the close of the critical period, it has been hypothesized that nets could play uniquely important roles in synapse stabilization and maturation. Interestingly, previous work has also shown that expression of PNs is dependent on appropriate sensory stimulation in the visual system. Here, we investigated whether PNs in the mouse barrel cortex are expressed in an activity-dependent manner by manipulating sensory input through whisker trimming. Importantly, this manipulation did not lead to a global loss of PNs but instead led to a specific decrease in PNs, detected with the antibody Cat-315, in layer IV of the barrel cortex. In addition, we identified a key activity-regulated component of PNs is the proteoglycan aggrecan. We also demonstrate that these Cat-315-positive neurons virtually all also express parvalbumin. Together, these data are in support of an important role for aggrecan in the activity-dependent formation of PNs on parvalbumin-expressing cells and suggest a role for expression of these nets in regulating the close of the critical period.

  12. Thalamocortical control of feed-forward inhibition in awake somatosensory 'barrel' cortex.

    PubMed Central

    Swadlow, Harvey A

    2002-01-01

    Intracortical inhibition plays a role in shaping sensory cortical receptive fields and is mediated by both feed-forward and feedback mechanisms. Feed-forward inhibition is the faster of the two processes, being generated by inhibitory interneurons driven by monosynaptic thalamocortical (TC) input. In principle, feed-forward inhibition can prevent targeted cortical neurons from ever reaching threshold when TC input is weak. To do so, however, inhibitory interneurons must respond to TC input at low thresholds and generate spikes very quickly. A powerful feed-forward inhibition would sharpen the tuning characteristics of targeted cortical neurons, and interneurons with sensitive and broadly tuned receptive fields could mediate this process. Suspected inhibitory interneurons (SINs) with precisely these properties are found in layer 4 of the somatosensory (S1) 'barrel' cortex of rodents and rabbits. These interneurons lack the directional selectivity seen in most cortical spiny neurons and in ventrobasal TC afferents, but are much more sensitive than cortical spiny neurons to low-amplitude whisker displacements. This paper is concerned with the activation of S1 SINs by TC impulses, and with the consequences of this activation. Multiple TC neurons and multiple S1 SINs were simultaneously studied in awake rabbits, and cross-correlation methods were used to examine functional connectivity. The results demonstrate a potent, temporally precise, dynamic and highly convergent/divergent functional input from ventrobasal TC neurons to SINs of the topographically aligned S1 barrel. Whereas the extensive pooling of convergent TC inputs onto SINs generates sensitive and broadly tuned inhibitory receptive fields, the potent TC divergence onto many SINs generates sharply synchronous activity among these elements. This TC feed-forward inhibitory network is well suited to provide a fast, potent, sensitive and broadly tuned inhibition of targeted spiny neurons that will suppress spike

  13. Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks

    PubMed Central

    Vijayabaskar, M. S.; Vishveshwara, Saraswathi

    2012-01-01

    There are many well-known examples of proteins with low sequence similarity, adopting the same structural fold. This aspect of sequence-structure relationship has been extensively studied both experimentally and theoretically, however with limited success. Most of the studies consider remote homology or “sequence conservation” as the basis for their understanding. Recently “interaction energy” based network formalism (Protein Energy Networks (PENs)) was developed to understand the determinants of protein structures. In this paper we have used these PENs to investigate the common non-covalent interactions and their collective features which stabilize the TIM barrel fold. We have also developed a method of aligning PENs in order to understand the spatial conservation of interactions in the fold. We have identified key common interactions responsible for the conservation of the TIM fold, despite high sequence dissimilarity. For instance, the central beta barrel of the TIM fold is stabilized by long-range high energy electrostatic interactions and low-energy contiguous vdW interactions in certain families. The other interfaces like the helix-sheet or the helix-helix seem to be devoid of any high energy conserved interactions. Conserved interactions in the loop regions around the catalytic site of the TIM fold have also been identified, pointing out their significance in both structural and functional evolution. Based on these investigations, we have developed a novel network based phylogenetic analysis for remote homologues, which can perform better than sequence based phylogeny. Such an analysis is more meaningful from both structural and functional evolutionary perspective. We believe that the information obtained through the “interaction conservation” viewpoint and the subsequently developed method of structure network alignment, can shed new light in the fields of fold organization and de novo computational protein design. PMID:22615547

  14. Material wear and failure mode analysis of breakfast cereal extruder barrels and screw elements

    NASA Astrophysics Data System (ADS)

    Mastio, Michael Joseph, Jr.

    2005-11-01

    Nearly seventy-five years ago, the single screw extruder was introduced as a means to produce metal products. Shortly after that, the extruder found its way into the plastics industry. Today much of the world's polymer industry utilizes extruders to produce items such as soda bottles, PVC piping, and toy figurines. Given the significant economical advantages of extruders over conventional batch flow systems, extruders have also migrated into the food industry. Food applications include the meat, pet food, and cereal industries to name just a few. Cereal manufacturers utilize extruders to produce various forms of Ready-to-Eat (RTE) cereals. These cereals are made from grains such as rice, oats, wheat, and corn. The food industry has been incorrectly viewed as an extruder application requiring only minimal energy control and performance capability. This misconception has resulted in very little research in the area of material wear and failure mode analysis of breakfast cereal extruders. Breakfast cereal extruder barrels and individual screw elements are subjected to the extreme pressures and temperatures required to shear and cook the cereal ingredients, resulting in excessive material wear and catastrophic failure of these components. Therefore, this project focuses on the material wear and failure mode analysis of breakfast cereal extruder barrels and screw elements, modeled as a Discrete Time Markov Chain (DTMC) process in which historical data is used to predict future failures. Such predictive analysis will yield cost savings opportunities by providing insight into extruder maintenance scheduling and interchangeability of screw elements. In this DTMC wear analysis, four states of wear are defined and a probability transition matrix is determined based upon 24,041 hours of operational data. This probability transition matrix is used to predict when an extruder component will move to the next state of wear and/or failure. This information can be used to determine

  15. ATLAS tile calorimeter data preparation for LHC first beam data taking and commissioning data

    NASA Astrophysics Data System (ADS)

    Fiorini, Luca; Tile Calorimeter, Atlas

    2010-04-01

    The Tile Calorimeter (TileCal) is the barrel hadronic calorimeter of the ATLAS experiment presently in an advanced state of commissioning with cosmic and single beam data at the LHC collider. The complexity of the detector, the number of electronics channels and the high rate of acquired events requires a systematic strategy of the System Preparation for the Data Taking. This is done through a precise calibration of the detector, prompt update of the Database reconstruction constants, validation of the Data Processing and assessment of quality of the data both with calibration signals as well as data obtained with cosmic muons and the first LHC beam. This article will present the developed strategies and tools to calibrate the calorimeter and to monitor the variations of the extracted calibration constants as a function of time; the present plan and future upgrades to deploy and update the detector constants used in reconstruction; the techniques employed to validate the reconstruction software; the set of tools of the present TileCal data quality system and its integration in ATLAS online and offline frameworks

  16. Web System for Data Quality Assessment of Tile Calorimeter During the ATLAS Operation

    NASA Astrophysics Data System (ADS)

    Maidantchik, C.; Ferreira, F.; Grael, F.; Sivolella, A.; Balabram, L.; ATLAS TILE Calorimeter Community

    2011-12-01

    TileCal, the barrel hadronic calorimeter of the ATLAS experiment, gathers almost about 10,000 electronic channels. The supervision of the detector behavior is very important in order to ensure proper operation. Collaborators perform analysis over reconstructed data of calibration runs for giving detailed considerations about the equipment status. During the commissioning period, our group has developed seven web systems to support the data quality (DQ) assessment task. Each system covers a part of the process by providing information on the latest runs, displaying the DQ status from the monitoring framework, giving details about power supplies operation, presenting the generated plots and storing the validation outcomes, assisting to write logbook entries, creating and submitting the bad channels list to the conditions database and publishing the equipment performance history. The ATLAS operation increases amount of data that are retrieved, processed and stored by the web systems. In order to accomplish the new requirements, an optimized data model was designed to reduce the number of needed queries. The web systems were reassembled in a unique system in order to provide an integrated view of the validating process. The server load was minimized by using asynchronous requests from the browser.

  17. The Resistive Plate Chambers of the ATLAS experiment:. performance studies on Calibration Stream

    NASA Astrophysics Data System (ADS)

    Mazzaferro, Luca

    2012-08-01

    ATLAS (A Toroidal LHC ApparatuS) is one of the four experiments installed on the hadron-hadron collider LHC at CERN. It is a general purpose experiment, with a physics program which spans from the search for the Higgs Boson to the search of physics Beyond the Standard Model (BSM). An integrated luminosity of about 5 fb-1 is expected to be reached by the end of 2011. The Resistive Plate Chambers, installed in the barrel region, are used to provide the first muon level trigger, and cover an area of 16000 m2, readout by about 350000 electronic channels. To ensure optimal trigger performance, the RPC operational parameters like cluster size, efficiency and spatial resolution are constantly monitored. In order to achieve the desired precision, the data used for the analysis are extracted directly from the second level of the trigger, hence assuring very high statistics. This dedicated event stream, called Calibration Stream, is sent automatically to the RPC Calibration Center in Naples. Here the analysis is performed using an automatic tool tightly integrated in the ATLAS GRID environment, the Local Calibration Data Splitter (LCDS), which configures and manages all the operations required by the analysis (e.g. software environment initialization, grid jobs configuration and submission, data saving and retrieval, etc). The monitored RPC operational parameters, the performance analysis and the LCDS will be presented.

  18. Cassini Tour Atlas Automated Generation

    NASA Technical Reports Server (NTRS)

    Grazier, Kevin R.; Roumeliotis, Chris; Lange, Robert D.

    2011-01-01

    During the Cassini spacecraft s cruise phase and nominal mission, the Cassini Science Planning Team developed and maintained an online database of geometric and timing information called the Cassini Tour Atlas. The Tour Atlas consisted of several hundreds of megabytes of EVENTS mission planning software outputs, tables, plots, and images used by mission scientists for observation planning. Each time the nominal mission trajectory was altered or tweaked, a new Tour Atlas had to be regenerated manually. In the early phases of Cassini s Equinox Mission planning, an a priori estimate suggested that mission tour designers would develop approximately 30 candidate tours within a short period of time. So that Cassini scientists could properly analyze the science opportunities in each candidate tour quickly and thoroughly so that the optimal series of orbits for science return could be selected, a separate Tour Atlas was required for each trajectory. The task of manually generating the number of trajectory analyses in the allotted time would have been impossible, so the entire task was automated using code written in five different programming languages. This software automates the generation of the Cassini Tour Atlas database. It performs with one UNIX command what previously took a day or two of human labor.

  19. Chandra Galaxy Atlas

    NASA Astrophysics Data System (ADS)

    Kim, Dong-Woo; Mossman, Amy; Fruscione, Antonella; Anderson, Craig; Morgan, Doug; Burke, Douglas J.; O'Sullivan, E. J; Fabbiano, Giuseppina; Lauer, Jennifer; McCollough, Mike

    2014-06-01

    The hot ISM in early type galaxies plays a crucial role for understanding their formation and evolution. Structural features of the hot ISM identified by Chandra (including jets, cavities, cold fronts, filaments and tails) point to key evolutionary mechanisms, e.g., AGN feedback, merging history, accretion/stripping and star formation and its quenching. In our new project, Chandra Galaxy Atlas, we will systematically analyze the archival Chandra data of 137 ETGs to study the hot ISM. Taking full advantage of the Chandra capabilities, we will derive uniform data products of spatially resolved dataset with additional spectral information. We will make these products publicly available and use them for our focused science goals.

  20. Atlas of Nuclear Isomers

    SciTech Connect

    Jain, Ashok Kumar; Maheshwari, Bhoomika; Garg, Swati; Patial, Monika; Singh, Balraj

    2015-09-15

    We present an atlas of nuclear isomers containing the experimental data for the isomers with a half-life ≥ 10 ns together with their various properties such as excitation-energy, half-life, decay mode(s), spin-parity, energies and multipolarities of emitted gamma transitions, etc. The ENSDF database complemented by the XUNDL database has been extensively used in extracting the relevant data. Recent literature from primary nuclear physics journals, and the NSR bibliographic database have been searched to ensure that the compiled data Table is as complete and current as possible. The data from NUBASE-12 have also been checked for completeness, but as far as possible original references have been cited. Many interesting systematic features of nuclear isomers emerge, some of them new; these are discussed and presented in various graphs and figures. The cutoff date for the extraction of data from the literature is August 15, 2015.

  1. Consumer Energy Atlas

    SciTech Connect

    Not Available

    1980-06-01

    This first edition of the Atlas provides, in reference form, a central source of information to consumers on key contacts concerned with energy in the US. Energy consumers need information appropriate to local climates and characteristics - best provided by state and local governments. The Department of Energy recognizes the authority of state and local governments to manage energy programs on their own. Therefore, emphasis has been given to government organizations on both the national and state level that influence, formulate, or administer policies affecting energy production, distribution, and use, or that provide information of interest to consumers and non-specialists. In addition, hundreds of non-government energy-related membership organizations, industry trade associations, and energy publications are included.

  2. Criteria for level 1 and level 2 trauma codes: Are pelvic ring injuries undertriaged?

    PubMed Central

    Haws, Brittany E; Wuertzer, Scott; Raffield, Laura; Lenchik, Leon; Miller, Anna N

    2016-01-01

    AIM To determine the association of unstable pelvic ring injuries with trauma code status. METHODS A retrospective review of all pelvic ring injuries at a single academic center from July 2010 to June 2013 was performed. The trauma registry was used to identify level 1 and level 2 trauma codes for each injury. The computed tomography scans in all patients were classified as stable or unstable using the Abbreviated Injury Scale. Pelvic injury classifications in level 1 and level 2 groups were compared. Patient disposition at discharge in level 1 and level 2 groups were also compared. RESULTS There were 108 level 1 and 130 level 2 blunt trauma admissions. In the level 1 group, 67% of pelvic injuries were classified as stable fracture patterns and 33% were classified as unstable. In the level 2 group, 62% of pelvic injuries were classified as stable fracture patterns and 38% were classified as unstable. level 1 trauma code was not associated with odds of having an unstable fracture pattern (OR = 0.83, 95%CI: 0.48-1.41, P = 0.485). In the level 1 group with unstable pelvic injuries, 33% were discharged to home, 36% to a rehabilitation facility, and 32% died. In the level 2 group with unstable pelvic injuries, 65% were discharged to home, 31% to a rehabilitation facility, and 4% died. For those with unstable pelvic fractures (n = 85), assignment of a level 2 trauma code was associated with reduced odds of death (OR = 0.07, 95%CI: 0.01-0.35, P = 0.001) as compared to being discharged to home. CONCLUSION Trauma code level assignment is not correlated with severity of pelvic injury. Because an unstable pelvis can lead to hemodynamic instability, these injuries may be undertriaged.

  3. Criteria for level 1 and level 2 trauma codes: Are pelvic ring injuries undertriaged?

    PubMed Central

    Haws, Brittany E; Wuertzer, Scott; Raffield, Laura; Lenchik, Leon; Miller, Anna N

    2016-01-01

    AIM To determine the association of unstable pelvic ring injuries with trauma code status. METHODS A retrospective review of all pelvic ring injuries at a single academic center from July 2010 to June 2013 was performed. The trauma registry was used to identify level 1 and level 2 trauma codes for each injury. The computed tomography scans in all patients were classified as stable or unstable using the Abbreviated Injury Scale. Pelvic injury classifications in level 1 and level 2 groups were compared. Patient disposition at discharge in level 1 and level 2 groups were also compared. RESULTS There were 108 level 1 and 130 level 2 blunt trauma admissions. In the level 1 group, 67% of pelvic injuries were classified as stable fracture patterns and 33% were classified as unstable. In the level 2 group, 62% of pelvic injuries were classified as stable fracture patterns and 38% were classified as unstable. level 1 trauma code was not associated with odds of having an unstable fracture pattern (OR = 0.83, 95%CI: 0.48-1.41, P = 0.485). In the level 1 group with unstable pelvic injuries, 33% were discharged to home, 36% to a rehabilitation facility, and 32% died. In the level 2 group with unstable pelvic injuries, 65% were discharged to home, 31% to a rehabilitation facility, and 4% died. For those with unstable pelvic fractures (n = 85), assignment of a level 2 trauma code was associated with reduced odds of death (OR = 0.07, 95%CI: 0.01-0.35, P = 0.001) as compared to being discharged to home. CONCLUSION Trauma code level assignment is not correlated with severity of pelvic injury. Because an unstable pelvis can lead to hemodynamic instability, these injuries may be undertriaged. PMID:27622148

  4. The Upgrade of the ATLAS Electron and Photon Triggers for LHC Run 2 and their Performance

    NASA Astrophysics Data System (ADS)

    Thomson, Evelyn; Atlas Collaboration

    2016-03-01

    Electron and photon triggers covering transverse energies from 5 GeV to several TeV are essential for signal selection in a wide variety of ATLAS physics analyses to study Standard Model processes and to search for new phenomena. Final states including leptons and photons had, for example, an important role in the discovery and measurement of the Higgs particle. Dedicated triggers are also used to collect data for calibration, efficiency and fake rate measurements. The ATLAS trigger system is divided in a hardware-based (Level 1) and a software based high level trigger (HLT), both of which were upgraded during the long shutdown of the LHC in preparation for data taking in 2015. The increasing luminosity and more challenging pile-up conditions as well as the planned higher center-of-mass energy demanded the optimisation of the trigger selections at each level, to control the rates and keep efficiencies high. To improve the performance multivariate analysis techniques are introduced at the HLT. The evolution of the ATLAS electron and photon triggers and their performance will be presented, including new results from the 2015 LHC Run 2 operation. Submitted on behalf of ATLAS electron and photon combined performance group. Speaker is yet to be chosen.

  5. The complex that inserts lipopolysaccharide into the bacterial outer membrane forms a two-protein plug-and-barrel.

    PubMed

    Freinkman, Elizaveta; Chng, Shu-Sin; Kahne, Daniel

    2011-02-01

    The cell surfaces of Gram-negative bacteria are composed of lipopolysaccharide (LPS). This glycolipid is found exclusively in the outer leaflet of the asymmetric outer membrane (OM), where it forms a barrier to the entry of toxic hydrophobic molecules into the cell. LPS typically contains six fatty acyl chains and up to several hundred sugar residues. It is biosynthesized in the cytosol and must then be transported across two membranes and an aqueous intermembrane space to the cell surface. These processes are required for the viability of most Gram-negative organisms. The integral membrane β-barrel LptD and the lipoprotein LptE form an essential complex in the OM, which is necessary for LPS assembly. It is not known how this complex translocates large, amphipathic LPS molecules across the OM to the outer leaflet. Here, we show that LptE resides within the LptD β-barrel both in vitro and in vivo. LptD/E associate via an extensive interface; in one specific interaction, LptE contacts a predicted extracellular loop of LptD through the lumen of the β-barrel. Disrupting this interaction site compromises the biogenesis of LptD. This unprecedented two-protein plug-and-barrel architecture suggests how LptD/E can insert LPS from the periplasm directly into the outer leaflet of the OM to establish the asymmetry of the bilayer.

  6. Construction of Ag/AgCl Reference Electrode from Used Felt-Tipped Pen Barrel for Undergraduate Laboratory

    ERIC Educational Resources Information Center

    Inamdar, Shaukatali N.; Bhat, Mohsin A.; Haram, Santosh K.

    2009-01-01

    A reference electrode is one of the prerequisites of electrochemical investigations. Many electrodes are commercially available but are expensive and prone to accidental breakage by students. Here we report a simple, easy-to-fabricate, inexpensive, reliable, unbreakable, and reproducible Ag/AgCl reference electrode. The empty barrel of a…

  7. Molecular Correlates of Cortical Network Modulation by Long-Term Sensory Experience in the Adult Rat Barrel Cortex

    ERIC Educational Resources Information Center

    Vallès, Astrid; Granic, Ivica; De Weerd, Peter; Martens, Gerard J. M.

    2014-01-01

    Modulation of cortical network connectivity is crucial for an adaptive response to experience. In the rat barrel cortex, long-term sensory stimulation induces cortical network modifications and neuronal response changes of which the molecular basis is unknown. Here, we show that long-term somatosensory stimulation by enriched environment…

  8. Vibrations of a taut string and torsional vibration of a gun barrel under the influence of a moving mass

    NASA Astrophysics Data System (ADS)

    Holmberg, B. R.

    1983-08-01

    Vibration of a string under a moving mass is considered. Owing to the interplay between inertial forces and the string tension this problem shows some differences from that of a travelling force. The torsional vibration of a gun barrel induced by the spin-up of a bullet, being of ballistic interest, is also treated.

  9. TP0326, a Treponema pallidum β-barrel assembly machinery A (BamA) orthologue and rare outer membrane protein.

    PubMed

    Desrosiers, Daniel C; Anand, Arvind; Luthra, Amit; Dunham-Ems, Star M; LeDoyt, Morgan; Cummings, Michael A D; Eshghi, Azad; Cameron, Caroline E; Cruz, Adriana R; Salazar, Juan C; Caimano, Melissa J; Radolf, Justin D

    2011-06-01

    Definitive identification of Treponema pallidum rare outer membrane proteins (OMPs) has long eluded researchers. TP0326, the sole protein in T. pallidum with sequence homology to a Gram-negative OMP, belongs to the BamA family of proteins essential for OM biogenesis. Structural modelling predicted that five polypeptide transport-associated (POTRA) domains comprise the N-terminus of TP0326, while the C-terminus forms an 18-stranded amphipathic β-barrel. Circular dichroism, heat modifiability by SDS-PAGE, Triton X-114 phase partitioning and liposome incorporation supported these topological predictions and confirmed that the β-barrel is responsible for the native protein's amphiphilicity. Expression analyses revealed that native TP0326 is expressed at low abundance, while a protease-surface accessibility assay confirmed surface exposure. Size-exclusion chromatography and blue native polyacrylamide gel electrophoresis revealed a modular Bam complex in T. pallidum larger than that of Escherichia coli. Non-orthologous ancillary factors and self-association of TP0326 via its β-barrel may both contribute to the Bam complex. T. pallidum-infected rabbits mount a vigorous antibody response to both POTRA and β-barrel portions of TP0326, whereas humans with secondary syphilis respond predominantly to POTRA. The syphilis spirochaete appears to have devised a stratagem for harnessing the Bam pathway while satisfying its need to limit surface antigenicity. PMID:21488980

  10. Deficiency of the microglial receptor CX3CR1 impairs postnatal functional development of thalamocortical synapses in the barrel cortex.

    PubMed

    Hoshiko, Maki; Arnoux, Isabelle; Avignone, Elena; Yamamoto, Nobuhiko; Audinat, Etienne

    2012-10-24

    Accumulative evidence indicates that microglial cells influence the normal development of brain synapses. Yet, the mechanisms by which these immune cells target maturating synapses and influence their functional development at early postnatal stages remain poorly understood. Here, we analyzed the role of CX3CR1, a microglial receptor activated by the neuronal chemokine CX3CL1 (or fractalkine) which controls key functions of microglial cells. In the whisker-related barrel field of the mouse somatosensory cortex, we show that the recruitment of microglia to the sites where developing thalamocortical synapses are concentrated (i.e., the barrel centers) occurs only after postnatal day 5 and is controlled by the fractalkine/CX3CR1 signaling pathway. Indeed, at this developmental stage fractalkine is overexpressed within the barrels and CX3CR1 deficiency delays microglial cell recruitment into the barrel centers. Functional analysis of thalamocortical synapses shows that CX3CR1 deficiency also delays the functional maturation of postsynaptic glutamate receptors which normally occurs at these synapses between the first and second postnatal week. These results show that reciprocal interactions between neurons and microglial cells control the functional maturation of cortical synapses. PMID:23100431

  11. Large scale digital atlases in neuroscience

    NASA Astrophysics Data System (ADS)

    Hawrylycz, M.; Feng, D.; Lau, C.; Kuan, C.; Miller, J.; Dang, C.; Ng, L.

    2014-03-01

    Imaging in neuroscience has revolutionized our current understanding of brain structure, architecture and increasingly its function. Many characteristics of morphology, cell type, and neuronal circuitry have been elucidated through methods of neuroimaging. Combining this data in a meaningful, standardized, and accessible manner is the scope and goal of the digital brain atlas. Digital brain atlases are used today in neuroscience to characterize the spatial organization of neuronal structures, for planning and guidance during neurosurgery, and as a reference for interpreting other data modalities such as gene expression and connectivity data. The field of digital atlases is extensive and in addition to atlases of the human includes high quality brain atlases of the mouse, rat, rhesus macaque, and other model organisms. Using techniques based on histology, structural and functional magnetic resonance imaging as well as gene expression data, modern digital atlases use probabilistic and multimodal techniques, as well as sophisticated visualization software to form an integrated product. Toward this goal, brain atlases form a common coordinate framework for summarizing, accessing, and organizing this knowledge and will undoubtedly remain a key technology in neuroscience in the future. Since the development of its flagship project of a genome wide image-based atlas of the mouse brain, the Allen Institute for Brain Science has used imaging as a primary data modality for many of its large scale atlas projects. We present an overview of Allen Institute digital atlases in neuroscience, with a focus on the challenges and opportunities for image processing and computation.

  12. Resilience to Disturbance Despite Limited Dispersal and Self-Recruitment in Tropical Barrel Sponges: Implications for Conservation and Management

    PubMed Central

    Bell, James J.; Smith, David; Hannan, Danielle; Haris, Abdul; Jompa, Jamaludin; Thomas, Luke

    2014-01-01

    While estimates of connectivity are important for effective management, few such estimates are available for reef invertebrates other than for corals. Barrel sponges are one of the largest and most conspicuous members of the coral reef fauna across the Indo-Pacific and given their large size, longevity and ability to process large volumes of water, they have a major role in reef functioning. Here we used a panel of microsatellite markers to characterise the genetic structure of two barrel sponge species, Xestospongia testudinaria and a currently undescribed Xestospongia species. We sampled across seven populations in the Wakatobi Marine National Park, SE Sulawesi (Indonesia) spanning a spatial scale of approximately 2 to 70 km, and present the first estimates of demographic connectivity for coral reef sponges. Genetic analyses showed high levels of genetic differentiation between all populations for both species, but contrasting patterns of genetic structuring for the two species. Autocorrelation analyses showed the likely dispersal distances of both species to be in the order of 60 and 140 m for Xestopongia sp. and Xestospongia testudinaria, respectively, which was supported by assignment tests that showed high levels of self-recruitment (>80%). We also found consistently high inbreeding coefficients across all populations for both species. Our study highlights the potential susceptibility of barrel sponges to environmental perturbations because they are generally long-lived, slow growing, have small population sizes and are likely to be reliant on self-recruitment. Surprisingly, despite these features we actually found the highest abundance of both barrel sponge species (although they were generally smaller) at a site that has been severely impacted by humans over the last fifty years. This suggests that barrel sponges exhibit environmental adaptation to declining environmental quality and has important implications for the management and conservation of these

  13. Emissions of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans from the open burning of household waste in barrels

    SciTech Connect

    Lemieux, P.M.; Lutes, C.C.; Abbott, J.A.; Aldous, K.M.

    2000-02-01

    Backyard burning of household waste in barrels is a common waste disposal practice for which pollutant emissions have not been well characterized. This study measured the emissions of several pollutants, including polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDDs/PCDFs), from burning mixtures designed to simulate waste generated by a recycling and a nonrecycling family in a 208-L (55-gal) burn barrel at the EPA's Open Burning Test Facility. This paper focuses on the PCDD/PCDF emissions and discusses the factors influencing PCDD/PCDF formation for different test burns. Four test burns were made in which the amount of waste placed in the barrel varied from 6.4 to 13.6 kg and the amount actually burned varied from 46.6% to 68.1%. Emissions of total PCDDs/PCDFs ranged between 0.0046 and 0.48 mg/kg of waste burned. Emissions are also presented in terms of 2,3,7,8-TCDD toxic equivalents. Emissions of PCDDs/PCDFs appear to correlate with both copper and hydrochloric acid emissions. The results of this study indicate that backyard burning emits more PCDDs/PCDFs on a mass of refuse burned basis than various types of municipal waste combustors (MWCs). Comparison of burn barrel emissions to emissions from a hypothetical modern MWC equipped with high-efficiency flue gas cleaning technology indicates that about 2--40 households burning their trash daily in barrels can produce average PCDD/PCDF emissions comparable to a 182,000 kg/day (200 ton/day) MWC facility. This study provides important data on a potentially significant source of emissions of PCDDs/PCDFs.

  14. The ATLAS Positron Experiment -- APEX

    SciTech Connect

    Ahmad, I.; Back, B.B.; Betts, R.R.; Dunford, R.; Kutschera, W.; Rhein, M.D.; Schiffer, J.P.; Wilt, P.; Wuosmaa, A.; Austin, S.M.; Kashy, E.; Winfield, J.S.; Yurkon, J.E.; Bazin, D.; Calaprice, F.P.; Young, A.; Chan, K.C.; Chisti, A.; Chowhury, P.; Greenberg, J.S.; Kaloskamis, N.; Lister, C.J.; Fox, J.D.; Roa, E.; Freedman, S.; Maier, M.R.; Freer, M.; Gazes, S.; Hallin, A.L.; Liu, M.; Happ, T.; Perera, A.; Wolfs, F.L.H.; Trainor, T.; Wolanski, M. |

    1994-03-01

    APEX -- the ATLAS Positron Experiment -- is designed to measure electrons and positrons emitted in heavy-ion collisions. Its scientific goal is to gain insight into the puzzling positron-line phenomena observed at the GSI Darmstadt. It is in operation at the ATLAS accelerator at Argonne National Lab. The assembly of the apparatus is finished and beginning 1993 the first positrons produced in heavy-ion collisions were observed. The first full scale experiment was carried out in December 1993, and the data are currently being analyzed. In this paper, the principles of operation are explained and a status report on the experiment is given.

  15. Liquid Argon Calorimetry for ATLAS

    NASA Astrophysics Data System (ADS)

    Robinson, Alan

    2008-05-01

    This summer, the largest collaborative physics project since the Manhattan project will go online. One of four experiments for the Large Hadron Collider at CERN in Geneva, ATLAS, employs over 2000 people. Canadians have helped design, construct, and calibrate the liquid argon calorimeters for ATLAS to capture the products of the high energy collisions produced by the LHC. From an undergraduate's perspective, explore how these calorimeters are made to handle their harsh requirement. From nearly a billion proton-proton collisions a second, physicists hope to discover the Higgs boson and other new fundamental particles.

  16. Data flow analysis of a highly parallel processor for a level 1 pixel trigger

    SciTech Connect

    Cancelo, G.; Gottschalk, Erik Edward; Pavlicek, V.; Wang, M.; Wu, J.

    2003-01-01

    The present work describes the architecture and data flow analysis of a highly parallel processor for the Level 1 Pixel Trigger for the BTeV experiment at Fermilab. First the Level 1 Trigger system is described. Then the major components are analyzed by resorting to mathematical modeling. Also, behavioral simulations are used to confirm the models. Results from modeling and simulations are fed back into the system in order to improve the architecture, eliminate bottlenecks, allocate sufficient buffering between processes and obtain other important design parameters. An interesting feature of the current analysis is that the models can be extended to a large class of architectures and parallel systems.

  17. Space Telecommunications Radio System (STRS) Architecture Goals/Objectives and Level 1 Requirements

    NASA Technical Reports Server (NTRS)

    Briones, Janette C.; Johnson, Sandra K.; VanDerAar, Lisa

    2007-01-01

    The Space Telecommunications Radio System (STRS) Architecture Requirements Document provides the basis for the development of an open architecture for NASA Software Defined Radios (SDRs) for space use. The main objective of this document is to evaluate the goals and objectives and high level (Level 1) requirements that have bearing on the design of the architecture. The goals and objectives will provide broad, fundamental direction and purpose. The high level requirements (Level 1) intend to guide the broader and longer term aspects aspects of the SDR Architecture and provide guidance for the development of level 2 requirements.

  18. Atlas-based system for functional neurosurgery

    NASA Astrophysics Data System (ADS)

    Nowinski, Wieslaw L.; Yeo, Tseng T.; Yang, Guo L.; Dow, Douglas E.

    1997-05-01

    This paper addresses the development of an atlas-based system for preoperative functional neurosurgery planning and training, intraoperative support and postoperative analysis. The system is based on Atlas of Stereotaxy of the Human Brain by Schaltenbrand and Wahren used for interactive segmentation and labeling of clinical data in 2D/3D, and for assisting stereotactic targeting. The atlas microseries are digitized, enhanced, segmented, labeled, aligned and organized into mutually preregistered atlas volumes 3D models of the structures are also constructed. The atlas may be interactively registered with the actual patient's data. Several other features are also provided including data reformatting, visualization, navigation, mensuration, and stereotactic path display and editing in 2D/3D. The system increases the accuracy of target definition, reduces the time of planning and time of the procedure itself. It also constitutes a research platform for the construction of more advanced neurosurgery supporting tools and brain atlases.

  19. Anatomical Variant of Atlas : Arcuate Foramen, Occpitalization of Atlas, and Defect of Posterior Arch of Atlas

    PubMed Central

    2015-01-01

    Objective We sought to examine anatomic variations of the atlas and the clinical significance of these variations. Methods We retrospectively reviewed 1029 cervical 3-dimensional (3D) CT images. Cervical 3D CT was performed between November 2011 and August 2014. Arcuate foramina were classified as partial or complete and left and/or right. Occipitalization of the atlas was classified in accordance with criteria specified by Mudaliar et al. Posterior arch defects of the atlas were classified in accordance with criteria specified by Currarino et al. Results One hundred and eight vertebrae (108/1029, 10.5%) showed an arcuate foramen. Bilateral arcuate foramina were present in 41 of these vertebrae and the remaining 67 arcuate foramina were unilateral (right 31, left 36). Right-side arcuate foramina were partial on 18 sides and complete on 54 sides. Left-side arcuate foramina were partial on 24 sides and complete on 53 sides. One case of atlas assimilation was found. Twelve patients (12/1029, 1.17%) had a defect of the atlantal posterior arch. Nine of these patients (9/1029, 0.87%) had a type A posterior arch defect. We also identified one type B, one type D, and one type E defect. Conclusion Preoperative diagnosis of occipitalization of the atlas and arcuate foramina using 3D CT is of paramount importance in avoiding neurovascular injury during surgery. It is important to be aware of posterior arch defects of the atlas because they may be misdiagnosed as a fracture. PMID:26819687

  20. Summary of types of radiation belt electron precipitation observed by BARREL

    NASA Astrophysics Data System (ADS)

    Halford, Alexa

    2016-07-01

    The Balloon Array for Relativistic Radiation belt Electron Loss (BARREL) was able to infer precipitation of radiation belt electrons on multiple time scales and due to multiple loss mechanisms. One storm will be specifically highlighted which occurred on 26 January 2013 when a solar wind shock hit the Earth. Although MeV electrons were observed to be lost due to an EMIC wave event [Zhang et al in prep], and multiple periods of electron loss during substorms were observed [Rae et al submitted JGR, Mann et al in prep], we will consider an event period where loss associated with multiple time scales, and thus possibly different loss mechanisms was observed from 1000 - 1200 UT on 26 January 2013. At about 1005 UT on 26 January 2013 an injection of radiation belt electrons followed by drift echoes for energies of ˜80 - 400 keV. BARREL observed X-rays with energies less than 180 keV associated with multiple temporal structures during the drift echo event period. The Van Allen Probes were at similar L-values but upwards of 2 hours away in MLT. Upper band chorus and ULF waves were observed during the event period. Throughout the beginning of the event period, microbursts were clearly observed. During this time lower band chorus waves as well as time domain structures were observed at Van Allen Probe A located upwards of 2 hours away in MLT. This large difference in MLT meant that neither potential loss mechanism was able to be clearly associated with the microbursts. As the lower band chorus and time domain structures were observed to recede, the microbursts were also observed to subside. ULF time scale modulation of the X-rays was also observed throughout most of the event period. We will examine if the ULF waves are the cause of the precipitation themselves, or are modulating the loss of particles from a secondary loss mechanism [Brito et al 2015 JGR, Rae et al Submitted JGR]. Although the 100s ms and ULF time scales are clearly observed, there is an ˜20 minute

  1. ATLAS Inner Detector Event Data Model

    SciTech Connect

    ATLAS; Akesson, F.; Costa, M.J.; Dobos, D.; Elsing, M.; Fleischmann, S.; Gaponenko, A.; Gnanvo, K.; Keener, P.T.; Liebig, W.; Moyse, E.; Salzburger, A.; Siebel, M.; Wildauer, A.

    2007-12-12

    The data model for event reconstruction (EDM) in the Inner Detector of the ATLAS experiment is presented. Different data classes represent evolving stages in the reconstruction data flow, and specific derived classes exist for the sub-detectors. The Inner Detector EDM also extends the data model for common tracking in ATLAS and is integrated into the modular design of the ATLAS high-level trigger and off-line software.

  2. The ATLAS Facility at Argonne National Laboratory

    SciTech Connect

    1997-07-01

    The Argonne Tandem Linac Accelerator System (ATLAS) is a superconducting low-energy heavy ion accelerator. Its primary purpose is to provide beams for research in nuclear structure physics. This report begins with a brief history of ATLAS and then describes the current design of the facility. Also summarized are the experimental equipment and research programs. It concludes with a proposal for turning ATLAS into a radioactive beam facility.

  3. The tyrosine corner: a feature of most Greek key beta-barrel proteins.

    PubMed Central

    Hemmingsen, J. M.; Gernert, K. M.; Richardson, J. S.; Richardson, D. C.

    1994-01-01

    The Tyr corner is a conformation in which a tyrosine (residue "Y") near the beginning or end of an antiparallel beta-strand makes an H bond from its side-chain OH group to the backbone NH and/or CO of residue Y - 3, Y - 4, or Y - 5 in the nearby connection. The most common "classic" case is a delta 4 Tyr corner (more than 40 examples listed), in which the H bond is to residue Y - 4 and the Tyr chi 1 is near -60 degrees. Y - 2 is almost always a glycine, whose left-handed beta or very extended beta conformation helps the backbone curve around the Tyr ring. Residue Y - 3 is in polyproline II conformation (often Pro), and residue Y - 5 is usually a hydrophobic (often Leu) that packs next to the Tyr ring. The consensus sequence, then, is LxPGxY, where the first x (the H-bonding position) is hydrophilic. Residues Y and Y - 2 both form narrow pairs of beta-sheet H-bonds with the neighboring strand. delta 5 Tyr corners have a 1-residue insertion between the Gly and Tyr, forming a beta-bulge. One protein family has a delta 4 corner formed by a His rather than a Tyr, and several examples use Trp in place of Tyr. For almost all these cases, the protein or domain is a Greek key beta-barrel structure, the Tyr corner ends a Greek key connection, and it is well-conserved in related proteins. Most low-twist Greek key beta-barrels have 1 Tyr corner. "Reverse" delta 4 Tyr corners (H bonded to Y + 4) and other variants are described, all less common and less conserved. It seems likely that the more classic Tyr corners (delta 4, delta 5, and delta 3 Tyr, Trp, or His) contribute to the stability of a Greek key connection over a hairpin connection, and also that they may aid in the process of folding up Greek key structures. PMID:7703839

  4. 78 FR 26396 - Proposed Collection; Comments Requested: FBI National Academy Level 1 Evaluation: Student Course...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-06

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF JUSTICE Proposed Collection; Comments Requested: FBI National Academy Level 1 Evaluation: Student Course Questionnaire and FBI National Academy: General Remarks Questionnaire ACTION: 30-Day Notice. The Department of Justice (DOJ), Federal Bureau of Investigation...

  5. Estimated level 1.5 bridge scour at selected sites in North Dakota, 1999-2002

    USGS Publications Warehouse

    Williams-Sether, Tara

    2003-01-01

    The Level 1.5 method is a limited-detail method that is used for quick estimates of bridge scour. The method was developed by the U.S. Geological Survey in Montana and was used to estimate scour depths at 215 bridge sites located on secondary roads throughout North Dakota. The estimated scour depths are presented in tabular form.

  6. Farm Management and Leadership. Numeracy. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Gadd, Nick; Lucas, Michele

    This publication contains the three numeracy units of the three levels of Support Materials for Agricultural Training (SMAT) in farm management and leadership: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her numeracy skills needed to deal with farm management. SMAT materials can…

  7. Agricultural Production. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Gadd, Nick; Lucas, Michele

    This publication contains the three communication skills units of the three levels of Support Materials for Agricultural Training (SMAT) in agricultural production: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her written and spoken communication skills needed to deal with…

  8. Occupational Health and Safety. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Gadd, Nick; Lucas, Michele

    This publication contains the three communication skills units of the three levels of Support Materials for Agricultural Training (SMAT) in the area of occupational health and safety: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her written and spoken communication skills needed…

  9. Farm Management and Leadership. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Gadd, Nick; Lucas, Michele

    This publication contains the three communication skills units of the three levels of Support Materials for Agricultural Training (SMAT) in farm management and leadership: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner with the reading, writing, and spoken communication skills needed to deal with…

  10. Farmers as Employers. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Gadd, Nick; Lucas, Michele

    This publication contains the three communication skills units of the three levels of Support Materials for Agricultural Training (SMAT) in the area of farmers as employers: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her written and spoken communication and numeracy skills…

  11. Occupational Health and Safety. Numeracy. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Tully, Chris

    This publication contains the three numeracy units of the three levels of Support Materials for Agricultural Training (SMAT) in the area of occupational health and safety: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her numeracy skills needed to deal with occupational safety and…

  12. Agricultural Production. Numeracy. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Tully, Chris

    This publication contains the three numeracy units of the three levels of Support Materials for Agricultural Training (SMAT) in agricultural production: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her numeracy skills needed to deal with agricultural production. SMAT materials…

  13. Farmers as Employers. Numeracy. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Tully, Chris

    This publication contains the three numeracy units of the three levels of Support Materials for Agricultural Training (SMAT) in the area of farmers as employers: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her numeracy skills needed to deal with employment of agriculture…

  14. A Tracking Analysis of Compact Students within Level 1 of Their Higher Education Programmes

    ERIC Educational Resources Information Center

    Wakely, Katrina; Saunders, Danny

    2004-01-01

    This article presents a tracking analysis of level 1 undergraduates who entered the University of Glamorgan through the Compact schools initiative. The Compact initiative aims to widen access to higher education by encouraging young people from disadvantaged backgrounds to attend a range of preparatory activities and by offering lower entry…

  15. MISR Level 1A CCD Science data, all cameras (MIL1A_V2)

    NASA Technical Reports Server (NTRS)

    Diner, David J. (Principal Investigator)

    The Level 1A data are raw MISR data that are decommutated, reformatted 12-bit Level 0 data shifted to byte boundaries, i.e., reversal of square-root encoding applied and converted to 16 bit, and annotated (e.g., with time information). These data are used by the Level 1B1 processing algorithm to generate calibrated radiances. The science data output preserves the spatial sampling rate of the Level 0 raw MISR CCD science data. CCD data are collected during routine science observations of the sunlit portion of the Earth. Each product represents one 'granule' of data. A 'granule' is defined to be the smallest unit of data required for MISR processing. Also, included in the Level 1A product are pointers to calibration coefficient files provided for Level 1B processing. [Location=GLOBAL] [Temporal_Coverage: Start_Date=2000-02-24; Stop_Date=] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180].

  16. MISR Level 1A CCD Science data, all cameras (MIL1A_V1)

    NASA Technical Reports Server (NTRS)

    Diner, David J. (Principal Investigator)

    The Level 1A data are raw MISR data that are decommutated, reformatted 12-bit Level 0 data shifted to byte boundaries, i.e., reversal of square-root encoding applied and converted to 16 bit, and annotated (e.g., with time information). These data are used by the Level 1B1 processing algorithm to generate calibrated radiances. The science data output preserves the spatial sampling rate of the Level 0 raw MISR CCD science data. CCD data are collected during routine science observations of the sunlit portion of the Earth. Each product represents one 'granule' of data. A 'granule' is defined to be the smallest unit of data required for MISR processing. Also, included in the Level 1A product are pointers to calibration coefficient files provided for Level 1B processing. [Location=GLOBAL] [Temporal_Coverage: Start_Date=2000-02-24; Stop_Date=] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180].

  17. Teaching Guide for Indian Literature. Volume I. Reading Level 1-8.

    ERIC Educational Resources Information Center

    Campbell, Diana; McCarty, T. L., Ed.

    The guide describes how to use a 9-point system to teach 11 high-interest, low-level novels about Indians and teenagers to students reading at levels 1-8. The nine steps are (1) determine student's instructional reading level, (2) determine level of novels to be read, (3) choose novel at student's instructional reading level, (4) introduce novel,…

  18. BOREAS RSS-14 Level 1a GOES-7 Visible, IR, and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Newcomer, Jeffrey A.; Faysash, David; Cooper, Harry J.; Smith, Eric A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed GOES-7 and -8 images of the BOREAS region as part of its effort to characterize the incoming, reflected, and emitted radiation at regional scales. The level-1a BOREAS GOES-7 image data were collected by RSS-14 personnel at FSU and processed to level-1a products by BORIS personnel. The data cover the period of 01-Jan-1994 through 08-Jul-1995 with partial to complete coverage on the majority of the days. The data include three bands with eightbit pixel values. No major problems with the data have been identified. Due to the large size of the images, the level-1a GOES-7 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1a GOES-7 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  19. Criterion Referenced Tests to Accompany "Artes Latinae," Level 1, Book 1. Tentative Edition.

    ERIC Educational Resources Information Center

    Masciantonio, Rudolph

    These tests are designed to measure the achievement of each pupil at the approximate midpoint of each unit in "Artes Latinae," Level 1, Book 1. They were produced in response to the need expressed by many teachers to provide a means of more frequent evaluation of pupil progress. Tests for 13 units are provided. They supplement the unit tests…

  20. 40 CFR 63.922 - Standards-Container Level 1 controls.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 11 2014-07-01 2014-07-01 false Standards-Container Level 1 controls. 63.922 Section 63.922 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR... on a roll-off box) or may be an integral part of the container structural design (e.g., a bulk...

  1. Missing Transverse Momentum Trigger Performance Studies for the ATLAS Calorimeter Trigger Upgrades

    NASA Astrophysics Data System (ADS)

    Stamas, Brianna; Parrish, Elliot; Lisi, Luc; Dudley, Christopher; Majewski, Stephanie

    2016-03-01

    The ATLAS Experiment is one of two general purpose detectors at the Large Hadron Collider at CERN in Geneva, Switzerland. In anticipation of discovering new physics, the detector will undergo numerous hardware upgrades including improvements to the Liquid Argon Calorimeter trigger electronics. For the upgrade, one component of the Level-1 trigger system will be the global feature extractor, gFEX, which will house three field programmable gate arrays (FPGAs). Specifically, in order to improve the missing transverse energy (ETmiss)trigger, an adapted topological clustering algorithm is being investigated for implementation on the FPGAs for reconstruction of proton-proton interactions in the ATLAS detector. Using simulated data, this study analyzes the performance of the adapted algorithm in software.

  2. Report to users of ATLAS, December 1995

    SciTech Connect

    Ahmad, I.; Glagola, B.

    1995-12-01

    This report covers the following: status of ATLAS accelerator; highlights of recent research at ATLAS; research related concept for an Advanced Exotic Beam Facility on ATLAS; program advisory committee; and ATLAS user group executive committee. Research highlights are given for the following: APEX progress report; transport efficiency of the Argonne Fragment Mass Analyzer; collective motion in light polonium isotopes; angular correlation measurements for {sup 12}C(g.s.) + {sup 12}C(3{minus},9.64MeV) inelastic scattering; and the AYE-ball (Argonne-Yale-European gamma spectrometer) used to study the structure of nuclei far from stability.

  3. Image database for digital hand atlas

    NASA Astrophysics Data System (ADS)

    Cao, Fei; Huang, H. K.; Pietka, Ewa; Gilsanz, Vicente; Dey, Partha S.; Gertych, Arkadiusz; Pospiech-Kurkowska, Sywia

    2003-05-01

    Bone age assessment is a procedure frequently performed in pediatric patients to evaluate their growth disorder. A commonly used method is atlas matching by a visual comparison of a hand radiograph with a small reference set of old Greulich-Pyle atlas. We have developed a new digital hand atlas with a large set of clinically normal hand images of diverse ethnic groups. In this paper, we will present our system design and implementation of the digital atlas database to support the computer-aided atlas matching for bone age assessment. The system consists of a hand atlas image database, a computer-aided diagnostic (CAD) software module for image processing and atlas matching, and a Web user interface. Users can use a Web browser to push DICOM images, directly or indirectly from PACS, to the CAD server for a bone age assessment. Quantitative features on the examined image, which reflect the skeletal maturity, are then extracted and compared with patterns from the atlas image database to assess the bone age. The digital atlas method built on a large image database and current Internet technology provides an alternative to supplement or replace the traditional one for a quantitative, accurate and cost-effective assessment of bone age.

  4. Global GIS database; digital atlas of Africa

    USGS Publications Warehouse

    Hearn, P.P.; Hare, T.M.; Schruben, P.; Sherrill, D.; LaMar, C.; Tsushima, P.

    2001-01-01

    This CD-ROM contains a digital atlas of the countries of Africa. This atlas is part of a global database compiled from USGS and other data sources at a nominal scale of 1:1 million and is intended to be used as a regional-scale reference and analytical tool by government officials, researchers, the private sector, and the general public. The atlas includes free GIS software or may be used with ESRI's ArcView software. Customized ArcView tools, specifically designed to make this atlas easier to use, are also included.

  5. Book review: Oklahoma Breeding Bird Atlas

    USGS Publications Warehouse

    Peterjohn, Bruce G.

    2004-01-01

    The first North American breeding bird atlases were initiated during the 1970s. With atlases completed or ongoing in more than 40 U.S. states and most Canadian provinces, these projects are now familiar to professional ornithologists and amateur birders. This book provides the results of the Oklahoma Breeding Bird Atlas, the data for which were collected during 1997–2001. Its appearance less than 3 years after completing fieldwork is remarkable and everyone associated with its timely publication should be congratulated for their efforts.Review info: Oklahoma Breeding Bird Atlas. By Dan L. Reinking, 2004. ISBN: 0806136146, 528 pp.

  6. Commissioning of the ATLAS pixel detector

    SciTech Connect

    ATLAS Collaboration; Golling, Tobias

    2008-09-01

    The ATLAS pixel detector is a high precision silicon tracking device located closest to the LHC interaction point. It belongs to the first generation of its kind in a hadron collider experiment. It will provide crucial pattern recognition information and will largely determine the ability of ATLAS to precisely track particle trajectories and find secondary vertices. It was the last detector to be installed in ATLAS in June 2007, has been fully connected and tested in-situ during spring and summer 2008, and is ready for the imminent LHC turn-on. The highlights of the past and future commissioning activities of the ATLAS pixel system are presented.

  7. Learning with the ATLAS experiment at CERN

    NASA Astrophysics Data System (ADS)

    Barnett, R. M.; Johansson, K. E.; Kourkoumelis, C.; Long, L.; Pequenao, J.; Reimers, C.; Watkins, P.

    2012-01-01

    With the start of the LHC, the new particle collider at CERN, the ATLAS experiment is also providing high-energy particle collisions for educational purposes. Several education projects—education scenarios—have been developed and tested on students and teachers in several European countries within the Learning with ATLAS@CERN project. These highly appreciated projects could become a new component in many teachers' classrooms. The Learning with ATLAS portal and the information on the ATLAS public website make it possible for teachers to design educational material for their own situations. To be able to work with real data adds a new dimension to particle physics explorations at school.

  8. Digital atlas for spinal x rays

    NASA Astrophysics Data System (ADS)

    Long, L. Rodney; Pillemer, Stanley R.; Goh, Gin-Hua; Berman, Lewis E.; Neve, Leif; Thoma, George R.; Premkumar, Ahalya; Ostchega, Yechiam; Lawrence, Reva C.; Altman, Roy D.; Lane, Nancy E.; Scott, William W., Jr.

    1997-05-01

    At the National Library of Medicine we are developing a digital atlas to serve as a reference tool for the interpretation of cervical and lumbar spine x-rays. The atlas contains representative images for four grades of severity for cervical/lumbar spondylolisthesis. A prototype version of the atlas has been built using images for which expert rheumatologist readers reached exact agreement in grading. The atlas functionality includes the ability to display cervical and lumbar anatomy, display of single images or multiple simultaneous images, image processing functions, and capability to ad user-defined images to the atlas. Images are selected for display by the user specifying feature and grade. Currently, the atlas runs on a Sun SPARC workstation under the Solaris operating system. THe initial use of the atlas is to aid in reading a collection of 17,000 NHANES II digitized x-rays. The atlas may also be used as a general digital reference tool for the standardized interpretation of digital x-rays for osteoarthritis. We are investigating further development of the atlas to accommodate a wider set of images, to operate on multiple platforms, and to be accessible via the WWW.

  9. The Read Out Controller for the ATLAS New Small Wheel

    NASA Astrophysics Data System (ADS)

    Coliban, R.-M.; Popa, S.; Tulbure, T.; Nicula, D.; Ivanovici, M.; Martoiu, S.; Levinson, L.; Vermeulen, J.

    2016-02-01

    In the upgrade process of the ATLAS detector, the innermost stations of the endcaps (Small Wheels) will be replaced. The New Small Wheel will have two chamber technologies, small-strip Thin Gap Chambers and Micromegas, each providing triggering and precision track measurement. Custom front-end Application Specific Integrated Circuits will be used to read and filter information from both types of detectors. In the context of the New Small Wheel data path, the Read Out Controller ASIC is used for handling, preprocessing and formatting the data generated by the VMM upstream chips. The Read Out Controller will concentrate the data streams from 8 VMMs, filter data based on the ATLAS Level-1 trigger which identifies bunch crossings of interest and transmit the data to FELIX via the L1DDC. The Read Out Controller is composed of 8 VMM Capture modules, a cross-bar and 4 sROC modules. The output data is sent via up to 4 serial links with a configurable speed of 80, 160 or 320 Mbps per link.

  10. A hardware fast tracker for the ATLAS trigger

    NASA Astrophysics Data System (ADS)

    Asbah, Nedaa

    2016-09-01

    The trigger system of the ATLAS experiment is designed to reduce the event rate from the LHC nominal bunch crossing at 40 MHz to about 1 kHz, at the design luminosity of 1034 cm-2 s-1. After a successful period of data taking from 2010 to early 2013, the LHC already started with much higher instantaneous luminosity. This will increase the load on High Level Trigger system, the second stage of the selection based on software algorithms. More sophisticated algorithms will be needed to achieve higher background rejection while maintaining good efficiency for interesting physics signals. The Fast TracKer (FTK) is part of the ATLAS trigger upgrade project. It is a hardware processor that will provide, at every Level-1 accepted event (100 kHz) and within 100 microseconds, full tracking information for tracks with momentum as low as 1 GeV. Providing fast, extensive access to tracking information, with resolution comparable to the offline reconstruction, FTK will help in precise detection of the primary and secondary vertices to ensure robust selections and improve the trigger performance. FTK exploits hardware technologies with massive parallelism, combining Associative Memory ASICs, FPGAs and high-speed communication links.

  11. Pictorial Atlas of the Netherlands.

    ERIC Educational Resources Information Center

    Information and Documentation Centre for the Geography of the Netherlands, Utrecht.

    The atlas contains almost 40 photographs and 40 maps of geographical aspects of the Netherlands: the coast, dikes, canals, towns, and farmland. Each page contains a photograph, a section of a map showing the area in which the photograph was taken, and a discussion of several paragraphs about the geographical problems of the area and how they have…

  12. Event selection services in ATLAS

    NASA Astrophysics Data System (ADS)

    Cranshaw, J.; Cuhadar-Donszelmann, T.; Gallas, E.; Hrivnac, J.; Kenyon, M.; McGlone, H.; Malon, D.; Mambelli, M.; Nowak, M.; Viegas, F.; Vinek, E.; Zhang, Q.

    2010-04-01

    ATLAS has developed and deployed event-level selection services based upon event metadata records ("TAGS") and supporting file and database technology. These services allow physicists to extract events that satisfy their selection predicates from any stage of data processing and use them as input to later analyses. One component of these services is a web-based Event-Level Selection Service Interface (ELSSI). ELSSI supports event selection by integrating run-level metadata, luminosity-block-level metadata (e.g., detector status and quality information), and event-by-event information (e.g., triggers passed and physics content). The list of events that survive after some selection criterion is returned in a form that can be used directly as input to local or distributed analysis; indeed, it is possible to submit a skimming job directly from the ELSSI interface using grid proxy credential delegation. ELSSI allows physicists to explore ATLAS event metadata as a means to understand, qualitatively and quantitatively, the distributional characteristics of ATLAS data. In fact, the ELSSI service provides an easy interface to see the highest missing ET events or the events with the most leptons, to count how many events passed a given set of triggers, or to find events that failed a given trigger but nonetheless look relevant to an analysis based upon the results of offline reconstruction, and more. This work provides an overview of ATLAS event-level selection services, with an emphasis upon the interactive Event-Level Selection Service Interface.

  13. Atlas of fetal skeletal radiology

    SciTech Connect

    Ornov, A.; Borochowitz, Z.; Lachman, R.; Rimoin, D.L.

    1987-01-01

    This atlas presents anterior, posterior and lateral views of normal but spontaneously aborted fetuses from 10 weeks through 27 weeks of gestation. The series of radiographs exhibits a wide array of skeletal dysplasia, and a chapter on the normal chondroosseous development - the formation of cartilage and bone and ossification of individual bones is included for further clarification.

  14. Atlas of the Soviet Union.

    ERIC Educational Resources Information Center

    Young, Harry F.

    This atlas consists of 20 maps, tables, charts, and graphs with complementary text illustrating Soviet government machinery, trade and political relations, and military stance. Some topics depicted by charts and graphs include: (1) Soviet foreign affairs machinery; (2) Soviet intelligence and security services; (4) Soviet position in the United…

  15. Atlas of the African Child.

    ERIC Educational Resources Information Center

    Patel, Mahesh, Ed.

    Using data primarily from United Nations Statistical Yearbooks, but from other sources as well, this Atlas provides an overview, in graphical form, of issues affecting children in Africa. Some of the issues covered, such as immunization, affect children directly. Others, such as economic progress, are included because they form part of the…

  16. Cross‐species chimeras reveal BamA POTRA and β‐barrel domains must be fine‐tuned for efficient OMP insertion

    PubMed Central

    Bavro, Vassiliy N.; Mason, Jessica L.; Sevastsyanovich, Yanina R.; Rossiter, Amanda E.; Jeeves, Mark; Wells, Timothy J.; Knowles, Timothy J.; Cunningham, Adam F.; Donald, James W.; Palmer, Tracy; Overduin, Michael

    2015-01-01

    Summary BAM is a conserved molecular machine, the central component of which is BamA. Orthologues of BamA are found in all Gram‐negative bacteria, chloroplasts and mitochondria where it is required for the folding and insertion of β‐barrel containing integral outer membrane proteins (OMPs) into the outer membrane. BamA binds unfolded β‐barrel precursors via the five polypeptide transport‐associated (POTRA) domains at its N‐terminus. The C‐terminus of BamA folds into a β‐barrel domain, which tethers BamA to the outer membrane and is involved in OMP insertion. BamA orthologues are found in all Gram‐negative bacteria and appear to function in a species‐specific manner. Here we investigate the nature of this species‐specificity by examining whether chimeric E scherichia coli  BamA fusion proteins, carrying either the β‐barrel or POTRA domains from various BamA orthologues, can functionally replace E . coli  BamA. We demonstrate that the β‐barrel domains of many BamA orthologues are functionally interchangeable. We show that defects in the orthologous POTRA domains can be rescued by compensatory mutations within the β‐barrel. These data reveal that the POTRA and barrel domains must be precisely aligned to ensure efficient OMP insertion. PMID:25943387

  17. The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content.

    PubMed

    Bakker, Rembrandt; Tiesinga, Paul; Kötter, Rolf

    2015-07-01

    The Scalable Brain Atlas (SBA) is a collection of web services that provide unified access to a large collection of brain atlas templates for different species. Its main component is an atlas viewer that displays brain atlas data as a stack of slices in which stereotaxic coordinates and brain regions can be selected. These are subsequently used to launch web queries to resources that require coordinates or region names as input. It supports plugins which run inside the viewer and respond when a new slice, coordinate or region is selected. It contains 20 atlas templates in six species, and plugins to compute coordinate transformations, display anatomical connectivity and fiducial points, and retrieve properties, descriptions, definitions and 3d reconstructions of brain regions. The ambition of SBA is to provide a unified representation of all publicly available brain atlases directly in the web browser, while remaining a responsive and light weight resource that specializes in atlas comparisons, searches, coordinate transformations and interactive displays.

  18. The Molecular Atlas Project

    NASA Astrophysics Data System (ADS)

    Silverberg, Jesse; Yin, Peng

    The promise of super-resolution microscopy is a technology to discover new biological mechanisms that occur at smaller length scales then previously observable. However, with higher-resolution, we generally lose the larger spatial context of the image itself. The Molecular Atlas Project (MAP) directly asks how these competing interests between super-resolution imaging and broader spatially contextualized information can be reconciled. MAP enables us to acquire, visualize, explore, and annotate proteomic image data representing 7 orders of magnitude in length ranging from molecular (nm) to tissue (cm) scales. This multi-scale understanding is made possible by combining multiplexed DNA-PAINT, a DNA nanotechnology approach to super-resolution imaging, with ``big-data'' strategies for information management and image visualization. With these innovations combined, MAP enables us to explore cell-specific heterogeneity in ductal carcinoma for every cellin a cm-sized tissue section, analyze organoid growth for advances in high-throughput tissue-on-a-chip technology, and examine individual synapses for connectome mapping over extremely wide areas. Ultimately, MAP is a fundamentally new way to interact with multiscale biophysical data.

  19. [Testing Research of Transient Temperature Distribution for the Barrel Surface by Speckle Pattern Interferometry].

    PubMed

    Lang, Wen-jie; Chen, Guo-guang; Tian, Xiao-li; Xin, Chang-fan

    2016-02-01

    There are some problems in the traditional transient temperature test equipment. The thermal inertia is great, and can only be a single point of detection. To be able to achieve real-time monitoring for transient temperature distribution change of the gun body surface, the test system for transient temperature distribution was designed based on Speckle Pattern Interferometry (SPI) and spectroscopy. In the system, transient temperature change of the barrel led to slight deformation, and it was converted into speckle interference fringes by SPI technology. Spectral distribution function was obtained by the interference fringes by the Fourier transform, so the information of interference fringe deformation was incorporated into the frequency domain. The data of temperature distribution can be inverted on any sampling time by spectral distribution function. In experiments, the ZX-FB1 fiber optic thermometer was used to test transient temperature on a single point as the standard value. The center wavelength of the laser was 555 nm, and the speckle pattern interference fringes were collected by area array CCD. Image Recognition-Speckle Pattern Interferometry (IR-SPI) and Fourier Transform-Speckle Pattern Interferometry (FT-SPI) were used in experiments, the calculation of transient temperature was completed through two methods. Experimental results are that both methods can achieve transient temperature detection. But the FT-SPI is higher in terms of accuracy, and it can effectively overcome the gross error caused by the surface defects, paint wear and other similar problems. PMID:27209730

  20. A dynamic model for generating actuator specifications for small arms barrel active stabilization

    NASA Astrophysics Data System (ADS)

    Pathak, Anupam; Brei, Diann; Luntz, Jonathan; Lavigna, Chris

    2006-03-01

    Due to stresses encountered in combat, it is known that soldier marksmanship noticeably decreases regardless of prior training. Active stabilization systems in small arms have potential to address this problem to increase soldier survivability and mission effectiveness. The key to success is proper actuator design, but this is highly dependent on proper specification which is challenging due to the human/weapon interaction. This paper presents a generic analytical dynamic model which is capable of defining the necessary actuation specifications for a wide range of small arms platforms. The model is unique because it captures the human interface--shoulder and arm--that introduces the jitter disturbance in addition to the geometry, inertial properties and active stabilization stiffness of the small arms platform. Because no data to date is available for actual shooter-induced disturbance in field conditions, a method is given using the model to back-solve from measured shooting range variability data the disturbance amplitude information relative to the input source (arm or shoulder). As examples of the applicability of the model to various small arms systems, two different weapon systems were investigated: the M24 sniper weapon and the M16 assault rifle. In both cases, model based simulations provided valuable insight into impact on the actuation specifications (force, displacement, phase, frequency) due to the interplay of the human-weapon-active stabilization interface including the effect of shooter-disturbance frequency, disturbance location (shoulder vs. arm), and system parameters (stiffness, barrel rotation).

  1. Barrel time-of-flight detector for the PANDA experiment at FAIR

    NASA Astrophysics Data System (ADS)

    Gruber, L.; Brunner, S. E.; Marton, J.; Orth, H.; Suzuki, K.

    2016-07-01

    The barrel time-of-flight detector for the PANDA experiment at FAIR is foreseen as a Scintillator Tile (SciTil) Hodoscope based on several thousand small plastic scintillator tiles read-out with directly attached Silicon Photomultipliers (SiPMs). The main tasks of the system are an accurate determination of the time origin of particle tracks to avoid event mixing at high collision rates, relative time-of-flight measurements as well as particle identification in the low momentum regime. The main requirements are the use of a minimum material amount and a time resolution of σ < 100 ps. We have performed extensive optimization studies and prototype tests to prove the feasibility of the SciTil design and finalize the R&D phase. In a 2.7 GeV/c proton beam at Forschungszentrum Jülich a time resolution of about 80 ps has been achieved using SiPMs from KETEK and Hamamatsu with an active area of 3 × 3mm2. Employing the Digital Photon Counter from Philips a time resolution of about 30 ps has been reached.

  2. Systolic architectures based on barrel shifters for real-time digital signal processing

    SciTech Connect

    Chen, T.

    1985-01-01

    The throughput in real-time digital signal processing applications is limited by both the capability of the processors employed for number-crunching operations and the capacity of a supporting communications link. The systolic architectures eliminate the memory bandwidth problems by allowing multiple computations for each memory access and result in a speed-up in the execution time of compute-bound computations. However, the throughput rate in a systolic array is still limited by the computational time needed for one basic cell, which is composed of a multiplier and an accumulator. The multiplier in the basic cell requires either a large chip area if high speed is desired, or a large amount of time if serial architecture is used. The use of barrel shifters as computational elements in systolic arrays was proposed and studied in detail in this thesis. In the new systolic arrays there are two different structures, parallel and cascaded, that can be used to implement FIR filters. A unique cascaded structure was developed in this study that is shown to have better performance and requires significantly less basic cells.

  3. Observation and modelling of barrel droplets on vertical fibres subjected to gravitational and drag forces.

    PubMed

    Mullins, Benjamin J; Braddock, Roger D; Agranovski, Igor E; Cropp, Roger A

    2006-08-15

    Extensive experimental investigation of the wetting processes of fibre/liquid systems during air filtration (when drag and gravitational forces are acting) has shown many important features, including droplet extension, oscillatory motion, and detachment or flow of drops from fibres as airflow velocity increases. A detailed experimental study of the aforementioned processes was conducted using glass filter fibres and H(2)O aerosol, which coalesce on the fibre to form barrel droplets with small contact angles. The droplets were predominantly observed in the Reynolds transition (or unsteady laminar) flow region. The droplet oscillation appears to be induced by the onset of vortexes in the flow field around the droplet as the increasing droplet size increases the Reynolds number. Flow in this region is usually modelled using the classical two-dimensional Karman vortex street, and there exist no 3D equivalents. Therefore to model such oscillation it was necessary to create a new conceptual model to account for the forces both inducing and inhibiting such oscillation. The agreement between the model and experimental results is acceptable for both the radial and transverse oscillations. PMID:16777127

  4. Detergent-associated Solution Conformations of Helical and Beta-barrel Membrane Proteins

    SciTech Connect

    Mo, Yiming; Lee, Byung-Kwon; Ankner, John Francis; Becker, Jeffrey Marvin; Heller, William T

    2008-01-01

    Membrane proteins present major challenges for structural biology. In particular, the production of suitable crystals for high-resolution structural determination continues to be a significant roadblock for developing an atomic-level understanding of these vital cellular systems. The use of detergents for extracting membrane proteins from the native membrane for either crystallization or reconstitution into model lipid membranes for further study is assumed to leave the protein with the proper fold with a belt of detergent encompassing the membrane-spanning segments of the structure. Small-angle X-ray scattering was used to probe the detergent-associated solution conformations of three membrane proteins, namely bacteriorhodopsin (BR), the Ste2p G-protein coupled receptor from Saccharomyces cerevisiae, and the Escherichia coli porin OmpF. The results demonstrate that, contrary to the traditional model of a detergent-associated membrane protein, the helical proteins BR and Ste2p are not in the expected, compact conformation and associated with detergent micelles, while the ?-barrel OmpF is indeed embedded in a disk-like micelle in a properly folded state. The comparison provided by the BR and Ste2p, both members of the 7TM family of helical membrane proteins, further suggests that the interhelical interactions between the transmembrane helices of the two proteins differ, such that BR, like other rhodopsins, can properly refold to crystallize, while Ste2p continues to prove resistant to crystallization from an initially detergent-associated state.

  5. Informational basis of sensory adaptation: entropy and single-spike efficiency in rat barrel cortex.

    PubMed

    Adibi, Mehdi; Clifford, Colin W G; Arabzadeh, Ehsan

    2013-09-11

    We showed recently that exposure to whisker vibrations enhances coding efficiency in rat barrel cortex despite increasing correlations in variability (Adibi et al., 2013). Here, to understand how adaptation achieves this improvement in sensory representation, we decomposed the stimulus information carried in neuronal population activity into its fundamental components in the framework of information theory. In the context of sensory coding, these components are the entropy of the responses across the entire stimulus set (response entropy) and the entropy of the responses conditional on the stimulus (conditional response entropy). We found that adaptation decreased response entropy and conditional response entropy at both the level of single neurons and the pooled activity of neuronal populations. However, the net effect of adaptation was to increase the mutual information because the drop in the conditional entropy outweighed the drop in the response entropy. The information transmitted by a single spike also increased under adaptation. As population size increased, the information content of individual spikes declined but the relative improvement attributable to adaptation was maintained.

  6. Beam mode core-barrel vibrations in the PWRs Ringhals 2-4

    SciTech Connect

    Pazsit, M.; Sunde, C.; Pazsit, I.

    2006-07-01

    Analysis of core-barrel vibrations in the Swedish Ringhals PWRs has been performed by Chalmers since the early 1990's. In the first phase of this work, between 1991 and 1998, the evaluation method has been developed such that it made a consistent comparison between different measurements possible. A trend analysis showed that the beam mode amplitudes have steadily increased between 1991 and 1998 in all three plants. This paper is to report on the second phase of the work, performed during 2005, on measurements made both before and after the summer outage 2005 in all three plants. During the summer outage, the hold-down spring in Ringhals-3 was replaced. The analysis shows that the vibration amplitudes increased in an accelerated rate between 1998 and 2005 in all three plants. In Ringhals 3, however, after the change of the hold-down spring, the beam mode amplitude has reverted to close its original level of 1991. It became also clear that the extraction of the information from the vibration peaks needs to be refined and made less subjective. A new method of algorithmic peak separation was elaborated, which supplies more information than the previous analysis; it gives also the peak width in addition to peak amplitude and peak frequency, while also supplying more accurate estimates for the latter two. (authors)

  7. Sensitive and simple flow injection analysis of formaldehyde using an activated barrel plating nickel electrode.

    PubMed

    Chen, Pei-Yen; Yangi, Hsueh-Hui; Zen, Jyh-Myng; Shih, Ying

    2011-01-01

    A flow injection analysis coupled with electrochemical detection at an activated barrel plating nickel electrode (Ni-BPE) was developed as a sensitive, simple, and low-cost formaldehyde sensor. The mechanism of Ni-BPE toward the electrocatalytic oxidation of formaldehyde in alkaline medium at ambient temperature was proposed to be based on the electrocatalytic oxidation of formaldehyde by Ni(III)O(OH) species. Under the optimized conditions (flow rate = 1.2 mL/min; detection potential = +0.5 V versus Ag/AgCl), a good linearity in the window of 0.037 to 10 microg/mL formaldehyde was observed, and the LOD of 0.23 microg/L was calculated. The RSDs of intraday (n = 10) and interday (n = 6) replicate measurements of 0.185-5 microg/mL formaldehyde ranged from 1.45 to 3.60%, indicating good reproducibility of the proposed method. The proposed method was successfully applied to the determination of formaldehyde in commercial nail polish samples and a drinking water sample. PMID:22165025

  8. Real-time million-synapse simulation of rat barrel cortex

    PubMed Central

    Sharp, Thomas; Petersen, Rasmus; Furber, Steve

    2014-01-01

    Simulations of neural circuits are bounded in scale and speed by available computing resources, and particularly by the differences in parallelism and communication patterns between the brain and high-performance computers. SpiNNaker is a computer architecture designed to address this problem by emulating the structure and function of neural tissue, using very many low-power processors and an interprocessor communication mechanism inspired by axonal arbors. Here we demonstrate that thousand-processor SpiNNaker prototypes can simulate models of the rodent barrel system comprising 50,000 neurons and 50 million synapses. We use the PyNN library to specify models, and the intrinsic features of Python to control experimental procedures and analysis. The models reproduce known thalamocortical response transformations, exhibit known, balanced dynamics of excitation and inhibition, and show a spatiotemporal spread of activity though the superficial cortical layers. These demonstrations are a significant step toward tractable simulations of entire cortical areas on the million-processor SpiNNaker machines in development. PMID:24910593

  9. [Testing Research of Transient Temperature Distribution for the Barrel Surface by Speckle Pattern Interferometry].

    PubMed

    Lang, Wen-jie; Chen, Guo-guang; Tian, Xiao-li; Xin, Chang-fan

    2016-02-01

    There are some problems in the traditional transient temperature test equipment. The thermal inertia is great, and can only be a single point of detection. To be able to achieve real-time monitoring for transient temperature distribution change of the gun body surface, the test system for transient temperature distribution was designed based on Speckle Pattern Interferometry (SPI) and spectroscopy. In the system, transient temperature change of the barrel led to slight deformation, and it was converted into speckle interference fringes by SPI technology. Spectral distribution function was obtained by the interference fringes by the Fourier transform, so the information of interference fringe deformation was incorporated into the frequency domain. The data of temperature distribution can be inverted on any sampling time by spectral distribution function. In experiments, the ZX-FB1 fiber optic thermometer was used to test transient temperature on a single point as the standard value. The center wavelength of the laser was 555 nm, and the speckle pattern interference fringes were collected by area array CCD. Image Recognition-Speckle Pattern Interferometry (IR-SPI) and Fourier Transform-Speckle Pattern Interferometry (FT-SPI) were used in experiments, the calculation of transient temperature was completed through two methods. Experimental results are that both methods can achieve transient temperature detection. But the FT-SPI is higher in terms of accuracy, and it can effectively overcome the gross error caused by the surface defects, paint wear and other similar problems.

  10. Characterization and Distribution of Reelin-Positive Interneuron Subtypes in the Rat Barrel Cortex

    PubMed Central

    Pohlkamp, Theresa; Dávid, Csaba; Cauli, Bruno; Gallopin, Thierry; Bouché, Elisabeth; Karagiannis, Anastassios; May, Petra; Herz, Joachim; Frotscher, Michael; Staiger, Jochen F.; Bock, Hans H.

    2014-01-01

    GABAergic inhibitory interneurons (IN) represent a heterogeneous population with different electrophysiological, morphological, and molecular properties. The correct balance between interneuronal subtypes is important for brain function and is impaired in several neurological and psychiatric disorders. Here we show the data of 123 molecularly and electrophysiologically characterized neurons of juvenile rat barrel cortex acute slices, 48 of which expressed Reelin (Reln). Reln mRNA was exclusively detected in Gad65/67-positive cells but was found in interneuronal subtypes in different proportions: all cells of the adapting-Somatostatin (SST) cluster expressed Reln, whereas 63% of the adapting-neuropeptide Y (NPY, 50% of the fast-spiking Parvalbumin (PVALB), and 27% of the adapting/bursting-Vasoactive Intestinal Peptide (VIP) cluster were Reln-positive. Silhouette analysis revealed a high impact of the parameter Reln on cluster quality. By analyzing the co-localization of RELN immunoreactivity with those of different IN-markers, we found that RELN is produced layer-independently in SST-, NPY-, and NOS1-expressing INs, whereas co-localization of RELN and VIP was mostly absent. Of note, RELN co-localized with PVALB, predominantly in INs of layers IV/V (>30%). Our findings emphasize RELN's role as an important IN-marker protein and provide a basis for the functional characterization of Reln-expressing INs and its role in the regulation of inhibitory IN networks. PMID:23803971

  11. Sensitive and simple flow injection analysis of formaldehyde using an activated barrel plating nickel electrode.

    PubMed

    Chen, Pei-Yen; Yangi, Hsueh-Hui; Zen, Jyh-Myng; Shih, Ying

    2011-01-01

    A flow injection analysis coupled with electrochemical detection at an activated barrel plating nickel electrode (Ni-BPE) was developed as a sensitive, simple, and low-cost formaldehyde sensor. The mechanism of Ni-BPE toward the electrocatalytic oxidation of formaldehyde in alkaline medium at ambient temperature was proposed to be based on the electrocatalytic oxidation of formaldehyde by Ni(III)O(OH) species. Under the optimized conditions (flow rate = 1.2 mL/min; detection potential = +0.5 V versus Ag/AgCl), a good linearity in the window of 0.037 to 10 microg/mL formaldehyde was observed, and the LOD of 0.23 microg/L was calculated. The RSDs of intraday (n = 10) and interday (n = 6) replicate measurements of 0.185-5 microg/mL formaldehyde ranged from 1.45 to 3.60%, indicating good reproducibility of the proposed method. The proposed method was successfully applied to the determination of formaldehyde in commercial nail polish samples and a drinking water sample.

  12. A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.

    PubMed

    Peron, Simon P; Freeman, Jeremy; Iyer, Vijay; Guo, Caiying; Svoboda, Karel

    2015-05-01

    Comprehensive measurement of neural activity remains challenging due to the large numbers of neurons in each brain area. We used volumetric two-photon imaging in mice expressing GCaMP6s and nuclear red fluorescent proteins to sample activity in 75% of superficial barrel cortex neurons across the relevant cortical columns, approximately 12,000 neurons per animal, during performance of a single whisker object localization task. Task-related activity peaked during object palpation. An encoding model related activity to behavioral variables. In the column corresponding to the spared whisker, 300 layer (L) 2/3 pyramidal neurons (17%) each encoded touch and whisker movements. Touch representation declined by half in surrounding columns; whisker movement representation was unchanged. Following the emergence of stereotyped task-related movement, sensory representations showed no measurable plasticity. Touch direction was topographically organized, with distinct organization for passive and active touch. Our work reveals sparse and spatially intermingled representations of multiple tactile features. VIDEO ABSTRACT. PMID:25913859

  13. A lipoprotein/β-barrel complex monitors lipopolysaccharide integrity transducing information across the outer membrane

    PubMed Central

    Konovalova, Anna; Mitchell, Angela M; Silhavy, Thomas J

    2016-01-01

    Lipoprotein RcsF is the OM component of the Rcs envelope stress response. RcsF exists in complexes with β-barrel proteins (OMPs) allowing it to adopt a transmembrane orientation with a lipidated N-terminal domain on the cell surface and a periplasmic C-terminal domain. Here we report that mutations that remove BamE or alter a residue in the RcsF trans-lumen domain specifically prevent assembly of the interlocked complexes without inactivating either RcsF or the OMP. Using these mutations we demonstrate that these RcsF/OMP complexes are required for sensing OM outer leaflet stress. Using mutations that alter the positively charged surface-exposed domain, we show that RcsF monitors lateral interactions between lipopolysaccharide (LPS) molecules. When these interactions are disrupted by cationic antimicrobial peptides, or by the loss of negatively charged phosphate groups on the LPS molecule, this information is transduced to the RcsF C-terminal signaling domain located in the periplasm to activate the stress response. DOI: http://dx.doi.org/10.7554/eLife.15276.001 PMID:27282389

  14. Health physics activities in support of the thermal shield removal/disposal and core support barrel repair at the St. Lucie Nuclear Power Plant

    SciTech Connect

    Maisler, J.J.; Buchanan, H.F.

    1988-02-01

    The health physics activities related to the removal and disposal of a thermal shield at a nuclear power plant and subsequent repairs to the core support barrel required increased planning relative to a normal refueling/maintenance outage. The repair of the core support barrel was a first in the nuclear power industry. Pre-job planning was of great concern because of extremely high radiation levels associated with the irradiated stainless steel thermal shield and core support barrel. ALARA techniques used in the preparation of the thermal shield for removal and shipment to the disposal site are discussed.

  15. Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI.

    PubMed

    Wu, Dan; Ma, Ting; Ceritoglu, Can; Li, Yue; Chotiyanonta, Jill; Hou, Zhipeng; Hsu, John; Xu, Xin; Brown, Timothy; Miller, Michael I; Mori, Susumu

    2016-01-15

    Technologies for multi-atlas brain segmentation of T1-weighted MRI images have rapidly progressed in recent years, with highly promising results. This approach, however, relies on a large number of atlases with accurate and consistent structural identifications. Here, we introduce our atlas inventories (n=90), which cover ages 4-82years with unique hierarchical structural definitions (286 structures at the finest level). This multi-atlas library resource provides the flexibility to choose appropriate atlases for various studies with different age ranges and structure-definition criteria. In this paper, we describe the details of the atlas resources and demonstrate the improved accuracy achievable with a dynamic age-matching approach, in which atlases that most closely match the subject's age are dynamically selected. The advanced atlas creation strategy, together with atlas pre-selection principles, is expected to support the further development of multi-atlas image segmentation. PMID:26499813

  16. Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI.

    PubMed

    Wu, Dan; Ma, Ting; Ceritoglu, Can; Li, Yue; Chotiyanonta, Jill; Hou, Zhipeng; Hsu, John; Xu, Xin; Brown, Timothy; Miller, Michael I; Mori, Susumu

    2016-01-15

    Technologies for multi-atlas brain segmentation of T1-weighted MRI images have rapidly progressed in recent years, with highly promising results. This approach, however, relies on a large number of atlases with accurate and consistent structural identifications. Here, we introduce our atlas inventories (n=90), which cover ages 4-82years with unique hierarchical structural definitions (286 structures at the finest level). This multi-atlas library resource provides the flexibility to choose appropriate atlases for various studies with different age ranges and structure-definition criteria. In this paper, we describe the details of the atlas resources and demonstrate the improved accuracy achievable with a dynamic age-matching approach, in which atlases that most closely match the subject's age are dynamically selected. The advanced atlas creation strategy, together with atlas pre-selection principles, is expected to support the further development of multi-atlas image segmentation.

  17. Man-In-The-Barrel. A Case of Cervical Spinal Cord Infarction and Review of the Literature

    PubMed Central

    Antelo, María José García; Facal, Teresa Lema; Sánchez, Tamara Pablos; Facal, María Soledad López; Nazabal, Eduardo Rubio

    2013-01-01

    Introduction: Man-in-the-barrel syndrome was initially observed in patients with signs of serious cerebral hypoperfusion, in the border zone of the anterior and medial cerebral artery, but other causes were communicated later. Methods: a healthy 43-year-old woman who showed intense cervical pain, irradiating over both shoulders and arms. Physical examination on admission highlighted notable brachial diparesis, tacto-algesic hypoesthesia of both arms and sensory level C4-D9. Results: cervical Magnetic Resonance Imaging (MRI) on admission revealed a hyperintense intramedullar lesion at C3-C7 level, due to a cervical cord infarction. Conclusions: our case reveals that conventional neurological consideration about the specific anatomical location of man-in-the-barrel syndrome in the brain should be extended to other locations such as the cervical column and not only the brain area. PMID:23407685

  18. Methods for Studying Interactions of Detergents and Lipids withα-Helical and β-Barrel Integral Membrane Proteins

    PubMed Central

    Hasan, S. Saif; Baniulis, Danas; Yamashita, Eiki; Zhalnina, Mariya V.; Zakharov, Stanislav D.; Stofleth, Jason T.; Cramer, William A.

    2014-01-01

    Methods for studying interactions of protein with lipids and detergents are described for representatives of two major classes of membrane proteins: (1) the α-helical heterooligomeric integral cytochrome b6f complex of oxygenic photosynthesis from cyanobacteria, and (2) the outer membrane β-barrel proteins BtuB and OmpF from Gram-negative Escherichia coli bacteria. Details are presented on the use of detergents for purification and crystallization of the b6f complex as well as a method for lipid exchange. The positions of detergent and lipid molecules, which define eight potential lipid-binding sites in the b6f complex, are described. Differences in detergent strategies for isolation and crystallization of β-barrel proteins relative to those for oligomeric helical membrane proteins are discussed, and purification and assessment of protein quality by circular dichroism (CD) is presented. PMID:24510648

  19. Purple Level - 1 Milestone Review Committee I/O and Archive Follow-up Demonstration

    SciTech Connect

    Gary, M R

    2006-12-05

    On July 7th 2006, the Purple Level-1 Review Committee convened and was presented with evidence of the completion of Level-2 Milestone 461 (Deploy First Phase of I/O Infrastructure for Purple) which was performed in direct support of the Purple Level-1 milestone. This evidence included a short presentation and the formal documentation of milestone No.461 (see UCRL-TR-217288). Following the meeting, the Committee asked for the following additional evidence: (1) Set a speed measurement/goal/target assuming a number of files that the user needs to get into the archives. Then redo the benchmark using whatever tool(s) the labs prefer (HTAR, for example). Document how long the process takes. (2) Develop a test to read files back to confirm that what the user gets out of the archive is what the user put into the archive. This evidence has been collected and is presented here.

  20. Level 1 Processing of MODIS Direct Broadcast Data at the GSFC DAAC

    NASA Technical Reports Server (NTRS)

    Lynnes, Christopher; Kempler, Steven J. (Technical Monitor)

    2001-01-01

    The GSFC DAAC is working to test and package the MODIS Level 1 Processing software for Aqua Direct Broadcast data. This entails the same code base, but different lookup tables for Aqua and Terra. However, the most significant change is the use of ancillary attitude and ephemeris files instead of orbit/attitude information within the science data stream (as with Terra). In addition, we are working on Linux: ports of the algorithms, which could eventually enable processing on PC clusters. Finally, the GSFC DAAC is also working with the GSFC Direct Readout laboratory to ingest Level 0 data from the GSFC DB antenna into the main DAAC, enabling level 1 production in near real time in support of applications users, such as the Synergy project. The mechanism developed for this could conceivably be extended to other participating stations.

  1. Design and Implementation of the New D0 Level-1 Calorimeter Trigger

    SciTech Connect

    Abolins, M.; Adams, M.; Adams, T.; Aguilo, E.; Anderson, J.; Bagby, L.; Ban, J.; Barberis, E.; Beale, S.; Benitez, J.; Biehl, J.; /Columbia U. /DAPNIA, Saclay /Delhi U. /Fermilab /Florida State U. /Indiana U. /Michigan State U. /Northeastern U. /Rice U. /Southern Methodist U. /University Coll., Dublin

    2007-09-01

    Increasing luminosity at the Fermilab Tevatron collider has led the D0 collaboration to make improvements to its detector beyond those already in place for Run IIa, which began in March 2001. One of the cornerstones of this Run IIb upgrade is a completely redesigned level-1 calorimeter trigger system. The new system employs novel architecture and algorithms to retain high efficiency for interesting events while substantially increasing rejection of background. We describe the design and implementation of the new level-1 calorimeter trigger hardware and discuss its performance during Run IIb data taking. In addition to strengthening the physics capabilities of D0, this trigger system will provide valuable insight into the operation of analogous devices to be used at LHC experiments.

  2. The Y-shaped double-barrel bypass in the treatment of large and giant anterior communicating artery aneurysms.

    PubMed

    Dengler, Julius; Kato, Naoki; Vajkoczy, Peter

    2013-02-01

    Large and giant anterior communicating artery (ACoA) aneurysms usually show partial thrombosis and incorporate both the A(1) and A(2) segments and crucial perforating vessels. Therefore, direct clip placement or endovascular strategies often fail, leaving cerebral bypass surgery as a relevant therapeutic option. The authors present 3 cases in which a giant or large ACoA aneurysm was successfully occluded using a new technique that applies a double-barrel radial artery bypass. A radial artery graft is modified into a Y-shaped double-barrel conduit. After both pterional and parasagittal craniotomies are carried out, the graft is tunneled between both sites and anastomosed in an end-to-side fashion proximally to either a superficial temporal artery (STA) or M(2) branch and distally to bilateral A(3) branches. Aneurysm occlusion is then conducted through the pterional or parasagittal craniotomy. In one case, a 42-year-old patient in whom an endovascular approach had failed, the authors performed an STA-A(3)-A(3) bypass and proximal aneurysm occlusion. In two others, a 49-year-old man in whom coiling had failed and a 56-year-old man in whom a giant ACoA aneurysm was partially thrombosed, the authors performed an M(2)-A(3)-A(3) double-barrel bypass followed by either proximal or distal aneurysm occlusion. Complete aneurysm occlusion with excellent bypass perfusion was documented in the first two cases. In the third case, the authors observed good bypass perfusion with persistent antegrade aneurysm filling, and thus endovascular coil embolization was added to completely occlude the aneurysm. The Y-shaped double-barrel bypass using a radial artery graft allows for safe and effective occlusion of large and giant ACoA aneurysms that cannot be treated by direct clip application. PMID:23216465

  3. Level 1B products from the Atmospheric Infrared Sounder (AIRS) on the EOS Aqua Spacecraft

    NASA Technical Reports Server (NTRS)

    Pagano, Thomas S.; Aumann, H. H.; Overoye, Ken

    2003-01-01

    The Atmospheric Infrared Sounder (AIRS) was launched May 4, 2002 on the EOS Aqua Spacecraft. A discussion is given of the objectives of the AIRS experiment, including requirements on the data products. We summarize the instrument characteristics, including sensitivity, noise, and spectral response, and preflight calibration results leading to the estimate of the calibration accuracy. The Level 1B calibration algorithm is presented as well as the results of in-flight stability and sensitivity measurements.

  4. Gpm Level 1 Science Requirements: Science and Performance Viewed from the Ground

    NASA Technical Reports Server (NTRS)

    Petersen, W.; Kirstetter, P.; Wolff, D.; Kidd, C.; Tokay, A.; Chandrasekar, V.; Grecu, M.; Huffman, G.; Jackson, G. S.

    2016-01-01

    GPM meets Level 1 science requirements for rain estimation based on the strong performance of its radar algorithms. Changes in the V5 GPROF algorithm should correct errors in V4 and will likely resolve GPROF performance issues relative to L1 requirements. L1 FOV Snow detection largely verified but at unknown SWE rate threshold (likely < 0.5 –1 mm/hr/liquid equivalent). Ongoing work to improve SWE rate estimation for both satellite and GV remote sensing.

  5. Nimbus 7 Coastal Zone Color Scanner (CZCS). Level 1 data product users' guide

    NASA Technical Reports Server (NTRS)

    Williams, S. P.; Szajna, E. F.; Hovis, W. A.

    1985-01-01

    The coastal zone color scanner (CZCS) is a scanning multispectral radiometer designed specifically for the remote sensing of Ocean Color parameters from an Earth orbiting space platform. A technical manual which is intended for users of NIMBUS 7 CZCS Level 1 data products is presented. It contains information needed by investigators and data processing personnel to operate on the data using digital computers and related equipment.

  6. BOREAS RSS-2 Level-1B ASAS Image Data: At-Sensor Radiance in BSQ Format

    NASA Technical Reports Server (NTRS)

    Russell, C.; Hall, Forrest G. (Editor); Nickeson, Jaime (Editor); Dabney, P. W.; Kovalick, W.; Graham, D.; Bur, Michael; Irons, James R.; Tierney, M.

    2000-01-01

    The BOREAS RSS-2 team used the ASAS instrument, mounted on the NASA C-130 aircraft, to create at-sensor radiance images of various sites as a function of spectral wavelength, view geometry (combinations of view zenith angle, view azimuth angle, solar zenith angle, and solar azimuth angle), and altitude. The level-1b ASAS images of the BOREAS study areas were collected from April to September 1994 and March to July 1996.

  7. Level-3 Calorimetric Resolution available for the Level-1 and Level-2 CDF Triggers

    SciTech Connect

    Canepa, Anadi; Casarsa, M.; Cavaliere, V.; Cortiana, Giorgio; Donati, S.; Flanagan, G.; Greco, V.; Giannetti, P.; Frisch, H.; Krop, D.; Liu, T.; /Fermilab /INFN, Pisa

    2008-06-01

    As the Tevatron luminosity increases sophisticated selections are required to be efficient in selecting rare events among a very huge background. To cope with this problem, CDF has pushed the offline calorimeter algorithm reconstruction resolution up to Level 2 and, when possible, even up to Level 1, increasing efficiency and, at the same time, keeping under control the rates. The CDF Run II Level 2 calorimeter trigger is implemented in hardware and is based on a simple algorithm that was used in Run I. This system has worked well for Run II at low luminosity. As the Tevatron instantaneous luminosity increases, the limitation due to this simple algorithm starts to become clear: some of the most important jet and MET (Missing ET) related triggers have large growth terms in cross section at higher luminosity. In this paper, we present an upgrade of the Level 2 Calorimeter system which makes the calorimeter trigger tower information available directly to a CPU allowing more sophisticated algorithms to be implemented in software. Both Level 2 jets and MET can be made nearly equivalent to offline quality, thus significantly improving the performance and flexibility of the jet and MET related triggers. However in order to fully take advantage of the new L2 triggering capabilities having at Level 1 the same L2 MET resolution is necessary. The new Level-1 MET resolution is calculated by dedicated hardware. This paper describes the design, the hardware and software implementation and the performance of the upgraded calorimeter trigger system both at Level 2 and Level 1.

  8. Using SAS PROC CALIS to fit Level-1 error covariance structures of latent growth models.

    PubMed

    Ding, Cherng G; Jane, Ten-Der

    2012-09-01

    In the present article, we demonstrates the use of SAS PROC CALIS to fit various types of Level-1 error covariance structures of latent growth models (LGM). Advantages of the SEM approach, on which PROC CALIS is based, include the capabilities of modeling the change over time for latent constructs, measured by multiple indicators; embedding LGM into a larger latent variable model; incorporating measurement models for latent predictors; and better assessing model fit and the flexibility in specifying error covariance structures. The strength of PROC CALIS is always accompanied with technical coding work, which needs to be specifically addressed. We provide a tutorial on the SAS syntax for modeling the growth of a manifest variable and the growth of a latent construct, focusing the documentation on the specification of Level-1 error covariance structures. Illustrations are conducted with the data generated from two given latent growth models. The coding provided is helpful when the growth model has been well determined and the Level-1 error covariance structure is to be identified.

  9. Development and methodology of level 1 probability safety assessment at PUSPATI TRIGA Reactor

    NASA Astrophysics Data System (ADS)

    Maskin, Mazleha; Tom, Phongsakorn Prak; Lanyau, Tonny Anak; Brayon, Fedrick Charlie Matthew; Mohamed, Faizal; Saad, Mohamad Fauzi; Ismail, Ahmad Razali; Abu, Mohamad Puad Haji

    2014-02-01

    As a consequence of the accident at the Fukushima Dai-ichi Nuclear Power Plant in Japan, the safety aspects of the one and only research reactor (31 years old) in Malaysia need be reviewed. Based on this decision, Malaysian Nuclear Agency in collaboration with Atomic Energy Licensing Board and Universiti Kebangsaan Malaysia develop a Level-1 Probability Safety Assessment on this research reactor. This work is aimed to evaluate the potential risks of incidents in RTP and at the same time to identify internal and external hazard that may cause any extreme initiating events. This report documents the methodology in developing a Level 1 PSA performed for the RTP as a complementary approach to deterministic safety analysis both in neutronics and thermal hydraulics. This Level-1 PSA work has been performed according to the procedures suggested in relevant IAEA publications and at the same time numbers of procedures has been developed as part of an Integrated Management System programme implemented in Nuclear Malaysia.

  10. Development and methodology of level 1 probability safety assessment at PUSPATI TRIGA Reactor

    SciTech Connect

    Maskin, Mazleha; Tom, Phongsakorn Prak; Lanyau, Tonny Anak; Saad, Mohamad Fauzi; Ismail, Ahmad Razali; Abu, Mohamad Puad Haji; Brayon, Fedrick Charlie Matthew; Mohamed, Faizal

    2014-02-12

    As a consequence of the accident at the Fukushima Dai-ichi Nuclear Power Plant in Japan, the safety aspects of the one and only research reactor (31 years old) in Malaysia need be reviewed. Based on this decision, Malaysian Nuclear Agency in collaboration with Atomic Energy Licensing Board and Universiti Kebangsaan Malaysia develop a Level-1 Probability Safety Assessment on this research reactor. This work is aimed to evaluate the potential risks of incidents in RTP and at the same time to identify internal and external hazard that may cause any extreme initiating events. This report documents the methodology in developing a Level 1 PSA performed for the RTP as a complementary approach to deterministic safety analysis both in neutronics and thermal hydraulics. This Level-1 PSA work has been performed according to the procedures suggested in relevant IAEA publications and at the same time numbers of procedures has been developed as part of an Integrated Management System programme implemented in Nuclear Malaysia.

  11. BOREAS RSS-14 Level-1 GOES-7 Visible, IR and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Faysash, David; Cooper, Harry J.; Smith, Eric A.; Newcomer, Jeffrey A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed GOES-7 and -8 images of the BOREAS region as part of its effort to characterize the incoming, reflected, and emitted radiation at regional scales. The level-1 BOREAS GOES-7 image data were collected by RSS-14 personnel at FSU and delivered to BORIS. The data cover the period of 01-Jan-1994 through 08-Jul-1995, with partial to complete coverage on the majority of the days. The data include three bands with eight-bit pixel values. No major problems with the data have been identified. Due to the large size of the images, the level-1 GOES-7 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1 GOES-7 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  12. BOREAS RSS-14 Level-1 GOES-8 Visible, IR and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Faysash, David; Cooper, Harry J.; Smith, Eric A.; Newcomer, Jeffrey A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed several GOES-7 and GOES-8 image data sets that covered the BOREAS study region. The level-1 BOREAS GOES-8 images are raw data values collected by RSS-14 personnel at FSU and delivered to BORIS. The data cover 14-Jul-1995 to 21-Sep-1995 and 01-Jan-1996 to 03-Oct-1996. The data start out containing three 8-bit spectral bands and end up containing five 10-bit spectral bands. No major problems with the data have been identified. The data are contained in binary image format files. Due to the large size of the images, the level-1 GOES-8 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1 GOES-8 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  13. GroEL/ES chaperonin modulates the mechanism and accelerates the rate of TIM-barrel domain folding.

    PubMed

    Georgescauld, Florian; Popova, Kristina; Gupta, Amit J; Bracher, Andreas; Engen, John R; Hayer-Hartl, Manajit; Hartl, F Ulrich

    2014-05-01

    The GroEL/ES chaperonin system functions as a protein folding cage. Many obligate substrates of GroEL share the (βα)8 TIM-barrel fold, but how the chaperonin promotes folding of these proteins is not known. Here, we analyzed the folding of DapA at peptide resolution using hydrogen/deuterium exchange and mass spectrometry. During spontaneous folding, all elements of the DapA TIM barrel acquire structure simultaneously in a process associated with a long search time. In contrast, GroEL/ES accelerates folding more than 30-fold by catalyzing segmental structure formation in the TIM barrel. Segmental structure formation is also observed during the fast spontaneous folding of a structural homolog of DapA from a bacterium that lacks GroEL/ES. Thus, chaperonin independence correlates with folding properties otherwise enforced by protein confinement in the GroEL/ES cage. We suggest that folding catalysis by GroEL/ES is required by a set of proteins to reach native state at a biologically relevant timescale, avoiding aggregation or degradation.

  14. The crystal structure of human glycosylation-inhibiting factor is a trimeric barrel with three 6-stranded beta-sheets.

    PubMed Central

    Kato, Y; Muto, T; Tomura, T; Tsumura, H; Watarai, H; Mikayama, T; Ishizaka, K; Kuroki, R

    1996-01-01

    Glycosylation-inhibiting factor (GIF) is a cytokine that is involved in the regulation of IgE synthesis. The crystal structure of recombinant human GIF was determined by the multiple isomorphous replacement method. The structure was refined to an R factor of 0.168 at 1.9 angstrom resolution. The overall structure is seen to consist of three interconnected subunits forming a barrel with three 6-stranded beta-sheets on the inside and six alpha-helices on the outside. There is a 5-angstrom-diameter "hole" through the middle of the barrel. The barrel structure of GIF in part resembles other "trefoil" cytokines such as interleukin 1 and fibroblast growth factor. Each subunit has a new class of alpha + beta sandwich structure consisting of two beta-alpha-beta motifs. These beta-alpha-beta motifs are related by a pseudo-twofold axis and resemble both interleukin 8 and the peptide binding domain of major histocompatibility complex protein, although the topology of the polypeptide chain is quite different. Images Fig. 1 Fig. 3 PMID:8610159

  15. Using BARREL as part of the Heliophysics System Observatory to Probe the Microphysics and Global Properties of Energetic Electron Precipitation

    NASA Astrophysics Data System (ADS)

    Millan, R. M.

    2015-12-01

    In the inner magnetosphere where the plasmasphere, ring current and radiation belts co-exist, energy and momentum are exchanged between different plasma populations by plasma waves. Resonant interaction with these waves can lead to rapid loss of radiation belt and ring current electrons to the atmosphere. Recent work is rapidly expanding our understanding of energetic (~20 keV - 10 MeV) electron precipitation. In particular, the combination of BARREL multi-point balloon measurements with measurements from equatorial spacecraft (e.g. Van Allen Probes, LANL, THEMIS, GOES), LEO spacecraft (e.g. POES, CSSWE), and ground-based instruments (e.g. riometer, VLF) is providing a unique opportunity to study wave-particle interactions, and to quantify the spatial scale of energetic precipitation. We present a summary of recent results from BARREL combined with in situ measurements to quantitatively test models of wave-particle interactions. We also show combined BARREL and ground-based data that probes the spatial structure and evolution of relativistic precipitation.

  16. Increases in the Numerical Density of GAT-1 Positive Puncta in the Barrel Cortex of Adult Mice after Fear Conditioning

    PubMed Central

    Siucinska, Ewa; Hamed, Adam; Jasinska, Malgorzata

    2014-01-01

    Three days of fear conditioning that combines tactile stimulation of a row of facial vibrissae (conditioned stimulus, CS) with a tail shock (unconditioned stimulus, UCS) expands the representation of “trained” vibrissae, which can be demonstrated by labeling with 2-deoxyglucose in layer IV of the barrel cortex. We have also shown that functional reorganization of the primary somatosensory cortex (S1) increases GABAergic markers in the hollows of “trained” barrels of the adult mouse. This study investigated how whisker-shock conditioning (CS+UCS) affected the expression of puncta of a high-affinity GABA plasma membrane transporter GAT-1 in the barrel cortex of mice 24 h after associative learning paradigm. We found that whisker-shock conditioning (CS+UCS) led to increase expression of neuronal and astroglial GAT-1 puncta in the “trained” row compared to controls: Pseudoconditioned, CS-only, UCS-only and Naïve animals. These findings suggest that fear conditioning specifically induces activation of systems regulating cellular levels of the inhibitory neurotransmitter GABA. PMID:25333489

  17. Fear learning increases the number of polyribosomes associated with excitatory and inhibitory synapses in the barrel cortex.

    PubMed

    Jasinska, Malgorzata; Siucinska, Ewa; Jasek, Ewa; Litwin, Jan A; Pyza, Elzbieta; Kossut, Malgorzata

    2013-01-01

    Associative fear learning, resulting from whisker stimulation paired with application of a mild electric shock to the tail in a classical conditioning paradigm, changes the motor behavior of mice and modifies the cortical functional representation of sensory receptors involved in the conditioning. It also induces the formation of new inhibitory synapses on double-synapse spines of the cognate barrel hollows. We studied density and distribution of polyribosomes, the putative structural markers of enhanced synaptic activation, following conditioning. By analyzing serial sections of the barrel cortex by electron microscopy and stereology, we found that the density of polyribosomes was significantly increased in dendrites of the barrel activated during conditioning. The results revealed fear learning-induced increase in the density of polyribosomes associated with both excitatory and inhibitory synapses located on dendritic spines (in both single- and double-synapse spines) and only with the inhibitory synapses located on dendritic shafts. This effect was accompanied by a significant increase in the postsynaptic density area of the excitatory synapses on single-synapse spines and of the inhibitory synapses on double-synapse spines containing polyribosomes. The present results show that associative fear learning not only induces inhibitory synaptogenesis, as demonstrated in the previous studies, but also stimulates local protein synthesis and produces modifications of the synapses that indicate their potentiation.

  18. A new intraretinal recording system with multiple-barreled electrodes for pharmacological studies on cat retinal ganglion cells.

    PubMed

    Takao, M; Wang1, Y; Miyoshi, T; Fujita, I; Fukuda, Y

    2000-04-01

    To overcome technical difficulties associated with in vivo intraretinal recordings of cat retinal ganglion cells (RGCs) with multiple-barreled electrodes, we developed a new guide-trocar system that consisted of a small-diameter and large-diameter pipes. We also improved the method to construct tungsten-in-glass multiple-barreled electrodes suitable for intraretinal recording from RGCs. Only the small-diameter pipe was inserted into the eye ball through the sclera, through which only the taper part of a multiple-barreled electrode pass. The large-diameter pipe stably held the electrode at its trunk and remained outside the eye ball. Insertion of only the small-diameter pipe minimized damages in the eye ball and prevented the eye ball movements while positioning the electrode. The system allowed us to keep the recordings stable for more than 1 h. Iontophoretically applied L-glutamate successfully activated RGCs of both X and Y types in the cat retina. PMID:10771079

  19. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels

    PubMed Central

    Waldispühl, J.; Berger, Bonnie; Clote, Peter; Steyaert, Jean-Marc

    2006-01-01

    Transmembrane β-barrel (TMB) proteins are embedded in the outer membrane of Gram-negative bacteria, mitochondria and chloroplasts. The cellular location and functional diversity of β-barrel outer membrane proteins makes them an important protein class. At the present time, very few non-homologous TMB structures have been determined by X-ray diffraction because of the experimental difficulty encountered in crystallizing transmembrane (TM) proteins. The transFold web server uses pairwise inter-strand residue statistical potentials derived from globular (non-outer-membrane) proteins to predict the supersecondary structure of TMB. Unlike all previous approaches, transFold does not use machine learning methods such as hidden Markov models or neural networks; instead, transFold employs multi-tape S-attribute grammars to describe all potential conformations, and then applies dynamic programming to determine the global minimum energy supersecondary structure. The transFold web server not only predicts secondary structure and TMB topology, but is the only method which additionally predicts the side-chain orientation of transmembrane β-strand residues, inter-strand residue contacts and TM β-strand inclination with respect to the membrane. The program transFold currently outperforms all other methods for accuracy of β-barrel structure prediction. Available at . PMID:16844989

  20. ATLAS LAr calorimeter performance and LHC Run-2 commissioning

    NASA Astrophysics Data System (ADS)

    Spettel, Fabian

    2016-07-01

    The ATLAS detector was built to study proton-proton collisions produced by the Large Hadron Collider (LHC) at a center of mass energy of up to 14 TeV. The Liquid Argon (LAr) calorimeters are used for all electromagnetic calorimetry as well as the hadronic calorimetry in the endcap and forward regions. They have shown excellent performance during the first LHC data taking campaign, from 2010 to 2012, so-called Run 1, at a peak luminosity of 8 ×1033cm-2s-1. During the next run, peak luminosities of 1.5 ×1034cm-2s-1 and even higher are expected at a 25 ns bunch spacing. Such a high collision rate may have an impact on the quality of the energy reconstruction which is attempted to be maintained at a high level using a calibration procedure described in this contribution. It also poses major challenges to the first level of the trigger system which is constrained to a maximal rate of 100 kHz. For Run-3, scheduled to start in 2019, instantaneous luminosity as high as 3 ×1034cm-2s-1 are foreseen imposing an upgrade of the LAr trigger system to maintain its performance. A demonstrator containing prototypes of the upgraded trigger electronic architecture has been installed on one of the barrel electromagnetic calorimeter readout front end crates to test it during the Run-2 campaign. The new architecture and its benefits for data taking will be discussed below as well as the results from first beam splash events.