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Sample records for atlas level-1 barrel

  1. The CMS Level-1 Trigger Barrel Track Finder

    NASA Astrophysics Data System (ADS)

    Ero, J.; Evangelou, I.; Flouris, G.; Foudas, C.; Guiducci, L.; Loukas, N.; Manthos, N.; Papadopoulos, I.; Paradas, E.; Sotiropoulos, S.; Sphicas, P.; Triossi, A.; Wulz, C.

    2016-03-01

    The design and performance of the upgraded CMS Level-1 Trigger Barrel Muon Track Finder (BMTF) is presented. Monte Carlo simulation data as well as cosmic ray data from a CMS muon detector slice test have been used to study in detail the performance of the new track finder. The design architecture is based on twelve MP7 cards each of which uses a Xilinx Virtex-7 FPGA and can receive and transmit data at 10 Gbps from 72 input and 72 output fibers. According to the CMS Trigger Upgrade TDR the BMTF receives trigger primitive data which are computed using both RPC and DT data and transmits data from a number of muon candidates to the upgraded Global Muon Trigger. Results from detailed studies of comparisons between the BMTF algorithm results and the results of a C++ emulator are also presented. The new BMTF will be commissioned for data taking in 2016.

  2. Performance of the ATLAS electromagnetic calorimeter barrel module 0

    NASA Astrophysics Data System (ADS)

    Aubert, B.; Ballansat, J.; Bazan, A.; Beaugiraud, B.; Boniface, J.; Chollet, F.; Colas, J.; Delebecque, P.; di Ciaccio, L.; Dumont-Dayot, N.; El Kacimi, M.; Gaumer, O.; Ghez, P.; Girard, C.; Gouanère, M.; Kambara, H.; Jérémie, A.; Jézéquel, S.; Lafaye, R.; Leflour, T.; Le Maner, C.; Lesueur, J.; Massol, N.; Moynot, M.; Neukermans, L.; Perrodo, P.; Perrot, G.; Poggioli, L.; Prast, J.; Przysiezniak, H.; Riccadona, X.; Sauvage, G.; Thion, J.; Wingerter-Seez, I.; Zitoun, R.; Zolnierowski, Y.; Chen, H.; Citterio, M.; Farrell, J.; Gordon, H.; Hackenburg, B.; Hoffman, A.; Kierstead, J.; Lanni, F.; Leite, M.; Lissauer, D.; Ma, H.; Makowiecki, D.; Radeka, V.; Rahm, D.; Rajagopalan, S.; Rescia, S.; Stumer, I.; Takai, H.; Yip, K.; Benchekroun, D.; Driouichi, C.; Hoummada, A.; Hakimi, M.; Stroynowski, R.; Ye, J.; Beck Hansen, J.; Belymam, A.; Bremer, J.; Chevalley, J. L.; Fassnacht, P.; Gianotti, F.; Hervas, L.; Marin, C. P.; Pailler, P.; Schilly, P.; Seidl, W.; Vossebeld, J.; Vuillemin, V.; Clark, A.; Efthymiopoulos, I.; Moneta, L.; Belhorma, B.; Collot, J.; de Saintignon, P.; Dzahini, D.; Ferrari, A.; Gallin-Martel, M. L.; Hostachy, J. Y.; Martin, P.; Muraz, J. F.; Ohlsson-Malek, F.; Saboumazrag, S.; Ban, J.; Cartiglia, N.; Cunitz, H.; Dodd, J.; Gara, A.; Leltchouk, M.; Negroni, S.; Parsons, J. A.; Seman, M.; Simion, S.; Sippach, W.; Willis, W.; Barreiro, F.; Garcia, G.; Labarga, L.; Rodier, S.; Del Peso, J.; Alexa, C.; Barrillon, P.; Benchouk, C.; Chekhtman, A.; Dinkespiler, B.; Djama, F.; Duval, P. Y.; Henry-Couannier, F.; Hinz, L.; Jevaud, M.; Karst, P.; Le van Suu, A.; Martin, L.; Martin, O.; Mirea, A.; Monnier, E.; Nagy, E.; Nicod, D.; Olivier, C.; Pralavorio, P.; Repetti, B.; Raymond, M.; Sauvage, D.; Tisserant, S.; Toth, J.; Wielers, M.; Battistoni, G.; Bonivento, W.; Carminati, L.; Cavalli, D.; Costa, G.; Delmastro, M.; Fanti, M.; Mandelli, L.; Mazzanti, M.; Perini, L.; Resconi, S.; Tartarelli, G. F.; Aulchenko, V.; Kazanin, V.; Kolachev, G.; Malyshev, V.; Maslennikov, A.; Pospelov, G.; Snopkov, R.; Shousharo, A.; Talyshev, A.; Tikhonov, Yu.; Augé, E.; Bourdarios, C.; Breton, D.; Cros, P.; de La Taille, C.; Falleau, I.; Fournier, D.; Guilhem, G.; Hassani, S.; Jacquier, Y.; Kordas, K.; Macé, G.; Merkel, B.; Noppe, J. M.; Parrour, G.; Pétroff, P.; Puzo, P.; Richer, J. P.; Rousseau, D.; Seguin-Moreau, N.; Serin, L.; Tocut, V.; Veillet, J. J.; Zerwas, D.; Astesan, F.; Bertoli, W.; Camard, A.; Canton, B.; Fichet, S.; Hubaut, F.; Imbault, D.; Lacour, D.; Laforge, B.; Le Dortz, O.; Martin, D.; Nikolic-Audit, I.; Orsini, F.; Rossel, F.; Schwemling, P.; Cleland, W.; McDonald, J.; Abouelouafa, E. M.; Ben Mansour, A.; Cherkaoui, R.; El Mouahhidi, Y.; Ghazlane, H.; Idrissi, A.; Belorgey, J.; Bernard, R.; Chalifour, M.; Le Coroller, A.; Ernwein, J.; Mansoulié, B.; Renardy, J. F.; Schwindling, J.; Taguet, J.-P.; Teiger, J.; Clément, C.; Lund-Jensen, B.; Lundqvist, J.; Megner, L.; Pearce, M.; Rydstrom, S.; Egdemir, J.; Engelmann, R.; Hoffman, J.; McCarthy, R.; Rijssenbeek, M.; Steffens, J.; Atlas Electromagnetic Liquid Argon Calorimeter Group

    2003-03-01

    The construction and performance of the barrel pre-series module 0 of the future ATLAS electromagnetic calorimeter at the LHC is described. The signal reconstruction and performance of ATLAS-like electronics has been studied. The signal to noise ratio for muons has been found to be 7.11±0.07. An energy resolution of better than 9.5% GeV1/2/ E (sampling term) has been obtained with electron beams of up to 245 GeV. The uniformity of the response to electrons in an area of Δ η×Δ φ=1.2×0.075 has been measured to be better than 0.8%.

  3. Operation of the Upgraded ATLAS Level-1 Central Trigger System

    NASA Astrophysics Data System (ADS)

    Glatzer, Julian

    2015-12-01

    The ATLAS Level-1 Central Trigger (L1CT) system is a central part of ATLAS data-taking and has undergone a major upgrade for Run 2 of the LHC, in order to cope with the expected increase of instantaneous luminosity of a factor of two with respect to Run 1. The upgraded hardware offers more flexibility in the trigger decisions due to the factor of two increase in the number of trigger inputs and usable trigger channels. It also provides an interface to the new topological trigger system. Operationally - particularly useful for commissioning, calibration and test runs - it allows concurrent running of up to three different subdetector combinations. An overview of the operational software framework of the L1CT system with particular emphasis on the configuration, controls and monitoring aspects is given. The software framework allows a consistent configuration with respect to the ATLAS experiment and the LHC machine, upstream and downstream trigger processors, and the data acquisition system. Trigger and dead-time rates are monitored coherently at all stages of processing and are logged by the online computing system for physics analysis, data quality assurance and operational debugging. In addition, the synchronisation of trigger inputs is watched based on bunch-by-bunch trigger information. Several software tools allow for efficient display of the relevant information in the control room in a way useful for shifters and experts. The design of the framework aims at reliability, flexibility, and robustness of the system and takes into account the operational experience gained during Run 1. The Level-1 Central Trigger was successfully operated with high efficiency during the cosmic-ray, beam-splash and first Run 2 data taking with the full ATLAS detector.

  4. ATLAS level-1 calorimeter trigger: Monitoring and data reprocessing

    NASA Astrophysics Data System (ADS)

    Dimond, David; Hong, Tae; Carlson, Benjamin; Atlas Collaboration

    2017-01-01

    We present the monitoring and data reprocessing for the calorimeter-based hardware level-1 trigger system (L1Calo) for the ATLAS experiment. This trigger system was upgraded after the Run-1 data taking period (2009-2012) to prepare for Run-2 (2015-current), which allowed better control the event rates for algorithms based on jets and/or missing energy. Monitoring tools for the upgraded system is described. We also present a new offline tool to reprocess previous data samples with altered L1Calo settings, such as calibration constants and noise cuts. The samples are used to study the dependence of the event rates and signal efficiencies on the settings. The studies can help plan the appropriate L1Calo settings for upcoming data taking periods as well as for future runs.

  5. L1Track: A fast Level 1 track trigger for the ATLAS high luminosity upgrade

    NASA Astrophysics Data System (ADS)

    Cerri, Alessandro

    2016-07-01

    With the planned high-luminosity upgrade of the LHC (HL-LHC), the ATLAS detector will see its collision rate increase by approximately a factor of 5 with respect to the current LHC operation. The earliest hardware-based ATLAS trigger stage ("Level 1") will have to provide a higher rejection factor in a more difficult environment: a new improved Level 1 trigger architecture is under study, which includes the possibility of extracting with low latency and high accuracy tracking information in time for the decision taking process. In this context, the feasibility of potential approaches aimed at providing low-latency high-quality tracking at Level 1 is discussed.

  6. The Common Cryogenic Test Facility for the ATLAS Barrel and End-Cap Toroid Magnets

    SciTech Connect

    Delruelle, N.; Haug, F.; Junker, S.; Passardi, G.; Pengo, R.; Pirotte, O.

    2004-06-23

    The large ATLAS toroidal superconducting magnet made of the Barrel and two End-Caps needs extensive testing at the surface of the individual components prior to their final assembly into the underground cavern of LHC. A cryogenic test facility specifically designed for cooling sequentially the eight coils making the Barrel Toroid (BT) has been fully commissioned and is now ready for final acceptance of these magnets. This facility, originally designed for testing individually the 46 tons BT coils, will be upgraded to allow the acceptance tests of the two End-Caps, each of them having a 160 tons cold mass. The integrated system mainly comprises a 1.2 kW at 4.5 K refrigerator, a 10 kW liquid-nitrogen precooler, two cryostats housing liquid helium centrifugal pumps of respectively 80 g/s and 600 g/s nominal flow and specific instrumentation to measure the thermal performances of the magnets. This paper describes the overall facility with particular emphasis to the cryogenic features adopted to match the specific requirements of the magnets in the various operating scenarios.

  7. ATLAS level-1 calorimeter trigger: Run-2 performance and Phase-1 upgrades

    NASA Astrophysics Data System (ADS)

    Carlson, Ben; Hong, Tae Min; Atlas Collaboration

    2017-01-01

    The Run-2 performance and Phase-1 upgrade are presented for the hardware-based level-1 calorimeter trigger (L1Calo) for the ATLAS Experiment. This trigger has a latency of about 2.2 microseconds to make a decision to help ATLAS select about 100 kHz of the most interesting collisions from the nominal LHC rate of 40 MHz. We summarize the upgrade after Run-1 (2009-2012) and discuss its performance in Run-2 (2015-current). We also outline the on-going Phase-1 upgrade for the next run (2021-2024) and its expected performance.

  8. Upgrade of the PreProcessor system for the ATLAS level-1 calorimeter trigger

    NASA Astrophysics Data System (ADS)

    Khomich, A.

    2010-12-01

    The ATLAS Level-1 Calorimeter Trigger is a hardware-based pipelined system designed to identify high-PT objects in the ATLAS calorimeters within a fixed latency of 2.5 us. It consists of three subsystems: the PreProcessor which conditions and digitises analogue signals and two digital processors. The majority of the PreProcessor's tasks are performed on a dense Multi-Chip Module(MCM) consisting of FADCs, a time-adjustment and digital processing ASICs, and LVDS serialisers designed and implemented in ten year old technologies. An MCM substitute, based on today's components (dual channel FADCs and FPGA), is being developed to enhance the flexibility of the digital processing and to profit from state-of-the-art electronics. The development and first test results are presented.

  9. The upgrade of the PreProcessor system of the ATLAS level-1 calorimeter trigger

    NASA Astrophysics Data System (ADS)

    Andrei, V.; Hanke, P.; Jongmanns, J.; Khomich, A.; Meier, K.; Schmitt, K.; Schultz-Coulon, H.-C.; Stamen, R.; Stock, P.; Wessels, M.

    2012-12-01

    The ATLAS Level-1 Calorimeter Trigger is a pipelined system to identify high-pT objects and to build energy sums within a fixed latency of ~ 2 μs. It consists of a PreProcessor, which conditions and digitises analogue calorimeter signals, and two object-finding processors. The PreProcessor's tasks are implemented on a Multi-Chip Module, holding ADCs, time-adjustment and digital processing ASICs, and LVDS serialisers. A pin-compatible substitute, based on today's technology, like dual-channel ADCs and FPGAs, has been built to improve the BCID and pedestal subtraction algorithms. Test results with the first prototype are presented.

  10. Production summary for extended barrel module fabrication at Argonne for the ATLAS tile calorimeter.

    SciTech Connect

    Guarino, V.; Hill, N.; Petereit, E.; Skrzecz, F.; Wood, K.; Proudfoot, J.; Anderson, S.; Caird, A.; Keyser, C.; Kocenko, L.; Matijas, Z.; Nephew, T.; Stanek, R.; Franchini, F.; High Energy Physics

    2007-11-14

    The Tile Calorimeter is one of the main hadronic calorimeters to be used in the ATLAS experiment at CERN [1,2]. It is a steel/scintillator sampling calorimeter which is built by stacking 64 segments in azimuth and 3 separate cylinders to provide a total structure whose length is approximately 12m and whose diameter is a little over 8.4m. It has a total weight of about 2630 metric tons. Important features of this calorimeter are: A minimum gap (1.5mm) between modules in azimuth; Pockets in the structure to hold the scintillator tiles; Recessed channels at the edges of the module into which the readout fibers will sit; and Holes in the structure through which a radioactive source will pass. The mechanical structure for one of the 3 calorimeter sections, the Extended Barrel (EBA) was constructed at Argonne. A schematic of the calorimeter sampling structure and the layout of one of the 64 segments, termed a module, are shown in figure 1. Each module comprises mechanically of a precision machined, structural girder to which 10 submodules are bolted. One of these submodules, the ITC, has a customized shape to accommodate services for other detector elements. Each submodule weighs 850Kg and the assembled mechanical structure of the module weighs approximately 9000Kg (a fully instrumented Extended Barrel modules weighs {approx}9600Kg). A crucial issue for the tile calorimeter assembly is the minimization of the un-instrumented gap between modules when they are stacked on top of each other during final assembly. The design goal was originally 1mm gap which was eventually relaxed to 1.5mm following a careful evaluation of all tolerances in the construction and assembly process as shown in figure 2 [3]. Submodules for this assembly were produced at 4 locations [4] using tooling and procedures which were largely identical [5]. An important issue was the height of each submodule on the stacking fixture on which they were fabricated as this defines the length along the girder

  11. An FPGA based Topological Processor prototype for the ATLAS Level-1 Trigger upgrade

    NASA Astrophysics Data System (ADS)

    Bauss, B.; Büscher, V.; Degele, R.; Ji, W.; Moritz, S.; Reiss, A.; Schäfer, U.; Simioni, E.; Tapprogge, S.; Wenzel, V.

    2012-12-01

    Starting in 2014, the LHC will collide bunches of protons at up to 14 TeV with an instantaneous luminosity increasing above the design value of 1 × 1034 cm-2s-1. Even though the resulting higher event rate will challenge the existing ATLAS data acquisition system, the trigger rate can be reduced by selecting channels based on their expected decay topology and thus reducing background. This will be achieved by introducing a new FPGA based module in the Level-1 Trigger: the Topological Processor (L1Topo). With L1Topo it will be possible to concentrate detailed information from the entire calorimeters and the muon detector into a single module. L1Topo will receive a total aggregate bandwidth of ≈ 1 Tb/s. High density optical I/O and state of the art FPGAs with embedded multi-Gb/s transceivers will be required. For a typical algorithm, the topology data will be processed in less than 100 ns. This paper focuses on the design of the first L1Topo prototype and results from a full-size, full-function demonstrator module. Implementation details of a topological algorithm and latency figures are presented.

  12. Barrels XXIX: Barrels go Hollywood.

    PubMed

    Evans, Mathew H; Brumberg, Joshua C

    2017-03-01

    Barrels XXIX brought together researchers focusing on the rodent barrel cortex and associated systems. The meeting revolved around three themes: thalamocortical interactions in motor control, touch in rodent, monkey, and humans, and the nature of the multisensory computations the brain makes. Over two days these topics were covered as well as many more presentations that focused on the physiology, behavior, and development of the rodent whisker-to-barrel cortex system.

  13. The PANDA Barrel DIRC

    NASA Astrophysics Data System (ADS)

    Dzhygadlo, R.; Schwarz, C.; Belias, A.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Britting, A.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Düren, M.; Etzelmüller, E.; Föhl, K.; Hayrapetyan, A.; Kröck, B.; Merle, O.; Rieke, J.; Schmidt, M.; Cowie, E.; Keri, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.

    2016-05-01

    The PANDA detector at the international accelerator Facility for Antiproton and Ion Research in Europe (FAIR) addresses fundamental questions of hadron physics. Experiments concerning charmonium spectroscopy, the search for hybrids and glueballs and the interaction of hidden and open charm particles with nucleons and nuclei will be performed with antiproton beams impinging on hydrogen or nuclear targets. Cooled beams allow the precision scan of resonances in formation experiments. The momentum range of the antiproton beam between 1.5 GeV/c and 15 GeV/c tests predictions by perturbation theory and will reveal deviations originating from strong QCD . An excellent hadronic particle identification will be accomplished by DIRC (Detection of Internally Reflected Cherenkov light) counters. The design for the barrel region is based on the successful BaBar DIRC with several key improvements, such as fast photon timing and a compact imaging region. DIRC designs based on different radiator geometries with several focusing options were studied in simulation. The performance of each design was characterized in terms of photon yield and single photon Cherenkov angle resolution. Selected design options were implemented in prototypes and tested with hadronic particle beams at GSI and CERN.

  14. BARREL Team Launching 20 Balloons

    NASA Video Gallery

    A movie made by the NASA-Funded Balloon Array for Radiation belt Relativistic Electron Losses, or BARREL, team on their work launching 20 balloons in Antarctica during the Dec. 2013/Jan. 2014 campa...

  15. TES Level 1B

    Atmospheric Science Data Center

    2014-12-08

    TES Level 1B data files contain radiometric calibrated spectral radiances and their ... and some engineering data are also provided. A Level 1B data file contains data from a single TES orbit for one focal ... as the Aura orbit number at the time of the South Pole apex crossing. version id represents the version identification number, ...

  16. Variant M4 Barrel Characterization

    DTIC Science & Technology

    2009-07-01

    an Instron Wilson-Tukon micro hardness - tester using a Knoop indenter with a 200g load. Knoop hardness values where then converted to 3 Rockwell ...relatively thin and localized to wide cracks and surfaces where the chromium has been completely removed. All fired barrels show extensive copper ...barrels had large deposits of copper at the root of the lands; in addition to collecting copper and firing debris at surface cracks and disparities

  17. OSIRIS camera barrel optomechanical design

    NASA Astrophysics Data System (ADS)

    Farah, Alejandro; Tejada, Carlos; Gonzalez, Jesus; Cobos, Francisco J.; Sanchez, Beatriz; Fuentes, Javier; Ruiz, Elfego

    2004-09-01

    A Camera Barrel, located in the OSIRIS imager/spectrograph for the Gran Telescopio Canarias (GTC), is described in this article. The barrel design has been developed by the Institute for Astronomy of the University of Mexico (IA-UNAM), in collaboration with the Institute for Astrophysics of Canarias (IAC), Spain. The barrel is being manufactured by the Engineering Center for Industrial Development (CIDESI) at Queretaro, Mexico. The Camera Barrel includes a set of eight lenses (three doublets and two singlets), with their respective supports and cells, as well as two subsystems: the Focusing Unit, which is a mechanism that modifies the first doublet relative position; and the Passive Displacement Unit (PDU), which uses the third doublet as thermal compensator to maintain the camera focal length and image quality when the ambient temperature changes. This article includes a brief description of the scientific instrument; describes the design criteria related with performance justification; and summarizes the specifications related with misalignment errors and generated stresses. The Camera Barrel components are described and analytical calculations, FEA simulations and error budgets are also included.

  18. Assembly of 5.5-Meter Diameter Developmental Barrel Segments for the Ares I Upper Stage

    NASA Technical Reports Server (NTRS)

    Carter, Robert W.

    2011-01-01

    Full scale assembly welding of Ares I Upper Stage 5.5-Meter diameter cryogenic tank barrel segments has been performed at the Marshall Space Flight Center (MSFC). One full-scale developmental article produced under the Ares 1 Upper Stage project is the Manufacturing Demonstration Article (MDA) Barrel. This presentation will focus on the welded assembly of this barrel section, and associated lessons learned. Among the MDA articles planned on the Ares 1 Program, the Barrel was the first to be completed, primarily because the process of manufacture from piece parts (barrel panels) utilized the most mature friction stir process planned for use on the Ares US program: Conventional fixed pin Friction Stir Welding (FSW). This process is in use on other space launch systems, including the Shuttle s External Tank, the Delta IV common booster core, the Delta II, and the Atlas V rockets. The goals for the MDA Barrel development were several fold: 1) to prove out Marshall Space Flight Center s new Vertical Weld Tool for use in manufacture of cylindrical barrel sections, 2) to serve as a first run for weld qualification to a new weld specification, and 3) to provide a full size cylindrical section for downstream use in precision cleaning and Spray-on Foam Insulation development. The progression leading into the welding of the full size barrel included sub scale panel welding, subscale cylinder welding, a full length confidence weld, and finally, the 3 seamed MDA barrel processing. Lessons learned on this MDA program have been carried forward into the production tooling for the Ares 1 US Program, and in the use of the MSFC VWT in processing other large scale hardware, including two 8.4 meter diameter Shuttle External Tank barrel sections that are currently being used in structural analysis to validate shell buckling models.

  19. Superior Barrel & Drum, Elk Township, New Jersey

    EPA Pesticide Factsheets

    The Superior Barrel and Drum Superfund site is a 5.5-acre property located in Elk Township, Gloucester County, New Jersey. Superior Barrel and Drum is listed as a drum reconditioning business. These facilities typically clean and recondition metal

  20. Use of Electroplated Chromium in Gun Barrels

    DTIC Science & Technology

    2006-05-01

    Temperature; oF S t r e s s R e t a i n e d ; % 50% swage 75% swage Residual stress retained following 2 hr furnace heating of 120mm M256 gun barrels... Swage Autofrettage LARGE CALIBER GUN BARREL STRENGTH Coating Process Temperature Limitations Autofrettage allows gun barrels to be lighter and

  1. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  2. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  3. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  4. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  5. 15 CFR 241.2 - Legal standard barrels.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ..., VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.2 Legal standard barrels. (a) Any barrel..., other than cranberries, in section 1 of the standard-barrel law, or any barrel or a subdivision thereof... than cranberries, or a legal subdivision thereof. No other barrel or subdivision in barrel form is...

  6. Development of an advanced electromagnetic gun barrel

    NASA Astrophysics Data System (ADS)

    Hurn, T. W.; D'Aoust, J.; Sevier, L.; Johnson, R.; Wesley, J.

    1993-01-01

    An advanced EM gun (AEMG) barrel was developed for the USAF Wright Laboratory to repetitively accelerate large-mass projectiles. The AEMG barrel employed 5-m rails, had a 50 mm square bore, and was designed to operate at a peak current of 1.5 MA (bore pressure 25 ksi). Key technical achievements included (1) an efficient barrel containment structure that weighs approximately 25 percent of a similarly rated clamped barrel, (2) an insulator material that retains surface resistivity after repeated firings, and (3) a high-velocity water cooling system designed to remove a peak heat flux of 5 MJ/sq m per shot. The AEMG barrel's thermal management system employed a 500 psi blowdown system that generated high velocity coolant flow rates in five axial coolant channels within each rail. Innovative fabrication processes were used to develop the barrel. A 2-m prototype of the AEMG barrel was tested in the General Atomics 4 MJ EM launcher test facility.

  7. MISR Level 1A Products

    Atmospheric Science Data Center

    2013-04-01

    ... MISR Level 1A Products Level 1A Engineering Data File Type 1 and Level 1A Navigation Data Processing ... Product Specification Rev K  (PDF). Transparent software rebuild with Irix 6.5.2 OS. F01_0007 (FM_ENG), ...

  8. Excitatory neuronal connectivity in the barrel cortex

    PubMed Central

    Feldmeyer, Dirk

    2012-01-01

    Neocortical areas are believed to be organized into vertical modules, the cortical columns, and the horizontal layers 1–6. In the somatosensory barrel cortex these columns are defined by the readily discernible barrel structure in layer 4. Information processing in the neocortex occurs along vertical and horizontal axes, thereby linking individual barrel-related columns via axons running through the different cortical layers of the barrel cortex. Long-range signaling occurs within the neocortical layers but also through axons projecting through the white matter to other neocortical areas and subcortical brain regions. Because of the ease of identification of barrel-related columns, the rodent barrel cortex has become a prototypical system to study the interactions between different neuronal connections within a sensory cortical area and between this area and other cortical as well subcortical regions. Such interactions will be discussed specifically for the feed-forward and feedback loops between the somatosensory and the somatomotor cortices as well as the different thalamic nuclei. In addition, recent advances concerning the morphological characteristics of excitatory neurons and their impact on the synaptic connectivity patterns and signaling properties of neuronal microcircuits in the whisker-related somatosensory cortex will be reviewed. In this context, their relationship between the structural properties of barrel-related columns and their function as a module in vertical synaptic signaling in the whisker-related cortical areas will be discussed. PMID:22798946

  9. CALIFA Barrel prototype detector characterisation

    NASA Astrophysics Data System (ADS)

    Pietras, B.; Gascón, M.; Álvarez-Pol, H.; Bendel, M.; Bloch, T.; Casarejos, E.; Cortina-Gil, D.; Durán, I.; Fiori, E.; Gernhäuser, R.; González, D.; Kröll, T.; Le Bleis, T.; Montes, N.; Nácher, E.; Robles, M.; Perea, A.; Vilán, J. A.; Winkel, M.

    2013-11-01

    Well established in the field of scintillator detection, Caesium Iodide remains at the forefront of scintillators for use in modern calorimeters. Recent developments in photosensor technology have lead to the production of Large Area Avalanche Photo Diodes (LAAPDs), a huge advancement on traditional photosensors in terms of high internal gain, dynamic range, magnetic field insensitivity, high quantum efficiency and fast recovery time. The R3B physics programme has a number of requirements for its calorimeter, one of the most challenging being the dual functionality as both a calorimeter and a spectrometer. This involves the simultaneous detection of ∼300 MeV protons and gamma rays ranging from 0.1 to 20 MeV. This scintillator - photosensor coupling provides an excellent solution in this capacity, in part due to the near perfect match of the LAAPD quantum efficiency peak to the light output wavelength of CsI(Tl). Modern detector development is guided by use of Monte Carlo simulations to predict detector performance, nonetheless it is essential to benchmark these simulations against real data taken with prototype detector arrays. Here follows an account of the performance of two such prototypes representing different polar regions of the Barrel section of the forthcoming CALIFA calorimeter. Measurements were taken for gamma-ray energies up to 15.1 MeV (Maier-Leibnitz Laboratory, Garching, Germany) and for direct irradiation with a 180 MeV proton beam (The Svedberg Laboratoriet, Uppsala, Sweden). Results are discussed in light of complementary GEANT4 simulations.

  10. Cobalt-Base Alloy Gun Barrel Study

    DTIC Science & Technology

    2014-07-01

    Cobalt -Base Alloy Gun Barrel Study by William S. de Rosset and Jonathan S. Montgomery ARL-RP-0491 July 2014 A reprint...21005-5069 ARL-RP-0491 July 2014 Cobalt -Base Alloy Gun Barrel Study William S. de Rosset and Jonathan S. Montgomery Weapons and Materials...DATE (DD-MM-YYYY) July 2014 2. REPORT TYPE Reprint 3. DATES COVERED (From - To) October–November 2013 4. TITLE AND SUBTITLE Cobalt -Base Alloy

  11. Multi-rail barrel design and performance

    NASA Astrophysics Data System (ADS)

    Maas, Brian L.; Bauer, David P.; Challita, Antonios

    1993-01-01

    Railgun barrels containing multiple isolated rail pairs can be used to control armature current distribution and/or to obtain independent circuits for use with specialized power supplies. Armature current control can be used to effectively distribute acceleration forces for improved projectile launch. Independent rail 'load' circuits are attractive for use with some power supplies such as a polyphase compulsator. We have built and tested a 30 mm barrel containing three distinct rail pairs. These three rail pairs were powered by separate power supplies. This paper describes issues associated with multi-rail barrel design and our band design and performance. Rail alignment, isolation, and construction are described. The effect of multiple rail pairs on the effective inductance gradient of the band is described and test results are provided.

  12. Rain Barrels: A Catalyst for Change?

    ERIC Educational Resources Information Center

    Bakacs, Michele E.; Haberland, Mike; Mangiafico, Salvatore S.; Winquist, Aileen; Obropta, Christopher C.; Boyajian, Amy; Mellor, Sara

    2013-01-01

    Over the past 4 years, rain barrel programming for residents has been implemented in both Northern Virginia and New Jersey as a method for educating the public about stormwater management and water conservation. Program participants demonstrated a significant increase in knowledge of water resource issues. Follow-up surveys showed 58% of New…

  13. 49 CFR 178.510 - Standards for wooden barrels.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... PACKAGINGS Non-bulk Performance-Oriented Packaging Standards § 178.510 Standards for wooden barrels. (a) The... intended use of the barrel. (3) Staves and heads must be sawn or cleft with the grain so that no...

  14. Pixel electronics for the ATLAS experiment

    NASA Astrophysics Data System (ADS)

    Fischer, P.

    2001-06-01

    The ATLAS experiment at LHC will use 3 barrel layers and 2×5 disks of silicon pixel detectors as the innermost elements of the semiconductor tracker. The basic building blocks are pixel modules with an active area of 16.4 mm×60.8 mm which include an n + on n-type silicon sensor and 16 VLSI front-end (FE) chips. Every FE chip contains a low power, high speed charge sensitive preamplifier, a fast discriminator, and a readout system which operates at the 40 MHz rate of LHC. The addresses of hit pixels (as well as a low resolution pulse height information) are stored on the FE chips until arrival of a level 1 trigger signal. Hits are then transferred to a module controller chip (MCC) which collects the data of all 16 FE chips, builds complete events and sends the data through two optical links to the data acquisition system. The MCC receives clock and data through an additional optical link and provides timing and configuration information for the FE chips. Two additional chips are used to amplify and decode the pin diode signal and to drive the VCSEL laser diodes of the optical links.

  15. Barrel cortex and whisker-mediated behaviors.

    PubMed

    Brecht, Michael

    2007-08-01

    Neural networks of the rodent barrel cortex are particularly tractable for developing a quantitative understanding of response transformations in a cortical column. A column in barrel cortex consists of approximately 10 compartments. Two thalamic input pathways, a sensory lemniscal one and sensorimotor paralemniscal one, are transformed to approximately 7 population outputs, each with distinct spatiotemporal response characteristics. Granular and supragranular layers are sites of segregated processing in lemniscal and paralemniscal pathways, whereas infragranular layers are sites of intracolumnar, lemniscal/paralemniscal integration. Individual thalamocortical connections are relatively weak, and a considerable fraction of thalamocortical afferents contributes to each sensory response. Intracortically, relatively few but strong synaptic connections contribute to sensory responses, and responses are rapidly terminated by inhibition. Overall cortical population activity is very low. Whiskers mediate a wide range of behaviors and many natural tactile behaviors occur very rapidly. Vibrissal object recognition can be size invariant and motion invariant and is based on the tactile 'Gestaltwahrnehmung' of shape.

  16. Barrel calorimeter of the CMD-3 detector

    SciTech Connect

    Shebalin, V. E. Anisenkov, A. V.; Aulchenko, V. M.; Bashtovoy, N. S.; Epifanov, D. A.; Epshteyn, L. B.; Grebenuk, A. A.; Ignatov, F. V.; Erofeev, A. L.; Kovalenko, O. A.; Kozyrev, A. N.; Kuzmin, A. S.; Logashenko, I. B.; Mikhailov, K. Yu.; Razuvaev, G. P.; Ruban, A. A.; Shwartz, B. A.; Talyshev, A. A.; Titov, V. M.; Yudin, Yu. V.

    2015-12-15

    The structure of the barrel calorimeter of the CMD-3 detector is presented in this work. The procedure of energy calibration of the calorimeter and the method of photon energy restoration are described. The distinctive feature of this barrel calorimeter is its combined structure; it is composed of two coaxial subsystems: a liquid xenon calorimeter and a crystalline CsI calorimeter. The calorimeter spatial resolution of the photon conversion point is about 2 mm, which corresponds to an angular resolution of ∼6 mrad. The energy resolution of the calorimeter is about 8% for photons with energy of 200 MeV and 4% for photons with energy of 1 GeV.

  17. Real-time monitoring of barrel thickness and barrel/screw separation using ultrasound

    NASA Astrophysics Data System (ADS)

    Jen, Cheng-Kuei; Zun, Zhigang; Kobayashi, Makiko

    2005-03-01

    Ultrasonic sensors together with a fast data acquisition system have been used to monitor the barrel thickness and barrel/screw separation during low-density polyethylene as well as high-density polyethylene extrusion in 30 mm and 50 mm twin-screw extruders. The sensors include sol-gel sprayed high temperature (HT) piezoelectric thick ceramic film ultrasonic transducers (UTs), stand-alone HTUTs and air-cooled buffer rod type sensors consisting of a room temperature UT and a non-clad or clad buffer rod to which the room temperature UT is attached. The installation and use of these sensors are non-intrusive to the extruder and non-destructive to the polymers being processed. This study has demonstrated the capability of appropriately designed ultrasonic sensors in monitoring the barrel and screw integrity at the melting, mixing and pumping zones of the extruder via barrel or flange. The merits and limitations of these sensors are discussed. The measurement speed and analysis of the sensitivity for quantitative wear measurements are also presented.

  18. 1. EXTERIOR, SIDE OF PICKLE BARREL RESTAURANT AND ADJOINING STORE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. EXTERIOR, SIDE OF PICKLE BARREL RESTAURANT AND ADJOINING STORE - Silverton Historic District, East Thirteenth & Green Streets (Commercial Building), East Thirteenh & Green Streets, Silverton, San Juan County, CO

  19. Parametric modeling of zoom lens barrels

    NASA Astrophysics Data System (ADS)

    Pierce, Charles W.

    2001-12-01

    Today's customer requires zoom lens designs that are compact, inexpensive, and at six-sigma quality levels. While incorporating these customer requirements, a design team must often work within compressed design cycles and minimal product development budgets. These customer and project constraints, coupled with the inherent complexity of a zoom lens module, force the design team to try new and innovative techniques to deliver their products. This paper presents the methods used to develop lens barrels for several zoom lens module projects at Eastman Kodak Company. The lens barrel, a critical interface between the mechanical and optical systems, presented a technical barrier from both an engineering analysis and manufacturing perspective. The method used to overcome these barriers consisted of identifying several key functional parameters, creating a parameter-driven 3-D solid model in a commercially available CAD system, and then using the model to make iterative, data-driven design decisions while leveraging the model to create engineering drawings and the necessary prototypes and production tooling. As a result, the designs were able to meet their size, cost, and design cycle time requirements while realizing a better than anticipated first pass yield and quality level.

  20. The Level-1 Tile-Muon Trigger in the Tile Calorimeter upgrade program

    NASA Astrophysics Data System (ADS)

    Ryzhov, A.

    2016-12-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC). TileCal provides highly-segmented energy measurements for incident particles. Information from TileCal's outermost radial layer can assist in muon tagging in the Level-1 Muon Trigger by rejecting fake muon triggers due to slow charged particles (typically protons) without degrading the efficiency of the trigger. The main activity of the Tile-Muon Trigger in the ATLAS Phase-0 upgrade program was to install and to activate the TileCal signal processor module for providing trigger inputs to the Level-1 Muon Trigger. This report describes the Tile-Muon Trigger, focusing on the new detector electronics such as the Tile Muon Digitizer Board (TMDB) that receives, digitizes and then provides the signal from eight TileCal modules to three Level-1 muon endcap Sector-Logic Boards.

  1. 27 CFR 25.141 - Barrels and kegs.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Barrels and kegs. 25.141 Section 25.141 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Marks, Brands, and Labels § 25.141 Barrels and kegs. (a)...

  2. Steel specification for the Atlas calorimeter

    SciTech Connect

    Guarino, V.

    1998-02-10

    As part of a collaborative experimental High Energy Physics experiment at the LHC Facility, CERN Laboratory, Geneva Switzerland, a group of US institutions has accepted the responsibility for constructing a large portion of the calorimeter for this experiment. This device is referred to as the Tile Calorimeter. The Tile Calorimeter has three major elements, a large center section (Barrel), and two end sections (Extended Barrel). The US group will be responsible for the construction of one of these extended barrel sections. All of the components that are required to construct this device will be fabricated in the US over a period of three years commencing in 1998. Another similar element and the barrel element will be constructed in both eastern and western Europe by parallel groups. The extended barrel is a cylindrical device approximately 8.5 meters (28 ft.) OD x 4.5 meters (14 ft.) ID, made up of 64 wedges. Each of these wedges (see Attachment 1) is constructed by bolting submodules to a strongback girder. Each submodule is constructed of a series of sheets that are welded and glued together. This document summarizes the characteristics and specifications of these steel sheets. The Tile Calorimeter is the return path for the magnet flux of the ATLAS internal superconducting 2T solenoid, therefore its steel magnetic properties are important.

  3. Software development for the P¯ANDA barrel DIRC

    NASA Astrophysics Data System (ADS)

    Dutta, Dipanwita; P¯ANDA Cherenkov Group

    2011-05-01

    The charged particle identification in the barrel region of the P¯ANDA detector in the future FAIR facility at GSI is planned with a very thin Cherenkov detector using the DIRC principle. Due to a very compact design of the barrel DIRC with focusing optics, the reconstruction of the Cherenkov angle is quite challenging. In this contribution, the possible reconstruction algorithm of the barrel DIRC will be discussed, with emphasis on the possibility to include the DIRC in the trigger decision and the correction of the chromatic dispersion with fast timing information.

  4. 8. VIEW NORTHWEST OF EAST ELEVATION SOUTH BARREL ARCH. NOTE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    8. VIEW NORTHWEST OF EAST ELEVATION SOUTH BARREL ARCH. NOTE STONE WORK, 1920 CONCRETE REPAIRS, AND STEEL BRACES ADDED BY THE NATIONAL PARK SERVICE CIRCA 1962. - Chesapeake & Ohio Canal, Conococheague Creek Aqueduct, Milepost 99.80, Williamsport, Washington County, MD

  5. Staining in firearm barrels after experimental contact shots.

    PubMed

    Schyma, C; Bauer, K; Brünig, J; Courts, C; Madea, B

    2017-04-01

    After contact shots to the head biological traces inside firearm barrels can be found. This study was conducted to simulate and to evaluate such staining. Five current handguns of four inch barrel length in the calibre .22 long rifle, 7.65mm Browning, 9mm Luger and .38 special were used to perform 24 contact shots on silicone coated, gelatine filled box models using the triple contrast method. The staining was documented by endoscopy and swabs gathered from both ends of the barrel were analysed by quantitative PCR. With the exception of the .22 revolver, all firearms showed distinct staining which decreased from the muzzle to the rear end of the barrel. The pattern was varied, showing droplets, elongated forms or stripes. In 14 of 24 shots, staining reached the chamber. The staining results were comparable to real suicide cases.

  6. Allen Auditorium attic looking from southeast corner. Wine barrels with ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Allen Auditorium attic looking from southeast corner. Wine barrels with scrap used for counterweight material for lift up walls no longer in use - Sheldon Jackson College, Richard H. Allen Memorial Hall, Lincoln Street, Sitka, Sitka Borough, AK

  7. 18. CONSTRUCTION PROGRESS PHOTO SHOWING SURPLUS GUN BARRELS IN PLACE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    18. CONSTRUCTION PROGRESS PHOTO SHOWING SURPLUS GUN BARRELS IN PLACE TO BE USED AS PIPE TUNNELS. INEEL PHOTO NUMBER NRTS-59-925. - Idaho National Engineering Laboratory, Old Waste Calcining Facility, Scoville, Butte County, ID

  8. 16. CONSTRUCTION PROGRESS PHOTO SHOWING SURPLUS GUN BARREL BEING LOWERED ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    16. CONSTRUCTION PROGRESS PHOTO SHOWING SURPLUS GUN BARREL BEING LOWERED INTO PLACE FOR USE AS PIPE TUNNEL. INEEL PHOTO NUMBER NRTS-59-709. - Idaho National Engineering Laboratory, Old Waste Calcining Facility, Scoville, Butte County, ID

  9. Finite element analysis of the SDC barrel and endcap calorimeters

    SciTech Connect

    Guarino, V.; Hill, N.; Nasiakta, J.

    1992-03-11

    In designing the SCD barrel and endcap calorimeters, the inter-module connecting forces must be known in order to determine the required size and number of connecting links between modules, and in order to understand how individual modules will be affected by these forces when assembled to form a full barrel and endcap. The connecting forces were found by analyzing three-dimensional Finite Element Models of both the barrel and endcap. This paper is divided into two parts, the first part will describe in detail the results of the barrel analysis and the second part will describe the results obtained from the endcap analysis. A similar approach was used in constructing the models for both analysis.

  10. 49 CFR 178.510 - Standards for wooden barrels.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) SPECIFICATIONS FOR PACKAGINGS Non... of the barrel. (3) Staves and heads must be sawn or cleft with the grain so that no annual...

  11. 3. BARREL VIEW, LOOKING DOWN LENGTH OF BRIDGE, SHOWING MAKER'S ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. BARREL VIEW, LOOKING DOWN LENGTH OF BRIDGE, SHOWING MAKER'S PLATE, DECORATIVE SCROLLWORK AND URN FINIALS ON NORTHEAST PORTAL - "Forder" Pratt Through Truss Bridge, Spanning Maumee River at County Route 73, Antwerp, Paulding County, OH

  12. INTERIOR VIEW, DETAIL OF BARREL ROOF STRUCTURE, FACING NORTHEAST. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW, DETAIL OF BARREL ROOF STRUCTURE, FACING NORTHEAST. - Southern Branch of the National Home for Disabled Volunteer Soldiers, Building 13, Harris Avenue at its intersection of Black Avenue and Woodfin Street, Hampton, Hampton, VA

  13. Anatomy atlases.

    PubMed

    Rosse, C

    1999-01-01

    Anatomy atlases are unlike other knowledge sources in the health sciences in that they communicate knowledge through annotated images without the support of narrative text. An analysis of the knowledge component represented by images and the history of anatomy atlases suggest some distinctions that should be made between atlas and textbook illustrations. Textbook and atlas should synergistically promote the generation of a mental model of anatomy. The objective of such a model is to support anatomical reasoning and thereby replace memorization of anatomical facts. Criteria are suggested for selecting anatomy texts and atlases that complement one another, and the advantages and disadvantages of hard copy and computer-based anatomy atlases are considered.

  14. Composting barrel for sustainable organic waste management in Bangladesh.

    PubMed

    Moqsud, Md Azizul; Bushra, Quazi Sifat; Rahman, M H

    2011-12-01

    To ensure quick and uniform aerobic stabilization of biowaste through domestic composting and to prevent malodorous emissions, two modifications were made to a conventional steel barrel composter by: (1) providing 0.0125 m diameter openings throughout the sides and (2) placing a 0.0254 m diameter perforated polyvinyl chloride (PVC) pipe in the middle portion of the barrel. The volume of composting waste before modification of the composting barrel was 40% of the original volume and it was 70%, 4 weeks following the modifications. In addition, the nutrients in the compost were found to be in a more suitable range after modification of the composting barrel. The carbon-nitrogen ratio (C/N) of the compost was in the ideal range of 11-15 in the modified composting reactor but it was quite high (24-25) in the conventional barrel. This modified barrel composting plant proved to be an efficient, eco-friendly, cost-effective solution for the management of organic solid waste materials in developing and technologically less sophisticated countries such as Bangladesh.

  15. Upgrade of the CMS muon trigger system in the barrel region

    NASA Astrophysics Data System (ADS)

    Rabady, Dinyar; Ero, Janos; Flouris, Giannis; Fulcher, Jonathan; Loukas, Nikitas; Paradas, Evangelos; Reis, Thomas; Sakulin, Hannes; Wulz, Claudia-Elisabeth

    2017-02-01

    To maintain the excellent performance shown during the LHC's Run-1 the Level-1 Trigger of the Compact Muon Solenoid experiment underwent a significant upgrade. One part of this upgrade is the re-organization of the muon trigger path from a subsystem-centric view in which hits in the drift tubes (DT), the cathode strip chambers (CSC), and the resistive plate chambers (RPC) were treated separately in dedicated track-finding systems to one in which complementary detector systems for a given region (barrel, overlap, and endcap) are merged at the track-finding level. This fundamental restructuring of the muon trigger system required the development of a system to receive track candidates from the track-finding layer, remove potential duplicate tracks, and forward the best candidates to the global decision layer. An overview will be given of the new track-finder system for the barrel region, the Barrel Muon Track Finder (BMTF), as well as the cancel-out and sorting layer: the upgraded Global Muon Trigger (μGMT). Both the BMTF and μGMT have been implemented in a Xilinx Virtex-7 card utilizing the microTCA architecture. While the BMTF improves on the proven and well-tested algorithms used in the Drift Tube Track Finder during Run-1, the μGMT is an almost complete re-development due to the re-organization of the underlying systems from track-finders for a specific detector to regional track finders covering a given area of the whole detector. Additionally the μGMT calculates a muon's isolation using energy information received from the calorimeter trigger. This information is added to the muon objects forwarded to the global decision layer, the so-called Global Trigger.

  16. Aroma potential of oak battens prepared from decommissioned oak barrels.

    PubMed

    Li, Sijing; Crump, Anna M; Grbin, Paul R; Cozzolino, Daniel; Warren, Peter; Hayasaka, Yoji; Wilkinson, Kerry L

    2015-04-08

    During barrel maturation, volatile compounds are extracted from oak wood and impart aroma and flavor to wine, enhancing its character and complexity. However, barrels contain a finite pool of extractable material, which diminishes with time. As a consequence, most barrels are decommissioned after 5 or 6 years. This study investigated whether or not decommissioned barrels can be "reclaimed" and utilized as a previously untapped source of quality oak for wine maturation. Oak battens were prepared from staves of decommissioned French and American oak barrels, and their composition analyzed before and after toasting. The oak lactone glycoconjugate content of untoasted reclaimed oak was determined by liquid chromatography-tandem mass spectrometry, while the concentrations of cis- and trans-oak lactone, guaiacol, 4-methlyguaiacol, vanillin, eugenol, furfural, and 5-methylfurfural present in toasted reclaimed oak were determined by gas chromatography-mass spectrometry. Aroma potential was then evaluated by comparing the composition of reclaimed oak with that of new oak. Comparable levels of oak lactone glycoconjugates and oak volatiles were observed, demonstrating the aroma potential of reclaimed oak and therefore its suitability as a raw material for alternative oak products, i.e., chips or battens, for the maturation of wine. The temperature profiles achieved during toasting were also measured to evaluate the viability of any yeast or bacteria present in reclaimed oak.

  17. β-Barrel membrane protein assembly by the Bam complex.

    PubMed

    Hagan, Christine L; Silhavy, Thomas J; Kahne, Daniel

    2011-01-01

    β-barrel membrane proteins perform important functions in the outer membranes (OMs) of Gram-negative bacteria and of the mitochondria and chloroplasts of eukaryotes. The protein complexes that assemble these proteins in their respective membranes have been identified and shown to contain a component that has been conserved from bacteria to humans. β-barrel proteins are handled differently from α-helical membrane proteins in the cell in order to efficiently transport them to their final locations in unfolded but folding-competent states. The mechanism by which the assembly complex then binds, folds, and inserts β-barrels into the membrane is not well understood, but recent structural, biochemical, and genetic studies have begun to elucidate elements of how the complex provides a facilitated pathway for β-barrel assembly. Ultimately, studies of the mechanism of β-barrel assembly and comparison to the better-understood process of α-helical membrane protein assembly will reveal whether there are general principles that guide the folding and insertion of all membrane proteins.

  18. Small arms mini-fire control system: fiber-optic barrel deflection sensor

    SciTech Connect

    Rajic, Slobodan; Datskos, Panos G

    2012-01-01

    Traditionally the methods to increase firearms accuracy, particularly at distance, have concentrated on barrel isolation (free floating) and substantial barrel wall thickening to gain rigidity. This barrel stiffening technique did not completely eliminate barrel movement but the problem was significantly reduced to allow a noticeable accuracy enhancement. This process, although highly successful, came at a very high weight penalty. Obviously the goal would be to lighten the barrel (firearm), yet achieve even greater accuracy. Thus, if lightweight barrels could ultimately be compensated for both their static and dynamic mechanical perturbations, the result would be very accurate, yet significantly lighter weight, weapons. We discuss our development of a barrel reference sensor system that is designed to accomplish this ambitious goal. Our optical fiber-based sensor monitors the barrel muzzle position and autonomously compensates for any induced perturbations. The reticle is electronically adjusted in position to compensate for the induced barrel deviation in real time.

  19. Small arms mini-fire control system: fiber-optic barrel deflection sensor

    NASA Astrophysics Data System (ADS)

    Rajic, S.; Datskos, P.; Lawrence, W.; Marlar, T.; Quinton, B.

    2012-06-01

    Traditionally the methods to increase firearms accuracy, particularly at distance, have concentrated on barrel isolation (free floating) and substantial barrel wall thickening to gain rigidity. This barrel stiffening technique did not completely eliminate barrel movement but the problem was significantly reduced to allow a noticeable accuracy enhancement. This process, although highly successful, came at a very high weight penalty. Obviously the goal would be to lighten the barrel (firearm), yet achieve even greater accuracy. Thus, if lightweight barrels could ultimately be compensated for both their static and dynamic mechanical perturbations, the result would be very accurate, yet significantly lighter weight, weapons. We discuss our development of a barrel reference sensor system that is designed to accomplish this ambitious goal. Our optical fiber-based sensor monitors the barrel muzzle position and autonomously compensates for any induced perturbations. The reticle is electronically adjusted in position to compensate for the induced barrel deviation in real time.

  20. The impact of acceleration on barrel/launch package design

    SciTech Connect

    Ang, J.A. ); Hauze, G. )

    1991-01-01

    This paper discusses the impact of launch acceleration on the design of electromagnetic launcher barrels and on the design of associated launch packages. This is of particular interest because launch package size and mass directly affect the overall armament system size and mass. A common design approach is to use as the peak launch acceleration, the maximum acceleration which the projectile can be designed to withstand. While this approach will minimize barrel length, it may also yield an excessively large overall system size and mass, especially for the long, slender projectile configurations which are desired for high aero-thermal and terminal ballistics performance. An alternate design approach is described which balances the goals of reducing barrel length with reducing launch package mass. Results illustrate the benefits of this balanced design approach on overall armament system size and mass.

  1. Calibration and operation of the PNL Barrel Assayer

    SciTech Connect

    Arthur, R J

    1991-07-01

    Pacific Northwest Laboratory operates a Barrel Assayer to measure the radionuclide content of 208-liter waste drums. This mobile apparatus is designed to provide quantitative information on each radioisotope in a drum and to recognize and locate hot spots within the drum. A lead-collimated intrinsic-germanium detector mounted on a moveable platform vertically scans a rotating drum for gamma-ray activity while 62 stationary {sup 10}BF{sub 3} tubes measure neutrons emitted by transuranic isotopes within the waste. Several approaches have been used to document the controls under which the Barrel Assayer has been operated from February 1989 through December 1990. Resin-filled 208-1 calibration barrels containing known quantities of {sup 60}Co, {sup 137}Cs, and {sup 134}Cs were measured by the Barrel Assayer and found to be well within 25% of the known values. A thorium nitrate standard that served as the secondary, or field, standard verified that the detector has been within calibration during the period from February 1989 through December 1990. In previous testing, 23 waste drums were assayed at several commercial nuclear power plants. Subsequently, aliquots from the top, middle, and bottom of the barrels were analyzed. The ratio of grab-sample concentration to direct-assay concentration averaged {minus}1.6 for one plant and +1.3 for another. Results using the Barrel Assayer were also comparable to those obtained using Safeguards Security's Segmented Gamma-ray Scanner (SGS) system in a cross-calibration experiment performed by a third party on several drums containing TRU wastes. 6 refs., 6 figs., 9 tabs.

  2. Level 1 Daq System for Kloe

    NASA Astrophysics Data System (ADS)

    Aloisio, A.; Cavaliere, S.; Cevenini, F.; Della Volpe, D.; Merola, L.; Anastasio, A.; Fiore, D. J.

    KLOE is a general purpose detector optimized to observe CP violation in K0 decays. This detector will be installed at the DAΦNE Φ-factory, in Frascati (Italy) and it is expected to run at the end of 1997. The KLOE DAQ system can be divided mainly into the front-end fast readout section (the Level 1 DAQ), the FDDI Switch and the processor farm. The total bandwidth requirement is estimated to be of the order of 50 Mbyte/s. In this paper, we describe the Level 1 DAQ section, which is based on custom protocols and hardware controllers, developed to achieve high data transfer rates and event building capabilities without software overhead.

  3. PLANCK LFI Level 1 Processing During Operations

    NASA Astrophysics Data System (ADS)

    Morisset, N.; Rohlfs, R.; Türler, M.; Meharga, M.; Binko, P.; Beck, M.; Frailis, M.; Zacchei, A.; Galeotta, S.

    2008-08-01

    The PLANCK satellite with two on-board instruments, a Low Frequency Instrument (LFI) and a High Frequency Instrument (HFI) is foreseen to be launched in August 2008 with Ariane 5. The Data Processing Centre (DPC) in Trieste, Italy for LFI is responsible for processing the PLANCK LFI data. The ISDC data centre in Switzerland is responsible for developing/installing and maintaining the software for the LFI Level 1 data processing presented here. The main tasks of the Level 1 processing are to retrieve the daily available consolidated scientific and housekeeping (HK) data of the LFI instrument from the Mission Operation Centre in Darmstadt (MOC); to sort them by time and by type (detector, observing mode, etc...); to extract the spacecraft attitude information from auxiliary files; to flag the data according to several criteria; and to archive the resulting Time Ordered Information (TOI). The TOI data generated by the level 1 pipeline are the input for the more scientific LFI level 2 processing. The TOI are first stored in FITS format and then ingested into the Data Management Component (DMC) system, which is the interface to the LFI DPC database. In addition, the ISDC also developed software tools to display and perform a quick look analysis of the data.

  4. 14. Interior view, grain tanks (bins). Barrel view of tunnel ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    14. Interior view, grain tanks (bins). Barrel view of tunnel for load-out belt conveyor system located below tanks. Square, numbered spouts gravity-feed grain from overhead bins onto belt. - Saint Anthony Elevator No. 3, 620 Malcom Avenue, Southeast, Minneapolis, Hennepin County, MN

  5. New results in meson spectroscopy from the crystal barrel experiment

    SciTech Connect

    Meyer, C.A.

    1994-04-01

    Recent observations by the Crystal Barrel experiment of two scalar resonances, f{sub o}(1365) and a{sub o}(1450) have allowed the authors to clarify the members of the scalar nonet. In addition, a third scalar, f{sub o}(1500), appears to be supernumerary, and is a candidate for the scalar glueball expected near 1500 MeV.

  6. 4. AERIAL 'BARREL' SHOT OF THE PATH TRANSIT SYSTEM BRIDGE, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    4. AERIAL 'BARREL' SHOT OF THE PATH TRANSIT SYSTEM BRIDGE, LOOKING SOUTHEAST TOWARDS JERSEY CITY. TO THE RIGHT ARE THE NEWARK TURNPIKE AND THE CONRAIL BRIDGE (HAER No. NJ-43). THE PULASKI SKYWAY (HAER No. NJ-34) IS IN THE BACKGROUND TO THE RIGHT - Path Transit System Bridge, Spanning Hackensack River, Kearny, Hudson County, NJ

  7. 27 CFR 25.144 - Rebranding barrels and kegs.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Marks, Brands, and Labels § 25.144 Rebranding barrels and... permanently remove or durably cover the original marks and brands after notifying the appropriate TTB officer... the original marks and brands if the brewer: (1) Adopts a trade name substantially identical to...

  8. Centrifugal Barrel Finishing Of Turbine-Blade "Fir Trees"

    NASA Technical Reports Server (NTRS)

    Mandel, Johnny L.

    1990-01-01

    Modified centrifugal barrel-finishing machine imparts desired residual compressive stresses to "fir trees" of turbine blades. Centrifugal forces generate compressive stresses, which are transmitted to turbine blades through abrasive slurries in which suspended. Eliminates need for shot peening, rounding of edges and burrs caused by shot peening and, consequently, need for mass finishing operations to remove burrs. Improves surface finish of "fir trees".

  9. 1. INTERIOR VIEW WITH NAVE, BARREL VAULTED SOLEA, ICONOSTAS WITH ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    1. INTERIOR VIEW WITH NAVE, BARREL VAULTED SOLEA, ICONOSTAS WITH ICON AND SANCTUARY. IN ARCH ABOVE THE SANCTUARY IS THE TABLE OF ABRAHAM. THE ICONOSTAS INCLUDES ICONS OF THE ARCHANGEL MICHAEL, THE HOLY TRINITY, MOTHER OF GOD HOLDING THE CHRIST CHILD, JESUS. - Holy Trinity-Holy Cross Greek Orthodox Church, 200 Nineteenth Street South, Birmingham, Jefferson County, AL

  10. Postsynaptic Deregulation in GAP-43 Heterozygous Mouse Barrel Cortex

    PubMed Central

    Kelly, Emily A.; Tremblay, Marie-Ève; McCasland, James S.

    2010-01-01

    Formation of whisker-related barrels in primary somatosensory cortex (S1) requires communication between presynaptic thalamocortical afferents (TCAs) and postsynaptic cortical neurons. GAP-43 is crucially involved in targeting TCAs to postsynaptic S1 neurons but its influence on the interactions between these 2 elements has not been explored. Here, we tested the hypothesis that reduced early expression of presynaptic GAP-43 (GAP-43 heterozygous [HZ] mice) alters postsynaptic differentiation of barrel cells. We found a transient increase in cytochrome oxidase staining between P6 and P14 in HZ animals, indicative of increased metabolic activity in barrel cortex during this time. Golgi impregnation and microtubule-associated protein 2 immunohistochemistry showed anomalous dendritic patterning in GAP-43 HZ cortex at P5, with altered dendritic length and branching and abnormal retention of dendrites that extend into developing septa. This deficiency was no longer apparent at P7, suggesting partial recovery of dendritic pruning processes. Finally, we showed early defects in synaptogenesis from P4 to P5 with increased colocalization of NR1 and GluR1 staining in HZ mice. By P7, this colocalization had normalized to wild type levels. Taken together, our findings suggest abnormal postsynaptic differentiation in GAP-43 HZ cortex during early barrel development, followed by adaptive compensation and partial phenotypic rescue. PMID:19915093

  11. Barrelettes without barrels in the American water shrew.

    PubMed

    Catania, Kenneth C; Catania, Elizabeth H; Sawyer, Eva K; Leitch, Duncan B

    2013-01-01

    Water shrews (Sorex palustris) depend heavily on their elaborate whiskers to navigate their environment and locate prey. They have small eyes and ears with correspondingly small optic and auditory nerves. Previous investigations have shown that water shrew neocortex is dominated by large representations of the whiskers in primary and secondary somatosensory cortex (S1 and S2). Flattened sections of juvenile cortex processed for cytochrome oxidase revealed clear borders of the whisker pad representation in S1, but no cortical barrels. We were therefore surprised to discover prominent barrelettes in brainstem of juvenile water shrews in the present investigation. These distinctive modules were found in the principal trigeminal nucleus (PrV), and in two of the three spinal trigeminal subnuclei (interpolaris--SpVi and caudalis--SpVc). Analysis of the shrew's whisker pad revealed the likely relationship between whiskers and barrelettes. Barrelettes persisted in adult water shrew PrV, but barrels were also absent from adult cortex. Thus in contrast to mice and rats, which have obvious barrels in primary somatosensory cortex and less clear barrelettes in the principal nucleus, water shrews have clear barrelettes in the brainstem and no barrels in the neocortex. These results highlight the diverse ways that similar mechanoreceptors can be represented in the central nervous systems of different species.

  12. 9. Generator Barrel and Rotor of Unit 1, view to ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    9. Generator Barrel and Rotor of Unit 1, view to the southeast, showing part of the rotor and generator coils along top of photograph and southeast entry stairwell and doors in lower center of photograph. - Washington Water Power Clark Fork River Noxon Rapids Hydroelectric Development, Powerhouse, South bank of Clark Fork River at Noxon Rapids, Noxon, Sanders County, MT

  13. 13. Interior view, grain tanks (bins). Barrel view of overhead ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    13. Interior view, grain tanks (bins). Barrel view of overhead (fill) conveyor gallery bridge extending through tops of tanks just below roofs. Grain tripper straddles belt conveyor at mid-view. - Saint Anthony Elevator No. 3, 620 Malcom Avenue, Southeast, Minneapolis, Hennepin County, MN

  14. VIEW, LOOKING SOUTHWEST OF GOLD AMALGAMATION ROOM, SHOWING AMALGAMATION BARREL ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    VIEW, LOOKING SOUTHWEST OF GOLD AMALGAMATION ROOM, SHOWING AMALGAMATION BARREL AT CENTER FOREGROUND, BULLION FURNACE IN LARGE HOOD BEHIND IT, AND GOLD RETORT IN BACKGROUND HOOD. NOTE OVERHEAD MONORAIL FOR MATERIALS HANDLING. - Shenandoah-Dives Mill, 135 County Road 2, Silverton, San Juan County, CO

  15. A summary of the BARREL campaigns: Technique for studying electron precipitation.

    PubMed

    Woodger, L A; Halford, A J; Millan, R M; McCarthy, M P; Smith, D M; Bowers, G S; Sample, J G; Anderson, B R; Liang, X

    2015-06-01

    BARREL observed electron precipitation over wide range of energy and timescalesPrecipitating electron distribution is determined using spectroscopy for 19 January 2013 eventBARREL timing data has accuracy within sampling interval of 0.05 s.

  16. Getting Over the Barrel- Achieving Independence from Foreign Oil in 2018

    DTIC Science & Technology

    2009-02-03

    The USGS’s 1998 assessment of area 1002 in the Alaskan National Wildlife Refuge ( ANWR ) estimates there are almost 21 billion barrels of technically...recoverable at $40 a barrel. ANWR area 1002 is expected to produce 780,000 barrels per day in 2018.27 The technological developments in oil...economically recoverable oil. Between them the Outer Continental Shelf, Bakken formation and ANWR area 1002 possess an estimated 109 billion barrels of

  17. 49 CFR 178.607 - Cooperage test for bung-type wooden barrels.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... FOR PACKAGINGS Testing of Non-bulk Packagings and Packages § 178.607 Cooperage test for bung-type wooden barrels. (a) Number of samples. One barrel is required for each different packaging. (b) Method of... 49 Transportation 2 2010-10-01 2010-10-01 false Cooperage test for bung-type wooden barrels....

  18. GIFTS SM EDU Level 1B Algorithms

    NASA Technical Reports Server (NTRS)

    Tian, Jialin; Gazarik, Michael J.; Reisse, Robert A.; Johnson, David G.

    2007-01-01

    The Geosynchronous Imaging Fourier Transform Spectrometer (GIFTS) SensorModule (SM) Engineering Demonstration Unit (EDU) is a high resolution spectral imager designed to measure infrared (IR) radiances using a Fourier transform spectrometer (FTS). The GIFTS instrument employs three focal plane arrays (FPAs), which gather measurements across the long-wave IR (LWIR), short/mid-wave IR (SMWIR), and visible spectral bands. The raw interferogram measurements are radiometrically and spectrally calibrated to produce radiance spectra, which are further processed to obtain atmospheric profiles via retrieval algorithms. This paper describes the GIFTS SM EDU Level 1B algorithms involved in the calibration. The GIFTS Level 1B calibration procedures can be subdivided into four blocks. In the first block, the measured raw interferograms are first corrected for the detector nonlinearity distortion, followed by the complex filtering and decimation procedure. In the second block, a phase correction algorithm is applied to the filtered and decimated complex interferograms. The resulting imaginary part of the spectrum contains only the noise component of the uncorrected spectrum. Additional random noise reduction can be accomplished by applying a spectral smoothing routine to the phase-corrected spectrum. The phase correction and spectral smoothing operations are performed on a set of interferogram scans for both ambient and hot blackbody references. To continue with the calibration, we compute the spectral responsivity based on the previous results, from which, the calibrated ambient blackbody (ABB), hot blackbody (HBB), and scene spectra can be obtained. We now can estimate the noise equivalent spectral radiance (NESR) from the calibrated ABB and HBB spectra. The correction schemes that compensate for the fore-optics offsets and off-axis effects are also implemented. In the third block, we developed an efficient method of generating pixel performance assessments. In addition, a

  19. Lightweight optical barrel assembly structures for large deployable space telescopes

    NASA Astrophysics Data System (ADS)

    Warren, Peter A.; Silver, Mark J.; Dobson, Benjamin J.

    2009-08-01

    Future space based telescopes will need apertures and focal lengths that exceed the dimensions of the launch vehicle shroud. In addition to deploying the primary mirror and secondary mirror support structure, these large telescopes must also deploy the stray light and thermal barriers needed to ensure proper telescope performance. The authors present a deployable light and thermal optical barrel assembly approach for a very large telescope with a variable sun angle and fast slew rate. The Strain Energy Deployable Optical Barrel Assembly (SEDOBA) uses elastic composite hinges to power the deployment of a hierarchical truss structure that supports the thermal and stray light shroud material that form the overall system. The paper describes the overall design approach, the key component technologies, and the design and preliminary testing of a self deploying scale model prototype.

  20. Triple-barrel aorta: dissection of a healed aortic dissection.

    PubMed

    Lie, J T

    1982-08-01

    An unusual case of a triple-barrel aorta in a 51-year-old woman is described. The patient first had a spontaneous type I dissection of the aorta and acute aortic insufficiency, for which she underwent aortic valve replacement and Dacron graft replacement of the ascending aorta. She remained asymptomatic for five years with a healed aortic dissection (double-barrel aorta) distal to the graft. She then underwent a second operation for repair and poppet replacement of the malfunctioned prosthesis. Postoperative cardiac failure necessitated the use of a counterpulsation intra-aortic balloon catheter, which entered and dissected the wall of the false lumen, thus creating a triple-lumen aorta.

  1. Barrel cortex membrane potential dynamics in social touch.

    PubMed

    Lenschow, Constanze; Brecht, Michael

    2015-02-18

    The impact of social stimuli on the membrane potential dynamics of barrel cortex neurons is unknown. We obtained in vivo whole-cell recordings in the barrel cortex of head-restrained rats while they interacted with conspecifics. Social touch was associated with a depolarization and large membrane potential fluctuations locked to the rat's whisking. Both depolarization and membrane potential fluctuations were already observed prior to contact and did not occur during free whisking. This anticipatory pre-contact depolarization was not seen in passive social touch in anesthetized animals. The membrane potential fluctuations locked to the rat's whisking observed in interactions with awake conspecifics were larger than those seen for whisking onto nonconspecific stimuli (stuffed rats, objects, and the experimenter's hand). Responses did not correlate with whisker movement parameters. We conclude that responses to social touch differ from conventional tactile responses in (1) amplitude, (2) locking to whisking, and (3) pre-contact membrane potential changes.

  2. Simulation and reconstruction of the PANDA Barrel DIRC

    NASA Astrophysics Data System (ADS)

    Dzhygadlo, R.; Gerhardt, A.; Go¨tzen, K.; Hohler, R.; Kalicy, G.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Dodokhov, V. Kh.; Britting, A.; Eyrich, W.; Lehmann, A.; Uhlig, F.; Düren, M.; Fo¨hl, K.; Hayrapetyan, A.; Kro¨ck, B.; Merle, O.; Rieke, J.; Cowie, E.; Keri, T.; Montgomery, R.; Rosner, G.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Sfienti, C.; Thiel, M.; Bühler, P.; Gruber, L.; Marton, J.; Suzuki, K.

    2014-12-01

    Hadronic particle identification (PID) in the barrel region of the PANDA experiment at the new Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt will be provided by a DIRC (Detection of Internally Reflected Cherenkov light) counter. To optimize the performance and reduce the detector cost, detailed simulations of different design elements, such as the width of the radiators, the shape of the expansion volume, and the type of focusing system, were performed using Geant. Custom reconstruction algorithms were developed to match the detector geometry. We will discuss the single photon resolution and photon yield as well as the PID performance for the Barrel DIRC baseline design and several detector design options.

  3. Refractory Metal Liner Processing for M242 Medium Caliber Barrels

    DTIC Science & Technology

    2013-01-01

    public release; distribution unlimited. 13. SUPPLEMENTARY NOTES 14. ABSTRACT The process for attaching a refractory metal liner to a gun tube...known as Gun Liner Emplacement with an Elastomeric Material (GLEEM) has been developed for the 25 mm Bushmaster medium caliber cannon. Stellite 25 liners...liner stretching. 15. SUBJECT TERMS refractory metal, gun tube liner, M242 barrel, elastomer, liner processing 16. SECURITY CLASSIFICATION OF: 17

  4. NASA Marshall Space Flight Center Barrel-Shaped Asymmetrical Capacitor

    NASA Technical Reports Server (NTRS)

    Campbell, J. W.; Carruth, M. R.; Edwards, D. L.; Finchum, A.; Maxwell, G.; Nabors, S.; Smalley, L.; Huston, D.; Ila, D.; Zimmerman, R.

    2004-01-01

    The NASA Barrel-Shaped Asymmetrical Capacitor (NACAP) has been extensively tested at NASA Marshall Space Flight Center and the National Space Science and Technology Center. Trichel pulse emission was first discovered here. The NACAP is a magnetohydrodynamic device for electric propulsion. In air it requires no onboard propellant nor any moving parts. No performance was observed in hard vacuum. The next step shall be optimizing the technology for future applications.

  5. Cellular organization of cortical barrel columns is whisker-specific.

    PubMed

    Meyer, Hanno S; Egger, Robert; Guest, Jason M; Foerster, Rita; Reissl, Stefan; Oberlaender, Marcel

    2013-11-19

    The cellular organization of the cortex is of fundamental importance for elucidating the structural principles that underlie its functions. It has been suggested that reconstructing the structure and synaptic wiring of the elementary functional building block of mammalian cortices, the cortical column, might suffice to reverse engineer and simulate the functions of entire cortices. In the vibrissal area of rodent somatosensory cortex, whisker-related "barrel" columns have been referred to as potential cytoarchitectonic equivalents of functional cortical columns. Here, we investigated the structural stereotypy of cortical barrel columns by measuring the 3D neuronal composition of the entire vibrissal area in rat somatosensory cortex and thalamus. We found that the number of neurons per cortical barrel column and thalamic "barreloid" varied substantially within individual animals, increasing by ∼2.5-fold from dorsal to ventral whiskers. As a result, the ratio between whisker-specific thalamic and cortical neurons was remarkably constant. Thus, we hypothesize that the cellular architecture of sensory cortices reflects the degree of similarity in sensory input and not columnar and/or cortical uniformity principles.

  6. Development and Critical Period Plasticity of the Barrel Cortex

    PubMed Central

    Erzurumlu, Reha S.; Gaspar, Patricia

    2012-01-01

    In primary sensory neocortical areas of the mammals, the distribution of sensory receptors is mapped with topographic precision and amplification in proportion to the peripheral receptor density. The visual, somatosensory and auditory cortical maps are established during a critical period in development. Throughout this window in time, the developing cortical maps are vulnerable to deleterious effects of sense organ damage or sensory deprivation. The rodent barrel cortex offers an invaluable model system to investigate mechanisms underlying the formation of topographic maps and their plasticity during development. Five rows of mystacial vibrissa (whisker) follicles on the snout and an array of sinus hairs are represented by layer IV neural modules (“barrels”) and thalamocortical axon terminals in the primary somatosensory cortex. Perinatal damage to the whiskers or the sensory nerve innervating them irreversibly alters the structural organization of the barrels. Earlier studies emphasized the role of sensory periphery in dictating whisker-specific brain maps and patterns. Recent advances in molecular genetics and analyses of genetically altered mice allow new insights into neural pattern formation in the neocortex and the mechanisms underlying critical period plasticity. Here we review the development and patterning of the barrel cortex and the critical period plasticity. PMID:22607000

  7. The representation of social facial touch in rat barrel cortex.

    PubMed

    Bobrov, Evgeny; Wolfe, Jason; Rao, Rajnish P; Brecht, Michael

    2014-01-06

    Controlled presentation of stimuli to anesthetized [1] or awake [2] animals suggested that neurons in sensory cortices respond to elementary features [3, 4], but we know little about neuronal responses evoked by social interactions. Here we investigate processing in the barrel cortex of rats engaging in social facial touch [5, 6]. Sensory stimulation by conspecifics differs from classic whisker stimuli such as deflections, contact poles [7, 8], or textures [9, 10]. A large fraction of barrel cortex neurons responded to facial touch. Social touch responses peaked when animals aligned their faces and contacted each other by multiple whiskers with small, irregular whisker movements. Object touch was associated with larger, more regular whisker movements, and object responses were weaker than social responses. Whisker trimming abolished responses. During social touch, neurons in males increased their firing on average by 44%, while neurons in females increased their firing by only 19%. In females, socially evoked and ongoing firing rates were more than 1.5-fold higher in nonestrus than in estrus. Barrel cortex represented socially different contacts by distinct firing rates, and the variation of activity with sex and sexual status could contribute to the generation of gender-specific neural constructs of conspecifics.

  8. Rapid, learning-induced inhibitory synaptogenesis in murine barrel field

    PubMed Central

    Jasinska, M.; Siucinska, E.; Cybulska-Klosowicz, A.; Pyza, E.; Furness, D.N.; Kossut, M.; Glazewski, S.

    2010-01-01

    The structure of neurones changes during development and in response to injury or alteration in sensory experience. Changes occur in the number, shape and dimensions of dendritic spines together with their synapses. However, precise data on these changes in response to learning are sparse. Here, we show using quantitative transmission electron microscopy that a simple form of learning involving mystacial vibrissae results in about 70% increase in the density of inhibitory synapses on spines of neurones located in layer IV barrels that represent the stimulated vibrissae. The spines contain one asymmetrical (excitatory) and one symmetrical (inhibitory) synapse (double-synapse spines) and their density increases 3-fold due to learning with no apparent change in the density of asymmetrical synapses. This effect seems to be specific for learning as pseudoconditioning (where the conditioned and unconditioned stimuli are delivered at random) does not lead to the enhancement of symmetrical synapses, but instead results in an up-regulation of asymmetrical synapses on spines. Symmetrical synapses of cells located in barrels receiving the conditioned stimulus show also a greater concentration of γ-amino-butyric acid (GABA) in their presynaptic terminals. These results indicate that the immediate effect of classical conditioning in the ‘conditioned’ barrels is rapid, pronounced and inhibitory. PMID:20089926

  9. Recent advances in the evaluation of the oxygen transfer rate in oak barrels.

    PubMed

    del Alamo-Sanza, María; Nevares, Ignacio

    2014-09-03

    The entry of atmospheric oxygen into wine barrels is a desirable characteristic of the wine aging process. The oxygen transfer rate regulates changes in wine affecting aging rates because some barrels may undergo a greater wine oxygenation. This study measured the transfer rate and oxygen distribution within a barrel. The analysis confirmed the presence of a dissolved oxygen concentration gradient in the liquid, with greater concentrations near the bung. The study of the transfer rate of oxygen over time, in 12 barrels of different types, showed that wetting wood reduces oxygen diffusion and the oxygen transfer rate (OTR). These results are the first to determine the kinetics of oxygen entry into wine barrels and can be used to quantify the annual rate of oxygen entry into wine barrels.

  10. Barrel maturation, oak alternatives and micro-oxygenation: influence on red wine aging and quality.

    PubMed

    Oberholster, A; Elmendorf, B L; Lerno, L A; King, E S; Heymann, H; Brenneman, C E; Boulton, R B

    2015-04-15

    The impact of micro-oxygenation (MOX) in conjunction with a variety of oak alternatives on phenolic composition and red wine aging was investigated and compared with traditional barrel aging. Although several studies concluded that MOX give similar results to barrel aging, few have compared them directly and none directly compared MOX with and without wood alternatives and barrel aging. Results confirmed that MOX had a positive effect on colour density, even after 5 months of bottle aging. This is supported by an increase in polymeric phenol and pigment content not only with aging but in the MOX compared to barrel matured wine treatments. Descriptive analysis showed that MOX in combination with wood alternatives such as oak chips and staves could mimic short term (six months) barrel aging in new American and French oak barrels in regards to sensory characteristics.

  11. Processing of Niobium-Lined M240 Machine Gun Barrels

    DTIC Science & Technology

    2014-11-01

    produce at least a 0.001 inch (0.025 mm) expansion of the steel cylinder to allow the mandrel to fit inside the liner . The other dimensions were...barrel blank and niobium liner is shown in Fig. 2. 4 Fig. 2 Gun tube and niobium- liner hardware 3. Experimental Approach 3.1 Load Cylinder ...The load cylinder outer diameter was taken to be 0.308 inch (7.82 mm), giving enough clearance between it and the niobium liner to ensure easy

  12. Innovative active control of gun barrels using smart materials

    NASA Astrophysics Data System (ADS)

    Mattice, Michael S.; LaVigna, Chris

    1997-06-01

    The accuracy of stabilized, turreted gun systems like the 120mm gun on the M1A2 Abrams tank and the 30mm gun on the Apache helicopter are limited by, among other things, structural flexure of the gun barrel and support structure. An advanced actuation system based on piezoelectric translators and an optical fiber strain sensing system are described in conjunction with a rapid prototyping workstation for the design of distributed parameter control systems to actively minimize the effects of vibrations caused by traversing rough terrain or weapon firing.

  13. Optical System of the STAR Barrel Electromagnetic Calorimeter

    NASA Astrophysics Data System (ADS)

    Grachov, O. A.

    2000-04-01

    The STAR Barrel Electromagnetic Calorimeter(BEMC) is a sampling calorimeter and the core of structure consist of a lead-scintillator plate stack. The plastic scintillator in the form of Mega-tile with 40 optically isolated tiles in each layer. The tile/fiber system uses a wavelength shifting fiber to read out the signal of a tile and a optical clear fiber carry the light through the magnet structure to the electronic-PMT box. A discription of the Optical system of BEMC is presented along with a current status of the quality control program of the calorimeter production.

  14. Theoretical Exploration of Barrel-Shaped Drops on Cactus Spines.

    PubMed

    Luo, Cheng

    2015-11-03

    To survive an arid environment, desert cacti are capable of harvesting water from fog by transporting condensed water drops using their spines. Cactus spines have a conical shape. In this work, on the basis of the difference of liquid pressure, a new theoretical model has been developed for a barrel-shaped liquid drop on a conical wire. This model is further simplified to interpret the effects of contact angles, conical angle, surface microgrooves, and gravity on the drop movement along a cactus spine.

  15. Silicon photomultiplier characterization for the GlueX barrel calorimeter

    SciTech Connect

    F. Barbosa, J.E. McKisson, J. McKisson, Y. Qiang, E. Smith, C. Zorn

    2012-12-01

    GlueX is a new detector being constructed at Jefferson Laboratory to study gluonic excitations and confinement via the detection of exotic meson states. The hermetic detector includes a barrel calorimeter where the photodetectors must operate in a high magnetic field exceeding 0.5 T. After extensive tests with a variety of sensors, the chosen photodetector will be a custom silicon photomultiplier (SiPM) array manufactured by Hamamatsu Corporation. This paper will focus on the characterization of the first 80 production samples of these SiPMs, including dark rate, photodetection efficiency (PDE), crosstalk, response uniformity and radiation tolerance.

  16. Silicon strip staves and petals for the ATLAS Upgrade tracker of the HL-LHC

    NASA Astrophysics Data System (ADS)

    Díez, Sergio; Atlas Collaboration

    2013-01-01

    This paper describes the baseline integration structures for the silicon strip sensors to be used in the ATLAS detector for the Phase-II upgrade of the Large Hadron Collider (LHC) machine, the so-called High Luminosity LHC (HL-LHC). Highly modular structures have been developed for the integration of the silicon strips sensors, readout electronics, cooling, and support structures, called 'staves' for the barrel region and 'petals' for the end-caps of the ATLAS strips tracker. This work describes the status of the current prototypes, the building procedure, designed for mass production even at a prototyping stage, and their electrical performances.

  17. Creation of active TIM barrel enzymes through genetic fusion of half-barrel domain constructs derived from two distantly related glycosyl hydrolases.

    PubMed

    Sharma, Prerna; Kaila, Pallavi; Guptasarma, Purnananda

    2016-12-01

    Diverse unrelated enzymes that adopt the beta/alpha (or TIM) barrel topology display similar arrangements of beta/alpha units placed in a radial eight-fold symmetry around the barrel's axis. The TIM barrel was originally thought to be a single structural domain; however, it is now thought that TIM barrels arose from duplication and fusion of smaller half-barrels consisting of four beta/alpha units. We describe here the design, expression and purification, as well as characterization of folding, activity and stability, of chimeras of two TIM barrel glycosyl hydrolases, made by fusing different half-barrel domains derived from an endoglucanase from Clostridium cellulolyticum, CelCCA and a beta-glucosidase from Pyrococcus furiosus, CelB. We show that after refolding following purification from inclusion bodies, the two half-barrel fusion chimeras (CelCCACelB and CelBCelCCA) display catalytic activity although they assemble into large soluble oligomeric aggregated species containing chains of mixed beta and alpha structure. CelBCelCCA displays hyperthermophile-like structural stability as well as significant stability to chemical denaturation (Cm of 2.6 m guanidinium hydrochloride), whereas CelCCACelB displays mesophile-like stability (Tm of ~ 71 °C). The endoglucanase activities of both chimeras are an order of magnitude lower than those of CelB or CelCCA, whereas the beta-glucosidase activity of CelBCelCCA is about two orders of magnitude lower than that of CelB. The chimera CelCCACelB shows no beta-glucosidase activity. Our results demonstrate that half-barrel domains from unrelated sources can fold, assemble and function, with scope for improvement.

  18. Oak Stave Oxygen Permeation: A New Tool To Make Barrels with Different Wine Oxygenation Potentials.

    PubMed

    Nevares, Ignacio; Del Alamo-Sanza, María

    2015-01-22

    The aim of this study was to classify rough staves according to their permeability to oxygen by measuring their transmission rate to assess the capacity to build barrels with high and low oxygen transmission rates (OTRs). The ability to assess the OTR would be important for better understanding and controlling the aging process of wine in barrels. To accomplish this, we built a device that measures the OTR of rough staves under the same conditions as those in a full barrel, in which the stave is in contact with a liquid solution on one face and with a diffusing gas on the opposite face. A total of 69 rough staves were classified to yield a high-OTR group, with a mean 2.6 times higher than the mean of the low-OTR group. A high-OTR barrel and a low-OTR barrel were constructed, and we confirmed that the stave OTR decreased between 3- and 4.5-fold in the barrels and that the high-OTR barrel allowed the entry of twice the concentration of oxygen compared to the low-OTR barrel. These results confirmed the capacity to classify rough staves and build barrels with different OTRs.

  19. Parallel access alignment network with barrel switch implementation for d-ordered vector elements

    NASA Technical Reports Server (NTRS)

    Barnes, George H. (Inventor)

    1980-01-01

    An alignment network between N parallel data input ports and N parallel data outputs includes a first and a second barrel switch. The first barrel switch fed by the N parallel input ports shifts the N outputs thereof and in turn feeds the N-1 input data paths of the second barrel switch according to the relationship X=k.sup.y modulo N wherein x represents the output data path ordering of the first barrel switch, y represents the input data path ordering of the second barrel switch, and k equals a primitive root of the number N. The zero (0) ordered output data path of the first barrel switch is fed directly to the zero ordered output port. The N-1 output data paths of the second barrel switch are connected to the N output ports in the reverse ordering of the connections between the output data paths of the first barrel switch and the input data paths of the second barrel switch. The second switch is controlled by a value m, which in the preferred embodiment is produced at the output of a ROM addressed by the value d wherein d represents the incremental spacing or distance between data elements to be accessed from the N input ports, and m is generated therefrom according to the relationship d=k.sup.m modulo N.

  20. Dynamic response of a lightweight gun barrel during a firing-pressure transient

    SciTech Connect

    McGrath, S.V.; Phillips, L.P. Jr.

    1990-04-01

    This report presents the results of a nonlinear, dynamic structural analysis of a gun barrel design during a firing-pressure transient. The final design was defined by an iterative design/analysis process in which the effects of design modifications were compared with established design criteria. The ADINA finite element code was used to analyze the titanium/carbon composite gun barrel assembly for a maximum transient pressure of 29,000 psi. The gun barrel weighs 42 lb; however, a significant potential exists for weight savings in future gun barrel designs. 2 refs., 41 figs.

  1. Drag Measurements of a Protruding .50-caliber Machine Gun with Barrel Jacket Removed

    NASA Technical Reports Server (NTRS)

    Luoma, Arvo A.

    1943-01-01

    Tests were made in 8-ft high-speed wind tunnel to determine the drag reduction possible by eliminating the barrel jacket of a protruding 50-caliber aircraft gun. It was found that the drag of a standard aircraft gun protruding into the air stream at right angles to the flow can be reduced by 23% by discarding the barrel jacket. At 300 mph and sea-level conditions, this amounts to a decrease in drag of from 83 to 64 pounds. A rough surface finish on the barrel was found to have no adverse effects on the drag of the barrel, the drag being actually less at high Mach Numbers.

  2. Double Barrel In Situ Recanalization of Thrombosed Nonretrievable IVC filter.

    PubMed

    Banerjee, Shubhabrata; Patel, Hiten M; Sheorain, Virender K; Grover, Tarun; Parakh, Rajiv

    2016-05-01

    We report a case of endovascular recanalization of complete thrombotic occlusion of the inferior vena cava (IVC) and bilateral iliac veins using the architectural knowledge of the in situ permanent IVC filter in a 23-year-old male. The infrarenal permanent IVC filter was TRAPEASE permanent vena cava filter (Cordis) placed at an outstation hospital for pulmonary embolism. Being permanent variant of filter, percutaneous removal was not possible. The patient had severe venous claudication and an attempt to recanalize the blocked filter was considered, in view of the age no justifiable indication for a long-term filter. After pharmacomechanical catheter-directed thrombolysis, there was residual focal flow-limiting thrombus within the filter. The design of the Trapease Cordis filter was instrumental in our decision to attempt to recanalize the filter in situ using 2 parallel stents with the filter struts as anchoring pillars in a double-barrel alignment. In similar cases of persistent Trapease filter-related thrombotic occlusion of the IVC, this double barrel in situ recanalization shall be a viable alternative to the well-described technique of crushing the filter and recanalizing it with a single stent.

  3. EMIC Waves Observed in Conjunction with BARREL Electron Precipitation

    NASA Astrophysics Data System (ADS)

    Weaver, C.; Engebretson, M. J.; Lessard, M.; Halford, A. J.; Millan, R. M.; Horne, R. B.; Singer, H. J.

    2013-05-01

    Electromagnetic ion-cyclotron (EMIC) waves have been detected at Halley, Antarctica coinciding with observations of electron precipitation on high altitude balloons from the Balloon Array for RBSP Relativistic Electron Losses (BARREL) campaign launched in early 2013 from SANAE IV and Halley Station. The balloons were launched such that both spatial and temporal properties of electron precipitation might be examined. With a magnetic foot point mapped to the radiation belts, Halley is an ideal location to capture ground based signatures that coincide with electron precipitation. EMIC waves have been shown, both theoretically and through statistical surveys, to pitch angle scatter energetic protons and relativistic electrons via cyclotron resonance and contribute to radiation belt dynamics. EMIC waves were detected at Halley Station 23 times from 12 Jan - 4 Feb with 17 of those waves occurring during times when at least one BARREL balloon observed precipitation in one or more energy channels. High resolution magnetometer data from GOES 13 (which has a magnetic foot point near WAIS Divide, Antarctica-located about 2.5 hours, in MLT, west of Halley) show similar EMIC wave structure and frequency to 9 waves observed at Halley, suggesting the source region extended to at least the longitude and L value of GOES 13 during some events. The ground observed waves appeared in all local times and during both quiet and disturbed intervals.

  4. Level 1 Radiance Scaling and Conditioning Algorithm Theoretical Basis

    NASA Technical Reports Server (NTRS)

    Bruegge, C.; Diner, D.; Korechoff, R.; Lee, M.

    2000-01-01

    The Algorithm Theoretical Basis (ATB) document describes the algorithms used to produce the Multi-angle Imaging SpectroRadiometer (MISR) Level 1B1 Radiometric Product, and certain parameters of the Level 1A Reformatted Annotated Product.

  5. Algorithm and implementation of muon trigger and data transmission system for barrel-endcap overlap region of the CMS detector

    NASA Astrophysics Data System (ADS)

    Zabolotny, W. M.; Byszuk, A.

    2016-03-01

    The CMS experiment Level-1 trigger system is undergoing an upgrade. In the barrel-endcap transition region, it is necessary to merge data from 3 types of muon detectors—RPC, DT and CSC. The Overlap Muon Track Finder (OMTF) uses the novel approach to concentrate and process those data in a uniform manner to identify muons and their transversal momentum. The paper presents the algorithm and FPGA firmware implementation of the OMTF and its data transmission system in CMS. It is foreseen that the OMTF will be subject to significant changes resulting from optimization which will be done with the aid of physics simulations. Therefore, a special, high-level, parameterized HDL implementation is necessary.

  6. Tapered laser rods as a means of minimizing the path length of trapped barrel mode rays

    DOEpatents

    Beach, Raymond J.; Honea, Eric C.; Payne, Stephen A.; Mercer, Ian; Perry, Michael D.

    2005-08-30

    By tapering the diameter of a flanged barrel laser rod over its length, the maximum trapped path length of a barrel mode can be dramatically reduced, thereby reducing the ability of the trapped spontaneous emission to negatively impact laser performance through amplified spontaneous emission (ASE). Laser rods with polished barrels and flanged end caps have found increasing application in diode array end-pumped laser systems. The polished barrel of the rod serves to confine diode array pump light within the rod. In systems utilizing an end-pumping geometry and such polished barrel laser rods, the pump light that is introduced into one or both ends of the laser rod, is ducted down the length of the rod via the total internal reflections (TIRs) that occur when the light strikes the rod's barrel. A disadvantage of using polished barrel laser rods is that such rods are very susceptible to barrel mode paths that can trap spontaneous emission over long path lengths. This trapped spontaneous emission can then be amplified through stimulated emission resulting in a situation where the stored energy available to the desired lasing mode is effectively depleted, which then negatively impacts the laser's performance, a result that is effectively reduced by introducing a taper onto the laser rod.

  7. Modeling of gun barrel surface erosion: Historic perspective

    SciTech Connect

    Buckingham, A.C.

    1996-08-01

    Results and interpretations of numerical simulations of some dominant processes influencing gun barrel propellant combustion and flow-induced erosion are presented. Results include modeled influences of erosion reduction techniques such as solid additives, vapor phase chemical modifications, and alteration of surface solid composition through use of thin coatings. Precedents and historical perspective are provided with predictions from traditional interior ballistics compared to computer simulations. Accelerating reactive combustion flow, multiphase and multicomponent transport, flow-to-surface thermal/momentum/phase change/gas-surface chemical exchanges, surface and micro-depth subsurface heating/stress/composition evolution and their roles in inducing surface cracking, spall, ablation, melting, and vaporization are considered. Recognition is given to cyclic effects of previous firing history on material preconditioning. Current perspective and outlook for future are based on results of a US Army-LLNL erosion research program covering 7 y in late 1970s. This is supplemented by more recent research on hypervelocity electromagnetic projectile launchers.

  8. Alcohol dehydrogenase polymorphism in barrel cactus populations of Drosophila mojavensis.

    PubMed

    Cleland, S; Hocutt, G D; Breitmeyer, C M; Markow, T A; Pfeiler, E

    1996-07-01

    Starch gel electrophoresis revealed that the alcohol dehydrogenase (ADH-2) locus was polymorphic in two populations (from Agua Caliente, California and the Grand Canyon, Arizona) of cactophilic Drosophila mojavensis that utilize barrel cactus (Ferocactus acanthodes) as a host plant. Electromorphs representing products of a slow (S) and a fast (F) allele were found in adult flies. The frequency of the slow allele was 0.448 in flies from Agua Caliente and 0.659 in flies from the Grand Canyon. These frequencies were intermediate to those of the low (Baja California peninsula, Mexico) and high (Sonora, Mexico and southern Arizona) frequency Adh-2S populations of D. mojavensis that utilize different species of host cacti.

  9. Neuronal activity in rat barrel cortex underlying texture discrimination.

    PubMed

    von Heimendahl, Moritz; Itskov, Pavel M; Arabzadeh, Ehsan; Diamond, Mathew E

    2007-11-01

    Rats and mice palpate objects with their whiskers to generate tactile sensations. This form of active sensing endows the animals with the capacity for fast and accurate texture discrimination. The present work is aimed at understanding the nature of the underlying cortical signals. We recorded neuronal activity from barrel cortex while rats used their whiskers to discriminate between rough and smooth textures. On whisker contact with either texture, firing rate increased by a factor of two to ten. Average firing rate was significantly higher for rough than for smooth textures, and we therefore propose firing rate as the fundamental coding mechanism. The rat, however, cannot take an average across trials, but must make an immediate decision using the signals generated on each trial. To estimate single-trial signals, we calculated the mutual information between stimulus and firing rate in the time window leading to the rat's observed choice. Activity during the last 75 ms before choice transmitted the most informative signal; in this window, neuronal clusters carried, on average, 0.03 bits of information about the stimulus on trials in which the rat's behavioral response was correct. To understand how cortical activity guides behavior, we examined responses in incorrect trials and found that, in contrast to correct trials, neuronal firing rate was higher for smooth than for rough textures. Analysis of high-speed films suggested that the inappropriate signal on incorrect trials was due, at least in part, to nonoptimal whisker contact. In conclusion, these data suggest that barrel cortex firing rate on each trial leads directly to the animal's judgment of texture.

  10. Surround suppression and sparse coding in visual and barrel cortices

    PubMed Central

    Sachdev, Robert N. S.; Krause, Matthew R.; Mazer, James A.

    2012-01-01

    During natural vision the entire retina is stimulated. Likewise, during natural tactile behaviors, spatially extensive regions of the somatosensory surface are co-activated. The large spatial extent of naturalistic stimulation means that surround suppression, a phenomenon whose neural mechanisms remain a matter of debate, must arise during natural behavior. To identify common neural motifs that might instantiate surround suppression across modalities, we review models of surround suppression and compare the evidence supporting the competing ideas that surround suppression has either cortical or sub-cortical origins in visual and barrel cortex. In the visual system there is general agreement lateral inhibitory mechanisms contribute to surround suppression, but little direct experimental evidence that intracortical inhibition plays a major role. Two intracellular recording studies of V1, one using naturalistic stimuli (Haider et al., 2010), the other sinusoidal gratings (Ozeki et al., 2009), sought to identify the causes of reduced activity in V1 with increasing stimulus size, a hallmark of surround suppression. The former attributed this effect to increased inhibition, the latter to largely balanced withdrawal of excitation and inhibition. In rodent primary somatosensory barrel cortex, multi-whisker responses are generally weaker than single whisker responses, suggesting multi-whisker stimulation engages similar surround suppressive mechanisms. The origins of suppression in S1 remain elusive: studies have implicated brainstem lateral/internuclear interactions and both thalamic and cortical inhibition. Although the anatomical organization and instantiation of surround suppression in the visual and somatosensory systems differ, we consider the idea that one common function of surround suppression, in both modalities, is to remove the statistical redundancies associated with natural stimuli by increasing the sparseness or selectivity of sensory responses. PMID:22783169

  11. Quality assurance plan for Atlas raw steel sheets

    SciTech Connect

    Guarino, V.

    1998-02-10

    As part of a collaborative experimental High Energy Physics experiment at the LHC Facility, CERN Laboratory, Geneva, Switzerland, a group of US institutions has accepted the responsibility for constructing a large portion of the calorimeter for this experiment. This device is referred to as the Tile Calorimeter. The Tile Calorimeter has three major elements, a large center section (Barrel), and two end sections (Extended Barrel). The US group will be responsible for the construction of one of these extended barrel sections. All of the components that are required to construct this device will be fabricated in the US over a period of three years commencing in 1998. Another similar element and the barrel element will be constructed in both eastern and western Europe by parallel groups. The extended barrel is a cylindrical device approximately 8.5 meters (28 ft.) OD x 4.5 meters (14 ft.) ID, made up of 64 wedges. Each of these wedges is constructed by bolting submodules to a strongback girder. Each submodule is constructed of a series of sheets that are welded and glued together. The purpose of this Quality Assurance document is to insure that the raw steel sheet meets the magnetic, strength, and stamping requirements for the Atlas tile Calorimeter. In order to meet these requirements, a set of specifications has been developed and are described below. These specifications must be met by the steel supplier as well as an independent testing plan to be performed by Argonne National Laboratory (ANL). The independent testing is divided into three parts: on-site inspection of the cold rolling process and subsequent slitting of the coil into individual sheets; off-site tests on the magnetic properties of the steel sheet; off-site tests of the internal stress of the sheet.

  12. The ATLAS Diamond Beam Monitor: Luminosity detector at the LHC

    NASA Astrophysics Data System (ADS)

    Schaefer, D. M.

    2016-07-01

    After the first three years of the LHC running, the ATLAS experiment extracted its pixel detector system to refurbish and re-position the optical readout drivers and install a new barrel layer of pixels. The experiment has also taken advantage of this access to install a set of beam monitoring telescopes with pixel sensors, four each in the forward and backward regions. These telescopes are based on chemical vapor deposited (CVD) diamond sensors to survive in this high radiation environment without needing extensive cooling. This paper describes the lessons learned in construction and commissioning of the ATLAS Diamond Beam Monitor (DBM). We show results from the construction quality assurance tests and commissioning performance, including results from cosmic ray running in early 2015.

  13. The ATLAS ITk strip detector. Status of R&D

    NASA Astrophysics Data System (ADS)

    García Argos, Carlos

    2017-02-01

    While the LHC at CERN is ramping up luminosity after the discovery of the Higgs Boson in the ATLAS and CMS experiments in 2012, upgrades to the LHC and experiments are planned. The major upgrade is foreseen for 2024, with a roughly tenfold increase in luminosity, resulting in corresponding increases in particle rates and radiation doses. In ATLAS the entire Inner Detector will be replaced for Phase-II running with an all-silicon system. This paper concentrates on the strip part. Its layout foresees low-mass and modular yet highly integrated double-sided structures for the barrel and forward region. The design features conceptually simple modules made from electronic hybrids glued directly onto the silicon. Modules will then be assembled on both sides of large carbon-core structures with integrated cooling and electrical services.

  14. The TIM Barrel Architecture Facilitated the Early Evolution of Protein-Mediated Metabolism.

    PubMed

    Goldman, Aaron David; Beatty, Joshua T; Landweber, Laura F

    2016-01-01

    The triosephosphate isomerase (TIM) barrel protein fold is a structurally repetitive architecture that is present in approximately 10% of all enzymes. It is generally assumed that this ubiquity in modern proteomes reflects an essential historical role in early protein-mediated metabolism. Here, we provide quantitative and comparative analyses to support several hypotheses about the early importance of the TIM barrel architecture. An information theoretical analysis of protein structures supports the hypothesis that the TIM barrel architecture could arise more easily by duplication and recombination compared to other mixed α/β structures. We show that TIM barrel enzymes corresponding to the most taxonomically broad superfamilies also have the broadest range of functions, often aided by metal and nucleotide-derived cofactors that are thought to reflect an earlier stage of metabolic evolution. By comparison to other putatively ancient protein architectures, we find that the functional diversity of TIM barrel proteins cannot be explained simply by their antiquity. Instead, the breadth of TIM barrel functions can be explained, in part, by the incorporation of a broad range of cofactors, a trend that does not appear to be shared by proteins in general. These results support the hypothesis that the simple and functionally general TIM barrel architecture may have arisen early in the evolution of protein biosynthesis and provided an ideal scaffold to facilitate the metabolic transition from ribozymes, peptides, and geochemical catalysts to modern protein enzymes.

  15. Organization of myelin in the mouse somatosensory barrel cortex and the effects of sensory deprivation.

    PubMed

    Barrera, Kyrstle; Chu, Philip; Abramowitz, Jason; Steger, Robert; Ramos, Raddy L; Brumberg, Joshua C

    2013-04-01

    In rodents, the barrel cortex is a specialized area within the somatosensory cortex that processes signals from the mystacial whiskers. We investigated the normal development of myelination in the barrel cortex of mice, as well as the effects of sensory deprivation on this pattern. Deprivation was achieved by trimming the whiskers on one side of the face every other day from birth. In control mice, myelin was not present until postnatal day 14 and did not show prominence until postnatal day 30; adult levels of myelination were reached by the end of the second postnatal month. Unbiased stereology was used to estimate axon density in the interbarrel septal region and barrel walls as well as the barrel centers. Myelin was significantly more concentrated in the interbarrel septa/barrel walls than in the barrel centers in both control and sensory-deprived conditions. Sensory deprivation did not impact the onset of myelination but resulted in a significant decrease in myelinated axons in the barrel region and decreased the amount of myelin ensheathing each axon. Visualization of the oligodendrocyte nuclear marker Olig2 revealed a similar pattern of myelin as seen using histochemistry, but with no significant changes in Olig2+ nuclei following sensory deprivation. Consistent with the anatomical results showing less myelination, local field potentials revealed slower rise times following trimming. Our results suggest that myelination develops relatively late and can be influenced by sensory experience.

  16. Mitochondria can recognize and assemble fragments of a β-barrel structure

    PubMed Central

    Müller, Jonas E.N.; Papic, Drazen; Ulrich, Thomas; Grin, Iwan; Schütz, Monika; Oberhettinger, Philipp; Tommassen, Jan; Linke, Dirk; Dimmer, Kai S.; Autenrieth, Ingo B.; Rapaport, Doron

    2011-01-01

    β-barrel proteins are found in the outer membranes of eukaryotic organelles of endosymbiotic origin as well as in the outer membrane of Gram-negative bacteria. Precursors of mitochondrial β-barrel proteins are synthesized in the cytosol and have to be targeted to the organelle. Currently, the signal that assures their specific targeting to mitochondria is poorly defined. To characterize the structural features needed for specific mitochondrial targeting and to test whether a full β-barrel structure is required, we expressed in yeast cells the β-barrel domain of the trimeric autotransporter Yersinia adhesin A (YadA). Trimeric autotransporters are found only in prokaryotes, where they are anchored to the outer membrane by a single 12-stranded β-barrel structure to which each monomer is contributing four β-strands. Importantly, we found that YadA is solely localized to the mitochondrial outer membrane, where it exists in a native trimeric conformation. These findings demonstrate that, rather than a linear sequence or a complete β-barrel structure, four β-strands are sufficient for the mitochondria to recognize and assemble a β-barrel protein. Remarkably, the evolutionary origin of mitochondria from bacteria enables them to import and assemble even proteins belonging to a class that is absent in eukaryotes. PMID:21460184

  17. Structural insight into the biogenesis of β-barrel membrane proteins.

    PubMed

    Noinaj, Nicholas; Kuszak, Adam J; Gumbart, James C; Lukacik, Petra; Chang, Hoshing; Easley, Nicole C; Lithgow, Trevor; Buchanan, Susan K

    2013-09-19

    β-barrel membrane proteins are essential for nutrient import, signalling, motility and survival. In Gram-negative bacteria, the β-barrel assembly machinery (BAM) complex is responsible for the biogenesis of β-barrel membrane proteins, with homologous complexes found in mitochondria and chloroplasts. Here we describe the structure of BamA, the central and essential component of the BAM complex, from two species of bacteria: Neisseria gonorrhoeae and Haemophilus ducreyi. BamA consists of a large periplasmic domain attached to a 16-strand transmembrane β-barrel domain. Three structural features shed light on the mechanism by which BamA catalyses β-barrel assembly. First, the interior cavity is accessible in one BamA structure and conformationally closed in the other. Second, an exterior rim of the β-barrel has a distinctly narrowed hydrophobic surface, locally destabilizing the outer membrane. And third, the β-barrel can undergo lateral opening, suggesting a route from the interior cavity in BamA into the outer membrane.

  18. Prenatal alcohol exposure delays the development of the cortical barrel field in neonatal rats.

    PubMed

    Margret, Cecilia P; Li, Cheng X; Chappell, Tyson D; Elberger, Andrea J; Matta, Shannon G; Waters, Robert S

    2006-06-01

    In-utero alcohol exposure produces sensorimotor developmental abnormalities that often persist into adulthood. The rodent cortical barrel field associated with the representation of the body surface was used as our model system to examine the effect of prenatal alcohol exposure (PAE) on early somatosensory cortical development. In this study, pregnant female rats were intragastrically gavaged daily with high doses of alcohol (6 gm/kg body weight) throughout the first 20 days of pregnancy. Blood alcohol levels were measured in the pregnant dams on gestational days 13 (G13) and G20. The ethanol treated group (EtOH) was compared to the normal control chowfed (CF) group, nutritionally matched pairfed (PF) group, and cross-foster (XF) group. Cortical barrel development was examined in pups across all treatment groups from G25, corresponding to postnatal day 2 (P2), to G32 corresponding to P9. The EtOH and control group pups were weighed, anesthetized, and perfused. Brains were removed and weighed with, and without cerebellum and olfactory bulbs, and neocortex was removed and weighed. Cortices were then flattened, sectioned tangentially, and stained with a metabolic marker, cytochrome oxidase (CO) to reveal the barrel field. Progression of barrel development was distinguished into three categories: (a) absent, (b) cloudy barrel-like pattern, and (c) well-formed barrels with intervening septae. The major findings are: (1) PAE delayed barrel field development by one or more days, (2) the barrel field first appeared as a cloudy pattern that gave way on subsequent days to an adult-like pattern with clearly demarcated intervening septal regions, (3) the barrel field developed differentially in a lateral-to-medial gradient in both alcohol and control groups, (4) PAE delayed birth by one or more days in 53% of the pups, (5) regardless of whether pups were born on G23 (normal expected birth date for non-alcohol controls) or as in the case for the alcohol-delayed pups born as

  19. Upgrade of the ATLAS muon spectrometer for operation at the HL-LHC

    NASA Astrophysics Data System (ADS)

    Kortner, Oliver

    2017-02-01

    The High-Luminosity Large Hadron Collider will increase the sensitivity of the ATLAS experiment to rare physics processes. In order to cope with a 10 times higher instantaneous luminosity compared to the LHC, the trigger system of ATLAS needs to be upgraded. The ATLAS experiment plans to increase the maximum rate capability of the 1st trigger level to 1 MHz at 6 μ s latency. This requires new on- and off-chamber electronics for its muon spectrometer. The replacement of the precision chamber read-out electronics will make it possible to include their data in the 1st level trigger decision and thus to increase the selectivity of the 1st level muon trigger. The acceptance of the present RPC trigger system in the barrel region will be increased from 75% to 95% by the installation of additional thin-gap RPC with a substantially increased high-rate capability compared to the current RPCs.

  20. [The composition and characteristics of the spread of the shot products from a gas-barrel weapon].

    PubMed

    Isakov, V D; Babakhanian, R V; Kuznetsov, Iu D; Sigalov, F A

    1998-01-01

    Chemical composition and diffusion of additional factors of a shot from barrel gun supplied with a standard chemical cartridge are studied. Experimental shots from gas pistols of three designs were made. During shots from gas barrel guns the victim is exposed to additional factors characteristic of both fire arms and gas barrel guns, namely, fragments of plastic cartridge container and pads, magnesium particles, and lacquer powder. The characteristics of the short range zone for gas barrel guns correspond to those of short barrel fire arms.

  1. Lens barrel design of the NIRST IR Camera

    NASA Astrophysics Data System (ADS)

    Côté, Patrice; Leclerc, Mélanie; Châteauneuf, François; Marraco, Hugo

    2009-08-01

    The use of uncooled microbolometer detectors for space infrared (IR) imaging application requires high optical throughput, which leads to very fast optical design (~f/1). This directly translates into stringent requirements for components, assembly and alignment. The Institut National d'Optique (INO) in Quebec City, Canada, designed such a system for the NIRST IR Camera. The instrument is part of the Aquarius/SAC-D satellite, a cooperative mission conducted jointly by NASA and the Comisión Nacional de Actividades Espaciales (CONAE) of Argentina. Due to the tight volume and mass allocation, the NIRST camera module is an all refractive design. Since the Camera is made of two lens barrels co-registered to cover the same ground area at different wavelength bands, it also adds coregistration alignment constraints. This paper presents the optomechanical solutions and alignment scheme that enabled the successful design and flight qualification. Trade-off study between thermally induced stress and structural stiffness of the lens RTV bond is discussed. Special attention is given to lens subcell alignment integrity under random vibration encountered during launch. Detailed Finite Element Analysis (FEA) is used to check early design assumptions. Test results of the final vibration campaign are also presented.

  2. Dynamically tuned shroud for gun barrel vibration attenuation

    NASA Astrophysics Data System (ADS)

    Littlefield, Andrew G.; Kathe, Eric L.; Durocher, Robert

    2002-06-01

    Modern tank guns, such as the one on the Abrams, are stabilized to allow fire on the move while traversing uneven terrain. The current barrel is short enough that treating as a rigid beam allows engagement of another tank at ranges of over a kilometer. However, as the length of the tube is extended, to meet required muzzle exit velocities, the terrain induced vibrations lead to increased muzzle pointing errors. A method to reduce these vibrations is to use the forward thermal shroud as part of a mass tuned damper. In this case the system under study is an extended length version of the gun currently fielded. This extended length increases its susceptibility to terrain-induced vibrations. The forward thermal shroud has been shortened and additional mass has been added onto its forward collar. This collar is then supported by springs, which are preloaded so that they stay in contact through the full range of the shroud's movement. Varying the stiffness of these springs allows for tuning of the absorber. Different types of springs and attachments have been tried. The current version uses leaf springs and a wedge collar. This system has been modeled and experiments conducted to validate the model.

  3. Agriculture, Levels 1-4. Agriculture & Commercial Horticulture, Levels 1-4. Commercial Horticulture, Levels 1-3. Environmental Conservation, Levels 2-4. National Vocational Qualifications.

    ERIC Educational Resources Information Center

    Business and Technology Education Council, London (England).

    Britain's National Vocational Qualifications (NVQs) are work qualifications that measure what an employee or potential employee can do as well as how much he or she knows and understands about a particular job. Used as written proof of usable workplace skills that can be put to profitable use by an employer, NVQs range from basic Level 1, for…

  4. Study of surface properties of ATLAS12 strip sensors and their radiation resistance

    NASA Astrophysics Data System (ADS)

    Mikestikova, M.; Allport, P. P.; Baca, M.; Broughton, J.; Chisholm, A.; Nikolopoulos, K.; Pyatt, S.; Thomas, J. P.; Wilson, J. A.; Kierstead, J.; Kuczewski, P.; Lynn, D.; Hommels, L. B. A.; Ullan, M.; Bloch, I.; Gregor, I. M.; Tackmann, K.; Hauser, M.; Jakobs, K.; Kuehn, S.; Mahboubi, K.; Mori, R.; Parzefall, U.; Clark, A.; Ferrere, D.; Sevilla, S. Gonzalez; Ashby, J.; Blue, A.; Bates, R.; Buttar, C.; Doherty, F.; McMullen, T.; McEwan, F.; O'Shea, V.; Kamada, S.; Yamamura, K.; Ikegami, Y.; Nakamura, K.; Takubo, Y.; Unno, Y.; Takashima, R.; Chilingarov, A.; Fox, H.; Affolder, A. A.; Casse, G.; Dervan, P.; Forshaw, D.; Greenall, A.; Wonsak, S.; Wormald, M.; Cindro, V.; Kramberger, G.; Mandić, I.; Mikuž, M.; Gorelov, I.; Hoeferkamp, M.; Palni, P.; Seidel, S.; Taylor, A.; Toms, K.; Wang, R.; Hessey, N. P.; Valencic, N.; Hanagaki, K.; Dolezal, Z.; Kodys, P.; Bohm, J.; Stastny, J.; Bevan, A.; Beck, G.; Milke, C.; Domingo, M.; Fadeyev, V.; Galloway, Z.; Hibbard-Lubow, D.; Liang, Z.; Sadrozinski, H. F.-W.; Seiden, A.; To, K.; French, R.; Hodgson, P.; Marin-Reyes, H.; Parker, K.; Jinnouchi, O.; Hara, K.; Sato, K.; Hagihara, M.; Iwabuchi, S.; Bernabeu, J.; Civera, J. V.; Garcia, C.; Lacasta, C.; Marti i Garcia, S.; Rodriguez, D.; Santoyo, D.; Solaz, C.; Soldevila, U.

    2016-09-01

    A radiation hard n+-in-p micro-strip sensor for the use in the Upgrade of the strip tracker of the ATLAS experiment at the High Luminosity Large Hadron Collider (HL-LHC) has been developed by the "ATLAS ITk Strip Sensor collaboration" and produced by Hamamatsu Photonics. Surface properties of different types of end-cap and barrel miniature sensors of the latest sensor design ATLAS12 have been studied before and after irradiation. The tested barrel sensors vary in "punch-through protection" (PTP) structure, and the end-cap sensors, whose stereo-strips differ in fan geometry, in strip pitch and in edge strip ganging options. Sensors have been irradiated with proton fluences of up to 1×1016 neq/cm2, by reactor neutron fluence of 1×1015 neq/cm2 and by gamma rays from 60Co up to dose of 1 MGy. The main goal of the present study is to characterize the leakage current for micro-discharge breakdown voltage estimation, the inter-strip resistance and capacitance, the bias resistance and the effectiveness of PTP structures as a function of bias voltage and fluence. It has been verified that the ATLAS12 sensors have high breakdown voltage well above the operational voltage which implies that different geometries of sensors do not influence their stability. The inter-strip isolation is a strong function of irradiation fluence, however the sensor performance is acceptable in the expected range for HL-LHC. New gated PTP structure exhibits low PTP onset voltage and sharp cut-off of effective resistance even at the highest tested radiation fluence. The inter-strip capacitance complies with the technical specification required before irradiation and no radiation-induced degradation was observed. A summary of ATLAS12 sensors tests is presented including a comparison of results from different irradiation sites. The measured characteristics are compared with the previous prototype of the sensor design, ATLAS07.

  5. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  6. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  7. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  8. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  9. 15 CFR 241.6 - Classes of barrels for tolerance application.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... FRUITS, VEGETABLES AND OTHER DRY COMMODITIES, AND FOR CRANBERRIES § 241.6 Classes of barrels for... other dry commodities other than cranberries, are hereby divided into two classes as follows: (a)...

  10. Beta 2-adrenergic receptors are colocalized and coregulated with whisker barrels in rat somatosensory cortex

    SciTech Connect

    Vos, P.; Kaufmann, D.; Hand, P.J.; Wolfe, B.B. )

    1990-07-01

    Autoradiography has been used to visualize independently the subtypes of beta-adrenergic receptors in rat somatosensory cortex. Beta 2-adrenergic receptors, but not beta 1-adrenergic receptors colocalize with whisker barrels in this tissue. Thus, each whisker sends a specific multisynaptic pathway to the somatosensory cortex that can be histochemically visualized and only one subtype of beta-adrenergic receptor is specifically associated with this cortical representation. Additionally, neonatal lesion of any or all of the whisker follicles results in loss of the corresponding barrel(s) as shown by histochemical markers. This loss is paralleled by a similar loss in the organization of beta 2-adrenergic receptors in the somatosensory cortex. Other results indicate that these beta 2-adrenergic receptors are not involved in moment-to-moment signal transmission in this pathway and, additionally, are not involved in a gross way in the development of whisker-barrel array.

  11. External barrel temperature of a small bore olympic rifle and shooting precision.

    PubMed

    Gladyszewska, B; Baranowski, P; Mazurek, W; Wozniak, J; Gladyszewski, G

    2013-03-01

    Investigations on changes in a rifle's barrel temperature during shooting in a rhythm typical for practitioners of Olympic shooting sports are presented. Walther KK300 (cal. 5.6 mm), a typical rifle often used in Olympic competitions, R50 RWS ammunition and a high speed thermographic camera were used in the study. Altair version 5 software was used to process thermal images and a stationary wavelet transform was applied to denoise signals for all the studied points. It was found that the temperature of the rifle barrel does not exceed 0.3°C after one shot whereas the total temperature increase does not exceed 5°C after taking 40 shots and does not affect the position of the hitting point on a target. In fact, contrary to popular belief, the so-called "warming shots" are not done for barrel heating but for cleaning of remnants in the barrel.

  12. A radial map of multi-whisker correlation selectivity in the rat barrel cortex

    PubMed Central

    Estebanez, Luc; Bertherat, Julien; Shulz, Daniel E.; Bourdieu, Laurent; Léger, Jean- François

    2016-01-01

    In the barrel cortex, several features of single-whisker stimuli are organized in functional maps. The barrel cortex also encodes spatio-temporal correlation patterns of multi-whisker inputs, but so far the cortical mapping of neurons tuned to such input statistics is unknown. Here we report that layer 2/3 of the rat barrel cortex contains an additional functional map based on neuronal tuning to correlated versus uncorrelated multi-whisker stimuli: neuron responses to uncorrelated multi-whisker stimulation are strongest above barrel centres, whereas neuron responses to correlated and anti-correlated multi-whisker stimulation peak above the barrel–septal borders, forming rings of multi-whisker synchrony-preferring cells. PMID:27869114

  13. Carbon fiber plates production for the CMS tracker outer barrel detector

    SciTech Connect

    Lanfranco, Giobatta; /Fermilab

    2001-03-01

    The production methods together with the achieved flatness and thickness of the composite support structures of the CMS tracker outer barrel (TOB) detector are presented. Possible areas of improvement in the process and in the materials used are also suggested.

  14. Yeast Mitochondria as a Model System to Study the Biogenesis of Bacterial β-Barrel Proteins.

    PubMed

    Ulrich, Thomas; Oberhettinger, Philipp; Autenrieth, Ingo B; Rapaport, Doron

    2015-01-01

    Beta-barrel proteins are found in the outer membrane of Gram-negative bacteria, mitochondria, and chloroplasts. The evolutionary conservation in the biogenesis of these proteins allows mitochondria to assemble bacterial β-barrel proteins in their functional form. In this chapter, we describe exemplarily how the capacity of yeast mitochondria to process the trimeric autotransporter YadA can be used to study the role of bacterial periplasmic chaperones in this process.

  15. Functionally independent columns of rat somatosensory barrel cortex revealed with voltage-sensitive dye imaging.

    PubMed

    Petersen, C C; Sakmann, B

    2001-11-01

    Whisker movement is somatotopically represented in rodent neocortex by electrical activity in clearly defined barrels, which can be visualized in living brain slices. The functional architecture of this part of the cortex can thus be mapped in vitro with respect to its physiological input and compared with its anatomical architecture. The spatial extent of excitation was measured at high temporal resolution by imaging optical signals from voltage-sensitive dye evoked by stimulation of individual barrels in layer 4. The optical signals correlated closely with subthreshold EPSPs recorded simultaneously from excitatory neurons in layer 4 and layer 2/3, respectively. Excitation was initially (<2 msec) limited to the stimulated barrel and subsequently (>3 msec) spread in a columnar manner into layer 2/3 and then subsided in both layers after approximately 50 msec. The lateral extent of the response was limited to the cortical column defined structurally by the barrel in layer 4. Two experimental interventions increased the spread of excitation. First, blocking GABA(A) receptor-mediated synaptic inhibition caused excitation to spread laterally throughout wide regions of layer 2/3 and layer 5 but not into neighboring barrels, suggesting that the local excitatory connections within layer 4 are restricted to single barrels and that inhibitory neurons control spread in supragranular and infragranular layers. Second, NMDA receptor-dependent increase of the spread of excitation was induced by pairing repetitive stimulation of a barrel column with coincident stimulation of layer 2/3 in a neighboring column. Such plasticity in the spatial extent of excitation in a barrel column could underlie changes in cortical map structure induced by alterations of sensory experience.

  16. Cooling Tests of an Air-Cooled Engine Cylinder with Copper Fins on the Barrel

    DTIC Science & Technology

    1942-07-01

    of the piston thermo- couples aro shown in figures 3 and 4. The locations of the cylinder-surface tiernocc-~ples are shown In figure 5. The crankshaft ...the =esult of improvsd fin design shows that the outside barrel temperature may be a poor crite- rion for barrel cooling. ~or example, at 0.7...dimensions in the L . aluminum-muff design Is reetrieted by limits imposed In maohiriing the fins. With aluminum fins, ae with copper fins, the fin

  17. Public Notification - RTCR Failure To Perform Level 1 Assessment Template

    EPA Pesticide Factsheets

    When a PWS fails to perform a required Level 1 Assessment, it must issue a public notice to inform the consumers of its water of that failure. You can use this template as a guide to prepare that public notice.

  18. The Algorithm Theoretical Basis Document for Level 1A Processing

    NASA Technical Reports Server (NTRS)

    Jester, Peggy L.; Hancock, David W., III

    2012-01-01

    The first process of the Geoscience Laser Altimeter System (GLAS) Science Algorithm Software converts the Level 0 data into the Level 1A Data Products. The Level 1A Data Products are the time ordered instrument data converted from counts to engineering units. This document defines the equations that convert the raw instrument data into engineering units. Required scale factors, bias values, and coefficients are defined in this document. Additionally, required quality assurance and browse products are defined in this document.

  19. Indiana Reading List. [Levels 1, 2, 3, and 4].

    ERIC Educational Resources Information Center

    Indiana State Dept. of Education, Indianapolis.

    This reading list is designed as a companion piece to Indiana's Academic Standards in English/Language Arts and is organized on four levels: Level 1, Grades K-2; Level 2, Grades 3-5; Level 3, Grades 6-8; and Level 4, Grades 9-12. It contains titles and authors for approximately 800 works. The Level 1 Reading List contains these sections: fiction…

  20. The serotonin reuptake inhibitor citalopram suppresses activity in the neonatal rat barrel cortex in vivo.

    PubMed

    Akhmetshina, Dinara; Zakharov, Andrei; Vinokurova, Daria; Nasretdinov, Azat; Valeeva, Guzel; Khazipov, Roustem

    2016-06-01

    Inhibition of serotonin uptake, which causes an increase in extracellular serotonin levels, disrupts the development of thalamocortical barrel maps in neonatal rodents. Previous in vitro studies have suggested that the disruptive effect of excessive serotonin on barrel map formation involves a depression at thalamocortical synapses. However, the effects of serotonin uptake inhibitors on the early thalamocortical activity patterns in the developing barrel cortex in vivo remain largely unknown. Here, using extracellular recordings of the local field potentials and multiple unit activity (MUA) we explored the effects of the selective serotonin reuptake inhibitor (SSRI) citalopram (10-20mg/kg, intraperitoneally) on sensory evoked activity in the barrel cortex of neonatal (postnatal days P2-5) rats in vivo. We show that administration of citalopram suppresses the amplitude and prolongs the delay of the sensory evoked potentials, reduces the power and frequency of the early gamma oscillations, and suppresses sensory evoked and spontaneous neuronal firing. In the adolescent P21-29 animals, citalopram affected neither sensory evoked nor spontaneous activity in barrel cortex. We suggest that suppression of the early thalamocortical activity patterns contributes to the disruption of the barrel map development caused by SSRIs and other conditions elevating extracellular serotonin levels.

  1. Cortical damping: analysis of thalamocortical response transformations in rodent barrel cortex.

    PubMed

    Pinto, David J; Hartings, Jed A; Brumberg, Joshua C; Simons, Daniel J

    2003-01-01

    In the whisker-barrel system, layer IV excitatory neurons respond preferentially to high-velocity deflections of their principal whisker, and these responses are inhibited by deflections of adjacent whiskers. Thalamic input neurons are amplitude and velocity sensitive and have larger excitatory and weaker inhibitory receptive fields than cortical neurons. Computational models based on known features of barrel circuitry capture these and other differences between thalamic and cortical neuron response properties. The models' responses are highly sensitive to thalamic firing synchrony, a finding subsequently confirmed in real barrels by in vivo experiments. Here, we use dynamic systems analysis to examine how barrel circuitry attains its sensitivity to input timing, and how this sensitivity explains the transformation of receptive fields between thalamus and cortex. We find that strong inhibition renders the net effect of intracortical connections suppressive or damping, distinguishing it from previous amplifying models of cortical microcircuits. In damping circuits, recurrent excitation enhances response tuning not by amplifying responses to preferred inputs, but by enabling them to better withstand strong inhibitory influences. Dense interconnections among barrel neurons result in considerable response homogeneity. Neurons outside the barrel layer respond more heterogeneously, possibly reflecting diverse networks and multiple transformations within the cortical output layers.

  2. Evolutions of volatile sulfur compounds of Cabernet Sauvignon wines during aging in different oak barrels.

    PubMed

    Ye, Dong-Qing; Zheng, Xiao-Tian; Xu, Xiao-Qing; Wang, Yun-He; Duan, Chang-Qing; Liu, Yan-Lin

    2016-07-01

    The evolution of volatile sulfur compounds (VSCs) in Cabernet Sauvignon wines from seven regions of China during maturation in oak barrels was investigated. The barrels were made of different wood grains (fine and medium) and toasting levels (light and medium). Twelve VSCs were quantified by GC/FPD, with dimethyl sulfide (DMS) and methionol exceeding their sensory thresholds. Most VSCs tended to decline during the aging, while DMS was found to increase. After one year aging, the levels of DMS, 2-methyltetrahy-drothiophen-3-one and sulfur-containing esters were lower in the wines aged in oak barrels than in stainless steel tanks. The wood grain and toasting level of oak barrels significantly influenced the concentration of S-methyl thioacetate and 2-methyltetrahy-drothiophen-3-one. This study reported the evolution of VSCs in wines during oak barrel aging for the first time and evaluated the influence of barrel types, which would provide wine-makers with references in making proposals about wine aging.

  3. Functional diversity of supragranular GABAergic neurons in the barrel cortex

    PubMed Central

    Gentet, Luc J.

    2012-01-01

    Although the neocortex forms a distributed system comprised of several functional areas, its vertical columnar organization is largely conserved across areas and species, suggesting the existence of a canonical neocortical microcircuit. In order to elucidate the principles governing the organization of such a cortical diagram, a detailed understanding of the dynamics binding different types of cortical neurons into a coherent algorithm is essential. Within this complex circuitry, GABAergic interneurons, while forming approximately only 15–20% of all cortical neurons, appear critical in maintaining a dynamic balance between excitation and inhibition. Despite their importance, cortical GABAergic neurons have not been extensively studied in vivo and their precise role in shaping the local microcircuit sensory response still remains to be determined. Their paucity, combined with their molecular, anatomical, and physiological diversity, has made it difficult to even establish a consensual nomenclature. However, recent technological advances in microscopy and mouse genetics have fostered a renewed interest in neocortical interneurons by putting them within “visible” reach of experimenters. The anatomically well-defined whisker-to-barrel pathway of the rodent is particularly amenable to studies attempting to link cortical circuit dynamics to behavior. To each whisker corresponds a discrete cortical unit equivalent to a single column, specialized in the encoding and processing of the sensory information it receives. In this review, we will focus on the functional role that each subtype of supragranular GABAergic neuron embedded within such a single neocortical unit may play in shaping the dynamics of the local circuit during somatosensory integration. PMID:22912602

  4. Comparison Between Malolactic Fermentation Container and Barrel Toasting Effects on Phenolic, Volatile and Sensory Profile of Red Wines.

    PubMed

    González-Centeno, María Reyes; Chira, Kleopatra; Teissedre, Pierre-Louis

    2017-04-01

    Ellagitannin and anthocyanin profiles, woody volatile composition and sensory properties of wines in which malolactic fermentation (MLF) took place in barrels or stainless steel tanks, have been compared after 12 months of barrel ageing. Three different barrel toastings were evaluated. Barrel-fermented wines generally presented 1.2-fold higher total phenolics, whereas tank-fermented wines exhibited 1.1 and 1.2-fold greater total proanthocyanidin and anthocyanin contents, respectively. Concerning ellagitannin composition, barrel toasting effect seemed to be more important than differences due to MLF-container. Certain woody and fruity volatiles varied significantly (p < 0.05) depending on whether MLF occurred in barrels or tanks. Barrel-fermented wines were preferred in mouth, while olfactory preference depended on barrel toasting. This is the first study that evaluates the impact of oak wood during MLF on ellagitannin composition of wine, as well as the barrel toasting effect on wine attributes during ageing when MLF occurred whether in barrels or tanks.

  5. [Atlas fractures].

    PubMed

    Schären, S; Jeanneret, B

    1999-05-01

    Fractures of the atlas account for 1-2% of all vertebral fractures. We divide atlas fractures into 5 groups: isolated fractures of the anterior arch of the atlas, isolated fractures of the posterior arch, combined fractures of the anterior and posterior arch (so-called Jefferson fractures), isolated fractures of the lateral mass and fractures of the transverse process. Isolated fractures of the anterior or posterior arch are benign and are treated conservatively with a soft collar until the neck pain has disappeared. Jefferson fractures are divided into stable and unstable fracture depending on the integrity of the transverse ligament. Stable Jefferson fractures are treated conservatively with good outcome while unstable Jefferson fractures are probably best treated operatively with a posterior atlanto-axial or occipito-axial stabilization and fusion. The authors preferred treatment modality is the immediate open reduction of the dislocated lateral masses combined with a stabilization in the reduced position using a transarticular screw fixation C1/C2 according to Magerl. This has the advantage of saving the atlanto-occipital joints and offering an immediate stability which makes immobilization in an halo or Minerva cast superfluous. In late instabilities C1/2 with incongruency of the lateral masses occurring after primary conservative treatment, an occipito-cervical fusion is indicated. Isolated fractures of the lateral masses are very rare and may, if the lateral mass is totally destroyed, be a reason for an occipito-cervical fusion. Fractures of the transverse processes may be the cause for a thrombosis of the vertebral artery. No treatment is necessary for the fracture itself.

  6. Thalamic adenylyl cyclase 1 is required for barrel formation in the somatosensory cortex.

    PubMed

    Suzuki, A; Lee, L-J; Hayashi, Y; Muglia, L; Itohara, S; Erzurumlu, R S; Iwasato, T

    2015-04-02

    Cyclic AMP signaling is critical for activity-dependent refinement of neuronal circuits. Global disruption of adenylyl cyclase 1 (AC1), the major calcium/calmodulin-stimulated adenylyl cyclase in the brain, impairs formation of whisker-related discrete neural modules (the barrels) in cortical layer 4 in mice. Since AC1 is expressed both in the thalamus and the neocortex, the question of whether pre- or postsynaptic (or both) AC1 plays a role in barrel formation has emerged. Previously, we generated cortex-specific AC1 knockout (Cx-AC1KO) mice and found that these animals develop histologically normal barrels, suggesting a potentially more prominent role for thalamic AC1 in barrel formation. To determine this, we generated three new lines of mice: one in which AC1 is disrupted in nearly half of the thalamic ventrobasal nucleus cells in addition to the cortical excitatory neurons (Cx/pTh-AC1KO mouse), and another in which AC1 is disrupted in the thalamus but not in the cortex or brainstem nuclei of the somatosensory system (Th-AC1KO mouse). Cx/pTh-AC1KO mice show severe deficits in barrel formation. Th-AC1KO mice show even more severe disruption in barrel patterning. In these two lines, single thalamocortical (TC) axon labeling revealed a larger lateral extent of TC axons in layer 4 compared to controls. In the third line, all calcium-stimulated adenylyl cyclases (both AC1 and AC8) are deleted in cortical excitatory neurons. These mice have normal barrels. Taken together, these results indicate that thalamic AC1 plays a major role in patterning and refinement of the mouse TC circuitry.

  7. Long-term sensory deprivation selectively rearranges functional inhibitory circuits in mouse barrel cortex.

    PubMed

    Li, Peijun; Rudolph, Uwe; Huntsman, Molly M

    2009-07-21

    Long-term whisker removal alters the balance of excitation and inhibition in rodent barrel cortex, yet little is known about the contributions of individual cells and synapses in this process. We studied synaptic inhibition in four major types of neurons in live tangential slices that isolate layer 4 in the posteromedial barrel subfield. Voltage-clamp recordings of layer 4 neurons reveal that fast decay of synaptic inhibition requires alpha1-containing GABA(A) receptors. After 7 weeks of deprivation, we found that GABA(A)-receptor-mediated inhibitory postsynaptic currents (IPSCs) in the inhibitory low-threshold-spiking (LTS) cell recorded in deprived barrels exhibited faster decay kinetics and larger amplitudes in whisker-deprived barrels than those in nondeprived barrels in age-matched controls. This was not observed in other cell types. Additionally, IPSCs recorded in LTS cells from deprived barrels show a marked increase in zolpidem sensitivity. To determine if the faster IPSC decay in LTS cells from deprived barrels indicates an increase in alpha1 subunit functionality, we deprived alpha1(H101R) mutant mice with zolpidem-insensitive alpha1-containing GABA(A) receptors. In these mice and matched wild-type controls, IPSC decay kinetics in LTS cells were faster after whisker removal; however, the deprivation-induced sensitivity to zolpidem was reduced in alpha1(H101R) mice. These data illustrate a change of synaptic inhibition in LTS cells via an increase in alpha1-subunit-mediated function. Because alpha1 subunits are commonly associated with circuit-specific plasticity in sensory cortex, this switch in LTS cell synaptic inhibition may signal necessary circuit changes required for plastic adjustments in sensory-deprived cortex.

  8. Level 1 Processing of MODIS Direct Broadcast Data From Terra

    NASA Technical Reports Server (NTRS)

    Lynnes, Christopher; Smith, Peter; Shotland, Larry; El-Ghazawi, Tarek; Zhu, Ming

    2000-01-01

    In February 2000, an effort was begun to adapt the Moderate Resolution Imaging Spectroradiometer (MODIS) Level 1 production software to process direct broadcast data. Three Level 1 algorithms have been adapted and packaged for release: Level 1A converts raw (level 0) data into Hierarchical Data Format (HDF), unpacking packets into scans; Geolocation computes geographic information for the data points in the Level 1A; and the Level 1B computes geolocated, calibrated radiances from the Level 1A and Geolocation products. One useful aspect of adapting the production software is the ability to incorporate enhancements contributed by the MODIS Science Team. We have therefore tried to limit changes to the software. However, in order to process the data immediately on receipt, we have taken advantage of a branch in the geolocation software that reads orbit and altitude information from the packets themselves, rather than external ancillary files used in standard production. We have also verified that the algorithms can be run with smaller time increments (2.5 minutes) than the five-minute increments used in production. To make the code easier to build and run, we have simplified directories and build scripts. Also, dependencies on a commercial numerics library have been replaced by public domain software. A version of the adapted code has been released for Silicon Graphics machines running lrix. Perhaps owing to its origin in production, the software is rather CPU-intensive. Consequently, a port to Linux is underway, followed by a version to run on PC clusters, with an eventual goal of running in near-real-time (i.e., process a ten-minute pass in ten minutes).

  9. Solution-Focused Group Therapy for Level 1 Substance Abusers

    ERIC Educational Resources Information Center

    Smock, Sara A.; Trepper, Terry S.; Wetchler, Joseph L.; McCollum, Eric E.; Ray, Rose; Pierce, Kent

    2008-01-01

    The present study compared solution-focused group therapy (SFGT) with a traditional problem-focused treatment for level 1 substance abusers. Outcome research on the effectiveness of solution-focused group therapy is minimal, especially in treating substance abusers. In the present study, clients were measured before and after treatment to…

  10. Unusual mode of firearm injury from the recoiled rear end of a gun barrel.

    PubMed

    Agrawal, A; Malla, G; Joshi, S; Kumar, A; Koirala, S

    2008-09-01

    Atypical gunshot wounds are caused by a diverse set of parameters relating to weapons and ammunition. We report a previously-unreported and atypical mode of gunshot wound produced by a detached rear end of the barrel of a gun following accidental gun fire, and discuss the difficulties in the management. A 36-year-old man presented to the emergency department with an alleged history of injury on the forehead with the rear end of a gun barrel following accidental gunfire while cleaning the nozzle. Since the time of injury, the patient was in an altered sensorium and had weakness on the right side of the body. There was minimal but continuous bleeding from the wound, with extrusion of brain matter. Skull radiograph showed that the rear end of the barrel had entered the left frontal bone, with associated depressed fracture of the frontal bone. The patient underwent a bicoronal, bifrontal craniotomy with a T-shaped extension towards the barrel to facilitate the reflection of the scalp flap and to avoid any movement of the barrel as it might further injure the brain. Necrotic brain, dura and bone pieces were removed. The patient was doing well at follow-up except for mild residual motor deficits. This case illustrates that while working with limited facilities, particularly in underdeveloped countries, a careful clinical assessment, interpretation of available images and a judicious operative approach can help to save the patient.

  11. RORβ Induces Barrel-like Neuronal Clusters in the Developing Neocortex

    PubMed Central

    Jabaudon, Denis; J. Shnider, Sara; J. Tischfield, David; J. Galazo, Maria

    2012-01-01

    Neurons in layer IV of the rodent whisker somatosensory cortex are tangentially organized in periodic clusters called barrels, each of which is innervated by thalamocortical axons transmitting sensory information from a single principal whisker, together forming a somatotopic map of the whisker pad. Proper thalamocortical innervation is critical for barrel formation during development, but the molecular mechanisms controlling layer IV neuron clustering are unknown. Here, we investigate the role in this mapping of the nuclear orphan receptor RORβ, which is expressed in neurons in layer IV during corticogenesis. We find that RORβ protein expression specifically increases in the whisker barrel cortex during barrel formation and that in vivo overexpression of RORβ is sufficient to induce periodic barrel-like clustering of cortical neurons. Remarkably, this clustering can be induced as early as E18, prior to innervation by thalamocortical afferents and whisker derived-input. At later developmental stages, these ectopic neuronal clusters are specifically innervated by thalamocortical axons, demonstrated by anterograde labeling from the thalamus and by expression of thalamocortical-specific synaptic markers. Together, these data indicate that RORβ expression levels control cytoarchitectural patterning of neocortical neurons during development, a critical process for the topographical mapping of whisker input onto the cortical surface. PMID:21799210

  12. Angular tuning and velocity sensitivity in different neuron classes within layer 4 of rat barrel cortex.

    PubMed

    Lee, Soo-Hyun; Simons, Daniel J

    2004-01-01

    Local circuitry within layer IV whisker-related barrels is preferentially sensitive to thalamic population firing synchrony, and neurons respond most vigorously to stimuli, such as high-velocity whisker deflections, that evoke it. Field potential recordings suggest that thalamic barreloid neurons having similar angular preferences fire synchronously. To examine whether angular tuning of cortical neurons might also be affected by thalamic firing synchrony, we characterized responses of layer IV units to whisker deflections that varied in angular direction and velocity. Barrel regular-spike units (RSUs) became more tuned for deflection angle with slower whisker movements. Deflection amplitude had no affect. Barrel fast-spike units (FSUs) were poorly tuned for deflection angle, and their responses remained constant with different deflection velocity. The dependence of angular tuning on deflection velocity among barrel RSUs appears to reflect the same underlying response dynamics that determine their velocity sensitivity and receptive field focus. Unexpectedly, septal RSUs and FSUs are largely similar to their barrel counterparts despite available evidence suggesting that they receive different afferent inputs and are embedded within different local circuits.

  13. Adaptation to sensory stimulation in the Rat Barrel Cortex

    NASA Astrophysics Data System (ADS)

    Heiss, Jaime

    Sustained stimulation of sensory organs results in adaptation of the neuronal response along the sensory pathway. Whether or not cortical adaptation affects equally excitatory and inhibitory inputs is poorly understood. This question was examined using patch recordings of neurons in the barrel cortex of anesthetized rats while repetitively stimulating the principal whisker. After characterizing the excitation and inhibition evoked either by single or double whisker deflection or by different stimulation strengths, it was found that inhibition, unlike excitation, sums linearly and adapts more, causing the balance between these inputs to shift towards excitation. A comparison of the latency of thalamic firing and evoked synaptic inputs in the cortex strongly suggests that adaptation of inhibition results mostly from depression of inhibitory synapses rather than reduction in the firing of inhibitory cells. A similar change in the balance was reproduced by a simple feedforward model. The differential adaptation of the synaptic inputs that shifts the balance toward excitation may act as a gain mechanism which enhances the subthreshold response during sustained stimulation, despite a reduction in excitation. Natural sensory stimulation rarely arrives in an isolated manner, but in a context of several stimulations, like when a rat sweeps its whisker along a surface with a given texture. It was shown that individual single cells sporadically fail to respond, in a very variable fashion from trial to trial. Whether or not adaptation is correlated among neighboring neurons or is it a private, independent phenomenon was investigated by performing simultaneous recordings. Neighboring neurons presented a highly correlated responsiveness to repetitive stimulation, which strongly varied from trial to trial in a synchronized way. Population averages of a single trial obtained by LFP recordings and VSD imaging differed considerably from the time average but was highly correlated to

  14. Distributed Wireless Monitoring System for Ullage and Temperature in Wine Barrels

    PubMed Central

    Zhang, Wenqi; Skouroumounis, George K.; Monro, Tanya M.; Taylor, Dennis K.

    2015-01-01

    This paper presents a multipurpose and low cost sensor for the simultaneous monitoring of temperature and ullage of wine in barrels in two of the most important stages of winemaking, that being fermentation and maturation. The distributed sensor subsystem is imbedded within the bung of the barrel and runs on battery for a period of at least 12 months and costs around $27 AUD for all parts. In addition, software was designed which allows for the remote transmission and easy visual interpretation of the data for the winemaker. Early warning signals can be sent when the temperature or ullage deviates from a winemakers expectations so remedial action can be taken, such as when topping is required or the movement of the barrels to a cooler cellar location. Such knowledge of a wine’s properties or storage conditions allows for a more precise control of the final wine quality. PMID:26266410

  15. Network mechanisms of spindle-burst oscillations in the neonatal rat barrel cortex in vivo.

    PubMed

    Minlebaev, Marat; Ben-Ari, Yehezkel; Khazipov, Rustem

    2007-01-01

    Early in development, cortical networks generate particular patterns of activity that participate in cortical development. The dominant pattern of electrical activity in the neonatal rat neocortex in vivo is a spatially confined spindle-burst. Here, we studied network mechanisms of generation of spindle-bursts in the barrel cortex of neonatal rats using a superfused cortex preparation in vivo. Both spontaneous and sensory-evoked spindle-bursts were present in the superfused barrel cortex. Pharmacological analysis revealed that spindle-bursts are driven by glutamatergic synapses with a major contribution of AMPA/kainate receptors, but slight participation of NMDA receptors and gap junctions. Although GABAergic synapses contributed minimally to the pacing the rhythm of spindle-burst oscillations, surround GABAergic inhibition appeared to be crucial for their compartmentalization. We propose that local spindle-burst oscillations, driven by glutamatergic synapses and spatially confined by GABAergic synapses, contribute to the development of barrel cortex during the critical period of developmental plasticity.

  16. Beta-Barrel Scaffold of Fluorescent Proteins: Folding, Stability and Role in Chromophore Formation

    PubMed Central

    Stepanenko, Olesya V.; Stepanenko, Olga V.; Kuznetsova, Irina M.; Verkhusha, Vladislav V.; Turoverov, Konstantin K.

    2013-01-01

    This review focuses on the current view of the interaction between the β-barrel scaffold of fluorescent proteins and their unique chromophore located in the internal helix. The chromophore originates from the polypeptide chain and its properties are influenced by the surrounding protein matrix of the β-barrel. On the other hand, it appears that a chromophore tightens the β-barrel scaffold and plays a crucial role in its stability. Furthermore, the presence of a mature chromophore causes hysteresis of protein unfolding and refolding. We survey studies measuring protein unfolding and refolding using traditional methods as well as new approaches, such as mechanical unfolding and reassembly of truncated fluorescent proteins. We also analyze models of fluorescent protein unfolding and refolding obtained through different approaches, and compare the results of protein folding in vitro to co-translational folding of a newly synthesized polypeptide chain. PMID:23351712

  17. HHrep: de novo protein repeat detection and the origin of TIM barrels

    PubMed Central

    Söding, Johannes; Remmert, Michael; Biegert, Andreas

    2006-01-01

    HHrep is a web server for the de novo identification of repeats in protein sequences, which is based on the pairwise comparison of profile hidden Markov models (HMMs). Its main strength is its sensitivity, allowing it to detect highly divergent repeat units in protein sequences whose repeats could as yet only be detected from their structures. Examples include sequences with β-propellor fold, ferredoxin-like fold, double psi barrels or (βα)8 (TIM) barrels. We illustrate this with proteins from four superfamilies of TIM barrels by revealing a clear 4- and 8-fold symmetry, which we detect solely from their sequences. This symmetry might be the trace of an ancient origin through duplication of a βαβα or βα unit. HHrep can be accessed at . PMID:16844977

  18. HHrep: de novo protein repeat detection and the origin of TIM barrels.

    PubMed

    Söding, Johannes; Remmert, Michael; Biegert, Andreas

    2006-07-01

    HHrep is a web server for the de novo identification of repeats in protein sequences, which is based on the pairwise comparison of profile hidden Markov models (HMMs). Its main strength is its sensitivity, allowing it to detect highly divergent repeat units in protein sequences whose repeats could as yet only be detected from their structures. Examples include sequences with beta-propellor fold, ferredoxin-like fold, double psi barrels or (betaalpha)8 (TIM) barrels. We illustrate this with proteins from four superfamilies of TIM barrels by revealing a clear 4- and 8-fold symmetry, which we detect solely from their sequences. This symmetry might be the trace of an ancient origin through duplication of a betaalphabetaalpha or betaalpha unit. HHrep can be accessed at http://hhrep.tuebingen.mpg.de.

  19. [Automatic polishing of dental prostheses. 1. Development of a centrifugal barrel finishing apparatus].

    PubMed

    Tamaki, Y; Miyazaki, T; Aoyama, N; Suzuki, E; Miyaji, T

    1990-09-01

    A centrifugal barrel finishing apparatus with a variable turn table rotational speed (250-1,000 rpm) was newly developed and barrel finishing of Ni-Cr casting plates (10 x 10 x 2 mm) was performed using alumina base chips. When using the sample with a mirror face the amount of polishing and the surface roughness increased and the surface gloss decreased with the increase in rotation speed. A high rotational speed was useful for coarse polishing and low rotational speed was useful for fine polishing. The continuous barrel polishing was trially performed using the sample prepared by the carborundum wheel under variable rotational speed. Automatic polishing to fine polishing could be done using this apparatus.

  20. Lewin estimates 2 billion barrels of US tar sand recoverable at mid $20/bbl

    SciTech Connect

    Not Available

    1986-12-01

    In 1983, Lewin and Associates prepared a report which established that the US tar sands resource amounts to over 60 billion barrels of bitumen in-place. However, no estimate was made of the technically or economically recoverable portion of this resource. More recent work carried out by Lewin for the US Department of Energy presents an appraisal of technically and economically recoverable tar sands. The paper describes the tar sand resource in-place, tar sand recovery models used in the study, engineering cost models, the economics of the steam soak prospect, and the economics of a surface mining prospect. The results of the Lewin study show that 5.7 billion barrels of domestic tar sand are technically recoverable, using cyclic steam injection and surface extractive mining. Of this, 4.9 billion barrels are technically recoverable from surface mining methods, with 0.8 billion recoverable from steam soak applications. 1 figure, 3 tables.

  1. Persistence of biological traces in gun barrels--an approach to an experimental model.

    PubMed

    Courts, Cornelius; Madea, Burkhard; Schyma, Christian

    2012-05-01

    Traces of backspatter in gun barrels after homicidal or suicidal contact shots may be a valuable source of forensic evidence. Yet, a systematic investigation of the persistence and durability of DNA from biological traces in gun barrels is lacking. Our aim was to generate a realistic model to emulate blood and tissue spatters in gun barrels generated by contact gunshots at biological targets and to analyse the persistence and typability of DNA recovered from such stains. Herein, we devise and evaluate three different models for the emulation of backspatter from contact shots: a gelatine-based model with embedded blood bags, a model based on a spongious matrix soaked with blood and covered with a thin plastic membrane and a head model consisting of an acrylic half sphere filled with ballistic gelatine and with blood bags attached to the sphere under a 3-mm silicone layer. The sampling procedure for all three models: a first shot was fired with several types of guns at each model construction and subsequently a second shot was fired at a backstop. Blood samples were collected after each shot by probing the inner surface of the front and rear end of the respective gun barrel with a sterile swab. DNA was then extracted and quantified and up to 20 different short tandem repeat (STR) systems were amplified to generate DNA profiles. Although DNA quantity and STR typing results were heterogenous between the models, all models succeeded in delivering full STR profiles even after more than one shot. We conclude that biological traces in gun barrels are robust and accessible to forensic analysis and that systematic examination of the inside of gun barrels may be advisable for forensic casework.

  2. Quantitative/Statistical Approach to Bullet-to-Firearm Identification with Consecutively Manufactured Barrels

    SciTech Connect

    Peter Striupaitis; R.E. Gaensslen

    2005-01-30

    Efforts to use objective image comparison and bullet scanning technologies to distinguish bullets from consecutively manufactured handgun barrels from two manufacturers gave mixed results. The ability of a technology to reliably distinguish between matching and non-matching bullets, where the non-matching bullets were as close in pattern to the matching ones as is probably possible, would provide evidence that the distinctions could be made ''objectively'', and independently of human eyes. That evidence is identical or very close to what seems to be needed to satisfy Daubert standards. It is fair to say that the FTI IBIS image comparison technology correctly distinguished between all the Springfield barrel bullets, and between most but not all of the HiPoint barrel bullets. In the HiPoint cases that were not distinguished 100% of the time, they would he distinguished correctly at least 83% of the time. These results, although obviously limited to the materials used in the comparisons, provide strong evidence that barrel-to-bullet matching is objectively reliable. The results with SciClops were less compelling. The results do not mean that bullet-to-barrel matching is not objectively reliable--rather, they mean that this version of the particular technology could not quite distinguish between these extremely similar yet different bullets as well as the image comparison technology did. In a number of cases, the numerical results made the correct distinctions, although they were close to one another. It is hard to say from this data that this technology differs in its ability to make distinctions between the manufacturers, because the results are very similar with both. The human examiner results were as expected. We did not expect any misidentifications, and there were not any. It would have been preferable to have a higher return rate, and thus more comparisons in the overall sample. As noted, the ''consecutively manufactured barrel exercise'' has been done before

  3. MOSFET level 1 and 2 models in APLAC

    NASA Astrophysics Data System (ADS)

    Kankkunen, A.; Andersson, M.; Valtonen, M.

    The Analysis Program for Linear Active Circuits (APLAC) implementations are documented of SPICE level 1 and 2 MOS models. First a set of mappings is derived for handling NMOS and PMOS transistors in all operating regions based on the equations of an NMOS transistor with V(ds) = or greater than 0. Then the model equations of the NMOS transistor are presented. Two drain current models are covered. These are SPICE level 1 and SPICE level 2. The documentation consists of all the equations required for the implementation including the substrate diode model, temperature dependencies, and noise equations. The intrinsic charge models presented are the simplified Yang-Chatterjee models and the Ward-Dutton model. Also the extrinsic capacitance model is documented.

  4. Observations of a solar storm from the stratosphere: The BARREL Mission

    NASA Astrophysics Data System (ADS)

    Halford, Alexa

    2016-07-01

    During the Balloon Array for Radiation belt Relativistic Electron Losses (BARREL) second campaign, BARREL observed with a single primary instrument, a 3"x3" NaI spectrometer measuring 20 keV - 10 MeV X-rays [Woodger et al 2015 JGR], portions of an entire solar storm. This very small event, in terms of geomagnetic activity, or one of the largest of the current solar cycle, in terms of solar energetic particle events, has given us a very clear set of observations of the response of the day side magnetosphere to the arrival of an interplanetary coronal mass ejection shock. The BARREL mission of opportunity working in tandem with the Van Allen Probes was designed to study the loss of radiation belt electrons to the ionosphere and upper atmosphere. However BARREL is able to see X-rays from a multitude of sources. During the second campaign, the Sun produced, and BARREL observed, an X-class flare [McGregor et al in prep.]. This was followed by BARREL observations of X-rays, gamma-rays, and directly injected protons from the solar energetic particle (SEP) event associated with the eruption from the Sun while simultaneously the Van Allen Probes observed the SEP protons in the inner magnetosphere [Halford et al 2016 submitted JGR]. Two days later the shock generated by the interplanetary coronal mass ejection (ICME-shock) hit the Earth while BARREL was in conjunction with the Van Allen Probes and GOES [Halford et al 2015 JGR]. Although this was a Mars directed CME and the Earth only received a glancing blow [Möstl et al 2015 Nat. Commun., Mays et al 2015 ApJ], the modest compression led to the formation of ultra low frequency (ULF) waves, electromagnetic ion cyclotron (EMIC) waves, and very low frequency (VLF) whistler mode waves [Halford and Mann 2016 submitted to JGR]. The combination of these waves and the enhancement of the local particle population led to precipitation of electrons remotely observed by BARREL. This was not a Halloween, Bastille Day, or one of the now

  5. Academic performance and student engagement in level 1 physics undergraduates

    NASA Astrophysics Data System (ADS)

    Casey, M. M.; McVitie, S.

    2009-09-01

    At the beginning of academic year 2007-08, staff in the Department of Physics and Astronomy at the University of Glasgow started to implement a number of substantial changes to the administration of the level 1 physics undergraduate class. The main aims were to improve the academic performance and progression statistics. With this in mind, a comprehensive system of learning support was introduced, the main remit being the provision of an improved personal contact and academic monitoring and support strategy for all students at level 1. The effects of low engagement with compulsory continuous assessment components had already been observed to have a significant effect on students sitting in the middle of the grade curve. Analysis of data from the 2007-08 class showed that even some nominally high-achieving students achieved lowered grades due to the effects of low engagement. Nonetheless, academic and other support measures put in place during 2007-08 played a part in raising the passrate for the level 1 physics class by approximately 8% as well as raising the progression rate by approximately 10%.

  6. Level-1C Product from AIRS: Principal Component Filtering

    NASA Technical Reports Server (NTRS)

    Manning, Evan M.; Jiang, Yibo; Aumann, Hartmut H.; Elliott, Denis A.; Hannon, Scott

    2012-01-01

    The Atmospheric Infrared Sounder (AIRS), launched on the EOS Aqua spacecraft on May 4, 2002, is a grating spectrometer with 2378 channels in the range 3.7 to 15.4 microns. In a grating spectrometer each individual radiance measurement is largely independent of all others. Most measurements are extremely accurate and have very low noise levels. However, some channels exhibit high noise levels or other anomalous behavior, complicating applications needing radiances throughout a band, such as cross-calibration with other instruments and regression retrieval algorithms. The AIRS Level-1C product is similar to Level-1B but with instrument artifacts removed. This paper focuses on the "cleaning" portion of Level-1C, which identifies bad radiance values within spectra and produces substitute radiances using redundant information from other channels. The substitution is done in two passes, first with a simple combination of values from neighboring channels, then with principal components. After results of the substitution are shown, differences between principal component reconstructed values and observed radiances are used to investigate detailed noise characteristics and spatial misalignment in other channels.

  7. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  8. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  9. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  10. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  11. An improved method for constructing and selectively silanizing double-barreled, neutral liquid-carrier, ion-selective microelectrodes

    PubMed Central

    Deveau, Jason S.T.; Grodzinski, Bernard

    2005-01-01

    We describe an improved, efficient and reliable method for the vapour-phase silanization of multi-barreled, ion-selective microelectrodes of which the silanized barrel(s) are to be filled with neutral liquid ion-exchanger (LIX). The technique employs a metal manifold to exclusively and simultaneously deliver dimethyldichlorosilane to only the ion-selective barrels of several multi-barreled microelectrodes. Compared to previously published methods the technique requires fewer procedural steps, less handling of individual microelectrodes, improved reproducibility of silanization of the selected microelectrode barrels and employs standard borosilicate tubing rather than the less-conventional theta-type glass. The electrodes remain stable for up to 3 weeks after the silanization procedure. The efficacy of a double-barreled electrode containing a proton ionophore in the ion-selective barrel is demonstrated in situ in the leaf apoplasm of pea (Pisum) and sunflower (Helianthus). Individual leaves were penetrated to depth of ~150 μm through the abaxial surface. Microelectrode readings remained stable after multiple impalements without the need for a stabilizing PVC matrix. PMID:16136222

  12. Effect of Barrel Material on Critical Current Measurements of High-Jc RRP Nb3Sn Wires

    SciTech Connect

    Ghosh, A.

    2011-08-03

    Nb{sub 3}Sn strands extracted from a 20-strand rectangular Rutherford cable were reacted on either stainless steel or Ti-alloy barrels and the critical current, I{sub c}, in the field range of 8-11.5 T was measured on ITER-type barrels made from Ti-6Al-4V alloy, 304 stainless steel and G-10. Measurements on the 'standard' Ti-alloy barrel using the test procedure employed at BNL are shown to reproduce I{sub c} for extracted strands to {+-}2%. The I{sub c} data for the sample mounted on the 'standard' Ti-alloy are fit to the deviatoric strain scaling model developed for Nb{sub 3}Sn by the University of Twente group using an arbitrary pre-strain. Using the parameters for this fit, the I{sub c} data for the other barrels are fitted by only adjusting the strain. Using this procedure, the strain difference due to the barrel material is determined. Assuming a thermal pre-strain of -0.2% for the sample measured on the Ti-alloy barrel, the use of stainless steel barrel increases the compressive strain by -0.07%, that of G-10 by -0.10%. With the wire soldered to the stainless steel barrel, the strain increases to -0.15%. Details of this study are presented.

  13. Involvement and necessity of the Cpx regulon in the event of aberrant β-barrel outer membrane protein assembly

    PubMed Central

    Gerken, Henri; Leiser, Owen P.; Bennion, Drew; Misra, Rajeev

    2010-01-01

    Summary The Cpx and σE regulons help maintain outer membrane integrity; the Cpx pathway monitors the biogenesis of cell surface structures, such as pili, while the σE pathway monitors the biogenesis of β-barrel outer membrane proteins (OMPs). In this study we revealed the importance of the Cpx regulon in the event of β-barrel OMP mis-assembly, by utilizing mutants expressing either a defective β-barrel OMP assembly machinery (Bam) or assembly defective β-barrel OMPs. Analysis of specific mRNAs showed that ΔcpxR bam double mutants failed to induce degP expression beyond the wild type level, despite activation of the σE pathway. The synthetic conditional lethal phenotype of ΔcpxR in mutant Bam or β-barrel OMP backgrounds was reversed by wild type DegP expressed from a heterologous plasmid promoter. Consistent with the involvement of the Cpx regulon in the event of aberrant β-barrel OMP assembly, the expression of cpxP, the archetypal member of the cpx regulon, was upregulated in defective Bam backgrounds or in cells expressing a single assembly-defective β-barrel OMP species. Together, these results showed that both the Cpx and σE regulons are required to reduce envelope stress caused by aberrant β-barrel OMP assembly, with the Cpx regulon principally contributing by controlling degP expression. PMID:20487295

  14. 27 CFR 25.160 - Tax adjustment for brewers who produce more than 2,000,000 barrels of beer.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... who produce more than 2,000,000 barrels of beer. 25.160 Section 25.160 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS BEER Tax on Beer Determination of Tax § 25.160 Tax adjustment for brewers who produce more than 2,000,000 barrels of beer....

  15. SENTINEL-2 Level 1 Products and Image Processing Performances

    NASA Astrophysics Data System (ADS)

    Baillarin, S. J.; Meygret, A.; Dechoz, C.; Petrucci, B.; Lacherade, S.; Tremas, T.; Isola, C.; Martimort, P.; Spoto, F.

    2012-07-01

    In partnership with the European Commission and in the frame of the Global Monitoring for Environment and Security (GMES) program, the European Space Agency (ESA) is developing the Sentinel-2 optical imaging mission devoted to the operational monitoring of land and coastal areas. The Sentinel-2 mission is based on a satellites constellation deployed in polar sun-synchronous orbit. While ensuring data continuity of former SPOT and LANDSAT multi-spectral missions, Sentinel-2 will also offer wide improvements such as a unique combination of global coverage with a wide field of view (290 km), a high revisit (5 days with two satellites), a high resolution (10 m, 20 m and 60 m) and multi-spectral imagery (13 spectral bands in visible and shortwave infra-red domains). In this context, the Centre National d'Etudes Spatiales (CNES) supports ESA to define the system image products and to prototype the relevant image processing techniques. This paper offers, first, an overview of the Sentinel-2 system and then, introduces the image products delivered by the ground processing: the Level-0 and Level-1A are system products which correspond to respectively raw compressed and uncompressed data (limited to internal calibration purposes), the Level-1B is the first public product: it comprises radiometric corrections (dark signal, pixels response non uniformity, crosstalk, defective pixels, restoration, and binning for 60 m bands); and an enhanced physical geometric model appended to the product but not applied, the Level-1C provides ortho-rectified top of atmosphere reflectance with a sub-pixel multi-spectral and multi-date registration; a cloud and land/water mask is associated to the product. Note that the cloud mask also provides an indication about cirrus. The ground sampling distance of Level-1C product will be 10 m, 20 m or 60 m according to the band. The final Level-1C product is tiled following a pre-defined grid of 100x100 km2, based on UTM/WGS84 reference frame. The

  16. Critical Design Decisions of The Planck LFI Level 1 Software

    NASA Astrophysics Data System (ADS)

    Morisset, N.; Rohlfs, R.; Türler, M.; Meharga, M.; Binko, P.; Beck, M.; Frailis, M.; Zacchei, A.

    2010-12-01

    The PLANCK satellite with two on-board instruments, a Low Frequency Instrument (LFI) and a High Frequency Instrument (HFI) has been launched on May 14th with Ariane 5. The ISDC Data Centre for Astrophysics in Versoix, Switzerland has developed and maintains the Planck LFI Level 1 software for the Data Processing Centre (DPC) in Trieste, Italy. The main tasks of the Level 1 processing are to retrieve the daily available scientific and housekeeping (HK) data of the LFI instrument, the Sorption Cooler and the 4k Cooler data from Mission Operation Centre (MOC) in Darmstadt; to sort them by time and by type (detector, observing mode, etc...); to extract the spacecraft attitude information from auxiliary files; to flag the data according to several criteria; and to archive the resulting Time Ordered Information (TOI), which will then be used to produce maps of the sky in different spectral bands. The output of the Level 1 software are the TOI files in FITS format, later ingested into the Data Management Component (DMC) database. This software has been used during different phases of the LFI instrument development. We started to reuse some ISDC components for the LFI Qualification Model (QM) and we completely rework the software for the Flight Model (FM). This was motivated by critical design decisions taken jointly with the DPC. The main questions were: a) the choice of the data format: FITS or DMC? b) the design of the pipelines: use of the Planck Process Coordinator (ProC) or a simple Perl script? c) do we adapt the existing QM software or do we restart from scratch? The timeline and available manpower are also important issues to be taken into account. We present here the orientation of our choices and discuss their pertinence based on the experience of the final pre-launch tests and the start of real Planck LFI operations.

  17. Volatile compounds and sensorial characterisation of red wine aged in cherry, chestnut, false acacia, ash and oak wood barrels.

    PubMed

    Fernández de Simón, B; Martínez, J; Sanz, M; Cadahía, E; Esteruelas, E; Muñoz, A M

    2014-03-15

    The wood-related volatile profile of wines aged in cherry, acacia, ash, chestnut and oak wood barrels was studied by GC-MS, and could be a useful tool to identify the wood specie used. Thus, 2,4-dihydroxybenzaldehyde in wines aged in acacia barrels, and ethyl-2-benzoate in cherry barrels could be used as chemical markers of these wood species, for authenticity purposes. Also, the quantitative differences obtained in the volatile profiles allow a good classification of all wines regarding wood species of barrels, during all aging time, and they contributed with different intensities to aromatic and gustative characteristics of aged wines. Wines aged in oak were the best valuated during all aging time, but the differences were not always significant. The lowest scores were assigned to wines aged in cherry barrels from 6 months of aging, so this wood could be more suitable in short aging times.

  18. Solution-focused group therapy for level 1 substance abusers.

    PubMed

    Smock, Sara A; Trepper, Terry S; Wetchler, Joseph L; McCollum, Eric E; Ray, Rose; Pierce, Kent

    2008-01-01

    The present study compared solution-focused group therapy (SFGT) with a traditional problem-focused treatment for level 1 substance abusers. Outcome research on the effectiveness of solution-focused group therapy is minimal, especially in treating substance abusers. In the present study, clients were measured before and after treatment to determine therapeutic effectiveness. Clients in the solution-focused group significantly improved on both the Beck Depression Inventory and the Outcome Questionnaire. The clients in the comparison group did not improve significantly on either measure. Therapist skill level and adherence to theoretical models were measured in each group to reduce confounding variables.

  19. Word Frequency Analysis MOS: 96B. Skill Levels 1 & 2.

    DTIC Science & Technology

    1981-05-01

    Level 1 PREPARED BY: OPERATIONS DIV, DPFO Coi - COPIES ATOP Oft ,, 109-1 ,.b S0 .ditims b. ,od ! lil I l liliU DISCLAIMER NOTICE THIS DOCUMENT IS BEST...FORT MOiROE, VIRGINIA 23651 DEC1 lie I .t,., , ..’ t-o" . _ . - ir \\ . " . ! .. * - ,,\\ . . . ’ . . . . . . ,, ,. ,. ~~4W. PREPARE - -.Y, OPERATIONSDIV...FURTHER -IGAPS 14 GARRISON 7 GENFRAL1 GEUC.RAPHIC 9 GIVE 1S GIVEN I GOVERNMENTI GRAVE GREASE I. GP 111 3 GROLP2 GROUPS 2 GliIIDANCE - I GUICE I GUIDES 2 Ho

  20. MODIS. Volume 1: MODIS level 1A software baseline requirements

    NASA Technical Reports Server (NTRS)

    Masuoka, Edward; Fleig, Albert; Ardanuy, Philip; Goff, Thomas; Carpenter, Lloyd; Solomon, Carl; Storey, James

    1994-01-01

    This document describes the level 1A software requirements for the moderate resolution imaging spectroradiometer (MODIS) instrument. This includes internal and external requirements. Internal requirements include functional, operational, and data processing as well as performance, quality, safety, and security engineering requirements. External requirements include those imposed by data archive and distribution systems (DADS); scheduling, control, monitoring, and accounting (SCMA); product management (PM) system; MODIS log; and product generation system (PGS). Implementation constraints and requirements for adapting the software to the physical environment are also included.

  1. Word Frequency Analysis. MOS: 12B. Skill Levels 1 & 2.

    DTIC Science & Technology

    1981-05-01

    Subtitle) ’ S. TYPE &F REPORT & PERIOD COVERED Word Frequency Analysis Final 1Si: /63 , 6. PERFORMING ORG. REPORT NUMBER Skill Level 7. AUTIiOR(,) 0...Word Frequency Analysis (WFA) reports were reproduced exactly as generated via computer printout. The prime users of this document were fully cognizant...AD-A117 203 ARMY TRAINING DEVELOPMENTS INST FORT MONROE VA F/B 5/9 WORD FREQUENCY ANALYSIS . MOSS 128. SKILL LEVELS 1 a 2.4U) MAY 81 A A LON O

  2. Polyphenols in red wine aged in acacia (Robinia pseudoacacia) and oak (Quercus petraea) wood barrels.

    PubMed

    Sanz, Miriam; Fernández de Simón, Brígida; Esteruelas, Enrique; Muñoz, Angel Ma; Cadahía, Estrella; Hernández, Ma Teresa; Estrella, Isabel; Martinez, Juana

    2012-06-30

    Polyphenolic composition of two Syrah wines aged during 6 or 12 months in medium toasting acacia and oak 225L barrels was studied by LC-DAD-ESI/MS. A total of 43 nonanthocyanic phenolic compounds were found in all wines, and other 15 compounds only in the wines from acacia barrels. Thus, the nonanthocyanic phenolic profile could be a useful tool to identify the wines aged in acacia barrels. Among all of them the dihydrorobinetin highlights because of its high levels, but also robinetin, 2,4-dihydroxybenzaldehyde, a tetrahydroxydihydroflavonol, fustin, butin, a trihydroxymethoxydihydroflavonol and 2,4-dihydroxybenzoic acid were detected at appreciable levels in wines during aging in acacia barrels, and could be used as phenolic markers for authenticity purposes. Although longer contact time with acacia wood mean higher concentrations of phenolic markers found in wines, the identification of these wines will also be easy after short aging times due the high levels reached by these compounds, even after only 2 months of aging.

  3. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2013-04-01 2013-04-01 false Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  4. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2012-04-01 2010-04-01 true Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  5. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2010-04-01 2010-04-01 false Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  6. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2011-04-01 2010-04-01 true Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  7. 27 CFR 478.113a - Importation of firearm barrels by nonlicensees.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2014-04-01 2014-04-01 false Importation of firearm barrels by nonlicensees. 478.113a Section 478.113a Alcohol, Tobacco Products, and Firearms BUREAU OF ALCOHOL, TOBACCO, FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE FIREARMS AND AMMUNITION COMMERCE...

  8. Assessment of Residential Rain Barrel Water Quality and Use in Cincinnati, Ohio

    EPA Science Inventory

    The collection, storage, and reuse of rainwater collected in rain barrels from urban rooftop areas assists municipalities in achieving stormwater management objectives and in some areas also serves as an adjunct resource for domestic water supplies. In this study, rainwater reuse...

  9. Determination of Heat Transfer Coefficient in a Gun Barrel from Experimental Data

    DTIC Science & Technology

    1985-01-01

    Barrels, BRL-R- 1740, September 1974. AD #BOOO71L. Mark W. Zemansky , Heat and Thermodynamics, McGraw-Hill Book Company Inc., New York, 1957. 3 Max Jacob...September 1974. AD #BOO17lL. 2. Mark W. Zemansky , Heat and Thermodynamics, McGraw-Hill Book Company Inc., New York, 1957. 3. Max Jacob, Heat Transfer, Vol. 1

  10. 77 FR 37321 - Safety Zone, Barrel Recovery, Lake Superior; Duluth, MN

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-21

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone, Barrel Recovery, Lake Superior; Duluth, MN... in the 1960's in a portion of Lake Superior approximately between Stoney Point and Brighton Beach... munitions waste materials dumped offshore in a portion of Lake Superior approximately 50 years ago....

  11. Metal dust deposition in a shotgun wound associated with barrel modification.

    PubMed

    Williams, Andrew S; Bowes, Matthew J

    2016-03-01

    Contact-range gunshot wounds commonly demonstrate deposition of black soot in and around the wound. Deposition of other visible pigments originating from the firearm has not been specifically described. In the current case, an adult male was found dead adjacent to a shotgun fixed in a vice grip with a modified, shortened barrel. A handheld, powered, metal grinding wheel was nearby. Autopsy revealed an intraoral gunshot wound, including soot deposition in and around the mouth and within the wound track. In addition, there was a peculiar, gray, lustrous film on the lips, gingiva, and anterior teeth. The material was concentrated around the most severe areas of injury in the anterior mouth and easily rubbed off with a cotton swab. It was not visualized in the rest of the mouth and not present in the larynx, or the esophagus. Overall, our opinion is that this unique, gray, lustrous film represents deposition of fine metallic dust that accumulated in the barrel of the shotgun during its modification with the grinding wheel. This type of unique pigment deposition should be recognized by forensic pathologists as possibly being related to the discharge of a firearm with a recently modified barrel or other cause for fine metallic dust accumulation within the barrel. Depending on the circumstances of the case, collection of samples of such metal dust deposits could be indicated for subsequent analysis.

  12. Studies of hadron-electron separators for the ZEUS barrel calorimeter

    SciTech Connect

    Ambats, I.; Bortz, D.; Connolly, A.

    1995-05-25

    Two possible upgrades, a shower maximum detector and a presampler, designed to improve the low energy electron/hadron separation capabilities of the ZEUS barrel calorimeter are described and test-beam results are reported. The presampler can also be used to correct for energy loss of particles traversing the dead material in front of the calorimeter.

  13. Twenty years of barrel-stave flextensional transducer technology in Canada

    NASA Astrophysics Data System (ADS)

    Jones, Dennis F.

    2005-04-01

    The barrel-stave flextensional transducer, a compact underwater sound source, was conceived at DRDC Atlantic in 1986 [G. W. McMahon and D. F. Jones, U.S. Patent No. 4,922,470 (1 May 1990); Canadian Patent No. 1,285,646 (2 July 1991)]. Over the years, five barrel-stave designs belonging to three flextensional classes were built and tested at DRDC Atlantic. Three Class I transducers with operating frequencies ranging from 800 to 1600 Hz were integrated into submarine communications buoys, low frequency active horizontal projector arrays, and a broadband sonar towbody. A high-power Class II and broadband (1-7 kHz) Class III transducer were deployed under the ice in the Lincoln Sea for research related to rapidly deployable surveillance systems. These barrel-stave flextensional transducers have also supported a variety of marine mammal studies including vocal mimicry in long-finned pilot whales, coda dialects in sperm whales, and the R&D of acoustic detection and tracking systems for endangered northern right whales. In August 2004 a barrel-stave transducer was used to lure a trapped juvenile humpback whale to the sluice gates of a tidal generating station on the Annapolis River in Nova Scotia by transmitting humpback whale calls underwater. The acoustic performance parameters for all 5 transducers will be presented.

  14. Analysis of Fibular Single Graft and Fibular Double-barrel Graft for Mandibular Reconstruction

    PubMed Central

    Shimizu, Yusuke; Ihara, Jyun; Kishi, Kazuo

    2016-01-01

    Background: High-quality mandibular reconstruction using vascularized free fibular graft is necessary to provide an osseointegrated dental implant and fixed denture. An appropriate crown–implant ratio is needed, and a good match between bones is extremely important. There are no articles describing the analysis and evaluation of both the fibula and mandible in the same patients. Methods: Computed tomography images of both mandible and fibula of 80 patients were selected in a random manner. We measured bone height of the fibula and mandible at specified points and evaluated the difference of bone height between the fibula and mandible using fibular single or double-barrel grafts. Results: The percentage of patients who had a “good” result for a fibular single graft was only 13.8%. There was no significant difference in bone heights when analyzed by gender. Whether patients were dentulous or not had a large influence on the difference between fibular and mandibular bone heights. Most young patients, but only half of older patients, needed fibular double-barrel grafts. Overweight patients with a high body mass index more often needed fibular double-barrel grafts. Conclusions: For mandibular reconstruction using a fibular graft, preoperative analysis of the patient’s profile and proper use of a fibular single or double-barrel graft contribute to minimizing the difference between the height of the grafted fibula and native mandible and are keys to an ideal reconstruction with good cosmetics and function. PMID:27622091

  15. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 3 2011-01-01 2011-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... and Grading Service 1 Equipment and Utensils § 58.425 Conveyor for moving and draining block or...

  16. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... and Grading Service 1 Equipment and Utensils § 58.425 Conveyor for moving and draining block or...

  17. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 3 2014-01-01 2014-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... and Grading Service 1 Equipment and Utensils § 58.425 Conveyor for moving and draining block or...

  18. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 3 2012-01-01 2012-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... and Grading Service 1 Equipment and Utensils § 58.425 Conveyor for moving and draining block or...

  19. 7 CFR 58.425 - Conveyor for moving and draining block or barrel cheese.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 3 2013-01-01 2013-01-01 false Conveyor for moving and draining block or barrel cheese. 58.425 Section 58.425 Agriculture Regulations of the Department of Agriculture (Continued... and Grading Service 1 Equipment and Utensils § 58.425 Conveyor for moving and draining block or...

  20. Evaluation of mRNA Localization Using Double Barrel Scanning Ion Conductance Microscopy.

    PubMed

    Nashimoto, Yuji; Takahashi, Yasufumi; Zhou, Yuanshu; Ito, Hidenori; Ida, Hiroki; Ino, Kosuke; Matsue, Tomokazu; Shiku, Hitoshi

    2016-07-26

    Information regarding spatial mRNA localization in single cells is necessary for a better understanding of cellular functions in tissues. Here, we report a method for evaluating localization of mRNA in single cells using double-barrel scanning ion conductance microscopy (SICM). Two barrels in a nanopipette were filled with aqueous and organic electrolyte solutions and used for SICM and as an electrochemical syringe, respectively. We confirmed that the organic phase barrel could be used to collect cytosol from living cells, which is a minute but sufficient amount to assess cellular status using qPCR analysis. The water phase barrel could be used for SICM to image topography with subcellular resolution, which could be used to determine positions for analyzing mRNA expression. This system was able to evaluate mRNA localization in single cells. After puncturing the cellular membrane in a minimally invasive manner, using SICM imaging as a guide, we collected a small amount cytosol from different positions within a single cell and showed that mRNA expression depends on cellular position. In this study, we show that SICM imaging can be utilized for the analysis of mRNA localization in single cells. In addition, we fully automated the pipet movement in the XYZ-directions during the puncturing processes, making it applicable as a high-throughput system for collecting cytosol and analyzing mRNA localization.

  1. Npas4 Expression in Two Experimental Models of the Barrel Cortex Plasticity

    PubMed Central

    Kaliszewska, Aleksandra; Kossut, Malgorzata

    2015-01-01

    Npas4 has recently been identified as an important factor in brain plasticity, particularly in mechanisms of inhibitory control. Little is known about Npas4 expression in terms of cortical plasticity. In the present study expressions of Npas4 and the archetypal immediate early gene (IEG) c-Fos were investigated in the barrel cortex of mice after sensory deprivation (sparing one row of whiskers for 7 days) or sensory conditioning (pairing stimulation of one row of whiskers with aversive stimulus). Laser microdissection of individual barrel rows allowed for analysis of IEGs expression precisely in deprived and nondeprived barrels (in deprivation study) or stimulated and nonstimulated barrels (in conditioning study). Cortex activation by sensory conditioning was found to upregulate the expression of both Npas4 and c-Fos. Reorganization of cortical circuits triggered by removal of selected rows of whiskers strongly affected c-Fos but not Npas4 expression. We hypothesize that increased inhibitory synaptogenesis observed previously after conditioning may be mediated by Npas4 expression. PMID:25785202

  2. Fabrication of a glucose biosensor based on inserted barrel plating gold electrodes.

    PubMed

    Hsu, Cheng-Teng; Chung, Hsieh-Hsun; Tsai, Dong-Mung; Fang, Mei-Yen; Hsiao, Hung-Chan; Zen, Jyh-Myng

    2009-01-01

    We demonstrate here the application of barrel plating gold electrodes for fabricating a new type of disposable amperometric glucose biosensor. It is prepared by inserting two barrel plating gold electrodes onto an injection molding plastic base followed by immobilizing with a bioreagent layer and membrane on the electrode surface. The primary function of barrel plating is to provide an economical way to electroplate manufactured parts. The manufacture procedure is simple and can increase the fabrication precision for automation in mass production. At the two-electrode system, the detection of glucose is linear up to 800 mg/dL (i.e., 44.5 mM, r(2) > 0.99) in pH 7.4 PBS with a sensitivity of 0.71 microA/mM. Excellent sensor-to-sensor reproducibility shows coefficients of variation of only 0.8-1.4% for the detection of 56.5-561.0 mg/dL glucose. In laboratory trials 176 capillary blood samples with a range of 30-572 mg/dL glucose are used to evaluate the clinical application of the biosensor. A good linear correlation is observed between the measured values of the proposed biosensor and laboratory reference. Error grid analysis verifies that the proposed technique is promising in fabricating biosensor strips on a mass scale. As successfully demonstrated by using whole blood glucose as a model analyte, the fabrication technique can extend into other barrel plating noble metal electrodes for various applications.

  3. Superior long-term stability of a glucose biosensor based on inserted barrel plating gold electrodes.

    PubMed

    Hsu, Cheng-Teng; Hsiao, Hung-Chan; Fang, Mei-Yen; Zen, Jyh-Myng

    2009-10-15

    Disposable one shot usage blood glucose strips are routinely used in the diagnosis and management of diabetes mellitus and their performance can vary greatly. In this paper we critically evaluated the long-term stability of glucose strips made of barrel plating gold electrodes. Compared to other glucose biosensing platforms of vapor deposited palladium and screen printed carbon electrodes, the proposed glucose biosensor was found to show the best stability among the three biosensing platforms in thermal acceleration experiments at 40 degrees C for 6 months with an average bias of 3.4% at glucose concentrations of 5-20 mM. The precision test of this barrel plating gold glucose biosensor also showed the best performance (coefficients of variation in the range of 1.4-2.4%) in thermal acceleration experiments at 40 degrees C, 50 degrees C and 70 degrees C for 27 days. Error grid analysis revealed that all measurements fell in zone A and zone B. Regression analysis showed no significant difference between the proposed biosensor and the reference method at 99% confidence level. The amperometric glucose biosensor fabricated by inserting two barrel plating gold electrodes onto an injection-molding plastic base followed by immobilizing with a bio-reagent layer and membrane was very impressive with a long-term stability up to 2.5 years at 25 degrees C. Overall, these results indicated that the glucose oxidase/barrel plating gold biosensing platform is ideal for long-term accurate glycemic control.

  4. 33 CFR 135.103 - Levy and payment of barrel fee on OCS oil.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... OCS oil. 135.103 Section 135.103 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE POLLUTION FINANCIAL RESPONSIBILITY AND COMPENSATION OFFSHORE OIL POLLUTION COMPENSATION FUND Levy of Fees § 135.103 Levy and payment of barrel fee on OCS oil. (a) A fee of $.03...

  5. VARIABLES AFFECTING EMISSIONS OF PCDDS/FS FROM UNCONTROLLED COMBUSTION OF HOUSEHOLD WASTE IN BARRELS

    EPA Science Inventory

    The uncontrolled burning of household waste in barrels has recently been implicated as a major source of airborne emissions of polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDDs/Fs). Based on the need to generate a more accurate emission factor for burn ba...

  6. OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method.

    PubMed

    Zhang, Li; Wang, Han; Yan, Lun; Su, Lingtao; Xu, Dong

    2017-03-01

    In the two transmembrane protein types, outer membrane proteins (OMPs) perform diverse important biochemical functions, including substrate transport and passive nutrient uptake and intake. Hence their 3D structures are expected to reveal these functions. Because experimental structures are scarce, predicted 3D structures are more adapted to OMP research instead, and the inter-barrel residue contact is becoming one of the most remarkable features, improving prediction accuracy by describing the structural information of OMPs. To predict OMP structures accurately, we explored an OMP inter-barrel residue contact prediction method: OMPcontact. Multiple OMP-specific features were integrated in the method, including residue evolutionary covariation, topology-based transmembrane segment relative residue position, OMP lipid layer accessibility, and residue evolution conservation. These features describe the properties of a residue pair in different respects: sequential, structural, evolutionary, and biochemical. Within a 3-residues slide window, a Support Vector Machine (SVM) could accurately determinate the inter-barrel contact residue pair using above features. A 5-fold cross-valuation process was applied in testing the OMPcontact performance against a non-redundant OMP set with 75 samples inside. The tests compared four evolutionary covariation methods and screen analyzed the adaptive ones for inter-barrel contact prediction. The results showed our method not only efficiently realized the prediction, but also scored the possibility for residue pairs reliably. This is expected to improve OMP tertiary structure prediction. Therefore, OMPcontact will be helpful in compiling a structural census of outer membrane protein.

  7. High speed machining of space shuttle external tank liquid hydrogen barrel panel

    NASA Technical Reports Server (NTRS)

    Hankins, J. D.

    1983-01-01

    Actual and projected optimum High Speed Machining data for producing shuttle external tank liquid hydrogen barrel panels of aluminum alloy 2219-T87 are reported. The data included various machining parameters; e.g., spindle speeds, cutting speed, table feed, chip load, metal removal rate, horsepower, cutting efficiency, cutter wear (lack of) and chip removal methods.

  8. EVALUATION OF EMISSIONS FROM THE OPEN BURNING OF HOUSEHOLD WASTES IN BARRELS - VOLUME 2. APPENDICES

    EPA Science Inventory

    The report gives results of a detailed emissions characterization study undertaken to examine, characterize, and quantify emissions from the simulated burning of household waste in barrels. The study evaluated two waste streams: that of an avid recycler, who removed most of the r...

  9. EVALUATION OF EMISSIONS FROM THE OPEN BURNING OF HOUSEHOLD WASTE IN BARRELS - VOLUME 1. TECHNICAL REPORT

    EPA Science Inventory

    The report gives results of a detailed emissions characterization study undertaken to examine, characterize, and quantify emissions from the simulated burning of household waste in barrels. The study evaluated two waste streams: that of an avid recycler, who removed most of the r...

  10. Effects of Dimethyl Sulfoxide on Neuronal Response Characteristics in Deep Layers of Rat Barrel Cortex

    PubMed Central

    Soltani, Narjes; Mohammadi, Elham; Allahtavakoli, Mohammad; Shamsizadeh, Ali; Roohbakhsh, Ali; Haghparast, Abbas

    2016-01-01

    Introduction: Dimethyl sulfoxide (DMSO) is a chemical often used as a solvent for water-insoluble drugs. In this study, we evaluated the effect of intracerebroventricular (ICV) administration of DMSO on neural response characteristics (in 1200–1500 μm depth) of the rat barrel cortex. Methods: DMSO solution was prepared in 10% v/v concentration and injected into the lateral ventricle of rats. Neuronal spontaneous activity and neuronal responses to deflection of the principal whisker (PW) and adjacent whisker (AW) were recorded in barrel cortex. A condition test ratio (CTR) was used to measure inhibitory receptive fields in barrel cortex. Results: The results showed that both PW and AW evoked ON and OFF responses, neuronal spontaneous activity and inhibitory receptive fields did not change following ICV administration of DMSO. Conclusion: Results of this study suggest that acute ICV administration of 10% DMSO did not modulate the electrophysiological characteristics of neurons in the l deep ayers of rat barrel cortex. PMID:27563414

  11. System design and performances of ASTER Level-1 data processing

    NASA Astrophysics Data System (ADS)

    Nishida, Sumiyuki; Hachiya, Jun; Matsumoto, Ken; Fujisada, Hiroyuki; Kato, Masatane

    1998-12-01

    ASTER is a multispectral imager which covers wide spectral region from visible to thermal infrared with 14 spectral bands, and will fly on EOS-AM1 in 1999. To meet this wide spectral coverage, ASTER has three optical sensing subsystems (multi-telescope system), VNIR, SWIR and TIR. This multi- telescope configuration requires highly refined ground processing for the generation of Level-1 data products that are radiometrically calibrated and geometrically corrected. A prototype Level-1 processing software system is developed to satisfy these requirements. System design concept adopted includes; (1) 'Automatic Processing,' (2)'ALL-IN-ONE-CONCEPT' in which the processing is carried out using information included in Level-0 data product only, (3) 'MODULE INDEPENDENCE' in which only process control module independently control other modules to change any operational conditions. (4) 'FLEXIBILITY' in which important operation parameters are set from an external component to make the processing condition change easier. The adaptability and the performance of the developed software system are evaluated using simulation data.

  12. The CMS Level-1 Calorimeter Trigger for LHC Run II

    NASA Astrophysics Data System (ADS)

    Sinthuprasith, Tutanon

    2017-01-01

    The phase-1 upgrades of the CMS Level-1 calorimeter trigger have been completed. The Level-1 trigger has been fully commissioned and it will be used by CMS to collect data starting from the 2016 data run. The new trigger has been designed to improve the performance at high luminosity and large number of simultaneous inelastic collisions per crossing (pile-up). For this purpose it uses a novel design, the Time Multiplexed Design, which enables the data from an event to be processed by a single trigger processor at full granularity over several bunch crossings. The TMT design is a modular design based on the uTCA standard. The architecture is flexible and the number of trigger processors can be expanded according to the physics needs of CMS. Intelligent, more complex, and innovative algorithms are now the core of the first decision layer of CMS: the upgraded trigger system implements pattern recognition and MVA (Boosted Decision Tree) regression techniques in the trigger processors for pT assignment, pile up subtraction, and isolation requirements for electrons, and taus. The performance of the TMT design and the latency measurements and the algorithm performance which has been measured using data is also presented here.

  13. The CMS Level-1 trigger system for LHC Run II

    NASA Astrophysics Data System (ADS)

    Cadamuro, L.

    2017-03-01

    The Compact Muon Solenoid (CMS) experiment implements a sophisticated two-level online selection system that achieves a rejection factor of nearly 105. During Run II, the LHC has increased the centre-of-mass energy of proton-proton collisions up to 13 TeV and may progressively reach an instantaneous luminosity of 2×1034 cm‑2 s‑1 or higher. In order to guarantee a successful and ambitious physics programme under this intense environment, the CMS Trigger and Data acquisition system has been upgraded. The upgraded CMS Level-1 (L1) trigger benefits from the recent μTCA technology and is designed to maintain the performance under high instantaneous luminosity conditions. More sophisticated, innovative algorithms are now the core of the first decision layer of CMS: this drastically reduces the trigger rate and improves the trigger efficiency for a wide variety of physics processes. In this document, we present the overall architecture of the upgraded Level-1 trigger system. The performance of single object triggers, measured on collision data recorded during the 2016 running period, are also summarised.

  14. All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences

    PubMed Central

    Hayat, Sikander; Sander, Chris; Marks, Debora S.

    2015-01-01

    Transmembrane β-barrels (TMBs) carry out major functions in substrate transport and protein biogenesis but experimental determination of their 3D structure is challenging. Encouraged by successful de novo 3D structure prediction of globular and α-helical membrane proteins from sequence alignments alone, we developed an approach to predict the 3D structure of TMBs. The approach combines the maximum-entropy evolutionary coupling method for predicting residue contacts (EVfold) with a machine-learning approach (boctopus2) for predicting β-strands in the barrel. In a blinded test for 19 TMB proteins of known structure that have a sufficient number of diverse homologous sequences available, this combined method (EVfold_bb) predicts hydrogen-bonded residue pairs between adjacent β-strands at an accuracy of ∼70%. This accuracy is sufficient for the generation of all-atom 3D models. In the transmembrane barrel region, the average 3D structure accuracy [template-modeling (TM) score] of top-ranked models is 0.54 (ranging from 0.36 to 0.85), with a higher (44%) number of residue pairs in correct strand–strand registration than in earlier methods (18%). Although the nonbarrel regions are predicted less accurately overall, the evolutionary couplings identify some highly constrained loop residues and, for FecA protein, the barrel including the structure of a plug domain can be accurately modeled (TM score = 0.68). Lower prediction accuracy tends to be associated with insufficient sequence information and we therefore expect increasing numbers of β-barrel families to become accessible to accurate 3D structure prediction as the number of available sequences increases. PMID:25858953

  15. All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences.

    PubMed

    Hayat, Sikander; Sander, Chris; Marks, Debora S; Elofsson, Arne

    2015-04-28

    Transmembrane β-barrels (TMBs) carry out major functions in substrate transport and protein biogenesis but experimental determination of their 3D structure is challenging. Encouraged by successful de novo 3D structure prediction of globular and α-helical membrane proteins from sequence alignments alone, we developed an approach to predict the 3D structure of TMBs. The approach combines the maximum-entropy evolutionary coupling method for predicting residue contacts (EVfold) with a machine-learning approach (boctopus2) for predicting β-strands in the barrel. In a blinded test for 19 TMB proteins of known structure that have a sufficient number of diverse homologous sequences available, this combined method (EVfold_bb) predicts hydrogen-bonded residue pairs between adjacent β-strands at an accuracy of ∼70%. This accuracy is sufficient for the generation of all-atom 3D models. In the transmembrane barrel region, the average 3D structure accuracy [template-modeling (TM) score] of top-ranked models is 0.54 (ranging from 0.36 to 0.85), with a higher (44%) number of residue pairs in correct strand-strand registration than in earlier methods (18%). Although the nonbarrel regions are predicted less accurately overall, the evolutionary couplings identify some highly constrained loop residues and, for FecA protein, the barrel including the structure of a plug domain can be accurately modeled (TM score = 0.68). Lower prediction accuracy tends to be associated with insufficient sequence information and we therefore expect increasing numbers of β-barrel families to become accessible to accurate 3D structure prediction as the number of available sequences increases.

  16. A wireline piston core barrel for sampling cohesionless sand and gravel below the water table

    USGS Publications Warehouse

    Zapico, Michael M.; Vales, Samuel; Cherry, John A.

    1987-01-01

    A coring device has been developed to obtain long and minimally disturbed samples of saturated cohesionless sand and gravel. The coring device, which includes a wireline and piston, was developed specifically for use during hollow-stem auger drilling but it also offers possibilities for cable tool and rotary drilling. The core barrel consists of an inner liner made of inexpensive aluminum or plastic tubing, a piston for core recovery, and an exterior steel housing that protects the liner when the core barrel is driven into the aquifer. The core barrel, which is approximately 1.6m (5.6 feet) long, is advanced ahead of the lead auger by hammering at the surface on drill rods that are attached to the core barrel. After the sampler has been driven 1.5m (5 feet), the drill rods are detached and a wireline is used to hoist the core barrel, with the sample contained in the aluminum or plastic liner, to the surface. A vacuum developed by the piston during the coring operation provides good recovery of both the sediment and aquifer fluids contained in the sediment. In the field the sample tubes can be easily split along their length for on-site inspection or they can be capped with the pore water fluids inside and transported to the laboratory. The cores are 5cm (2 inches) in diameter by 1.5m (5 feet) long. Core acquisition to depths of 35m (115 feet), with a recovery greater than 90 percent, has become routine in University of Waterloo aquifer studies. A large diameter (12.7cm [5 inch]) version has also been used successfully. Nearly continuous sample sequences from sand and gravel aquifers have been obtained for studies of sedimentology, hydraulic conductivity, hydrogeochemistry and microbiology.

  17. Level1B Performance Evaluation On CryoSat Products

    NASA Astrophysics Data System (ADS)

    Scagliola, Michele; Fornari, Marco; Tagliani, Nicolas

    2013-12-01

    A performance assessment of the CryoSat products for SAR/SARin modes is here presented. The effective across-track IRF has been compared with the expected one, according to the system requirements, and exploiting the calibration products. Then, starting from the along-track processing for Delay/Doppler Radar altimeters, the theoretical model of the along-track IRF for CryoSat has been derived. Moreover the effects of the azimuth windowing on the along-track resolution and on the clutter suppression have been investigated. In particular, the clutter has been evaluated on the Level1b products for both sea ice and ocean scenario, revealing that the azimuth window allows to improve the signal to clutter ratio also in case of ocean waveforms.

  18. BOREAS AFM-5 Level-1 Upper Air Network Data

    NASA Technical Reports Server (NTRS)

    Barr, Alan; Hrynkiw, Charmaine; Newcomer, Jeffrey A. (Editor); Hall, Forrest G. (Editor); Smith, David E. (Technical Monitor)

    2000-01-01

    The Boreal Ecosystem-Atmosphere Study (BOREAS) Airborne Fluxes and Meteorology (AFM)-5 team collected and processed data from the numerous radiosonde flights during the project. The goals of the AFM-05 team were to provide large-scale definition of the atmosphere by supplementing the existing Atmospheric Environment Service (AES) aerological network, both temporally and spatially. This data set includes basic upper-air parameters collected from the network of upper-air stations during the 1993, 1994, and 1996 field campaigns over the entire study region. The data are contained in tabular ASCII files. The level-1 upper-air network data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files also are available on a CD-ROM (see document number 20010000884).

  19. Word Frequency Analysis MOS: 11H. Skill Levels 1 & 2.

    DTIC Science & Technology

    1981-05-01

    DOCTRINE C0181111 FORT MONROE, VIRGINIA 23851 x r AMA. io 𔃺, >~~* Iq AX ~ ~&v. oS 11H Skill Level 1 PREPARED BY: OPERATIONS DIV, DPFO COPY Of- COPIES ATOP...ANXIETY I AlyI IUID I A’ YrUjRE 5 ANyt , 4 APt ( ’ 2 ARCS 2 P 2 A., r 5 2 APH I APPAAE~iT 9 AlluE AR) 4 APPEA~RANCE 6~j, APPkARS 7 AIPr’JI X 2 APP’LF ’ a...AFLLTCfl 21 ExPiJltNT 7 EXPIFDIEFNTS 11 LL [ XPLkIkfCE 1 E PPI E CE D 2 X P I ; 4. E XPL tI .E1) 1 L1f14FIN I ~XPL A ItI PI I ’L I14 LL\\Tiŗ t ’PLLU f 1

  20. EOS MLS Level 1B Data Processing Software. Version 3

    NASA Technical Reports Server (NTRS)

    Perun, Vincent S.; Jarnot, Robert F.; Wagner, Paul A.; Cofield, Richard E., IV; Nguyen, Honghanh T.; Vuu, Christina

    2011-01-01

    This software is an improvement on Version 2, which was described in EOS MLS Level 1B Data Processing, Version 2.2, NASA Tech Briefs, Vol. 33, No. 5 (May 2009), p. 34. It accepts the EOS MLS Level 0 science/engineering data, and the EOS Aura spacecraft ephemeris/attitude data, and produces calibrated instrument radiances and associated engineering and diagnostic data. This version makes the code more robust, improves calibration, provides more diagnostics outputs, defines the Galactic core more finely, and fixes the equator crossing. The Level 1 processing software manages several different tasks. It qualifies each data quantity using instrument configuration and checksum data, as well as data transmission quality flags. Statistical tests are applied for data quality and reasonableness. The instrument engineering data (e.g., voltages, currents, temperatures, and encoder angles) is calibrated by the software, and the filter channel space reference measurements are interpolated onto the times of each limb measurement with the interpolates being differenced from the measurements. Filter channel calibration target measurements are interpolated onto the times of each limb measurement, and are used to compute radiometric gain. The total signal power is determined and analyzed by each digital autocorrelator spectrometer (DACS) during each data integration. The software converts each DACS data integration from an autocorrelation measurement in the time domain into a spectral measurement in the frequency domain, and estimates separately the spectrally, smoothly varying and spectrally averaged components of the limb port signal arising from antenna emission and scattering effects. Limb radiances are also calibrated.

  1. BNL ATLAS Grid Computing

    ScienceCinema

    Michael Ernst

    2016-07-12

    As the sole Tier-1 computing facility for ATLAS in the United States and the largest ATLAS computing center worldwide Brookhaven provides a large portion of the overall computing resources for U.S. collaborators and serves as the central hub for storing,

  2. Language Industries Atlas.

    ERIC Educational Resources Information Center

    Hearn, P. M., Ed.; Button, D. F., Ed.

    This atlas describes the activities of public and private organizations that create the infrastructure within which languages are able to develop and interact in the European Community (EC). It contains over 1,000 descriptions of activities that play a role in shaping the language industries, from a user or provider perspective. The atlas is…

  3. BNL ATLAS Grid Computing

    SciTech Connect

    Michael Ernst

    2008-10-02

    As the sole Tier-1 computing facility for ATLAS in the United States and the largest ATLAS computing center worldwide Brookhaven provides a large portion of the overall computing resources for U.S. collaborators and serves as the central hub for storing,

  4. Charge collection and field profile studies of heavily irradiated strip sensors for the ATLAS inner tracker upgrade

    NASA Astrophysics Data System (ADS)

    Hara, K.; Allport, P. P.; Baca, M.; Broughton, J.; Chisholm, A.; Nikolopoulos, K.; Pyatt, S.; Thomas, J. P.; Wilson, J. A.; Kierstead, J.; Kuczewski, P.; Lynn, D.; Arratia, M.; Hommels, L. B. A.; Ullan, M.; Bloch, I.; Gregor, I. M.; Tackmann, K.; Trofimov, A.; Yildirim, E.; Hauser, M.; Jakobs, K.; Kuehn, S.; Mahboubi, K.; Mori, R.; Parzefall, U.; Clark, A.; Ferrere, D.; Gonzalez Sevilla, S.; Ashby, J.; Blue, A.; Bates, R.; Buttar, C.; Doherty, F.; McMullen, T.; McEwan, F.; O'Shea, V.; Kamada, S.; Yamamura, K.; Ikegami, Y.; Nakamura, K.; Takubo, Y.; Unno, Y.; Takashima, R.; Chilingarov, A.; Fox, H.; Affolder, A. A.; Casse, G.; Dervan, P.; Forshaw, D.; Greenall, A.; Wonsak, S.; Wormald, M.; Cindro, V.; Kramberger, G.; Mandić, I.; Mikuž, M.; Gorelov, I.; Hoeferkamp, M.; Palni, P.; Seidel, S.; Taylor, A.; Toms, K.; Wang, R.; Hessey, N. P.; Valencic, N.; Hanagaki, K.; Dolezal, Z.; Kodys, P.; Bohm, J.; Mikestikova, M.; Bevan, A.; Beck, G.; Milke, C.; Domingo, M.; Fadeyev, V.; Galloway, Z.; Hibbard-Lubow, D.; Liang, Z.; Sadrozinski, H. F.-W.; Seiden, A.; To, K.; French, R.; Hodgson, P.; Marin-Reyes, H.; Parker, K.; Jinnouchi, O.; Hara, K.; Sato, K.; Sato, K.; Hagihara, M.; Iwabuchi, S.; Bernabeu, J.; Civera, J. V.; Garcia, C.; Lacasta, C.; Marti i. Garcia, S.; Rodriguez, D.; Santoyo, D.; Solaz, C.; Soldevila, U.

    2016-09-01

    The ATLAS group has evaluated the charge collection in silicon microstrip sensors irradiated up to a fluence of 1 ×1016 neq/cm2, exceeding the maximum of 1.6 ×1015 neq/cm2 expected for the strip tracker during the high luminosity LHC (HL-LHC) period including a safety factor of 2. The ATLAS12, n+-on-p type sensor, which is fabricated by Hamamatsu Photonics (HPK) on float zone (FZ) substrates, is the latest barrel sensor prototype. The charge collection from the irradiated 1×1 cm2 barrel test sensors has been evaluated systematically using penetrating β-rays and an Alibava readout system. The data obtained at different measurement sites are compared with each other and with the results obtained from the previous ATLAS07 design. The results are very consistent, in particular, when the deposit charge is normalized by the sensor's active thickness derived from the edge transient current technique (edge-TCT) measurements. The measurements obtained using β-rays are verified to be consistent with the measurements using an electron beam. The edge-TCT is also effective for evaluating the field profiles across the depth. The differences between the irradiated ATLAS07 and ATLAS12 samples have been examined along with the differences among the samples irradiated with different radiation sources: neutrons, protons, and pions. The studies of the bulk properties of the devices show that the devices can yield a sufficiently large signal for the expected fluence range in the HL-LHC, thereby acting as precision tracking sensors.

  5. Consumer demand for green stormwater management technology in an urban setting: The case of Chicago rain barrels

    NASA Astrophysics Data System (ADS)

    Ando, Amy W.; Freitas, Luiz P. C.

    2011-12-01

    Hydrological disruption and water pollution from urbanization can be reduced if households in urban areas adopt decentralized storm water controls. We study a citywide municipal subsidized rain-barrel program in the third biggest city in the United States, Chicago, to explore what factors influence whether households purchase this sort of green storm water management technology in an urban setting. Specifically, we regress census-tract level data on the number of rain barrels adopted in different parts of the city on socioeconomic variables, data on local flood frequency, and features of the housing stock. We find that rain-barrel purchases are not correlated with local levels of flooding, even though city residents were told by program managers that rain barrels could alleviate local flooding. Instead, rain barrels are heavily concentrated in places with high-income attitudinally green populations. We do find more rain barrels were adopted in places close to rain-barrel distribution points and near sites of hydrological information campaigns; thus, policy makers might increase green-technology adoption in areas where they can do the most good by reducing transaction costs and providing education programs to those areas. Finally, our results indicate that owner occupancy is positively correlated with green-technology adoption. Low-rise rental housing may have inefficiently low levels of adoption, such that city managers might want to develop programs to encourage storm water management investments by landlords who do not live in their own properties.

  6. A Glimpse of Atlas

    NASA Technical Reports Server (NTRS)

    2005-01-01

    Saturn's little moon Atlas orbits Saturn between the outer edge of the A ring and the fascinating, twisted F ring. This image just barely resolves the disk of Atlas, and also shows some of the knotted structure for which the F ring is known. Atlas is 32 kilometers (20 miles) across.

    The bright outer edge of the A ring is overexposed here, but farther down the image several bright ring features can be seen.

    The image was taken in visible light with the Cassini spacecraft narrow-angle camera on April 25, 2005, at a distance of approximately 2.4 million kilometers (1.5 million miles) from Atlas and at a Sun-Atlas-spacecraft, or phase, angle of 60 degrees. Resolution in the original image was 14 kilometers (9 miles) per pixel.

  7. National Atlas maps

    USGS Publications Warehouse

    ,

    1991-01-01

    The National Atlas of the United States of America was published by the U.S. Geological Survey in 1970. Its 765 maps and charts are on 335 14- by 19-inch pages. Many of the maps span facing pages. It's worth a quick trip to the library just to leaf through all 335 pages of this book. Rapid scanning of its thematic maps yields rich insights to the geography of issues of continuing national interest. On most maps, the geographic patterns are still valid, though the data are not current. The atlas is out of print, but many of its maps can be purchased separately. Maps that span facing pages in the atlas are printed on one sheet. The maps dated after 1970 are either revisions of original atlas maps, or new maps published in atlas format. The titles of the separate maps are listed here.

  8. Cryogenic Tests of the ATLAS Liquid Argon Calorimeter

    NASA Astrophysics Data System (ADS)

    Bremer, J.; Chalifour, M.; Fabre, C.; Gonidec, A.; Passardi, G.

    2006-04-01

    The ATLAS liquid argon calorimeter consists of the barrel and two end-cap detectors housed in three independent cryostats filled with a total volume of 78 m3 of liquid argon. During cool-down the temperature differences in the composite structure of the detectors must be kept within strict limits to avoid excessive mechanical stresses and relative displacements. During normal operation the formation of gas bubbles, which are detrimental to the functioning of the detector, must be prevented and temperature gradients of less than 0.7 K across the argon bath are mandatory due to the temperature dependence of the energy measurements. Between April 2004 and May 2005 the barrel (120 t) and one end-cap (219 t) underwent qualification tests at the operating temperature of 87.3 K using a dedicated test facility at ground level. These tests provided a validation of the cooling methods to be adopted in the final underground configuration. In total 6.9 GJ and 15.7 GJ were extracted from the calorimeters and a temperature uniformity of the argon bath of less than 0.4 K was achieved.

  9. Cobalamin-Independent Methionine Synthase (MetE): A Face-to-Face Double Barrel that Evolved by Gene Duplication

    SciTech Connect

    Pejcha, Robert; Ludwig, Martha L.

    2010-03-08

    Cobalamin-independent methionine synthase (MetE) catalyzes the transfer of a methyl group from methyltetrahydrofolate to L-homocysteine (Hcy) without using an intermediate methyl carrier. Although MetE displays no detectable sequence homology with cobalamin-dependent methionine synthase (MetH), both enzymes require zinc for activation and binding of Hcy. Crystallographic analyses of MetE from T. maritima reveal an unusual dual-barrel structure in which the active site lies between the tops of the two ({beta}{alpha}){sub 8} barrels. The fold of the N-terminal barrel confirms that it has evolved from the C-terminal polypeptide by gene duplication; comparisons of the barrels provide an intriguing example of homologous domain evolution in which binding sites are obliterated. The C-terminal barrel incorporates the zinc ion that binds and activates Hcy. The zinc-binding site in MetE is distinguished from the (Cys){sub 3}Zn site in the related enzymes, MetH and betaine-homocysteine methyltransferase, by its position in the barrel and by the metal ligands, which are histidine, cysteine, glutamate, and cysteine in the resting form of MetE. Hcy associates at the face of the metal opposite glutamate, which moves away from the zinc in the binary E {center_dot} Hcy complex. The folate substrate is not intimately associated with the N-terminal barrel; instead, elements from both barrels contribute binding determinants in a binary complex in which the folate substrate is incorrectly oriented for methyl transfer. Atypical locations of the Hcy and folate sites in the C-terminal barrel presumably permit direct interaction of the substrates in a ternary complex. Structures of the binary substrate complexes imply that rearrangement of folate, perhaps accompanied by domain rearrangement, must occur before formation of a ternary complex that is competent for methyl transfer.

  10. Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints

    PubMed Central

    Chan, Yvonne H.; Venev, Sergey V.; Zeldovich, Konstantin B.; Matthews, C. Robert

    2017-01-01

    Sequence divergence of orthologous proteins enables adaptation to environmental stresses and promotes evolution of novel functions. Limits on evolution imposed by constraints on sequence and structure were explored using a model TIM barrel protein, indole-3-glycerol phosphate synthase (IGPS). Fitness effects of point mutations in three phylogenetically divergent IGPS proteins during adaptation to temperature stress were probed by auxotrophic complementation of yeast with prokaryotic, thermophilic IGPS. Analysis of beneficial mutations pointed to an unexpected, long-range allosteric pathway towards the active site of the protein. Significant correlations between the fitness landscapes of distant orthologues implicate both sequence and structure as primary forces in defining the TIM barrel fitness landscape and suggest that fitness landscapes can be translocated in sequence space. Exploration of fitness landscapes in the context of a protein fold provides a strategy for elucidating the sequence-structure-fitness relationships in other common motifs. PMID:28262665

  11. Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography

    PubMed Central

    Weiler, Nicholas C; Collman, Forrest; Vogelstein, Joshua T; Burns, Randal; Smith, Stephen J

    2014-01-01

    A major question in neuroscience is how diverse subsets of synaptic connections in neural circuits are affected by experience dependent plasticity to form the basis for behavioral learning and memory. Differences in protein expression patterns at individual synapses could constitute a key to understanding both synaptic diversity and the effects of plasticity at different synapse populations. Our approach to this question leverages the immunohistochemical multiplexing capability of array tomography (ATomo) and the columnar organization of mouse barrel cortex to create a dataset comprising high resolution volumetric images of spared and deprived cortical whisker barrels stained for over a dozen synaptic molecules each. These dataset has been made available through the Open Connectome Project for interactive online viewing, and may also be downloaded for offline analysis using web, Matlab, and other interfaces. PMID:25977797

  12. Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

    PubMed

    Weiler, Nicholas C; Collman, Forrest; Vogelstein, Joshua T; Burns, Randal; Smith, Stephen J

    2014-01-01

    A major question in neuroscience is how diverse subsets of synaptic connections in neural circuits are affected by experience dependent plasticity to form the basis for behavioral learning and memory. Differences in protein expression patterns at individual synapses could constitute a key to understanding both synaptic diversity and the effects of plasticity at different synapse populations. Our approach to this question leverages the immunohistochemical multiplexing capability of array tomography (ATomo) and the columnar organization of mouse barrel cortex to create a dataset comprising high resolution volumetric images of spared and deprived cortical whisker barrels stained for over a dozen synaptic molecules each. These dataset has been made available through the Open Connectome Project for interactive online viewing, and may also be downloaded for offline analysis using web, Matlab, and other interfaces.

  13. Gamma ray scanner systems for nondestructive assay of heterogeneous waste barrels

    SciTech Connect

    Martz, H.E.; Roberson, G.P.; Decman, D.J.; Camp, D.C.; Levai, F.

    1997-08-01

    Traditional gamma measurement errors are related to non-uniform measurement responses associated with unknown radioactive source and matrix material distributions. These errors can be reduced by application of tomographic techniques that measure these distributions. LLNL has developed two tomographic-based waste assay systems. They use external radioactive sources and tomography-protocol to map the attenuation within a waste barrel as a function of mono-energetic gamma-ray energy in waste containers. Passive tomography is used to localize and identify specific radioactive waste contents within the same waste containers. Reconstruction of the passive data via the active images allows internal waste radioactivities in a barrel to be corrected for any overlying heterogeneous materials, thus yielding an absolute assay of the waste radioactivities. Calibration of both systems requires only point source measurements and are independent of matrix materials.

  14. A Barrel IFR Instrumented With Limited Streamer Tubes for BABAR Experiment

    SciTech Connect

    Andreotti, M.; /Ferrara U. /INFN, Ferrara

    2006-11-15

    The new barrel Instrumented Flux Return (IFR) of BABAR detector will be reported here. Limited Streamer Tubes (LSTs) have been chosen to replace the existing RPCs as active elements of the barrel IFR. The layout of the new detector will be discussed: in particular, a cell bigger than the standard one has been used to improve efficiency and reliability. The extruded profile is coated with a resistive layer of graphite having a typical surface resistivity between 0.2 and 0.4 MOhm/square. The tubes are assembled in modules and installed in 12 active layers of each sextant of the IFR detector. R&D studies to choose the final design and Quality Control procedure adopted during the tube production will be briefly discussed. Finally the performances of installed LSTs into 2/3 of IFR after 8 months of operations will be reported.

  15. a Barrel Ifr Instrumented with Limited Streamer Tubes for Babar Experiment

    NASA Astrophysics Data System (ADS)

    Andreotti, Mirco

    2006-04-01

    The new barrel Instrumented Flux Return (IFR) of BABAR detector will be reported here. Limited Streamer Tubes (LSTs) have been chosen to replace the existing RPCs as active elements of the barrel IFR. The layout of the new detector will be discussed: in particular, a cell bigger than the standard one has been used to improve efficiency and reliability. The extruded profile is coated with a resistive layer of graphite having a typical surface resistivity between 0.2 and 0.4 MOhm/square. The tubes are assembled in modules and installed in 12 active layers of each sextant of the IFR detector. R&D studies to choose the final design and Quality Control procedure adopted during the tube production will be briefly discussed. Finally the performances of installed LSTs into 2/3 of IFR after 8 months of operations will be reported.

  16. a Barrel Ifr Instrumented with Limited Streamer Tubes for Babar Experiment

    NASA Astrophysics Data System (ADS)

    Cibinetto, Gianluigi

    The new barrel Instrumented Flux Return (IFR) of BABAR detector will be reported here. Limited Stramer Tubes (LSTs) have been chosen to replace the existing RPCs as active elements of the barrel IFR. The layout of the new detector will be discussed: in particular, a cell bigger than the standard one has been used to improve efficiency and reliability. The extruded profile is coated with a resistive layer of graphite having a typical surface resistivity between 0.2 and 0.4 MOhm/square. The tubes are assembled in modules and installed in 12 active layers of each sextant of the IFR detector. R&D studies which have been done to choose the final design will be discussed, as well as the Quality Control procedure adopted during the tube production to assure high performances of the detector.

  17. The Fabrication and Testing of Glass Matrix Composite Cylinders for Gun Barrel Liner Applications

    DTIC Science & Technology

    1982-02-01

    completely seal the com- posite from the HIP gas environment. Metal HIP Containers - The use of a stainless steel metal envelope is another approach to...catastrophic failure was exhibited. INTRODUCTION AND BACKGROUND Current state-of-the-art gun barrels are fabricated from stellite lined chrome...plated steel tubes. Due to their high percentage of the critical ele- ments cobalt and chromium, they are becoming increasingly expensive to manu

  18. Spatiotemporal evolution of excitation and inhibition in the rat barrel cortex investigated with multielectrode arrays.

    PubMed

    Wirth, Corina; Lüscher, Hans-R

    2004-04-01

    We investigated the spatiotemporal evolution of activity in the rat barrel cortex using multielectrode arrays (MEAs). In acute brain slices, field potentials were recorded simultaneously from 60 electrodes with high spatial and temporal resolution. This new technique allowed us to map functionally discrete barrels and to observe the interplay between the excitatory and inhibitory network. The local field potentials (LFPs) were elicited by focal electrical stimulation in layer 4 (L4). Excitation recorded in a single barrel was first confined to the stimulated barrel and subsequently spread in a columnar manner to layer 2/3 (L2/3). This excitation in L4 and lower L2/3 was followed by inhibition curtailing excitation to a short period lasting only approximately 2 ms. In the uppermost layer, a long-lasting (approximately 10 ms), laterally spreading band of excitation remained active. Blockade of GABAA-receptors resulted in a long-lasting and diffuse activation of L4 and lower L2/3 and abolition of activation of the upper L2/3. Thus inhibition not only shaped the spatial-temporal map of excitation in L4 and lower L2/3 but also resulted indirectly in an excitatory action in the superficial layers. Stimulation in L6 revealed a feedforward inhibition to L4 and subsequently an excitatory L6-L4-L6 loop. The complex interplay between excitation and inhibition opens two spatial windows of excitation in the infra- and supragranular layers. They may prepare the L5 pyramidal neuron for associating top-down input from other cortical regions with bottom-up input from the whisker pad to generate behaviorally relevant output.

  19. Altered somatosensory barrel cortex refinement in the developing brain of Mecp2-null mice.

    PubMed

    Moroto, M; Nishimura, A; Morimoto, M; Isoda, K; Morita, T; Yoshida, M; Morioka, S; Tozawa, T; Hasegawa, T; Chiyonobu, T; Yoshimoto, K; Hosoi, H

    2013-11-06

    Rett syndrome (RTT) is a neurodevelopmental disorder caused by mutations in the methyl-CpG binding protein 2 (MeCP2) gene. In previous studies, monoaminergic dysfunctions have been detected in patients with RTT and in a murine model of RTT, the Mecp2-null mouse. Therefore, the pathogenesis of RTT is thought to involve impairments in the monoaminergic systems. However, there have been limited data showing that the impairment of monoamines leads to early symptoms during development. We used histochemistry to study the somatosensory barrel cortex in the B6.129P2(C)-Mecp2(tm1.1Bird) mouse model of RTT. The barrel cortex is widely used to investigate neuronal development and its regulation by various neurotransmitters including 5-HT. 5-HT levels were measured by high performance liquid chromatography with electrochemical detection (HPLC/EC), and serotonin transporter (SERT) and 5-HT1B receptor mRNAs were measured in the somatosensory cortex, thalamus and striatum on postnatal days (P) 10, P20 and P40. Mecp2-null mice (Mecp2-/y) had significantly smaller barrel fields than age-matched wild-type controls (Mecp2+/y) on P10 and P40, but the topographic map was accurately formed. Levels of 5-HT, and SERT and 5-HT1B receptor mRNA expression in the somatosensory cortex did not differ significantly between the Mecp2-null and wild-type mice on P10. However, thalamic 5-HT was reduced in Mecp2-null mice. Our data indicate that a lack of MeCP2 may disturb the refinement of the barrel cortex in the early postnatal period. Our findings suggest that a decrease in thalamic 5-HT might be involved in this phenomenon.

  20. Cofilin1 Controls Transcolumnar Plasticity in Dendritic Spines in Adult Barrel Cortex

    PubMed Central

    Tsubota, Tadashi; Okubo-Suzuki, Reiko; Ohashi, Yohei; Tamura, Keita; Ogata, Koshin; Yaguchi, Masae; Matsuyama, Makoto; Inokuchi, Kaoru; Miyashita, Yasushi

    2015-01-01

    During sensory deprivation, the barrel cortex undergoes expansion of a functional column representing spared inputs (spared column), into the neighboring deprived columns (representing deprived inputs) which are in turn shrunk. As a result, the neurons in a deprived column simultaneously increase and decrease their responses to spared and deprived inputs, respectively. Previous studies revealed that dendritic spines are remodeled during this barrel map plasticity. Because cofilin1, a predominant regulator of actin filament turnover, governs both the expansion and shrinkage of the dendritic spine structure in vitro, it hypothetically regulates both responses in barrel map plasticity. However, this hypothesis remains untested. Using lentiviral vectors, we knocked down cofilin1 locally within layer 2/3 neurons in a deprived column. Cofilin1-knocked-down neurons were optogenetically labeled using channelrhodopsin-2, and electrophysiological recordings were targeted to these knocked-down neurons. We showed that cofilin1 knockdown impaired response increases to spared inputs but preserved response decreases to deprived inputs, indicating that cofilin1 dependency is dissociated in these two types of barrel map plasticity. To explore the structural basis of this dissociation, we then analyzed spine densities on deprived column dendritic branches, which were supposed to receive dense horizontal transcolumnar projections from the spared column. We found that spine number increased in a cofilin1-dependent manner selectively in the distal part of the supragranular layer, where most of the transcolumnar projections existed. Our findings suggest that cofilin1-mediated actin dynamics regulate functional map plasticity in an input-specific manner through the dendritic spine remodeling that occurs in the horizontal transcolumnar circuits. These new mechanistic insights into transcolumnar plasticity in adult rats may have a general significance for understanding reorganization of

  1. Nitrobindin: An Ubiquitous Family of All β-Barrel Heme-proteins.

    PubMed

    De Simone, Giovanna; Ascenzi, Paolo; Polticelli, Fabio

    2016-06-01

    Rhodnius prolixus nitrophorins (Rp-NPs), Arabidopsis thaliana nitrobindin (At-Nb), and Homo sapiens THAP4 (Hs-THAP4) are the unique known proteins that use a β-barrel fold to bind ferric heme, which is devoted to NO transport and/or catalysis. The eight-stranded antiparallel β-barrel Rp-NPs, which represent the only heme-binding lipocalins, are devoted to deliver NO into the blood vessel of the host and to scavenge histamine during blood sucking. Regarding Nbs, crystallographic data suggest the ability of At-Nb and Hs-THAP4 to bind ferric heme; however, no data are available with respect to these functions in the natural host. Here, a bioinformatics investigation based on the amino acid sequences and three-dimensional structures of At-Nb and Hs-THAP4 suggests a conservation of the 10-stranded antiparallel β-barrel Nb structural module in all life kingdoms of the evolutionary ladder. In particular, amino acid residues involved in the heme recognition and in the structure stabilization of the Nb structural module are highly conserved (identity > 29%; homology > 83%). Moreover, molecular models of putative Nbs from different organisms match very well with each other and known three-dimensional structures of Nbs. Furthermore, phylogenetic tree reconstruction indicates that NPs and Nbs group in distinct clades. These data indicate that 10-stranded β-barrel Nbs constitute a new ubiquitous heme protein family spanning from bacteria to Homo sapiens. © 2016 IUBMB Life, 68(6):423-428, 2016.

  2. Particle contamination from Martin Optical Black. [in design of barrel baffle of Infrared Astronomical Satellite

    NASA Technical Reports Server (NTRS)

    Young, P. J.; Noll, R.; Andreozzi, L.; Hope, J.

    1981-01-01

    The design of the barrel baffle of the Infrared Astronomical Satellite (IRAS) Optical Subsystem to minimize production of particulate contamination is described. The configuration of the 50-inch long, 28.5-inch diameter baffle required pop-rivet assembly after coating with Martin Optical Black for stray light suppression. An experiment to determine the contamination produced at assembly led to the modification of the baffle construction to preclude such damage to the coated surfaces.

  3. Boron Nanotubes/Nanofibers in Propellant Material Formulations: Testing and Characterization for Gun Barrel Protection

    DTIC Science & Technology

    2011-01-13

    GFS Chemicals) powder as the primary catalyst, and mesostructured hexagonal framework MCM- 41(Sigma Aldrich) zeolite powder as the template for guiding...the MCM-41 zeolite is evident in the left image. The image on the right shows that nearly all the MCM-41 is removed from the sample. 3...during propellant firing to protect gun barrel surfaces. Also since the nitrogen doped nanostructures remain highly electrically and thermally

  4. Reversibility and two state behaviour in the thermal unfolding of oligomeric TIM barrel proteins.

    PubMed

    Romero-Romero, Sergio; Costas, Miguel; Rodríguez-Romero, Adela; Alejandro Fernández-Velasco, D

    2015-08-28

    Temperature is one of the main variables that modulate protein function and stability. Thermodynamic studies of oligomeric proteins, the dominant protein natural form, have been often hampered because irreversible aggregation and/or slow reactions are common. There are no reports on the reversible equilibrium thermal unfolding of proteins composed of (β/α)8 barrel subunits, albeit this "TIM barrel" topology is one of the most abundant and versatile in nature. We studied the eponymous TIM barrel, triosephosphate isomerase (TIM), belonging to five species of different bacterial taxa. All of them were found to be catalytically efficient dimers. The three-dimensional structure of four enzymes was solved at high/medium resolution. Irreversibility and kinetic control were observed in the thermal unfolding of two TIMs, while for the other three the thermal unfolding was found to follow a two-state equilibrium reversible process. Shifts in the global stability curves of these three proteins are related to the organismal temperature range of optimal growth and modulated by variations in maximum stability temperature and in the enthalpy change at that temperature. Reversibility appears to correlate with the low isoelectric point, the absence of a residual structure in the unfolded state, small cavity volume in the native state, low conformational stability and a low melting temperature. Furthermore, the strong coupling between dimer dissociation and monomer unfolding may reduce aggregation and favour reversibility. It is therefore very thought-provoking to find that a common topological ensemble, such as the TIM barrel, can unfold/refold in the Anfinsen way, i.e. without the help of the cellular machinery.

  5. Validation of the ASTER instrument level 1A scene geometry

    USGS Publications Warehouse

    Kieffer, H.H.; Mullins, K.F.; MacKinnon, D.J.

    2008-01-01

    An independent assessment of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instrument geometry was undertaken by the U.S. ASTER Team, to confirm the geometric correction parameters developed and applied to Level 1A (radiometrically and geometrically raw with correction parameters appended) ASTER data. The goal was to evaluate the geometric quality of the ASTER system and the stability of the Terra spacecraft. ASTER is a 15-band system containing optical instruments with resolutions from 15- to 90-meters; all geometrically registered products are ultimately tied to the 15-meter Visible and Near Infrared (VNIR) sub-system. Our evaluation process first involved establishing a large database of Ground Control Points (GCP) in the mid-western United States; an area with features of an appropriate size for spacecraft instrument resolutions. We used standard U.S. Geological Survey (USGS) Digital Orthophoto Quads (DOQS) of areas in the mid-west to locate accurate GCPs by systematically identifying road intersections and recording their coordinates. Elevations for these points were derived from USGS Digital Elevation Models (DEMS). Road intersections in a swath of nine contiguous ASTER scenes were then matched to the GCPs, including terrain correction. We found no significant distortion in the images; after a simple image offset to absolute position, the RMS residual of about 200 points per scene was less than one-half a VNIR pixel. Absolute locations were within 80 meters, with a slow drift of about 10 meters over the entire 530-kilometer swath. Using strictly simultaneous observations of scenes 370 kilometers apart, we determined a stereo angle correction of 0.00134 degree with an accuracy of one microradian. The mid-west GCP field and the techniques used here should be widely applicable in assessing other spacecraft instruments having resolutions from 5 to 50-meters. ?? 2008 American Society for Photogrammetry and Remote Sensing.

  6. Level 1 Tornado PRA for the High Flux Beam Reactor

    SciTech Connect

    Bozoki, G.E.; Conrad, C.S.

    1994-05-01

    This report describes a risk analysis primarily directed at providing an estimate for the frequency of tornado induced damage to the core of the High Flux Beam Reactor (HFBR), and thus it constitutes a Level 1 Probabilistic Risk Assessment (PRA) covering tornado induced accident sequences. The basic methodology of the risk analysis was to develop a ``tornado specific`` plant logic model that integrates the internal random hardware failures with failures caused externally by the tornado strike and includes operator errors worsened by the tornado modified environment. The tornado hazard frequency, as well as earlier prepared structural and equipment fragility data, were used as input data to the model. To keep modeling/calculational complexity as simple as reasonable a ``bounding`` type, slightly conservative, approach was applied. By a thorough screening process a single dominant initiating event was selected as a representative initiator, defined as: ``Tornado Induced Loss of Offsite Power.`` The frequency of this initiator was determined to be 6.37E-5/year. The safety response of the HFBR facility resulted in a total Conditional Core Damage Probability of .621. Thus, the point estimate of the HFBR`s Tornado Induced Core Damage Frequency (CDF) was found to be: (CDF){sub Tornado} = 3.96E-5/year. This value represents only 7.8% of the internal CDF and thus is considered to be a small contribution to the overall facility risk expressed in terms of total Core Damage Frequency. In addition to providing the estimate of (CDF){sub Tornado}, the report documents, the relative importance of various tornado induced system, component, and operator failures that contribute most to (CDF){sub Tornado}.

  7. Advanced accident sequence precursor analysis level 1 models

    SciTech Connect

    Sattison, M.B.; Thatcher, T.A.; Knudsen, J.K.; Schroeder, J.A.; Siu, N.O.

    1996-03-01

    INEL has been involved in the development of plant-specific Accident Sequence Precursor (ASP) models for the past two years. These models were developed for use with the SAPHIRE suite of PRA computer codes. They contained event tree/linked fault tree Level 1 risk models for the following initiating events: general transient, loss-of-offsite-power, steam generator tube rupture, small loss-of-coolant-accident, and anticipated transient without scram. Early in 1995 the ASP models were revised based on review comments from the NRC and an independent peer review. These models were released as Revision 1. The Office of Nuclear Regulatory Research has sponsored several projects at the INEL this fiscal year to further enhance the capabilities of the ASP models. Revision 2 models incorporates more detailed plant information into the models concerning plant response to station blackout conditions, information on battery life, and other unique features gleaned from an Office of Nuclear Reactor Regulation quick review of the Individual Plant Examination submittals. These models are currently being delivered to the NRC as they are completed. A related project is a feasibility study and model development of low power/shutdown (LP/SD) and external event extensions to the ASP models. This project will establish criteria for selection of LP/SD and external initiator operational events for analysis within the ASP program. Prototype models for each pertinent initiating event (loss of shutdown cooling, loss of inventory control, fire, flood, seismic, etc.) will be developed. A third project concerns development of enhancements to SAPHIRE. In relation to the ASP program, a new SAPHIRE module, GEM, was developed as a specific user interface for performing ASP evaluations. This module greatly simplifies the analysis process for determining the conditional core damage probability for a given combination of initiating events and equipment failures or degradations.

  8. Destiny of a drop on a fiber: from barrel to clamshell and back

    NASA Astrophysics Data System (ADS)

    Eral, Burak; de Ruiter, J.; de Ruiter, R.; Oh, J. M.; Semprebon, C.; Brinkman, M.; Mugele, F.

    2011-11-01

    Drops on cylindrical fibers are a familiar sight, for instance in the form of dew drops on spider webs. They can exist in two competing morphologies, a cylindrically symmetric barrel state completely engulfing the fiber and an asymmetric clamshell state, in which the drop sits on the side of the fiber. Despite their omnipresence and their practical relevance the physical mechanisms governing the stability of the two morphologies remained elusive. Using electrowetting-functionalized fibers we determined of the stability limits of both morphologies as a function of the two relevant control parameters, the contact angle and the liquid volume. While clamshells are found to prevail for large contact angles and small volumes, and barrels prevail for small angles and large volumes, there is also a wide range of intermediate parameter values, for which both morphologies are mechanically stable. Mapping out the energy landscape of the system by numerical minimization of the free energy we find that the barrel state is easily deformed by non-axisymmetric perturbations. From a general perspective, the demonstration of electrowetting-based reversible switching of liquid morphologies on fibers opens up opportunities for designing functional textiles and porous materials. We thank the Chemical Sciences division of the Netherlands Organization for Scientific Research (NWO-CW) for financial support.

  9. Performance of Prototypes for the Barrel Part of the ANDA Electromagnetic Calorimeter

    NASA Astrophysics Data System (ADS)

    Rosenbaum, Christoph; Diehl, S.; Dormenev, V.; Drexler, P.; Kavatsyuk, M.; Kuske, T.; Nazarenko, S.; Novotny, R.; Rosier, P.; Ryazantsev, A.; Wieczorek, P.; Wilms, A.; Zaunick, H.-G.; P¯ANDA Collaboration

    2016-08-01

    The performance of the most recent prototypes of the ANDA barrel electromagnetic calorimeter (EMC) will be compared. The first large scale prototype PROTO60 was designed to test the performance of the improved tapered lead tungstate crystals (PWO-II). The PROTO60 which consists of 6 × 10 crystals was tested at various accelerator facilities over the complete envisaged energy range fulfilling the requirements of the TDR of the ANDA EMC in terms of energy, position and time resolution. To realize the final barrel geometry and to test the final front end electronics, a second prototype PROTO120 has been constructed. It represents a larger section of a barrel slice, containing the most tapered crystals and the close to final components for the ANDA EMC. The performance of both prototypes will be compared with a focus on the analysis procedure including the signal extraction, noise rejection, calibration and the energy resolution. In addition, the influence of the non-uniformity of the crystal on the energy resolution will be discussed.

  10. Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations.

    PubMed

    Gessmann, Dennis; Mager, Frauke; Naveed, Hammad; Arnold, Thomas; Weirich, Sara; Linke, Dirk; Liang, Jie; Nussberger, Stephan

    2011-10-14

    β-Barrel membrane proteins have regular structures with extensive hydrogen-bond networks between their transmembrane (TM) β-strands, which stabilize their protein fold. Nevertheless, weakly stable TM regions, which are important for the protein function and interaction with other proteins, exist. Here, we report on the apparent stability of human Tom40A, a member of the "mitochondrial porin family" and main constituent of the mitochondrial protein-conducting channel TOM (translocase of the outer membrane). Using a physical interaction model, TmSIP, for β-barrel membrane proteins, we have identified three unfavorable β-strands in the TM domain of the protein. Substitution of key residues inside these strands with hydrophobic amino acids results in a decreased sensitivity of the protein to chemical and/or thermal denaturation. The apparent melting temperature observed when denatured at a rate of 1 °C per minute is shifted from 73 to 84 °C. Moreover, the sensitivity of the protein to denaturant agents is significantly lowered. Further, we find a reduced tendency for the mutated protein to form dimers. We propose that the identified weakly stable β-strands 1, 2 and 9 of human Tom40A play an important role in quaternary protein-protein interactions within the mammalian TOM machinery. Our results show that the use of empirical energy functions to model the apparent stability of β-barrel membrane proteins may be a useful tool in the field of nanopore bioengineering.

  11. Improving the Resistance of a Eukaryotic β-Barrel Protein to Thermal and Chemical Perturbation

    PubMed Central

    Gessmann, Dennis; Mager, Frauke; Naveed, Hammad; Arnold, Thomas; Weirich, Sara; Linke, Dirk; Liang, Jie; Nussberger, Stephan

    2013-01-01

    Beta-barrel membrane proteins have regular structures with extensive hydrogen bonding networks between their transmembrane (TM) β-strands, which stabilize their protein fold. Nevertheless, weakly stable TM regions exist, which are important for the protein function and interaction with other proteins. Here, we report on the apparent stability of human Tom40A, a member of the ‘mitochondrial porin family’ and main constituent of the mitochondrial protein-conducting channel TOM. Using a physical interaction model TmSIP for β-barrel membrane proteins, we have identified three β-strands unfavorable in the TM domain of the protein. Substitution of key residues inside these strands with hydrophobic amino acids results in a decreased sensitivity of the protein to chemical and/or thermal denaturation. The apparent melting temperature observed when denatured at a rate of one degree per minute, is shifted from 73 to 84 °C. Moreover, the sensitivity of the protein to denaturant agents is significantly lowered. Further, we find a reduced tendency for the mutated protein to form dimers. We propose that the identified weakly stable β-strands 1, 2 and 9 of human Tom40A play an important role in quaternary protein-protein interactions within the mammalian TOM machinery. Our results show that the use of empirical energy functions to model the apparent stability of β-barrel membrane proteins may be a useful tool in the field of nanopore bioengineering. PMID:21835183

  12. A Novel Mitosomal β-Barrel Outer Membrane Protein in Entamoeba

    PubMed Central

    Santos, Herbert J.; Imai, Kenichiro; Makiuchi, Takashi; Tomii, Kentaro; Horton, Paul; Nozawa, Akira; Ibrahim, Mohamed; Tozawa, Yuzuru; Nozaki, Tomoyoshi

    2015-01-01

    Entamoeba possesses a highly divergent mitochondrion-related organelle known as the mitosome. Here, we report the discovery of a novel protein in Entamoeba, which we name Mitosomal β-barrel Outer Membrane Protein of 30 kDa (MBOMP30). Initially identified through in silico analysis, we experimentally confirmed that MBOMP30 is indeed a β-barrel protein. Circular dichroism analysis showed MBOMP30 has a predominant β-sheet structure. Localization to Entamoeba histolytica mitosomes was observed through Percoll-gradient fractionation and immunofluorescence assay. Mitosomal membrane integration was demonstrated by carbonate fractionation, proteinase K digestion, and immunoelectron microscopy. Interestingly, the deletion of the putative β-signal, a sequence believed to guide β-barrel outer membrane protein (BOMP) assembly, did not affect membrane integration, but abolished the formation of a ~240 kDa complex. MBOMP30 represents only the seventh subclass of eukaryotic BOMPs discovered to date and lacks detectable homologs outside Entamoeba, suggesting that it may be unique to Entamoeba mitosomes. PMID:25711150

  13. Amyloid β-Protein C-Terminal Fragments: Formation of Cylindrins and β-Barrels.

    PubMed

    Do, Thanh D; LaPointe, Nichole E; Nelson, Rebecca; Krotee, Pascal; Hayden, Eric Y; Ulrich, Brittany; Quan, Sarah; Feinstein, Stuart C; Teplow, David B; Eisenberg, David; Shea, Joan-Emma; Bowers, Michael T

    2016-01-20

    In order to evaluate potential therapeutic targets for treatment of amyloidoses such as Alzheimer's disease (AD), it is essential to determine the structures of toxic amyloid oligomers. However, for the amyloid β-protein peptide (Aβ), thought to be the seminal neuropathogenetic agent in AD, its fast aggregation kinetics and the rapid equilibrium dynamics among oligomers of different size pose significant experimental challenges. Here we use ion-mobility mass spectrometry, in combination with electron microscopy, atomic force microscopy, and computational modeling, to test the hypothesis that Aβ peptides can form oligomeric structures resembling cylindrins and β-barrels. These structures are hypothesized to cause neuronal injury and death through perturbation of plasma membrane integrity. We show that hexamers of C-terminal Aβ fragments, including Aβ(24-34), Aβ(25-35) and Aβ(26-36), have collision cross sections similar to those of cylindrins. We also show that linking two identical fragments head-to-tail using diglycine increases the proportion of cylindrin-sized oligomers. In addition, we find that larger oligomers of these fragments may adopt β-barrel structures and that β-barrels can be formed by folding an out-of-register β-sheet, a common type of structure found in amyloid proteins.

  14. Amyloid β-Protein C-terminal Fragments: Formation of Cylindrins and β-barrels

    PubMed Central

    Do, Thanh D.; LaPointe, Nichole E.; Nelson, Rebecca; Krotee, Pascal; Hayden, Eric Y.; Ulrich, Brittany; Quan, Sarah; Feinstein, Stuart C.; Teplow, David B.; Eisenberg, David; Shea, Joan-Emma; Bowers, Michael T.

    2016-01-01

    In order to evaluate potential therapeutic targets for treatment of amyloidoses such as Alzheimer’s disease (AD), it is essential to determine the structures of toxic amyloid oligomers. However, for the amyloid β-protein peptide (Aβ), thought to be the seminal neuropathogenetic agent in AD, its fast aggregation kinetics and the rapid equilibrium dynamics among oligomers of different size pose significant experimental challenges. Here we use ion-mobility mass spectrometry, in combination with electron microscopy, atomic force microscopy, and computational modeling, to test the hypothesis that Aβ peptides can form oligomeric structures resembling cylindrins and β-barrels. These structures are hypothesized to cause neuronal injury and death through perturbation of plasma membrane integrity. We show that hexamers of C-terminal Aβ fragments, including Aβ(24-34), Aβ(25-35) and Aβ(26-36), have collision cross-sections similar to those of cylindrins. We also show that linking two identical fragments head-to-tail using di-glycine increases the proportion of cylindrin-sized oligomers. In addition, we find that larger oligomers of these fragments may adopt β-barrel structures and that β-barrels can be formed by folding an out-of-register β-sheet, a common type of structure found in amyloid proteins. PMID:26700445

  15. Effects of sensory deprivation on columnar organization of neuronal circuits in the rat barrel cortex.

    PubMed

    Schierloh, Anja; Eder, Matthias; Zieglgänsberger, Walter; Dodt, Hans-Ulrich

    2004-08-01

    We examined whether sensory deprivation during formation of the cortical circuitry influences the pattern of intracortical single-cell connections in rat barrel cortex. Excitatory postsynaptic potentials (EPSPs) from layer 2/3 (L2/3) pyramidal neurons were recorded in vitro using patch-clamp techniques. In order to evoke EPSPs, presynaptic neurons were stimulated by photolytically applied glutamate, thus generating action potentials. Synaptic connections between the stimulated and the recorded neuron were identified by the occurrence of PSPs following photostimulation. Sensory deprivation changed the pattern of projections from L4 and L2/3 neurons to L2/3 pyramidal cells. In slices of non-deprived rats 86% of the total presynaptic neurons were located in the first and only 10% in the second barrel column. Deprivation changed these values to 67% and 26%, respectively. Therefore, the probability of presynaptic cells projecting to L2/3 neurons was shifted from adjacent to more remote barrel columns. These results indicate that deprivation of sensory input influences the pattern of intracortical connections.

  16. Early bilateral sensory deprivation blocks the development of coincident discharge in rat barrel cortex.

    PubMed

    Ghoshal, Ayan; Pouget, Pierre; Popescu, Maria; Ebner, Ford

    2009-02-25

    Several theories have proposed a functional role for synchronous neuronal firing in generating the neural code of a sensory perception. Synchronous neural activity develops during a critical postnatal period of cortical maturation, and severely reducing neural activity in a sensory pathway during this period could interfere with the development of coincident discharge among cortical neurons. Loss of such synchrony could provide a fundamental mechanism for the degradation of acuity shown in behavioral studies. We tested the hypothesis that synchronous discharge of barrel cortex neurons would fail to develop after sensory deprivation produced by bilateral whisker trimming from birth to postnatal day 60. By studying the correlated discharge of cortical neuron pairs, we found evidence for strong correlated firing in control animals, and this synchrony was almost absent among pairs of cortical barrel neurons in deprived animals. The degree of synchrony impairment was different in subregions of rat barrel cortex. The model that best fits the data is that cortical neurons receiving direct inputs from the primary sensory (lemniscal) pathway show the greatest decrement in synchrony following sensory deprivation, while neurons with diverse inputs from other areas of thalamus and cortex are relatively less affected in this dimension of cortical function.

  17. Lateral opening in the intact β-barrel assembly machinery captured by cryo-EM

    PubMed Central

    Iadanza, Matthew G.; Higgins, Anna J.; Schiffrin, Bob; Calabrese, Antonio N.; Brockwell, David J.; Ashcroft, Alison E.; Radford, Sheena E.; Ranson, Neil A.

    2016-01-01

    The β-barrel assembly machinery (BAM) is a ∼203 kDa complex of five proteins (BamA–E), which is essential for viability in E. coli. BAM promotes the folding and insertion of β-barrel proteins into the outer membrane via a poorly understood mechanism. Several current models suggest that BAM functions through a ‘lateral gating' motion of the β-barrel of BamA. Here we present a cryo-EM structure of the BamABCDE complex, at 4.9 Å resolution. The structure is in a laterally open conformation showing that gating is independent of BamB binding. We describe conformational changes throughout the complex and interactions between BamA, B, D and E, and the detergent micelle that suggest communication between BAM and the lipid bilayer. Finally, using an enhanced reconstitution protocol and functional assays, we show that for the outer membrane protein OmpT, efficient folding in vitro requires lateral gating in BAM. PMID:27686148

  18. Orofacial Neuropathic Pain Leads to a Hyporesponsive Barrel Cortex with Enhanced Structural Synaptic Plasticity

    PubMed Central

    Thibault, Karine; Rivière, Sébastien; Lenkei, Zsolt

    2016-01-01

    Chronic pain is a long-lasting debilitating condition that is particularly difficult to treat due to the lack of identified underlying mechanisms. Although several key contributing processes have been described at the level of the spinal cord, very few studies have investigated the supraspinal mechanisms underlying chronic pain. Using a combination of approaches (cortical intrinsic imaging, immunohistochemical and behavioural analysis), our study aimed to decipher the nature of functional and structural changes in a mouse model of orofacial neuropathic pain, focusing on cortical areas involved in various pain components. Our results show that chronic neuropathic orofacial pain is associated with decreased haemodynamic responsiveness to whisker stimulation in the barrel field cortex. This reduced functional activation is likely due to the increased basal neuronal activity (measured indirectly using cFos and phospho-ERK immunoreactivity) observed in several cortical areas, including the contralateral barrel field, motor and cingulate cortices. In the same animals, immunohistochemical analysis of markers for active pre- or postsynaptic elements (Piccolo and phospho-Cofilin, respectively) revealed an increased immunofluorescence in deep cortical layers of the contralateral barrel field, motor and cingulate cortices. These results suggest that long-lasting orofacial neuropathic pain is associated with exacerbated neuronal activity and synaptic plasticity at the cortical level. PMID:27548330

  19. Mapping plasticity in the forepaw digit barrel subfield of rat brains using functional MRI

    PubMed Central

    Weng, Jun-Cheng; Chuang, Kai-Hsiang; Goloshevsky, Artem; Dodd, Stephen J.; Sharer, Kathryn

    2012-01-01

    The topographic organization of the forepaw barrel subfield in layer IV of rat primary somatosensory cortex (S1) is a good model for studying neural function and plasticity. The goal of this study was to test the feasibility of functional MRI (fMRI) to map the forepaw digit representations in the S1 of the rat and its plasticity after digit amputation. Three dimentional echo-planar imaging with 300 micron isotropic resolution at 11.7 T was used to achieve high signal-to-noise ratios and laminar layer resolution. By alternating electrical stimulation of the 2nd (D2) and 4th (D4) digits, functional activation in layer IV of the barrel subfields could be distinguished using a differential analysis. Furthermore, two and a half months after the amputation of the 3rd digit in baby rats, the overlapping area between D2 and D4 representations was increased. This indicates that the forepaw barrel subfield previously associated with the ablated digit is now associated with the representation of nearby digits, which is consistent with studies using electrophysiology and cytochrome oxidase staining. PMID:20804851

  20. CREB Regulates Experience-Dependent Spine Formation and Enlargement in Mouse Barrel Cortex

    PubMed Central

    Pignataro, Annabella; Borreca, Antonella; Ammassari-Teule, Martine; Middei, Silvia

    2015-01-01

    Experience modifies synaptic connectivity through processes that involve dendritic spine rearrangements in neuronal circuits. Although cAMP response element binding protein (CREB) has a key function in spines changes, its role in activity-dependent rearrangements in brain regions of rodents interacting with the surrounding environment has received little attention so far. Here we studied the effects of vibrissae trimming, a widely used model of sensory deprivation-induced cortical plasticity, on processes associated with dendritic spine rearrangements in the barrel cortex of a transgenic mouse model of CREB downregulation (mCREB mice). We found that sensory deprivation through prolonged whisker trimming leads to an increased number of thin spines in the layer V of related barrel cortex (Contra) in wild type but not mCREB mice. In the barrel field controlling spared whiskers (Ipsi), the same trimming protocol results in a CREB-dependent enlargement of dendritic spines. Last, we demonstrated that CREB regulates structural rearrangements of synapses that associate with dynamic changes of dendritic spines. Our findings suggest that CREB plays a key role in dendritic spine dynamics and synaptic circuits rearrangements that account for new brain connectivity in response to changes in the environment. PMID:26075101

  1. Plasticity-Related Gene 1 Affects Mouse Barrel Cortex Function via Strengthening of Glutamatergic Thalamocortical Transmission.

    PubMed

    Unichenko, Petr; Kirischuk, Sergei; Yang, Jenq-Wei; Baumgart, Jan; Roskoden, Thomas; Schneider, Patrick; Sommer, Angela; Horta, Guilherme; Radyushkin, Konstantin; Nitsch, Robert; Vogt, Johannes; Luhmann, Heiko J

    2016-07-01

    Plasticity-related gene-1 (PRG-1) is a brain-specific protein that modulates glutamatergic synaptic transmission. Here we investigated the functional role of PRG-1 in adolescent and adult mouse barrel cortex both in vitro and in vivo. Compared with wild-type (WT) animals, PRG-1-deficient (KO) mice showed specific behavioral deficits in tests assessing sensorimotor integration and whisker-based sensory discrimination as shown in the beam balance/walking test and sandpaper tactile discrimination test, respectively. At P25-31, spontaneous network activity in the barrel cortex in vivo was higher in KO mice compared with WT littermates, but not at P16-19. At P16-19, sensory evoked cortical responses in vivo elicited by single whisker stimulation were comparable in KO and WT mice. In contrast, at P25-31 evoked responses were smaller in amplitude and longer in duration in WT animals, whereas KO mice revealed no such developmental changes. In thalamocortical slices from KO mice, spontaneous activity was increased already at P16-19, and glutamatergic thalamocortical inputs to Layer 4 spiny stellate neurons were potentiated. We conclude that genetic ablation of PRG-1 modulates already at P16-19 spontaneous and evoked excitability of the barrel cortex, including enhancement of thalamocortical glutamatergic inputs to Layer 4, which distorts sensory processing in adulthood.

  2. EMISSIONS OF POLYCHLORINATED DIBENZO-P-DIOXINS AND POLYCHLORINATED DIBENZOFURANS FROM THE OPEN BURNING OF HOUSEHOLD WASTE IN BARRELS

    EPA Science Inventory

    Backyard burning of household waste in barrels is a common waste disposal practice for which pollutant emissions have not been well characterized. This study measured the emissions of several pollutants, including polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofura...

  3. Shifts in Developmental Timing, and Not Increased Levels of Experience-Dependent Neuronal Activity, Promote Barrel Expansion in the Primary Somatosensory Cortex of Rats Enucleated at Birth

    PubMed Central

    Fetter-Pruneda, Ingrid; Ibarrarán-Viniegra, Ana Sofía; Martínez-Martínez, Eduardo; Sandoval-Velasco, Marcela; Uribe-Figueroa, Laura; Padilla-Cortés, Patricia; Mercado-Célis, Gabriela; Gutiérrez-Ospina, Gabriel

    2013-01-01

    Birth-enucleated rodents display enlarged representations of whiskers (i.e., barrels of the posteromedial subfield) in the primary somatosensory cortex. Although the historical view maintains that barrel expansion is due to incremental increases in neuronal activity along the trigeminal pathway during postnatal development, recent evidence obtained in experimental models of intramodal plasticity challenges this view. Here, we re-evaluate the role of experience-dependent neuronal activity on barrel expansion in birth-enucleated rats by combining various anatomical methods and sensory deprivation paradigms. We show that barrels in birth-enucleated rats were already enlarged by the end of the first week of life and had levels of metabolic activity comparable to those in control rats at different ages. Dewhiskering after the postnatal period of barrel formation did not prevent barrel expansion in adult, birth-enucleated rats. Further, dark rearing and enucleation after barrel formation did not lead to expanded barrels in adult brains. Because incremental increases of somatosensory experience did not promote barrel expansion in birth-enucleated rats, we explored whether shifts of the developmental timing could better explain barrel expansion during the first week of life. Accordingly, birth-enucleated rats show earlier formation of barrels, accelerated growth of somatosensory thalamocortical afferents, and an earlier H4 deacetylation. Interestingly, when H4 deacetylation was prevented with a histone deacetylases inhibitor (valproic acid), barrel specification timing returned to normal and barrel expansion did not occur. Thus, we provide evidence supporting that shifts in developmental timing modulated through epigenetic mechanisms, and not increased levels of experience dependent neuronal activity, promote barrel expansion in the primary somatosensory cortex of rats enucleated at birth. PMID:23372796

  4. The Millennium Star Atlas

    NASA Astrophysics Data System (ADS)

    Sinnott, R. W.

    1997-08-01

    Derived from Hipparcos and Tycho observations, the Millennium Star Atlas is a set of 1548 charts covering the entire sky to about magnitude 11. It stands apart from all previous printed atlases in completeness to magnitude 10 and in uniformity around the sky. The generous chart scale has made possible a number of innovations never before seen in a star atlas: arrows on high-proper-motion stars, double-star ticks conveying separation and position angle for a specific modern epoch, distance labels for nearby stars, and variable stars coded by amplitude, period, and type. Among the nonstellar objects plotted, more than 8000 galaxies are shown with aspect ratio and orientation.

  5. An outbreak of norovirus-associated acute gastroenteritis associated with contaminated barrelled water in many schools in Zhejiang, China

    PubMed Central

    Sheng, Minyang; Song, Jianqiang; He, Fan; Qiu, Yinwei; Wu, Haocheng; Lu, Qinbao; Feng, Yan; Lin, Junfen; Chen, Enfu; Chai, Chengliang

    2017-01-01

    Objectives More than 900 students and teachers at many schools in Jiaxing city developed acute gastroenteritis in February 2014. An immediate epidemiological investigation was conducted to identify the pathogen, infection sources and route of transmission. Methods The probable cases and confirmed cases were defined as students or teachers with diarrhoea or vomiting present since the term began in February 2014. An active search was conducted for undiagnosed cases among students and teachers. Details such as demographic characteristics, gastrointestinal symptoms, and drinking water preference and frequency were collected via a uniform epidemiological questionnaire. A case-control study was implemented, and odds ratios (ORs) and 95% confidence intervals were calculated. Rectal swabs from several patients, food handlers and barrelled water factory workers, as well as water and food samples, were collected to test for potential bacteria and viruses. Results A total of 924 cases fit the definition of the probable case, including 8 cases of laboratory-confirmed norovirus infection at 13 schools in Jiaxing city between February 12 and February 21, 2014. The case-control study demonstrated that barrelled water was a risk factor (OR: 20.15, 95% CI: 2.59–156.76) and that bottled water and boiled barrelled water were protective factors (OR: 0.31, 95% CI: 0.13–0.70, and OR: 0.36, 95% CI: 0.16–0.77). A total of 11 rectal samples and 8 barrelled water samples were detected as norovirus-positive, and the genotypes of viral strains were the same (GII). The norovirus that contaminated the barrelled water largely came from the asymptomatic workers. Conclusions This acute gastroenteritis outbreak was caused by barrelled water contaminated by norovirus. The outbreak was controlled after stopping the supply of barrelled water. The barrelled water supply in China represents a potential source of acute gastroenteritis outbreaks due to the lack of surveillance and supervision

  6. Learning to rank atlases for multiple-atlas segmentation.

    PubMed

    Sanroma, Gerard; Wu, Guorong; Gao, Yaozong; Shen, Dinggang

    2014-10-01

    Recently, multiple-atlas segmentation (MAS) has achieved a great success in the medical imaging area. The key assumption is that multiple atlases have greater chances of correctly labeling a target image than a single atlas. However, the problem of atlas selection still remains unexplored. Traditionally, image similarity is used to select a set of atlases. Unfortunately, this heuristic criterion is not necessarily related to the final segmentation performance. To solve this seemingly simple but critical problem, we propose a learning-based atlas selection method to pick up the best atlases that would lead to a more accurate segmentation. Our main idea is to learn the relationship between the pairwise appearance of observed instances (i.e., a pair of atlas and target images) and their final labeling performance (e.g., using the Dice ratio). In this way, we select the best atlases based on their expected labeling accuracy. Our atlas selection method is general enough to be integrated with any existing MAS method. We show the advantages of our atlas selection method in an extensive experimental evaluation in the ADNI, SATA, IXI, and LONI LPBA40 datasets. As shown in the experiments, our method can boost the performance of three widely used MAS methods, outperforming other learning-based and image-similarity-based atlas selection methods.

  7. Learning to Rank Atlases for Multiple-Atlas Segmentation

    PubMed Central

    Sanroma, Gerard; Wu, Guorong; Gao, Yaozong

    2014-01-01

    Recently, multiple-atlas segmentation (MAS) has achieved a great success in the medical imaging area. The key assumption is that multiple atlases have greater chances of correctly labeling a target image than a single atlas. However, the problem of atlas selection still remains unexplored. Traditionally, image similarity is used to select a set of atlases. Unfortunately, this heuristic criterion is not necessarily related to the final segmentation performance. To solve this seemingly simple but critical problem, we propose a learning-based atlas selection method to pick up the best atlases that would lead to a more accurate segmentation. Our main idea is to learn the relationship between the pairwise appearance of observed instances (i.e., a pair of atlas and target images) and their final labeling performance (e.g., using the Dice ratio). In this way, we select the best atlases based on their expected labeling accuracy. Our atlas selection method is general enough to be integrated with any existing MAS method. We show the advantages of our atlas selection method in an extensive experimental evaluation in the ADNI, SATA, IXI, and LONI LPBA40 datasets. As shown in the experiments, our method can boost the performance of three widely used MAS methods, outperforming other learning-based and image-similarity-based atlas selection methods. PMID:24893367

  8. A barrel-related interneuron in layer 4 of rat somatosensory cortex with a high intrabarrel connectivity.

    PubMed

    Koelbl, Christian; Helmstaedter, Moritz; Lübke, Joachim; Feldmeyer, Dirk

    2015-03-01

    Synaptic connections between identified fast-spiking (FS), parvalbumin (PV)-positive interneurons, and excitatory spiny neurons in layer 4 (L4) of the barrel cortex were investigated using patch-clamp recordings and simultaneous biocytin fillings. Three distinct clusters of FS L4 interneurons were identified based on their axonal morphology relative to the barrel column suggesting that these neurons do not constitute a homogeneous interneuron population. One L4 FS interneuron type had an axonal domain strictly confined to a L4 barrel and was therefore named "barrel-confined inhibitory interneuron" (BIn). BIns established reliable inhibitory synaptic connections with L4 spiny neurons at a high connectivity rate of 67%, of which 69% were reciprocal. Unitary IPSPs at these connections had a mean amplitude of 0.9 ± 0.8 mV with little amplitude variation and weak short-term synaptic depression. We found on average 3.7 ± 1.3 putative inhibitory synaptic contacts that were not restricted to perisomatic areas. In conclusion, we characterized a novel type of barrel cortex interneuron in the major thalamo-recipient layer 4 forming dense synaptic networks with L4 spiny neurons. These networks constitute an efficient and powerful inhibitory feedback system, which may serve to rapidly reset the barrel microcircuitry following sensory activation.

  9. A Barrel-Related Interneuron in Layer 4 of Rat Somatosensory Cortex with a High Intrabarrel Connectivity

    PubMed Central

    Koelbl, Christian; Helmstaedter, Moritz; Lübke, Joachim; Feldmeyer, Dirk

    2015-01-01

    Synaptic connections between identified fast-spiking (FS), parvalbumin (PV)-positive interneurons, and excitatory spiny neurons in layer 4 (L4) of the barrel cortex were investigated using patch-clamp recordings and simultaneous biocytin fillings. Three distinct clusters of FS L4 interneurons were identified based on their axonal morphology relative to the barrel column suggesting that these neurons do not constitute a homogeneous interneuron population. One L4 FS interneuron type had an axonal domain strictly confined to a L4 barrel and was therefore named “barrel-confined inhibitory interneuron” (BIn). BIns established reliable inhibitory synaptic connections with L4 spiny neurons at a high connectivity rate of 67%, of which 69% were reciprocal. Unitary IPSPs at these connections had a mean amplitude of 0.9 ± 0.8 mV with little amplitude variation and weak short-term synaptic depression. We found on average 3.7 ± 1.3 putative inhibitory synaptic contacts that were not restricted to perisomatic areas. In conclusion, we characterized a novel type of barrel cortex interneuron in the major thalamo-recipient layer 4 forming dense synaptic networks with L4 spiny neurons. These networks constitute an efficient and powerful inhibitory feedback system, which may serve to rapidly reset the barrel microcircuitry following sensory activation. PMID:24076498

  10. Volatile compounds in a spanish red wine aged in barrels made of Spanish, French, and American oak wood.

    PubMed

    De Simón, Brígida Fernández; Cadahía, Estrella; Jalocha, Jerzy

    2003-12-17

    A red Rioja wine was aged in barrels made of Spanish oak wood (Quercus robur, Quercus petraea,Quercus pyrenaica, and Quercus faginea) during 21 months. The concentrations of some volatile compounds [syringaldehyde, vanillin, eugenol, maltol, guaiacol, 4-ethylphenol, cis and trans isomers of beta-methyl-gamma-octalactone, 2-furfuraldehyde, 5-methyl-2-furfuraldehyde, 5-(hydroxymethyl)-2-furfuraldehyde, and furfuryl alcohol] were studied in these wines and compared with those of the same wine aged in barrels made from French oak of Q. robur (Limousin, France) and Q. petraea (Allier, France) and American oak of Quercus alba (Missouri). Similar concentrations of these compounds were found in wines aged in Spanish and French oak wood barrels, and significantly different concentrations were found with respect to wines aged in barrels made of American oak wood, indicating a different behavior. Thus, wines with different characteristics were obtained, depending on the kind of wood. Also, the kind of wood had an important influence on sensory characteristics of wine during the aging process. Spanish oak wood from Q. robur, Q. petraea, and Q. pyrenaica can be considered to be suitable for barrel production for quality wines, because a wine aged in barrels made of these Spanish oak woods showed similar and intermediate characteristics to those of the same wine aged in French and American oak woods usually used in cooperage.

  11. The phase II ATLAS Pixel upgrade: the Inner Tracker (ITk)

    NASA Astrophysics Data System (ADS)

    Flick, T.

    2017-01-01

    The entire tracking system of the ATLAS experiment will be replaced during the LHC Phase II shutdown (foreseen to take place around 2025) by an all-silicon detector called the ITk (Inner Tracker). The pixel detector will comprise the five innermost layers, and will be instrumented with new sensor and readout electronics technologies to improve the tracking performance and cope with the HL-LHC environment, which will be severe in terms of occupancy and radiation. Several layout options are being investigated. All of these include a barrel part and ring-shaped supports in the endcap regions. All structures will be based on low mass, highly stable and highly thermally conductive carbon-based materials cooled by evaporative carbon dioxide. Different designs of planar, 3D, and CMOS sensors are being investigated to identify the optimal technology for the different pixel layers. While the RD53 Collaboration is developing the new readout chip, the pixel off-detector readout electronics will be implemented in the framework of the general ATLAS trigger and DAQ system. A readout speed of up to 5 Gbit/s per data link (FE-chip) will be needed in the innermost layers going down to 640 Mbit/s for the outermost. This paper presents an overview of the different components of the ITk and the current status of the developments.

  12. The calibration of the resistive plate chambers of ATLAS

    NASA Astrophysics Data System (ADS)

    Di Simone, Andrea

    2010-04-01

    Resistive Plate Chambers (RPC) are used in ATLAS to provide the first level muon trigger in the barrel region. The total size of the system is about 16000 m2 readout by about 350000 electronic channels. To reach the needed trigger performance, a precise knowledge of the detector working point (from the point of view of both high and low voltage settings) is necessary and the high number of readout channels calls for severe requirements on the analysis tools. First of all, high-statistics data samples will have to be used as input. Second, the results would me unmanageable without a proper interface to some database technology. Moreover, the CPU power needed for the analysis makes it necessary to use distributed computing resources. A set of analysis tools will be presented, coping with all the critical aspects of this task, ranging from the use of a dedicated data stream (the so-called muon calibration stream), to the automatic job submission on the GRID, to the implementation of an interface to the conditions database of ATLAS. The integration with Detector Control System information and the impact of the calibration on the performance of the reconstruction algorithms will be discussed as well.

  13. General Dynamics Atlas family

    NASA Astrophysics Data System (ADS)

    Oates, James

    Developments concerning the Atlas family of launch vehicles over the last three or four years are summarized. Attention is given to the center of gravity, load factors, acoustics, pyroshock, low-frequency sinusoidal vibration, and high-frequency random vibration.

  14. ATLAS Metadata Task Force

    SciTech Connect

    ATLAS Collaboration; Costanzo, D.; Cranshaw, J.; Gadomski, S.; Jezequel, S.; Klimentov, A.; Lehmann Miotto, G.; Malon, D.; Mornacchi, G.; Nemethy, P.; Pauly, T.; von der Schmitt, H.; Barberis, D.; Gianotti, F.; Hinchliffe, I.; Mapelli, L.; Quarrie, D.; Stapnes, S.

    2007-04-04

    This document provides an overview of the metadata, which are needed to characterizeATLAS event data at different levels (a complete run, data streams within a run, luminosity blocks within a run, individual events).

  15. Rapid plasticity follows whisker pairing in barrel cortex of the awake rat.

    PubMed

    Sellien, Heike; Ebner, Ford F

    2007-02-01

    Synaptic plasticity can be induced easily throughout life in the rodent somatic sensory cortex. Trimming all but two whiskers on one side of an adult rat's face, called 'whisker pairing', causes the active (intact) whiskers to develop a stronger drive on cortical cells in their respective barrel columns, while inactive (trimmed) whisker efficacy is down-regulated. To date, this type of activity-dependent plasticity has been induced by trimming all but two whiskers, letting the rats explore their environment from 1 day to 1 month, after which cortical responses were analyzed physiologically under anesthesia. Such studies have enhanced our understanding of cortical plasticity, but the anesthesia complicates the examination of changes that occur in the first few hours after whisker trimming. Here we assayed the short-term changes that occur in alert, active animals over a period of hours after whisker trimming. The magnitude of barrel cortex evoked responses was measured in response to stimulation of the cut and paired whiskers of rats under several conditions: (a) whisking in air (control), (b) active whisking of an object by the rat, and (c) epochs of passive whisker stimulation to identify the onset of whisker pairing plasticity changes in cortex. The main difference between whisking in air without contact and passive whisker stimulation is that the former condition induces an increased response to stimulation of inactive cut whiskers, while the latter condition increases the responses to the stimulated whiskers. The results support the conclusion that whisker pairing plasticity in barrel cortex occurs within 4 h after whisker trimming in an awake, alert animal.

  16. The design and performance of a twenty barrel hydrogen pellet injector for Alcator C-Mod

    SciTech Connect

    Urbahn, John A.

    1994-05-01

    A twenty barrel hydrogen pellet injector has been designed, built and tested both in the laboratory and on the Alcator C-Mod Tokamak at MIT. The injector functions by firing pellets of frozen hydrogen or deuterium deep into the plasma discharge for the purpose of fueling the plasma, modifying the density profile and increasing the global energy confinement time. The design goals of the injector are: (1) Operational flexibility, (2) High reliability, (3) Remote operation with minimal maintenance. These requirements have lead to a single stage, pipe gun design with twenty barrels. Pellets are formed by in- situ condensation of the fuel gas, thus avoiding moving parts at cryogenic temperatures. The injector is the first to dispense with the need for cryogenic fluids and instead uses a closed cycle refrigerator to cool the thermal system components. The twenty barrels of the injector produce pellets of four different size groups and allow for a high degree of flexibility in fueling experiments. Operation of the injector is under PLC control allowing for remote operation, interlocked safety features and automated pellet manufacturing. The injector has been extrusively tested and shown to produce pellets reliably with velocities up to 1400 m/sec. During the period from September to November of 1993, the injector was successfully used to fire pellets into over fifty plasma discharges. Experimental results include data on the pellet penetration into the plasma using an advanced pellet tracking diagnostic with improved time and spatial response. Data from the tracker indicates pellet penetrations were between 30 and 86 percent of the plasma minor radius.

  17. Quad-barrel multifunctional electrochemical and ion conductance probe for voltammetric analysis and imaging.

    PubMed

    Nadappuram, Binoy Paulose; McKelvey, Kim; Byers, Joshua C; Güell, Aleix G; Colburn, Alex W; Lazenby, Robert A; Unwin, Patrick R

    2015-04-07

    The fabrication and use of a multifunctional electrochemical probe incorporating two independent carbon working electrodes and two electrolyte-filled barrels, equipped with quasi-reference counter electrodes (QRCEs), in the end of a tapered micrometer-scale pipet is described. This "quad-probe" (4-channel probe) was fabricated by depositing carbon pyrolytically into two diagonally opposite barrels of a laser-pulled quartz quadruple-barrelled pipet. After filling the open channels with electrolyte solution, a meniscus forms at the end of the probe and covers the two working electrodes. The two carbon electrodes can be used to drive local electrochemical reactions within the meniscus while a bias between the QRCEs in the electrolyte channels provides an ion conductance signal that is used to control and position the meniscus on a surface of interest. When brought into contact with a surface, localized high resolution amperometric imaging can be achieved with the two carbon working electrodes with a spatial resolution defined by the meniscus contact area. The substrate can be an insulating material or (semi)conductor, but herein, we focus mainly on conducting substrates that can be connected as a third working electrode. Studies using both aqueous and ionic liquid electrolytes in the probe, together with gold and individual single walled carbon nanotube samples, demonstrate the utility of the technique. Substrate generation-dual tip collection measurements are shown to be characterized by high collection efficiencies (approaching 100%). This hybrid configuration of scanning electrochemical microscopy (SECM) and scanning electrochemical cell microscopy (SECCM) should be powerful for future applications in electrode mapping, as well as in studies of insulating materials as demonstrated by transient spot redox-titration measurements at an electrostatically charged Teflon surface and at a pristine calcite surface, where a functionalized probe is used to follow the

  18. Compressibility and Heating Effects on Pressure Loss and Cooling of a Baffled Cylinder Barrel

    NASA Technical Reports Server (NTRS)

    Goldstein, Arthur W.; Ellerbrock, Herman H., Jr.

    1944-01-01

    Theoretical investigations have shown that, because air is compressible, the pressure-drop requirements for cooling an air-cooled engine will be much greater at high altitudes and high speeds than at sea level and low speeds. Tests were conducted by the NACA to obtain some experimental confirmation of the effect of air compressibility on cooling and pressure loss of a baffled cylinder barrel and to evaluate various methods of analysis. The results reported in the present paper are regarded as preliminary to tests on single-cylinder and multi-cylinder engines. Tests were conducted over a wide range of air flows and density altitudes.

  19. Field Developmental Test of the Dual Barrel Automatic Injector, MARK II.

    DTIC Science & Technology

    1986-04-01

    criteria OCCURRENCE - a detected event 2-PAM-CL BARREL - the larger black-tipped cylinder contained within the autoinjector housing SAFETY PIN - the...yellow plastic protrusion from the safety cap which prevents injector activation SAFETY SCREW - the metal screw which attaches the safety pin to the...2 0 0 (1.1) (1.0) loose safety pin 164 27 10 13 (11.0) (10.7) (18.8) (21.7) NO DEFECTS NOTED 1184 209 42 35 (76.5) (82.9) (70.0) (58.0) UNKNOWN

  20. Classifying β-Barrel Assembly Substrates by Manipulating Essential Bam Complex Members

    PubMed Central

    Mahoney, Tara F.; Ricci, Dante P.

    2016-01-01

    ABSTRACT The biogenesis of the outer membrane (OM) of Escherichia coli is a conserved and vital process. The assembly of integral β-barrel outer membrane proteins (OMPs), which represent a major component of the OM, depends on periplasmic chaperones and the heteropentameric β-barrel assembly machine (Bam complex) in the OM. However, not all OMPs are affected by null mutations in the same chaperones or nonessential Bam complex members, suggesting there are categories of substrates with divergent requirements for efficient assembly. We have previously demonstrated two classes of substrates, one comprising large, low-abundance, and difficult-to-assemble substrates that are heavily dependent on SurA and also Skp and FkpA, and the other comprising relatively simple and abundant substrates that are not as dependent on SurA but are strongly dependent on BamB for assembly. Here, we describe novel mutations in bamD that lower levels of BamD 10-fold and >25-fold without altering the sequence of the mature protein. We utilized these mutations, as well as a previously characterized mutation that lowers wild-type BamA levels, to reveal a third class of substrates. These mutations preferentially cause a marked decrease in the levels of multimeric proteins. This susceptibility of multimers to lowered quantities of Bam machines in the cell may indicate that multiple Bam complexes are needed to efficiently assemble multimeric proteins into the OM. IMPORTANCE The outer membrane (OM) of Gram-negative bacteria, such as Escherichia coli, serves as a selective permeability barrier that prevents the uptake of toxic molecules and antibiotics. Integral β-barrel proteins (OMPs) are assembled by the β-barrel assembly machine (Bam), components of which are conserved in mitochondria, chloroplasts, and all Gram-negative bacteria, including many clinically relevant pathogenic species. Bam is essential for OM biogenesis and accommodates a diverse array of client proteins; however, a

  1. Design studies for the Phase II upgrade of the CMS Barrel Electromagnetic Calorimeter

    NASA Astrophysics Data System (ADS)

    Bornheim, A.

    2017-03-01

    The High Luminosity LHC (HL-LHC) aims to reach the unprecedented integrated luminosity of 3 ab‑1 with an instantaneous luminosity up to 5 × 1034 cm‑2 s‑1. This poses stringent requirements on the radiation resistance of detector components and on the latency of the trigger system. The barrel region of the CMS Electromagnetic Calorimeter will be able to retain the current lead tungstate crystals and avalanche photo diode detectors which will meet the performance requirements throughout the operational lifetime of the HL-LHC. The new front-end electronics and very front-end system required at high luminosities will be described.

  2. Subintimal Double-Barrel Restenting of an Occluded Primary Stented Superficial Femoral Artery

    PubMed Central

    Lohle, Paul N.M.; Lampmann, Leo E.H.

    2007-01-01

    In-stent re-stenosis is a frequent complication of endovascular stents, especially in the superficial femoral artery (SFA). Endovascular re-intervention of in- or peri-stent occlusive disease consists of recanilization through the occluded stent. In our case report, we describe the endovascular treatment of a previously placed stent in the SFA. We unintentionally passed the affected stent subintimally, in a double barrel fashion next to the first stent. The procedure was without any complications and with a successfull angiographic result. At one year follow-up the patient still has no complaints and the stent is still patent. PMID:17410397

  3. Barrel-Clamshell analog in the capillary bridges between two solid spheres

    NASA Astrophysics Data System (ADS)

    Bird, James; Farmer, Timothy

    2014-11-01

    Sessile drops on a wire are known to adopt one of two topological configurations, referred to as a barrel or a clamshell, depending on the volume and contact angle. Here we report on an analogous topological transition for the capillary bridge between two contacting solid spheres. We characterize the transition by numerically computing the bridge shapes that minimize surface energy for a variety of contact angles and volumes. Finally, we are able to develop an exact solution to the non-axisymmetric bridge shapes by relying on symmetries of the geometry.

  4. High precision, low disturbance calibration system for the CMS Barrel Electromagnetic Calorimeter High Voltage apparatus

    NASA Astrophysics Data System (ADS)

    Fasanella, G.

    2017-01-01

    The CMS Electromagnetic Calorimeter utilizes scintillation lead tungstate crystals, with avalanche photodiodes (APD) as photo-detectors in the barrel part. 1224 HV channels bias groups of 50 APD pairs, each at a voltage of about 380 V. The APD gain dependence on the voltage is 3%/V. A stability of better than 60 mV is needed to have negligible impact on the calorimeter energy resolution. Until 2015 manual calibrations were performed yearly. A new calibration system was deployed recently, which satisfies the requirement of low disturbance and high precision. The system is discussed in detail and first operational experience is presented.

  5. Precise mapping of the magnetic field in the CMS barrel yoke using cosmic rays

    SciTech Connect

    Chatrchyan, S.; et al.,

    2010-03-01

    The CMS detector is designed around a large 4 T superconducting solenoid, enclosed in a 12000-tonne steel return yoke. A detailed map of the magnetic field is required for the accurate simulation and reconstruction of physics events in the CMS detector, not only in the inner tracking region inside the solenoid but also in the large and complex structure of the steel yoke, which is instrumented with muon chambers. Using a large sample of cosmic muon events collected by CMS in 2008, the field in the steel of the barrel yoke has been determined with a precision of 3 to 8% depending on the location.

  6. Map transfer from the thalamus to the neocortex: inputs from the barrel field.

    PubMed

    Lokmane, Ludmilla; Garel, Sonia

    2014-11-01

    Sensory perception relies on the formation of stereotyped maps inside the brain. This feature is particularly well illustrated in the mammalian neocortex, which is subdivided into distinct cortical sensory areas that comprise topological maps, such as the somatosensory homunculus in humans or the barrel field of the large whiskers in rodents. How somatosensory maps are formed and relayed into the neocortex remain essential questions in developmental neuroscience. Here, we will present our current knowledge on whisker map transfer in the mouse model, with the goal of linking embryonic and postnatal studies into a comprehensive framework.

  7. Compressibility and Heating Effects on Pressure Loss and Cooling of a Baffled Cylinder Barrel

    NASA Technical Reports Server (NTRS)

    Goldstein, Arthur W; Ellerbrock, Herman H , Jr

    1944-01-01

    Theoretical investigations have shown that, because air is compressible, the pressure-drop requirements for cooling an air-cooled engine will be much greater at high altitudes and high speeds than at sea level and low speeds. Tests were conducted by the NACA to obtain some experimental confirmation of the effect of air compressibility on cooling and pressure loss of a baffled cylinder barrel and to evaluate various methods of analysis. The results reported in the present paper are regarded as preliminary to tests on single-cylinder and multicylinder engines. Tests were conducted over a wide range of air flows and density altitudes.

  8. Multiple brain atlas database and atlas-based neuroimaging system.

    PubMed

    Nowinski, W L; Fang, A; Nguyen, B T; Raphel, J K; Jagannathan, L; Raghavan, R; Bryan, R N; Miller, G A

    1997-01-01

    For the purpose of developing multiple, complementary, fully labeled electronic brain atlases and an atlas-based neuroimaging system for analysis, quantification, and real-time manipulation of cerebral structures in two and three dimensions, we have digitized, enhanced, segmented, and labeled the following print brain atlases: Co-Planar Stereotaxic Atlas of the Human Brain by Talairach and Tournoux, Atlas for Stereotaxy of the Human Brain by Schaltenbrand and Wahren, Referentially Oriented Cerebral MRI Anatomy by Talairach and Tournoux, and Atlas of the Cerebral Sulci by Ono, Kubik, and Abernathey. Three-dimensional extensions of these atlases have been developed as well. All two- and three-dimensional atlases are mutually preregistered and may be interactively registered with an actual patient's data. An atlas-based neuroimaging system has been developed that provides support for reformatting, registration, visualization, navigation, image processing, and quantification of clinical data. The anatomical index contains about 1,000 structures and over 400 sulcal patterns. Several new applications of the brain atlas database also have been developed, supported by various technologies such as virtual reality, the Internet, and electronic publishing. Fusion of information from multiple atlases assists the user in comprehensively understanding brain structures and identifying and quantifying anatomical regions in clinical data. The multiple brain atlas database and atlas-based neuroimaging system have substantial potential impact in stereotactic neurosurgery and radiotherapy by assisting in visualization and real-time manipulation in three dimensions of anatomical structures, in quantitative neuroradiology by allowing interactive analysis of clinical data, in three-dimensional neuroeducation, and in brain function studies.

  9. Distributed analysis in ATLAS

    NASA Astrophysics Data System (ADS)

    Dewhurst, A.; Legger, F.

    2015-12-01

    The ATLAS experiment accumulated more than 140 PB of data during the first run of the Large Hadron Collider (LHC) at CERN. The analysis of such an amount of data is a challenging task for the distributed physics community. The Distributed Analysis (DA) system of the ATLAS experiment is an established and stable component of the ATLAS distributed computing operations. About half a million user jobs are running daily on DA resources, submitted by more than 1500 ATLAS physicists. The reliability of the DA system during the first run of the LHC and the following shutdown period has been high thanks to the continuous automatic validation of the distributed analysis sites and the user support provided by a dedicated team of expert shifters. During the LHC shutdown, the ATLAS computing model has undergone several changes to improve the analysis workflows, including the re-design of the production system, a new analysis data format and event model, and the development of common reduction and analysis frameworks. We report on the impact such changes have on the DA infrastructure, describe the new DA components, and include recent performance measurements.

  10. Endocannabinoid-Dependent Long-Term Potentiation of Synaptic Transmission at Rat Barrel Cortex.

    PubMed

    Maglio, Laura Eva; Noriega-Prieto, José Antonio; Maraver, Maria Jesús; Fernández de Sevilla, David

    2017-03-01

    Brain-derived neurotrophic factor (BDNF) plays a critical role in modulating plasticity in sensory cortices. Indeed, a BDNF-dependent long-term potentiation (LTP) at distal basal excitatory synapses of Layer 5 pyramidal neurons (L5PNs) has been demonstrated in disinhibited rat barrel cortex slices. Although it is well established that this LTP requires the pairing of excitatory postsynaptic potentials (PSPs) with Ca2+ spikes, its induction when synaptic inhibition is working remains unexplored. Here we show that low-frequency stimulation at basal dendrites of L5PNs is able to trigger a PSP followed by an action potential (AP) and a slow depolarization (termed PSP-Ca2+ response) in thalamocortical slices without blocking synaptic inhibition. We demonstrate that AP barrage-mediated release of endocannabinoids (eCBs) from the recorded L5PNs induces PSP-Ca2+ response facilitation and BDNF-dependent LTP. Indeed, this LTP requires the type 1 cannabinoid receptors activation, is prevented by postsynaptic intracellular 1,2-bis(2-aminophenoxy) ethane-N,N,N,N'-tetraacetic acid (BAPTA) or the anandamide membrane transporter inhibitor AM404, and only occurs in L5PNs neurons showing depolarization-induced suppression of inhibition. Additionally, electrical stimulation at the posteromedial thalamic nucleus induced similar response and LTP. These results reveal a novel form of eCB-dependent LTP at L5PNs that could be relevant in the processing of sensory information in the barrel cortex.

  11. Revisiting the oligomerization mechanism of Vibrio cholerae cytolysin, a beta-barrel pore-forming toxin.

    PubMed

    Rai, Anand Kumar; Chattopadhyay, Kausik

    2016-06-03

    Vibrio cholerae cytolysin (VCC) is a membrane-damaging beta-barrel pore-forming toxin (beta-PFT). VCC causes permeabilization of the target membranes by forming transmembrane oligomeric beta-barrel pores. Oligomerization is a key step in the mode of action of any beta-PFT, including that of VCC. Earlier studies have identified some of the key residues in VCC that are directly involved in the generation of the inter-protomer contacts, thus playing critical roles in the oligomerization of the membrane-bound toxin. Analysis of the VCC oligomeric pore structure reveals a potential hydrogen-bond network that appears to connect the sidechain of an asparagine residue (Asn582; located within an inter-domain linker sequence) from one protomer to the backbone CO- and NH-groups of the neighbouring protomer, indirectly through water molecules at most of the inter-protomer interfaces. In the present study, we show that the mutation of Asn582Ala affects the oligomerization and the pore-forming activity of VCC in the membrane lipid bilayer of the synthetic lipid vesicles, while the replacement of Asn582Gln results into the restoration of the oligomeric pore-forming ability of the toxin. Using a number of truncated variants of VCC, having deletion in the C-terminal region of the toxin starting from the Asn582 residue or beyond, we also show that the presence of Asn582 is critically required for the oligomerization of the truncated form of the protein.

  12. The barrel DIRC detector for the P¯ ANDA experiment at FAIR

    NASA Astrophysics Data System (ADS)

    Schwiening, J.; P¯ Group; ANDA Cherenkov Group

    2011-05-01

    The P¯ANDA experiment at FAIR will perform high precision experiments in the charmed quark sector using cooled antiproton beams of unprecedented intensities of L=2×10 32 cm -2 s -1 in the momentum range of 1-15 GeV/ c. The charged particle identification in the barrel region needs a thin detector operating in a strong magnetic field. A ring imaging Cherenkov detector using the DIRC principle is an excellent match to those requirements. This article describes aspects of the design and R&D for the P¯ANDA barrel DIRC detector. The availability of highly pixelated fast photon detectors allows several key improvements compared to the successful BaBar-DIRC detector, some of which were tested in a proton beam at GSI. The optical properties of the radiator bars, made from synthetic fused silica, are critical to the success of the DIRC. Measurements of the attenuation length and reflection coefficient allow the determination of the surface roughness of prototype radiator bars.

  13. Structural (betaalpha)8 TIM barrel model of 3-hydroxy-3-methylglutaryl-coenzyme A lyase.

    PubMed

    Casals, Núria; Gómez-Puertas, Paulino; Pié, Juan; Mir, Cecilia; Roca, Ramón; Puisac, Beatriz; Aledo, Rosa; Clotet, Josep; Menao, Sebastián; Serra, Dolors; Asins, Guillermina; Till, Jacqueline; Elias-Jones, Alun C; Cresto, Juan C; Chamoles, Nestor A; Abdenur, Jose E; Mayatepek, Ertan; Besley, Guy; Valencia, Alfonso; Hegardt, Fausto G

    2003-08-01

    This study describes three novel homozygous missense mutations (S75R, S201Y, and D204N) in the 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) lyase gene, which caused 3-hydroxy-3-methylglutaric aciduria in patients from Germany, England, and Argentina. Expression studies in Escherichia coli show that S75R and S201Y substitutions completely abolished the HMG-CoA lyase activity, whereas D204N reduced catalytic efficiency to 6.6% of the wild type. We also propose a three-dimensional model for human HMG-CoA lyase containing a (betaalpha)8 (TIM) barrel structure. The model is supported by the similarity with analogous TIM barrel structures of functionally related proteins, by the localization of catalytic amino acids at the active site, and by the coincidence between the shape of the substrate (HMG-CoA) and the predicted inner cavity. The three novel mutations explain the lack of HMG-CoA lyase activity on the basis of the proposed structure: in S75R and S201Y because the new amino acid residues occlude the substrate cavity, and in D204N because the mutation alters the electrochemical environment of the active site. We also report the localization of all missense mutations reported to date and show that these mutations are located in the beta-sheets around the substrate cavity.

  14. Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps.

    PubMed

    Si, Dong; He, Jing

    2017-01-01

    Cryo-electron microscopy (cryo-EM) has produced density maps of various resolutions. Although α-helices can be detected from density maps at 5-8 Å resolutions, β-strands are challenging to detect at such density maps due to close-spacing of β-strands. The variety of shapes of β-sheets adds the complexity of β-strands detection from density maps. We propose a new approach to model traces of β-strands for β-barrel density regions that are extracted from cryo-EM density maps. In the test containing eight β-barrels extracted from experimental cryo-EM density maps at 5.5 Å-8.25 Å resolution, StrandRoller detected about 74.26% of the amino acids in the β-strands with an overall 2.05 Å 2-way distance between the detected β-traces and the observed ones, if the best of the fifteen detection cases is considered.

  15. Morphology and physiology of excitatory neurons in layer 6b of the somatosensory rat barrel cortex.

    PubMed

    Marx, Manuel; Feldmeyer, Dirk

    2013-12-01

    Neocortical lamina 6B (L6B) is a largely unexplored layer with a very heterogeneous cellular composition. To date, only little is known about L6B neurons on a systematic and quantitative basis. We investigated the morphological and electrophysiological properties of excitatory L6B neurons in the rat somatosensory barrel cortex using whole-cell patch-clamp recordings and simultaneous biocytin fillings. Subsequent histological processing and computer-assisted 3D reconstructions provided the basis for a classification of excitatory L6B neurons according to their structural and functional characteristics. Three distinct clusters of excitatory L6B neurons were identified: (C1) pyramidal neurons with an apical dendrite pointing towards the pial surface, (C2) neurons with a prominent, "apical"-like dendrite not oriented towards the pia, and (C3) multipolar spiny neurons without any preferential dendritic orientation. The second group could be further subdivided into three categories termed inverted, "tangentially" oriented and "horizontally" oriented neurons. Furthermore, based on the axonal domain two subcategories of L6B pyramidal cells were identified that had either a more barrel-column confined or an extended axonal field. The classification of excitatory L6B neurons provided here may serve as a basis for future studies on the structure, function, and synaptic connectivity of L6B neurons.

  16. Changes in the sotolon content of dry white wines during barrel and bottle aging.

    PubMed

    Lavigne, Valérie; Pons, Alexandre; Darriet, Philippe; Dubourdieu, Denis

    2008-04-23

    GC-MS in electron ionization mode (EI) was used as a simple, sensitive method for assaying sotolon [4,5-dimethyl-3-hydroxy-2(5) H-furanone] in various dry white wines. The impact of barrel-aging conditions, that is, whether yeast lees were present or not, on the formation of sotolon in dry white wines was then studied. The sotolon content was highest in dry white wines aged in new barrels without lees, often exceeding the perception threshold (8 microg/L). These results demonstrated that yeast lees were capable of minimizing the formation of sotolon in dry white wines during aging. The sotolon and oxygen contents of several bottle of the same white wine were also compared 7 years after bottling. At the range of dissolved oxygen concentrations generally measured, between 5 and 100 microg/L, the sotolon content remained below its perception threshold in wine. The perception threshold was exceeded only in wines with oxygen concentrations above 500 microg/L. The presence of dissolved oxygen in the wine samples analyzed also resulted in a decrease in their free sulfur dioxide content.

  17. Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin.

    PubMed

    Remmert, M; Biegert, A; Linke, D; Lupas, A N; Söding, J

    2010-06-01

    Outer membrane beta-barrels (OMBBs) are the major class of outer membrane proteins from Gram-negative bacteria, mitochondria, and plastids. Their transmembrane domains consist of 8-24 beta-strands forming a closed, barrel-shaped beta-sheet around a central pore. Despite their obvious structural regularity, evidence for an origin by duplication or for a common ancestry has not been found. We use three complementary approaches to show that all OMBBs from Gram-negative bacteria evolved from a single, ancestral beta beta hairpin. First, we link almost all families of known single-chain bacterial OMBBs with each other through transitive profile searches. Second, we identify a clear repeat signature in the sequences of many OMBBs in which the repeating sequence unit coincides with the structural beta beta hairpin repeat. Third, we show that the observed sequence similarity between OMBB hairpins cannot be explained by structural or membrane constraints on their sequences. The third approach addresses a longstanding problem in protein evolution: how to distinguish between a very remotely homologous relationship and the opposing scenario of "sequence convergence." The origin of a diverse group of proteins from a single hairpin module supports the hypothesis that, around the time of transition from the RNA to the protein world, proteins arose by amplification and recombination of short peptide modules that had previously evolved as cofactors of RNAs.

  18. Ground and satellite EMIC wave observations in conjunction with BARREL electron precipitation

    NASA Astrophysics Data System (ADS)

    Weaver, C.; Lessard, M.; Engebretson, M. J.; Millan, R. M.; Halford, A.; Horne, R. B.; Singer, H. J.; Green, J. C.

    2013-12-01

    Ground-based and satellite observations of electromagnetic ion-cyclotron (EMIC) waves are presented in conjunction with electron precipitation detected by high altitude balloons from the Balloon Array for RBSP Relativistic Electron Losses (BARREL) campaign. On 17 Jan 2013, a high density solar wind compressed the magnetosphere and four satellites (GOES 13 & 15, Van Allen Probes A & B) as well as several ground stations (Dawson City, Canada and Halley, Antarctica) detected simultaneous EMIC waves across the night sector for about 2.5 hours during the compression (0130 - 0400 UT). The satellites and ground stations cover approximately 10 hours of magnetic local time and four L-shells, suggesting the generation region(s) covers the same extended area. At the strongest point of the compression (around 0300 UT with proton density 50 n/cc, flow pressure 20 nPa, SYM/H 50 nT) BARREL balloon 1G, which magnetically mapped close to GOES 13, detected relativistic electron precipitation concurrently with enhanced EMIC wave activity on GOES 13, which may show a direct observation of EMIC waves scattering relativistic electrons.

  19. Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps

    PubMed Central

    Si, Dong

    2017-01-01

    Cryo-electron microscopy (cryo-EM) has produced density maps of various resolutions. Although α-helices can be detected from density maps at 5–8 Å resolutions, β-strands are challenging to detect at such density maps due to close-spacing of β-strands. The variety of shapes of β-sheets adds the complexity of β-strands detection from density maps. We propose a new approach to model traces of β-strands for β-barrel density regions that are extracted from cryo-EM density maps. In the test containing eight β-barrels extracted from experimental cryo-EM density maps at 5.5 Å–8.25 Å resolution, StrandRoller detected about 74.26% of the amino acids in the β-strands with an overall 2.05 Å 2-way distance between the detected β-traces and the observed ones, if the best of the fifteen detection cases is considered. PMID:28164115

  20. Sam37 is crucial for formation of the mitochondrial TOM–SAM supercomplex, thereby promoting β-barrel biogenesis

    PubMed Central

    Wenz, Lena-Sophie; Ellenrieder, Lars; Qiu, Jian; Bohnert, Maria; Zufall, Nicole; van der Laan, Martin; Becker, Thomas

    2015-01-01

    Biogenesis of mitochondrial β-barrel proteins requires two preprotein translocases, the general translocase of the outer membrane (TOM) and the sorting and assembly machinery (SAM). TOM and SAM form a supercomplex that promotes transfer of β-barrel precursors. The SAM core complex contains the channel protein Sam50, which cooperates with Sam35 in precursor recognition, and the peripheral membrane protein Sam37. The molecular function of Sam37 has been unknown. We report that Sam37 is crucial for formation of the TOM–SAM supercomplex. Sam37 interacts with the receptor domain of Tom22 on the cytosolic side of the mitochondrial outer membrane and links TOM and SAM complexes. Sam37 thus promotes efficient transfer of β-barrel precursors to the SAM complex. We conclude that Sam37 functions as a coupling factor of the translocase supercomplex of the mitochondrial outer membrane. PMID:26416958

  1. A circularly permuted alpha-amylase-type alpha/beta-barrel structure in glucan-synthesizing glucosyltransferases.

    PubMed

    MacGregor, E A; Jespersen, H M; Svensson, B

    1996-01-15

    A motif of amino acid residues, located at the active site and specific beta-strands in alpha-amylases, is recognized in alpha-1,3- and alpha-1,6-glucan-synthesizing glucosyltransferases, leading to the conclusion that these enzymes contain an alpha/beta-barrel closely related to the (beta/alpha)8-fold of the alpha-amylase superfamily. The secondary structure elements of the transferase barrel, however, are circularly permuted to start with an alpha-helix equivalent to helix 3 in the alpha-amylases. Thus, the transferase counterpart of the long third beta-->alpha connection--constituting a domain in the alpha-amylases--is divided to precede and succeed the barrel. This architectural arrangement may be coupled to sucrose scission and glucosyl transfer. The involvement in the mechanism in glucosyltransferases of active site residues recurring in amylolytic enzymes is discussed.

  2. Calorimetry Triggering in ATLAS

    SciTech Connect

    Igonkina, O.; Achenbach, R.; Adragna, P.; Aharrouche, M.; Alexandre, G.; Andrei, V.; Anduaga, X.; Aracena, I.; Backlund, S.; Baines, J.; Barnett, B.M.; Bauss, B.; Bee, C.; Behera, P.; Bell, P.; Bendel, M.; Benslama, K.; Berry, T.; Bogaerts, A.; Bohm, C.; Bold, T.; /UC, Irvine /AGH-UST, Cracow /Birmingham U. /Barcelona, IFAE /CERN /Birmingham U. /Rutherford /Montreal U. /Santa Maria U., Valparaiso /DESY /DESY, Zeuthen /Geneva U. /City Coll., N.Y. /Barcelona, IFAE /CERN /Birmingham U. /Kirchhoff Inst. Phys. /Birmingham U. /Lisbon, LIFEP /Rio de Janeiro Federal U. /City Coll., N.Y. /Birmingham U. /Copenhagen U. /Copenhagen U. /Brookhaven /Rutherford /Royal Holloway, U. of London /Pennsylvania U. /Montreal U. /SLAC /CERN /Michigan State U. /Chile U., Catolica /City Coll., N.Y. /Oxford U. /La Plata U. /McGill U. /Mainz U., Inst. Phys. /Hamburg U. /DESY /DESY, Zeuthen /Geneva U. /Queen Mary, U. of London /CERN /Rutherford /Rio de Janeiro Federal U. /Birmingham U. /Montreal U. /CERN /Kirchhoff Inst. Phys. /Liverpool U. /Royal Holloway, U. of London /Pennsylvania U. /Kirchhoff Inst. Phys. /Geneva U. /Birmingham U. /NIKHEF, Amsterdam /Rutherford /Royal Holloway, U. of London /Rutherford /Royal Holloway, U. of London /AGH-UST, Cracow /Mainz U., Inst. Phys. /Mainz U., Inst. Phys. /Birmingham U. /Hamburg U. /DESY /DESY, Zeuthen /Geneva U. /Kirchhoff Inst. Phys. /Michigan State U. /Stockholm U. /Stockholm U. /Birmingham U. /CERN /Montreal U. /Stockholm U. /Arizona U. /Regina U. /Regina U. /Rutherford /NIKHEF, Amsterdam /Kirchhoff Inst. Phys. /DESY /DESY, Zeuthen /City Coll., N.Y. /University Coll. London /Humboldt U., Berlin /Queen Mary, U. of London /Argonne /LPSC, Grenoble /Arizona U. /Kirchhoff Inst. Phys. /Birmingham U. /Antonio Narino U. /Hamburg U. /DESY /DESY, Zeuthen /Kirchhoff Inst. Phys. /Birmingham U. /Chile U., Catolica /Indiana U. /Manchester U. /Kirchhoff Inst. Phys. /Rutherford /City Coll., N.Y. /Stockholm U. /La Plata U. /Antonio Narino U. /Queen Mary, U. of London /Kirchhoff Inst. Phys. /Antonio Narino U. /Pavia U. /City Coll., N.Y. /Mainz U., Inst. Phys. /Mainz U., Inst. Phys. /Pennsylvania U. /Barcelona, IFAE /Barcelona, IFAE /Chile U., Catolica /Genoa U. /INFN, Genoa /Rutherford /Barcelona, IFAE /Nevis Labs, Columbia U. /CERN /Antonio Narino U. /McGill U. /Rutherford /Santa Maria U., Valparaiso /Rutherford /Chile U., Catolica /Brookhaven /Oregon U. /Mainz U., Inst. Phys. /Barcelona, IFAE /McGill U. /Antonio Narino U. /Antonio Narino U. /Kirchhoff Inst. Phys. /Sydney U. /Rutherford /McGill U. /McGill U. /Pavia U. /Genoa U. /INFN, Genoa /Kirchhoff Inst. Phys. /Kirchhoff Inst. Phys. /Mainz U., Inst. Phys. /Barcelona, IFAE /SLAC /Stockholm U. /Moscow State U. /Stockholm U. /Birmingham U. /Kirchhoff Inst. Phys. /DESY /DESY, Zeuthen /Birmingham U. /Geneva U. /Oregon U. /Barcelona, IFAE /University Coll. London /Royal Holloway, U. of London /Birmingham U. /Mainz U., Inst. Phys. /Birmingham U. /Birmingham U. /Oregon U. /La Plata U. /Geneva U. /Chile U., Catolica /McGill U. /Pavia U. /Barcelona, IFAE /Regina U. /Birmingham U. /Birmingham U. /Kirchhoff Inst. Phys. /Oxford U. /CERN /Kirchhoff Inst. Phys. /UC, Irvine /UC, Irvine /Wisconsin U., Madison /Rutherford /Mainz U., Inst. Phys. /CERN /Geneva U. /Copenhagen U. /City Coll., N.Y. /Wisconsin U., Madison /Rio de Janeiro Federal U. /Wisconsin U., Madison /Stockholm U. /University Coll. London

    2011-12-08

    The ATLAS experiment is preparing for data taking at 14 TeV collision energy. A rich discovery physics program is being prepared in addition to the detailed study of Standard Model processes which will be produced in abundance. The ATLAS multi-level trigger system is designed to accept one event in 2/10{sup 5} to enable the selection of rare and unusual physics events. The ATLAS calorimeter system is a precise instrument, which includes liquid Argon electro-magnetic and hadronic components as well as a scintillator-tile hadronic calorimeter. All these components are used in the various levels of the trigger system. A wide physics coverage is ensured by inclusively selecting events with candidate electrons, photons, taus, jets or those with large missing transverse energy. The commissioning of the trigger system is being performed with cosmic ray events and by replaying simulated Monte Carlo events through the trigger and data acquisition system.

  3. Developmental decline in modulation of glutamatergic synapses in layer IV of the barrel cortex by group II metabotropic glutamate receptors.

    PubMed

    Mateo, Z; Porter, J T

    2015-04-02

    Previously, we demonstrated that group II metabotropic glutamate receptors (mGluRs) reduce glutamate release from thalamocortical synapses during early postnatal development (P7-11). To further examine the role of group II mGluRs in the modulation of somatosensory circuitry, we determined whether group II mGluRs continue to modulate thalamocortical synapses until adulthood and whether these receptors also modulate intra-cortical synapses in the barrel cortex. To address these issues, we examined the effect of the group II mGluR agonists on thalamocortical excitatory postsynaptic currents (EPSCs) and intra-barrel EPSCs in slices from animals of different ages (P7-53). We found that the depression of thalamocortical EPSCs by group II mGluRs rapidly declined after the second postnatal week. In contrast, adenosine continued to depress thalamocortical EPSCs via a presynaptic mechanism in young adult mice (P30-50). Activation of group II mGluRs also reduced intra-barrel EPSCs through a postsynaptic mechanism in young mice (P7-11). Similar to the thalamocortical synapses, the group II mGluR modulation of intra-barrel excitatory synapses declined with development. In young adult animals (P30-50), group II mGluR stimulation had little effect on intra-barrel EPSCs but did hyperpolarize the neurons. Together our results demonstrate that group II mGluRs modulate barrel cortex circuitry by presynaptic and postsynaptic mechanisms depending on the source of the synapse and that this modulation declines with development.

  4. Effectiveness of low impact development practices in two urbanized watersheds: retrofitting with rain barrel/cistern and porous pavement.

    PubMed

    Ahiablame, Laurent M; Engel, Bernard A; Chaubey, Indrajeet

    2013-04-15

    The impacts of urbanization on hydrology and water quality can be minimized with the use of low impact development (LID) practices in urban areas. This study assessed the performance of rain barrel/cistern and porous pavement as retrofitting technologies in two urbanized watersheds of 70 and 40 km(2) near Indianapolis, Indiana. Six scenarios consisting of the watershed existing condition, 25% and 50% implementation of rain barrel/cistern and porous pavement, and 25% rain barrel/cistern combined with 25% porous pavement were evaluated using a proposed LID modeling framework and the Long-Term Hydrologic Impact Assessment (L-THIA)-LID model. The model was calibrated for annual runoff from 1991 to 2000, and validated from 2001 to 2010 for the two watersheds. For the calibration period, R(2) and NSE values were greater than 0.60 and 0.50 for annual runoff and streamflow. Baseflow was not calibrated in this study. During the validation period, R(2) and NSE values were greater than 0.50 for runoff and streamflow, and 0.30 for baseflow in the two watersheds. The various application levels of barrel/cistern and porous pavement resulted in 2-12% reduction in runoff and pollutant loads for the two watersheds. Baseflow loads slightly increased with increase in baseflow by more than 1%. However, reduction in runoff led to reduction in total streamflow and associated pollutant loads by 1-9% in the watersheds. The results also indicate that the application of 50% rain barrel/cistern, 50% porous pavement and 25% rain barrel/cistern combined with 25% porous pavement are good retrofitting options in these watersheds. The L-THIA-LID model can be used to inform management and decision-making for implementation of LID practices at the watershed scale.

  5. The Effects of CO2 Injection and Barrel Temperatures on the Physiochemical and Antioxidant Properties of Extruded Cereals

    PubMed Central

    Thin, Thazin; Myat, Lin; Ryu, Gi-Hyung

    2016-01-01

    The effects of CO2 injection and barrel temperatures on the physiochemical and antioxidant properties of extruded cereals (sorghum, barley, oats, and millet) were studied. Extrusion was carried out using a twin-screw extruder at different barrel temperatures (80, 110, and 140°C), CO2 injection (0 and 500 mL/min), screw speed of 200 rpm, and moisture content of 25%. Extrusion significantly increased the total flavonoid content (TFC) of extruded oats, and β-glucan and protein digestibility (PD) of extruded barley and oats. In contrast, there were significant reductions in 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging activity, PD of extruded sorghum and millet, as well as resistant starch (RS) of extruded sorghum and barley, and total phenolic content (TPC) of all extrudates, except extruded millet. At a barrel temperature of 140°C, TPC in extruded barley was significantly increased, and there was also an increase in DPPH and PD in extruded millet with or without CO2 injection. In contrast, at a barrel temperature of 140°C, the TPC of extruded sorghum decreased, TFC of extruded oats decreased, and at a barrel temperature of 110°C, PD of extruded sorghum without CO2 decreased. Some physical properties [expansion ratio (ER), specific length, piece density, color, and water absorption index] of the extrudates were significantly affected by the increase in barrel temperature. The CO2 injection significantly affected some physical properties (ER, specific length, piece density, water solubility index, and water absorption index), TPC, DPPH, β-glucan, and PD. In conclusion, extruded barley and millet had higher potential for making value added cereal-based foods than the other cereals. PMID:27752504

  6. Double anterograde tracing of outputs from adjacent "barrel columns" of rat somatosensory cortex. Neostriatal projection patterns and terminal ultrastructure.

    PubMed

    Wright, A K; Norrie, L; Ingham, C A; Hutton, E A; Arbuthnott, G W

    1999-01-01

    The sensory input to the neostriatum from groups of cortical cells related to individual facial vibrissae has been investigated at both light- and electron-microscopic resolution. The purpose of the study was to establish the extent to which corticostriatal input maintains the anatomical coding of spatial information that is present in cortex. A double anterograde tracing method was used to identify the output projections from groups of adjacent neurons in different barrel columns, so that the anatomical relationships between two groups could be studied throughout their length. Adjacent whiskers are represented in adjoining cortical barrels and an examination of corticostriatal projections from these reveals two patterns of projection. In one, the anatomical topography is partially preserved; the barrels are represented in adjoining, discrete, areas of the somatosensory neostriatum. In the second projection pattern, the neostriatal innervation is diffuse and adjacent barrels are represented in overlapping regions of the neostriatum. Moreover, the fibres are thinner, have smaller boutons, and are present in both the ipsilateral and contralateral neostriatum. The two systems also enter the neostriatal neuropile separately. The discrete topographic system enters the adjacent neostriatum as collaterals which leave the descending corticofugal fibres at right angles, while the diffuse system enters directly from the corpus callosum at an acute angle. Examination of the neostriatal terminal fields by correlated light and electron microscopy, shows that characteristic axospinous terminals on spiny neurons are made by both groups of cortical fibres, although they differ in their size and morphology. It is concluded that at least two corticostriatal pathways arise from the barrel cortex. One connection maintains some of the anatomical code implicit in the barrel pattern of primary somatosensory cortex, but another, more diffuse, system is overlaid upon it which may carry

  7. The Effects of CO2 Injection and Barrel Temperatures on the Physiochemical and Antioxidant Properties of Extruded Cereals.

    PubMed

    Thin, Thazin; Myat, Lin; Ryu, Gi-Hyung

    2016-09-01

    The effects of CO2 injection and barrel temperatures on the physiochemical and antioxidant properties of extruded cereals (sorghum, barley, oats, and millet) were studied. Extrusion was carried out using a twin-screw extruder at different barrel temperatures (80, 110, and 140°C), CO2 injection (0 and 500 mL/min), screw speed of 200 rpm, and moisture content of 25%. Extrusion significantly increased the total flavonoid content (TFC) of extruded oats, and β-glucan and protein digestibility (PD) of extruded barley and oats. In contrast, there were significant reductions in 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging activity, PD of extruded sorghum and millet, as well as resistant starch (RS) of extruded sorghum and barley, and total phenolic content (TPC) of all extrudates, except extruded millet. At a barrel temperature of 140°C, TPC in extruded barley was significantly increased, and there was also an increase in DPPH and PD in extruded millet with or without CO2 injection. In contrast, at a barrel temperature of 140°C, the TPC of extruded sorghum decreased, TFC of extruded oats decreased, and at a barrel temperature of 110°C, PD of extruded sorghum without CO2 decreased. Some physical properties [expansion ratio (ER), specific length, piece density, color, and water absorption index] of the extrudates were significantly affected by the increase in barrel temperature. The CO2 injection significantly affected some physical properties (ER, specific length, piece density, water solubility index, and water absorption index), TPC, DPPH, β-glucan, and PD. In conclusion, extruded barley and millet had higher potential for making value added cereal-based foods than the other cereals.

  8. The Herschel ATLAS

    NASA Technical Reports Server (NTRS)

    Eales, S.; Dunne, L.; Clements, D.; Cooray, A.; De Zotti, G.; Dye, S.; Ivison, R.; Jarvis, M.; Lagache, G.; Maddox, S.; Negrello, M.; Serjeant, S.; Thompson, M. A.; Van Kampen, E.; Amblard, A.; Andreani, P.; Baes, M.; Beelen, A.; Bendo, G. J.; Bertoldi, F.; Benford, D.; Bock, J.

    2010-01-01

    The Herschel ATLAS is the largest open-time key project that will be carried out on the Herschel Space Observatory. It will survey 570 sq deg of the extragalactic sky, 4 times larger than all the other Herschel extragalactic surveys combined, in five far-infrared and submillimeter bands. We describe the survey, the complementary multiwavelength data sets that will be combined with the Herschel data, and the six major science programs we are undertaking. Using new models based on a previous submillimeter survey of galaxies, we present predictions of the properties of the ATLAS sources in other wave bands.

  9. Molecular correlates of cortical network modulation by long-term sensory experience in the adult rat barrel cortex

    PubMed Central

    Vallès, Astrid; Granic, Ivica; De Weerd, Peter; Martens, Gerard J.M.

    2014-01-01

    Modulation of cortical network connectivity is crucial for an adaptive response to experience. In the rat barrel cortex, long-term sensory stimulation induces cortical network modifications and neuronal response changes of which the molecular basis is unknown. Here, we show that long-term somatosensory stimulation by enriched environment up-regulates cortical expression of neuropeptide mRNAs and down-regulates immediate-early gene (IEG) mRNAs specifically in the barrel cortex, and not in other brain regions. The present data suggest a central role of neuropeptides in the fine-tuning of sensory cortical circuits by long-term experience. PMID:25171421

  10. Simultaneous visualization of cortical barrels and horseradish peroxidase-injected layer 5b vibrissa neurones in the rat.

    PubMed Central

    Ito, M

    1992-01-01

    1. Using diaminobenzidine (DAB) as a chromagen, horseradish peroxidase-injected neurones and cytochrome oxidase-stained barrels were visualized simultaneously in the rat vibrissa cortex. Neurones were initially tested during extracellular recording for responses to whisker deflections. This was followed by intracellular injection of the soma with horseradish peroxidase (HRP) and histological processing to visualize the HRP-stained neurone in an incubation solution which contained, in addition to DAB, cytochrome C for cytochrome oxidase (CO) reaction of the barrels. 2. Recording and intracellular staining were made in layer 5b under urethane anaesthesia. CO-stained barrels were observed in layer 4. Physiologically and morphologically characterized neurones were mostly large pyramidal neurones that responded to more than one whisker and displayed transient-type responses. 3. In tangential sections, the apical dendrite of the HRP-filled neurone was followed from the soma level upward as it ascended through the barrelfield in layer 4. The cross-section of the apical dendrite was found in the periphery of the CO-stained barrel. Using the apical dendrite as a guide, the basal dendritic field of the layer 5b pyramidal neurone was aligned on the pattern of layer 4 barrels. The soma was seen to project basal dendrites in all directions, involving one or two neighbouring barrels/columns. 4. In sixteen neurones examined in tangential sections, a complete spatial tuning map constructed by measuring sensitivity of the neurone to different whiskers could be compared to the basal dendritic field in relation to the pattern of overlying layer 4 barrels. The mean receptive field size in terms of the number of effective whiskers was 5.8 whereas the mean dendritic field size in terms of the number of barrels/columns involved was 2.2. In addition to the well-documented role of intracortical connectivity in elaboration of multi-whisker receptor fields in the cortical neurones, the role

  11. Emissions of polynuclear aromatic hydrocarbons from the open burning of household waste in barrels. Report for July--December 1997

    SciTech Connect

    Lutes, C.C.; Lemieux, P.M.; Abbott, J.A.; Aldous, K.M.

    1997-12-31

    The paper discusses emissions of polynuclear aromatic hydrocarbons (PAHs) from the open burning of household waste in barrels. Using a waste mixture designed to simulate waste generated by an avid cycler and a non-cycler, the emissions of volatile and semivolatile organic compounds, metals, acid gases, and respirable particulates were measured from a 55-gal. (208-L) burn barrel at EPA`s open burning test facility. Total measured PAH emissions ranged from 24 (avid recycler) to 82 mg/kg (non-recycler) of a waste burned. This study provides important data on a potentially significant source of emissions of air toxics.

  12. ATLAS Detector Upgrade Prospects

    NASA Astrophysics Data System (ADS)

    Dobre, M.; ATLAS Collaboration

    2017-01-01

    After the successful operation at the centre-of-mass energies of 7 and 8 TeV in 2010-2012, the LHC was ramped up and successfully took data at the centre-of-mass energies of 13 TeV in 2015 and 2016. Meanwhile, plans are actively advancing for a series of upgrades of the accelerator, culminating roughly ten years from now in the high-luminosity LHC (HL-LHC) project, which will deliver of the order of five times the LHC nominal instantaneous luminosity along with luminosity levelling. The ultimate goal is to extend the dataset from about few hundred fb ‑1 expected for LHC running by the end of 2018 to 3000 fb ‑1 by around 2035 for ATLAS and CMS. The challenge of coping with the HL-LHC instantaneous and integrated luminosity, along with the associated radiation levels, requires further major changes to the ATLAS detector. The designs are developing rapidly for a new all-silicon tracker, significant upgrades of the calorimeter and muon systems, as well as improved triggers and data acquisition. ATLAS is also examining potential benefits of extensions to larger pseudorapidity, particularly in tracking and muon systems. This report summarizes various improvements to the ATLAS detector required to cope with the anticipated evolution of the LHC luminosity during this decade and the next. A brief overview is also given on physics prospects with a pp centre-of-mass energy of 14 TeV.

  13. An Icelandic wind atlas

    NASA Astrophysics Data System (ADS)

    Nawri, Nikolai; Nína Petersen, Gudrun; Bjornsson, Halldór; Arason, Þórður; Jónasson, Kristján

    2013-04-01

    While Iceland has ample wind, its use for energy production has been limited. Electricity in Iceland is generated from renewable hydro- and geothermal source and adding wind energy has not be considered practical or even necessary. However, adding wind into the energy mix is becoming a more viable options as opportunities for new hydro or geothermal power installation become limited. In order to obtain an estimate of the wind energy potential of Iceland a wind atlas has been developed as a part of the Nordic project "Improved Forecast of Wind, Waves and Icing" (IceWind). The atlas is based on mesoscale model runs produced with the Weather Research and Forecasting (WRF) Model and high-resolution regional analyses obtained through the Wind Atlas Analysis and Application Program (WAsP). The wind atlas shows that the wind energy potential is considerable. The regions with the strongest average wind are nevertheless impractical for wind farms, due to distance from road infrastructure and power grid as well as harsh winter climate. However, even in easily accessible regions wind energy potential in Iceland, as measured by annual average power density, is among the highest in Western Europe. There is a strong seasonal cycle, with wintertime power densities throughout the island being at least a factor of two higher than during summer. Calculations show that a modest wind farm of ten medium size turbines would produce more energy throughout the year than a small hydro power plants making wind energy a viable additional option.

  14. Big Sky Carbon Atlas

    DOE Data Explorer

    The Big Sky Carbon Atlas is an online geoportal designed for you to discover, interpret, and access geospatial data and maps relevant to decision support and education on carbon sequestration in the Big Sky Region. In serving as the public face of the Partnership's spatial Data Libraries, the Atlas provides a gateway to geographic information characterizing CO2 sources, potential geologic sinks, terrestrial carbon fluxes, civil and energy infrastructure, energy use, and related themes. In addition to directly serving the BSCSP and its stakeholders, the Atlas feeds regional data to the NatCarb Portal, contributing to a national perspective on carbon sequestration. Established components of the Atlas include a gallery of thematic maps and an interactive map that allows you to: • Navigate and explore regional characterization data through a user-friendly interface • Print your map views or publish them as PDFs • Identify technical references relevant to specific areas of interest • Calculate straight-line or pipeline-constrained distances from point sources of CO2 to potential geologic sink features • Download regional data layers (feature under development) (Acknowledgment to the Big Sky Carbon Sequestration Partnership (BSCSP); see home page at http://www.bigskyco2.org/)

  15. Atlas of NATO.

    ERIC Educational Resources Information Center

    Young, Harry F.

    This atlas provides basic information about the North Atlantic Treaty Organization (NATO). Formed in response to growing concern for the security of Western Europe after World War II, NATO is a vehicle for Western efforts to reduce East-West tensions and the level of armaments. NATO promotes political and economic collaboration as well as military…

  16. Detailed Surface Analysis Of Incremental Centrifugal Barrel Polishing (CBP) Of Single-Crystal Niobium Samples

    SciTech Connect

    Palczewski, Ari D.; Tian, Hui; Trofimova, Olga; Reece, Charles E.

    2011-07-01

    We performed Centrifugal Barrel Polishing (CBP) on single crystal niobium samples/coupons housed in a stainless steel sample holder following the polishing recipe developed at Fermi Lab (FNAL) in 2011 \\cite{C. A. Cooper 2011}. Post CBP, the sample coupons were analyzed for surface roughness, crystal composition and structure, and particle contamination. Following the initial analysis each coupon was high pressure rinsed (HRP) and analyzed for the effectiveness of contamination removal. We were able to obtain the mirror like surface finish after the final stage of tumbling, although some defects and embedded particles remained. In addition, standard HPR appears to have little effect on removing embedded particles which remain after each tumbling step, although final polishing media removal was partially affected by standard/extended HPR.

  17. Repair of Erosion Defects in Gun Barrels by Direct Laser Deposition

    NASA Astrophysics Data System (ADS)

    Nowotny, Steffen; Spatzier, Joerg; Kubisch, Frank; Scharek, Siegfried; Ortner, Jens; Beyer, Eckhard

    2012-12-01

    In recent years the development of functional carbide coatings follows the trend to use composite powders with fine grained hard particles. In addition to thermal spraying, laser cladding is a suitable surface technology in particular for dynamically loaded components, and it is widely used for the manufacturing of coatings as well as complex 3D structures. The paper presents an application addressing the repair of erosion defects in large gun barrels using a novel internal diameter laser cladding head. The most promising material systems are TiC- and VC-based metal-matrix composites. Samples were evaluated in a special erosion test that emulates realistic load conditions. In this test, the materials are exposed to extreme stresses by temperature and pressure shocks, a very reactive atmosphere and erosive particles. As result, TiC-based coatings showed the best performance, and they are applicable for both repair and surface protection of inner surfaces of components and tools.

  18. Twenty barrel in situ pipe gun type solid hydrogen pellet injector for the Large Helical Device.

    PubMed

    Sakamoto, Ryuichi; Motojima, Gen; Hayashi, Hiromi; Inoue, Tomoyuki; Ito, Yasuhiko; Ogawa, Hideki; Takami, Shigeyuki; Yokota, Mitsuhiro; Yamada, Hiroshi

    2013-08-01

    A 20 barrel solid hydrogen pellet injector, which is able to inject 20 cylindrical pellets with a diameter and length of between 3.0 and 3.8 mm at the velocity of 1200 m/s, has been developed for the purpose of direct core fueling in LHD (Large Helical Device). The in situ pipe gun concept with the use of compact cryo-coolers enables stable operation as a fundamental facility in plasma experiments. The combination of the two types of pellet injection timing control modes, i.e., pre-programing mode and real-time control mode, allows the build-up and sustainment of high density plasma around the density limit. The pellet injector has demonstrated stable operation characteristics during the past three years of LHD experiments.

  19. A mutant with bilateral whisker to barrel inputs unveils somatosensory mapping rules in the cerebral cortex.

    PubMed

    Renier, Nicolas; Dominici, Chloe; Erzurumlu, Reha S; Kratochwil, Claudius F; Rijli, Filippo M; Gaspar, Patricia; Chédotal, Alain

    2017-03-28

    In mammals, tactile information is mapped topographically onto the contralateral side of the brain in the primary somatosensory cortex (S1). Here we describe that in Robo3 mouse mutants a sizeable fraction of the trigemino-thalamic inputs project ipsilaterally rather than contralaterally. The resulting mixture of crossed and uncrossed sensory inputs creates bilateral whisker maps in the thalamus and cortex. Surprisingly, these maps are segregated resulting in a duplication of whisker representations and a doubling of the number of barrels without changes of the S1 size. Sensory deprivation shows competitive interactions between the ipsi/contralateral whisker maps. This study reveals that the somatosensory system can form a somatotopic map to integrate bilateral sensory inputs but organizes the maps in a different way than in the visual, or auditory systems. Therefore, while the molecular pre-patterning constrains their orientation and position, the preservation of the continuity of inputs defines the layout of the somatosensory maps.

  20. Phenolic and Aroma Composition of White Wines Produced by Prolonged Maceration and Maturation in Wooden Barrels

    PubMed Central

    Jedrejčić, Nikolina; Ganić, Karin Kovačević; Staver, Mario; Peršurić, Đordano

    2015-01-01

    Summary To investigate the phenolic and aroma composition of Malvazija istarska (Vitis vinifera L.) white wines produced by an unconventional technology comprising prolonged maceration followed by maturation in wooden barrels, representative samples were subjected to analysis by UV/Vis spectrometry, high-performance liquid chromatography, and gas chromatography-mass spectrometry. When compared to standard wines, the investigated samples contained higher levels of dry extract, volatile acidity, lactic acid, phenols, colour intensity, antioxidant activity, majority of monoterpenes, C13-norisoprenoids, methanol, higher alcohols, ethyl acetate, branched-chain esters and esters of hydroxy and dicarboxylic acids, ethylphenols, furans, and acetals, as well as lower levels of malic acid, β-damascenone, straight-chain fatty acids, ethyl and acetate esters. It was estimated that maceration had a stronger influence on phenols, and maturation on volatile aromas. Despite different vintages and technological details, the investigated wines showed a relative homogeneity in the composition, representing a clear and distinctive type. PMID:27904375

  1. Light yield of Kuraray SCSF-78MJ scintillating fibers for the Gluex barrel calorimeter

    SciTech Connect

    Beattie, T D; Fischer, A P; Krueger, S T; Lolos, G J; Papandreou, Z; Plummer, E L; Semenov, A Yu; Semenova, I A; Sichello, L M; Teigro, L A; Smith, E S

    2014-09-01

    Over three quarters of a million 1-mm-diameter 4-m-long Kuraray double-clad SCSF-78MJ (blue-green) scintillating fibers have been used in the construction of the GlueX electromagnetic barrel calorimeter for the Hall D experimental program at Jefferson Lab. The quality of a random sample of 4,750 of these fibers was evaluated by exciting the fibers at their mid point using a 90Sr source in order to determine the light yield using a calibrated vacuum photomultiplier as the photosensor. A novel methodology was developed to extract the number of photoelectrons detected for measurements where individual photoelectron peaks are not discernible. The average number of photoelectrons from this sample of fibers was 9.17±0.6 at a source distance of 200 cm from the PMT.

  2. OPTIMIZING CENTRIFUGAL BARREL POLISHING FOR MIRROR FINISH SRF CAVITY AND RF TESTS AT JEFFERSON LAB

    SciTech Connect

    Ari Palczewski, Rongli Geng, Hui Tian

    2012-07-01

    We performed Centrifugal Barrel Polishing (CBP) on a 1.3 GHz fine grain TESLA single cell cavity and 1.5 GHz fine grain CEBAF high gradient superconducting radio frequency (SRF) single cell cavity following a modified recipe originally developed at Fermi National Accelerator Lab (FNAL). We were able to obtain a mirror like surface similar to that obtained at FNAL, while reducing the number of CBP steps and total processing time. This paper will discuss the change in surface and subsequent cavity performance post CBP, after a 800 C bake (no pre-bake chemistry) and minimal controlled electro-polishing (10 micron). In addition to Q vs. E{sub ACC} thermometry mapping with preheating characteristics and optical inspection of the cavity after CBP will also be shown.

  3. Dosimetry assessments for the reactor pressure vessel and core barrel in UK PWR plant

    SciTech Connect

    Thornton, D.A.; Allen, D.A.; Huggon, A.P.; Picton, D.J.; Robinson, A.T.; Steadman, R.J.; Seren, T.; Lipponen, M.; Kekki, T.

    2011-07-01

    Specimens for the Sizewell B reactor pressure vessel (RPV) inservice steels surveillance program are irradiated inside eight capsules located within the reactor pressure vessel and loaded prior to commissioning. The periodic removal of these capsules and testing of their contents provides material properties data at intervals during the lifetime of the plant. Neutron activation measurements and radiation transport calculations play an essential role in assessing the neutron exposure of the specimens and RPV. Following the most recent withdrawal, seven capsules have now been removed covering nine cycles of reactor operation. This paper summarizes the dosimetry results of the Sizewell B surveillance program obtained to date. In addition to an overview of the calculational methodology it includes a review of the measurements. Finally, it describes an extension of the methodology to provide dosimetry recommendations for the core barrel and briefly discusses the results that were obtained. (authors)

  4. Preliminary results from the multishot opening switch and barrel testing at ARDC

    NASA Astrophysics Data System (ADS)

    Berg, R.; Breitenstein, A.; Carr, S.; Coffman, L.; Cook, H.

    1986-11-01

    Design features and test data are summarized for a multishot switch and barrel of an electromagnetic launch system which has undergone trials at the Armament R&D Center (ARDC). The system features a 12 MJ homopolar generator, a 4.5 micro-H storage inductor and two circularly mounted parallel copper conductors separated by 2.5 cm. Tests focused on the performance of the opening switch with currents up to 500 kA. THe effects of the tests on the condition of the brush and on the operation of the switch are delineated, noting the deformations induced on the brush fingers by magnetic pressure, reducing contact force when the brush was in the input region of the switch. Design changes being implemented to alleviate the problem are outlined.

  5. Microcircuits of excitatory and inhibitory neurons in layer 2/3 of mouse barrel cortex.

    PubMed

    Avermann, Michael; Tomm, Christian; Mateo, Celine; Gerstner, Wulfram; Petersen, Carl C H

    2012-06-01

    Synaptic interactions between nearby excitatory and inhibitory neurons in the neocortex are thought to play fundamental roles in sensory processing. Here, we have combined optogenetic stimulation, whole cell recordings, and computational modeling to define key functional microcircuits within layer 2/3 of mouse primary somatosensory barrel cortex. In vitro optogenetic stimulation of excitatory layer 2/3 neurons expressing channelrhodopsin-2 evoked a rapid sequence of excitation followed by inhibition. Fast-spiking (FS) GABAergic neurons received large-amplitude, fast-rising depolarizing postsynaptic potentials, often driving action potentials. In contrast, the same optogenetic stimulus evoked small-amplitude, subthreshold postsynaptic potentials in excitatory and non-fast-spiking (NFS) GABAergic neurons. To understand the synaptic mechanisms underlying this network activity, we investigated unitary synaptic connectivity through multiple simultaneous whole cell recordings. FS GABAergic neurons received unitary excitatory postsynaptic potentials with higher probability, larger amplitudes, and faster kinetics compared with NFS GABAergic neurons and other excitatory neurons. Both FS and NFS GABAergic neurons evoked robust inhibition on postsynaptic layer 2/3 neurons. A simple computational model based on the experimentally determined electrophysiological properties of the different classes of layer 2/3 neurons and their unitary synaptic connectivity accounted for key aspects of the network activity evoked by optogenetic stimulation, including the strong recruitment of FS GABAergic neurons acting to suppress firing of excitatory neurons. We conclude that FS GABAergic neurons play an important role in neocortical microcircuit function through their strong local synaptic connectivity, which might contribute to driving sparse coding in excitatory layer 2/3 neurons of mouse barrel cortex in vivo.

  6. Water relations and photosynthesis of a barrel cactus, Ferocactus acanthodes, in the Colorado desert.

    PubMed

    Nobel, Park S

    1977-06-01

    The structural characteristics, water relations, and photosynthesis of Ferocactus acanthodes (Lemaire) Britton and Rose, a barrel cactus exhibiting Crassulacean acid metabolism (CAM), were examined in its native habitat in the western Colorado desert. Water storage in its succulent stem permitted nighttime stomatal opening ot continue for about 40 days after the soil water potential became less than that of the stem, a period whe the plant would be unable to extract water from the soil. After 7 months of drought and consequent unreplenished water loss from a plant, diurnal stomatal activity was not observed and the stem osmotic pressure was 6.4 bars, more than double the value measured during wet periods with nighttime stomatal opening. F. acanthodes had a shallow root system (mean depth of 8 cm) which responded within 24 h to rainfall.When the nocturnal stem surface temperature was raised from 8.0° C to 35.0° C, the stomatal resistance increased 4-fold, indicating that cool nighttime temperatures are advantageous for gas exchange by F. acanthodes. Moreover, the optimal temperature for CO2 uptake in the dark was only 12.6° C. CO2 uptake at night became maximal for 3.0 mEinsteins cm(-2) of photosynthetically active radiation incident during the preceding day, and the minimum number of incident quanta absorbed per CO2 fixed was 68. The transpiration ratio (mass of water transpired/mass of CO2 fixed) had the relatively low value of 70 for an entire year, consistent with values obtained for other CAM plants. The total amount of water annually diverted to the floral structures was about 6% of the stem wet weight. The annual growth increment estimated from the net CO2 assimilation corresponded to about 10% of the stem mass for barrel cacti 34 cm tall, in agreement with measured dimension changes, and indicated that such plants were about 26 years old.

  7. Lhx2 regulates a cortex-specific mechanism for barrel formation

    PubMed Central

    Shetty, Ashwin S.; Godbole, Geeta; Maheshwari, Upasana; Padmanabhan, Hari; Chaudhary, Rahul; Muralidharan, Bhavana; Hou, Pei-Shan; Monuki, Edwin S.; Kuo, Hung-Chih; Rema, V.; Tole, Shubha

    2013-01-01

    LIM homeodomain transcription factors are critical regulators of early development in multiple systems but have yet to be examined for a role in circuit formation. The LIM homeobox gene Lhx2 is expressed in cortical progenitors during development and also in the superficial layers of the neocortex in maturity. However, analysis of Lhx2 function at later stages of cortical development has been hampered by severe phenotypes associated with early loss of function. We identified a particular Cre-recombinase line that acts in the cortical primordium after its specification is complete, permitting an analysis of Lhx2 function in neocortical lamination, regionalization, and circuit formation by selective elimination of Lhx2 in the dorsal telencephalon. We report a profound disruption of cortical neuroanatomical and molecular features upon loss of Lhx2 in the cortex from embryonic day 11.5. A unique feature of cortical circuitry, the somatosensory barrels, is undetectable, and molecular patterning of cortical regions appears disrupted. Surprisingly, thalamocortical afferents innervate the mutant cortex with apparently normal regional specificity. Electrophysiological recordings reveal a loss of responses evoked by stimulation of individual whiskers, but responses to simultaneous stimulation of multiple whiskers were present, suggesting that thalamic afferents are unable to organize the neurocircuitry for barrel formation because of a cortex-specific requirement of Lhx2. We report that Lhx2 is required for the expression of transcription factor paired box gene 6, axon guidance molecule Ephrin A5, and the receptor NMDA receptor 1. These genes may mediate Lhx2 function in the formation of specialized neurocircuitry necessary for neocortical function. PMID:24262147

  8. Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks

    PubMed Central

    Vijayabaskar, M. S.; Vishveshwara, Saraswathi

    2012-01-01

    There are many well-known examples of proteins with low sequence similarity, adopting the same structural fold. This aspect of sequence-structure relationship has been extensively studied both experimentally and theoretically, however with limited success. Most of the studies consider remote homology or “sequence conservation” as the basis for their understanding. Recently “interaction energy” based network formalism (Protein Energy Networks (PENs)) was developed to understand the determinants of protein structures. In this paper we have used these PENs to investigate the common non-covalent interactions and their collective features which stabilize the TIM barrel fold. We have also developed a method of aligning PENs in order to understand the spatial conservation of interactions in the fold. We have identified key common interactions responsible for the conservation of the TIM fold, despite high sequence dissimilarity. For instance, the central beta barrel of the TIM fold is stabilized by long-range high energy electrostatic interactions and low-energy contiguous vdW interactions in certain families. The other interfaces like the helix-sheet or the helix-helix seem to be devoid of any high energy conserved interactions. Conserved interactions in the loop regions around the catalytic site of the TIM fold have also been identified, pointing out their significance in both structural and functional evolution. Based on these investigations, we have developed a novel network based phylogenetic analysis for remote homologues, which can perform better than sequence based phylogeny. Such an analysis is more meaningful from both structural and functional evolutionary perspective. We believe that the information obtained through the “interaction conservation” viewpoint and the subsequently developed method of structure network alignment, can shed new light in the fields of fold organization and de novo computational protein design. PMID:22615547

  9. Interplay between Drying and Stability of a TIM Barrel Protein: A Combined Simulation-Experimental Study

    PubMed Central

    Das, Payel; Kapoor, Divya; Halloran, Kevin T.; Zhou, Ruhong; Matthews, C. Robert

    2013-01-01

    Recent molecular dynamics simulations have suggested important roles for nanoscale dewetting on the stability, function, and folding dynamics of proteins. Using a synergistic simulation-experimental approach on the αTS TIM barrel protein, we validate this hypothesis by revealing the occurrence of drying inside hydrophobic amino acid clusters and its manifestation on experimental measures of protein stability and structure. Cavities created within three clusters of branched aliphatic amino acids, isoleucines, leucines and valines (ILV), were found to experience strong water density fluctuations or intermittent dewetting transitions in simulations. Individually substituting 10 residues in the large ILV cluster at the N-terminus with the less hydrophobic alanine showed a weakening or diminishing effect on dewetting that depended on the site of the mutation. Our simulations also demonstrated that replacement of buried leucines with the isosteric and polar asparagine enhanced the wetting of the N- and C-terminal clusters. Experimental results on the stability, secondary structure and compactness of the native and intermediate states for the asparagine variants are consistent with the preferential drying of the large N-terminal cluster in the intermediate. By contrast, the region encompassing the small C-terminal cluster only experiences partial drying in the intermediate and its structure and stability are unaffected by the asparagine substitution. Surprisingly, the structural distortions required to accommodate the replacement of leucine by asparagine in the N-terminal cluster revealed the existence of alternative stable folds in the native basin. This combined simulation-experimental study demonstrates the critical role of drying in hydrophobic ILV clusters to the folding and stability of the αTS TIM barrel. PMID:23293932

  10. Material wear and failure mode analysis of breakfast cereal extruder barrels and screw elements

    NASA Astrophysics Data System (ADS)

    Mastio, Michael Joseph, Jr.

    2005-11-01

    Nearly seventy-five years ago, the single screw extruder was introduced as a means to produce metal products. Shortly after that, the extruder found its way into the plastics industry. Today much of the world's polymer industry utilizes extruders to produce items such as soda bottles, PVC piping, and toy figurines. Given the significant economical advantages of extruders over conventional batch flow systems, extruders have also migrated into the food industry. Food applications include the meat, pet food, and cereal industries to name just a few. Cereal manufacturers utilize extruders to produce various forms of Ready-to-Eat (RTE) cereals. These cereals are made from grains such as rice, oats, wheat, and corn. The food industry has been incorrectly viewed as an extruder application requiring only minimal energy control and performance capability. This misconception has resulted in very little research in the area of material wear and failure mode analysis of breakfast cereal extruders. Breakfast cereal extruder barrels and individual screw elements are subjected to the extreme pressures and temperatures required to shear and cook the cereal ingredients, resulting in excessive material wear and catastrophic failure of these components. Therefore, this project focuses on the material wear and failure mode analysis of breakfast cereal extruder barrels and screw elements, modeled as a Discrete Time Markov Chain (DTMC) process in which historical data is used to predict future failures. Such predictive analysis will yield cost savings opportunities by providing insight into extruder maintenance scheduling and interchangeability of screw elements. In this DTMC wear analysis, four states of wear are defined and a probability transition matrix is determined based upon 24,041 hours of operational data. This probability transition matrix is used to predict when an extruder component will move to the next state of wear and/or failure. This information can be used to determine

  11. Characterizing radiation belt electron precipitation losses using BARREL (Balloon Array for RBSP Relativistic Electron Losses) data.

    NASA Astrophysics Data System (ADS)

    Bowers, G. S.; Smith, D. M.; Millan, R. M.; Sample, J. G.; McCarthy, M.; Woodger, L. A.; Halford, A. J.; Liang, X.

    2015-12-01

    Precipitation loss is a process whereby charged particles trapped in the radiation belts scatter into the Earth's atmosphere and are removed from the belt population. Balloon-borne x-ray detectors and satellites like SAMPEX have generally observed precipitation losses of three types, here characterized by their MLT distribution and related e-folding energy of the inferred precipitating electron energy spectrum, the third characterized by its burstiness and brief duration: soft (isotropic in MLT with e-folding for balloons between 50-100 keV, for SAMPEX between 100-300 keV), hard (concentrated in the dusk-to-midnight sector with e-folding for balloons > 200 keV, for SAMPEX > 400 keV), and microbursts (concentrated in the dawn-to-noon sector, bursty and very short temporal structure < 1s). Soft precipitation occurs much more often than the others, but has received less attention in the literature even though recent analysis of observed SAMPEX losses has shown that soft precipitation may account for the greatest electron loss from the quiet time radiation belts. The goal of this project is to compare/reconcile the different spectral characterizations of soft precipitation observed by BARREL and SAMPEX, and seek to understand the wave scattering mechanisms responsible for these losses.For this work we will present the 2013/2014 observed BARREL precipitation events cataloged according to type, (soft, hard, microburst), MLT and L distribution, and geomagnetic/space weather conditions. In particular, we will use Van Allen Probe data to define the state of the belts and the position of the balloon relative to the plasmapause and trapping boundary before and after precipitation events.

  12. Determination of local optical properties of the rat barrel cortex during neural activation: Monte-Carlo approach to light propagation

    NASA Astrophysics Data System (ADS)

    Migacheva, E. V.; Chamot, S. R.; Seydoux, O.; Weber, B.; Depeursinge, C.; Marquet, P.; Magistretti, P. J.

    2010-04-01

    Spatially-spectrally-resolved reflectance measurements allow in vivo measuring the optical coefficients of absorption and scattering within the cortical tissue. This method, if applied to neural tissue during enhanced activity, could allow a straightforward monitoring of the blood oxygen saturation changes occurring in the brain cortex during hemodynamic responses. Furthermore, it may provide valuable information on possible absorption and scattering changes occurring during stimulation. The feasibility of such measurements was investigated by carrying a preliminary numerical study using a Monte-Carlo light propagation routine. Experimental parameters such as the geometry of the optical probe, baseline cortex optical coefficients retrieved from the literature and anatomical characteristics of the rat barrel cortex were used as an input for the simulations. The sensitivity of the probe to the local variations of optical coefficients was investigated with this numerical approach. Additionally, the influence of the barrel cortex dimensions and the probe positioning relatively to the activated region were studied for instrumental optimization purpose. It was found that typical variations of optical coefficients can be detected if the activated region of barrel cortex has a volume of typically 1 mm3 or larger. The decay of the probe sensitivity to changes was studied as a function of the depth of the activated region. The results showed that the best sensitivity is achieved by placing the light injection fiber of the optical probe aligned onto the center of the cylindrical barrel.

  13. Molecular Correlates of Cortical Network Modulation by Long-Term Sensory Experience in the Adult Rat Barrel Cortex

    ERIC Educational Resources Information Center

    Vallès, Astrid; Granic, Ivica; De Weerd, Peter; Martens, Gerard J. M.

    2014-01-01

    Modulation of cortical network connectivity is crucial for an adaptive response to experience. In the rat barrel cortex, long-term sensory stimulation induces cortical network modifications and neuronal response changes of which the molecular basis is unknown. Here, we show that long-term somatosensory stimulation by enriched environment…

  14. Construction of Ag/AgCl Reference Electrode from Used Felt-Tipped Pen Barrel for Undergraduate Laboratory

    ERIC Educational Resources Information Center

    Inamdar, Shaukatali N.; Bhat, Mohsin A.; Haram, Santosh K.

    2009-01-01

    A reference electrode is one of the prerequisites of electrochemical investigations. Many electrodes are commercially available but are expensive and prone to accidental breakage by students. Here we report a simple, easy-to-fabricate, inexpensive, reliable, unbreakable, and reproducible Ag/AgCl reference electrode. The empty barrel of a…

  15. Texture coarseness responsive neurons and their mapping in layer 2–3 of the rat barrel cortex in vivo

    PubMed Central

    Garion, Liora; Dubin, Uri; Rubin, Yoav; Khateb, Mohamed; Schiller, Yitzhak; Azouz, Rony; Schiller, Jackie

    2014-01-01

    Texture discrimination is a fundamental function of somatosensory systems, yet the manner by which texture is coded and spatially represented in the barrel cortex are largely unknown. Using in vivo two-photon calcium imaging in the rat barrel cortex during artificial whisking against different surface coarseness or controlled passive whisker vibrations simulating different coarseness, we show that layer 2–3 neurons within barrel boundaries differentially respond to specific texture coarsenesses, while only a minority of neurons responded monotonically with increased or decreased surface coarseness. Neurons with similar preferred texture coarseness were spatially clustered. Multi-contact single unit recordings showed a vertical columnar organization of texture coarseness preference in layer 2–3. These findings indicate that layer 2–3 neurons perform high hierarchical processing of tactile information, with surface coarseness embodied by distinct neuronal subpopulations that are spatially mapped onto the barrel cortex. DOI: http://dx.doi.org/10.7554/eLife.03405.001 PMID:25233151

  16. The cooling capabilities of C2F6/C3F8 saturated fluorocarbon blends for the ATLAS silicon tracker

    NASA Astrophysics Data System (ADS)

    Bates, R.; Battistin, M.; Berry, S.; Bitadze, A.; Bonneau, P.; Bousson, N.; Boyd, G.; Botelho-Direito, J.; Crespo-Lopez, O.; DiGirolamo, B.; Doubek, M.; Giugni, D.; Hallewell, G.; Lombard, D.; Katunin, S.; McMahon, S.; Nagai, K.; Robinson, D.; Rossi, C.; Rozanov, A.; Vacek, V.; Zwalinski, L.

    2015-03-01

    We investigate and address the performance limitations of the ATLAS silicon tracker fluorocarbon evaporative cooling system operation in the cooling circuits of the barrel silicon microstrip (SCT) sub-detector. In these circuits the minimum achievable evaporation temperatures with C3F8 were higher than the original specification, and were thought to allow an insufficient safety margin against thermal runaway in detector modules subject to a radiation dose initially foreseen for 10 years operation at LHC. We have investigated the cooling capabilities of blends of C3F8 with molar admixtures of up to 25% C2F6, since the addition of the more volatile C2F6 component was expected to allow a lower evaporation temperature for the same evaporation pressure.A custom built recirculator allowed the in-situ preparation of C2F6/C3F8 blends. These were circulated through a representative mechanical and thermal setup reproducing an as-installed ATLAS SCT barrel tracker cooling circuit. Blend molar compositions were verified to a precision of 3.10-3 in a custom ultrasonic instrument.Thermal measurements in a range of C2F6/C3F8 blends were compared with measurements in pure C3F8. These indicated that a blend with 25% C2F6 would allow a reduction in evaporation temperature of around 9oC to below -15oC, even at the highest module power dissipations envisioned after 10 years operation at LHC. Such a reduction would allow more than a factor two in safety margin against temperature dependant leakage power induced thermal runaway.Furthermore, a blend containing up to 25% C2F6 could be circulated without changes to the on-detector elements of the existing ATLAS inner detector evaporative cooling system.

  17. Resilience to disturbance despite limited dispersal and self-recruitment in tropical barrel sponges: implications for conservation and management.

    PubMed

    Bell, James J; Smith, David; Hannan, Danielle; Haris, Abdul; Jompa, Jamaludin; Thomas, Luke

    2014-01-01

    While estimates of connectivity are important for effective management, few such estimates are available for reef invertebrates other than for corals. Barrel sponges are one of the largest and most conspicuous members of the coral reef fauna across the Indo-Pacific and given their large size, longevity and ability to process large volumes of water, they have a major role in reef functioning. Here we used a panel of microsatellite markers to characterise the genetic structure of two barrel sponge species, Xestospongia testudinaria and a currently undescribed Xestospongia species. We sampled across seven populations in the Wakatobi Marine National Park, SE Sulawesi (Indonesia) spanning a spatial scale of approximately 2 to 70 km, and present the first estimates of demographic connectivity for coral reef sponges. Genetic analyses showed high levels of genetic differentiation between all populations for both species, but contrasting patterns of genetic structuring for the two species. Autocorrelation analyses showed the likely dispersal distances of both species to be in the order of 60 and 140 m for Xestopongia sp. and Xestospongia testudinaria, respectively, which was supported by assignment tests that showed high levels of self-recruitment (>80%). We also found consistently high inbreeding coefficients across all populations for both species. Our study highlights the potential susceptibility of barrel sponges to environmental perturbations because they are generally long-lived, slow growing, have small population sizes and are likely to be reliant on self-recruitment. Surprisingly, despite these features we actually found the highest abundance of both barrel sponge species (although they were generally smaller) at a site that has been severely impacted by humans over the last fifty years. This suggests that barrel sponges exhibit environmental adaptation to declining environmental quality and has important implications for the management and conservation of these

  18. Improving atlas methodology

    USGS Publications Warehouse

    Robbins, C.S.; Dowell, B.A.; O'Brien, J.

    1987-01-01

    We are studying a sample of Maryland (2 %) and New Hampshire (4 %) Atlas blocks and a small sample in Maine. These three States used different sampling methods and block sizes. We compare sampling techniques, roadside with off-road coverage, our coverage with that of the volunteers, and different methods of quantifying Atlas results. The 7 1/2' (12-km) blocks used in the Maine Atlas are satisfactory for coarse mapping, but are too large to enable changes to be detected in the future. Most states are subdividing the standard 7 1/2' maps into six 5-km blocks. The random 1/6 sample of 5-km blocks used in New Hampshire, Vermont (published 1985), and many other states has the advantage of permitting detection of some changes in the future, but the disadvantage of leaving important habitats unsampled. The Maryland system of atlasing all 1,200 5-km blocks and covering one out of each six by quarterblocks (2 1/2-km) is far superior if enough observers can be found. A good compromise, not yet attempted, would be to Atlas a 1/6 random sample of 5-km blocks and also one other carefully selected (non-random) block on the same 7 1/2' map--the block that would include the best sample of habitats or elevations not in the random block. In our sample the second block raised the percentage of birds found from 86% of the birds recorded in the 7 1/2' quadrangle to 93%. It was helpful to list the expected species in each block and to revise this list annually. We estimate that 90-100 species could be found with intensive effort in most Maryland blocks; perhaps 95-105 in New Hampshire. It was also helpful to know which species were under-sampled so we could make a special effort to search for these. A total of 75 species per block (or 75% of the expected species in blocks with very restricted habitat diversity) is considered a practical and adequate goal in these States. When fewer than 60 species are found per block, a high proportion of the rarer species are missed, as well as some of

  19. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-03-01

    We report the following transients found by the ATLAS survey (Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is robotically operational on Haleakala (see http://www.fallingstar.com).

  20. Brain templates and atlases.

    PubMed

    Evans, Alan C; Janke, Andrew L; Collins, D Louis; Baillet, Sylvain

    2012-08-15

    The core concept within the field of brain mapping is the use of a standardized, or "stereotaxic", 3D coordinate frame for data analysis and reporting of findings from neuroimaging experiments. This simple construct allows brain researchers to combine data from many subjects such that group-averaged signals, be they structural or functional, can be detected above the background noise that would swamp subtle signals from any single subject. Where the signal is robust enough to be detected in individuals, it allows for the exploration of inter-individual variance in the location of that signal. From a larger perspective, it provides a powerful medium for comparison and/or combination of brain mapping findings from different imaging modalities and laboratories around the world. Finally, it provides a framework for the creation of large-scale neuroimaging databases or "atlases" that capture the population mean and variance in anatomical or physiological metrics as a function of age or disease. However, while the above benefits are not in question at first order, there are a number of conceptual and practical challenges that introduce second-order incompatibilities among experimental data. Stereotaxic mapping requires two basic components: (i) the specification of the 3D stereotaxic coordinate space, and (ii) a mapping function that transforms a 3D brain image from "native" space, i.e. the coordinate frame of the scanner at data acquisition, to that stereotaxic space. The first component is usually expressed by the choice of a representative 3D MR image that serves as target "template" or atlas. The native image is re-sampled from native to stereotaxic space under the mapping function that may have few or many degrees of freedom, depending upon the experimental design. The optimal choice of atlas template and mapping function depend upon considerations of age, gender, hemispheric asymmetry, anatomical correspondence, spatial normalization methodology and disease

  1. The read-out and control system For the ATLAS SemiConductor Tracker

    NASA Astrophysics Data System (ADS)

    Sandaker, H.

    2005-04-01

    The SemiConductor Tracker (SCT) in the ATLAS experiment has entered the stage of system assembly. Around 35% of the 4088 silicon modules are already produced, tested and will soon be mounted on the four barrel cylinders and 18 end-cap disks which make up the SCT. A new Data Acquisition System (DAQ) will provide binary readout, via front-end ASICs, of 16,000 silicon wafers and 6.3 million read-out channels using optical links. A new Detector Control System (DCS) will control up to 500 V bias voltage and the 30 kW low voltage power to the modules, as well as monitor the C3F8 evaporative cooling system, humidity and temperatures. Recently, several macro-assembly sites have mounted modules on both end-cap and barrel prototype structures and gained first experience with system-operation of the SCT. This presentation will give an overview of the full system required to operate and read-out a large-scale silicon detector. A description of both off-detector systems, DAQ and DCS, and their interactions will be presented, as well as the macro-assembly status.

  2. Coherence and Correlates of Level 1 Perspective Taking in Young Children.

    ERIC Educational Resources Information Center

    Klemchuk, Helen P.; And Others

    1990-01-01

    A total of 86 girls of 2 to 6 years completed Level 1 spatial and affective perspective-taking tasks. Results showed increasingly accurate performance with age. Task intercorrelations and factor analyses provided support for the coherence of the Level 1 perspective-taking construct. (Author/BB)

  3. Manual of Tape Scripts: Italian, Level 1. Curriculum Bulletin, 1968-69 Series, Number 12.

    ERIC Educational Resources Information Center

    Lipton, Gladys; And Others

    This manual of tape scripts, together with a set of foreign language audio tapes for level 1 Italian, was prepared to support the curriculum bulletin, New York City Foreign Language Program for Schools: Italian, Levels 1-4. Vocabulary, repetition, transformation, and recombination drills on specific grammatical features allow further development…

  4. Manual of Tape Scripts: German, Level 1. Curriculum Bulletin, 1968-69 Series, Number 11.

    ERIC Educational Resources Information Center

    Lipton, Gladys; And Others

    This manual of tape scripts, together with a set of foreign language audio tapes for level 1 German, was prepared to support the curriculum bulletin, New York City Foreign Language Program for Secondary Schools: German, Levels 1-4. Vocabulary, repetition, transformation, and recombination drills on specific grammatical features allow further…

  5. Information Technology, Level 1, Level 3, and Level 4. Information Technology for End Users, Levels 1-3. National Vocational Qualifications.

    ERIC Educational Resources Information Center

    Business and Technology Education Council, London (England).

    Britain's National Vocational Qualifications (NVQs) are work qualifications that measure what an employee or potential employee can do as well as how much he or she knows and understands about a particular job. Used as written proof of usable workplace skills that can be put to profitable use by an employer, NVQs range from basic Level 1, for…

  6. Summary of types of radiation belt electron precipitation observed by BARREL

    NASA Astrophysics Data System (ADS)

    Halford, Alexa

    2016-07-01

    The Balloon Array for Relativistic Radiation belt Electron Loss (BARREL) was able to infer precipitation of radiation belt electrons on multiple time scales and due to multiple loss mechanisms. One storm will be specifically highlighted which occurred on 26 January 2013 when a solar wind shock hit the Earth. Although MeV electrons were observed to be lost due to an EMIC wave event [Zhang et al in prep], and multiple periods of electron loss during substorms were observed [Rae et al submitted JGR, Mann et al in prep], we will consider an event period where loss associated with multiple time scales, and thus possibly different loss mechanisms was observed from 1000 - 1200 UT on 26 January 2013. At about 1005 UT on 26 January 2013 an injection of radiation belt electrons followed by drift echoes for energies of ˜80 - 400 keV. BARREL observed X-rays with energies less than 180 keV associated with multiple temporal structures during the drift echo event period. The Van Allen Probes were at similar L-values but upwards of 2 hours away in MLT. Upper band chorus and ULF waves were observed during the event period. Throughout the beginning of the event period, microbursts were clearly observed. During this time lower band chorus waves as well as time domain structures were observed at Van Allen Probe A located upwards of 2 hours away in MLT. This large difference in MLT meant that neither potential loss mechanism was able to be clearly associated with the microbursts. As the lower band chorus and time domain structures were observed to recede, the microbursts were also observed to subside. ULF time scale modulation of the X-rays was also observed throughout most of the event period. We will examine if the ULF waves are the cause of the precipitation themselves, or are modulating the loss of particles from a secondary loss mechanism [Brito et al 2015 JGR, Rae et al Submitted JGR]. Although the 100s ms and ULF time scales are clearly observed, there is an ˜20 minute

  7. Lipid Bilayer-Bound Conformation of an Integral Membrane Beta Barrel Protein by Multidimensional MAS NMR

    PubMed Central

    Eddy, Matthew T.; Su, Yongchao; Silvers, Robert; Andreas, Loren; Clark, Lindsay; Wagner, Gerhard; Pintacuda, Guido; Emsley, Lyndon; Griffin, Robert G.

    2015-01-01

    The human voltage dependent anion channel 1 (VDAC) is a 32 kDa β-barrel integral membrane protein that controls the transport of ions across the outer mitochondrial membrane. Despite the determination of VDAC solution and diffraction structures, a structural basis for the mechanism of its function is not yet fully understood. Biophysical studies suggest VDAC requires a lipid bilayer to achieve full function, motivating the need for atomic resolution structural information of VDAC in a membrane environment. Here we report an essential step toward that goal: extensive assignments of backbone and side chain resonances for VDAC in DMPC lipid bilayers via magic angle spinning nuclear magnetic resonance (MAS NMR). VDAC reconstituted into DMPC lipid bilayers spontaneously forms 2-dimensional lipid crystals, showing remarkable spectral resolution (0.5–0.3 ppm for 13C line width and less than 0.5 ppm 15N line widths at 750 MHz). In addition to the benefits of working in a lipid bilayer, several distinct advantages are observed with the lipid crystalline preparation. First, the strong signals and sharp line widths facilitated extensive NMR resonance assignments for an integral membrane β-barrel protein in lipid bilayers by MAS NMR. Second, a large number of residues in loop regions were readily observed and assigned, which can be challenging in detergent-solubilized membrane proteins where loop regions are often not detected due to line broadening from conformational exchange. Third, complete backbone and side chain chemical shift assignments could be obtained for the first 25 residues, which comprise the functionally important N-terminus. The reported assignments allow us to compare predicted torsion angles for VDAC prepared in DMPC 2D lipid crystals, DMPC liposomes, and LDAO-solubilized samples to address the possible effects of the membrane mimetic environment on the conformation of the protein. Concluding, we discuss the strengths and weaknesses of the reported

  8. Lipid bilayer-bound conformation of an integral membrane beta barrel protein by multidimensional MAS NMR.

    PubMed

    Eddy, Matthew T; Su, Yongchao; Silvers, Robert; Andreas, Loren; Clark, Lindsay; Wagner, Gerhard; Pintacuda, Guido; Emsley, Lyndon; Griffin, Robert G

    2015-04-01

    The human voltage dependent anion channel 1 (VDAC) is a 32 kDa β-barrel integral membrane protein that controls the transport of ions across the outer mitochondrial membrane. Despite the determination of VDAC solution and diffraction structures, a structural basis for the mechanism of its function is not yet fully understood. Biophysical studies suggest VDAC requires a lipid bilayer to achieve full function, motivating the need for atomic resolution structural information of VDAC in a membrane environment. Here we report an essential step toward that goal: extensive assignments of backbone and side chain resonances for VDAC in DMPC lipid bilayers via magic angle spinning nuclear magnetic resonance (MAS NMR). VDAC reconstituted into DMPC lipid bilayers spontaneously forms two-dimensional lipid crystals, showing remarkable spectral resolution (0.5-0.3 ppm for (13)C line widths and <0.5 ppm (15)N line widths at 750 MHz). In addition to the benefits of working in a lipid bilayer, several distinct advantages are observed with the lipid crystalline preparation. First, the strong signals and sharp line widths facilitated extensive NMR resonance assignments for an integral membrane β-barrel protein in lipid bilayers by MAS NMR. Second, a large number of residues in loop regions were readily observed and assigned, which can be challenging in detergent-solubilized membrane proteins where loop regions are often not detected due to line broadening from conformational exchange. Third, complete backbone and side chain chemical shift assignments could be obtained for the first 25 residues, which comprise the functionally important N-terminus. The reported assignments allow us to compare predicted torsion angles for VDAC prepared in DMPC 2D lipid crystals, DMPC liposomes, and LDAO-solubilized samples to address the possible effects of the membrane mimetic environment on the conformation of the protein. Concluding, we discuss the strengths and weaknesses of the reported

  9. WESTCARB Carbon Atlas

    DOE Data Explorer

    The West Coast Regional Carbon Sequestration Partnership (known as WESTCARB) was established in Fall 2003. It is one of seven research partnerships co-funded by DOE to characterize regional carbon sequestration opportunities and conduct pilot-scale validation tests. The California Energy Commission manages WESTCARB and is a major co-funder. WESTCARB is characterizing the extent and capacity of geologic formations capable of storing CO2, known as sinks. Results are entered into a geographic information system (GIS) database, along with the location of major CO2-emitting point sources in each of the six WESTCARB states, enabling researchers and the public to gauge the proximity of candidate CO2 storage sites to emission sources and the feasibility of linking them via pipelines. Specifically, the WESTCARB GIS database (also known as the carbon atlas) stores layers of geologic information about potential underground storage sites, such as porosity and nearby fault-lines and aquifers. Researchers use these data, along with interpreted geophysical data and available oil and gas well logs to estimate the region's potential geologic storage capacity. The database also depicts existing pipeline routes and rights-of-way and lands that could be off-limits, which can aid the development of a regional carbon management strategy. The WESTCARB Carbon Atlas, which is accessible to the public, provides a resource for public discourse on practical solutions for regional CO2 management. A key WESTCARB partner, the Utah Automated Geographic Reference Center, has developed data serving procedures to enable the WESTCARB Carbon Atlas to be integrated with those from other regional partnerships, thereby supporting the U.S. Department of Energy's national carbon atlas, NATCARB

  10. Topographical atlas sheets

    USGS Publications Warehouse

    Wheeler, George Montague

    1877-01-01

    The following topographical atlas maps, published during the year, accompany the copies of Appendix N.N. of the Annual Report of the Chief of Engineers for 1877, beinig Annual Report of Lieut. Geo. M. Wheeler, Corps of Engineers, in charge of U. S. Geographical Surveys, are in continuation of the series ninety-five in number, on a scale of 1 inch to 8 miles, embracing the territory of the United States lying west of the 100th meridian.

  11. L1 track triggers for ATLAS in the HL-LHC

    DOE PAGES

    Lipeles, E.

    2012-01-01

    The HL-LHC, the planned high luminosity upgrade for the LHC, will increase the collision rate in the ATLAS detector approximately a factor of 5 beyond the luminosity for which the detectors were designed, while also increasing the number of pile-up collisions in each event by a similar factor. This means that the level-1 trigger must achieve a higher rejection factor in a more difficult environment. This presentation discusses the challenges that arise in this environment and strategies being considered by ATLAS to include information from the tracking systems in the level-1 decision. The main challenges involve reducing the data volumemore » exported from the tracking system for which two options are under consideration: a region of interest based system and an intelligent sensor method which filters on hits likely to come from higher transverse momentum tracks.« less

  12. Health physics activities in support of the thermal shield removal/disposal and core support barrel repair at the St. Lucie Nuclear Power Plant.

    PubMed

    Maisler, J J; Buchanan, H F

    1988-02-01

    The health physics activities related to the removal and disposal of a thermal shield at a nuclear power plant and subsequent repairs to the core support barrel required increased planning relative to a normal refueling/maintenance outage. The repair of the core support barrel was a "first" in the nuclear power industry. Pre-job planning was of great concern because of extremely high radiation levels associated with the irradiated stainless steel thermal shield and core support barrel. ALARA techniques used in the preparation of the thermal shield for removal and shipment to the disposal site are discussed.

  13. TRTViewer: The ATLAS TRT detector monitoring and diagnosticstool

    NASA Astrophysics Data System (ADS)

    Smirnov, S. Yu.; Atlas Collaboration

    2013-04-01

    The transition radiation tracker (TRT) is the outermost of the three sub-systems of the ATLAS inner detector at the Large Hadron Collider (LHC) at CERN. It is designed to combine the drift tube tracker with the transition radiation detector, providing an important contribution to the charged particles precise momentum measurement and particle (mainly electron) identification. The TRT consists of a barrel section at small pseudorapidity (η) and two separate end-cap partitions at large η. The detector performance and its operational conditions were permanently monitored during all commissioning and data-taking stages using various software tools, one of which - TRTViewer - is described in the present paper. The TRTViewer is the dedicated program for monitoring the TRT raw data quality and detector performance at different hardware levels: individual straws, readout chips and electronic boards. The data analysis results can be presented on the event-by-event basis or in the form of color maps representing the operation parameters (efficiencies, timing, occupancy, etc.) according to the real geometrical position of the detector hardware elements. The paper describes the TRTViewer software package as the event displaying tool, raw data processor and histogram and operation parameters presenter, which works with the different sources of input information: raw data files, online monitoring histograms, offline analysis histograms and TRT DAQ Configuration database. The package proved to be one of the main instruments for the fast and effective TRT diagnostics during debugging and operation periods.

  14. The GLAS Standard Data Products Specification-Level 1, Version 9

    NASA Technical Reports Server (NTRS)

    Lee, Jeffrey E.

    2013-01-01

    The Geoscience Laser Altimeter System (GLAS) is the primary instrument for the ICESat (Ice, Cloud and Land Elevation Satellite) laser altimetry mission. ICESat was the benchmark Earth Observing System (EOS) mission for measuring ice sheet mass balance, cloud and aerosol heights, as well as land topography and vegetation characteristics. From 2003 to 2009, the ICESat mission provided multi-year elevation data needed to determine ice sheet mass balance as well as cloud property information, especially for stratospheric clouds common over polar areas. It also provided topography and vegetation data around the globe, in addition to the polar-specific coverage over the Greenland and Antarctic ice sheets.This document defines the Level-1 GLAS standard data products. This document addresses the data flow, interfaces, record and data formats associated with the GLAS Level 1 standard data products. GLAS Level 1 standard data products are composed of Level 1A and Level 1B data products. The term standard data products refers to those EOS instrument data that are routinely generated for public distribution. The National Snow and Ice Data Center (NSDIC) distribute these products. Each data product has a unique Product Identification code assigned by the Senior Project Scientist. GLAS Level 1A and Level 1B Data Products are composed from those Level 0 data that have been reformatted or transformed to corrected and calibrated data in physical units at the full instrument rate and resolution.

  15. ATLAS: Forecasting Falling Rocks

    NASA Astrophysics Data System (ADS)

    Heinze, Aren; Tonry, John L.; Denneau, Larry; Stalder, Brian; Sherstyuk, Andrei

    2016-10-01

    The Asteroid Terrestrial-impact Last Alert System (ATLAS) is a new asteroid survey aimed at detecting small (10-100 meter) asteroids inbound for impact with Earth. Relative to the larger objects targeted by most surveys, these small asteroids pose very different threats to our planet. Large asteroids can be seen at great distances and measured over many years, resulting in precise orbits that enable long-term impact predictions. If an impact were predicted, a costly deflection mission would be warranted to avert global catastrophe -- but a large asteroid impact is very unlikely in the next century. By contrast, impacts from small asteroids are inevitable. Such objects can be detected only during close encounters with Earth -- encounters too brief to yield long-term predictions. Only a few days' warning could be expected for an impactor in the 10-100 meter range, but fortunately the impact of such an asteroid would cause only regional damage. As in the case of a hurricane, a quixotic attempt to deflect or destroy it would be more expensive than the damage from its impact. A better response is to save human lives by evacuating the impact zone, and then rebuild. Only a few days warning are needed for this purpose, and ATLAS is unique among asteroid surveys in being optimized to provide it. While the optimization has many facets, the most important is rapidly surveying the entire accessible sky. A small asteroid could come from any direction and go from invisibility to impact in less than a week: ATLAS must look everywhere, all the time. Sky coverage is more important than exquisite sensitivity to faint objects, because asteroids inbound for impact will eventually become quite bright. This makes ATLAS complementary to other surveys, which scan the sky at a more leisurely pace but are able to detect asteroids at greater distances. We report on ATLAS' first year of survey operations, including the maturing of robotic observation and detection strategies, and asteroid and

  16. Tactile Experience Induces c-fos Expression in Rat Barrel Cortex

    PubMed Central

    Filipkowski, Robert K.; Rydz, Marek; Berdel, Bozena; Morys, Janusz; Kaczmarek, Leszek

    2000-01-01

    Understanding gene expression that is responsive to sensory stimulation is central to elucidate molecular mechanisms underlying neuronal plasticity. In this study we demonstrate two new methods of stimulating whiskers that provide major sensory input to rat neocortex. In the first paradigm, animals were placed on the top of a cylinder and their vibrissae were brushed by hand. In the second paradigm, animals were placed for a brief period of time into a new, wired cage resulting in vibrissae stimulation when they explored the new environment. Both approaches induced c-Fos expression in barrel cortex corresponding to the stimulated vibrissae, especially in layer IV. Layers II/III and V/VI also showed c-Fos induction, but there were no detectable changes in layer VIb. The majority of c-Fos-expressing cells are probably not inhibitory neurons, because they do not show parvalbumin staining. Both paradigms, in contrast to the previous methods, are simple to use and do not require anesthesia, restraint of animals, or elaborate experimental setups. PMID:10753978

  17. Oral creatine supplementation on performance of Quarter Horses used in barrel racing.

    PubMed

    Teixeira, F A; Araújo, A L; Ramalho, L O; Adamkosky, M S; Lacerda, T F; Coelho, C S

    2016-06-01

    The aim of this study was to evaluate the effects of oral creatine supplementation on the athletic performance of equines used for barrel racing. Ten healthy Quarter Horses, or Quarter Horse crossbred, weighing 429.7 ± 25.3 kg and with mean age of 3.8 ± 1.2 years, were used. Animals were evaluated in four different moments (M1, M2, M3, M4), and between M3 and M4, they were supplemented with 28 g of creatine/100 kg of body weight, orally, for 45 days. Although significant alterations for LDH activity, plasma glucose and packed cell volume were observed, it was possible to conclude that there was no improvement in the athletic performance for the animals used on the experiment, as there were no changes in time scores, heart rate and plasma lactate, variables considered as performance indicators, before and after supplementation.

  18. Coordinated Plasticity between Barrel Cortical Glutamatergic and GABAergic Neurons during Associative Memory

    PubMed Central

    Yan, Fenxia; Gao, Zilong; Chen, Pin; Huang, Li; Wang, Dangui; Chen, Na; Wu, Ruixiang; Feng, Jing; Cui, Shan; Lu, Wei

    2016-01-01

    Neural plasticity is associated with memory formation. The coordinated refinement and interaction between cortical glutamatergic and GABAergic neurons remain elusive in associative memory, which we examine in a mouse model of associative learning. In the mice that show odorant-induced whisker motion after pairing whisker and odor stimulations, the barrel cortical glutamatergic and GABAergic neurons are recruited to encode the newly learnt odor signal alongside the innate whisker signal. These glutamatergic neurons are functionally upregulated, and GABAergic neurons are refined in a homeostatic manner. The mutual innervations between these glutamatergic and GABAergic neurons are upregulated. The analyses by high throughput sequencing show that certain microRNAs related to regulating synapses and neurons are involved in this cross-modal reflex. Thus, the coactivation of the sensory cortices through epigenetic processes recruits their glutamatergic and GABAergic neurons to be the associative memory cells as well as drive their coordinated refinements toward the optimal state for the storage of the associated signals. PMID:28070425

  19. Variable Temporal Integration of Stimulus Patterns in the Mouse Barrel Cortex.

    PubMed

    Pitas, Anna; Albarracín, Ana Lía; Molano-Mazón, Manuel; Maravall, Miguel

    2016-02-01

    Making sense of the world requires distinguishing temporal patterns and sequences lasting hundreds of milliseconds or more. How cortical circuits integrate over time to represent specific sensory sequences remains elusive. Here we assessed whether neurons in the barrel cortex (BC) integrate information about temporal patterns of whisker movements. We performed cell-attached recordings in anesthetized mice while delivering whisker deflections at variable intervals and compared the information carried by neurons about the latest interstimulus interval (reflecting sensitivity to instantaneous frequency) and earlier intervals (reflecting integration over timescales up to several hundred milliseconds). Neurons carried more information about the latest interval than earlier ones. The amount of temporal integration varied with neuronal responsiveness and with the cortical depth of the recording site, that is, with laminar location. A subset of neurons in the upper layers displayed the strongest integration. Highly responsive neurons in the deeper layers encoded the latest interval but integrated particularly weakly. Under these conditions, BC neurons act primarily as encoders of current stimulation parameters; however, our results suggest that temporal integration over hundreds of milliseconds can emerge in some neurons within BC.

  20. Barrel time-of-flight detector for the PANDA experiment at FAIR

    NASA Astrophysics Data System (ADS)

    Gruber, L.; Brunner, S. E.; Marton, J.; Orth, H.; Suzuki, K.

    2016-07-01

    The barrel time-of-flight detector for the PANDA experiment at FAIR is foreseen as a Scintillator Tile (SciTil) Hodoscope based on several thousand small plastic scintillator tiles read-out with directly attached Silicon Photomultipliers (SiPMs). The main tasks of the system are an accurate determination of the time origin of particle tracks to avoid event mixing at high collision rates, relative time-of-flight measurements as well as particle identification in the low momentum regime. The main requirements are the use of a minimum material amount and a time resolution of σ < 100 ps. We have performed extensive optimization studies and prototype tests to prove the feasibility of the SciTil design and finalize the R&D phase. In a 2.7 GeV/c proton beam at Forschungszentrum Jülich a time resolution of about 80 ps has been achieved using SiPMs from KETEK and Hamamatsu with an active area of 3 × 3mm2. Employing the Digital Photon Counter from Philips a time resolution of about 30 ps has been reached.

  1. Detergent-associated Solution Conformations of Helical and Beta-barrel Membrane Proteins

    SciTech Connect

    Mo, Yiming; Lee, Byung-Kwon; Ankner, John Francis; Becker, Jeffrey Marvin; Heller, William T

    2008-01-01

    Membrane proteins present major challenges for structural biology. In particular, the production of suitable crystals for high-resolution structural determination continues to be a significant roadblock for developing an atomic-level understanding of these vital cellular systems. The use of detergents for extracting membrane proteins from the native membrane for either crystallization or reconstitution into model lipid membranes for further study is assumed to leave the protein with the proper fold with a belt of detergent encompassing the membrane-spanning segments of the structure. Small-angle X-ray scattering was used to probe the detergent-associated solution conformations of three membrane proteins, namely bacteriorhodopsin (BR), the Ste2p G-protein coupled receptor from Saccharomyces cerevisiae, and the Escherichia coli porin OmpF. The results demonstrate that, contrary to the traditional model of a detergent-associated membrane protein, the helical proteins BR and Ste2p are not in the expected, compact conformation and associated with detergent micelles, while the ?-barrel OmpF is indeed embedded in a disk-like micelle in a properly folded state. The comparison provided by the BR and Ste2p, both members of the 7TM family of helical membrane proteins, further suggests that the interhelical interactions between the transmembrane helices of the two proteins differ, such that BR, like other rhodopsins, can properly refold to crystallize, while Ste2p continues to prove resistant to crystallization from an initially detergent-associated state.

  2. The impact of development and sensory deprivation on dendritic protrusions in the mouse barrel cortex.

    PubMed

    Chen, Chia-Chien; Bajnath, Adesh; Brumberg, Joshua C

    2015-06-01

    Dendritic protrusions (spines and filopodia) are structural indicators of synapses that have been linked to neuronal learning and memory through their morphological alterations induced by development and experienced-dependent activities. Although previous studies have demonstrated that depriving sensory experience leads to structural changes in neocortical organization, the more subtle effects on dendritic protrusions remain unclear, mostly due to focus on only one specific cell type and/or age of manipulation. Here, we show that sensory deprivation induced by whisker trimming influences the dendritic protrusions of basilar dendrites located in thalamocortical recipient lamina (IV and VI) of the mouse barrel cortex in a layer-specific manner. Following 1 month of whisker trimming after birth, the density of dendritic protrusions increased in layer IV, but decreased in layer VI. Whisker regrowth for 1 month returned protrusion densities to comparable level of age-matched controls in layer VI, but not in layer IV. In adults, chronic sensory deprivation led to an increase in protrusion densities in layer IV, but not in layer VI. In addition, chronic pharmacological blockade of N-methyl-d-aspartate receptors (NMDARs) increased protrusion density in both layers IV and VI, which returned to the control level after 1 month of drug withdrawal. Our data reveal that different cortical layers respond to chronic sensory deprivation in different ways, with more pronounced effects during developmental critical periods than adulthood. We also show that chronically blocking NMDARs activity during developmental critical period also influences the protrusion density and morphology in the cerebral cortex.

  3. A lipoprotein/β-barrel complex monitors lipopolysaccharide integrity transducing information across the outer membrane

    PubMed Central

    Konovalova, Anna; Mitchell, Angela M; Silhavy, Thomas J

    2016-01-01

    Lipoprotein RcsF is the OM component of the Rcs envelope stress response. RcsF exists in complexes with β-barrel proteins (OMPs) allowing it to adopt a transmembrane orientation with a lipidated N-terminal domain on the cell surface and a periplasmic C-terminal domain. Here we report that mutations that remove BamE or alter a residue in the RcsF trans-lumen domain specifically prevent assembly of the interlocked complexes without inactivating either RcsF or the OMP. Using these mutations we demonstrate that these RcsF/OMP complexes are required for sensing OM outer leaflet stress. Using mutations that alter the positively charged surface-exposed domain, we show that RcsF monitors lateral interactions between lipopolysaccharide (LPS) molecules. When these interactions are disrupted by cationic antimicrobial peptides, or by the loss of negatively charged phosphate groups on the LPS molecule, this information is transduced to the RcsF C-terminal signaling domain located in the periplasm to activate the stress response. DOI: http://dx.doi.org/10.7554/eLife.15276.001 PMID:27282389

  4. Informational basis of sensory adaptation: entropy and single-spike efficiency in rat barrel cortex.

    PubMed

    Adibi, Mehdi; Clifford, Colin W G; Arabzadeh, Ehsan

    2013-09-11

    We showed recently that exposure to whisker vibrations enhances coding efficiency in rat barrel cortex despite increasing correlations in variability (Adibi et al., 2013). Here, to understand how adaptation achieves this improvement in sensory representation, we decomposed the stimulus information carried in neuronal population activity into its fundamental components in the framework of information theory. In the context of sensory coding, these components are the entropy of the responses across the entire stimulus set (response entropy) and the entropy of the responses conditional on the stimulus (conditional response entropy). We found that adaptation decreased response entropy and conditional response entropy at both the level of single neurons and the pooled activity of neuronal populations. However, the net effect of adaptation was to increase the mutual information because the drop in the conditional entropy outweighed the drop in the response entropy. The information transmitted by a single spike also increased under adaptation. As population size increased, the information content of individual spikes declined but the relative improvement attributable to adaptation was maintained.

  5. A dynamic model for generating actuator specifications for small arms barrel active stabilization

    NASA Astrophysics Data System (ADS)

    Pathak, Anupam; Brei, Diann; Luntz, Jonathan; Lavigna, Chris

    2006-03-01

    Due to stresses encountered in combat, it is known that soldier marksmanship noticeably decreases regardless of prior training. Active stabilization systems in small arms have potential to address this problem to increase soldier survivability and mission effectiveness. The key to success is proper actuator design, but this is highly dependent on proper specification which is challenging due to the human/weapon interaction. This paper presents a generic analytical dynamic model which is capable of defining the necessary actuation specifications for a wide range of small arms platforms. The model is unique because it captures the human interface--shoulder and arm--that introduces the jitter disturbance in addition to the geometry, inertial properties and active stabilization stiffness of the small arms platform. Because no data to date is available for actual shooter-induced disturbance in field conditions, a method is given using the model to back-solve from measured shooting range variability data the disturbance amplitude information relative to the input source (arm or shoulder). As examples of the applicability of the model to various small arms systems, two different weapon systems were investigated: the M24 sniper weapon and the M16 assault rifle. In both cases, model based simulations provided valuable insight into impact on the actuation specifications (force, displacement, phase, frequency) due to the interplay of the human-weapon-active stabilization interface including the effect of shooter-disturbance frequency, disturbance location (shoulder vs. arm), and system parameters (stiffness, barrel rotation).

  6. Whisker row deprivation affects the flow of sensory information through rat barrel cortex.

    PubMed

    Jacob, Vincent; Mitani, Akinori; Toyoizumi, Taro; Fox, Kevin

    2017-01-01

    Whisker trimming causes substantial reorganization of neuronal response properties in barrel cortex. However, little is known about experience-dependent rerouting of sensory processing following sensory deprivation. To address this, we performed in vivo intracellular recordings from layers 2/3 (L2/3), layer 4 (L4), layer 5 regular-spiking (L5RS), and L5 intrinsically bursting (L5IB) neurons and measured their multiwhisker receptive field at the level of spiking activity, membrane potential, and synaptic conductance before and after sensory deprivation. We used Chernoff information to quantify the "sensory information" contained in the firing patterns of cells in response to spared and deprived whisker stimulation. In the control condition, information for flanking-row and same-row whiskers decreased in the order L4, L2/3, L5IB, L5RS. However, after whisker-row deprivation, spared flanking-row whisker information was reordered to L4, L5RS, L5IB, L2/3. Sensory information from the trimmed whiskers was reduced and delayed in L2/3 and L5IB neurons, whereas sensory information from spared whiskers was increased and advanced in L4 and L5RS neurons. Sensory information from spared whiskers was increased in L5IB neurons without a latency change. L5RS cells exhibited the largest changes in sensory information content through an atypical plasticity combining a significant decrease in spontaneous activity and an increase in a short-latency excitatory conductance.

  7. Baryon spectroscopy: Recent results from the Crystal Barrel/TAPS experiment at ELSA

    SciTech Connect

    Thoma, U.

    2010-08-05

    To understand the spectrum and the properties of baryon resonances, the CBELSA/TAPS experiment at ELSA investigates the photoproduction of single- and multi-meson final states off the nucleon. In the latter final states baryon cascades via Dp and Dh and also via higher mass baryon resonances are clearly observed. A partial wave analysis based on single and double meson photoproduction data as well as data from other reactions allows a first determination of resonance properties including partial decay widths of various N* and {Delta}* states. Those include also the decays into the different p{pi}{sup 0{pi}0} and p{pi}{sup 0{eta}} decay channels resulting partly in unexpected results. Recently not only single but also double polarisation experiments have been performed, which are absolutelly necessary to resolve ambiguities in the partial wave analyses (PWA) used to extract the resonances from the data; without the measurement of polarisation observables a model-independent PWA will not be possible. Polarisation observables have been investigated using linearly, circularly polarized or unpolarized photons impinging on an longitudinally polarized or unpolarized target. Given the angular coverage of the Crystal-Barrel/TAPS experiment this data cover almost the full angular range and phase space. This data will provide key information for the partial wave analyses and brings us one step closer towards the needed complete experiment.

  8. Man-In-The-Barrel. A Case of Cervical Spinal Cord Infarction and Review of the Literature

    PubMed Central

    Antelo, María José García; Facal, Teresa Lema; Sánchez, Tamara Pablos; Facal, María Soledad López; Nazabal, Eduardo Rubio

    2013-01-01

    Introduction: Man-in-the-barrel syndrome was initially observed in patients with signs of serious cerebral hypoperfusion, in the border zone of the anterior and medial cerebral artery, but other causes were communicated later. Methods: a healthy 43-year-old woman who showed intense cervical pain, irradiating over both shoulders and arms. Physical examination on admission highlighted notable brachial diparesis, tacto-algesic hypoesthesia of both arms and sensory level C4-D9. Results: cervical Magnetic Resonance Imaging (MRI) on admission revealed a hyperintense intramedullar lesion at C3-C7 level, due to a cervical cord infarction. Conclusions: our case reveals that conventional neurological consideration about the specific anatomical location of man-in-the-barrel syndrome in the brain should be extended to other locations such as the cervical column and not only the brain area. PMID:23407685

  9. Methods for Studying Interactions of Detergents and Lipids withα-Helical and β-Barrel Integral Membrane Proteins

    PubMed Central

    Hasan, S. Saif; Baniulis, Danas; Yamashita, Eiki; Zhalnina, Mariya V.; Zakharov, Stanislav D.; Stofleth, Jason T.; Cramer, William A.

    2014-01-01

    Methods for studying interactions of protein with lipids and detergents are described for representatives of two major classes of membrane proteins: (1) the α-helical heterooligomeric integral cytochrome b6f complex of oxygenic photosynthesis from cyanobacteria, and (2) the outer membrane β-barrel proteins BtuB and OmpF from Gram-negative Escherichia coli bacteria. Details are presented on the use of detergents for purification and crystallization of the b6f complex as well as a method for lipid exchange. The positions of detergent and lipid molecules, which define eight potential lipid-binding sites in the b6f complex, are described. Differences in detergent strategies for isolation and crystallization of β-barrel proteins relative to those for oligomeric helical membrane proteins are discussed, and purification and assessment of protein quality by circular dichroism (CD) is presented. PMID:24510648

  10. Automated Loads Analysis System (ATLAS)

    NASA Technical Reports Server (NTRS)

    Gardner, Stephen; Frere, Scot; O’Reilly, Patrick

    2013-01-01

    ATLAS is a generalized solution that can be used for launch vehicles. ATLAS is used to produce modal transient analysis and quasi-static analysis results (i.e., accelerations, displacements, and forces) for the payload math models on a specific Shuttle Transport System (STS) flight using the shuttle math model and associated forcing functions. This innovation solves the problem of coupling of payload math models into a shuttle math model. It performs a transient loads analysis simulating liftoff, landing, and all flight events between liftoff and landing. ATLAS utilizes efficient and numerically stable algorithms available in MSC/NASTRAN.

  11. ATLAS 1: Encountering Planet Earth

    NASA Technical Reports Server (NTRS)

    Shea, Charlotte; Mcmahan, Tracy; Accardi, Denise; Tygielski, Michele; Mikatarian, Jeff; Wiginton, Margaret (Editor)

    1984-01-01

    Several NASA science programs examine the dynamic balance of sunlight, atmosphere, water, land, and life that governs Earth's environment. Among these is a series of Space Shuttle-Spacelab missions, named the Atmospheric Laboratory for Applications and Science (ATLAS). During the ATLAS missions, international teams of scientists representing many disciplines combine their expertise to seek answers to complex questions about the atmospheric and solar conditions that sustain life on Earth. The ATLAS program specifically investigates how Earth's middle atmosphere and upper atmospheres and climate are affected by both the Sun and by products of industrial and agricultural activities on Earth.

  12. The PeptideAtlas Project.

    PubMed

    Deutsch, Eric W

    2010-01-01

    PeptideAtlas is a multi-species compendium of peptides observed with tandem mass spectrometry methods. Raw mass spectrometer output files are collected from the community and reprocessed through a uniform analysis and validation pipeline that continues to advance. The results are loaded into a database and the information derived from the raw data is returned to the community via several web-based data exploration tools. The PeptideAtlas resource is useful for experiment planning, improving genome annotation, and other data mining projects. PeptideAtlas has become especially useful for planning targeted proteomics experiments.

  13. Total Maxillary Reconstruction Using a Double-Barreled and Double Skin Paddle Fibular Flap after Total Maxillectomy

    PubMed Central

    Sanchez, Gerardo; Lopez, Jaime; Perez, Adrian; Naal, Norberto

    2013-01-01

    Chondroblastomas are rare entities accounting for approximately 1% of all primary bone tumors. We describe a case of a 7-year-old girl with a giant chondroblastoma of the maxilla, treated with bilateral class III maxillectomy and reconstruction with a double-barreled and double skin paddle fibular free flap. We show evidence of an excellent aesthetic outcome at 6 months' follow up with no evidence of tumor recurrence. PMID:24286054

  14. Total maxillary reconstruction using a double-barreled and double skin paddle fibular flap after total maxillectomy.

    PubMed

    de la Parra, Miguel; Sanchez, Gerardo; Lopez, Jaime; Perez, Adrian; Naal, Norberto

    2013-11-01

    Chondroblastomas are rare entities accounting for approximately 1% of all primary bone tumors. We describe a case of a 7-year-old girl with a giant chondroblastoma of the maxilla, treated with bilateral class III maxillectomy and reconstruction with a double-barreled and double skin paddle fibular free flap. We show evidence of an excellent aesthetic outcome at 6 months' follow up with no evidence of tumor recurrence.

  15. Computerized Anatomy Atlas Of The Human Brain

    NASA Astrophysics Data System (ADS)

    Adair, Taylor; Bajcsy, Ruzena; Karp, Peter; Stein, Alan

    1981-10-01

    A software for developing, editing and displaying a 3-D computerized anatomic atlas of a human brain is described. The objective of this atlas is to serve as a reference in identifying various structures in CT scans.

  16. Methodology of Lithuanian climate atlas mapping

    NASA Astrophysics Data System (ADS)

    Valiukas, Donatas; Galvonaitė, Audronė; Česnulevičius, Algimantas

    2015-06-01

    Climate atlases summarize large sets of quantitative and qualitative data and are results of complex analytical cartographic work. These special geographical publications summarize long term meteorological observations, provide maps and figures which characterise different climate elements. Visual information is supplemented with explanatory texts. A lot of information on short and long term changes of climate elements were provided in published Lithuanian atlases (Atlas of Lithuanian SDR, 1981; Climate Atlas of Lithuania, 2013), as well as in prepared but unpublished Lithuanian Atlas (1989) and in upcoming new national atlas publications (National Atlas of Lithuania. 1st part, 2014). Climate atlases has to be constantly updated to be relevant and to describe current climate conditions. Comprehensive indicators of Lithuanian climate are provided in different cartographic publications. Different time periods, various data sets and diverse cartographic data analysis tools and visualisation methods were used in these different publications.

  17. Fear learning increases the number of polyribosomes associated with excitatory and inhibitory synapses in the barrel cortex.

    PubMed

    Jasinska, Malgorzata; Siucinska, Ewa; Jasek, Ewa; Litwin, Jan A; Pyza, Elzbieta; Kossut, Malgorzata

    2013-01-01

    Associative fear learning, resulting from whisker stimulation paired with application of a mild electric shock to the tail in a classical conditioning paradigm, changes the motor behavior of mice and modifies the cortical functional representation of sensory receptors involved in the conditioning. It also induces the formation of new inhibitory synapses on double-synapse spines of the cognate barrel hollows. We studied density and distribution of polyribosomes, the putative structural markers of enhanced synaptic activation, following conditioning. By analyzing serial sections of the barrel cortex by electron microscopy and stereology, we found that the density of polyribosomes was significantly increased in dendrites of the barrel activated during conditioning. The results revealed fear learning-induced increase in the density of polyribosomes associated with both excitatory and inhibitory synapses located on dendritic spines (in both single- and double-synapse spines) and only with the inhibitory synapses located on dendritic shafts. This effect was accompanied by a significant increase in the postsynaptic density area of the excitatory synapses on single-synapse spines and of the inhibitory synapses on double-synapse spines containing polyribosomes. The present results show that associative fear learning not only induces inhibitory synaptogenesis, as demonstrated in the previous studies, but also stimulates local protein synthesis and produces modifications of the synapses that indicate their potentiation.

  18. Effects of long-term sensory deprivation on asymmetric synapses in the whisker barrel field of the adult rat.

    PubMed

    Machín, Raquel; Pérez-Cejuela, César G; Bjugn, Roger; Avendaño, Carlos

    2006-08-30

    Whisker trimming deprives the cortical barrel field from the patterned sensory input that derives from active touch but leaves passive tactile signals unaltered. We have studied in the rat barrel field, by stereological procedures, the effects of a sustained period of unilateral deprivation by whisker clipping during adolescence and early adulthood on (1) the surface density (SV) of asymmetric synapses, as determined from measuring the presynaptic membrane specializations, and (2) the numerical density of asymmetric synaptic profiles (NA), classified according to their postsynaptic target and their apparent curvature. Compared to control rats, the procedure did not change the overall volume of the region, the volume fraction occupied by each cortical layer, or the volume fraction occupied by unmyelinated axons and boutons. However, the deprived barrel cortex displayed an increase in SV in layers I and II, and an increase in NA in layer I and in the cortex as a whole, mainly due to an increase in profiles with a convex shape. Layer IV was the least affected by the deprivation. These results point to a net increase, rather than a decrease, of excitatory synapses in the deprived cortex, which could result from a deprivation-induced decrease in the rate of normal synapse loss. This effect occurs specifically in superficial layers, more involved in intracortical and cortico-cortical, rather than thalamo-cortical, processing.

  19. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.

    PubMed

    Waldispühl, J; Berger, Bonnie; Clote, Peter; Steyaert, Jean-Marc

    2006-07-01

    Transmembrane beta-barrel (TMB) proteins are embedded in the outer membrane of Gram-negative bacteria, mitochondria and chloroplasts. The cellular location and functional diversity of beta-barrel outer membrane proteins makes them an important protein class. At the present time, very few non-homologous TMB structures have been determined by X-ray diffraction because of the experimental difficulty encountered in crystallizing transmembrane (TM) proteins. The transFold web server uses pairwise inter-strand residue statistical potentials derived from globular (non-outer-membrane) proteins to predict the supersecondary structure of TMB. Unlike all previous approaches, transFold does not use machine learning methods such as hidden Markov models or neural networks; instead, transFold employs multi-tape S-attribute grammars to describe all potential conformations, and then applies dynamic programming to determine the global minimum energy supersecondary structure. The transFold web server not only predicts secondary structure and TMB topology, but is the only method which additionally predicts the side-chain orientation of transmembrane beta-strand residues, inter-strand residue contacts and TM beta-strand inclination with respect to the membrane. The program transFold currently outperforms all other methods for accuracy of beta-barrel structure prediction. Available at http://bioinformatics.bc.edu/clotelab/transFold.

  20. 78 FR 26396 - Proposed Collection; Comments Requested: FBI National Academy Level 1 Evaluation: Student Course...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-06

    ... Proposed Collection; Comments Requested: FBI National Academy Level 1 Evaluation: Student Course Questionnaire and FBI National Academy: General Remarks Questionnaire ACTION: 30-Day Notice. The Department of Justice (DOJ), Federal Bureau of Investigation (FBI), Training Division's Curriculum Management...

  1. 78 FR 13085 - Proposed Collection, Comments Requested: FBI National Academy Level 1 Evaluation: Student Course...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-26

    ... Federal Bureau of Investigation Proposed Collection, Comments Requested: FBI National Academy Level 1 Evaluation: Student Course Questionnaire and FBI National Academy: General Remarks Questionnaire ACTION: 60-day notice. The Department of Justice (DOJ), Federal Bureau of Investigation (FBI), Training...

  2. Ellagitannin content, volatile composition and sensory profile of wines from different countries matured in oak barrels subjected to different toasting methods.

    PubMed

    González-Centeno, M R; Chira, K; Teissedre, P-L

    2016-11-01

    Ellagitannins and aromatic compounds evolution in Cabernet Sauvignon wines macerated in oak barrels for a year was studied. Identical barrels with different toastings (medium toasting, medium toasting with watering, Noisette) were used in French, Italian and USA cellars. Ellagitannins increased by 84-96% with aging time, as did woody volatiles, by 86-91% in French wines and 23-35% in Italian wines, while fruity aroma compounds declined by 50-57% in the French and Italian wines over a 12-months period. Nevertheless, other behaviors and different kinetics rates for these compounds were observed depending on barrel toasting, wine matrix and their interactions. Perceived overall woody intensity was closely related to trans-whiskey lactone, guaiacol and vanillin, whereas astringency and bitterness were significantly linked to ellagitannins (p<0.05). This is the first study that evaluates the toasting effect on wines from different countries matured in the same oak barrels.

  3. Variations in oxygen and ellagitannins, and organoleptic properties of red wine aged in French oak barrels classified by a near infrared system.

    PubMed

    Michel, Julien; Albertin, Warren; Jourdes, Michael; Le Floch, Alexandra; Giordanengo, Thomas; Mourey, Nicolas; Teissedre, Pierre-Louis

    2016-08-01

    During wine aging in barrels, antioxidant molecules from wood, such as ellagitannins, are solubilized and react with wine molecules and oxygen. However, their concentrations are highly variable. Oxygen is an important factor, as it plays a role in wine parameters and organoleptic perceptions. Five barrel modalities were used; three polyphenol indices (IP), classified using the NIRS procedure, and three grain qualities. Barrels were equipped with windows to measure the oxygen using luminescence technology. The ellagitannin concentrations in the wine and its organoleptic properties were monitored. Oxygen concentrations decreased quickly during the first 8days of aging and this phenomenon was significantly more marked in barrels with a higher IP and medium grain. The ellagitannin concentrations were believed to be correlated with wood classification and oxygen consumption. Furthermore, the organoleptic properties were significantly impacted, as the wine with the lowest ellagitannin level was described as less astringent, bitter, woody, and smoky/toasty.

  4. MODIS technical report series. Volume 3: MODIS airborne simulator level 1B data user's guide

    NASA Technical Reports Server (NTRS)

    Gumley, Liam E.; Hubanks, Paul A.; Masuoka, Edward J.

    1994-01-01

    The purpose of this document is to describe the characteristics of moderate resolution imaging spectroradiometer (MODIS) airborne simulator level 1B data, the calibration and geolocation methods used in processing, the structure and format of the level 1B data files, and methods for accessing the data. The MODIS airborne simulator is a scanning spectrometer which flies on a NASA ER-2 and provides spectral information similar to that which will be provided by the MODIS.

  5. BOREAS RSS-14 Level-1a GOES-8 Visible, IR and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Newcomer, Jeffrey A.; Faysash, David; Cooper, Harry J.; Smith, Eric A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed several GOES-7 and GOES-8 image data sets that covered the BOREAS study region. The level-1a GOES-8 images were created by BORIS personnel from the level-1 images delivered by FSU personnel. The data cover 14-Jul-1995 to 21-Sep-1995 and 12-Feb-1996 to 03-Oct-1996. The data start out as three bands with 8-bit pixel values and end up as five bands with 10-bit pixel values. No major problems with the data have been identified. The differences between the level-1 and level-1a GOES-8 data are the formatting and packaging of the data. The images missing from the temporal series of level-1 GOES-8 images were zero-filled by BORIS staff to create files consistent in size and format. In addition, BORIS staff packaged all the images of a given type from a given day into a single file, removed the header information from the individual level-1 files, and placed it into a single descriptive ASCII header file. The data are contained in binary image format files. Due to the large size of the images, the level-1a GOES-8 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1a GOES-8 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  6. The Resistive Plate Chambers of the ATLAS experiment:. performance studies on Calibration Stream

    NASA Astrophysics Data System (ADS)

    Mazzaferro, Luca

    2012-08-01

    ATLAS (A Toroidal LHC ApparatuS) is one of the four experiments installed on the hadron-hadron collider LHC at CERN. It is a general purpose experiment, with a physics program which spans from the search for the Higgs Boson to the search of physics Beyond the Standard Model (BSM). An integrated luminosity of about 5 fb-1 is expected to be reached by the end of 2011. The Resistive Plate Chambers, installed in the barrel region, are used to provide the first muon level trigger, and cover an area of 16000 m2, readout by about 350000 electronic channels. To ensure optimal trigger performance, the RPC operational parameters like cluster size, efficiency and spatial resolution are constantly monitored. In order to achieve the desired precision, the data used for the analysis are extracted directly from the second level of the trigger, hence assuring very high statistics. This dedicated event stream, called Calibration Stream, is sent automatically to the RPC Calibration Center in Naples. Here the analysis is performed using an automatic tool tightly integrated in the ATLAS GRID environment, the Local Calibration Data Splitter (LCDS), which configures and manages all the operations required by the analysis (e.g. software environment initialization, grid jobs configuration and submission, data saving and retrieval, etc). The monitored RPC operational parameters, the performance analysis and the LCDS will be presented.

  7. Report to users of ATLAS, January 1998

    SciTech Connect

    Ahmad, I.; Hofman, D.

    1998-01-01

    This report is aimed at informing users about the operating schedule, user policies, and recent changes in research capabilities. It covers the following subjects: (1) status of the Argonne Tandem-Linac Accelerator System (ATLAS) accelerator; (2) the move of Gammasphere from LBNL to ANL; (3) commissioning of the CPT mass spectrometer at ATLAS; (4) highlights of recent research at ATLAS; (5) Program Advisory Committee; and (6) ATLAS User Group Executive Committee.

  8. Neonatal atlas construction using sparse representation.

    PubMed

    Shi, Feng; Wang, Li; Wu, Guorong; Li, Gang; Gilmore, John H; Lin, Weili; Shen, Dinggang

    2014-09-01

    Atlas construction generally includes first an image registration step to normalize all images into a common space and then an atlas building step to fuse the information from all the aligned images. Although numerous atlas construction studies have been performed to improve the accuracy of the image registration step, unweighted or simply weighted average is often used in the atlas building step. In this article, we propose a novel patch-based sparse representation method for atlas construction after all images have been registered into the common space. By taking advantage of local sparse representation, more anatomical details can be recovered in the built atlas. To make the anatomical structures spatially smooth in the atlas, the anatomical feature constraints on group structure of representations and also the overlapping of neighboring patches are imposed to ensure the anatomical consistency between neighboring patches. The proposed method has been applied to 73 neonatal MR images with poor spatial resolution and low tissue contrast, for constructing a neonatal brain atlas with sharp anatomical details. Experimental results demonstrate that the proposed method can significantly enhance the quality of the constructed atlas by discovering more anatomical details especially in the highly convoluted cortical regions. The resulting atlas demonstrates superior performance of our atlas when applied to spatially normalizing three different neonatal datasets, compared with other start-of-the-art neonatal brain atlases.

  9. ATLAS Series of Shuttle Missions. Volume 23

    NASA Technical Reports Server (NTRS)

    1996-01-01

    This technical paper contains selected papers from Geophysical Research Letters (Volume 23, Number 17) on ATLAS series of shuttle missions. The ATLAS space shuttle missions were conducted in March 1992, April 1993, and November 1994. This paper discusses solar irradiance, middle atmospheric temperatures, and trace gas concentrations measurements made by the ATLAS payload and companion instruments.

  10. ATLAS liquid argon calorimeter front end electronics

    NASA Astrophysics Data System (ADS)

    Buchanan, N. J.; Chen, L.; Gingrich, D. M.; Liu, S.; Chen, H.; Damazio, D.; Densing, F.; Duffin, S.; Farrell, J.; Kandasamy, S.; Kierstead, J.; Lanni, F.; Lissauer, D.; Ma, H.; Makowiecki, D.; Muller, T.; Radeka, V.; Rescia, S.; Ruggiero, R.; Takai, H.; Wolniewicz, K.; Ghazlane, H.; Hoummada, A.; Hervas, L.; Hott, T.; Wilkens, H. G.; Ban, J.; Boettcher, S.; Brooijmans, G.; Chi, C.-Y.; Caughron, S.; Cooke, M.; Copic, K.; Dannheim, D.; Gara, A.; Haas, A.; Katsanos, I.; Parsons, J. A.; Simion, S.; Sippach, W.; Zhang, L.; Zhou, N.; Eckstein, P.; Kobel, M.; Ladygin, E.; Auge, E.; Bernier, R.; Bouchel, M.; Bozzone, A.; Breton, D.; de la Taille, C.; Falleau, I.; Fournier, D.; Imbert, P.; Martin-Chassard, G.; Perus, A.; Richer, J. P.; Seguin Moreau, N.; Serin, L.; Tocut, V.; Veillet, J.-J.; Zerwas, D.; Colas, J.; Dumont-Dayot, N.; Massol, N.; Perrodo, P.; Perrot, G.; Wingerter-Seez, I.; Escalier, M.; Hubaut, F.; Laforge, B.; LeDortz, O.; Schwemling, Ph; Collot, J.; Dzahini, D.; Gallin-Martel, M.-L.; Martin, P.; Cwienk, W. D.; Fent, J.; Kurchaninov, L.; Citterio, M.; Mazzanti, M.; Tartarelli, F.; Bansal, V.; Boulahouache, C.; Cleland, W.; Liu, B.; McDonald, J.; Paolone, V.; Rabel, J.; Savinov, V.; Zuk, G.; Benslama, K.; Borgeaud, P.; de la Broïse, X.; Delagnes, E.; LeCoguie, A.; Mansoulié, B.; Pascual, J.; Teiger, J.; Dinkespiler, B.; Liu, T.; Stroynowski, R.; Ye, J.; Zarzhitsky, P.; Grahn, K.-J.; Hansson, P.; Lund-Jensen, B.; Chu, M. L.; Lee, S.-C.; Su, D. S.; Teng, P. K.; Braun, H. M.

    2008-09-01

    The ATLAS detector has been designed for operation at CERN's Large Hadron Collider. ATLAS includes a complex system of liquid argon calorimeters. This paper describes the architecture and implementation of the system of custom front end electronics developed for the readout of the ATLAS liquid argon calorimeters.

  11. BioFuels Atlas (Presentation)

    SciTech Connect

    Moriarty, K.

    2011-02-01

    Presentation for biennial merit review of Biofuels Atlas, a first-pass visualization tool that allows users to explore the potential of biomass-to-biofuels conversions at various locations and scales.

  12. A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins.

    PubMed

    Feher, Victoria A; Randall, Arlo; Baldi, Pierre; Bush, Robin M; de la Maza, Luis M; Amaro, Rommie E

    2013-01-01

    Chlamydia trachomatis is the most prevalent cause of bacterial sexually transmitted diseases and the leading cause of preventable blindness worldwide. Global control of Chlamydia will best be achieved with a vaccine, a primary target for which is the major outer membrane protein, MOMP, which comprises ~60% of the outer membrane protein mass of this bacterium. In the absence of experimental structural information on MOMP, three previously published topology models presumed a16-stranded barrel architecture. Here, we use the latest β-barrel prediction algorithms, previous 2D topology modeling results, and comparative modeling methodology to build a 3D model based on the 16-stranded, trimeric assumption. We find that while a 3D MOMP model captures many structural hallmarks of a trimeric 16-stranded β-barrel porin, and is consistent with most of the experimental evidence for MOMP, MOMP residues 320-334 cannot be modeled as β-strands that span the entire membrane, as is consistently observed in published 16-stranded β-barrel crystal structures. Given the ambiguous results for β-strand delineation found in this study, recent publications of membrane β-barrel structures breaking with the canonical rule for an even number of β-strands, findings of β-barrels with strand-exchanged oligomeric conformations, and alternate folds dependent upon the lifecycle of the bacterium, we suggest that although the MOMP porin structure incorporates canonical 16-stranded conformations, it may have novel oligomeric or dynamic structural changes accounting for the discrepancies observed.

  13. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-03-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  14. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-09-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  15. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-10-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  16. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-08-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  17. ATLAS discoveries of optical transients

    NASA Astrophysics Data System (ADS)

    Tonry, J.; Denneau, L.; Stalder, B.; Heinze, A.; Sherstyuk, A.; Rest, A.; Smith, K. W.; Smartt, S. J.

    2016-06-01

    We report the following transients found by the ATLAS survey (see Tonry et al. ATel #8680). ATLAS is a twin 0.5m telescope system on Haleakala and Mauna Loa. The first unit is operational on Haleakala is robotically surveying the sky. Two filters are used, cyan and orange (denoted c and o, all mags in AB system), more information is on http://www.fallingstar.com.

  18. The β-Barrel Outer Membrane Protein Assembly Complex of Neisseria meningitidis▿

    PubMed Central

    Volokhina, Elena B.; Beckers, Frank; Tommassen, Jan; Bos, Martine P.

    2009-01-01

    The evolutionarily conserved protein Omp85 is required for outer membrane protein (OMP) assembly in gram-negative bacteria and in mitochondria. Its Escherichia coli homolog, designated BamA, functions with four accessory lipoproteins, BamB, BamC, BamD, and BamE, together forming the β-barrel assembly machinery (Bam). Here, we addressed the composition of this machinery and the function of its components in Neisseria meningitidis, a model organism for outer membrane biogenesis studies. Analysis of genome sequences revealed homologs of BamC, BamD (previously described as ComL), and BamE and a second BamE homolog, Mlp. No homolog of BamB was found. As in E. coli, ComL/BamD appeared essential for viability and for OMP assembly, and it could not be replaced by its E. coli homolog. BamE was not essential but was found to contribute to the efficiency of OMP assembly and to the maintenance of OM integrity. A bamC mutant showed only marginal OMP assembly defects, but the impossibility of creating a bamC bamE double mutant further indicated the function of BamC in OMP assembly. An mlp mutant was unaffected in OMP assembly. The results of copurification assays demonstrated the association of BamC, ComL, and BamE with Omp85. Semi-native gel electrophoresis identified the RmpM protein as an additional component of the Omp85 complex, which was confirmed in copurification assays. RmpM was not required for OMP folding but stabilized OMP complexes. Thus, the Bam complex in N. meningitidis consists of Omp85/BamA plus RmpM, BamC, ComL/BamD, and BamE, of which ComL/BamD and BamE appear to be the most important accessory components for OMP assembly. PMID:19767435

  19. Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange

    PubMed Central

    Fiore, Cara L.; Labrie, Micheline; Jarett, Jessica K.; Lesser, Michael P.

    2015-01-01

    Compared to our understanding of the taxonomic composition of the symbiotic microbes in marine sponges, the functional diversity of these symbionts is largely unknown. Furthermore, the application of genomic, transcriptomic, and proteomic techniques to functional questions on sponge host-symbiont interactions is in its infancy. In this study, we generated a transcriptome for the host and a metatranscriptome of its microbial symbionts for the giant barrel sponge, Xestospongia muta, from the Caribbean. In combination with a gene-specific approach, our goals were to (1) characterize genetic evidence for nitrogen cycling in X. muta, an important limiting nutrient on coral reefs (2) identify which prokaryotic symbiont lineages are metabolically active and, (3) characterize the metabolic potential of the prokaryotic community. Xestospongia muta expresses genes from multiple nitrogen transformation pathways that when combined with the abundance of this sponge, and previous data on dissolved inorganic nitrogen fluxes, shows that this sponge is an important contributor to nitrogen cycling biogeochemistry on coral reefs. Additionally, we observed significant differences in gene expression of the archaeal amoA gene, which is involved in ammonia oxidation, between coral reef locations consistent with differences in the fluxes of dissolved inorganic nitrogen previously reported. In regards to symbiont metabolic potential, the genes in the biosynthetic pathways of several amino acids were present in the prokaryotic metatranscriptome dataset but in the host-derived transcripts only the catabolic reactions for these amino acids were present. A similar pattern was observed for the B vitamins (riboflavin, biotin, thiamin, cobalamin). These results expand our understanding of biogeochemical cycling in sponges, and the metabolic interchange highlighted here advances the field of symbiont physiology by elucidating specific metabolic pathways where there is high potential for host

  20. Antifungal properties of Japanese cedar essential oil from waste wood chips made from used sake barrels.

    PubMed

    Takao, Yoshifumi; Kuriyama, Isoko; Yamada, Tasuku; Mizoguchi, Haruhiko; Yoshida, Hiromi; Mizushina, Yoshiyuki

    2012-05-01

    In this study, we prepared essential oil (EO) from waste wood chips made from used sake barrels (USBs) of Japanese cedar (i.e., EO-USB) by steam distillation. We found that EO-USB and three commercially purchased EOs derived from xylem tissue of Japanese woods, such as Japanese cedar (Cryptomeria japonica), Japanese cypress (Chamaecyparis obtusa) and false arborvitae (Thujopsis dolabrata), suppressed fungal growth activity against Trichophyton rubrum, which is the cause of tinea disease. The magnitude of the suppressive effects of the EOs ranked as follows: T. dolabrata > USB = C. japonica > C. obtusa. These EOs also inhibited the activity of DNA polymerase in an extract from T. rubrum mycelia with the following ranking: T. dolabrata > USB = C. japonica > C. obtusa. In addition, 50 µg/ml of EO-USB showed antifungal properties, killing T. rubrum mycelia at 27-42˚C in 20 min. By gas chromatography/mass spectrometry analysis, the main sesquiterpenes in EO-USB were δ-cadinene (25.94%) and epi-cubenol (11.55%), and the composition of EO-USB was approximately the same as that of EO-C. japonica. Three prepared sesquiterpenes, δ-cadinene, epi-cubenol and β-eudesmol, inhibited the fungal growth and DNA polymerase activities of T. rubrum, and epi-cubenol showed the strongest inhibition among the compounds tested. These sesquiterpenes had no inhibitory effects on the activities of other DNA metabolic enzymes, such as DNA topoisomerase II, IMP dehydrogenase, polynucleotide kinase and deoxyribonuclease from T. rubrum. Taken together, these results suggest that EO-USB containing epi-cubenol may be useful for its anti-tinea disease properties, which are based on DNA polymerase inhibition.

  1. Volcanic stratigraphy of the Barrel Springs--Wild Cherry Formations, Davis Mountains, Trans-Pecos Texas

    SciTech Connect

    Parker, D.F. . Dept. Geology); Henry, C.D. . Bureau of Economic Geology); Kunk, M.J. )

    1993-02-01

    Detailed mapping, stratigraphy, [sup 40]Ar/[sup 39]Ar ages, and geochemistry allow, for the first time, a coherent volcanic history of the Barrel Springs--Wild Cherry (BS-WC) units, the most widespread of the Davis Mountains volcanic field (DMVF). These units erupted dominantly from the [approximately] 20 km-diameter Paradise Mountain caldera (PMC), in the west-central DMVF, where thick, locally silicified and kaolinized intracaldera tuffs and interbedded lavas were resurgently domed by an 8 x 5-km-diameter syenitic intrusion. BS-WC units, all rhyolites, consist dominantly of a lower, moderately porphyritic ash-flow tuff; a petrographically similar, middle ash-flow tuff; and an upper group of voluminous, abundantly porphyritic lavas. The lower ash-flow tuff is strongly rheomorphic throughout its occurrence. The middle ash-flow is also rheomorphic in thick outcrops near the PMC but not in thin ([<=]10m), distal outcrops. These three units are interbedded with lavas lithologically similar to the tuffs near the PMC and with volcaniclastic sedimentary rocks in more distal area. The two ash-flow tuffs are separated by strongly porphyritic trachyte lavas of the Mount Locke Formation in the vicinity of the PMC. Sources and extents of individual flows of the upper lavas have not been positively identified. [sup 40]Ar/[sup 39]Ar ages of alkali feldspar phenocrysts from thirteen samples constrain most BS-WC to a 300 ka span. The lower tuff erupted about 35.6 Ma. The middle tuff and part of the voluminous lava package erupted at 35.3 Ma. Ages of two lavas are 35.1 Ma, which suggests prolonged eruption. Correlations based on lithology and age relations are supplemented by trace element and mineral studies that confirm close geochemical affinities.

  2. Structural coalescence underlies the aggregation propensity of a β-barrel protein motif

    PubMed Central

    Angelani, Carla R.; Caramelo, Julio J.; Curto, Lucrecia M.; Delfino, José M.

    2017-01-01

    A clear understanding of the structural foundations underlying protein aggregation is an elusive goal of central biomedical importance. A step toward this aim is exemplified by the β-barrel motif represented by the intestinal fatty acid binding protein (IFABP) and two abridged all-β sheet forms (Δ98Δ and Δ78Δ). At odds with the established notion that a perturbation of the native fold should necessarily favor a buildup of intermediate forms with an enhanced tendency to aggregate, the intrinsic stability (ΔG°H2O) of these proteins does not bear a straightforward correlation with their trifluoroethanol (TFE)-induced aggregation propensity. In view of this fact, we found it more insightful to delve into the connection between structure and stability under sub-aggregating conditions (10% TFE). In the absence of the co-solvent, the abridged variants display a common native-like region decorated with a disordered C-terminal stretch. Upon TFE addition, an increase in secondary structure content is observed, assimilating them to the parent protein. In this sense, TFE perturbs a common native like region while exerting a global compaction effect. Importantly, in all cases, fatty acid binding function is preserved. Interestingly, energetic as well as structural diversity in aqueous solution evolves into a common conformational ensemble more akin in stability. These facts reconcile apparent paradoxical findings related to stability and rates of aggregation. This scenario likely mimics the accrual of aggregation-prone species in the population, an early critical event for the development of fibrillation. PMID:28187186

  3. Structural coalescence underlies the aggregation propensity of a β-barrel protein motif.

    PubMed

    Angelani, Carla R; Caramelo, Julio J; Curto, Lucrecia M; Delfino, José M

    2017-01-01

    A clear understanding of the structural foundations underlying protein aggregation is an elusive goal of central biomedical importance. A step toward this aim is exemplified by the β-barrel motif represented by the intestinal fatty acid binding protein (IFABP) and two abridged all-β sheet forms (Δ98Δ and Δ78Δ). At odds with the established notion that a perturbation of the native fold should necessarily favor a buildup of intermediate forms with an enhanced tendency to aggregate, the intrinsic stability (ΔG°H2O) of these proteins does not bear a straightforward correlation with their trifluoroethanol (TFE)-induced aggregation propensity. In view of this fact, we found it more insightful to delve into the connection between structure and stability under sub-aggregating conditions (10% TFE). In the absence of the co-solvent, the abridged variants display a common native-like region decorated with a disordered C-terminal stretch. Upon TFE addition, an increase in secondary structure content is observed, assimilating them to the parent protein. In this sense, TFE perturbs a common native like region while exerting a global compaction effect. Importantly, in all cases, fatty acid binding function is preserved. Interestingly, energetic as well as structural diversity in aqueous solution evolves into a common conformational ensemble more akin in stability. These facts reconcile apparent paradoxical findings related to stability and rates of aggregation. This scenario likely mimics the accrual of aggregation-prone species in the population, an early critical event for the development of fibrillation.

  4. Eukaryote-wide sequence analysis of mitochondrial β-barrel outer membrane proteins

    PubMed Central

    2011-01-01

    Background The outer membranes of mitochondria are thought to be homologous to the outer membranes of Gram negative bacteria, which contain 100's of distinct families of β-barrel membrane proteins (BOMPs) often forming channels for transport of nutrients or drugs. However, only four families of mitochondrial BOMPs (MBOMPs) have been confirmed to date. Although estimates as high as 100 have been made in the past, the number of yet undiscovered MBOMPs is an open question. Fortunately, the recent discovery of a membrane integration signal (the β-signal) for MBOMPs gave us an opportunity to look for undiscovered MBOMPs. Results We present the results of a comprehensive survey of eukaryotic protein sequences intended to identify new MBOMPs. Our search employs recent results on β-signals as well as structural information and a novel BOMP predictor trained on both bacterial and mitochondrial BOMPs. Our principal finding is circumstantial evidence suggesting that few MBOMPs remain to be discovered, if one assumes that, like known MBOMPs, novel MBOMPs will be monomeric and β-signal dependent. In addition to this, our analysis of MBOMP homologs reveals some exceptions to the current model of the β-signal, but confirms its consistent presence in the C-terminal region of MBOMP proteins. We also report a β-signal independent search for MBOMPs against the yeast and Arabidopsis proteomes. We find no good candidates MBOMPs in yeast but the Arabidopsis results are less conclusive. Conclusions Our results suggest there are no remaining MBOMPs left to discover in yeast; and if one assumes all MBOMPs are β-signal dependent, few MBOMP families remain undiscovered in any sequenced organism. PMID:21272379

  5. Morphological Characteristics of Electrophysiologically Characterized Layer Vb Pyramidal Cells in Rat Barrel Cortex

    PubMed Central

    Loucif, Alexandre J. C.; Schubert, Dirk; Möck, Martin

    2016-01-01

    Layer Vb pyramidal cells are the major output neurons of the neocortex and transmit the outcome of cortical columnar signal processing to distant target areas. At the same time they contribute to local tactile information processing by emitting recurrent axonal collaterals into the columnar microcircuitry. It is, however, not known how exactly the two types of pyramidal cells, called slender-tufted and thick-tufted, contribute to the local circuitry. Here, we investigated in the rat barrel cortex the detailed quantitative morphology of biocytin-filled layer Vb pyramidal cells in vitro, which were characterized for their intrinsic electrophysiology with special emphasis on their action potential firing pattern. Since we stained the same slices for cytochrome oxidase, we could also perform layer- and column-related analyses. Our results suggest that in layer Vb the unambiguous action potential firing patterns "regular spiking (RS)" and "repetitive burst spiking (RB)" (previously called intrinsically burst spiking) correlate well with a distinct morphology. RS pyramidal cells are somatodendritically of the slender-tufted type and possess numerous local intralaminar and intracolumnar axonal collaterals, mostly reaching layer I. By contrast, their transcolumnar projections are less well developed. The RB pyramidal cells are somatodendritically of the thick-tufted type and show only relatively sparse local axonal collaterals, which are preferentially emitted as long horizontal or oblique infragranular collaterals. However, contrary to many previous slice studies, a substantial number of these neurons also showed axonal collaterals reaching layer I. Thus, electrophysiologically defined pyramidal cells of layer Vb show an input and output pattern which suggests RS cells to be more "locally segregating" signal processors whereas RB cells seem to act more on a "global integrative" scale. PMID:27706253

  6. Thermal Energy Exchange Model and Water Loss of a Barrel Cactus, Ferocactus acanthodes.

    PubMed

    Lewis, D A; Nobel, P S

    1977-10-01

    The influences of various diurnal stomatal opening patterns, spines, and ribs on the stem surface temperature and water economy of a CAM succulent, the barrel cactus Ferocactus acanthodes, were examined using an energy budget model. To incorporate energy exchanges by shortwave and longwave irradiation, latent heat, conduction, and convection as well as the heat storage in the massive stem, the plant was subdivided into over 100 internal and external regions in the model. This enabled the average surface temperature to be predicted within 1 C of the measured temperature for both winter and summer days.Reducing the stem water vapor conductance from the values observed in the field to zero caused the average daily stem surface temperature to increase only 0.7 C for a winter day and 0.3 C for a summer day. Thus, latent heat loss does not substantially reduce stem temperature. Although the surface temperatures averaged 18 C warmer for the summer day than for the winter day for a plant 41 cm tall, the temperature dependence of stomatal opening caused the simulated nighttime water loss rates to be about the same for the 2 days.Spines moderated the amplitude of the diurnal temperature changes of the stem surface, since the daily variation was 17 C for the winter day and 25 C for the summer day with spines compared with 23 C and 41 C, respectively, in their simulated absence. Ribs reduced the daytime temperature rise by providing 54% more area for convective heat loss than for a smooth circumscribing surface. In a simulation where both spines and ribs were eliminated, the daytime average surface temperature rose by 5 C.

  7. Thermal Energy Exchange Model and Water Loss of a Barrel Cactus, Ferocactus acanthodes1

    PubMed Central

    Lewis, Donald A.; Nobel, Park S.

    1977-01-01

    The influences of various diurnal stomatal opening patterns, spines, and ribs on the stem surface temperature and water economy of a CAM succulent, the barrel cactus Ferocactus acanthodes, were examined using an energy budget model. To incorporate energy exchanges by shortwave and longwave irradiation, latent heat, conduction, and convection as well as the heat storage in the massive stem, the plant was subdivided into over 100 internal and external regions in the model. This enabled the average surface temperature to be predicted within 1 C of the measured temperature for both winter and summer days. Reducing the stem water vapor conductance from the values observed in the field to zero caused the average daily stem surface temperature to increase only 0.7 C for a winter day and 0.3 C for a summer day. Thus, latent heat loss does not substantially reduce stem temperature. Although the surface temperatures averaged 18 C warmer for the summer day than for the winter day for a plant 41 cm tall, the temperature dependence of stomatal opening caused the simulated nighttime water loss rates to be about the same for the 2 days. Spines moderated the amplitude of the diurnal temperature changes of the stem surface, since the daily variation was 17 C for the winter day and 25 C for the summer day with spines compared with 23 C and 41 C, respectively, in their simulated absence. Ribs reduced the daytime temperature rise by providing 54% more area for convective heat loss than for a smooth circumscribing surface. In a simulation where both spines and ribs were eliminated, the daytime average surface temperature rose by 5 C. PMID:16660148

  8. Optimizing nanodiscs and bicelles for solution NMR studies of two β-barrel membrane proteins

    PubMed Central

    Kucharska, Iga; Edrington, Thomas C.; Liang, Binyong

    2015-01-01

    Solution NMR spectroscopy has become a robust method to determine structures and explore the dynamics of integral membrane proteins. The vast majority of previous studies on membrane proteins by solution NMR have been conducted in lipid micelles. Contrary to the lipids that form a lipid bilayer in biological membranes, micellar lipids typically contain only a single hydrocarbon chain or two chains that are too short to form a bilayer. Therefore, there is a need to explore alternative more bilayer-like media to mimic the natural environment of membrane proteins. Lipid bicelles and lipid nanodiscs have emerged as two alternative membrane mimetics that are compatible with solution NMR spectroscopy. Here, we have conducted a comprehensive comparison of the physical and spectroscopic behavior of two outer membrane proteins from Pseudomonas aeruginosa, OprG and OprH, in lipid micelles, bicelles, and nanodiscs of five different sizes. Bicelles stabilized with a fraction of negatively charged lipids yielded spectra of almost comparable quality as in the best micellar solutions and the secondary structures were found to be almost indistinguishable in the two environments. Of the five nanodiscs tested, nanodiscs assembled from MSP1D1ΔH5 performed the best with both proteins in terms of sample stability and spectral resolution. Even in these optimal nanodiscs some broad signals from the membrane embedded barrel were severely overlapped with sharp signals from the flexible loops making their assignments difficult. A mutant OprH that had two of the flexible loops truncated yielded very promising spectra for further structural and dynamical analysis in MSP1D1ΔH5 nanodiscs. PMID:25869397

  9. Alaska marine ice atlas

    SciTech Connect

    LaBelle, J.C.; Wise, J.L.; Voelker, R.P.; Schulze, R.H.; Wohl, G.M.

    1982-01-01

    A comprehensive Atlas of Alaska marine ice is presented. It includes information on pack and landfast sea ice and calving tidewater glacier ice. It also gives information on ice and related environmental conditions collected over several years time and indicates the normal and extreme conditions that might be expected in Alaska coastal waters. Much of the information on ice conditions in Alaska coastal waters has emanated from research activities in outer continental shelf regions under assessment for oil and gas exploration and development potential. (DMC)

  10. A Photographic Atlas of Selected Regions of the Milky Way

    NASA Astrophysics Data System (ADS)

    Barnard, Edward Emerson; Orin Dobek, Foreword by Gerald

    2014-08-01

    Foreword Gerald Orin Dobek; Preface from the original Atlas; Introduction from the original Atlas; Bibliography from the original Atlas; Catalogue of 349 dark objects in the sky; Biography of Edward Emerson Barnard.

  11. ATLAS DBM Module Qualification

    SciTech Connect

    Soha, Aria; Gorisek, Andrej; Zavrtanik, Marko; Sokhranyi, Grygorii; McGoldrick, Garrin; Cerv, Matevz

    2014-06-18

    This is a technical scope of work (TSW) between the Fermi National Accelerator Laboratory (Fermilab) and the experimenters of Jozef Stefan Institute, CERN, and University of Toronto who have committed to participate in beam tests to be carried out during the 2014 Fermilab Test Beam Facility program. Chemical Vapour Deposition (CVD) diamond has a number of properties that make it attractive for high energy physics detector applications. Its large band-gap (5.5 eV) and large displacement energy (42 eV/atom) make it a material that is inherently radiation tolerant with very low leakage currents and high thermal conductivity. CVD diamond is being investigated by the RD42 Collaboration for use very close to LHC interaction regions, where the most extreme radiation conditions are found. This document builds on that work and proposes a highly spatially segmented diamond-based luminosity monitor to complement the time-segmented ATLAS Beam Conditions Monitor (BCM) so that, when Minimum Bias Trigger Scintillators (MTBS) and LUCID (LUminosity measurement using a Cherenkov Integrating Detector) have difficulty functioning, the ATLAS luminosity measurement is not compromised.

  12. Tampa Bay environmental atlas

    SciTech Connect

    Kunneke, J.T.; Palik, T.F.

    1984-12-01

    Biological and water resource data for Tampa Bay were compiled and mapped at a scale of 1:24,000. This atlas consists of (1) composited information overlain on 18 biological and 20 water resource base maps and (2) an accompanying map narrative. Subjects mapped on the water resource maps are contours of the mean middepth specific conductivity which can be converted to salinity; bathymetry, sediments, tidal currents, the freshwater/saltwater interface, dredge spoil disposal sites; locations of industrial and municipal point source discharges, tide stations, and water quality sampling stations. The point source discharge locations show permitted capacity and the water quality sampling stations show 5-year averages for chlorophyll, conductivity, turbidity, temperature, and total nitrogen. The subjects shown on the biological resource maps are clam and oyster beds, shellfish harvest areas, colonial bird nesting sites, manatee habitat, seagrass beds and artificial reefs. Spawning seasons, nursery habitats, and adult habitats are identified for major fish species. The atlas will provide useful information for coastal planning and management in Tampa Bay.

  13. Jet measurements in ATLAS

    NASA Astrophysics Data System (ADS)

    Loch, Peter; ATLAS Collaboration

    2011-11-01

    The reconstruction of jets generated in the proton-proton collisions at the Large Hadron Collider (LHC) at a center of mass energy of TeV with the ATLAS detector is discussed. Beginning with a brief review of the calorimeter signal definitions relevant for jet finding, and the use of reconstructed charged particle tracks, the jet reconstruction strategy is described in some detail. Emphasis is put on the jet energy scale (JES) calibration strategy applied for first data, which is based on a short sequence of data driven and simulation based calibrations and corrections to restore the measured jet energy to particle level. The level of understanding of the signal patterns entering the JES corrections is shown for selected variables in comparisons to simulations. The present systematic uncertainties on the JES, which can be as low as 2% for central jets, are presented and analyzed with respect to the individual fractional contributions entering their determination. Some characteristic jet reconstruction performance and selected results from the first year of jet physics with ATLAS in a newly accessible kinematic domain are shown in conclusion.

  14. Data flow analysis of a highly parallel processor for a level 1 pixel trigger

    SciTech Connect

    Cancelo, G.; Gottschalk, Erik Edward; Pavlicek, V.; Wang, M.; Wu, J.

    2003-01-01

    The present work describes the architecture and data flow analysis of a highly parallel processor for the Level 1 Pixel Trigger for the BTeV experiment at Fermilab. First the Level 1 Trigger system is described. Then the major components are analyzed by resorting to mathematical modeling. Also, behavioral simulations are used to confirm the models. Results from modeling and simulations are fed back into the system in order to improve the architecture, eliminate bottlenecks, allocate sufficient buffering between processes and obtain other important design parameters. An interesting feature of the current analysis is that the models can be extended to a large class of architectures and parallel systems.

  15. Space Telecommunications Radio System (STRS) Architecture Goals/Objectives and Level 1 Requirements

    NASA Technical Reports Server (NTRS)

    Briones, Janette C.; Johnson, Sandra K.; VanDerAar, Lisa

    2007-01-01

    The Space Telecommunications Radio System (STRS) Architecture Requirements Document provides the basis for the development of an open architecture for NASA Software Defined Radios (SDRs) for space use. The main objective of this document is to evaluate the goals and objectives and high level (Level 1) requirements that have bearing on the design of the architecture. The goals and objectives will provide broad, fundamental direction and purpose. The high level requirements (Level 1) intend to guide the broader and longer term aspects aspects of the SDR Architecture and provide guidance for the development of level 2 requirements.

  16. National Atlas of the United States Maps

    USGS Publications Warehouse

    ,

    2001-01-01

    The "National Atlas of the United States of America®", published by the U.S. Geological Survey (USGS) in 1970, is out of print, but many of its maps can be purchased separately. Maps that span facing pages in the atlas are printed on one sheet. Maps dated after 1970 and before 1997 are either revisions of original atlas maps or new maps published in the original atlas format. The USGS and its partners in government and industry began work on a new "National Atlas" in 1997. Though most new atlas products are designed for the World Wide Web, we are continuing our tradition of printing high-quality maps of America. In 1998, the first completely redesigned maps of the "National Atlas of the United States®" were published.

  17. Anti-Atlas Mountains, Morocco

    NASA Technical Reports Server (NTRS)

    2002-01-01

    The Anti-Atlas Mountains of northern Africa and the nearby Atlas mountains were created by the prolonged collision of the African and Eurasian tectonic plates, beginning about 80 million years ago. Massive sandstone and limestone layers have been crumpled and uplifted more than 4,000 meters in the High Atlas and to lower elevations in the Anti-Atlas. Between more continuous major fold structures, such as the Jbel Ouarkziz in the southwestern Anti-Atlas, tighter secondary folds (arrow) have developed. Earlier, the supercontinent of Pangea rifted apart to form precursors to the Mediterranean and the Atlantic Ocean (Beauchamp and others, 1996). In those seas sands, clays, limey sediments, and evaporite layers (gypsum, rock salt) were deposited. Later, during the mountain-building plate collision, the gypsum layers flowed under the pressure and provided a slippery surface on which overlying rigid rocks could glide (Burkhard, 2001). The broad, open style of folds seen in this view is common where evaporites are involved in the deformation. Other examples can be found in the Southern Zagros of Iran and the Sierra Madre Oriental of Mexico. Information Sources: Beauchamp, W., Barazangi, M., Demnati, A., and El Alji, M., 1996, Intracontinental rifting and inversion: Missour Basin and Atlas Mountains, Morocco: Tulsa, American Association of Petroleum Geologists Bulletin, v. 80, No. 9, p. 1459-1482. Burkhard, Martin, 2001, Tectonics of the Anti-Atlas of Morocco -- Thin-skin/thick-skin relationships in an atypical foreland fold belt. University of Neuchatel, Switzerland: http://www-geol.unine.ch/Structural/Antiatlas.html (accessed 1/29/02). STS108-711-25 was taken in December, 2001 by the crew of Space Shuttle mission 108 using a Hasselblad camera with 250-mm lens. The image is provided by the Earth Sciences and Image Analysis Laboratory at Johnson Space Center. Additional images taken by astronauts and cosmonauts can be viewed at the NASA-JSC Gateway to Astronaut Photography

  18. Whisker row deprivation affects the flow of sensory information through rat barrel cortex

    PubMed Central

    Jacob, Vincent; Mitani, Akinori; Toyoizumi, Taro

    2016-01-01

    Whisker trimming causes substantial reorganization of neuronal response properties in barrel cortex. However, little is known about experience-dependent rerouting of sensory processing following sensory deprivation. To address this, we performed in vivo intracellular recordings from layers 2/3 (L2/3), layer 4 (L4), layer 5 regular-spiking (L5RS), and L5 intrinsically bursting (L5IB) neurons and measured their multiwhisker receptive field at the level of spiking activity, membrane potential, and synaptic conductance before and after sensory deprivation. We used Chernoff information to quantify the “sensory information” contained in the firing patterns of cells in response to spared and deprived whisker stimulation. In the control condition, information for flanking-row and same-row whiskers decreased in the order L4, L2/3, L5IB, L5RS. However, after whisker-row deprivation, spared flanking-row whisker information was reordered to L4, L5RS, L5IB, L2/3. Sensory information from the trimmed whiskers was reduced and delayed in L2/3 and L5IB neurons, whereas sensory information from spared whiskers was increased and advanced in L4 and L5RS neurons. Sensory information from spared whiskers was increased in L5IB neurons without a latency change. L5RS cells exhibited the largest changes in sensory information content through an atypical plasticity combining a significant decrease in spontaneous activity and an increase in a short-latency excitatory conductance. NEW & NOTEWORTHY Sensory cortical plasticity is usually quantified by changes in evoked firing rate. In this study we quantified plasticity by changes in sensory detection performance using Chernoff information and receiver operating characteristic analysis. We found that whisker deprivation causes a change in information flow within the cortical layers and that layer 5 regular-spiking cells, despite showing only a small potentiation of short-latency input, show the greatest increase in information content for

  19. Barrel organ of plate tectonics - a new tool for outreach and education

    NASA Astrophysics Data System (ADS)

    Broz, Petr; Machek, Matěj; Šorm, Zdar

    2016-04-01

    Plate tectonics is the major geological concept to explain dynamics and structure of Earth's outer shell, the lithosphere. In the plate tectonic theory processes in the Earth lithosphere and its dynamics is driven by the relative motion and interaction of lithospheric plates. Geologically most active regions on Earth often correlate with the lithospheric plate boundaries. Thus for explaining the earth surface evolution, mountain building, volcanism and earthquake origin it is important to understand processes at the plate boundaries. However these processes associated with plate tectonics usually require significant period of time to take effects, therefore, their entire cycles cannot be directly observed in the nature by humans. This makes a challenge for scientists studying these processes, but also for teachers and popularizers trying to explain them to students and to the general public. Therefore, to overcome this problem, we developed a mechanical model of plate tectonics enabling demonstration of most important processes associated with plate tectonics in real time. The mechanical model is a wooden box, more specifically a special type of barrel organ, with hand painted backdrops in the front side. These backdrops are divided into several components representing geodynamic processes associated with plate tectonics, specifically convective currents occurring in the mantle, sea-floor spreading, a subduction of the oceanic crust under the continental crust, partial melting and volcanism associated with subduction, a formation of magmatic stripes, an ascent of mantle plume throughout the mantle, a volcanic activity associated with hot spots, and a formation and degradation of volcanic islands on moving lithospheric plate. All components are set in motion by a handle controlled by a human operator, and the scene is illuminated with colored lights controlled automatically by an electric device embedded in the box. Operation of the model may be seen on www

  20. Characterization of a novel β-barrel protein (AtOM47) from the mitochondrial outer membrane of Arabidopsis thaliana

    PubMed Central

    Li, Lu; Kubiszewski-Jakubiak, Szymon; Radomiljac, Jordan; Wang, Yan; Law, Simon R.; Keech, Olivier; Narsai, Reena; Berkowitz, Oliver; Duncan, Owen; Murcha, Monika W.; Whelan, James

    2016-01-01

    In plant cells, mitochondria are major providers of energy and building blocks for growth and development as well as abiotic and biotic stress responses. They are encircled by two lipid membranes containing proteins that control mitochondrial function through the import of macromolecules and metabolites. Characterization of a novel β-barrel protein, OUTER MEMBRANE PROTEIN 47 (OM47), unique to the green lineage and related to the voltage-dependent anion channel (VDAC) protein family, showed that OM47 can complement a VDAC mutant in yeast. Mutation of OM47 in Arabidopsis thaliana by T-DNA insertion had no effect on the import of proteins, such as the β-barrel proteins translocase of the outer membrane 40 (TOM40) or sorting and assembly machinery 50 (SAM50), into mitochondria. Molecular and physiological analyses revealed a delay in chlorophyll breakdown, higher levels of starch, and a delay in the induction of senescence marker genes in the mutant lines. While there was a reduction of >90% in OM47 protein in mitochondria isolated from 3-week-old om47 mutants, in mitochondria isolated from 8-week-old plants OM47 levels were similar to that of the wild type. This recovery was achieved by an up-regulation of OM47 transcript abundance in the mutants. Combined, these results highlight a role in leaf senescence for this plant-specific β-barrel protein, probably mediating the recovery and recycling of chloroplast breakdown products by transporting metabolic intermediates into and out of mitochondria. PMID:27811077

  1. The BaBar Level 1 Drift-Chamber Trigger Upgrade With 3D Tracking

    SciTech Connect

    Chai, X.D.; /Iowa U.

    2005-11-29

    At BABAR, the Level 1 Drift Chamber trigger is being upgraded to reduce increasing background rates while the PEP-II luminosity keeps improving. This upgrade uses the drift time information and stereo wires in the drift chamber to perform a 3D track reconstruction that effectively rejects background events spread out along the beam line.

  2. Occupational Health and Safety. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Gadd, Nick; Lucas, Michele

    This publication contains the three communication skills units of the three levels of Support Materials for Agricultural Training (SMAT) in the area of occupational health and safety: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her written and spoken communication skills needed…

  3. BOREAS RSS-14 Level 1a GOES-7 Visible, IR, and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Newcomer, Jeffrey A.; Faysash, David; Cooper, Harry J.; Smith, Eric A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed GOES-7 and -8 images of the BOREAS region as part of its effort to characterize the incoming, reflected, and emitted radiation at regional scales. The level-1a BOREAS GOES-7 image data were collected by RSS-14 personnel at FSU and processed to level-1a products by BORIS personnel. The data cover the period of 01-Jan-1994 through 08-Jul-1995 with partial to complete coverage on the majority of the days. The data include three bands with eightbit pixel values. No major problems with the data have been identified. Due to the large size of the images, the level-1a GOES-7 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1a GOES-7 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  4. Agricultural Production. Numeracy. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Tully, Chris

    This publication contains the three numeracy units of the three levels of Support Materials for Agricultural Training (SMAT) in agricultural production: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her numeracy skills needed to deal with agricultural production. SMAT materials…

  5. A Tracking Analysis of Compact Students within Level 1 of Their Higher Education Programmes

    ERIC Educational Resources Information Center

    Wakely, Katrina; Saunders, Danny

    2004-01-01

    This article presents a tracking analysis of level 1 undergraduates who entered the University of Glamorgan through the Compact schools initiative. The Compact initiative aims to widen access to higher education by encouraging young people from disadvantaged backgrounds to attend a range of preparatory activities and by offering lower entry…

  6. Criterion Referenced Tests to Accompany "Artes Latinae," Level 1, Book 1. Tentative Edition.

    ERIC Educational Resources Information Center

    Masciantonio, Rudolph

    These tests are designed to measure the achievement of each pupil at the approximate midpoint of each unit in "Artes Latinae," Level 1, Book 1. They were produced in response to the need expressed by many teachers to provide a means of more frequent evaluation of pupil progress. Tests for 13 units are provided. They supplement the unit tests…

  7. Occupational Health and Safety. Numeracy. Level 1. Level 2. Level 3. Support Materials for Agricultural Training.

    ERIC Educational Resources Information Center

    Batman, Kangan; Tully, Chris

    This publication contains the three numeracy units of the three levels of Support Materials for Agricultural Training (SMAT) in the area of occupational health and safety: Level 1 (starting), 2 (continuing), and 3 (completing). The units are designed to help the learner improve his or her numeracy skills needed to deal with occupational safety and…

  8. 78 FR 54655 - Center for Devices and Radiological Health: Draft Standard Operating Procedure for Level 1...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-05

    ... HUMAN SERVICES Food and Drug Administration Center for Devices and Radiological Health: Draft Standard Operating Procedure for Level 1, Immediately in Effect Guidance Documents on Premarket Data Issues; Availability and Request for Comments AGENCY: Food and Drug Administration, HHS. ACTION: Notice; request...

  9. Teaching Guide for Indian Literature. Volume I. Reading Level 1-8.

    ERIC Educational Resources Information Center

    Campbell, Diana; McCarty, T. L., Ed.

    The guide describes how to use a 9-point system to teach 11 high-interest, low-level novels about Indians and teenagers to students reading at levels 1-8. The nine steps are (1) determine student's instructional reading level, (2) determine level of novels to be read, (3) choose novel at student's instructional reading level, (4) introduce novel,…

  10. D.P.I. Primary Reading Criterion-Referenced Screening Test, Levels 1, 2, 3.

    ERIC Educational Resources Information Center

    Brown Education Center, Louisville, KY.

    The Diagnostic Prescriptive Individualized (D.P.I.) Primary Reading Criterion-Referenced Screening Test Levels 1, 2 and 3 are diagnostic tests geared toward aiding the teacher of grade 1 and 2 children in identifying the academic strengths, weaknesses, and needs of each student. These tests are concerned with the overall screening of skills of…

  11. FTK: The hardware Fast TracKer of the ATLAS experiment at CERN

    NASA Astrophysics Data System (ADS)

    Maznas, Ioannis

    2017-03-01

    In the ever increasing pile-up environment of the Large Hadron Collider, trigger systems of the experiments must use more sophisticated techniques in order to increase purity of signal physics processes with respect to background processes. The Fast TracKer (FTK) is a track finding system implemented in custom hardware that is designed to deliver full-scan tracks with pT above 1 GeV to the ATLAS trigger system for every Level-1 (L1) accept (at a maximum rate of 100 kHz). To accomplish this, FTK is a highly parallel system which is currently being installed in ATLAS. It will first provide the trigger system with tracks in the central region of the ATLAS detector, and next year it is expected that it will cover the whole detector. The system is based on pattern matching between hits coming from the silicon trackers of the ATLAS detector and one billion simulated patterns stored in specially designed ASIC Associative Memory chips. This document will provide an overview of the FTK system architecture, its design and information about its expected performance.

  12. The Upgrade of the ATLAS Electron and Photon Triggers for LHC Run 2 and their Performance

    NASA Astrophysics Data System (ADS)

    Thomson, Evelyn; Atlas Collaboration

    2016-03-01

    Electron and photon triggers covering transverse energies from 5 GeV to several TeV are essential for signal selection in a wide variety of ATLAS physics analyses to study Standard Model processes and to search for new phenomena. Final states including leptons and photons had, for example, an important role in the discovery and measurement of the Higgs particle. Dedicated triggers are also used to collect data for calibration, efficiency and fake rate measurements. The ATLAS trigger system is divided in a hardware-based (Level 1) and a software based high level trigger (HLT), both of which were upgraded during the long shutdown of the LHC in preparation for data taking in 2015. The increasing luminosity and more challenging pile-up conditions as well as the planned higher center-of-mass energy demanded the optimisation of the trigger selections at each level, to control the rates and keep efficiencies high. To improve the performance multivariate analysis techniques are introduced at the HLT. The evolution of the ATLAS electron and photon triggers and their performance will be presented, including new results from the 2015 LHC Run 2 operation. Submitted on behalf of ATLAS electron and photon combined performance group. Speaker is yet to be chosen.

  13. Apparatus and method for quantitative assay of samples of transuranic waste contained in barrels in the presence of matrix material

    DOEpatents

    Caldwell, J.T.; Herrera, G.C.; Hastings, R.D.; Shunk, E.R.; Kunz, W.E.

    1987-08-28

    Apparatus and method for performing corrections for matrix material effects on the neutron measurements generated from analysis of transuranic waste drums using the differential-dieaway technique. By measuring the absorption index and the moderator index for a particular drum, correction factors can be determined for the effects of matrix materials on the ''observed'' quantity of fissile and fertile material present therein in order to determine the actual assays thereof. A barrel flux monitor is introduced into the measurement chamber to accomplish these measurements as a new contribution to the differential-dieaway technology. 9 figs.

  14. Genetic analysis of posterior medial barrel subfield (PMBSF) size in somatosensory cortex (SI) in recombinant inbred strains of mice

    PubMed Central

    Jan, Taha A; Lu, Lu; Li, Cheng-Xiang; Williams, Robert W; Waters, Robert S

    2008-01-01

    Background Quantitative trait locus (QTL) mapping is an important tool for identifying potential candidate genes linked to complex traits. QTL mapping has been used to identify genes associated with cytoarchitecture, cell number, brain size, and brain volume. Previously, QTL mapping was utilized to examine variation of barrel field size in the somatosensory cortex in a limited number of recombinant inbred (RI) strains of mice. In order to further elucidate the underlying natural variation in mouse primary somatosensory cortex, we measured the size of the posterior medial barrel subfield (PMBSF), associated with the representation of the large mystacial vibrissae, in an expanded sample set that included 42 BXD RI strains, two parental strains (C57BL/6J and DBA/2J), and one F1 strain (B6D2F1). Cytochrome oxidase labeling was used to visualize barrels within the PMBSF. Results We observed a 33% difference between the largest and smallest BXD RI strains with continuous variation in-between. Using QTL linkage analysis from WebQTL, we generated linkage maps of raw total PMBSF and brain weight adjusted total PMBSF areas. After removing the effects of brain weight, we detected a suggestive QTL (likelihood ratio statistic [LRS]: 14.20) on the proximal arm of chromosome 4. Candidate genes under the suggestive QTL peak for PMBSF area were selected based on the number of single nucleotide polymorphisms (SNPs) present and the biological relevance of each gene. Among the candidate genes are Car8 and Rab2. More importantly, mRNA expression profiles obtained using GeneNetwork indicated a strong correlation between total PMBSF area and two genes (Adcy1 and Gap43) known to be important in mouse cortex development. GAP43 has been shown to be critical during neurodevelopment of the somatosensory cortex, while knockout Adcy1 mice have disrupted barrel field patterns. Conclusion We detected a novel suggestive QTL on chromosome 4 that is linked to PMBSF size. The present study is an

  15. Our Treatment Approaches in Severe Maxillofacial Injuries Occurring After Failed Suicide Attempts Using Long-Barreled Guns.

    PubMed

    Kucuker, Ismail; Şimşek, Tekin; Keles, Musa Kemal; Yosma, Engin; Aksakal, Ibrahim Alper; Demir, Ahmet

    2016-03-01

    Maxillofacial traumas with long-barreled guns may sometimes cause catastrophic results by means of smashing in facial structures. In these patients, reconstruction strategies of both fragmented/lost soft and hard tissues still remain controversial. In their clinic, the authors treated 5 patients with severely injured face after failed suicide attempt between 2008 and 2013. In this study, the authors aimed to present their clinical experiences on these severely injured maxillofacial gunshot traumas and offer a treatment algorithm to gain a result as possible as satisfactory in terms of functionality and appearance.

  16. CryoSat Level1b SAR/SARin: quality improvements towards BaselineC

    NASA Astrophysics Data System (ADS)

    Scagliola, Michele; Fornari, Marco; Bouzinac, Catherine; Tagliani, Nicolas; Parrinello, Tommaso

    2014-05-01

    CryoSat was launched on the 8th April 2010 and it is the first European ice mission dedicated to monitoring precise changes in the thickness of polar ice sheets and floating sea ice over a 3-year period. Cryosat carries an innovative radar altimeter called the Synthetic Aperture Interferometric Altimeter (SIRAL), that transmits pulses at a high pulse repetition frequency thus making the received echoes phase coherent and suitable for azimuth processing. This allows to reach a significantly improved along track resolution with respect to traditional pulse-width limited altimeters. CryoSat is the first altimetry mission operating in SAR mode and continuous improvement in the Level1 Instrument Processing Facility (IPF1) are being identified, tested and validated in order to improve the quality of the Level1b products. Towards the release of the BaselineC of the CryoSat Level1b SAR/SARin products, that is expected during 2014, several improvements have been identified: • a datation bias of about -0.5195 ms will be corrected • a range bias of about -0.6730 m will be corrected • the waveform length in the Level1b product will be doubled with respect to BaselineB • improved processing for 1Hz echoes to have sharper waveforms • surface sample stack weighting to filter out the single look echoes acquired at highest look angle, that results in a sharpening of the 20Hz waveforms This poster details the main improvements that are foreseen to be included in the CryoSat Level1b SAR/SARin products in BaselineC.

  17. Cryosat Level1b SAR/Sarin: Improving the Quality of the Baseline C Products

    NASA Astrophysics Data System (ADS)

    Scagliola, M.; Fornari, M.; Tagliani, N.; Frommknecht, B.; Bouffard, J.; Parrinello, T.

    2014-12-01

    CryoSat was launched on the 8th April 2010 and it is the first European ice mission dedicated to monitoring precise changes in the thickness of polar ice sheets and floating sea ice over a 3-year period. Cryosat carries an innovative radar altimeter called the Synthetic Aperture Interferometric Altimeter (SIRAL), that transmits pulses at a high pulse repetition frequency thus making the received echoes phase coherent and suitable for azimuth processing. This allows to reach a significantly improved along track resolution with respect to traditional pulse-width limited altimeters. CryoSat is the first altimetry mission operating in SAR mode and continuous improvement in the Level1 Instrument Processing Facility (IPF1) are being identified, tested and validated in order to improve the quality of the Level1b products. Towards the release of the BaselineC of the CryoSat Level1b SAR/SARin products, that is expected at the end of 2014, several improvements have been identified: a datation bias of about -0.5195 ms will be corrected a range bias of about 0.6730 m will be corrected The range window size will be doubled with respect to BaselineB, so that the in Level1b products the waveforms will be doubled too Improved processing for 1Hz echoes to have sharper waveforms Surface sample stack weighting to filter out the single look echoes acquired at highest look angle, that results in a sharpening of the 20Hz waveforms Additional auxiliary information related to the mispointing angles of the instrument as well as to the stacks of single look echoes will be added This poster details the main quality improvements that are foreseen to be included in the CryoSat Level1b SAR/SARin products in BaselineC.

  18. Cassini Tour Atlas Automated Generation

    NASA Technical Reports Server (NTRS)

    Grazier, Kevin R.; Roumeliotis, Chris; Lange, Robert D.

    2011-01-01

    During the Cassini spacecraft s cruise phase and nominal mission, the Cassini Science Planning Team developed and maintained an online database of geometric and timing information called the Cassini Tour Atlas. The Tour Atlas consisted of several hundreds of megabytes of EVENTS mission planning software outputs, tables, plots, and images used by mission scientists for observation planning. Each time the nominal mission trajectory was altered or tweaked, a new Tour Atlas had to be regenerated manually. In the early phases of Cassini s Equinox Mission planning, an a priori estimate suggested that mission tour designers would develop approximately 30 candidate tours within a short period of time. So that Cassini scientists could properly analyze the science opportunities in each candidate tour quickly and thoroughly so that the optimal series of orbits for science return could be selected, a separate Tour Atlas was required for each trajectory. The task of manually generating the number of trajectory analyses in the allotted time would have been impossible, so the entire task was automated using code written in five different programming languages. This software automates the generation of the Cassini Tour Atlas database. It performs with one UNIX command what previously took a day or two of human labor.

  19. Associations of Unilateral Whisker and Olfactory Signals Induce Synapse Formation and Memory Cell Recruitment in Bilateral Barrel Cortices: Cellular Mechanism for Unilateral Training Toward Bilateral Memory

    PubMed Central

    Gao, Zilong; Chen, Lei; Fan, Ruicheng; Lu, Wei; Wang, Dangui; Cui, Shan; Huang, Li; Zhao, Shidi; Guan, Sudong; Zhu, Yan; Wang, Jin-Hui

    2016-01-01

    Somatosensory signals and operative skills learned by unilateral limbs can be retrieved bilaterally. In terms of cellular mechanism underlying this unilateral learning toward bilateral memory, we hypothesized that associative memory cells in bilateral cortices and synapse innervations between them were produced. In the examination of this hypothesis, we have observed that paired unilateral whisker and odor stimulations led to odorant-induced whisker motions in bilateral sides, which were attenuated by inhibiting the activity of barrel cortices. In the mice that showed bilateral cross-modal responses, the neurons in both sides of barrel cortices became to encode this new odor signal alongside the innate whisker signal. Axon projections and synapse formations from the barrel cortex, which was co-activated with the piriform cortex, toward its contralateral barrel cortex (CBC) were upregulated. Glutamatergic synaptic transmission in bilateral barrel cortices was upregulated and GABAergic synaptic transmission was downregulated. The associative activations of the sensory cortices facilitate new axon projection, glutamatergic synapse formation and GABAergic synapse downregulation, which drive the neurons to be recruited as associative memory cells in the bilateral cortices. Our data reveal the productions of associative memory cells and synapse innervations in bilateral sensory cortices for unilateral training toward bilateral memory. PMID:28018178

  20. Mitochondrial-bacterial hybrids of BamA/Tob55 suggest variable requirements for the membrane integration of β-barrel proteins

    PubMed Central

    Pfitzner, Anna-Katharina; Steblau, Nadja; Ulrich, Thomas; Oberhettinger, Philipp; Autenrieth, Ingo B.; Schütz, Monika; Rapaport, Doron

    2016-01-01

    β-Barrel proteins are found in the outer membrane (OM) of Gram-negative bacteria, chloroplasts and mitochondria. The assembly of these proteins into the corresponding OM is facilitated by a dedicated protein complex that contains a central conserved β-barrel protein termed BamA in bacteria and Tob55/Sam50 in mitochondria. BamA and Tob55 consist of a membrane-integral C-terminal domain that forms a β-barrel pore and a soluble N-terminal portion comprised of one (in Tob55) or five (in BamA) polypeptide transport-associated (POTRA) domains. Currently the functional significance of this difference and whether the homology between BamA and Tob55 can allow them to replace each other are unclear. To address these issues we constructed hybrid Tob55/BamA proteins with differently configured N-terminal POTRA domains. We observed that constructs harboring a heterologous C-terminal domain could not functionally replace the bacterial BamA or the mitochondrial Tob55 demonstrating species-specific requirements. Interestingly, the various hybrid proteins in combination with the bacterial chaperones Skp or SurA supported to a variable extent the assembly of bacterial β-barrel proteins into the mitochondrial OM. Collectively, our findings suggest that the membrane assembly of various β-barrel proteins depends to a different extent on POTRA domains and periplasmic chaperones. PMID:27982054

  1. Mechanical studies towards a silicon micro-strip super module for the ATLAS inner detector upgrade at the high luminosity LHC

    NASA Astrophysics Data System (ADS)

    Barbier, G.; Cadoux, F.; Clark, A.; Endo, M.; Favre, Y.; Ferrere, D.; Gonzalez-Sevilla, S.; Hanagaki, K.; Hara, K.; Iacobucci, G.; Ikegami, Y.; Jinnouchi, O.; La Marra, D.; Nakamura, K.; Nishimura, R.; Perrin, E.; Seez, W.; Takubo, Y.; Takashima, R.; Terada, S.; Todome, K.; Unno, Y.; Weber, M.

    2014-04-01

    It is expected that after several years of data-taking, the Large Hadron Collider (LHC) physics programme will be extended to the so-called High-Luminosity LHC, where the instantaneous luminosity will be increased up to 5 × 1034 cm-2 s-1. For the general-purpose ATLAS experiment at the LHC, a complete replacement of its internal tracking detector will be necessary, as the existing detector will not provide the required performance due to the cumulated radiation damage and the increase in the detector occupancy. The baseline layout for the new ATLAS tracker is an all-silicon-based detector, with pixel sensors in the inner layers and silicon micro-strip detectors at intermediate and outer radii. The super-module (SM) is an integration concept proposed for the barrel strip region of the future ATLAS tracker, where double-sided stereo silicon micro-strip modules (DSM) are assembled into a low-mass local support (LS) structure. Mechanical aspects of the proposed LS structure are described.

  2. ATLAS IBL Pixel Upgrade

    NASA Astrophysics Data System (ADS)

    La Rosa, A.; Atlas Ibl Collaboration

    2011-06-01

    The upgrade for ATLAS detector will undergo different phases towards super-LHC. The first upgrade for the Pixel detector will consist of the construction of a new pixel layer which will be installed during the first shutdown of the LHC machine (LHC phase-I upgrade). The new detector, called Insertable B-Layer (IBL), will be inserted between the existing pixel detector and a new (smaller radius) beam-pipe at a radius of 3.3 cm. The IBL will require the development of several new technologies to cope with increase of radiation or pixel occupancy and also to improve the physics performance which will be achieved by reducing the pixel size and of the material budget. Three different promising sensor technologies (planar-Si, 3D-Si and diamond) are currently under investigation for the pixel detector. An overview of the project with particular emphasis on the pixel module is presented in this paper.

  3. Atlas of fatigue curves

    SciTech Connect

    Boyer, H.E.

    1986-01-01

    This Atlas was developed to serve engineers who are looking for fatigue data on a particular metal or alloy. Having these curves compiled in a single book will also facilitate the computerization of the involved data. It is pointed out that plans are under way to make the data in this book available in ASCII files for analysis by computer programs. S-N curves which typify effects of major variables are considered along with low-carbon steels, medium-carbon steels, alloy steels, HSLA steels, high-strength alloy steels, heat-resisting steels, stainless steels, maraging steels, cast irons, and heat-resisting alloys. Attention is also given to aluminum alloys, copper alloys, magnesium alloys, molybdenum, tin alloys, titanium and titanium alloys, zirconium, steel castings, closed-die forgings, powder metallurgy parts, composites, effects of surface treatments, and test results for component parts.

  4. The ATLAS Tile Calorimeter

    SciTech Connect

    Henriques, A.

    2015-07-01

    TileCal is the Hadronic calorimeter covering the most central region of the ATLAS experiment at the LHC. It uses iron plates as absorber and plastic scintillating tiles as the active material. Scintillation light produced in the tiles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs). The resulting electronic signals from the approximately 10000 PMTs are measured and digitised every 25 ns before being transferred to off-detector data-acquisition systems. This contribution will review in a first part the performances of the calorimeter during run 1, obtained from calibration data, and from studies of the response of particles from collisions. In a second part it will present the solutions being investigated for the ongoing and future upgrades of the calorimeter electronics. (authors)

  5. Atlas of Nuclear Isomers

    SciTech Connect

    Jain, Ashok Kumar; Maheshwari, Bhoomika; Garg, Swati; Patial, Monika; Singh, Balraj

    2015-09-15

    We present an atlas of nuclear isomers containing the experimental data for the isomers with a half-life ≥ 10 ns together with their various properties such as excitation-energy, half-life, decay mode(s), spin-parity, energies and multipolarities of emitted gamma transitions, etc. The ENSDF database complemented by the XUNDL database has been extensively used in extracting the relevant data. Recent literature from primary nuclear physics journals, and the NSR bibliographic database have been searched to ensure that the compiled data Table is as complete and current as possible. The data from NUBASE-12 have also been checked for completeness, but as far as possible original references have been cited. Many interesting systematic features of nuclear isomers emerge, some of them new; these are discussed and presented in various graphs and figures. The cutoff date for the extraction of data from the literature is August 15, 2015.

  6. ATLAS strip tracker stavelets

    NASA Astrophysics Data System (ADS)

    Phillips, P. W.

    2012-02-01

    The engineering challenges related to the supply of electrical power to future large scale detector systems are well documented. Two options remain under active study in our community, namely serial powering and the use of DC-DC converters. Whilst clearly different in detail, both have the potential to increase the efficiency of the powering system. The ATLAS Upgrade Strip Tracker Community has constructed two demonstrator stavelets using the ABCN-25 ASIC, each comprising four silicon strip detector modules. The first stavelet is serially powered, using shunt transistors integrated into the ABCN-25 chip to maintain the required operating voltage given a constant supply current, and the second stavelet uses STV-10 DC-DC converters provided by the CERN group. Although the detailed test programme shall continue at CERN, results from stavelet tests made at RAL are presented here.

  7. Consumer Energy Atlas

    SciTech Connect

    Not Available

    1980-06-01

    This first edition of the Atlas provides, in reference form, a central source of information to consumers on key contacts concerned with energy in the US. Energy consumers need information appropriate to local climates and characteristics - best provided by state and local governments. The Department of Energy recognizes the authority of state and local governments to manage energy programs on their own. Therefore, emphasis has been given to government organizations on both the national and state level that influence, formulate, or administer policies affecting energy production, distribution, and use, or that provide information of interest to consumers and non-specialists. In addition, hundreds of non-government energy-related membership organizations, industry trade associations, and energy publications are included.

  8. Design and performance of serial powered single-sided modules within an integrated stave assembly for the ATLAS tracker barrel upgrade

    NASA Astrophysics Data System (ADS)

    Affolder, A.; Carrol, J.; Greenall, A.; Wormald, M.

    2010-12-01

    The design and performance of prototype single-sided modules with ABCN-25 front-end chips and 10x10 cm2 Hamamatsu silicon strip sensors is presented. A low mass module assembly has been achieved by gluing a single-sided flex circuit, with read out chips, directly onto the sensor. The design exploits the embedded shunt regulation within the ABCN-25 providing for a distributed and scalable powered architecture. This allows for multiple modules to be linked together serially to form larger stave structures of up to 12 modules. The stave's digital I/O is realised as a multi-drop LVDS bus flex cable glued to the stave core assembly using a custom receiver/transmitter ASIC (BCC). The results of preliminary electrical tests with 4 module stavelets will be presented.

  9. Large scale digital atlases in neuroscience

    NASA Astrophysics Data System (ADS)

    Hawrylycz, M.; Feng, D.; Lau, C.; Kuan, C.; Miller, J.; Dang, C.; Ng, L.

    2014-03-01

    Imaging in neuroscience has revolutionized our current understanding of brain structure, architecture and increasingly its function. Many characteristics of morphology, cell type, and neuronal circuitry have been elucidated through methods of neuroimaging. Combining this data in a meaningful, standardized, and accessible manner is the scope and goal of the digital brain atlas. Digital brain atlases are used today in neuroscience to characterize the spatial organization of neuronal structures, for planning and guidance during neurosurgery, and as a reference for interpreting other data modalities such as gene expression and connectivity data. The field of digital atlases is extensive and in addition to atlases of the human includes high quality brain atlases of the mouse, rat, rhesus macaque, and other model organisms. Using techniques based on histology, structural and functional magnetic resonance imaging as well as gene expression data, modern digital atlases use probabilistic and multimodal techniques, as well as sophisticated visualization software to form an integrated product. Toward this goal, brain atlases form a common coordinate framework for summarizing, accessing, and organizing this knowledge and will undoubtedly remain a key technology in neuroscience in the future. Since the development of its flagship project of a genome wide image-based atlas of the mouse brain, the Allen Institute for Brain Science has used imaging as a primary data modality for many of its large scale atlas projects. We present an overview of Allen Institute digital atlases in neuroscience, with a focus on the challenges and opportunities for image processing and computation.

  10. Revisiting the membrane interaction mechanism of a membrane-damaging β-barrel pore-forming toxin Vibrio cholerae cytolysin.

    PubMed

    Rai, Anand Kumar; Chattopadhyay, Kausik

    2015-09-01

    Vibrio cholerae cytolysin (VCC) permeabilizes target cell membranes by forming transmembrane oligomeric β-barrel pores. VCC has been shown to associate with the target membranes via amphipathicity-driven spontaneous partitioning into the membrane environment. More specific interaction(s) of VCC with the membrane components have also been documented. In particular, specific binding of VCC with the membrane lipid components is believed to play a crucial role in determining the efficacy of the pore-formation process. However, the structural basis and the functional implications of the VCC interaction with the membrane lipids remain unclear. Here we show that the distinct loop sequences within the membrane-proximal region of VCC play critical roles to determine the functional interactions of the toxin with the membrane lipids. Alterations of the loop sequences via structure-guided mutagenesis allow amphipathicity-driven partitioning of VCC to the membrane lipid bilayer. Alterations of the loop sequences, however, block specific interactions of VCC with the membrane lipids and abort the oligomerization, membrane insertion, pore-formation and cytotoxic activity of the toxin. Present study identifies the structural signatures in VCC implicated for its functional interactions with the membrane lipid components, a process that presumably acts to drive the subsequent steps of the oligomeric β-barrel pore-formation and cytotoxic responses.

  11. Time-course and mechanisms of homeostatic plasticity in layers 2/3 and 5 of the barrel cortex

    PubMed Central

    2017-01-01

    Recent studies have shown that ocular dominance plasticity in layer 2/3 of the visual cortex exhibits a form of homeostatic plasticity that is related to synaptic scaling and depends on TNFα. In this study, we tested whether a similar form of plasticity was present in layer 2/3 of the barrel cortex and, therefore, whether the mechanism was likely to be a general property of cortical neurons. We found that whisker deprivation could induce homeostatic plasticity in layer 2/3 of barrel cortex, but not in a mouse strain lacking synaptic scaling. The time-course of homeostatic plasticity in layer 2/3 was similar to that of L5 regular spiking (RS) neurons (L5RS), but slower than that of L5 intrinsic bursting (IB) neurons (L5IB). In layer 5, the strength of evoked whisker responses and ex vivo miniature excitatory post-synaptic currents (mEPSCs) amplitudes showed an identical time-course for homeostatic plasticity, implying that plasticity at excitatory synapses contacting layer 5 neurons is sufficient to explain the changes in evoked responses. Spontaneous firing rate also showed homeostatic behaviour for L5IB cells, but was absent for L5RS cells over the time-course studied. Spontaneous firing rate homeostasis was found to be independent of evoked response homeostasis suggesting that the two depend on different mechanisms. This article is part of the themed issue ‘Integrating Hebbian and homeostatic plasticity’. PMID:28093546

  12. [Confusing injury findings in a suicidal gunshot fired to the chest from a carbine with a sawed-off barrel].

    PubMed

    Perdekamp, Markus Grosse; Bohnert, Michael; Braunwarth, Roland; Pollak, Stefan

    2006-01-01

    The stellate bullet entrance wound is one of the facultative features of a contact shot. For the formation of a star-shaped wound two factors are of special importance: first, an extensive bony support underlying the skin in the entrance region, and second, a strong propellant charge of the cartridge fired. Contact shots to the precordial region usually do not cause stellate entrance wounds, even if high-powered rifle ammunition is used. In the reported case, an injury pattern was observed that was not in line with normal findings and seemed confusing at first. Following a suicidal gunshot to the chest from a sawed-off carbine 98a (cal. 8 x 57 Js), a 4.5 cm wide, gaping bullet entrance wound with radiating tears was found. Instead of the usual pocket, the anterior thoracic wall showed a fist-sized area of destruction with extensive undermining of the subcutis. Not far from the entrance hole, a rib fragment had become displaced retrogradely thus perforating the skin from the inside out. The unusual pattern of findings could be explained by the fact that the barrel had been sawed off: as a result of this manipulation, a considerable part of the propellant charge had been converted outside the barrel, i.e. in the initial section of the bullet path.

  13. Aβ42 assembles into specific β-barrel pore-forming oligomers in membrane-mimicking environments

    PubMed Central

    Serra-Batiste, Montserrat; Ninot-Pedrosa, Martí; Bayoumi, Mariam; Gairí, Margarida; Maglia, Giovanni; Carulla, Natàlia

    2016-01-01

    The formation of amyloid-β peptide (Aβ) oligomers at the cellular membrane is considered to be a crucial process underlying neurotoxicity in Alzheimer’s disease (AD). Therefore, it is critical to characterize the oligomers that form within a membrane environment. To contribute to this characterization, we have applied strategies widely used to examine the structure of membrane proteins to study the two major Aβ variants, Aβ40 and Aβ42. Accordingly, various types of detergent micelles were extensively screened to identify one that preserved the properties of Aβ in lipid environments—namely the formation of oligomers that function as pores. Remarkably, under the optimized detergent micelle conditions, Aβ40 and Aβ42 showed different behavior. Aβ40 aggregated into amyloid fibrils, whereas Aβ42 assembled into oligomers that inserted into lipid bilayers as well-defined pores and adopted a specific structure with characteristics of a β-barrel arrangement that we named β-barrel pore-forming Aβ42 oligomers (βPFOsAβ42). Because Aβ42, relative to Aβ40, has a more prominent role in AD, the higher propensity of Aβ42 to form βPFOs constitutes an indication of their relevance in AD. Moreover, because βPFOsAβ42 adopt a specific structure, this property offers an unprecedented opportunity for testing a hypothesis regarding the involvement of βPFOs and, more generally, membrane-associated Aβ oligomers in AD. PMID:27621459

  14. Feedforward motor information enhances somatosensory responses and sharpens angular tuning of rat S1 barrel cortex neurons

    PubMed Central

    Khateb, Mohamed; Schiller, Jackie; Schiller, Yitzhak

    2017-01-01

    The primary vibrissae motor cortex (vM1) is responsible for generating whisking movements. In parallel, vM1 also sends information directly to the sensory barrel cortex (vS1). In this study, we investigated the effects of vM1 activation on processing of vibrissae sensory information in vS1 of the rat. To dissociate the vibrissae sensory-motor loop, we optogenetically activated vM1 and independently passively stimulated principal vibrissae. Optogenetic activation of vM1 supra-linearly amplified the response of vS1 neurons to passive vibrissa stimulation in all cortical layers measured. Maximal amplification occurred when onset of vM1 optogenetic activation preceded vibrissa stimulation by 20 ms. In addition to amplification, vM1 activation also sharpened angular tuning of vS1 neurons in all cortical layers measured. Our findings indicated that in addition to output motor signals, vM1 also sends preparatory signals to vS1 that serve to amplify and sharpen the response of neurons in the barrel cortex to incoming sensory input signals. DOI: http://dx.doi.org/10.7554/eLife.21843.001 PMID:28059699

  15. Time-course and mechanisms of homeostatic plasticity in layers 2/3 and 5 of the barrel cortex.

    PubMed

    Glazewski, Stanislaw; Greenhill, Stuart; Fox, Kevin

    2017-03-05

    Recent studies have shown that ocular dominance plasticity in layer 2/3 of the visual cortex exhibits a form of homeostatic plasticity that is related to synaptic scaling and depends on TNFα. In this study, we tested whether a similar form of plasticity was present in layer 2/3 of the barrel cortex and, therefore, whether the mechanism was likely to be a general property of cortical neurons. We found that whisker deprivation could induce homeostatic plasticity in layer 2/3 of barrel cortex, but not in a mouse strain lacking synaptic scaling. The time-course of homeostatic plasticity in layer 2/3 was similar to that of L5 regular spiking (RS) neurons (L5RS), but slower than that of L5 intrinsic bursting (IB) neurons (L5IB). In layer 5, the strength of evoked whisker responses and ex vivo miniature excitatory post-synaptic currents (mEPSCs) amplitudes showed an identical time-course for homeostatic plasticity, implying that plasticity at excitatory synapses contacting layer 5 neurons is sufficient to explain the changes in evoked responses. Spontaneous firing rate also showed homeostatic behaviour for L5IB cells, but was absent for L5RS cells over the time-course studied. Spontaneous firing rate homeostasis was found to be independent of evoked response homeostasis suggesting that the two depend on different mechanisms.This article is part of the themed issue 'Integrating Hebbian and homeostatic plasticity'.

  16. Formation and Degradation of Furfuryl Alcohol, 5-Methylfurfuryl Alcohol, Vanillyl Alcohol, and Their Ethyl Ethers in Barrel-Aged Wines.

    PubMed

    Spillman; Pollnitz; Liacopoulos; Pardon; Sefton

    1998-02-16

    Furfural, 5-methylfurfural, and vanillin co-occurred in 64 barrel-aged red, white, and model wines with the reduction products, furfuryl alcohol, 5-methylfurfuryl alcohol, and vanillyl alcohol, and with the corresponding ethyl ethers of these alcohols. Hydrolytic studies in a model wine have shown that 5-methylfurfuryl ethyl ether is formed rapidly from 5-methylfurfuryl alcohol, but both decomposed quickly under the conditions. Vanillyl ethyl ether was also formed relatively rapidly, and both this ether and vanillyl alcohol were stable in the model wine. The formation of furfuryl ethyl ether from furfuryl alcohol and the subsequent decomposition of these two compounds were comparatively slow. The relative concentration of these aromatic alcohols and ethers in the barrel-aged wines was consistent with the observed stability of the furan derivatives, but low concentrations of vanillyl alcohol and vanillyl ethyl ether observed in all samples showed that factors other than solvolytic degradation were responsible for reducing the concentration of these compounds in wine. Furfuryl ethyl ether, which had an aroma threshold of 430 µg/L in a white wine, was found at approximate concentrations of up to 230 µg/L in the wines.

  17. Perilous proximity: Does the Janzen-Connell hypothesis explain the distribution of giant barrel sponges on a Florida coral reef?

    NASA Astrophysics Data System (ADS)

    Deignan, Lindsey K.; Pawlik, Joseph R.

    2015-06-01

    One popular concept used to explain the high biodiversity of some ecosystems is the Janzen-Connell hypothesis, which states that the distribution of conspecifics is controlled by species-specific pathogens or predators that are attracted to adults or to their reproductive output. The distribution of the affected species would then display a distinct pattern, with survivorship increasing at greater distance from the conspecific adult (negative density dependence), leaving a vacant area around the adult where other species can survive. The giant barrel sponge, Xestospongia muta, is an abundant and long-lived sponge on Caribbean coral reefs that is actively grazed by sponge-eating fishes and is susceptible to disease. We tested the Janzen-Connell hypothesis on barrel sponges on Conch Reef, Florida, by examining their distribution as a function of size using spatial point pattern analyses. Clark and Evans tests and a series of Ripley's K function analyses revealed no consistent distribution pattern, with most analyses resulting in a random pattern of sponge distribution. While predation by sponge-eating fishes has recently been discovered to structure sponge communities on reefs across the Caribbean, these top-down effects do not translate to spatial distributions of X. muta that support Janzen-Connell predictions.

  18. The CMS barrel calorimeter response to particle beams from 2-GeV/c to 350-GeV/c

    SciTech Connect

    Abdullin, S.; Abramov, V.; Acharya, B.; Adam, N.; Adams, M.; Adzic, P.; Akchurin, N.; Akgun, U.; Albayrak, E.; Alemany-Fernandez, R.; Almeida, N.; /Lisbon, LIFEP /Democritos Nucl. Res. Ctr. /Virginia U. /Iowa State U.

    2009-01-01

    The response of the CMS barrel calorimeter (electromagnetic plus hadronic) to hadrons, electrons and muons over a wide momentum range from 2 to 350 GeV/c has been measured. To our knowledge, this is the widest range of momenta in which any calorimeter system has been studied. These tests, carried out at the H2 beam-line at CERN, provide a wealth of information, especially at low energies. The analysis of the differences in calorimeter response to charged pions, kaons, protons and antiprotons and a detailed discussion of the underlying phenomena are presented. We also show techniques that apply corrections to the signals from the considerably different electromagnetic (EB) and hadronic (HB) barrel calorimeters in reconstructing the energies of hadrons. Above 5 GeV/c, these corrections improve the energy resolution of the combined system where the stochastic term equals 84.7 {+-} 1.6% and the constant term is 7.4 {+-} 0.8%. The corrected mean response remains constant within 1.3% rms.

  19. Design and Implementation of the New D0 Level-1 Calorimeter Trigger

    SciTech Connect

    Abolins, M.; Adams, M.; Adams, T.; Aguilo, E.; Anderson, J.; Bagby, L.; Ban, J.; Barberis, E.; Beale, S.; Benitez, J.; Biehl, J.; /Columbia U. /DAPNIA, Saclay /Delhi U. /Fermilab /Florida State U. /Indiana U. /Michigan State U. /Northeastern U. /Rice U. /Southern Methodist U. /University Coll., Dublin

    2007-09-01

    Increasing luminosity at the Fermilab Tevatron collider has led the D0 collaboration to make improvements to its detector beyond those already in place for Run IIa, which began in March 2001. One of the cornerstones of this Run IIb upgrade is a completely redesigned level-1 calorimeter trigger system. The new system employs novel architecture and algorithms to retain high efficiency for interesting events while substantially increasing rejection of background. We describe the design and implementation of the new level-1 calorimeter trigger hardware and discuss its performance during Run IIb data taking. In addition to strengthening the physics capabilities of D0, this trigger system will provide valuable insight into the operation of analogous devices to be used at LHC experiments.

  20. Level 1 Processing of MODIS Direct Broadcast Data at the GSFC DAAC

    NASA Technical Reports Server (NTRS)

    Lynnes, Christopher; Kempler, Steven J. (Technical Monitor)

    2001-01-01

    The GSFC DAAC is working to test and package the MODIS Level 1 Processing software for Aqua Direct Broadcast data. This entails the same code base, but different lookup tables for Aqua and Terra. However, the most significant change is the use of ancillary attitude and ephemeris files instead of orbit/attitude information within the science data stream (as with Terra). In addition, we are working on Linux: ports of the algorithms, which could eventually enable processing on PC clusters. Finally, the GSFC DAAC is also working with the GSFC Direct Readout laboratory to ingest Level 0 data from the GSFC DB antenna into the main DAAC, enabling level 1 production in near real time in support of applications users, such as the Synergy project. The mechanism developed for this could conceivably be extended to other participating stations.

  1. Nimbus 7 Coastal Zone Color Scanner (CZCS). Level 1 data product users' guide

    NASA Technical Reports Server (NTRS)

    Williams, S. P.; Szajna, E. F.; Hovis, W. A.

    1985-01-01

    The coastal zone color scanner (CZCS) is a scanning multispectral radiometer designed specifically for the remote sensing of Ocean Color parameters from an Earth orbiting space platform. A technical manual which is intended for users of NIMBUS 7 CZCS Level 1 data products is presented. It contains information needed by investigators and data processing personnel to operate on the data using digital computers and related equipment.

  2. BOREAS RSS-2 Level-1B ASAS Image Data: At-Sensor Radiance in BSQ Format

    NASA Technical Reports Server (NTRS)

    Russell, C.; Hall, Forrest G. (Editor); Nickeson, Jaime (Editor); Dabney, P. W.; Kovalick, W.; Graham, D.; Bur, Michael; Irons, James R.; Tierney, M.

    2000-01-01

    The BOREAS RSS-2 team used the ASAS instrument, mounted on the NASA C-130 aircraft, to create at-sensor radiance images of various sites as a function of spectral wavelength, view geometry (combinations of view zenith angle, view azimuth angle, solar zenith angle, and solar azimuth angle), and altitude. The level-1b ASAS images of the BOREAS study areas were collected from April to September 1994 and March to July 1996.

  3. Gpm Level 1 Science Requirements: Science and Performance Viewed from the Ground

    NASA Technical Reports Server (NTRS)

    Petersen, W.; Kirstetter, P.; Wolff, D.; Kidd, C.; Tokay, A.; Chandrasekar, V.; Grecu, M.; Huffman, G.; Jackson, G. S.

    2016-01-01

    GPM meets Level 1 science requirements for rain estimation based on the strong performance of its radar algorithms. Changes in the V5 GPROF algorithm should correct errors in V4 and will likely resolve GPROF performance issues relative to L1 requirements. L1 FOV Snow detection largely verified but at unknown SWE rate threshold (likely < 0.5 –1 mm/hr/liquid equivalent). Ongoing work to improve SWE rate estimation for both satellite and GV remote sensing.

  4. Novel β-Barrel Fold in the Nuclear Magnetic Resonance Structure of the Replicase Nonstructural Protein 1 from the Severe Acute Respiratory Syndrome Coronavirus▿

    PubMed Central

    Almeida, Marcius S.; Johnson, Margaret A.; Herrmann, Torsten; Geralt, Michael; Wüthrich, Kurt

    2007-01-01

    The nonstructural protein 1 (nsp1) of the severe acute respiratory syndrome coronavirus has 179 residues and is the N-terminal cleavage product of the viral replicase polyprotein that mediates RNA replication and processing. The specific function of nsp1 is not known. Here we report the nuclear magnetic resonance structure of the nsp1 segment from residue 13 to 128, which represents a novel α/β-fold formed by a mixed parallel/antiparallel six-stranded β-barrel, an α-helix covering one opening of the barrel, and a 310-helix alongside the barrel. We further characterized the full-length 179-residue protein and show that the polypeptide segments of residues 1 to 12 and 129 to 179 are flexibly disordered. The structure is analyzed in a search for possible correlations with the recently reported activity of nsp1 in the degradation of mRNA. PMID:17202208

  5. Development and methodology of level 1 probability safety assessment at PUSPATI TRIGA Reactor

    SciTech Connect

    Maskin, Mazleha; Tom, Phongsakorn Prak; Lanyau, Tonny Anak; Saad, Mohamad Fauzi; Ismail, Ahmad Razali; Abu, Mohamad Puad Haji; Brayon, Fedrick Charlie Matthew; Mohamed, Faizal

    2014-02-12

    As a consequence of the accident at the Fukushima Dai-ichi Nuclear Power Plant in Japan, the safety aspects of the one and only research reactor (31 years old) in Malaysia need be reviewed. Based on this decision, Malaysian Nuclear Agency in collaboration with Atomic Energy Licensing Board and Universiti Kebangsaan Malaysia develop a Level-1 Probability Safety Assessment on this research reactor. This work is aimed to evaluate the potential risks of incidents in RTP and at the same time to identify internal and external hazard that may cause any extreme initiating events. This report documents the methodology in developing a Level 1 PSA performed for the RTP as a complementary approach to deterministic safety analysis both in neutronics and thermal hydraulics. This Level-1 PSA work has been performed according to the procedures suggested in relevant IAEA publications and at the same time numbers of procedures has been developed as part of an Integrated Management System programme implemented in Nuclear Malaysia.

  6. BOREAS RSS-14 Level-1 GOES-7 Visible, IR and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Faysash, David; Cooper, Harry J.; Smith, Eric A.; Newcomer, Jeffrey A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed GOES-7 and -8 images of the BOREAS region as part of its effort to characterize the incoming, reflected, and emitted radiation at regional scales. The level-1 BOREAS GOES-7 image data were collected by RSS-14 personnel at FSU and delivered to BORIS. The data cover the period of 01-Jan-1994 through 08-Jul-1995, with partial to complete coverage on the majority of the days. The data include three bands with eight-bit pixel values. No major problems with the data have been identified. Due to the large size of the images, the level-1 GOES-7 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1 GOES-7 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  7. BOREAS RSS-14 Level-1 GOES-8 Visible, IR and Water Vapor Images

    NASA Technical Reports Server (NTRS)

    Hall, Forrest G. (Editor); Faysash, David; Cooper, Harry J.; Smith, Eric A.; Newcomer, Jeffrey A.

    2000-01-01

    The BOREAS RSS-14 team collected and processed several GOES-7 and GOES-8 image data sets that covered the BOREAS study region. The level-1 BOREAS GOES-8 images are raw data values collected by RSS-14 personnel at FSU and delivered to BORIS. The data cover 14-Jul-1995 to 21-Sep-1995 and 01-Jan-1996 to 03-Oct-1996. The data start out containing three 8-bit spectral bands and end up containing five 10-bit spectral bands. No major problems with the data have been identified. The data are contained in binary image format files. Due to the large size of the images, the level-1 GOES-8 data are not contained on the BOREAS CD-ROM set. An inventory listing file is supplied on the CD-ROM to inform users of what data were collected. The level-1 GOES-8 image data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). See sections 15 and 16 for more information. The data files are available on a CD-ROM (see document number 20010000884).

  8. Comparison of level-1 and level-2 buckling and postbuckling solutions

    NASA Technical Reports Server (NTRS)

    Arbocz, J.

    1992-01-01

    The accuracy of the solutions obtained with the Level-1 computational modules of DISDECO (Delft Interactive Shell Design Code) are investigated by comparing them with solutions obtained with ANILISA, a Level-2 computational module. Whereas the Level-1 solutions are based on the use of trigonometric functions to represent the out-of-plane displacement W and involve Galerkin type approximations to reduce the governing partial differential equations to simple algebraic expressions, the Level-2 solutions employ a truncated Fourier expansion in the circumferential direction and solve the resulting ordinary differential equations forming a nonlinear eigenvalue problem by a Stodola like technique. This involves the numerical integration of the set of ordinary differential equations, which in turn makes it possible to satisfy the specified boundary conditions exactly. It is shown that in many applications the Level-1 predictions concerning the critical buckling load of the perfect structure and its imperfection sensitivity are quite accurate and reliable. For those cases where this is not true, it is shown how the pre and postprocessing facilities of DISDECO can be used efficiently to arrive at a reliable prediction. This involves always the use of the Level-2 computational module ANILISA with its rigorous prebuckling solution and its feature which makes it possible to satisfy the specified boundary conditions exactly.

  9. Liquid Argon Calorimetry for ATLAS

    NASA Astrophysics Data System (ADS)

    Robinson, Alan

    2008-05-01

    This summer, the largest collaborative physics project since the Manhattan project will go online. One of four experiments for the Large Hadron Collider at CERN in Geneva, ATLAS, employs over 2000 people. Canadians have helped design, construct, and calibrate the liquid argon calorimeters for ATLAS to capture the products of the high energy collisions produced by the LHC. From an undergraduate's perspective, explore how these calorimeters are made to handle their harsh requirement. From nearly a billion proton-proton collisions a second, physicists hope to discover the Higgs boson and other new fundamental particles.

  10. ATLAS computing on CSCS HPC

    NASA Astrophysics Data System (ADS)

    Filipcic, A.; Haug, S.; Hostettler, M.; Walker, R.; Weber, M.

    2015-12-01

    The Piz Daint Cray XC30 HPC system at CSCS, the Swiss National Supercomputing centre, was the highest ranked European system on TOP500 in 2014, also featuring GPU accelerators. Event generation and detector simulation for the ATLAS experiment have been enabled for this machine. We report on the technical solutions, performance, HPC policy challenges and possible future opportunities for HEP on extreme HPC systems. In particular a custom made integration to the ATLAS job submission system has been developed via the Advanced Resource Connector (ARC) middleware. Furthermore, a partial GPU acceleration of the Geant4 detector simulations has been implemented.

  11. Argonne's atlas control system upgrade.

    SciTech Connect

    Munson, F.; Quock, D.; Chapin, B.; Figueroa, J.

    1999-09-27

    The ATLAS facility (Argonne Tandem-Linac Accelerator System) is located at the Argonne National Laboratory. The facility is a tool used in nuclear and atomic physics research, which focuses primarily on heavy-ion physics. The accelerator as well as its control system are evolutionary in nature, and consequently, continue to advance. In 1998 the most recent project to upgrade the ATLAS control system was completed. This paper briefly reviews the upgrade, and summarizes the configuration and features of the resulting control system.

  12. ATLAS FTK a - very complex - custom super computer

    NASA Astrophysics Data System (ADS)

    Kimura, N.; ATLAS Collaboration

    2016-10-01

    In the LHC environment for high interaction pile-up, advanced techniques of analysing the data in real time are required in order to maximize the rate of physics processes of interest with respect to background processes. The Fast TracKer (FTK) is a track finding implementation at the hardware level that is designed to deliver full-scan tracks with pT above 1 GeV to the ATLAS trigger system for events passing the Level-1 accept (at a maximum rate of 100 kHz). In order to achieve this performance, a highly parallel system was designed and currently it is being commissioned within in ATLAS. Starting in 2016 it will provide tracks for the trigger system in a region covering the central part of the ATLAS detector, and will be extended to the full detector coverage. The system relies on matching hits coming from the silicon tracking detectors against one billion patterns stored in custom ASIC chips (Associative memory chip - AM06). In a first stage, coarse resolution hits are matched against the patterns and the accepted hits undergo track fitting implemented in FPGAs. Tracks with pT > 1GeV are delivered to the High Level Trigger within about 100 ps. Resolution of the tracks coming from FTK is close to the offline tracking and it will allow for reliable detection of primary and secondary vertexes at trigger level and improved trigger performance for b-jets and tau leptons. This contribution will give an overview of the FTK system and present the status of commissioning of the system. Additionally, the expected FTK performance will be briefly described.

  13. Visualization and process understanding of material behavior in the extrusion barrel during a hot-melt extrusion process using Raman spectroscopy.

    PubMed

    Saerens, Lien; Vervaet, Chris; Remon, Jean-Paul; De Beer, Thomas

    2013-06-04

    The aim of this research was to improve understanding of material behavior in pharmaceutical hot-melt extrusion by implementing a Raman probe in each section of the barrel. Fourier-transform infrared spectroscopy measurements were performed to confirm the Raman observations. Metoprolol tartrate (MPT) concentration (10 and 40% in Eudragit RSPO), extrusion temperature (100, 120, and 140 °C), and screw speed (80 and 160 rpm) were varied to examine their influence on polymer-drug solid state throughout the barrel. When extruding a formulation with a 40% MPT concentration, the broadening of MPT peaks indicates melting of MPT between sections 2 and 3, caused by the first kneading zone. Decreasing the concentration to 10% shows an additional spectral difference (i.e., peak shifts indicating interactions between MPT and the carrier) between sections 5 and 6, due to formation of a solid solution. At a 10% MPT load, increasing the extrusion temperature does not influence the solid state or the barrel section where the final solid state is obtained. At a drug load of 40%, the solid state of the end product is reached further down the barrel when the temperature decreases. Doubling the screw speed when processing a 10% MPT formulation does not affect the solid state of the product or the location where it is obtained. In contrast, at a 40% drug load, the section where the final product is produced, is situated earlier in the barrel, when applying a higher speed. The Raman spectra provide real-time information about polymer-drug behavior throughout the barrel, facilitating process understanding and optimization.

  14. Acoustic and visual remote sensing of barrels of radioactive waste: Application of civilian and military technology to environmental management of the oceans

    SciTech Connect

    Karl, H.A.; Chin, J.L.; Maher, N.M.; Chavez, P.S. Jr.; Ueber, E.; Van Peeters, W.; Curl, H.

    1995-04-01

    As part of an ongoing strategic research project to find barrels of radioactive waste off San Francisco, the U.S. Navy (USN), the U.S. Geological Survey (USGS), and the Gulf of the Farallones National Marine Sanctuary (GFNMS) pooled their expertise, resources, and technology to form a partnership to verify new computer enhancement techniques developed for detecting targets the size of 55 gallon barrels on sidescan sonar images. Between 1946 and 1970, approximately 47,800 large barrels and other containers of radioactive waste were dumped in the ocean west of San Francisco; the containers litter an area of the sea floor of at least 1400 km {sup 2} knows as the Farallon Island Radioactive Waste Dump. The exact location of the containers and the potential hazard the containers pose to the environment is unknown. The USGS developed computer techniques and contracted with private industry to enhance sidescan data, collected in cooperation with the GFNMS, to detect objects as small as 55 gallon steel barrels while conducting regional scale sidescan sonar surveys. Using a subset of the regional sonar survey, images were plotted over a 125 km {sub 2} area. The acoustic interpretations were verified visually using the USN DSV Sea Cliff and the unmanned Advanced Tethered Vehicle (ATV). Barrels and other physical features were found where image enhancement had indicated they would be found. The interagency cooperation among the USN, USGS, and GFNMS has led to develop a cost effective and time efficient method to locate the barrels of radioactive waste. This method has universal application for locating containers of hazardous waste over a regional scale in other ocean areas such as Boston Harbor and the Kara Sea in the Arctic. This successful application of military and civilian expertise and technology has provided scientific information to help formulate policy decisions that affect the environmental management and quality of the ocean.

  15. ATLAS LAr calorimeter performance and LHC Run-2 commissioning

    NASA Astrophysics Data System (ADS)

    Spettel, Fabian

    2016-07-01

    The ATLAS detector was built to study proton-proton collisions produced by the Large Hadron Collider (LHC) at a center of mass energy of up to 14 TeV. The Liquid Argon (LAr) calorimeters are used for all electromagnetic calorimetry as well as the hadronic calorimetry in the endcap and forward regions. They have shown excellent performance during the first LHC data taking campaign, from 2010 to 2012, so-called Run 1, at a peak luminosity of 8 ×1033cm-2s-1. During the next run, peak luminosities of 1.5 ×1034cm-2s-1 and even higher are expected at a 25 ns bunch spacing. Such a high collision rate may have an impact on the quality of the energy reconstruction which is attempted to be maintained at a high level using a calibration procedure described in this contribution. It also poses major challenges to the first level of the trigger system which is constrained to a maximal rate of 100 kHz. For Run-3, scheduled to start in 2019, instantaneous luminosity as high as 3 ×1034cm-2s-1 are foreseen imposing an upgrade of the LAr trigger system to maintain its performance. A demonstrator containing prototypes of the upgraded trigger electronic architecture has been installed on one of the barrel electromagnetic calorimeter readout front end crates to test it during the Run-2 campaign. The new architecture and its benefits for data taking will be discussed below as well as the results from first beam splash events.

  16. Missing Transverse Momentum Trigger Performance Studies for the ATLAS Calorimeter Trigger Upgrades

    NASA Astrophysics Data System (ADS)

    Stamas, Brianna; Parrish, Elliot; Lisi, Luc; Dudley, Christopher; Majewski, Stephanie

    2016-03-01

    The ATLAS Experiment is one of two general purpose detectors at the Large Hadron Collider at CERN in Geneva, Switzerland. In anticipation of discovering new physics, the detector will undergo numerous hardware upgrades including improvements to the Liquid Argon Calorimeter trigger electronics. For the upgrade, one component of the Level-1 trigger system will be the global feature extractor, gFEX, which will house three field programmable gate arrays (FPGAs). Specifically, in order to improve the missing transverse energy (ETmiss)trigger, an adapted topological clustering algorithm is being investigated for implementation on the FPGAs for reconstruction of proton-proton interactions in the ATLAS detector. Using simulated data, this study analyzes the performance of the adapted algorithm in software.

  17. Performance and operation experience of the ATLAS SemiConductor Tracker

    NASA Astrophysics Data System (ADS)

    R-Véronneau, A.

    2014-06-01

    After more than 3 years of successful operation at the LHC, we report on the operation and performance of the SemiConductor Tracker (SCT) functioning in a high luminosity, high radiation environment. The SCT is part of the ATLAS experiment at CERN and is constructed of 4088 silicon detector modules for a total of 6.3 million strips. Each module is designed, constructed and tested to operate as a stand-alone unit, mechanically, electrically, optically and thermally. The modules are mounted into two types of structures: one barrel (4 cylinders) and two end-cap systems (9 disks on each end of the barrel). The SCT silicon micro-strip sensors were produced in the planar p-in-n technology. The signals are processed in the front-end ABCD3TA ASICs, which use a binary readout architecture. Data are transferred to the off-detector readout electronics via optical fibers. We find 99.3% of the SCT modules are operational; noise occupancy and hit efficiency exceed the design specifications; the alignment is very close to the ideal to allow excellent on-line track reconstruction and invariant mass determination. We report on the operation and performance of the detector including an overview of the issues encountered. We confirm the expected observation of significant increases in leakage currents from bulk damage due to non-ionizing radiation and make comparisons with the predictions. We also describe the time evolution of the key parameters of the strip tracker, including the evolution of noise and gain, the measurement of the Lorentz angle and the tracking efficiency in the harsh LHC environment. Valuable lessons for future silicon strip detector projects are presented.

  18. Anatomical Variant of Atlas : Arcuate Foramen, Occpitalization of Atlas, and Defect of Posterior Arch of Atlas

    PubMed Central

    2015-01-01

    Objective We sought to examine anatomic variations of the atlas and the clinical significance of these variations. Methods We retrospectively reviewed 1029 cervical 3-dimensional (3D) CT images. Cervical 3D CT was performed between November 2011 and August 2014. Arcuate foramina were classified as partial or complete and left and/or right. Occipitalization of the atlas was classified in accordance with criteria specified by Mudaliar et al. Posterior arch defects of the atlas were classified in accordance with criteria specified by Currarino et al. Results One hundred and eight vertebrae (108/1029, 10.5%) showed an arcuate foramen. Bilateral arcuate foramina were present in 41 of these vertebrae and the remaining 67 arcuate foramina were unilateral (right 31, left 36). Right-side arcuate foramina were partial on 18 sides and complete on 54 sides. Left-side arcuate foramina were partial on 24 sides and complete on 53 sides. One case of atlas assimilation was found. Twelve patients (12/1029, 1.17%) had a defect of the atlantal posterior arch. Nine of these patients (9/1029, 0.87%) had a type A posterior arch defect. We also identified one type B, one type D, and one type E defect. Conclusion Preoperative diagnosis of occipitalization of the atlas and arcuate foramina using 3D CT is of paramount importance in avoiding neurovascular injury during surgery. It is important to be aware of posterior arch defects of the atlas because they may be misdiagnosed as a fracture. PMID:26819687

  19. The ATLAS Facility at Argonne National Laboratory

    SciTech Connect

    1997-07-01

    The Argonne Tandem Linac Accelerator System (ATLAS) is a superconducting low-energy heavy ion accelerator. Its primary purpose is to provide beams for research in nuclear structure physics. This report begins with a brief history of ATLAS and then describes the current design of the facility. Also summarized are the experimental equipment and research programs. It concludes with a proposal for turning ATLAS into a radioactive beam facility.

  20. ATLAS Inner Detector Event Data Model

    SciTech Connect

    ATLAS; Akesson, F.; Costa, M.J.; Dobos, D.; Elsing, M.; Fleischmann, S.; Gaponenko, A.; Gnanvo, K.; Keener, P.T.; Liebig, W.; Moyse, E.; Salzburger, A.; Siebel, M.; Wildauer, A.

    2007-12-12

    The data model for event reconstruction (EDM) in the Inner Detector of the ATLAS experiment is presented. Different data classes represent evolving stages in the reconstruction data flow, and specific derived classes exist for the sub-detectors. The Inner Detector EDM also extends the data model for common tracking in ATLAS and is integrated into the modular design of the ATLAS high-level trigger and off-line software.

  1. A hardware fast tracker for the ATLAS trigger

    NASA Astrophysics Data System (ADS)

    Asbah, Nedaa

    2016-09-01

    The trigger system of the ATLAS experiment is designed to reduce the event rate from the LHC nominal bunch crossing at 40 MHz to about 1 kHz, at the design luminosity of 1034 cm-2 s-1. After a successful period of data taking from 2010 to early 2013, the LHC already started with much higher instantaneous luminosity. This will increase the load on High Level Trigger system, the second stage of the selection based on software algorithms. More sophisticated algorithms will be needed to achieve higher background rejection while maintaining good efficiency for interesting physics signals. The Fast TracKer (FTK) is part of the ATLAS trigger upgrade project. It is a hardware processor that will provide, at every Level-1 accepted event (100 kHz) and within 100 microseconds, full tracking information for tracks with momentum as low as 1 GeV. Providing fast, extensive access to tracking information, with resolution comparable to the offline reconstruction, FTK will help in precise detection of the primary and secondary vertices to ensure robust selections and improve the trigger performance. FTK exploits hardware technologies with massive parallelism, combining Associative Memory ASICs, FPGAs and high-speed communication links.

  2. Digital atlas for spinal x rays

    NASA Astrophysics Data System (ADS)

    Long, L. Rodney; Pillemer, Stanley R.; Goh, Gin-Hua; Berman, Lewis E.; Neve, Leif; Thoma, George R.; Premkumar, Ahalya; Ostchega, Yechiam; Lawrence, Reva C.; Altman, Roy D.; Lane, Nancy E.; Scott, William W., Jr.

    1997-05-01

    At the National Library of Medicine we are developing a digital atlas to serve as a reference tool for the interpretation of cervical and lumbar spine x-rays. The atlas contains representative images for four grades of severity for cervical/lumbar spondylolisthesis. A prototype version of the atlas has been built using images for which expert rheumatologist readers reached exact agreement in grading. The atlas functionality includes the ability to display cervical and lumbar anatomy, display of single images or multiple simultaneous images, image processing functions, and capability to ad user-defined images to the atlas. Images are selected for display by the user specifying feature and grade. Currently, the atlas runs on a Sun SPARC workstation under the Solaris operating system. THe initial use of the atlas is to aid in reading a collection of 17,000 NHANES II digitized x-rays. The atlas may also be used as a general digital reference tool for the standardized interpretation of digital x-rays for osteoarthritis. We are investigating further development of the atlas to accommodate a wider set of images, to operate on multiple platforms, and to be accessible via the WWW.

  3. Global GIS database; digital atlas of Africa

    USGS Publications Warehouse

    Hearn, P.P.; Hare, T.M.; Schruben, P.; Sherrill, D.; LaMar, C.; Tsushima, P.

    2001-01-01

    This CD-ROM contains a digital atlas of the countries of Africa. This atlas is part of a global database compiled from USGS and other data sources at a nominal scale of 1:1 million and is intended to be used as a regional-scale reference and analytical tool by government officials, researchers, the private sector, and the general public. The atlas includes free GIS software or may be used with ESRI's ArcView software. Customized ArcView tools, specifically designed to make this atlas easier to use, are also included.

  4. Book review: Oklahoma Breeding Bird Atlas

    USGS Publications Warehouse

    Peterjohn, Bruce G.

    2004-01-01

    The first North American breeding bird atlases were initiated during the 1970s. With atlases completed or ongoing in more than 40 U.S. states and most Canadian provinces, these projects are now familiar to professional ornithologists and amateur birders. This book provides the results of the Oklahoma Breeding Bird Atlas, the data for which were collected during 1997–2001. Its appearance less than 3 years after completing fieldwork is remarkable and everyone associated with its timely publication should be congratulated for their efforts.Review info: Oklahoma Breeding Bird Atlas. By Dan L. Reinking, 2004. ISBN: 0806136146, 528 pp.

  5. Commissioning of the ATLAS pixel detector

    SciTech Connect

    ATLAS Collaboration; Golling, Tobias

    2008-09-01

    The ATLAS pixel detector is a high precision silicon tracking device located closest to the LHC interaction point. It belongs to the first generation of its kind in a hadron collider experiment. It will provide crucial pattern recognition information and will largely determine the ability of ATLAS to precisely track particle trajectories and find secondary vertices. It was the last detector to be installed in ATLAS in June 2007, has been fully connected and tested in-situ during spring and summer 2008, and is ready for the imminent LHC turn-on. The highlights of the past and future commissioning activities of the ATLAS pixel system are presented.

  6. Glance Information System for ATLAS Management

    NASA Astrophysics Data System (ADS)

    Grael, F. F.; Maidantchik, C.; Évora, L. H. R. A.; Karam, K.; Moraes, L. O. F.; Cirilli, M.; Nessi, M.; Pommès, K.; ATLAS Collaboration

    2011-12-01

    ATLAS Experiment is an international collaboration where more than 37 countries, 172 institutes and laboratories, 2900 physicists, engineers, and computer scientists plus 700 students participate. The management of this teamwork involves several aspects such as institute contribution, employment records, members' appointment, authors' list, preparation and publication of papers and speakers nomination. Previously, most of the information was accessible by a limited group and developers had to face problems such as different terminology, diverse data modeling, heterogeneous databases and unlike users needs. Moreover, the systems were not designed to handle new requirements. The maintenance has to be an easy task due to the long lifetime experiment and professionals turnover. The Glance system, a generic mechanism for accessing any database, acts as an intermediate layer isolating the user from the particularities of each database. It retrieves, inserts and updates the database independently of its technology and modeling. Relying on Glance, a group of systems were built to support the ATLAS management and operation aspects: ATLAS Membership, ATLAS Appointments, ATLAS Speakers, ATLAS Analysis Follow-Up, ATLAS Conference Notes, ATLAS Thesis, ATLAS Traceability and DSS Alarms Viewer. This paper presents the overview of the Glance information framework and describes the privilege mechanism developed to grant different level of access for each member and system.

  7. A fast atlas pre-selection procedure for multi-atlas based brain segmentation.

    PubMed

    Ma, Jingbo; Ma, Heather T; Li, Hengtong; Ye, Chenfei; Wu, Dan; Tang, Xiaoying; Miller, Michael; Mori, Susumu

    2015-01-01

    Multi-atlas based MR image segmentation has been recognized as a quantitative analysis approach for brain. For such purpose, atlas databases keep increasing to include various anatomical characteristics of human brain. Atlas pre-selection becomes a necessary step for efficient and accurate automated segmentation of human brain images. In this study, we proposed a method of atlas pre-selection for target image segmentation on the MriCloud platform, which is a state-of-the-art multi-atlas based segmentation tool. In the MRIcloud pipeline, segmentation of lateral ventricle (LV) label is generated as an additional input in the segmentation pipeline. Under this circumstance, similarity of the LV label between target image and atlases was adopted as the atlas ranking scheme. Dice overlap coefficient was calculated and taken as the quantitative measure for atlas ranking. Segmentation results based on the proposed method were compared with that based on atlas pre-selection by mutual information (MI) between images. The final segmentation results showed a comparable accuracy of the proposed method with that from MI based atlas pre-selection. However, the computation load for the atlas pre-selection was speeded up by about 20 times compared to MI based pre-selection. The proposed method provides a promising assistance for quantitative analysis of brain images.

  8. Event selection services in ATLAS

    NASA Astrophysics Data System (ADS)

    Cranshaw, J.; Cuhadar-Donszelmann, T.; Gallas, E.; Hrivnac, J.; Kenyon, M.; McGlone, H.; Malon, D.; Mambelli, M.; Nowak, M.; Viegas, F.; Vinek, E.; Zhang, Q.

    2010-04-01

    ATLAS has developed and deployed event-level selection services based upon event metadata records ("TAGS") and supporting file and database technology. These services allow physicists to extract events that satisfy their selection predicates from any stage of data processing and use them as input to later analyses. One component of these services is a web-based Event-Level Selection Service Interface (ELSSI). ELSSI supports event selection by integrating run-level metadata, luminosity-block-level metadata (e.g., detector status and quality information), and event-by-event information (e.g., triggers passed and physics content). The list of events that survive after some selection criterion is returned in a form that can be used directly as input to local or distributed analysis; indeed, it is possible to submit a skimming job directly from the ELSSI interface using grid proxy credential delegation. ELSSI allows physicists to explore ATLAS event metadata as a means to understand, qualitatively and quantitatively, the distributional characteristics of ATLAS data. In fact, the ELSSI service provides an easy interface to see the highest missing ET events or the events with the most leptons, to count how many events passed a given set of triggers, or to find events that failed a given trigger but nonetheless look relevant to an analysis based upon the results of offline reconstruction, and more. This work provides an overview of ATLAS event-level selection services, with an emphasis upon the interactive Event-Level Selection Service Interface.

  9. Pictorial Atlas of the Netherlands.

    ERIC Educational Resources Information Center

    Information and Documentation Centre for the Geography of the Netherlands, Utrecht.

    The atlas contains almost 40 photographs and 40 maps of geographical aspects of the Netherlands: the coast, dikes, canals, towns, and farmland. Each page contains a photograph, a section of a map showing the area in which the photograph was taken, and a discussion of several paragraphs about the geographical problems of the area and how they have…

  10. Atlas of the African Child.

    ERIC Educational Resources Information Center

    Patel, Mahesh, Ed.

    Using data primarily from United Nations Statistical Yearbooks, but from other sources as well, this Atlas provides an overview, in graphical form, of issues affecting children in Africa. Some of the issues covered, such as immunization, affect children directly. Others, such as economic progress, are included because they form part of the…

  11. Atlas Transmission Line Breakdown Analysis

    DTIC Science & Technology

    1999-06-01

    The Atlas facility will use 24 radially converging, vertically oriented and tapered, oil insulated, triplate transmission lines between the Marx ...taper from a height of 1.75 m at the Marx end to 0.32 m at the output end. The aluminum conductors, held together by 20 insulating spacers, are

  12. A quantitative Kirkpatrick Level 1 and 2 study of equipment specialist apprentice operations training

    NASA Astrophysics Data System (ADS)

    Hughes, Dirk D.

    The primary purpose of the quantitative experimental study is to compare employee-learning outcomes for a course of study that is offered in two formats: explicit and tacit instructor led and explicit e-learning operations training. A Kirkpatrick Level 2 course examination is used to establish a pretest knowledge baseline and to measure posttest learning outcomes for each instructional format. A secondary purpose is to compare responses of the two groups using a Kirkpatrick Level 1 customer satisfaction index survey. Several authors reported the United States electric utility industry would have an employee attrition issue during the 2010 through 2015 period. This is at the same time the industry will be experiencing an increased demand for electricity. There now is a demand for highly training powerplant operators. A review of literature yielded few studies comparing instructor led training and e-based training. Though the Electric Power Research Institute stated the two training modes would be acceptable instruction, the organization did not develop a quantifiable justified recommendation as to the training. Subjects participated in a basic operations course and decided to take either the instructor led or e-based training course. Results of the study concluded that both instructor led and e-based training provided significant learning to the participants. The Kirkpatrick Level 1 results indicated significantly better results for instructor led training. There was not a significant difference in the Kirkpatrick Level 2 results between the two training modalities. Recommendation for future research include conducting a quantitative studies including a Phillips Level 5 study and qualitative studies including a more detailed examination of the customer satisfaction survey (Kirkpatrick Level 1).

  13. Creating a Patient and Family Advisory Council at a level 1 trauma center.

    PubMed

    Willis, Reda; Krichten, Amy; Eldredge, Kelli; Carney, Daniel

    2013-01-01

    Partnering with patients and families through a Patient and Family Advisory Council (PFAC) provides the opportunities to improve health care quality and safety. PFAC is a well-defined group of patients, families, and staff members who meet on a regular basis to ensure that patient's experiences, points of view, and recommendations are identified and shared with the organization. In fall 2010, at our level 1 trauma center, Trauma Services collaborated with the trauma nursing staff to formulate our first trauma-related PFAC.

  14. Level 1 environmental assessment of cupola emissions at the Tioga Foundry

    SciTech Connect

    Menzies, K.T.; Adams, J.W.; Thrun, K.E.

    1984-01-01

    Sampling and analysis was undertaken to characterize and quantify particulate, organic and inorganic chemical concentrations in gaseous effluents downstream of an afterburner (AFB) or stack air addition (SAA) system in a cupola at the Tioga Casting Company in Owego, New York. The US Environmental Protection Agency/Industrial Environmental Research Laboratory (EPA/IERL) Level 1 environmental assessment procedures were used to determine if the level of pollutants present differed when using the AFB versus the SAA control device for reduction of carbon monoxide (CO) concentrations.

  15. Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI.

    PubMed

    Wu, Dan; Ma, Ting; Ceritoglu, Can; Li, Yue; Chotiyanonta, Jill; Hou, Zhipeng; Hsu, John; Xu, Xin; Brown, Timothy; Miller, Michael I; Mori, Susumu

    2016-01-15

    Technologies for multi-atlas brain segmentation of T1-weighted MRI images have rapidly progressed in recent years, with highly promising results. This approach, however, relies on a large number of atlases with accurate and consistent structural identifications. Here, we introduce our atlas inventories (n=90), which cover ages 4-82years with unique hierarchical structural definitions (286 structures at the finest level). This multi-atlas library resource provides the flexibility to choose appropriate atlases for various studies with different age ranges and structure-definition criteria. In this paper, we describe the details of the atlas resources and demonstrate the improved accuracy achievable with a dynamic age-matching approach, in which atlases that most closely match the subject's age are dynamically selected. The advanced atlas creation strategy, together with atlas pre-selection principles, is expected to support the further development of multi-atlas image segmentation.

  16. The Molecular Atlas Project

    NASA Astrophysics Data System (ADS)

    Silverberg, Jesse; Yin, Peng

    The promise of super-resolution microscopy is a technology to discover new biological mechanisms that occur at smaller length scales then previously observable. However, with higher-resolution, we generally lose the larger spatial context of the image itself. The Molecular Atlas Project (MAP) directly asks how these competing interests between super-resolution imaging and broader spatially contextualized information can be reconciled. MAP enables us to acquire, visualize, explore, and annotate proteomic image data representing 7 orders of magnitude in length ranging from molecular (nm) to tissue (cm) scales. This multi-scale understanding is made possible by combining multiplexed DNA-PAINT, a DNA nanotechnology approach to super-resolution imaging, with ``big-data'' strategies for information management and image visualization. With these innovations combined, MAP enables us to explore cell-specific heterogeneity in ductal carcinoma for every cellin a cm-sized tissue section, analyze organoid growth for advances in high-throughput tissue-on-a-chip technology, and examine individual synapses for connectome mapping over extremely wide areas. Ultimately, MAP is a fundamentally new way to interact with multiscale biophysical data.

  17. Environmental assessment: US Department of Energy's financial incentives for production of 60,000 barrels per dya of ethanol

    SciTech Connect

    Not Available

    1981-01-01

    This document is an environmental assessment (EA) of the Department of Energy's Financial Incentives Program for Production of 60,000 barrels per day (B/D) of ethanol for use as a transportation fuel when blended with gasoline. Its purpose is to evaluate all phases of ethanol production and compare program alternatives to ensure that environmental effects are considered at the earliest meaningful point in the decision-making process, to determine the need for a programmatic environmental impact statement (EIS), and to provide an information base for the preparation of site-specific EA's and EIS's if these are necessary. Based on the findings of this environmental assessment, it is expected that the production and use of 60,000 B/D of ethanol should produce no major environmental effects. Environmental residuals, health and safety concerns, and institutional issues associated with the conversion, distribution, and end use of ethanol are discussed.

  18. Bad apples, bad cases, and bad barrels: meta-analytic evidence about sources of unethical decisions at work.

    PubMed

    Kish-Gephart, Jennifer J; Harrison, David A; Treviño, Linda Klebe

    2010-01-01

    As corporate scandals proliferate, practitioners and researchers alike need a cumulative, quantitative understanding of the antecedents associated with unethical decisions in organizations. In this meta-analysis, the authors draw from over 30 years of research and multiple literatures to examine individual ("bad apple"), moral issue ("bad case"), and organizational environment ("bad barrel") antecedents of unethical choice. Findings provide empirical support for several foundational theories and paint a clearer picture of relationships characterized by mixed results. Structural equation modeling revealed the complexity (multidetermined nature) of unethical choice, as well as a need for research that simultaneously examines different sets of antecedents. Moderator analyses unexpectedly uncovered better prediction of unethical behavior than of intention for several variables. This suggests a need to more strongly consider a new "ethical impulse" perspective in addition to the traditional "ethical calculus" perspective. Results serve as a data-based foundation and guide for future theoretical and empirical development in the domain of behavioral ethics.

  19. The Outer Membrane Protein OmpW Forms an Eight-Stranded beta-Barrel with a Hydrophobic Channel

    SciTech Connect

    Hong,H.; Patel, D.; Tamm, L.; van den Berg, B.

    2006-01-01

    Escherichia coli OmpW belongs to a family of small outer membrane (OM) proteins that are widespread in Gram-negative bacteria. Their functions are unknown, but recent data suggest that they may be involved in the protection of bacteria against various forms of environmental stress. In order to gain insight into the function of these proteins we have determined the crystal structure of Escherichia coli OmpW to 2.7 Angstroms resolution. The structure shows that OmpW forms an eight-stranded beta-barrel with a long and narrow hydrophobic channel that contains a bound LDAO detergent molecule. Single channel conductance experiments show that OmpW functions as an ion channel in planar lipid bilayers. The channel activity can be blocked by the addition of LDAO. Taken together, the data suggest that members of the OmpW family could be involved in the transport of small hydrophobic molecules across the bacterial OM.

  20. Transcriptome response to infraorbital nerve transection in the gonadally intact male rat barrel cortex: RNA-seq.

    PubMed

    Orczyk, John J; Sethia, Rishabh; Doster, Dominique; Garraghty, Preston E

    2016-01-01

    The effects of infraorbital nerve (ION) transection on gene expression in the adult male rat barrel cortex were investigated using RNA sequencing. After a 24-hour survival duration, 98 genes were differentially regulated by ION transection. Differentially expressed genes suggest changes in neuronal activity, excitability, and morphology. The production of mRNA for neurotrophins, including brain-derived neurotrophin factor (BNDF), was decreased following ION transection. Several potassium channels showed decreased mRNA production, whereas a sodium channel (Na(V)β4) associated with burst firing showed increased mRNA production. The results may have important implications for phantom-limb pain and complex regional pain syndrome. Future experiments should determine the extent to which changes in RNA result in changes in protein expression, in addition to utilizing laser capture microdissection techniques to differentiate between neuronal and glial cells.