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Sample records for attenuated vector tomography

  1. Attenuated Vector Tomography -- An Approach to Image Flow Vector Fields with Doppler Ultrasonic Imaging

    SciTech Connect

    Huang, Qiu; Peng, Qiyu; Huang, Bin; Cheryauka, Arvi; Gullberg, Grant T.

    2008-05-15

    The measurement of flow obtained using continuous wave Doppler ultrasound is formulated as a directional projection of a flow vector field. When a continuous ultrasound wave bounces against a flowing particle, a signal is backscattered. This signal obtains a Doppler frequency shift proportional to the speed of the particle along the ultrasound beam. This occurs for each particle along the beam, giving rise to a Doppler velocity spectrum. The first moment of the spectrum provides the directional projection of the flow along theultrasound beam. Signals reflected from points further away from the detector will have lower amplitude than signals reflected from points closer to the detector. The effect is very much akin to that modeled by the attenuated Radon transform in emission computed tomography.A least-squares method was adopted to reconstruct a 2D vector field from directional projection measurements. Attenuated projections of only the longitudinal projections of the vector field were simulated. The components of the vector field were reconstructed using the gradient algorithm to minimize a least-squares criterion. This result was compared with the reconstruction of longitudinal projections of the vector field without attenuation. Ifattenuation is known, the algorithm was able to accurately reconstruct both components of the full vector field from only one set of directional projection measurements. A better reconstruction was obtained with attenuation than without attenuation implying that attenuation provides important information for the reconstruction of flow vector fields.This confirms previous work where we showed that knowledge of the attenuation distribution helps in the reconstruction of MRI diffusion tensor fields from fewer than the required measurements. In the application of ultrasound the attenuation distribution is obtained with pulse wave transmission computed tomography and flow information is obtained with continuous wave Doppler.

  2. Attenuated Vesicular Stomatitis Viruses as Vaccine Vectors

    PubMed Central

    Roberts, Anjeanette; Buonocore, Linda; Price, Ryan; Forman, John; Rose, John K.

    1999-01-01

    We showed previously that a single intranasal vaccination of mice with a recombinant vesicular stomatitis virus (VSV) expressing an influenza virus hemagglutinin (HA) protein provided complete protection from lethal challenge with influenza virus (A. Roberts, E. Kretzschmar, A. S. Perkins, J. Forman, R. Price, L. Buonocore, Y. Kawaoka, and J. K. Rose, J. Virol. 72:4704–4711, 1998). Because some pathogenesis was associated with the vector itself, in the present study we generated new VSV vectors expressing HA which are completely attenuated for pathogenesis in the mouse model. The first vector has a truncation of the cytoplasmic domain of the VSV G protein and expresses influenza virus HA (CT1-HA). This nonpathogenic vector provides complete protection from lethal influenza virus challenge after intranasal administration. A second vector with VSV G deleted and expressing HA (ΔG-HA) is also protective and nonpathogenic and has the advantage of not inducing neutralizing antibodies to the vector itself. PMID:10196265

  3. Ultrasound transmission attenuation tomography using energy-scaled amplitude ratios

    NASA Astrophysics Data System (ADS)

    Chen, Ting; Shin, Junseob; Huang, Lianjie

    2016-04-01

    Ultrasound attenuation of breast tumors is related to their types and pathological states, and can be used to detect and characterize breast cancer. Particularly, ultrasound scattering attenuation can infer the margin properties of breast tumors. Ultrasound attenuation tomography quantitatively reconstructs the attenuation properties of the breast. Our synthetic-aperture breast ultrasound tomography system with two parallel transducer arrays records both ultrasound reflection and transmission signals. We develop an ultrasound attenuation tomography method using ultrasound energy-scaled amplitude decays of ultrasound transmission signals and conduct ultrasound attenuation tomography using a known sound-speed model. We apply our ultrasound transmission attenuation tomography method to a breast phantom dataset, and compare the ultrasound attenuation tomography results with conventional beamforming ultrasound images obtained using reflection signals. We show that ultrasound transmission attenuation tomography complements beamforming images in identifying breast lesions.

  4. Attenuation Tomography of the Upper Mantle

    NASA Astrophysics Data System (ADS)

    Adenis, A.; Debayle, E.; Ricard, Y. R.

    2014-12-01

    We present a 3-D model of surface wave attenuation in the upper mantle. The model is constrained by a large data set of fundamental and higher Rayleigh mode observations. This data set consists of about 1,800,000 attenuation curves measured in the period range 50-300s by Debayle and Ricard (2012). A careful selection allows us to reject data for which measurements are likely biased by the poor knowledge of the scalar seismic moment or by a ray propagation too close to a node of the source radiation pattern. For each epicenter-station path, elastic focusing effects due to seismic heterogeneities are corrected using DR2012 and the data are turned into log(1/Q). The selected data are then combined in a tomographic inversion using the non-linear least square formalism of Tarantola and Valette (1982). The obtained attenuation maps are in agreement with the surface tectonic for periods and modes sensitive to the top 200km of the upper mantle. Low attenuation regions correlate with continental shields while high attenuation regions are located beneath young oceanic regions. The attenuation pattern becomes more homogeneous at depths greater than 200 km and the maps are dominated by a high quality factor signature beneath slabs. We will discuss the similarities and differences between the tomographies of seismic velocities and of attenuations.

  5. Attenuation compensation for optical coherence tomography imaging

    NASA Astrophysics Data System (ADS)

    Chang, Shoude; Flueraru, Costel; Mao, Youxin; Sherif, Sherif

    2009-12-01

    Optical coherence tomography (OCT) is a noninvasive technique that provides micrometer-scale imaging of tissue. As most biological tissues are considered turbid, it causes attenuation of the OCT signal and limits the depth penetration. Although a few algorithms had been developed to compensate the attenuation, almost all of them need to extract the scattering parameters before doing the compensation procedure. Because the real biological samples are anisotropic and multilayer-like structure, it is not time-efficient to model and solve these scattering parameters. This paper introduces a new method to compensate the OCT signal attenuation in depth. By analyzing the input signal, a compensation function is adaptively derived for each A-scan line, which can be used effectively to compensate the energy loss in the large sections and enhance the details in the deep, dark-like areas. Three bio-samples, a piece of onion, a Poecilia Wingei fish and a piece of rabbit abdominal aorta, were used to test our method. OCT images obtained by a swept-source OCT system were processed by the proposed method. Results show the visualization of structures in OCT images has been evidently improved, especially in deep region.

  6. Attenuated Measles Virus as a Vaccine Vector

    PubMed Central

    Zuniga, Armando; Wang, ZiLi; Liniger, Matthias; Hangartner, Lars; Caballero, Michael; Pavlovic, Jovan; Wild, Peter; Viret, Jean Francois; Glueck, Reinhard; Billeter, Martin A.; Naim, Hussein Y.

    2013-01-01

    Live attenuated measles virus (MV) vaccines have an impressive record of safety, efficacy and ability to induce life-long immunity against measles infection. Using reverse genetics technology, such negative-strand RNA viruses can now be rescued from cloned DNA. This technology allows the insertion of exogenous genes encoding foreign antigens into the MV genome in such a way that they can be expressed by the MV vaccine strain, without affecting virus structure, propagation and cell targeting. Recombinant viruses rescued from cloned cDNA induce immune responses against both measles virus and the cloned antigens. The tolerability of MV to gene(s) insertion makes it an attractive flexible vector system, especially if broad immune responses are required. The fact that measles replication strictly occurs in the cytoplasm of infected cells without DNA intermediate has important biosafety implications and adds to the attractiveness of MV as a vector. In this article we report the characteristics of reporter gene expression (GFP, LacZ and CAT) and the biochemical, biophysical and immunological properties of recombinant MV expressing heterologous antigens of simian immunogeficiency virus (SIV). PMID:17303293

  7. Frequency-domain ultrasound waveform tomography breast attenuation imaging

    NASA Astrophysics Data System (ADS)

    Sandhu, Gursharan Yash Singh; Li, Cuiping; Roy, Olivier; West, Erik; Montgomery, Katelyn; Boone, Michael; Duric, Neb

    2016-04-01

    Ultrasound waveform tomography techniques have shown promising results for the visualization and characterization of breast disease. By using frequency-domain waveform tomography techniques and a gradient descent algorithm, we have previously reconstructed the sound speed distributions of breasts of varying densities with different types of breast disease including benign and malignant lesions. By allowing the sound speed to have an imaginary component, we can model the intrinsic attenuation of a medium. We can similarly recover the imaginary component of the velocity and thus the attenuation. In this paper, we will briefly review ultrasound waveform tomography techniques, discuss attenuation and its relations to the imaginary component of the sound speed, and provide both numerical and ex vivo examples of waveform tomography attenuation reconstructions.

  8. Yellowstone Attenuation Tomography from Ambient Seismic Noise

    NASA Astrophysics Data System (ADS)

    Doungkaew, N.; Seats, K.; Lawrence, J. F.

    2013-12-01

    The goal of this study is to create a tomographic attenuation image for the Yellowstone region by analyzing ambient seismic noise. An attenuation image generated from ambient noise should provide more information about the structure and properties beneath Yellowstone, especially the caldera, which is known to be active. I applied the method of Lawrence & Prieto [2011] to examine lateral variations in the attenuation structure of Yellowstone. Ambient noise data were collected from broadband seismic stations located around Yellowstone National Park from 1999-2013. Noise correlation functions derived from cross correlations of the ambient noise at two stations were used to calculate a distance dependent decay (an attenuation coefficient) at each period and distance. An inversion was then performed to isolate and localize the spatial attenuation coefficients within the study area. I observe high amplitude decay of the ambient noise at the Yellowstone caldera, most likely due to elevated temperature and crustal melts caused by volcanism, geothermal heat flow, and hydrothermal activity such as geysers.

  9. New Results from WOMBAT: Seismic Attenuation Tomography in Southeast Australia

    NASA Astrophysics Data System (ADS)

    Pozgay, S.; Rawlinson, N.; Nayak, A.

    2011-12-01

    New work using data from Australia's WOMBAT array (~600 3-component short-period seismic stations with spacings of 15-50 km) has focused on differential attenuation tomography. We extend prior travel time tomography studies to utilise amplitude data for analysis of the attenuation structure of the lithosphere and upper mantle. We modify the adaptive stacking code of Rawlinson & Kennett (2004) to include frequency-dependent differential δt* attenuation measurements. The method appears to work well with the short-period WOMBAT data, as coherent patterns of δt* are observed for many events. The main advantage of using adaptive stacking is that a large volume of data becomes usable that otherwise has a low signal-to-noise ratio. Analysis of teleseismic P waves recorded mainly from earthquakes in the surrounding subduction zones shows good structural coherency with travel time tomography. We aim to build a comprehensive picture of the attenuation structure of the southeastern portion of Australian continental lithosphere (a region ~1.5x bigger than the area of Texas). Initial results from Southeast Tasmania with high resolution down to >100 km depth clearly delineate the Tamar Fracture System, separating the East and West Tasmanian Terranes. Furthermore, we hope to provide direct comparison and integrative interpretation with travel time anomalies and anisotropy measurements.

  10. Simultaneous inversion for velocity and attenuation by waveform tomography

    NASA Astrophysics Data System (ADS)

    Gao, Fengxia; Wang, Yanghua

    2016-08-01

    Seismic waveform tomography can invert for the velocity and attenuation (Q- 1) variations simultaneously. For this simultaneous inversion, we propose two strategies for waveform tomography. First, we analyze the contributions of the real part and the imaginary part of the gradients, associated with the velocity and attenuation parameters respectively, and determine that the combination of the real part of the gradient subvector for the velocity parameter and the imaginary part of the gradient subvector for the attenuation parameter would produce an optimal inversion result. Second, we attempt to balance the sensitivities of the objective function to the velocity and the attenuation parameters. Considering the magnitude differences between these two-type parameters in the simultaneous inversion, we apply preliminarily a normalization to both the velocity model and the attenuation model. However, for balancing their sensitivities, we further adjust the corresponding model updates using a tuning factor. We determine this tuning parameter adaptively, based on the sensitivities of these two parameters, at each iteration. Numerical tests demonstrate the feasibility and reliability of these two strategies in full waveform inversion.

  11. Radar attenuation tomography using the centroid frequency downshift method

    USGS Publications Warehouse

    Liu, L.; Lane, J.W.; Quan, Y.

    1998-01-01

    A method for tomographically estimating electromagnetic (EM) wave attenuation based on analysis of centroid frequency downshift (CFDS) of impulse radar signals is described and applied to cross-hole radar data. The method is based on a constant-Q model, which assumes a linear frequency dependence of attenuation for EM wave propagation above the transition frequency. The method uses the CFDS to construct the projection function. In comparison with other methods for estimating attenuation, the CFDS method is relatively insensitive to the effects of geometric spreading, instrument response, and antenna coupling and radiation pattern, but requires the data to be broadband so that the frequency shift and variance can be easily measured. The method is well-suited for difference tomography experiments using electrically conductive tracers. The CFDS method was tested using cross-hole radar data collected at the U.S. Geological Survey Fractured Rock Research Site at Mirror Lake, New Hampshire (NH) during a saline-tracer injection experiment. The attenuation-difference tomogram created with the CFDS method outlines the spatial distribution of saline tracer within the tomography plane. ?? 1998 Elsevier Science B.V. All rights reserved.

  12. SINGLE-PHOTON EMISSION COMPUTED TOMOGRAPHY: COMPENSATION FOR CONSTANT ATTENUATION

    SciTech Connect

    Gullberg, Grant T.; Budinger, Thomas F.

    1980-06-01

    A back-projection of filtered projection (BKFIL) reconstruction algorithm is presented that is applicable to single-photon emission computed tomography (ECT) in the presence of a constant attenuating medium such as the brain. The filters used in transmission computed tomography (TCT) - comprised of a ramp multiplied by window functions - are modified so that the single-photon ECT filter is a function of the constant attenuation coefficient. The filters give good reconstruction results with sufficient angular and lateral sampling. With continuous samples the BKFIL algorithm has a point spread function that is the Hankel transform of the window function. The resolution and s tistical properties of the filters are demonstrated by various simulations. Statistical formulas for the reconstructed image show that the square of the percent-root-mean square uncertainty (%RMS) of the reconstruction is inversely proportional to the total measured counts. The results indicate that constant attenuation can be compensated for in single-photon ECT by using an attenuation-dependent filter that reconstructs the transverse section reliably. Computer time requirements are two times that of conventional TCT or positron ECT and there is no increase in memory requirements.

  13. Inverse problems of ultrasound tomography in models with attenuation

    NASA Astrophysics Data System (ADS)

    Goncharsky, Alexander V.; Romanov, Sergey Y.

    2014-04-01

    We develop efficient methods for solving inverse problems of ultrasound tomography in models with attenuation. We treat the inverse problem as a coefficient inverse problem for unknown coordinate-dependent functions that characterize both the speed cross section and the coefficients of the wave equation describing attenuation in the diagnosed region. We derive exact formulas for the gradient of the residual functional in models with attenuation, and develop efficient algorithms for minimizing the gradient of the residual by solving the conjugate problem. These algorithms are easy to parallelize when implemented on supercomputers, allowing the computation time to be reduced by a factor of several hundred compared to a PC. The numerical analysis of model problems shows that it is possible to reconstruct not only the speed cross section, but also the properties of the attenuating medium. We investigate the choice of the initial approximation for iterative algorithms used to solve inverse problems. The algorithms considered are primarily meant for the development of ultrasound tomographs for differential diagnosis of breast cancer.

  14. Inverse problems of ultrasound tomography in models with attenuation.

    PubMed

    Goncharsky, Alexander V; Romanov, Sergey Y

    2014-04-21

    We develop efficient methods for solving inverse problems of ultrasound tomography in models with attenuation. We treat the inverse problem as a coefficient inverse problem for unknown coordinate-dependent functions that characterize both the speed cross section and the coefficients of the wave equation describing attenuation in the diagnosed region. We derive exact formulas for the gradient of the residual functional in models with attenuation, and develop efficient algorithms for minimizing the gradient of the residual by solving the conjugate problem. These algorithms are easy to parallelize when implemented on supercomputers, allowing the computation time to be reduced by a factor of several hundred compared to a PC. The numerical analysis of model problems shows that it is possible to reconstruct not only the speed cross section, but also the properties of the attenuating medium. We investigate the choice of the initial approximation for iterative algorithms used to solve inverse problems. The algorithms considered are primarily meant for the development of ultrasound tomographs for differential diagnosis of breast cancer. PMID:24694653

  15. Ultrasound attenuation computed tomography assessment of PAGAT gel dose

    NASA Astrophysics Data System (ADS)

    Khoei, S.; Trapp, J. V.; Langton, C. M.

    2014-08-01

    Ultrasound has been previously investigated as an alternative readout method for irradiated polymer gel dosimeters, with authors reporting varying dose responses. We extend previous work utilizing a new computed tomography ultrasound scanner comprising of two identical 5 MHz, 128-element linear-array ultrasound transducers, co-axially aligned and submerged in water as a coupling agent, with rotational of the gel dosimeter between the transducers facilitated by a robotic arm. We have investigated the dose-dependence of both ultrasound bulk attenuation and broadband ultrasound attenuation (BUA) for the PAGAT gel dosimeter. The ultrasound bulk attenuation dose sensitivity was found to be 1.46  ±  0.04 dB m -1 Gy -1, being in agreement with previously published results for PAG and MAGIC gels. BUA was also found to be dose dependent and was measured to be 0.024  ±  0.003 dB MHz -1 Gy -1 the advantage of BUA being its insensitivity to frequency-independent attenuation mechanisms including reflection and refraction, thereby minimizing image reconstruction artefacts.

  16. Inverse problems of ultrasound tomography in models with attenuation.

    PubMed

    Goncharsky, Alexander V; Romanov, Sergey Y

    2014-04-21

    We develop efficient methods for solving inverse problems of ultrasound tomography in models with attenuation. We treat the inverse problem as a coefficient inverse problem for unknown coordinate-dependent functions that characterize both the speed cross section and the coefficients of the wave equation describing attenuation in the diagnosed region. We derive exact formulas for the gradient of the residual functional in models with attenuation, and develop efficient algorithms for minimizing the gradient of the residual by solving the conjugate problem. These algorithms are easy to parallelize when implemented on supercomputers, allowing the computation time to be reduced by a factor of several hundred compared to a PC. The numerical analysis of model problems shows that it is possible to reconstruct not only the speed cross section, but also the properties of the attenuating medium. We investigate the choice of the initial approximation for iterative algorithms used to solve inverse problems. The algorithms considered are primarily meant for the development of ultrasound tomographs for differential diagnosis of breast cancer.

  17. Optical coherence tomography for blood glucose monitoring through signal attenuation

    NASA Astrophysics Data System (ADS)

    De Pretto, Lucas R.; Yoshimura, Tania M.; Ribeiro, Martha S.; de Freitas, Anderson Z.

    2016-03-01

    Development of non-invasive techniques for glucose monitoring is crucial to improve glucose control and treatment adherence in patients with diabetes. Hereafter, Optical Coherence Tomography (OCT) may offer a good alternative for portable glucometers, since it uses light to probe samples. Changes in the object of interest can alter the intensity of light returning from the sample and, through it, one can estimate the sample's attenuation coefficient (μt) of light. In this work, we aimed to explore the behavior of μt of mouse's blood under increasing glucose concentrations. Different samples were prepared in four glucose concentrations using a mixture of heparinized blood, phosphate buffer saline and glucose. Blood glucose concentrations were measured with a blood glucometer, for reference. We have also prepared other samples diluting the blood in isotonic saline solution to check the effect of a higher multiple-scattering component on the ability of the technique to differentiate glucose levels based on μt. The OCT system used was a commercial Spectral Radar OCT with 930 nm central wavelength and spectral bandwidth (FWHM) of 100 nm. The system proved to be sensitive for all blood glucose concentrations tested, with good correlations with the obtained attenuation coefficients. A linear tendency was observed, with an increase in attenuation with higher values of glucose. Statistical difference was observed between all groups (p<0.001). This work opens the possibility towards a non-invasive diagnostic modality using OCT for glycemic control, which eliminates the use of analytes and/or test strips, as in the case with commercially available glucometers.

  18. Sleipner CCS site: velocity and attenuation model from seismic tomography

    NASA Astrophysics Data System (ADS)

    Rossi, G.; Chadwick, R. A.; Williams, G. A.

    2012-04-01

    The results of the travel-time and frequency shift tomographic inversion of the seismic data from one of the high-resolution lines acquired in 2006 on the Sleipner CO2 geological storage site are here presented. The work has been performed within the European project CO2ReMoVe, to produce an accurate model in-depth, of both seismic velocities and attenuation, to constrain better the quantification studies of the project's partners. Tomographic techniques have the advantage of not assuming horizontal layering or uniform lateral velocities, and of enabling an easy comparison of models, even if resulting from seismic data acquired with different geometries, unavoidable in a time-lapse data set. Through an iterative process, the differences in travel-times between observed direct, reflected or refracted arrivals and the same, calculated on a discrete model, with a ray-tracing based on the Fermat's principle, are minimized. Other minimization procedures provide the reflector/refractor geometries in -depth. Analogously, in attenuation tomography, the minimization process takes into account the observed and calculated spectral-centroid frequency-shift, due to the loss of the highest frequency of the seismic wave, while crossing an attenuating medium. The result is a seismic quality factor (Q) model in-depth, and hence of the attenuation that is known to be more sensitive to subtle changes in physical properties than seismic velocity. The model is across the center of the CO2 plume, on the in-line 1838, and is constituted by nine layers, four resulting by a preliminary analysis of the pre-injection 1994 data set, i.e. seabed, a strong reflection in the overburden and the top and bottom of the Utsira Sand, plus additional five horizons, four of which within Utsira Sands, and one just above the top of it. The layers within the reservoir are very close to each other and in some cases they merge together laterally. The accumulation of CO2 in the uppermost layer of the

  19. THE ATTENUATED RADON TRANSFORM: APPLICATION TO SINGLE-PHOTON EMISSION COMPUTED TOMOGRAPHY IN THE PRESENCE OF A VARIABLE ATTENUATING MEDIUM

    SciTech Connect

    Gullberg, Grant T.

    1980-03-01

    The properties of the attenuated Radon transform and its application to single-photon emission computed tomography (ECT) are analyzed in detail. In nuclear medicine and biological research, the objective of ECT is to describe quantitatively the position and strengths of internal sources of injected radiopharmaceuticals and radionuclides where the attenuation between the sources and detector is unknown. The problem is mathematically and practically quite different from well-known methods in transmission computed tomography (TCT) where only the attenuation is unknown. A mathematical structure using function theory and the theory of linear operators on Hilbert spaces is developed to better understand the spectral properties of the attenuated Radon transform. The continuous attenuated Radon transform is reduced to a matrix operator for discrete angular and lateral sampling, and the reconstruction problem reduces to a system of linear equations. For variable attenuation coefficients frequently found in imaging internal organs, the numerical methods developed in this paper involve iterative techniques of performing the generalized inverse. Its application to nuclear medicine is demonstrated by reconstructions of transverse sections of the brain, heart, and liver.

  20. Biosafety considerations for attenuated measles virus vectors used in virotherapy and vaccination

    PubMed Central

    Baldo, Aline; Galanis, Evanthia; Tangy, Frédéric; Herman, Philippe

    2016-01-01

    ABSTRACT Attenuated measles virus (MV) is one of the most effective and safe vaccines available, making it attractive candidate vector to prevent infectious diseases. Attenuated MV have acquired the ability to use the complement regulator CD46 as a major receptor to mediate virus entry and intercellular fusion. Therefore, attenuated MV strains preferentially infect and destroy a wide variety of cancer cells making them also attractive oncolytic vectors. The use of recombinant MV vector has to comply with various regulatory requirements, particularly relating to the assessment of potential risks for human health and the environment. The present article highlights the main characteristics of MV and recombinant MV vectors used for vaccination and virotherapy and discusses these features from a biosafety point of view. PMID:26631840

  1. Ultrasound tomography for simultaneous reconstruction of acoustic density, attenuation, and compressibility profiles.

    PubMed

    Mojabi, Pedram; LoVetri, Joe

    2015-04-01

    A fast and efficient forward scattering solver is developed for use in ultrasound tomography. The solver is formulated so as to enable the calculation of scattering from large and relatively high-contrast objects with inhomogeneous physical properties that vary simultaneously in acoustic attenuation, compressibility, and density. It is based on the method of moments in conjunction with a novel implementation of the conjugate gradient algorithm which requires the use of the adjoints of the scattering operators. The solver takes advantage of the symmetric block Toeplitz matrix with symmetric Toeplitz blocks property of the Green's function matrix to increase efficiency and only stores the first row of this matrix to reduce memory requirements. This row is then used for the matrix-vector multiplication using the fast Fourier transform technique, thus, resulting in the computational complexity of O(n log n). The marching-on-source technique is also used to provide a good initial guess which allows the conjugate gradient technique to converge faster than initializing with an arbitrary guess. This feature is important in tomographic inversion algorithms which require that the object to be imaged be interrogated via several incident fields. Forward scattering and inversion examples, based on the Conjugate Gradient Least Squares regularized Born Iterative Method, are shown, in two-dimensions, for objects varying in all three physical properties. PMID:25920834

  2. Material grain size characterization method based on energy attenuation coefficient spectrum and support vector regression.

    PubMed

    Li, Min; Zhou, Tong; Song, Yanan

    2016-07-01

    A grain size characterization method based on energy attenuation coefficient spectrum and support vector regression (SVR) is proposed. First, the spectra of the first and second back-wall echoes are cut into several frequency bands to calculate the energy attenuation coefficient spectrum. Second, the frequency band that is sensitive to grain size variation is determined. Finally, a statistical model between the energy attenuation coefficient in the sensitive frequency band and average grain size is established through SVR. Experimental verification is conducted on austenitic stainless steel. The average relative error of the predicted grain size is 5.65%, which is better than that of conventional methods.

  3. Live-Attenuated Bacterial Vectors: Tools for Vaccine and Therapeutic Agent Delivery

    PubMed Central

    Lin, Ivan Y. C.; Van, Thi Thu Hao; Smooker, Peter M.

    2015-01-01

    Genetically attenuated microorganisms, including pathogenic and commensal bacteria, can be engineered to carry and deliver heterologous antigens to elicit host immunity against both the vector as well as the pathogen from which the donor gene is derived. These live attenuated bacterial vectors have been given much attention due to their capacity to induce a broad range of immune responses including localized mucosal, as well as systemic humoral and/or cell-mediated immunity. In addition, the unique tumor-homing characteristics of these bacterial vectors has also been exploited for alternative anti-tumor vaccines and therapies. In such approach, tumor-associated antigen, immunostimulatory molecules, anti-tumor drugs, or nucleotides (DNA or RNA) are delivered. Different potential vectors are appropriate for specific applications, depending on their pathogenic routes. In this review, we survey and summarize the main features of the different types of live bacterial vectors and discussed the clinical applications in the field of vaccinology. In addition, different approaches for using live attenuated bacterial vectors for anti-cancer therapy is discussed, and some promising pre-clinical and clinical studies in this field are outlined. PMID:26569321

  4. Extension of depth-resolved reconstruction of attenuation coefficients in optical coherence tomography for slim samples

    NASA Astrophysics Data System (ADS)

    Hohmann, Martin; Lengenfelder, B.; Kanawade, R.; Klämpfl, F.; Schmidt, Michael

    2015-12-01

    Coherent light propagating through turbid media is attenuated due to scattering and absorption. The decrease of the intensity of the coherent light is described by the attenuation coefficient. The measured decay of the coherent light through turbid media with optical coherence tomography (OCT) can be used to reconstruct the attenuation coefficient. Since most of the OCT systems work in the near-infrared region, they are the optical window from 800-1400 nm in tissue. Hence, the most part of the attenuation coefficient is caused due to the scattering. Therefore, deriving the attenuation coefficient is one way to get an approximation of the scattering coefficient which is difficult to access even up to day. Moreover, OCT measurements are one of the few possibilities to derive physical properties with micrometre resolution of the media under investigation.

  5. Attenuation Tomography of Sierra Negra Volcano of the Galapagos Archipelago

    NASA Astrophysics Data System (ADS)

    Rodd, R.; Lees, J. M.

    2014-12-01

    Following relocation of events with the double-difference location algorithm (HypoDD), we apply tomographic methods to extract 3D attenuation models illuminating the plumbing system of the Sierra Negra Caldera of the Galapagos Archipelago. The dataset consists of 1737 events recorded from July 2009 to June 2011 on the 17-station SIGNET broadband seismic array. We use t* spectral decay methods for both P- and S- phases with the clustered locations to highlight locations where significant variations in Q suggest the presence of magma melt. While the presence of a magma sill, at least 2 km depth, is indicated by InSAR and GPS studies, the delineated magma body has not been explored in detail. The lower bound of the proposed magma accumulation is still under question and thus forms the primary target of this research. Melt replenishment and degassing of the magma sill is believed to cause inflation and/or deflation of the caldera floor. Imaging the extent of the magma sill will provide insight into the feeder system and deformation process of the Sierra Negra caldera. Detailed relocation, Qp and Qs inversion, as well as estimates of the scattering attenuation using coda-normalization technique will be presented. The close relationship between seismic attenuation and the thermal state of the magmatic system suggests we can distinguish melt and/or fluid regions within the Sierra Negra plumbing system.

  6. Crustal structure of the Alps as seen by attenuation tomography

    NASA Astrophysics Data System (ADS)

    Mayor, Jessie; Calvet, Marie; Margerin, Ludovic; Vanderhaeghe, Olivier; Traversa, Paola

    2016-04-01

    We develop a simple tomographic approach exploiting the decay rate of coda waves to map the absorption properties of the crust in a region delimited approximately by the Rhine Graben to the North, the Apennines to the South, the Massif Central to the West and the Dinarides to the East. Our dataset comprises 40 000 coda records of about 2000 weak to moderate crustal earthquakes, with magnitude ranging from 2.8 to 6 and recorded by broad-band, accelerometric and short-period stations. After proper choice of a coda window minimizing the effects of variable epicentral distances, we measure the coda quality factor Qc in five non-overlapping frequency windows covering the 1-32 Hz band for all available source station pairs. These measurements are subsequently converted into maps of absorption quality factor (Qi) using a linearized, approximate relation between Qc and Qi. In practice the following procedure is applied in each frequency band: (1) we divide the target region into 40 × 40 km cells; (2) for each source-station pair, we assign the measured Qc value to each pixel intercepted by the direct ray path; (3) the results are averaged over all paths and subsequently smoothed with a 3 × 3 pixels moving window. Our approach is consistent with the high sensitivity of Qc to the value of Qi between source and station. Our tomographic approach reveals strong lateral variations of absorption with length scales ranging from 100 km to 1000 km. At low frequency (∼ 1 Hz), the correlation with the surface geology is clear, Cenozoic and Mesozoic sedimentary basins (resp. crystalline massifs) being recognized as high (resp. low)-absorption regions. Furthermore the Qi map delineates finer geological features such as the Ivrea Body, the Rhône Valley, or felsic intrusions in the central Alps. At high-frequency (>16 Hz), only the thickest Cenozoic sedimentary deposits show up as high-attenuation regions and a north/south dichotomy is apparent in the absorption structure. The limit

  7. Evaluation of dosimetry and image of very low-dose computed tomography attenuation correction for pediatric positron emission tomography/computed tomography: phantom study

    NASA Astrophysics Data System (ADS)

    Bahn, Y. K.; Park, H. H.; Lee, C. H.; Kim, H. S.; Lyu, K. Y.; Dong, K. R.; Chung, W. K.; Cho, J. H.

    2014-04-01

    In this study, phantom was used to evaluate attenuation correction computed tomography (CT) dose and image in case of pediatric positron emission tomography (PET)/CT scan. Three PET/CT scanners were used along with acryl phantom in the size for infant and ion-chamber dosimeter. The CT image acquisition conditions were changed from 10 to 20, 40, 80, 100 and 160 mA and from 80 to 100, 120 and 140 kVp, which aimed at evaluating penetrate dose and computed tomography dose indexvolume (CTDIvol) value. And NEMA PET Phantom™ was used to obtain PET image under the same CT conditions in order to evaluate each attenuation-corrected PET image based on standard uptake value (SUV) value and signal-to-noise ratio (SNR). In general, the penetrate dose was reduced by around 92% under the minimum CT conditions (80 kVp and 10 mA) with the decrease in CTDIvol value by around 88%, compared with the pediatric abdomen CT conditions (100 kVp and 100 mA). The PET image with its attenuation corrected according to each CT condition showed no change in SUV value and no influence on the SNR. In conclusion, if the minimum dose CT that is properly applied to body of pediatric patient is corrected for attenuation to ensure that the effective dose is reduced by around 90% or more compared with that for adult patient, this will be useful to reduce radiation exposure level.

  8. Simultaneous iterative reconstruction for emission and attenuation images in positron emission tomography.

    PubMed

    Glatting, G; Wuchenauer, M; Reske, S N

    2000-09-01

    The quality of the attenuation correction strongly influences the outcome of the reconstructed emission scan in positron emission tomography. Usually the attenuation correction factors are calculated from the transmission and blank scan and thereafter applied during the reconstruction on the emission data. However, this is not an optimal treatment of the available data, because the emission data themselves contain additional information about attenuation: The optimal treatment must use this information for the determination of the attenuation correction factors. Therefore, our purpose is to investigate a simultaneous emission and attenuation image reconstruction using a maximum likelihood estimator, which takes the attenuation information in the emission data into account. The total maximum likelihood function for emission and transmission is used to derive a one-dimensional Newton-like algorithm for the calculation of the emission and attenuation image. Log-likelihood convergence, mean differences, and the mean of squared differences for the emission image and the attenuation correction factors of a mathematical thorax phantom were determined and compared. As a result we obtain images improved with respect to log likelihood in all cases and with respect to our figures of merit in most cases. We conclude that the simultaneous reconstruction can improve the performance of image reconstruction.

  9. Attenuation Tomography of Body Waves in Thickness-varying Layered Media

    NASA Astrophysics Data System (ADS)

    Cao, H.; Zhou, H.

    2006-12-01

    The intrinsic attenuation of seismic waves, which is quantified as inverse to the quality factor (Q) of a medium, is a well-publicized and yet poorly studied subject. While it is common to deduce Q values from measured dispersion data for surface waves, previous studies on the intrinsic attenuation of body waves have relied on measurements of the waveform of first arrivals or reflections. Better understanding is needed for both solid Earth geophysics and applied seismology to quantify the contributing factors to seismic attenuation and decompose Q from other factors because Q is closely related to rock property and fluid saturation. This study focuses on forward modeling and tomographic inversion for the Q values in thickness-varying layered media. Many of the existing theoretical Q models work in such media. Our work is an extension of the deformable- layer tomography (Zhou, 2004) to dissipative media. In the first phase of this study, we evaluated, through numerical modeling the various factors contributing to the attenuation of body waves. Theoretically, there are intrinsic attenuation, which is related to rock and pore fluid properties, and attenuation due to wave propagation effects, such as geometrical spreading and energy partition across interfaces (transmission and reflection). We made several representative numerical models, and conducted forward modeling using both wave theory and ray theory to quantify the amount of the attenuation of body waves due to different factors. In the second phase, we are integrating the forward modeling with the deformable-layer tomography algorithm to develop means to invert for Q distribution in thickness-varying layer media. While the deformable-layer tomography determines layer velocities and geometry, the current work intends to invert for Q values of the thickness-varying model layers as well as parameters associated with interface energy partition and geometric spreading. In the third phase, we plan to apply the

  10. Monitoring changes of optical attenuation coefficients of acupuncture points during laser acupuncture by optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Huang, Yimei; Yang, Hongqin; Wang, Yuhua; Zheng, Liqin; Xie, Shusen

    2010-11-01

    The physical properties of acupuncture point were important to discover the mechanism of acupuncture meridian. In this paper, we used an optical coherence tomography to monitor in vivo the changes of optical attenuation coefficients of Hegu acupuncture point and non-acupuncture point during laser irradiation on Yangxi acupuncture point. The optical attenuation coefficients of Hegu acupuncture point and non-acupuncture point were obtained by fitting the raw data according to the Beer-Lambert's law. The experimental results showed that the optical attenuation coefficient of Hegu acupuncture point decreased during the laser acupuncture, in contrast to a barely changed result in that of non-acupuncture point. The significant change of optical attenuation coefficient of Hegu acupuncture point indicated that there was a correlation between Hegu and Yangxi acupuncture points to some extent.

  11. Modeling of polychromatic attenuation using computed tomography reconstructed images

    NASA Technical Reports Server (NTRS)

    Yan, C. H.; Whalen, R. T.; Beaupre, G. S.; Yen, S. Y.; Napel, S.

    1999-01-01

    This paper presents a procedure for estimating an accurate model of the CT imaging process including spectral effects. As raw projection data are typically unavailable to the end-user, we adopt a post-processing approach that utilizes the reconstructed images themselves. This approach includes errors from x-ray scatter and the nonidealities of the built-in soft tissue correction into the beam characteristics, which is crucial to beam hardening correction algorithms that are designed to be applied directly to CT reconstructed images. We formulate this approach as a quadratic programming problem and propose two different methods, dimension reduction and regularization, to overcome ill conditioning in the model. For the regularization method we use a statistical procedure, Cross Validation, to select the regularization parameter. We have constructed step-wedge phantoms to estimate the effective beam spectrum of a GE CT-I scanner. Using the derived spectrum, we computed the attenuation ratios for the wedge phantoms and found that the worst case modeling error is less than 3% of the corresponding attenuation ratio. We have also built two test (hybrid) phantoms to evaluate the effective spectrum. Based on these test phantoms, we have shown that the effective beam spectrum provides an accurate model for the CT imaging process. Last, we used a simple beam hardening correction experiment to demonstrate the effectiveness of the estimated beam profile for removing beam hardening artifacts. We hope that this estimation procedure will encourage more independent research on beam hardening corrections and will lead to the development of application-specific beam hardening correction algorithms.

  12. High resolution seismic attenuation tomography at Medicine Lake Volcano, California

    SciTech Connect

    Zucca, J.J.; Kasameyer, P.W.

    1987-07-10

    Medicine Lake Volcano, a broad shield volcano about 50km east of Mount Shasta in northern California, produced rhylotic eruptions as recently as 400 years ago. Because of this recent activity it is of considerable interest to producers of geothermal energy. In a joint project sponsored by the Geothermal Research Program of the USGS and the Division of Geothermal and Hydropower Division of the US-DOE, the USGS and LLNL conducted an active seismic experiment designed to explore the area beneath and around the caldera. The experiment of eight explosions detonated in a 50 km radius circle around the volcano recorded on a 11 x 15 km grid of 140 seismographs. The travel time data from the experiment have been inverted for structure and are presented elsewhere in this volume. In this paper we present the results of an inversion for 1/Q structure using t* data in a modified Aki inversion scheme. Although the data are noisy, we find that in general attenuative zones correlate with low velocity zones. In particular, we observe a high 1/Q zone roughly in the center of the caldera at 4 km depth in between two large recent dacite flows. This zone could represent the still molten or partially molten source of the flows.

  13. A novel phantom design for emission tomography enabling scatter- and attenuation-"free" single-photon emission tomography imaging.

    PubMed

    Larsson, S A; Jonsson, C; Pagani, M; Johansson, L; Jacobsson, H

    2000-02-01

    A newly designed technique for experimental single-photon emission tomography (SPET) and positron emission tomography (PET) data acquisition with minor disturbing effects from scatter and attenuation has been developed. In principle, the method is based on discrete sampling of the radioactivity distribution in 3D objects by means of equidistant 2D planes. The starting point is a set of digitised 2D sections representing the radioactivity distribution of the 3D object. Having a radioactivity-related grey scale, the 2D images are printed on paper sheets using radioactive ink. The radioactive sheets can be shaped to the outline of the object and stacked into a 3D structure with air or some arbitrary dense material in between. For this work, equidistantly spaced transverse images of a uniform cylindrical phantom and of the digitised Hoffman rCBF phantom were selected and printed out on paper sheets. The uniform radioactivity sheets were imaged on the surface of a low-energy ultra-high-resolution collimator (4 mm full-width at half-maximum) of a three-headed SPET camera. The reproducibility was 0.7% and the uniformity was 1.2%. Each rCBF sheet, containing between 8.3 and 80 MBq of 99mTcO4- depending on size, was first imaged on the collimator and then stacked into a 3D structure with constant 12 mm air spacing between the slices. SPET was performed with the sheets perpendicular to the central axis of the camera. The total weight of the stacked rCBF phantom in air was 63 g, giving a scatter contribution comparable to that of a point source in air. The overall attenuation losses were <20%. A second SPET study was performed with 12-mm polystyrene plates in between the radioactive sheets. With polystyrene plates, the total phantom weight was 2300 g, giving a scatter and attenuation magnitude similar to that of a patient study. With the proposed technique, it is possible to obtain "ideal" experimental images (essentially built up by primary photons) for comparison with "real

  14. Attenuation tomography in the rupture area of the 2010 M8.8 Maule, Chile, earthquake

    NASA Astrophysics Data System (ADS)

    Heather-Smith, Helen; Rietbrock, Andreas

    2016-04-01

    In recent years several seismological studies have developed a detailed image of the megathrust interface between the subducting Nazca plate and and the overriding South American plate in the rupture area of the 2010 M8.8 Maule, Chile, earthquake. Hicks et al. (2014) have published a high resolution 3D seismic tomography model and characterised the different regimes acting along the interface based on their seismic properties. A more detailed study by Moreno et al. (2014) showed that the seismic Vp/Vs ratio and inter-seismic locking determined from GPS measurements are correlated. Together these observations open up the possibility to map the rupture potential of possible future earthquakes, although the underlying processes are yet not fully understood and a more in depth analysis of other physical properties is needed. 3D seismic attenuation structure as well as seismic stress-drop distribution based on the aftershock seismicity are providing independent data sets to better constrain the physical processes acting along the subduction zone interface. As seismic attenuation is particularly sensitive to fluid saturation it opens up the possibility to study more directly the influence of fluids on aftershock activity as compared to standard velocity tomography studies. Based on our event catalogue of approximately 30,000 aftershocks we are currently selecting the most appropriate data set for the staggered 3D attenuation tomography. The inverted attenuation model will then be used to calculate seismic stress drop values for the complete aftershock catalogue. We will present our preliminary 3D attenuation model together with our stress drop estimates and compare our finding to the 3D velocity structure and slip distribution.

  15. Vector Tomography for the Coronal Magnetic Field. II. Hanle Effect Measurements

    NASA Astrophysics Data System (ADS)

    Kramar, M.; Inhester, B.; Lin, H.; Davila, J.

    2013-09-01

    In this paper, we investigate the feasibility of saturated coronal Hanle effect vector tomography or the application of vector tomographic inversion techniques to reconstruct the three-dimensional magnetic field configuration of the solar corona using linear polarization measurements of coronal emission lines. We applied Hanle effect vector tomographic inversion to artificial data produced from analytical coronal magnetic field models with equatorial and meridional currents and global coronal magnetic field models constructed by extrapolation of real photospheric magnetic field measurements. We tested tomographic inversion with only Stokes Q, U, electron density, and temperature inputs to simulate observations over large limb distances where the Stokes I parameters are difficult to obtain with ground-based coronagraphs. We synthesized the coronal linear polarization maps by inputting realistic noise appropriate for ground-based observations over a period of two weeks into the inversion algorithm. We found that our Hanle effect vector tomographic inversion can partially recover the coronal field with a poloidal field configuration, but that it is insensitive to a corona with a toroidal field. This result demonstrates that Hanle effect vector tomography is an effective tool for studying the solar corona and that it is complementary to Zeeman effect vector tomography for the reconstruction of the coronal magnetic field.

  16. VECTOR TOMOGRAPHY FOR THE CORONAL MAGNETIC FIELD. II. HANLE EFFECT MEASUREMENTS

    SciTech Connect

    Kramar, M.; Inhester, B.; Lin, H.; Davila, J. E-mail: Joseph.M.Davila@nasa.gov E-mail: lin@ifa.hawaii.edu

    2013-09-20

    In this paper, we investigate the feasibility of saturated coronal Hanle effect vector tomography or the application of vector tomographic inversion techniques to reconstruct the three-dimensional magnetic field configuration of the solar corona using linear polarization measurements of coronal emission lines. We applied Hanle effect vector tomographic inversion to artificial data produced from analytical coronal magnetic field models with equatorial and meridional currents and global coronal magnetic field models constructed by extrapolation of real photospheric magnetic field measurements. We tested tomographic inversion with only Stokes Q, U, electron density, and temperature inputs to simulate observations over large limb distances where the Stokes I parameters are difficult to obtain with ground-based coronagraphs. We synthesized the coronal linear polarization maps by inputting realistic noise appropriate for ground-based observations over a period of two weeks into the inversion algorithm. We found that our Hanle effect vector tomographic inversion can partially recover the coronal field with a poloidal field configuration, but that it is insensitive to a corona with a toroidal field. This result demonstrates that Hanle effect vector tomography is an effective tool for studying the solar corona and that it is complementary to Zeeman effect vector tomography for the reconstruction of the coronal magnetic field.

  17. Simultaneous iterative reconstruction of emission and attenuation images in positron emission tomography from emission data only.

    PubMed

    Landmann, M; Reske, S N; Glatting, G

    2002-09-01

    For quantitative image reconstruction in positron emission tomography attenuation correction is mandatory. In case that no data are available for the calculation of the attenuation correction factors one can try to determine them from the emission data alone. However, it is not clear if the information content is sufficient to yield an adequate attenuation correction together with a satisfactory activity distribution. Therefore, we determined the log likelihood distribution for a thorax phantom depending on the choice of attenuation and activity pixel values to measure the crosstalk between both. In addition an iterative image reconstruction (one-dimensional Newton-type algorithm with a maximum likelihood estimator), which simultaneously reconstructs the images of the activity distribution and the attenuation coefficients is used to demonstrate the problems and possibilities of such a reconstruction. As result we show that for a change of the log likelihood in the range of statistical noise, the associated change in the activity value of a structure is between 6% and 263%. In addition, we show that it is not possible to choose the best maximum on the basis of the log likelihood when a regularization is used, because the coupling between different structures mediated by the (smoothing) regularization prevents an adequate solution due to crosstalk. We conclude that taking into account the attenuation information in the emission data improves the performance of image reconstruction with respect to the bias of the activities, however, the reconstruction still is not quantitative.

  18. Imaging continental collision and subduction in the Pamir mountain range, Central Asia, by seismic attenuation tomography

    NASA Astrophysics Data System (ADS)

    Schurr, Bernd; Haberland, Christian; Sippl, Christian; Yuan, Xiaohui; Mechie, James; Schneider, Felix; Tipage Team

    2014-05-01

    Subduction of continental crust is the mode of shortening in continental collision that is the least well understood. It is known to occur, as testified e.g., by now exhumed ultra-high-pressure rocks, despite the fact that continental crust is generally too buoyant to submerge into the mantle. Continental crust may, however, subduct in tow of a leading dense oceanic plate at the last stage of the plate tectonic Wilson cycle. Alternatively, if upper and lower crust detach, the latter, together with the underlying cold mantle lithosphere, may become negatively buoyant, enabling their descent. The Pamir mountains in Central Asia have been one of the few places on Earth, where on-going continental subduction has been postulated based on an active Wadati-Benioff zone. The Pamir is situated on an orographic node northwest of Tibet, between the Tarim and Tajik basins, where the Hindu Kush, Karakorum, western Kunlun Shan and Tien Shan ranges coalesce. It formed in the late Paleogene to Neogene, i.e. approximately during the second half of the India-Asia collision, north of the Western Himalayan Syntaxis, on the Asian (retro)continent. We use tomography of seismic attenuation to image the lithospheric-scale structure of the Pamir orogen. Attenuation tomography has been shown to be a powerful tool to study deep process-related structures particularly in oceanic subduction zones. Attenuation at this scale may be seen as a proxy for rheology and hence is very sensitive to e.g., homologous temperature and deformation. We use data from a two-year seismic deployment of the Tien Shan-Pamir Geodynamic Program (TIPAGE). The whole path attenuation parameter t* is determined by inversion of P-wave velocity spectra from 1790 earthquakes and then inverted for a 3D attenuation model (Qp) employing a recently published 3D velocity model. We find a prominent continuous crescent-shaped high-attenuation anomaly (HAA) that penetrates from upper crustal levels to depths of more than 100 km. At

  19. Attenuation correction in emission tomography using the emission data—A review

    PubMed Central

    Li, Yusheng

    2016-01-01

    The problem of attenuation correction (AC) for quantitative positron emission tomography (PET) had been considered solved to a large extent after the commercial availability of devices combining PET with computed tomography (CT) in 2001; single photon emission computed tomography (SPECT) has seen a similar development. However, stimulated in particular by technical advances toward clinical systems combining PET and magnetic resonance imaging (MRI), research interest in alternative approaches for PET AC has grown substantially in the last years. In this comprehensive literature review, the authors first present theoretical results with relevance to simultaneous reconstruction of attenuation and activity. The authors then look back at the early history of this research area especially in PET; since this history is closely interwoven with that of similar approaches in SPECT, these will also be covered. We then review algorithmic advances in PET, including analytic and iterative algorithms. The analytic approaches are either based on the Helgason–Ludwig data consistency conditions of the Radon transform, or generalizations of John’s partial differential equation; with respect to iterative methods, we discuss maximum likelihood reconstruction of attenuation and activity (MLAA), the maximum likelihood attenuation correction factors (MLACF) algorithm, and their offspring. The description of methods is followed by a structured account of applications for simultaneous reconstruction techniques: this discussion covers organ-specific applications, applications specific to PET/MRI, applications using supplemental transmission information, and motion-aware applications. After briefly summarizing SPECT applications, we consider recent developments using emission data other than unscattered photons. In summary, developments using time-of-flight (TOF) PET emission data for AC have shown promising advances and open a wide range of applications. These techniques may both remedy

  20. Attenuation tomography beneath the Rocky Mountain front: Implications for the physical state of the upper mantle

    NASA Astrophysics Data System (ADS)

    Boyd, Oliver S.; Sheehan, Anne F.

    Utilizing the Rocky Mountain Front (RMF) broadband seismic dataset acquired in 1992, this study has derived the seismic attenuation structure underlying part of the Southern Rocky Mountains and surrounding areas through measurements of differential t* of S-phase waveforms. Previous studies of the area include P, S and surface wave travel time tomography, and all indicate low upper mantle velocities below the Rocky Mountain region. Calculations of intrinsic attenuation coupled with current velocity models aid in the determination of temperature, partial melt distributions, and compositional variation. A N-S zone of high shear wave attenuation (Qs≃30) is found in the mantle beneath the Rocky Mountains and lies east of the region of lowest shear wave velocity. Relationships between shear wave attenuation and shear wave velocity are consistent with both thermal and compositional variability. Along the eastern Colorado Rockies and due north of the Rio Grande Rift, the relationships are consistent with an interpretation of elevated temperatures by up to 50 K at 125 km depth. West of this region low velocities and low attenuation suggest either unusual composition or very high temperatures. The low density mantle material beneath the Colorado Rocky Mountains in addition to increased crustal thickness and low density crustal intrusions provides a density contrast sufficient to support its overburden.

  1. Measurement of the linear attenuation coefficients of breast tissues by synchrotron radiation computed tomography

    NASA Astrophysics Data System (ADS)

    Chen, R. C.; Longo, R.; Rigon, L.; Zanconati, F.; De Pellegrin, A.; Arfelli, F.; Dreossi, D.; Menk, R.-H.; Vallazza, E.; Xiao, T. Q.; Castelli, E.

    2010-09-01

    The measurement of the linear attenuation coefficients of breast tissues is of fundamental importance in the field of breast x-ray diagnostic imaging. Different groups have evaluated the linear attenuation coefficients of breast tissues by carrying out direct attenuation measurements in which the specimens were thin and selected as homogeneous as possible. Here, we use monochromatic and high-intensity synchrotron radiation computed tomography (SR CT) to evaluate the linear attenuation coefficients of surgical breast tissues in the energy range from 15 to 26.5 keV. X-ray detection is performed by a custom digital silicon micro-strip device, developed in the framework of the PICASSO INFN experiment. Twenty-three human surgical breast samples were selected for SR CT and histological study. Six of them underwent CT, both as fresh tissue and after formalin fixation, while the remaining 17 were imaged only as formalin-fixed tissues. Our results for fat and fibrous tissues are in good agreement with the published values. However, in contrast to the published data, our measurements show no significant differences between fibrous and tumor tissues. Moreover, our results for fresh and formalin-fixed tissues demonstrate a reduction of the linear attenuation coefficient for fibrous and tumor tissues after fixation.

  2. Attenuation and Scattering Tomography of the Deep Plumbing System of Mount St. Helens

    NASA Astrophysics Data System (ADS)

    De Siena, L.; Thomas, C.; Waite, G. P.; Moran, S. C.; Klemme, S.

    2014-12-01

    We present a combined 3D P-wave attenuation, 2D S-coda attenuation, and 3D S-coda scattering tomography model of fluid pathways, feeding systems, and sediments below Mount St. Helens (MSH) volcano between depths of 0 and 18 km. High-scattering and high-attenuation shallow anomalies are indicative of magma and fluid-rich zones within and below the volcanic edifice down to 6 km depth, where a high-scattering body outlines the top of a deeper aseismic velocity anomaly. Both the volcanic edifice and these structures induce a combination of strong scattering and attenuation on any seismic wave-field, particularly those recorded on the northern and eastern flanks of the volcanic cone. North of the cone, between depths of 0 and 10 km, a low-velocity, high-scattering, and high-attenuation north-south trending trough is attributed to thick piles of Tertiary marine sediments within the St. Helens Seismic Zone. A laterally-extended 3D scattering contrast at depths of 10 to 14 km is related to the boundary between upper and lower crust, and caused in our interpretation by the large scale interaction of the Siletz terrane with the Cascade arc crust. This contrast presents a low scattering, 4-6 km2 "hole" under the north-eastern flank of the volcano. We infer that this section represents the main path of magma ascent from depths greater than 6 km at MSH, with a small north-east shift in the lower plumbing system of the volcano. We conclude that combinations of different non-standard tomographic methods, and particularly the application of full-waveform tomography to highly heterogeneous media, represent the future of seismic volcano imaging.

  3. Attenuation and scattering tomography of the deep plumbing system of Mount St. Helens

    USGS Publications Warehouse

    De Siena, Luca; Thomas, Christine; Waite, Greg P.; Moran, Seth C.; Klemme, Stefan

    2014-01-01

    We present a combined 3-D P wave attenuation, 2-D S coda attenuation, and 3-D S coda scattering tomography model of fluid pathways, feeding systems, and sediments below Mount St. Helens (MSH) volcano between depths of 0 and 18 km. High-scattering and high-attenuation shallow anomalies are indicative of magma and fluid-rich zones within and below the volcanic edifice down to 6 km depth, where a high-scattering body outlines the top of deeper aseismic velocity anomalies. Both the volcanic edifice and these structures induce a combination of strong scattering and attenuation on any seismic wavefield, particularly those recorded on the northern and eastern flanks of the volcanic cone. North of the cone between depths of 0 and 10 km, a low-velocity, high-scattering, and high-attenuation north-south trending trough is attributed to thick piles of Tertiary marine sediments within the St. Helens Seismic Zone. A laterally extended 3-D scattering contrast at depths of 10 to 14 km is related to the boundary between upper and lower crust and caused in our interpretation by the large-scale interaction of the Siletz terrane with the Cascade arc crust. This contrast presents a low-scattering, 4–6 km2 “hole” under the northeastern flank of the volcano. We infer that this section represents the main path of magma ascent from depths greater than 6 km at MSH, with a small north-east shift in the lower plumbing system of the volcano. We conclude that combinations of different nonstandard tomographic methods, leading toward full-waveform tomography, represent the future of seismic volcano imaging.

  4. Validation of Computed Tomography-based Attenuation Correction of Deviation between Theoretical and Actual Values in Four Computed Tomography Scanners

    PubMed Central

    Yada, Nobuhiro; Onishi, Hideo

    2016-01-01

    Objective(s): In this study, we aimed to validate the accuracy of computed tomography-based attenuation correction (CTAC), using the bilinear scaling method. Methods: The measured attenuation coefficient (μm) was compared to the theoretical attenuation coefficient (μt), using four different CT scanners and an RMI 467 phantom. The effective energy of CT beam X-rays was calculated, using the aluminum half-value layer method and was used in conjunction with an attenuation coefficient map to convert the CT numbers to μm values for the photon energy of 140 keV. We measured the CT number of RMI 467 phantom for each of the four scanners and compared the μm and μt values for the effective energies of CT beam X-rays, effective atomic numbers, and physical densities. Results: The μm values for CT beam X-rays with low effective energies decreased in high construction elements, compared with CT beam X-rays of high effective energies. As the physical density increased, the μm values elevated linearly. Compared with other scanners, the μm values obtained from the scanner with CT beam X-rays of maximal effective energy increased once the effective atomic number exceeded 10.00. The μm value of soft tissue was equivalent to the μt value. However, the ratios of maximal difference between μm and μt values were 25.4% (lung tissue) and 21.5% (bone tissue), respectively. Additionally, the maximal difference in μm values was 6.0% in the bone tissue for each scanner. Conclusion: The bilinear scaling method could accurately convert CT numbers to μ values in soft tissues. PMID:27408896

  5. Estimation of the matrix attenuation in heterogeneous radioactive waste drums using dual-energy computed tomography

    NASA Astrophysics Data System (ADS)

    Robert-Coutant, C.; Moulin, V.; Sauze, R.; Rizo, P.; Casagrande, J. M.

    1999-02-01

    Gamma spectroscopy measurements of the activity of radionuclides in nuclear waste drums must be corrected for the attenuation due to the non-homogeneous waste matrix. The attenuation factors depend on the matrix local density and effective atomic number, and on the energy of the gamma rays emitted by the radionuclides. The requirements for the system presented in this paper are to estimate the attenuation in low-density (<0.4 g/cm 3), 120 l drums containing radionuclides emitting in the (59.5 keV, 1.4 MeV) energy range. A series of three-dimensional (3D) attenuation maps of the drum are computed using a dual-energy computerized tomography (DE-CT) system with an external, polychromatic X-ray source. The system successively records low-energy (mean energy about 62 keV) and high-energy (about 300 keV) projections using different tube voltages, anode current, and filtration. Each projection is acquired by 22 BGO scintillators - PM detectors in fan-beam geometry. The drum is rotated and elevated in a helical scan. A DE calibration transforms pairs of DE projections into pairs of "equivalent basis materials (BM)" projections. This non-linear transformation allows to correct for polychromaticity. After reconstruction, the two "equivalent BM" 3D maps are used, together with tabulated attenuation data of the BMs, in order to extrapolate the 3D attenuation map at any energy peak. Maps of the mass density and of the effective atomic number can also be computed. The total examination time is less than 5 min. Experimental images are shown.

  6. Seismic attenuation tomography of the Tonga-Fiji region using phase pair methods

    NASA Astrophysics Data System (ADS)

    Roth, Erich G.; Wiens, Douglas A.; Dorman, Leroy M.; Hildebrand, John; Webb, Spahr C.

    1999-03-01

    The anelastic structure of the region surrounding the Tonga slab and Lau back arc spreading center in the southwest Pacific is studied using data from 12 broadband island stations and 30 ocean bottom seismographs. Two differential attenuation methods determine δt* over the frequency band 0.1 to 3.5 Hz for earthquakes in the Tonga slab. The S-P method measures the difference in spectral decay between P and S waves arriving at the same station. The P-P method measures the difference in spectral decay for P waves with different paths through the upper mantle. Eight hundred sixty phase pairs are used to invert for two-dimensional 1/Qα structure using a nonnegative least squares algorithm. A grid search method determines the Qα/Qβ ratio most compatible with both the S-P and P-P differential measurements. The highest attenuation (Qα = 90) is found within the upper 100 km beneath the active portions of the Lau Basin extending westward to the Lau Ridge. These regions probably delineate the source region for the back arc spreading center magmas, expected to be within the upper 100 km based on petrological considerations. The high attenuation regions also correlate well with zones of low P wave velocity determined by regional velocity tomography. Somewhat lower attenuation is found beneath the Fiji Plateau than beneath the Lau Basin. The entire back arc is characterized by a gradual decrease in attenuation to a depth of 300 to 400 km. The slab is imaged as a region of low attenuation (Qα > 900) material. A Qα/Qβ ratio of 1.75 provides the best fit between the S-P and P-P data sets upon inversion. Spectral stacking shows no frequency dependence within the frequency band analyzed.

  7. SOUND-SPEED AND ATTENUATION IMAGING OF BREAST TISSUE USING WAVEFORM TOMOGRAPHY OF TRANSMISSION ULTRASOUND DATA

    SciTech Connect

    HUANG, LIANJIE; PRATT, R. GERHARD; DURIC, NEB; LITTRUP, PETER

    2007-01-25

    Waveform tomography results are presented from 800 kHz ultrasound transmission scans of a breast phantom, and from an in vivo ultrasound breast scan: significant improvements are demonstrated in resolution over time-of-flight reconstructions. Quantitative reconstructions of both sound-speed and inelastic attenuation are recovered. The data were acquired in the Computed Ultrasound Risk Evaluation (CURE) system, comprising a 20 cm diameter solid-state ultrasound ring array with 256 active, non-beamforming transducers. Waveform tomography is capable of resolving variations in acoustic properties at sub-wavelength scales. This was verified through comparison of the breast phantom reconstructions with x-ray CT results: the final images resolve variations in sound speed with a spatial resolution close to 2 mm. Waveform tomography overcomes the resolution limit of time-of-flight methods caused by finite frequency (diffraction) effects. The method is a combination of time-of-flight tomography, and 2-D acoustic waveform inversion of the transmission arrivals in ultrasonic data. For selected frequency components of the waveforms, a finite-difference simulation of the visco-acoustic wave equation is used to compute synthetic data in the current model, and the data residuals are formed by subtraction. The residuals are used in an iterative, gradient-based scheme to update the sound-speed and attenuation model to produce a reduced misfit to the data. Computational efficiency is achieved through the use of time-reversal of the data residuals to construct the model updates. Lower frequencies are used first, to establish the long wavelength components of the image, and higher frequencies are introduced later to provide increased resolution.

  8. Hyperspherical Bloch Vectors with Applications to Entanglement and Quantum State Tomography

    NASA Astrophysics Data System (ADS)

    Hedemann, Samuel R.

    Since the birth of quantum mechanics, it has become apparent that the density operator gives the most complete description of quantum states, both pure and mixed. However, Bloch vectors are also capable of describing all quantum states, with the added bonus that they are real-valued geometrical objects. While Bloch vectors are widely used in many fields such as quantum information and quantum measurement, they are often avoided and may be occasionally misused due to the lack of a complete, centralized theory describing Bloch vectors in depth. Therefore, the purpose of this work is to give a compact, complete introduction to a standard formalism of quantum mechanics for discrete systems in the language of Bloch vectors expressed using hyperspherical parameterizations. The subject matter covers representations of pure and mixed states, unipartite and multipartite systems, closed-form description of Bloch-vector physicality, reductions of state, new investigations of multipartite entanglement, rotations of state, quantum measurements, state and process tomography, quantum operations, and state dynamics in both closed and open quantum systems. A new multipartite entanglement monotone is also developed, with the benefit of being automatically normalized for all possible systems, and it is extended to mixed states with convex roof extension. Emphasis is placed on geometrical interpretations and parameterizations, and on applying the theory to common applications, particularly those related to entanglement and tomography.

  9. Application of the vector Monte-Carlo method in polarisation optical coherence tomography

    SciTech Connect

    Churmakov, D Yu; Kuz'min, V L; Meglinskii, I V

    2006-11-30

    The vector Monte-Carlo method is developed and applied to polarisation optical coherence tomography. The basic principles of simulation of the propagation of polarised electromagnetic radiation with a small coherence length are considered under conditions of multiple scattering. The results of numerical simulations for Rayleigh scattering well agree with the Milne solution generalised to the case of an electromagnetic field and with theoretical calculations in the diffusion approximation. (special issue devoted to multiple radiation scattering in random media)

  10. Patient self-attenuation and technologist dose in positron emission tomography

    SciTech Connect

    Zeff, Benjamin W.; Yester, Michael V.

    2005-04-01

    Positron emission tomography (PET), with 511-keV radiation and long patient-uptake times, presents unique radiation safety concerns. This two-part study considers aspects of PET radiation safety as they relate to PET suite design, dose to the public, and technologist occupational dose. In the first part of the study, the self-attenuation of radiation by patients' bodies was quantified. The radiation exposure was measured at three positions from 64 patients injected with fluorine-18 fluorodeoxyglucose (FDG) during the uptake period. Compared with an in vitro control used as a point source, a significant decrease in exposure (>40% at 1 m) was observed due to nonuniform distribution of FDG and attenuation within the patients. The attenuation data are consistent with results from simulations [M. E. Phelps, ''Comments and Perspectives,'' J. Nucl. Med. 45, 1601 (2004)] that treat the body as a uniform, water-filled cylinder. As distance is often the principal source of protection for 511-keV radiation, the considerable self-attenuation may allow for more compact PET suites. However, despite high patient self-attenuation, shielding, and standard precautionary measures, PET technologist occupational doses can remain quite high ({approx}12 mSv/year). The second part of this study tracked the daily dose received by PET technologists. Close technologist-patient interaction both during and following FDG administration, as much as 20 min/study, contribute to the high doses and point to the need for a more innovative approach to radiation protection for PET technologists.

  11. X-ray computed tomography of wood-adhesive bondlines: Attenuation and phase-contrast effects

    DOE PAGESBeta

    Paris, Jesse L.; Kamke, Frederick A.; Xiao, Xianghui

    2015-07-29

    Microscale X-ray computed tomography (XCT) is discussed as a technique for identifying 3D adhesive distribution in wood-adhesive bondlines. Visualization and material segmentation of the adhesives from the surrounding cellular structures require sufficient gray-scale contrast in the reconstructed XCT data. Commercial wood-adhesive polymers have similar chemical characteristics and density to wood cell wall polymers and therefore do not provide good XCT attenuation contrast in their native form. Here, three different adhesive types, namely phenol formaldehyde, polymeric diphenylmethane diisocyanate, and a hybrid polyvinyl acetate, are tagged with iodine such that they yield sufficient X-ray attenuation contrast. However, phase-contrast effects at material edgesmore » complicate image quality and segmentation in XCT data reconstructed with conventional filtered backprojection absorption contrast algorithms. A quantitative phase retrieval algorithm, which isolates and removes the phase-contrast effect, was demonstrated. The paper discusses and illustrates the balance between material X-ray attenuation and phase-contrast effects in all quantitative XCT analyses of wood-adhesive bondlines.« less

  12. X-ray computed tomography of wood-adhesive bondlines: Attenuation and phase-contrast effects

    SciTech Connect

    Paris, Jesse L.; Kamke, Frederick A.; Xiao, Xianghui

    2015-07-29

    Microscale X-ray computed tomography (XCT) is discussed as a technique for identifying 3D adhesive distribution in wood-adhesive bondlines. Visualization and material segmentation of the adhesives from the surrounding cellular structures require sufficient gray-scale contrast in the reconstructed XCT data. Commercial wood-adhesive polymers have similar chemical characteristics and density to wood cell wall polymers and therefore do not provide good XCT attenuation contrast in their native form. Here, three different adhesive types, namely phenol formaldehyde, polymeric diphenylmethane diisocyanate, and a hybrid polyvinyl acetate, are tagged with iodine such that they yield sufficient X-ray attenuation contrast. However, phase-contrast effects at material edges complicate image quality and segmentation in XCT data reconstructed with conventional filtered backprojection absorption contrast algorithms. A quantitative phase retrieval algorithm, which isolates and removes the phase-contrast effect, was demonstrated. The paper discusses and illustrates the balance between material X-ray attenuation and phase-contrast effects in all quantitative XCT analyses of wood-adhesive bondlines.

  13. Local Earthquake Velocity and Attenuation Tomography of the Jalisco, Mexico Region

    NASA Astrophysics Data System (ADS)

    Watkins, W. D.; Thurber, C. H.; Abbott, E. R.; Brudzinski, M.; Grand, S. P.

    2015-12-01

    The states of Jalisco, Colima, and Michoacan in western Mexico overlie the boundary of the subducting Rivera and Cocos plates, presenting an appealing target for seismological inquiry to better understand the resulting mantle flow and regional volcanism. The different dips between the subducting plates is thought to provide a mantle conduit that has contributed to the Colima Volcanic Complex, but there is considerable debate on the shallowness of the Rivera plate and width of the resulting conduit. With data from the Mapping the Rivera Subduction Zone (MARS) and Colima Deep Seismic Experiment (CODEX) networks, two temporary broadband arrays deployed in the region between 2006-2008, we invert for three-dimensional P- and S- wave velocity and later attenuation structure of the upper ~80 km of the crust and mantle in the Jalisco region. We improve upon previous tomography work by utilizing double-difference tomography, which enables the use of higher-accuracy differential times to sharpen the earthquake locations, and the inclusion of S-wave data. Current models that utilize only analyst-picked phase arrivals from 590 earthquakes yield P-wave high velocity anomalies that suggest a slab under the coastal regions at 15-25 km depth, and low velocity anomalies that may be related to Colima Volcano or other geologic features. Most of the S-wave model is poorly resolved. We will use a newly developed auto-picker to attempt to substantially increase the size of the S-wave dataset and to a lesser extent the P wave dataset, in order to densify ray coverage and improve model resolution. Additionally, we plan to employ the waveforms from this expanded dataset to compute a path attenuation operator for each arrival, which will then be used to invert for 3D P and S-wave attenuation models. The attenuation models combined with the velocity models will provide multiple constraints on physical properties of the crust in this region as well as those of specific geologic features.

  14. Crosswell seismic studies in gas hydrate-bearing sediments: P wave velocity and attenuation tomography

    NASA Astrophysics Data System (ADS)

    Bauer, K.; Haberland, Ch.; Pratt, R. G.; Ryberg, T.; Weber, M. H.; Mallik Working Group

    2003-04-01

    We present crosswell seismic data from the Mallik 2002 Production Research Well Program, an international research project on Gas Hydrates in the Northwest Territories of Canada. The program participants include 8 partners; The Geological Survey of Canada (GSC), The Japan National Oil Corporation (JNOC), GeoForschungsZentrum Potsdam (GFZ), United States Geological Survey (USGS), United States Department of the Energy (USDOE), India Ministry of Petroleum and Natural Gas (MOPNG)/Gas Authority of India (GAIL) and the Chevron-BP-Burlington joint venture group. The crosswell seismic measurements were carried out by making use of two 1160 m deep observation wells (Mallik 3L-38 and 4L-38) both 45 m from and co-planar with the 1188 m deep production research well (5L-38). A high power piezo-ceramic source was used to generate sweeped signals with frequencies between 100 and 2000 Hz recorded with arrays of 8 hydrophones per depth level. A depth range between 800 and 1150 m was covered, with shot and receiver spacings of 0.75 m. High quality data could be collected during the survey which allow for application of a wide range of crosswell seismic methods. The initial data analysis included suppression of tube wave energy and picking of first arrivals. A damped least-squares algorithm was used to derive P-wave velocities from the travel time data. Next, t* values were derived from the decay of the amplitude spectra, which served as input parameters for a damped least-squares attenuation tomography. The initial results of the P-wave velocity and attenuation tomography reveal significant features reflecting the stratigraphic environment and allow for detection and eventually quantification of gas hydrate bearing sediments. A prominent correlation between P velocity and attenuation was found for the gas hydrate layers. This contradicts to the apparently more meaningful inverse correlation as it was determined for the gas hydrates at the Blake Ridge but supports the results from

  15. Improving the quantitative accuracy of optical-emission computed tomography by incorporating an attenuation correction: application to HIF1 imaging

    NASA Astrophysics Data System (ADS)

    Kim, E.; Bowsher, J.; Thomas, A. S.; Sakhalkar, H.; Dewhirst, M.; Oldham, M.

    2008-10-01

    Optical computed tomography (optical-CT) and optical-emission computed tomography (optical-ECT) are new techniques for imaging the 3D structure and function (including gene expression) of whole unsectioned tissue samples. This work presents a method of improving the quantitative accuracy of optical-ECT by correcting for the 'self'-attenuation of photons emitted within the sample. The correction is analogous to a method commonly applied in single-photon-emission computed tomography reconstruction. The performance of the correction method was investigated by application to a transparent cylindrical gelatin phantom, containing a known distribution of attenuation (a central ink-doped gelatine core) and a known distribution of fluorescing fibres. Attenuation corrected and uncorrected optical-ECT images were reconstructed on the phantom to enable an evaluation of the effectiveness of the correction. Significant attenuation artefacts were observed in the uncorrected images where the central fibre appeared ~24% less intense due to greater attenuation from the surrounding ink-doped gelatin. This artefact was almost completely removed in the attenuation-corrected image, where the central fibre was within ~4% of the others. The successful phantom test enabled application of attenuation correction to optical-ECT images of an unsectioned human breast xenograft tumour grown subcutaneously on the hind leg of a nude mouse. This tumour cell line had been genetically labelled (pre-implantation) with fluorescent reporter genes such that all viable tumour cells expressed constitutive red fluorescent protein and hypoxia-inducible factor 1 transcription-produced green fluorescent protein. In addition to the fluorescent reporter labelling of gene expression, the tumour microvasculature was labelled by a light-absorbing vasculature contrast agent delivered in vivo by tail-vein injection. Optical-CT transmission images yielded high-resolution 3D images of the absorbing contrast agent, and

  16. A deconvolution function for single photon emission computed tomography with constant attenuation

    SciTech Connect

    Tomitani, T.

    1986-02-01

    A shift-invariant spatial deconvolution function for single-photon-emission computerized tomography with constant attenuation is presented. Image reconstruction algorithm is similar to conventional convolution-back-projection algorithm except that exponential weight is applied in backprojection process. The deconvolution function was obtained as a solution of a generalized Schlomilch's integral equation. A method to solve the integral equation is described briefly. The present deconvolution function is incorporated with frequency roll-off and image resolution can be preset. At the extreme of ideal image reconstruction, the deconvolution function is identical to that deduced by Kim et al. and its Fourier transform was proved to be identical to the filter deduced by Tretiak and Delaney and Gullburg and Budinger. Variance of the reconstructed image was analyzed and some numerical results were given. The algorithm was tested with computer simulation.

  17. Decreased light attenuation in cerebral cortex during cerebral edema detected using optical coherence tomography

    PubMed Central

    Rodriguez, Carissa L. R.; Szu, Jenny I.; Eberle, Melissa M.; Wang, Yan; Hsu, Mike S.; Binder, Devin K.; Park, B. Hyle

    2014-01-01

    Abstract. Cerebral edema develops in response to a variety of conditions, including traumatic brain injury and stroke, and contributes to the poor prognosis associated with these injuries. This study examines the use of optical coherence tomography (OCT) for detecting cerebral edema in vivo. Three-dimensional imaging of an in vivo water intoxication model in mice was performed using a spectral-domain OCT system centered at 1300 nm. The change in attenuation coefficient was calculated and cerebral blood flow was analyzed using Doppler OCT techniques. We found that the average attenuation coefficient in the cerebral cortex decreased over time as edema progressed. The initial decrease began within minutes of inducing cerebral edema and a maximum decrease of 8% was observed by the end of the experiment. Additionally, cerebral blood flow slowed during late-stage edema. Analysis of local regions revealed the same trend at various locations in the brain, consistent with the global nature of the cerebral edema model used in this study. These results demonstrate that OCT is capable of detecting in vivo optical changes occurring due to cerebral edema and highlights the potential of OCT for precise spatiotemporal detection of cerebral edema. PMID:25674578

  18. Ultralow dose computed tomography attenuation correction for pediatric PET CT using adaptive statistical iterative reconstruction

    SciTech Connect

    Brady, Samuel L.; Shulkin, Barry L.

    2015-02-15

    Purpose: To develop ultralow dose computed tomography (CT) attenuation correction (CTAC) acquisition protocols for pediatric positron emission tomography CT (PET CT). Methods: A GE Discovery 690 PET CT hybrid scanner was used to investigate the change to quantitative PET and CT measurements when operated at ultralow doses (10–35 mA s). CT quantitation: noise, low-contrast resolution, and CT numbers for 11 tissue substitutes were analyzed in-phantom. CT quantitation was analyzed to a reduction of 90% volume computed tomography dose index (0.39/3.64; mGy) from baseline. To minimize noise infiltration, 100% adaptive statistical iterative reconstruction (ASiR) was used for CT reconstruction. PET images were reconstructed with the lower-dose CTAC iterations and analyzed for: maximum body weight standardized uptake value (SUV{sub bw}) of various diameter targets (range 8–37 mm), background uniformity, and spatial resolution. Radiation dose and CTAC noise magnitude were compared for 140 patient examinations (76 post-ASiR implementation) to determine relative dose reduction and noise control. Results: CT numbers were constant to within 10% from the nondose reduced CTAC image for 90% dose reduction. No change in SUV{sub bw}, background percent uniformity, or spatial resolution for PET images reconstructed with CTAC protocols was found down to 90% dose reduction. Patient population effective dose analysis demonstrated relative CTAC dose reductions between 62% and 86% (3.2/8.3–0.9/6.2). Noise magnitude in dose-reduced patient images increased but was not statistically different from predose-reduced patient images. Conclusions: Using ASiR allowed for aggressive reduction in CT dose with no change in PET reconstructed images while maintaining sufficient image quality for colocalization of hybrid CT anatomy and PET radioisotope uptake.

  19. Magnetoacoustic Tomography with Magnetic Induction: Bioimepedance reconstruction through vector source imaging

    PubMed Central

    Mariappan, Leo; He, Bin

    2013-01-01

    Magneto acoustic tomography with magnetic induction (MAT-MI) is a technique proposed to reconstruct the conductivity distribution in biological tissue at ultrasound imaging resolution. A magnetic pulse is used to generate eddy currents in the object, which in the presence of a static magnetic field induces Lorentz force based acoustic waves in the medium. This time resolved acoustic waves are collected with ultrasound transducers and, in the present work, these are used to reconstruct the current source which gives rise to the MAT-MI acoustic signal using vector imaging point spread functions. The reconstructed source is then used to estimate the conductivity distribution of the object. Computer simulations and phantom experiments are performed to demonstrate conductivity reconstruction through vector source imaging in a circular scanning geometry with a limited bandwidth finite size piston transducer. The results demonstrate that the MAT-MI approach is capable of conductivity reconstruction in a physical setting. PMID:23322761

  20. Multi-phase classification by a least-squares support vector machine approach in tomography images of geological samples

    NASA Astrophysics Data System (ADS)

    Khan, Faisal; Enzmann, Frieder; Kersten, Michael

    2016-03-01

    Image processing of X-ray-computed polychromatic cone-beam micro-tomography (μXCT) data of geological samples mainly involves artefact reduction and phase segmentation. For the former, the main beam-hardening (BH) artefact is removed by applying a best-fit quadratic surface algorithm to a given image data set (reconstructed slice), which minimizes the BH offsets of the attenuation data points from that surface. A Matlab code for this approach is provided in the Appendix. The final BH-corrected image is extracted from the residual data or from the difference between the surface elevation values and the original grey-scale values. For the segmentation, we propose a novel least-squares support vector machine (LS-SVM, an algorithm for pixel-based multi-phase classification) approach. A receiver operating characteristic (ROC) analysis was performed on BH-corrected and uncorrected samples to show that BH correction is in fact an important prerequisite for accurate multi-phase classification. The combination of the two approaches was thus used to classify successfully three different more or less complex multi-phase rock core samples.

  1. Seismic attenuation and scattering tomography of rock samples using stochastic wavefields: linking seismology, volcanology, and rock physics.

    NASA Astrophysics Data System (ADS)

    Fazio, Marco; De Siena, Luca; Benson, Phillip

    2016-04-01

    Seismic attenuation and scattering are two attributes that can be linked with porosity and permeability in laboratory experiments. When measuring these two quantities using seismic waveforms recorder at lithospheric and volcanic scales the areas of highest heterogeneity, as batches of melt and zones of high deformation, produce anomalous values of the measured quantities, the seismic quality factor and scattering coefficient. When employed as indicators of heterogeneity and absorption in volcanic areas these anomalous effects become strong indicators of magma accumulation and tectonic boundaries, shaping magmatic chambers and conduit systems. We perform attenuation and scattering measurements and imaging using seismic waveforms produced in laboratory experiments, at frequencies ranging between the kHz and MHz. As attenuation and scattering are measured from the shape of the envelopes, disregarding phases, we are able to connect the observations with the micro fracturing and petrological quantities previously measured on the sample. Connecting the imaging of dry and saturated samples via these novel attributes with the burst of low-period events with increasing saturation and deformation is a challenge. Its solution could plant the seed for better relating attenuation and scattering tomography measurements to the presence of fluids and gas, therefore creating a novel path for reliable porosity and permeability tomography. In particular for volcanoes, being able to relate attenuation/scattering measurements with low-period micro seismicity could deliver new data to settle the debate about if both source and medium can produce seismic resonance.

  2. ATTENUATION OF THE GANGLION CELL LAYER IN A PREMATURE INFANT REVEALED WITH HANDHELD SPECTRAL DOMAIN OPTICAL COHERENCE TOMOGRAPHY

    PubMed Central

    Goldberg, Mara R.; Zakka, Fouad R.; Carroll, Joseph J.

    2016-01-01

    Purpose: To report on subclinical retinal abnormalities shown through handheld spectral domain optical coherence tomography on a premature infant. Methods: Case report. Results: The initial and follow-up exams on a premature infant revealed severely attenuated ganglion cell and nerve fiber layers. There was cystoid macular edema in both eyes at the initial visits, which resolved by the 1-year follow-up. Discussion: Optical coherence tomography can reveal significant retinal abnormalities in premature infants which are not detectable through funduscopic exam. Documenting such findings may be useful for the comprehensive management of vision problems in children with a history of premature birth. PMID:26529438

  3. Attenuation tomography in the western central Andes: A detailed insight into the structure of a magmatic arc

    NASA Astrophysics Data System (ADS)

    Haberland, Christian; Rietbrock, Andreas

    2001-06-01

    High-quality data from 1498 local earthquakes recorded by the PISCO '94 (Proyecto de Investigatión Sismológica de la Cordillera Occidental, 1994) and ANCORP '96 (Andean Continental Research Project, 1996) temporary seismological networks allowed the detailed determination of the three-dimensional (3-D) attenuation structure (Qp-1) beneath the recent magmatic arc in the western central Andes (20° to 24°S). Assuming a frequency-independent Qp-1 in a frequency band between 1 and 30 Hz, whole path attenuation (t*) was estimated from the amplitude spectra of the P waves using spectral ratios and a spectral inversion technique. The damped least squares inversion (tomography) of the data reveals a complex attenuation structure. Crust and mantle of the forearc and subducting slab are generally characterized by low attenuation (Qp > 1000). Crust and mantle beneath the magmatic arc show elevated attenuation. The strongest anomaly of extremely low Qp is found in the crust between 22° and 23°S beneath the recent volcanic arc (Qp < 100). N-S variations can be observed: The western flank of the crustal attenuation anomaly follows the curved course of the volcanic front. North of 21°S the attenuation is less developed. In the northern part of the study area the low-Qp zone penetrates in the forearc mantle down to the subducting slab. In the south a deeper zone of high attenuation is resolved between 23° and 24°S directly above the subducting slab. Low Qp in the mantle correlates with earthquake clusters. The strong crustal attenuation is confined to the distribution of young ignimbrites and silicic volcanism and is interpreted as a thermally weakened zone with partial melts. The attenuation pattern in the upper mantle might reflect the variable extent of the asthenosphere and maps variations of subduction-related hydration processes in the mantle wedge from slab-derived fluids.

  4. Nonlinear inversion of borehole-radar tomography data to reconstruct velocity and attenuation distribution in earth materials

    USGS Publications Warehouse

    Zhou, C.; Liu, L.; Lane, J.W.

    2001-01-01

    A nonlinear tomographic inversion method that uses first-arrival travel-time and amplitude-spectra information from cross-hole radar measurements was developed to simultaneously reconstruct electromagnetic velocity and attenuation distribution in earth materials. Inversion methods were developed to analyze single cross-hole tomography surveys and differential tomography surveys. Assuming the earth behaves as a linear system, the inversion methods do not require estimation of source radiation pattern, receiver coupling, or geometrical spreading. The data analysis and tomographic inversion algorithm were applied to synthetic test data and to cross-hole radar field data provided by the US Geological Survey (USGS). The cross-hole radar field data were acquired at the USGS fractured-rock field research site at Mirror Lake near Thornton, New Hampshire, before and after injection of a saline tracer, to monitor the transport of electrically conductive fluids in the image plane. Results from the synthetic data test demonstrate the algorithm computational efficiency and indicate that the method robustly can reconstruct electromagnetic (EM) wave velocity and attenuation distribution in earth materials. The field test results outline zones of velocity and attenuation anomalies consistent with the finding of previous investigators; however, the tomograms appear to be quite smooth. Further work is needed to effectively find the optimal smoothness criterion in applying the Tikhonov regularization in the nonlinear inversion algorithms for cross-hole radar tomography. ?? 2001 Elsevier Science B.V. All rights reserved.

  5. High-resolution 3-D P wave attenuation structure of the New Madrid Seismic Zone using local earthquake tomography

    NASA Astrophysics Data System (ADS)

    Bisrat, Shishay T.; DeShon, Heather R.; Pesicek, Jeremy; Thurber, Clifford

    2014-01-01

    A three-dimensional (3-D), high-resolution P wave seismic attenuation model for the New Madrid Seismic Zone (NMSZ) is determined using P wave path attenuation (t*) values of small-magnitude earthquakes (MD < 3.9). Events were recorded at 89 broadband and short-period seismometers of the Cooperative New Madrid Seismic Zone Network and 40 short-period seismometers of the Portable Array for Numerical Data Acquisition experiment. The amplitude spectra of all the earthquakes are simultaneously inverted for source, path (t*), and site parameters. The t* values are inverted for QP using local earthquake tomography methods and a known 3-D P wave velocity model for the region. The four major seismicity arms of the NMSZ exhibit reduced QP (higher attenuation) than the surrounding crust. The highest attenuation anomalies coincide with areas of previously reported high swarm activity attributed to fluid-rich fractures along the southeast extension of the Reelfoot fault. The QP results are consistent with previous attenuation studies in the region, which showed that active fault zones and fractured crust in the NMSZ are highly attenuating.

  6. Noninvasive monitoring of photodynamic therapy on skin neoplastic lesions using the optical attenuation coefficient measured by optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Goulart, Viviane P.; dos Santos, Moisés O.; Latrive, Anne; Freitas, Anderson Z.; Correa, Luciana; Zezell, Denise M.

    2015-05-01

    Photodynamic therapy (PDT) has become a promising alternative for treatment of skin lesions such as squamous cell carcinoma. We propose a method to monitor the effects of PDT in a noninvasive way by using the optical attenuation coefficient (OAC) calculated from optical coherence tomography (OCT) images. We conducted a study on mice with chemically induced neoplastic lesions and performed PDT on these lesions using homemade photosensitizers. The response of neoplastic lesions to therapy was monitored using, at the same time, macroscopic clinical visualization, histopathological analysis, OCT imaging, and OCT-based attenuation coefficient measurement. Results with all four modalities demonstrated a positive response to treatment. The attenuation coefficient was found to be 1.4 higher in skin lesions than in healthy tissue and it decreased after therapy. This study shows that the OAC is a potential tool to noninvasively assess the evolution of skin neoplastic lesions with time after treatment.

  7. 2-D Coda and Direct Wave Attenuation Tomography in Northern Italy

    SciTech Connect

    Morasca, P; Mayeda, K; Gok, R; Phillips, W S; Malagnini, L

    2007-10-17

    A 1-D coda method was proposed by Mayeda et al. (2003) in order to obtain stable seismic source moment-rate spectra using narrowband coda envelope measurements. That study took advantage of the averaging nature of coda waves to derive stable amplitude measurements taking into account all propagation, site, and Sto-coda transfer function effects. Recently this methodology was applied to micro earthquake data sets from three sub-regions of northern Italy (i.e., western Alps, northern Apennines and eastern Alps). Since the study regions were small, ranging between local-to-near-regional distances, the simple 1-D path assumptions used in the coda method worked very well. The lateral complexity of this region would suggest, however, that a 2-D path correction might provide even better results if the datasets were combined, especially when paths traverse larger distances and complicated regions. The structural heterogeneity of northern Italy makes the region ideal to test the extent to which coda variance can be reduced further by using a 2-D Q tomography technique. The approach we use has been developed by Phillips et al. (2005) and is an extension of previous amplitude ratio techniques to remove source effects from the inversion. The method requires some assumptions such as isotropic source radiation which is generally true for coda waves. Our results are compared against direct Swave inversions for 1/Q and results from both share very similar attenuation features that coincide with known geologic structures. We compare our results with those derived from direct waves as well as some recent results from northern California obtained by Mayeda et al. (2005) which tested the same tomographic methodology applied in this study to invert for 1/Q. We find that 2-D coda path corrections for this region significantly improve upon the 1-D corrections, in contrast to California where only a marginal improvement was observed. We attribute this difference to stronger lateral

  8. Hybrid Positron Emission Tomography/Magnetic Resonance Imaging: Challenges, Methods, and State of the Art of Hardware Component Attenuation Correction.

    PubMed

    Paulus, Daniel H; Quick, Harald H

    2016-10-01

    Attenuation correction (AC) is an essential step in the positron emission tomography (PET) data reconstruction process to provide accurate and quantitative PET images. The introduction of PET/magnetic resonance (MR) hybrid systems has raised new challenges but also possibilities regarding PET AC. While in PET/computed tomography (CT) imaging, CT images can be converted to attenuation maps, MR images in PET/MR do not provide a direct relation to attenuation. For the AC of patient tissues, new methods have been suggested, for example, based on image segmentation, atlas registration, or ultrashort echo time MR sequences. Another challenge in PET/MR hybrid imaging is AC of hardware components that are placed in the PET/MR field of view, such as the patient table or various radiofrequency (RF) coils covering the body of the patient for MR signal detection. Hardware components can be categorized into 4 different groups: (1) patient table, (2) RF receiver coils, (3) radiation therapy equipment, and (4) PET and MR imaging phantoms. For rigid and stationary objects, such as the patient table and some RF coils like the head/neck coil, predefined CT-based attenuation maps stored on the system can be used for automatic AC. Flexible RF coils are not included into the AC process till now because they can vary in position as well as in shape and are not accurately detectable with the PET/MR system.This work summarizes challenges, established methods, new concepts, and the state of art in hardware component AC in the context of PET/MR hybrid imaging. The work also gives an overview of PET/MR hardware devices, their attenuation properties, and their effect on PET quantification. PMID:27175550

  9. Hybrid Positron Emission Tomography/Magnetic Resonance Imaging: Challenges, Methods, and State of the Art of Hardware Component Attenuation Correction.

    PubMed

    Paulus, Daniel H; Quick, Harald H

    2016-10-01

    Attenuation correction (AC) is an essential step in the positron emission tomography (PET) data reconstruction process to provide accurate and quantitative PET images. The introduction of PET/magnetic resonance (MR) hybrid systems has raised new challenges but also possibilities regarding PET AC. While in PET/computed tomography (CT) imaging, CT images can be converted to attenuation maps, MR images in PET/MR do not provide a direct relation to attenuation. For the AC of patient tissues, new methods have been suggested, for example, based on image segmentation, atlas registration, or ultrashort echo time MR sequences. Another challenge in PET/MR hybrid imaging is AC of hardware components that are placed in the PET/MR field of view, such as the patient table or various radiofrequency (RF) coils covering the body of the patient for MR signal detection. Hardware components can be categorized into 4 different groups: (1) patient table, (2) RF receiver coils, (3) radiation therapy equipment, and (4) PET and MR imaging phantoms. For rigid and stationary objects, such as the patient table and some RF coils like the head/neck coil, predefined CT-based attenuation maps stored on the system can be used for automatic AC. Flexible RF coils are not included into the AC process till now because they can vary in position as well as in shape and are not accurately detectable with the PET/MR system.This work summarizes challenges, established methods, new concepts, and the state of art in hardware component AC in the context of PET/MR hybrid imaging. The work also gives an overview of PET/MR hardware devices, their attenuation properties, and their effect on PET quantification.

  10. Oral immunization of broiler chickens against necrotic enteritis with an attenuated Salmonella vaccine vector expressing Clostridium perfringens antigens.

    PubMed

    Kulkarni, R R; Parreira, V R; Sharif, S; Prescott, J F

    2008-08-01

    Necrotic enteritis (NE) in broiler chickens is caused by Clostridium perfringens but currently no effective vaccine is available. Our previous study showed that certain C. perfringens secreted proteins when administered intramuscularly protected chickens against experimental infection. In the current study, genes encoding three C. perfringens proteins: fructose-biphosphate-aldolase (FBA), pyruvate:ferredoxin-oxidoreductase (PFOR) and hypothetical protein (HP), were cloned into an avirulent Salmonella enterica sv. typhimurium vaccine vector. Broiler chickens immunized orally with recombinant Salmonella expressing FBA or HP proteins were significantly protected against NE challenge. Immunized birds developed serum and mucosal antibodies to both clostridial and Salmonella antigens. This study showed the oral immunizing ability of two C. perfringens antigens against NE in broiler chickens through an attenuated Salmonella vaccine vector. PMID:18597901

  11. [Evaluation of non-uniform attenuation correction using simultaneous transmission and emission computed tomography--basic analysis with myocardial phantom].

    PubMed

    Otake, H; Yukihiro, M; Fukushima, Y; Imai, T; Hosono, K; Hatori, N; Watanabe, N; Hirano, T; Inoue, T; Takahashi, M; Ban, R; Endo, K

    1996-03-01

    Simultaneous transmission emission protocol (STEP), developed for the non-uniform attenuation correction of single photon emission computed tomography (SPECT) was evaluated using the cardiac phantom prepared with and without a myocardial wall defect. Emission computed tomography (ECT) of the cardiac phantom using 201Tl was acquired. Transmission data (TCT) were taken using a line source of 99mTc. Myocardial images with STEP method were superior in the homogeneity of intramyocardial radioactivity and spatial resolution to the conventional SPECT images. This is an excellent method because of the accurate matching position between TCT and ECT images and shortening the examination time by simultaneous data acquisition. It would be clinically useful for diagnosing various myocardial diseases.

  12. Infectivity of attenuated poxvirus vaccine vectors and immunogenicity of a raccoonpox vectored rabies vaccine in the Brazilian Free-tailed bat (Tadarida brasiliensis)

    USGS Publications Warehouse

    Stading, Benjamin; Osorio, Jorge E.; Velasco-Villa, Andres; Smotherman, Michael; Kingstad-Bakke, Brock; Rocke, Tonie E.

    2016-01-01

    Bats (Order Chiroptera) are an abundant group of mammals with tremendous ecological value as insectivores and plant dispersers, but their role as reservoirs of zoonotic diseases has received more attention in the last decade. With the goal of managing disease in free-ranging bats, we tested modified vaccinia Ankara (MVA) and raccoon poxvirus (RCN) as potential vaccine vectors in the Brazilian Free-tailed bat (Tadarida brasiliensis), using biophotonic in vivo imaging and immunogenicity studies. Animals were administered recombinant poxviral vectors expressing the luciferase gene (MVA-luc, RCN-luc) through oronasal (ON) or intramuscular (IM) routes and subsequently monitored for bioluminescent signal indicative of viral infection. No clinical illness was noted after exposure to any of the vectors, and limited luciferase expression was observed. Higher and longer levels of expression were observed with the RCN-luc construct. When given IM, luciferase expression was limited to the site of injection, while ON exposure led to initial expression in the oral cavity, often followed by secondary replication at another location, likely the gastric mucosa or gastric associated lymphatic tissue. Viral DNA was detected in oral swabs up to 7 and 9 days post infection (dpi) for MVA and RCN, respectively. While no live virus was detected in oral swabs from MVA-infected bats, titers up to 3.88 x 104 PFU/ml were recovered from oral swabs of RCN-infected bats. Viral DNA was also detected in fecal samples from two bats inoculated IM with RCN, but no live virus was recovered. Finally, we examined the immunogenicity of a RCN based rabies vaccine (RCN-G) following ON administration. Significant rabies neutralizing antibody titers were detected in the serum of immunized bats using the rapid fluorescence focus inhibition test (RFFIT). These studies highlight the safety and immunogenicity of attenuated poxviruses and their potential use as vaccine vectors in bats.

  13. Application of Chang's attenuation correction technique for single-photon emission computed tomography partial angle acquisition of Jaszczak phantom.

    PubMed

    Saha, Krishnendu; Hoyt, Sean C; Murray, Bryon M

    2016-01-01

    The acquisition and processing of the Jaszczak phantom is a recommended test by the American College of Radiology for evaluation of gamma camera system performance. To produce the reconstructed phantom image for quality evaluation, attenuation correction is applied. The attenuation of counts originating from the center of the phantom is greater than that originating from the periphery of the phantom causing an artifactual appearance of inhomogeneity in the reconstructed image and complicating phantom evaluation. Chang's mathematical formulation is a common method of attenuation correction applied on most gamma cameras that do not require an external transmission source such as computed tomography, radionuclide sources installed within the gantry of the camera or a flood source. Tomographic acquisition can be obtained in two different acquisition modes for dual-detector gamma camera; one where the two detectors are at 180° configuration and acquire projection images for a full 360°, and the other where the two detectors are positioned at a 90° configuration and acquire projections for only 180°. Though Chang's attenuation correction method has been used for 360° angle acquisition, its applicability for 180° angle acquisition remains a question with one vendor's camera software producing artifacts in the images. This work investigates whether Chang's attenuation correction technique can be applied to both acquisition modes by the development of a Chang's formulation-based algorithm that is applicable to both modes. Assessment of attenuation correction performance by phantom uniformity analysis illustrates improved uniformity with the proposed algorithm (22.6%) compared to the camera software (57.6%). PMID:27051167

  14. Three-dimensional X-ray micro-computed tomography analysis of polymerization shrinkage vectors in flowable composite.

    PubMed

    Takemura, Yukihiko; Hanaoka, Koji; Kawamata, Ryota; Sakurai, Takashi; Teranaka, Toshio

    2014-01-01

    The polymerization shrinkage of flowable resin composites was evaluated using air bubbles as traceable markers. Three different surface treatments i.e. an adhesive silane coupling agent, a separating silane coupling agent, and a combination of both, were applied to standard cavities. Before and after polymerization, X-ray micro-computed tomography images were recorded. Their superimposition and comparison allowed position changes of the markers to be visualized as vectors. The movement of the markers in the resin composite was, therefore, quantitatively evaluated from the tomographic images. Adhesion was found to significantly influence shrinkage patterns. The method used here could be employed to visualize shrinkage vectors and shrinkage volume. PMID:24988881

  15. Evaluation of Moisture-Related Attenuation Coefficient and Water Diffusion Velocity in Human Skin Using Optical Coherence Tomography

    PubMed Central

    Lee, Cheng-Kuang; Tsai, Meng-Tsan; Chang, Feng-Yu; Yang, Chih-Hsun; Shen, Su-Chin; Yuan, Ouyang; Yang, Chih-He

    2013-01-01

    In this study, time-resolved optical coherence tomography (OCT) scanning images of the process of water diffusion in the skin that illustrate the enhancement in the backscattered intensities due to the increased water concentration are presented. In our experiments, the water concentration in the skin was increased by soaking the hand in water, and the same region of the skin was scanned and measured with the OCT system and a commercial moisture monitor every three minutes. To quantitatively analyze the moisture-related optical properties and the velocity of water diffusion in human skin, the attenuation coefficients of the skin, including the epidermis and dermis layers, were evaluated. Furthermore, the evaluated attenuation coefficients were compared with the measurements made using the commercial moisture monitor. The results demonstrate that the attenuation coefficient increases as the water concentration increases. Furthermore, by evaluating the positions of center-of mass of the backscattered intensities from OCT images, the diffusion velocity can be estimated. In contrast to the commercial moisture monitor, OCT can provide three-dimensional structural images of the skin and characterize its optical property, which together can be used to observe morphological changes and quantitatively evaluate the moisture-related attenuation coefficients in different skin layers. PMID:23529149

  16. The deeper structure of the southern Dead Sea basin derived from neural network analysis of velocity and attenuation tomography

    NASA Astrophysics Data System (ADS)

    Braeuer, Benjamin; Haberland, Christian; Bauer, Klaus; Weber, Michael

    2014-05-01

    The Dead Sea basin is a pull-apart basin at the Dead Sea transform fault, the boundary between the African and the Arabian plates. Though the DSB has been studied for a long time, the available knowledge - based mainly on surface geology, drilling and seismic reflection surveys - gives only a partial picture of its shallow structure. Therefore, within the framework of the international DESIRE (DEad Sea Integrated REsearch) project, a dense temporary local seismological network was operated in the southern Dead Sea area. Within 18 month of recording 650 events were detected. In addition to an already published tomography study revealing the distribution of P velocities and the Vp/Vs ratios a 2D P-wave attenuation tomography (parameter Qp) was performed. The neural network technique of Self-organizing maps (SOM) is used for the joint interpretation of these three parameters (Vp, Vp/Vs, Qp). The resulting clusters in the petrophysical parameter space are assigned to the main lithological units below the southern part of the Dead Sea basin: (1) The basin sediments characterized by strong attenuation, high vp/vs ratios and low P velocities. (2) The pre-basin sediments characterized by medium to strong attenuation, low Vp/Vs ratios and medium P velocities. (3) The basement characterized by low to moderate attenuation, medium vp/vs ratios and high P velocities. Thus, the asymmetric southern Dead Sea basin is filled with basin sediments down to depth of 7 to 12 km. Below the basin sediments, the pre-basin sediments are extending to a depth between 13 and 18 km.

  17. Multi-scale reasonable attenuation tomography analysis (MuRAT): An imaging algorithm designed for volcanic regions

    NASA Astrophysics Data System (ADS)

    De Siena, L.; Thomas, C.; Aster, R.

    2014-05-01

    The attenuation of body-wave amplitudes with propagation distance can be used to provide detailed tomographic images of seismic interfaces, fluid reservoirs, and melt batches in the crust. The high sensitivity of body-wave energies to high-scattering structures becomes an obstacle when we try to apply attenuation tomography to small-scale volcanic media, where we must take into account the complexities induced by strong heterogeneous scattering, topography, and uncertain source modeling in the recorded wave-fields. The MuRAT code uses a source- and site-independent coda-normalization method to obtain frequency-dependent measurements of P-to-coda and S-to-coda energy ratios. The code inverts these data for both the geometrical spreading factor and the spatially-dependent quality factors (Q), providing additional attenuation information in the regions where velocity tomography is available. The high sensitivity of coda-waves to highly heterogeneous structures highlights zones of anomalous scattering, which may corrupt amplitude-dependent attenuation measurements, and where basal assumptions of linear optics may go unfulfilled. A multi-step tomographic inversion increases the stability of the results obtained in regions of high heterogeneity (e.g., the volcanic edifice) by the inclusion of data corresponding to either sources or stations located in regions of lower heterogeneity. On the other hand, a mere increase in the number of rays entirely contained in the heterogeneous structures affects both the stability and the effective resolution of the results. We apply the code to two small waveform datasets recorded at an active (Mount St. Helens) and at a quiescent (Mount Vesuvius) volcano. The results show that the seismicity located inside or under the volcanic edifice produces an increase of the low-frequency energy ratios with travel time in both areas. In our interpretation, the anomalous concentration of energy which affects any waveform recorded on the cone

  18. Clinical evaluation of the computed tomography attenuation correction map for myocardial perfusion imaging: the potential for incidental pathology detection.

    PubMed

    Tootell, Andrew; Vinjamuri, Sobhan; Elias, Mark; Hogg, Peter

    2012-11-01

    The benefits of hybrid imaging in nuclear medicine have been proven to increase the diagnostic accuracy and sensitivity of many procedures by localizing or characterizing lesions or by correcting emission data to more accurately represent radiopharmaceutical distribution. Single-photon emission computed tomography/computed tomography (SPECT/CT) has a significant role in the diagnosis and follow-up of ischaemic heart disease with attenuation correction data being obtained on an integrated CT scanner. Initially, the CT component of hybrid SPECT/CT systems was what could be described as low specification utilizing fixed output parameters. As technology has progressed, the CT component of newer systems has specifications that are identical to that of stand-alone diagnostic systems. Irrespective of the type of scanner used, the computed tomography attenuation correction (CTAC) for myocardial perfusion imaging produces low-quality, limited-range CT images of the chest that include the mediastinum, lung fields and surrounding soft tissues. The diagnostic potential of this data set is unclear; yet, examples exist whereby significant pathology can be identified and investigated further. Despite guidance from a number of professional bodies suggesting that evaluation of the resulting images for every medical exposure be carried out, there is no indication as to whether this should include the evaluation of CTAC images. This review aims to initiate discussion by examining the ethical, legal, financial and practical issues (e.g. CT specification and image quality) surrounding the clinical evaluation of the CTAC for myocardial perfusion imaging images. Reference to discussions that have taken place, and continue to take place, in other modalities, current European and UK legislations, and guidelines and research in the field will be made.

  19. A field assessment of high resolution aquifer characterization: Coupling of hydraulic travel time and hydraulic attenuation tomography

    NASA Astrophysics Data System (ADS)

    Brauchler, R.; Hu, R.; Dietrich, P.; Sauter, M.

    2009-12-01

    Knowledge about the spatial variations in hydraulic properties plays an important role controlling solute movement in saturated flow systems. Traditional hydrogeological approaches appear to have difficulties providing high resolution parameter estimates. Thus, we have decided to develop an approach coupling hydraulic travel time and attenuation tomography. Hydraulic travel time tomography is based on the transformation of the transient ground water flow equation into the eikonal equation using an asymptotic approach. The eikonal equation can be solved with ray tracing techniques, which allow the calculation of pressure propagation along trajectories. As the travel time of a hydraulic signal depends on the diffusivity of the investigated media, it is difficult to separate it into its components hydraulic conductivity and specific storage. In order to overcome this problem we perform next to the travel time inversion an inversion which is based on the relationship between attenuation of a hydraulic signal travelling between source and receiver, and the specific storage of the investigated media. Both inversion techniques are based on ray tracing, which allows the inversion of large data sets in a short time on a common PC. The attenuation and travel time based inversion approaches are naturally complementary: Hydraulic travel times are determined by the hydraulic diffusivity, a combination of hydraulic conductivity and specific storage, whereas the attenuation is determined solely by specific storage. Thus, combining these two approaches will allow the independent identification of hydraulic conductivity and specific storage. The potential of our hydraulic tomographical approach was investigated at a well-characterized sand and gravel aquifer located in the Leine River valley near Goettingen, Germany. The data base for the hydraulic inversion consists of 400 pressure cross-hole slug tests performed between five wells in which the positions of the sources (injection

  20. Attenuated and protease-profile modified sendai virus vectors as a new tool for virotherapy of solid tumors.

    PubMed

    Zimmermann, Martina; Armeanu-Ebinger, Sorin; Bossow, Sascha; Lampe, Johanna; Smirnow, Irina; Schenk, Andrea; Lange, Sebastian; Weiss, Thomas S; Neubert, Wolfgang; Lauer, Ulrich M; Bitzer, Michael

    2014-01-01

    Multiple types of oncolytic viruses are currently under investigation in clinical trials. To optimize therapeutic outcomes it is believed that the plethora of different tumor types will require a diversity of different virus types. Sendai virus (SeV), a murine parainfluenza virus, displays a broad host range, enters cells within minutes and already has been applied safely as a gene transfer vector in gene therapy patients. However, SeV spreading naturally is abrogated in human cells due to a lack of virus activating proteases. To enable oncolytic applications of SeV we here engineered a set of novel recombinant vectors by a two-step approach: (i) introduction of an ubiquitously recognized cleavage-motive into SeV fusion protein now enabling continuous spreading in human tissues, and (ii) profound attenuation of these rSeV by the knockout of viral immune modulating accessory proteins. When employing human hepatoma cell lines, newly generated SeV variants now reached high titers and induced a profound tumor cell lysis. In contrast, virus release from untransformed human fibroblasts or primary human hepatocytes was found to be reduced by about three log steps in a time course experiment which enables the cumulation of kinetic differences of the distinct phases of viral replication such as primary target cell infection, target cell replication, and progeny virus particle release. In a hepatoma xenograft animal model we found a tumor-specific spreading of our novel recombinant SeV vectors without evidence of biodistribution into non-malignant tissues. In conclusion, we successfully developed novel tumor-selective oncolytic rSeV vectors, constituting a new tool for virotherapy of solid tumors being ready for further preclinical and clinical development to address distinct tumor types. PMID:24598703

  1. Full Wave Analysis of RF Signal Attenuation in a Lossy Cave using a High Order Time Domain Vector Finite Element Method

    SciTech Connect

    Pingenot, J; Rieben, R; White, D

    2004-12-06

    We present a computational study of signal propagation and attenuation of a 200 MHz dipole antenna in a cave environment. The cave is modeled as a straight and lossy random rough wall. To simulate a broad frequency band, the full wave Maxwell equations are solved directly in the time domain via a high order vector finite element discretization using the massively parallel CEM code EMSolve. The simulation is performed for a series of random meshes in order to generate statistical data for the propagation and attenuation properties of the cave environment. Results for the power spectral density and phase of the electric field vector components are presented and discussed.

  2. Investigation of Attenuation Correction for Small-Animal Single Photon Emission Computed Tomography

    PubMed Central

    Lee, Hsin-Hui; Chen, Jyh-Cheng

    2013-01-01

    The quantitative accuracy of SPECT is limited by photon attenuation and scatter effect when photons interact with atoms. In this study, we developed a new attenuation correction (AC) method, CT-based mean attenuation correction (CTMAC) method, and compared it with various methods that were often used currently to assess the AC phenomenon by using the small-animal SPECT/CT data that were acquired from various physical phantoms and a rat. The physical phantoms and an SD rat, which were injected with 99mTc, were scanned by a parallel-hole small-animal SPECT, and then they were imaged by the 80 kVp micro-CT. Scatter was estimated and corrected by the triple-energy window (TEW) method. Absolute quantification was derived from a known activity point source scan. In the physical-phantom studies, we compared the images with original, scatter correction (SC) only, and the scatter-corrected images with AC performed by using Chang's method, CT-based attenuation correction (CTAC), CT-based iterative attenuation compensation during reconstruction (CTIACR), and the CTMAC. From the correction results, we find out that the errors of the previous six configurations are mostly quite similar. The CTMAC needs the shortest correction time while obtaining good AC results. PMID:23840278

  3. Attenuation-difference radar tomography: results of a multiple-plane experiment at the U.S. Geological Survey Fractured-Rock Research Site, Mirror Lake, New Hampshire

    USGS Publications Warehouse

    Lane, J.W.; Day-Lewis, F. D.; Harris, J.M.; Haeni, F.P.; Gorelick, S.M.

    2000-01-01

    Attenuation-difference, borehole-radar tomography was used to monitor a series of sodium chloride tracer injection tests conducted within the FSE, wellfield at the U.S. Geological Survey Fractured-Rock Hydrology Research Site in Grafton County, New Hampshire, USA. Borehole-radar tomography surveys were conducted using the sequential-scanning and injection method in three boreholes that form a triangular prism of adjoining tomographic image planes. Results indicate that time-lapse tomography methods provide high-resolution images of tracer distribution in permeable zones.

  4. Tumor-Specific Targeting With Modified Sindbis Viral Vectors: Evaluation with Optical Imaging and Positron Emission Tomography In Vivo

    PubMed Central

    Stelter, Lars; Tseng, Jen-Chieh; Torosjan, Armen; Levin, Brandi; Longo, Valerie A.; Pillarsetty, Nagavarakishore; Zanzonico, Pat; Meruelo, Daniel; Daniel, Steven M.

    2015-01-01

    Purpose Sindbis virus (SINV) infect tumor cells specifically and systemically throughout the body. Sindbis vectors are capable of expressing high levels of transduced suicide genes and thus efficiently produce enzymes for prodrug conversion in infected tumor cells. The ability to monitor suicide gene expression levels and viral load in patients, after administration of the vectors, would significantly enhance this tumor-specific therapeutic option. Procedures The tumor specificity of SINV is mediated by the 67-kDa laminin receptor (LR). We probed different cancer cell lines for their LR expression and, to determine the specific role of LR-expression in the infection cycle, used different molecular imaging strategies, such as bioluminescence, fluorescence molecular tomography, and positron emission tomography, to evaluate SINV-mediated infection in vitro and in vivo. Results All cancer cell lines showed a marked expression of LR. The infection rates of the SINV particles, however, differed significantly among the cell lines. Conclusion We used novel molecular imaging techniques to visualize vector delivery to different neoplatic cells. SINV infection rates proofed to be not solely dependent on cellular LR expression. Further studies need to evaluate the herein discussed ways of cellular infection and viral replication. PMID:22847302

  5. Attenuation Tomography of Northern California and the Yellow Sea / Korean Peninsula from Coda-source Normalized and Direct Lg Amplitudes

    SciTech Connect

    Ford, S R; Dreger, D S; Phillips, W S; Walter, W R; Mayeda, K; Malagnini, L

    2008-07-16

    Inversions for regional attenuation (1/Q) of Lg are performed in two different regions. The path attenuation component of the Lg spectrum is isolated using the coda-source normalization method, which corrects the Lg spectral amplitude for the source using the stable, coda-derived source spectra. Tomographic images of Northern California agree well with one-dimensional (1-D) Lg Q estimated from five different methods. We note there is some tendency for tomographic smoothing to increase Q relative to targeted 1-D methods. For example in the San Francisco Bay Area, which contains high attenuation relative to the rest of it's region, Q is over-estimated by {approx}30. Coda-source normalized attenuation tomography is also carried out for the Yellow Sea/Korean Peninsula (YSKP) where output parameters (site, source, and path terms) are compared with those from the amplitude tomography method of Phillips et al. (2005) as well as a new method that ties the source term to the MDAC formulation (Walter and Taylor, 2001). The source terms show similar scatter between coda-source corrected and MDAC source perturbation methods, whereas the amplitude method has the greatest correlation with estimated true source magnitude. The coda-source better represents the source spectra compared to the estimated magnitude and could be the cause of the scatter. The similarity in the source terms between the coda-source and MDAC-linked methods shows that the latter method may approximate the effect of the former, and therefore could be useful in regions without coda-derived sources. The site terms from the MDAC-linked method correlate slightly with global Vs30 measurements. While the coda-source and amplitude ratio methods do not correlate with Vs30 measurements, they do correlate with one another, which provides confidence that the two methods are consistent. The path Q{sup -1} values are very similar between the coda-source and amplitude ratio methods except for small differences in the Da

  6. Improving attenuation tomography by novel inversions for t* and Q: application to Parkfield, California and Okmok volcano, Alaska

    NASA Astrophysics Data System (ADS)

    Pesicek, J. D.; Bennington, N. L.; Thurber, C. H.; Zhang, H.

    2011-12-01

    Standard methods for mapping variations in seismic attenuation (Q) structure using local earthquake data involve a two-step process. First, values of the whole path attenuation operator t* are determined from earthquake data recorded on a seismic array by inverting observed spectra for source and attenuation parameters. Then, these t* data are used to invert tomographically for frequency-independent Q models. The observed earthquake amplitude spectra depend on both source parameters and site effects. However, quantification of site effects is often neglected. Bennington et al. [2008] determined site response jointly with source parameters for small groups of events and then computed each station's site response as the average over all groups. Building on this work, we have adapted the method to model all events simultaneously to more accurately determine site response from the earthquake spectra. This in turn allows us to more accurately determine t*. However, resolution analysis of the results shows that some parameters are not well resolved in the joint inversion. Thus, an alternating inversion scheme is tested and adapted to alleviate poor resolution and parameter trade-offs. The new scheme produces better fits to the earthquake spectra than previous methods, and the resulting t* data should allow for more accurate determination of the Q structure. Because the equation relating t* to Q is nonlinear, the typical approach to determining Q is to solve for changes to a starting model iteratively, similar to methods commonly used in travel time tomography. However, if we instead solve for the inverse of Q, the equation becomes linear and the solution no longer depends on the starting model. This simple modification may allow us to more accurately determine Q. We test these new t* and Q methods using earthquake data from Parkfield, California and Okmok volcano, Alaska. We present the results for real and synthetic data and compare and contrast these results to more

  7. Room Temperature Stabilization of Oral, Live Attenuated Salmonella enterica serovar Typhi-Vectored Vaccines

    PubMed Central

    Ohtake, Satoshi; Martin, Russell; Saxena, Atul; Pham, Binh; Chiueh, Gary; Osorio, Manuel; Kopecko, Dennis; Xu, DeQi; Lechuga-Ballesteros, David; Truong-Le, Vu

    2011-01-01

    Foam drying, a modified freeze drying process, was utilized to produce a heat-stable, live attenuated Salmonella Typhi ‘Ty21a’ bacterial vaccine. Ty21a vaccine was formulated with pharmaceutically approved stabilizers, including sugars, plasticizers, amino acids, and proteins. Growth media and harvesting conditions of the bacteria were also studied to enhance resistance to desiccation stress encountered during processing as well as subsequent storage at elevated temperatures. The optimized Ty21a vaccine, formulated with trehalose, methionine, and gelatin, demonstrated stability for approximately 12 weeks at 37°C (i.e., time required for the vaccine to decrease in potency by 1log10 CFU) and no loss in titer at 4 and 25°C following storage for the same duration. Furthermore, the foam dried Ty21a elicited a similar immunogenic response in mice as well as protection in challenge studies compared to Vivotif™, the commercial Ty21a vaccine. The enhanced heat stability of the Ty21a oral vaccine, or Ty21a derivatives expressing foreign antigens (e.g. anthrax), could mitigate risks of vaccine potency loss during long term storage, shipping, delivery to geographical areas with warmer climates or during emergency distribution following a bioterrorist attack. Because the foam drying process is conducted using conventional freeze dryers and can be readily implemented at any freeze drying manufacturing facility, this technology appears ready and appropriate for large scale processing of foam dried vaccines. PMID:21300096

  8. Numerical solution of 2D-vector tomography problem using the method of approximate inverse

    NASA Astrophysics Data System (ADS)

    Svetov, Ivan; Maltseva, Svetlana; Polyakova, Anna

    2016-08-01

    We propose a numerical solution of reconstruction problem of a two-dimensional vector field in a unit disk from the known values of the longitudinal and transverse ray transforms. The algorithm is based on the method of approximate inverse. Numerical simulations confirm that the proposed method yields good results of reconstruction of vector fields.

  9. Application of optical coherence tomography attenuation imaging for quantification of optical properties in medulloblastoma

    NASA Astrophysics Data System (ADS)

    Vuong, Barry; Skowron, Patryk; Kiehl, Tim-Rasmus; Kyan, Matthew; Garzia, Livia; Genis, Helen; Sun, Cuiru; Taylor, Michael D.; Yang, Victor X. D.

    2015-03-01

    The hemodynamic environment is known to play a crucial role in the progression, rupture, and treatment of intracranial aneurysms. Currently there is difficulty assessing and measuring blood flow profiles in vivo. An emerging high resolution imaging modality known as split spectrum Doppler optical coherence tomography (ssDOCT) has demonstrated the capability to quantify hemodynamic patterns as well as arterial microstructural changes. In this study, we present a novel in vitro method to acquire precise blood flow patterns within a patient- specific aneurysm silicone flow models using ssDOCT imaging. Computational fluid dynamics (CFD) models were generated to verify ssDOCT results.

  10. Myocardial signal density levels and beam-hardening artifact attenuation using dual-energy computed tomography.

    PubMed

    Rodriguez-Granillo, Gaston A; Carrascosa, Patricia; Cipriano, Silvina; de Zan, Macarena; Deviggiano, Alejandro; Capunay, Carlos; Cury, Ricardo C

    2015-01-01

    The assessment of myocardial perfusion using single-energy (SE) imaging is influenced by beam-hardening artifacts (BHA). We sought to explore the ability of dual-energy (DE) imaging to attenuate the presence of BHA. Myocardial signal density (SD) was evaluated in 2240 myocardial segments (112 for each energy level) and in 320 American Heart Association segments among the SE group. Compared to DE reconstructions at the best energy level, SE acquisitions showed no significant differences overall regarding myocardial SD or signal-to-noise ratio. The segments most commonly affected by BHA showed significantly lower myocardial SD at the lowest energy levels, progressively normalizing at higher energy levels.

  11. Attenuation-difference radar tomography: results of a multiplane experiment at the U.S. Geological Survey Fractured-Rock Research Site, Mirror Lake, New Hampshire

    NASA Astrophysics Data System (ADS)

    Lane, John W., Jr.; Day-Lewis, F. D.; Harris, J. M.; Haeni, F. P.; Gorelick, S. M.

    2000-04-01

    Attenuation-difference, borehole-radar tomography was used to monitor a series of sodium chloride tracer injection tests conducted within the FSE wellfield at the U.S. Geological Survey Fractured-Rock Hydrology Research Site in Grafton County, New Hampshire, USA. Borehole-radar tomography surveys were conducted by using the sequential-scanning and injection method in three boreholes that form a triangular prism of adjoining tomographic image planes. Attenuation-difference data were inverted by using a weighted damped least-squares (WDLS) inversion method and several different solution simplicity schemes to suppress tomogram artifacts induced by the acquisition geometry, the location and magnitude of the anomaly, and noisy data. Qualitatively, flat tomograms generated by minimizing the norm of the first spatial derivative were most effective at suppressing artifacts. Although artifact suppression measures can be somewhat effective, negative consequences or artifact suppression include (1) reduction in the magnitude of the attenuation differences in the vicinity of the target anomaly and (2) blurring of the anomalies. These effects distort estimates of the location and magnitude of attenuation anomalies. In order to estimate robustly the location and magnitude of attenuation differences, areal constraints were imposed on the WDLS inversions to confine changes in attenuation to regions that are intersected by rays with large attenuation differences and bounded by rays with insignificant attenuation differences. Results from forward modeling support the application of these constraints. The resolution matrix was used to model the effects of acquisition geometry, target anomaly shape, location, and magnitude. For this study, the method of forward modeling indicates that estimates of pixel attenuation are improved by applying areal constraints to the WDLS inversions.

  12. Targeted therapy via oral administration of attenuated Salmonella expression plasmid-vectored Stat3-shRNA cures orthotopically transplanted mouse HCC.

    PubMed

    Tian, Y; Guo, B; Jia, H; Ji, K; Sun, Y; Li, Y; Zhao, T; Gao, L; Meng, Y; Kalvakolanu, D V; Kopecko, D J; Zhao, X; Zhang, L; Xu, D

    2012-06-01

    The development of RNA interference-based cancer gene therapies has been delayed due to the lack of effective tumor-targeting delivery systems. Attenuated Salmonella enterica serovar Typhimurium (S. Typhimurium) has a natural tropism for solid tumors. We report here the use of attenuated S. Typhimurium as a vector to deliver shRNA directly into tumor cells. Constitutively activated signal transducer and activator of transcription 3 (Stat3) is a key transcription factor involved in both hepatocellular carcinoma (HCC) growth and metastasis. In this study, attenuated S. Typhimurium was capable of delivering shRNA-expressing vectors to the targeted cancer cells and inducing RNA interference in vivo. More importantly, a single oral dose of attenuated S. Typhimurium carrying shRNA-expressing vectors targeting Stat3 induced remarkably delayed and reduced HCC (in 70% of mice). Cancer in these cured mice did not recur over 2 years following treatment. These data demonstrated that RNA interference combined with Salmonella as a delivery system may offer a novel clinical approach for cancer gene therapy. PMID:22555509

  13. Geostatistics and the representative elementary volume of gamma ray tomography attenuation in rocks cores

    USGS Publications Warehouse

    Vogel, J.R.; Brown, G.O.

    2003-01-01

    Semivariograms of samples of Culebra Dolomite have been determined at two different resolutions for gamma ray computed tomography images. By fitting models to semivariograms, small-scale and large-scale correlation lengths are determined for four samples. Different semivariogram parameters were found for adjacent cores at both resolutions. Relative elementary volume (REV) concepts are related to the stationarity of the sample. A scale disparity factor is defined and is used to determine sample size required for ergodic stationarity with a specified correlation length. This allows for comparison of geostatistical measures and representative elementary volumes. The modifiable areal unit problem is also addressed and used to determine resolution effects on correlation lengths. By changing resolution, a range of correlation lengths can be determined for the same sample. Comparison of voxel volume to the best-fit model correlation length of a single sample at different resolutions reveals a linear scaling effect. Using this relationship, the range of the point value semivariogram is determined. This is the range approached as the voxel size goes to zero. Finally, these results are compared to the regularization theory of point variables for borehole cores and are found to be a better fit for predicting the volume-averaged range.

  14. Tomography of atomic number and density of materials using dual-energy imaging and the Alvarez and Macovski attenuation model

    NASA Astrophysics Data System (ADS)

    Paziresh, M.; Kingston, A. M.; Latham, S. J.; Fullagar, W. K.; Myers, G. M.

    2016-06-01

    Dual-energy computed tomography and the Alvarez and Macovski [Phys. Med. Biol. 21, 733 (1976)] transmitted intensity (AMTI) model were used in this study to estimate the maps of density (ρ) and atomic number (Z) of mineralogical samples. In this method, the attenuation coefficients are represented [Alvarez and Macovski, Phys. Med. Biol. 21, 733 (1976)] in the form of the two most important interactions of X-rays with atoms that is, photoelectric absorption (PE) and Compton scattering (CS). This enables material discrimination as PE and CS are, respectively, dependent on the atomic number (Z) and density (ρ) of materials [Alvarez and Macovski, Phys. Med. Biol. 21, 733 (1976)]. Dual-energy imaging is able to identify sample materials even if the materials have similar attenuation coefficients at single-energy spectrum. We use the full model rather than applying one of several applied simplified forms [Alvarez and Macovski, Phys. Med. Biol. 21, 733 (1976); Siddiqui et al., SPE Annual Technical Conference and Exhibition (Society of Petroleum Engineers, 2004); Derzhi, U.S. patent application 13/527,660 (2012); Heismann et al., J. Appl. Phys. 94, 2073-2079 (2003); Park and Kim, J. Korean Phys. Soc. 59, 2709 (2011); Abudurexiti et al., Radiol. Phys. Technol. 3, 127-135 (2010); and Kaewkhao et al., J. Quant. Spectrosc. Radiat. Transfer 109, 1260-1265 (2008)]. This paper describes the tomographic reconstruction of ρ and Z maps of mineralogical samples using the AMTI model. The full model requires precise knowledge of the X-ray energy spectra and calibration of PE and CS constants and exponents of atomic number and energy that were estimated based on fits to simulations and calibration measurements. The estimated ρ and Z images of the samples used in this paper yield average relative errors of 2.62% and 1.19% and maximum relative errors of 2.64% and 7.85%, respectively. Furthermore, we demonstrate that the method accounts for the beam hardening effect in density (ρ) and

  15. Noninvasive assessment of macrovesicular liver steatosis in cadaveric donors based on computed tomography liver-to-spleen attenuation ratio.

    PubMed

    Rogier, Julien; Roullet, Stéphanie; Cornélis, François; Biais, Matthieu; Quinart, Alice; Revel, Philippe; Bioulac-Sage, Paulette; Le Bail, Brigitte

    2015-05-01

    Fatty liver disease, including liver steatosis, is a major health problem worldwide. In liver transplantation, macrovesicular steatosis in donor livers is a major cause of graft failure and remains difficult to assess. On one hand, several imaging modalities can be used for the assessment of liver fat, but liver biopsy, which is still considered the gold standard, may be difficult to perform in this context. On the other hand, computed tomography (CT) is commonly used by teams managing cadaveric donors to assess donors and to minimize the risk of complications in recipients. The purpose of our study was to validate the use of CT as a semiquantitative method for assessing macrovesicular steatosis in cadaveric donors with liver biopsy as a reference standard. A total of 109 consecutive cadaveric donors were included between October 2009 and May 2011. Brain death was diagnosed according to French legislation. Liver biopsy and then CT were performed on the same day to determine the degree of macrovesicular steatosis. All liver biopsies and CT scans were analyzed in a double-blinded fashion by a senior pathologist and a senior radiologist, respectively. For CT, we used the liver-to-spleen (L/S) attenuation ratio, which is a validated method for determining 30% or greater steatosis in living liver donors. Fourteen of 109 biopsies exhibited macrovesicular steatosis > 30% upon histologic analysis. A receiver operating characteristic curve was generated for the L/S ratio to identify its ability to predict significant steatosis, which was defined as >30%. A cutoff value of 0.9 for the CT L/S ratio provided a sensitivity of 79% and a specificity of 97% to detect significant steatosis. PMID:25761371

  16. Noninvasive assessment of macrovesicular liver steatosis in cadaveric donors based on computed tomography liver-to-spleen attenuation ratio.

    PubMed

    Rogier, Julien; Roullet, Stéphanie; Cornélis, François; Biais, Matthieu; Quinart, Alice; Revel, Philippe; Bioulac-Sage, Paulette; Le Bail, Brigitte

    2015-05-01

    Fatty liver disease, including liver steatosis, is a major health problem worldwide. In liver transplantation, macrovesicular steatosis in donor livers is a major cause of graft failure and remains difficult to assess. On one hand, several imaging modalities can be used for the assessment of liver fat, but liver biopsy, which is still considered the gold standard, may be difficult to perform in this context. On the other hand, computed tomography (CT) is commonly used by teams managing cadaveric donors to assess donors and to minimize the risk of complications in recipients. The purpose of our study was to validate the use of CT as a semiquantitative method for assessing macrovesicular steatosis in cadaveric donors with liver biopsy as a reference standard. A total of 109 consecutive cadaveric donors were included between October 2009 and May 2011. Brain death was diagnosed according to French legislation. Liver biopsy and then CT were performed on the same day to determine the degree of macrovesicular steatosis. All liver biopsies and CT scans were analyzed in a double-blinded fashion by a senior pathologist and a senior radiologist, respectively. For CT, we used the liver-to-spleen (L/S) attenuation ratio, which is a validated method for determining 30% or greater steatosis in living liver donors. Fourteen of 109 biopsies exhibited macrovesicular steatosis > 30% upon histologic analysis. A receiver operating characteristic curve was generated for the L/S ratio to identify its ability to predict significant steatosis, which was defined as >30%. A cutoff value of 0.9 for the CT L/S ratio provided a sensitivity of 79% and a specificity of 97% to detect significant steatosis.

  17. Full Wave Analysis of RF Signal Attenuation in a Lossy Rough Surface Cave using a High Order Time Domain Vector Finite Element Method

    SciTech Connect

    Pingenot, J; Rieben, R; White, D; Dudley, D

    2005-10-31

    We present a computational study of signal propagation and attenuation of a 200 MHz planar loop antenna in a cave environment. The cave is modeled as a straight and lossy random rough wall. To simulate a broad frequency band, the full wave Maxwell equations are solved directly in the time domain via a high order vector finite element discretization using the massively parallel CEM code EMSolve. The numerical technique is first verified against theoretical results for a planar loop antenna in a smooth lossy cave. The simulation is then performed for a series of random rough surface meshes in order to generate statistical data for the propagation and attenuation properties of the antenna in a cave environment. Results for the mean and variance of the power spectral density of the electric field are presented and discussed.

  18. Design of a digital beam attenuation system for computed tomography. Part II. Performance study and initial results

    SciTech Connect

    Szczykutowicz, Timothy P.; Mistretta, Charles A.

    2013-02-15

    a SPR reduction of Almost-Equal-To 4 times relative to flat field CT. The dynamic range for the DBA prototype was 3.7 compared to 84.2 for the flat field scan. Conclusions: Based on the results presented in this paper and the companion paper [T. Szczykutowicz and C. Mistretta, 'Design of a digital beam attenuation system for computed tomography. Part I. System design and simulation framework,' Med. Phys. 40, 021905 (2013)], FFMCT implemented via the DBA device seems feasible and should result in both a dose reduction and an improvement in image quality as judged by noise uniformity and scatter reduction. In addition, the dynamic range reduction achievable using the DBA may allow photon counting imaging to become a clinical reality. This study may allow for yet another step to be taken in the field of patient specific dose modulation.

  19. Investigation of the effects of attenuation correction on the compatibility of two single photon emission computed tomography systems with the use of segmentation through registration

    NASA Astrophysics Data System (ADS)

    Lampaskis, M.; Killilea, K.; Metherall, P.; Harris, A.; Barber, D.

    2011-09-01

    The aim of this work was to compare images acquired from two Single Photon Emission Computed Tomography (SPECT), performing attenuation correction using different systems, to evaluate the level at which images from these systems can be used on patients to assess myocardial perfusion. The two systems are the Siemens E-cam with profile attenuation correction and the General Electric Hawkeye system. This study was performed using an anthropomorphic torso phantom. The motivation was to examine if attenuation corrected images from these systems are comparable when assessing the myocardial function of patients, with different conditions regarding background (adjacent tissues) activity and the presence or not of defects on the cardiac wall. To perform the analysis of the acquired images specialized software were used to extract information relating to the activity distribution within the cardiac insert (simulated myocardium). This was based on standardized myocardial segmentation used clinically, by the application of image registration using an artificial reference model. The results show that adjacent tissue activity did not affect the ability to detect defects. Further, the application of attenuation correction may reduce the comparability of the two systems to a small degree.

  20. Development of an acid-resistant Salmonella Typhi Ty21a attenuated vector for improved oral vaccine delivery

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The licensed oral, live-attenuated bacterial vaccine for typhoid fever, Salmonella Typhi strain Ty21a, has also been utilized as a vaccine delivery platform for expression of diverse foreign antigens that stimulate protection against shigellosis, anthrax, plague, or human papilloma virus. However, T...

  1. Metal Artifact Reduction and Segmentation of Dental Computerized Tomography Images Using Least Square Support Vector Machine and Mean Shift Algorithm

    PubMed Central

    Mortaheb, Parinaz; Rezaeian, Mehdi

    2016-01-01

    Segmentation and three-dimensional (3D) visualization of teeth in dental computerized tomography (CT) images are of dentists’ requirements for both abnormalities diagnosis and the treatments such as dental implant and orthodontic planning. On the other hand, dental CT image segmentation is a difficult process because of the specific characteristics of the tooth's structure. This paper presents a method for automatic segmentation of dental CT images. We present a multi-step method, which starts with a preprocessing phase to reduce the metal artifact using the least square support vector machine. Integral intensity profile is then applied to detect each tooth's region candidates. Finally, the mean shift algorithm is used to partition the region of each tooth, and all these segmented slices are then applied for 3D visualization of teeth. Examining the performance of our proposed approach, a set of reliable assessment metrics is utilized. We applied the segmentation method on 14 cone-beam CT datasets. Functionality analysis of the proposed method demonstrated precise segmentation results on different sample slices. Accuracy analysis of the proposed method indicates that we can increase the sensitivity, specificity, precision, and accuracy of the segmentation results by 83.24%, 98.35%, 72.77%, and 97.62% and decrease the error rate by 2.34%. The experimental results show that the proposed approach performs well on different types of CT images and has better performance than all existing approaches. Moreover, segmentation results can be more accurate by using the proposed algorithm of metal artifact reduction in the preprocessing phase. PMID:27014607

  2. A pilot study comparing the development of EIAV Env-specific antibodies induced by DNA/recombinant vaccinia-vectored vaccines and an attenuated Chinese EIAV vaccine.

    PubMed

    Meng, Qinglai; Lin, Yuezhi; Ma, Jian; Ma, Yan; Zhao, Liping; Li, Shenwei; Yang, Kai; Zhou, Jianhua; Shen, Rongxian; Zhang, Xiaoyan; Shao, Yiming

    2012-12-01

    Data from successful attenuated lentiviral vaccine studies indicate that fully mature Env-specific antibodies characterized by high titer, high avidity, and the predominant recognition of conformational epitopes are associated with protective efficacy. Although vaccination with a DNA prime/recombinant vaccinia-vectored vaccine boost strategy has been found to be effective in some trials with non-human primate/simian/human immunodeficiency virus (SHIV) models, it remains unclear whether this vaccination strategy could elicit mature equine infectious anemia virus (EIAV) Env-specific antibodies, thus protecting vaccinated horses against EIAV infection. Therefore, in this pilot study we vaccinated horses using a strategy based on DNA prime/recombinant Tiantan vaccinia (rTTV)-vectored vaccines encoding EIAV env and gag genes, and observed the development of Env-specific antibodies, neutralizing antibodies, and p26-specific antibodies. Vaccination with DNA induced low titer, low avidity, and the predominant recognition of linear epitopes by Env-specific antibodies, which was enhanced by boosting vaccinations with rTTV vaccines. However, the maturation levels of Env-specific antibodies induced by the DNA/rTTV vaccines were significantly lower than those induced by the attenuated vaccine EIAV(FDDV). Additionally, DNA/rTTV vaccines did not elicit broadly neutralizing antibodies. After challenge with a virulent EIAV strain, all of the vaccinees and control horses died from EIAV disease. These data indicate that the regimen of DNA prime/rTTV vaccine boost did not induce mature Env-specific antibodies, which might have contributed to immune protection failure. PMID:23171359

  3. Time-lapse imaging of saline-tracer transport in fractured rock using difference-attenuation radar tomography

    USGS Publications Warehouse

    Day-Lewis, F. D.; Lane, J.W.; Harris, J.M.; Gorelick, S.M.

    2003-01-01

    Accurate characterization of fractured-rock aquifer heterogeneity remains one of the most challenging and important problems in groundwater hydrology. We demonstrate a promising strategy to identify preferential flow paths in fractured rock using a combination of geophysical monitoring and conventional hydrogeologic tests. Cross-well difference-attenuation ground-penetrating radar was used to monitor saline-tracer migration in an experiment at the U.S. Geological Survey Fractured Rock Hydrology Research Site in Grafton County, New Hampshire. Radar data sets were collected every 10 min in three adjoining planes for 5 hours during each of 12 tracer tests. An innovative inversion method accounts for data acquisition times and temporal changes in attenuation during data collection. The inverse algorithm minimizes a combination of two functions. The first is the sum of weighted squared data residuals. Second is a measure of solution complexity based on an a priori space-time covariance function, subject to constraints that limit radar-attenuation changes to regions of the tomograms traversed by high difference-attenuation ray paths. The time series of tomograms indicate relative tracer concentrations and tracer arrival times in the image planes; from these we infer the presence and location of a preferential flow path within a previously identified zone of transmissive fractures. These results provide new insights into solute channeling and the nature of aquifer heterogeneity at the site.

  4. Attenuation of mirror image and enhancement of the signal-to-noise ratio in a Talbot bands optical coherence tomography system.

    PubMed

    Bradu, Adrian; Podoleanu, Adrian Gh

    2011-07-01

    A Fourier domain optical coherence tomography setup is presented built around an optical configuration that exhibits Talbot bands. A low astigmatism spectrometer is used, employing a spherical mirror and a cylindrical lens between a diffraction grating and a linear CCD camera. To produce Talbot bands, the two interferometer beams--object and reference--are laterally shifted in respect to each other in their way toward the diffraction grating. This allows attenuation of mirror terms and optimization of the sensitivity profile. We evaluate the optimization of the sensitivity profile with depth, in respect to its overall strength and its position peak, which can be shifted toward a larger optical path difference in the interferometer. We demonstrate the efficiency of such a configuration at large depths by imaging a thick phantom and human skin in vivo for different values of the lateral distance between the two beams. PMID:21806271

  5. High-contrast X-ray micro-tomography of low attenuation samples using large area hybrid semiconductor pixel detector array of 10 × 5 Timepix chips

    NASA Astrophysics Data System (ADS)

    Karch, J.; Krejci, F.; Bartl, B.; Dudak, J.; Kuba, J.; Kvacek, J.; Zemlicka, J.

    2016-01-01

    State-of-the-art hybrid pixel semiconductor detectors provide excellent imaging properties such as unlimited dynamic range, high spatial resolution, high frame rate and energy sensitivity. Nevertheless, a limitation in the use of these devices for imaging has been the small sensitive area of a few square centimetres. In the field of microtomography we make use of a large area pixel detector assembled from 50 Timepix edgeless chips providing fully sensitive area of 14.3 × 7.15 cm2. We have successfully demonstrated that the enlargement of the sensitive area enables high-quality tomographic measurements of whole objects with high geometrical magnification without any significant degradation in resulting reconstructions related to the chip tilling and edgeless sensor technology properties. The technique of micro-tomography with the newly developed large area detector is applied for samples formed by low attenuation, low contrast materials such a seed from Phacelia tanacetifolia, a charcoalified wood sample and a beeswax seal sample.

  6. Replication-attenuated Human Adenoviral Type 4 vectors elicit capsid dependent enhanced innate immune responses that are partially dependent upon interactions with the complement system

    PubMed Central

    Hartman, Zachary C.; Appledorn, Daniel M.; Serra, Delila; Glass, Oliver; Mendelson, Todd; Clay, Timothy M.; Amalfitano, Andrea

    2009-01-01

    Human Adenovirus Type 4 (HAdV-4) is responsible for epidemic outbreaks of Acute Respiratory Disease (especially in military recruits), and is known to cause significant morbidity with several reported cases of mortality. However, we do not understand why this serotype causes such high morbidity, and have little insight into the immunobiology of HAdV-4 infections. We have now developed a replication attenuated HAdV-4 vector system, and through it, demonstrate that HAdV-4 virions have enhanced infectivity of certain cell types and reveal aspects of the serotype-specific heightened innate immunogenicity of infectious HAdV-4 capsids both in vitro and in vivo. We further found that elements of this serotype-specific immunogenicity were dependent upon interactions with the complement system. These findings provide insights into the mechanisms possibly underlying the known morbidity accompanying wild-type HAdV-4 infections as well as highlight important considerations when considering development of alternative serotype vectors. PMID:18280530

  7. Attenuation of vesicular stomatitis virus infection of brain using antiviral drugs and an adeno-associated virus-interferon vector

    PubMed Central

    Wollmann, Guido; Paglino, Justin C.; Maloney, Patrick R; Ahmadi, Sebastian A; van den Pol, Anthony N

    2015-01-01

    Vesicular stomatitis virus (VSV) shows promise as vaccine-vector and oncolytic virus. However, reports of neurotoxicity of VSV remain a concern. We compared 12 antiviral compounds to control infection of VSV-CT9-M51 and VSV-rp30 using murine and human brain cultures, and in vivo mouse models. Inhibition of replication, cytotoxicity and infectivity was strongest with ribavirin and IFN-α and to some extent with mycophenolic acid, chloroquine, and adenine 9-β-D-arabinofuranoside. To generate continuous IFN exposure, we made an adeno-associated virus vector expressing murine IFN; AAV-mIFN-β protected mouse brain cells from VSV, as did a combination of ribavirin and chloroquine. Intracranial AAV-mIFN-β protected the brain against VSV-CT9-M51. In SCID mice bearing human glioblastoma, AAV-mIFN-β moderately enhanced survival. VSV-CT9-M51 doubled median survival when administered after AAV-mIFN-β; some surviving mice showed complete tumor destruction. Together, these data suggest that AAV-IFN or IFN with ribavirin and chloroquine provide an optimal anti-virus combination against VSV in the brain. PMID:25462341

  8. Evaluation of the Efficacy, Potential for Vector Transmission, and Duration of Immunity of MP-12, an Attenuated Rift Valley Fever Virus Vaccine Candidate, in Sheep

    PubMed Central

    Bennett, Kristine E.; Drolet, Barbara S.; Lindsay, Robbin; Mecham, James O.; Reeves, Will K.; Weingartl, Hana M.; Wilson, William C.

    2015-01-01

    Rift Valley fever virus (RVFV) causes serious disease in ruminants and humans in Africa. In North America, there are susceptible ruminant hosts and competent mosquito vectors, yet there are no fully licensed animal vaccines for this arthropod-borne virus, should it be introduced. Studies in sheep and cattle have found the attenuated strain of RVFV, MP-12, to be both safe and efficacious based on early testing, and a 2-year conditional license for use in U.S. livestock has been issued. The purpose of this study was to further determine the vaccine's potential to infect mosquitoes, the duration of humoral immunity to 24 months postvaccination, and the ability to prevent disease and viremia from a virulent challenge. Vaccination experiments conducted in sheep found no evidence of a potential for vector transmission to 4 North American mosquito species. Neutralizing antibodies were elicited, with titers of >1:40 still present at 24 months postvaccination. Vaccinates were protected from clinical signs and detectable viremia after challenge with virulent virus, while control sheep had fever and high-titered viremia extending for 5 days. Antibodies to three viral proteins (nucleocapsid N, the N-terminal half of glycoprotein GN, and the nonstructural protein from the short segment NSs) were also detected to 24 months using competitive enzyme-linked immunosorbent assays. This study demonstrates that the MP-12 vaccine given as a single dose in sheep generates protective immunity to a virulent challenge with antibody duration of at least 2 years, with no evidence of a risk for vector transmission. PMID:26041042

  9. Development of an Acid-Resistant Salmonella Typhi Ty21a Attenuated Vector For Improved Oral Vaccine Delivery

    PubMed Central

    Feuille, Catherine M.; Starke, Carly Elizabeth C.; Bhagwat, Arvind A.; Stibitz, Scott; Kopecko, Dennis J.

    2016-01-01

    The licensed oral, live-attenuated bacterial vaccine for typhoid fever, Salmonella enterica serovar Typhi strain Ty21a, has also been utilized as a vaccine delivery platform for expression of diverse foreign antigens that stimulate protection against shigellosis, anthrax, plague, or human papilloma virus. However, Ty21a is acid-labile and, for effective oral immunization, stomach acidity has to be either neutralized with buffer or by-passed with Ty21a in an enteric-coated capsule (ECC). Several studies have shown that efficacy is reduced when Ty21a is administered in an ECC versus as a buffered liquid formulation, the former limiting exposure to GI tract lymphoid tissues. However, the ECC was selected as a more practical delivery format for both packaging/shipping and vaccine administration ease. We have sought to increase Ty21a acid-resistance to allow for removal from the ECC and immune enhancement. To improve Ty21a acid-resistance, glutamate-dependent acid resistance genes (GAD; responsible for Shigella spp. survival at very low pH) were cloned on a multi-copy plasmid (pGad) under a controllable arabinose-inducible promoter. pGad enhanced acid survival of Ty21a by 5 logs after 3 hours at pH 2.5, when cells were pre-grown in arabinose and under conditions that promote an acid-tolerance response (ATR). For genetically 100% stable expression, we inserted the gad genes into the Ty21a chromosome, using a method that allowed for subsequent removal of a selectable antibiotic resistance marker. Further, both bacterial growth curves and survival assays in cultured human monocytes/macrophages suggest that neither the genetic methods employed nor the resulting acid-resistance conferred by expression of the Gad proteins in Ty21a had any effect on the existing attenuation of this vaccine strain. PMID:27673328

  10. Ultrasound guided fluorescence molecular tomography with improved quantification by an attenuation compensated born-normalization and in vivo preclinical study of cancer

    NASA Astrophysics Data System (ADS)

    Li, Baoqiang; Berti, Romain; Abran, Maxime; Lesage, Frédéric

    2014-05-01

    Ultrasound imaging, having the advantages of low-cost and non-invasiveness over MRI and X-ray CT, was reported by several studies as an adequate complement to fluorescence molecular tomography with the perspective of improving localization and quantification of fluorescent molecular targets in vivo. Based on the previous work, an improved dual-modality Fluorescence-Ultrasound imaging system was developed and then validated in imaging study with preclinical tumor model. Ultrasound imaging and a profilometer were used to obtain the anatomical prior information and 3D surface, separately, to precisely extract the tissue boundary on both sides of sample in order to achieve improved fluorescence reconstruction. Furthermore, a pattern-based fluorescence reconstruction on the detection side was incorporated to enable dimensional reduction of the dataset while keeping the useful information for reconstruction. Due to its putative role in the current imaging geometry and the chosen reconstruction technique, we developed an attenuation compensated Born-normalization method to reduce the attenuation effects and cancel off experimental factors when collecting quantitative fluorescence datasets over large area. Results of both simulation and phantom study demonstrated that fluorescent targets could be recovered accurately and quantitatively using this reconstruction mechanism. Finally, in vivo experiment confirms that the imaging system associated with the proposed image reconstruction approach was able to extract both functional and anatomical information, thereby improving quantification and localization of molecular targets.

  11. Ultrasound guided fluorescence molecular tomography with improved quantification by an attenuation compensated born-normalization and in vivo preclinical study of cancer

    SciTech Connect

    Li, Baoqiang; Berti, Romain; Abran, Maxime; Lesage, Frédéric

    2014-05-15

    Ultrasound imaging, having the advantages of low-cost and non-invasiveness over MRI and X-ray CT, was reported by several studies as an adequate complement to fluorescence molecular tomography with the perspective of improving localization and quantification of fluorescent molecular targets in vivo. Based on the previous work, an improved dual-modality Fluorescence-Ultrasound imaging system was developed and then validated in imaging study with preclinical tumor model. Ultrasound imaging and a profilometer were used to obtain the anatomical prior information and 3D surface, separately, to precisely extract the tissue boundary on both sides of sample in order to achieve improved fluorescence reconstruction. Furthermore, a pattern-based fluorescence reconstruction on the detection side was incorporated to enable dimensional reduction of the dataset while keeping the useful information for reconstruction. Due to its putative role in the current imaging geometry and the chosen reconstruction technique, we developed an attenuation compensated Born-normalization method to reduce the attenuation effects and cancel off experimental factors when collecting quantitative fluorescence datasets over large area. Results of both simulation and phantom study demonstrated that fluorescent targets could be recovered accurately and quantitatively using this reconstruction mechanism. Finally, in vivo experiment confirms that the imaging system associated with the proposed image reconstruction approach was able to extract both functional and anatomical information, thereby improving quantification and localization of molecular targets.

  12. Ex vivo determination of glucose permeability and optical attenuation coefficient in normal and adenomatous human colon tissues using spectral domain optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Zhao, Qingliang; Zhou, Chuanqing; Wei, Huajiang; He, Yonghong; Chai, Xinyu; Ren, Qiushi

    2012-10-01

    Recent reports have suggested that spectral domain optical coherence tomography (SD-OCT) is a useful tool for quantifying the permeability of hyperosmotic agents in various tissues. We report our preliminary results on quantification of glucose diffusion and assessment of the optical attenuation change due to the diffusion of glucose in normal and adenomatous human colon tissues in vitro by using a SD-OCT and then calculated the permeability coefficients (PC) and optical attenuation coefficients (AC). The PC of a 30% aqueous solution of glucose was 3.37±0.23×10-6 cm/s in normal tissue and 5.65±0.16×10-6 cm/s in cancerous colon tissue. Optical AC in a normal colon ranged from 3.48±0.37 to 2.68±0.82 mm-1 and was significantly lower than those seen in the cancerous tissue (8.48±0.95 to 3.16±0.69 mm-1, p<0.05). The results suggest that quantitative measurements of using PC and AC from OCT images could be a potentially powerful method for colon cancer detection.

  13. Quantitative measurement on optical attenuation coefficient of cell lines 5-8F and 6-10B using optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Li, Jianghua; Shen, Zhiyuan; He, Yonghong; Tu, Ziwei; Xia, Yunfei; Chen, Changshui; Liu, Songhao

    2012-10-01

    Oncogenesis and metastasis of tumor are difficult to detect during the clinic therapy. To explore the optical properties of tumorigenesis and metastasis in nasopharyngeal carcinoma (NPC), we assessed the NPC cell lines 5-8F and 6-10B by optical coherence tomography (OCT): first, the OCT images of the two different types of cell pellets were captured. Second, by fitting Beer's law to the averaged A-scans in these OCT datasets, the attenuation coefficients (μt) of the cells were extracted. The median attenuation coefficients (interquartile range (IQR)) of 5-8F and 6-10B were 6.79 mm-1 (IQR 6.52 to 7.23 mm-1) versus 8.06 mm-1 (IQR 7.65 to 8.40 mm-1), respectively (p < 0.01, df = 39). Subsequently, the results were compared with those obtained by polarization sensitive OCT, which further confirmed that the quantitative OCT analysis (by μt) could differentiate the oncogenesis and metastasis NPC cell lines in real time non-invasively.

  14. NOPE: a new inversion method for the total attenuation profile retrieval in atmospheric tomography from space-borne experiments

    NASA Astrophysics Data System (ADS)

    Fussen, Didier

    1995-12-01

    The tomography of the Earth's atmosphere by the solar occultation method leads to a highly non-linear inverse problem if the full solar disc is used as the light source. Well known heuristic methods like Chahine's algorithm or onion peeling fail to solve the inversion. We present a new method referred to as NOPE (for natural orthogonal polynomial expansion) that addresses this class of inverse problems by focusing on the morphological content of the unknown profile and allowing also a fine tuning of the a priori information.

  15. Design of a digital beam attenuation system for computed tomography: Part I. System design and simulation framework

    SciTech Connect

    Szczykutowicz, Timothy P.; Mistretta, Charles A.

    2013-02-15

    Purpose: The purpose of this work is to introduce a new device that allows for patient-specific imaging-dose modulation in conventional and cone-beam CT. The device is called a digital beam attenuator (DBA). The DBA modulates an x-ray beam by varying the attenuation of a set of attenuating wedge filters across the fan angle. The ability to modulate the imaging dose across the fan beam represents another stride in the direction of personalized medicine. With the DBA, imaging dose can be tailored for a given patient anatomy, or even tailored to provide signal-to-noise ratio enhancement within a region of interest. This modulation enables decreases in: dose, scatter, detector dynamic range requirements, and noise nonuniformities. In addition to introducing the DBA, the simulation framework used to study the DBA under different configurations is presented. Finally, a detailed study on the choice of the material used to build the DBA is presented. Methods: To change the attenuator thickness, the authors propose to use an overlapping wedge design. In this design, for each wedge pair, one wedge is held stationary and another wedge is moved over the stationary wedge. The composite thickness of the two wedges changes as a function of the amount of overlap between the wedges. To validate the DBA concept and study design changes, a simulation environment was constructed. The environment allows for changes to system geometry, different source spectra, DBA wedge design modifications, and supports both voxelized and analytic phantom models. A study of all the elements from atomic number 1 to 92 were evaluated for use as DBA filter material. The amount of dynamic range and tube loading for each element were calculated for various DBA designs. Tube loading was calculated by comparing the attenuation of the DBA at its minimum attenuation position to a filtered non-DBA acquisition. Results: The design and parametrization of DBA implemented FFMCT has been introduced. A simulation

  16. Pseudolocal tomography

    DOEpatents

    Katsevich, A.J.; Ramm, A.G.

    1996-07-23

    Local tomographic data is used to determine the location and value of a discontinuity between a first internal density of an object and a second density of a region within the object. A beam of radiation is directed in a predetermined pattern through the region of the object containing the discontinuity. Relative attenuation data of the beam is determined within the predetermined pattern having a first data component that includes attenuation data through the region. The relative attenuation data is input to a pseudo-local tomography function, where the difference between the internal density and the pseudo-local tomography function is computed across the discontinuity. The pseudo-local tomography function outputs the location of the discontinuity and the difference in density between the first density and the second density. 7 figs.

  17. Pseudolocal tomography

    DOEpatents

    Katsevich, Alexander J.; Ramm, Alexander G.

    1996-01-01

    Local tomographic data is used to determine the location and value of a discontinuity between a first internal density of an object and a second density of a region within the object. A beam of radiation is directed in a predetermined pattern through the region of the object containing the discontinuity. Relative attenuation data of the beam is determined within the predetermined pattern having a first data component that includes attenuation data through the region. The relative attenuation data is input to a pseudo-local tomography function, where the difference between the internal density and the pseudo-local tomography function is computed across the discontinuity. The pseudo-local tomography function outputs the location of the discontinuity and the difference in density between the first density and the second density.

  18. Comparison of event-based analysis of glaucoma progression assessed subjectively on visual fields and retinal nerve fibre layer attenuation measured by optical coherence tomography.

    PubMed

    Kaushik, Sushmita; Mulkutkar, Samyak; Pandav, Surinder Singh; Verma, Neelam; Gupta, Amod

    2015-02-01

    The purpose is to study the ability of an event-based analysis of retinal nerve fibre layer (RNFL) attenuation measured by Stratus(®) optical coherence tomography (OCT) and to detect progression across the spectrum of glaucoma. Adult glaucoma suspects, ocular hypertensives and glaucoma patients who had undergone baseline RNFL thickness measurement on Stratus OCT and reliable automated visual field examination by Humphrey's visual field analyser prior to March 2007 and had 5-year follow-up data were recruited. Progression on OCT was defined by two criteria: decrease in average RNFL thickness from baseline by at least 10 and 20 µ. Visual field progression was defined by the modified Hodapp-Parrish-Anderson criteria. Absolute and percentage change in RNFL thickness from baseline was compared in progressors and non-progressors on visual fields. Concordance between structural and functional progression was analysed. 318 eyes of 162 patients were analysed. 35 eyes (11 %) progressed by visual fields, 8 (2.5 %) progressed using the 20 µ loss criterion, while 30 eyes (9.4 %) progressed using the 10 µ loss criterion. In glaucoma suspects, mean absolute RNFL attenuation was 8.6 µ (12.1 % of baseline) in those who progressed to glaucoma by visual fields. OCT was more useful to detect progression in early glaucoma, but performed poorly in advanced glaucoma. The 10 µ criterion appears to be closer to visual field progression. However, the ability to detect progression varies considerably between functional and structural tools depending upon the severity of the disease. PMID:25502985

  19. Changes in the linear attenuation coefficient of canine appendicular bone following intravenous infusion of strontium lactate, measured using gamma-ray computed tomography.

    PubMed

    Overton, T R; Snyder, R E; Hangartner, T N; Girgis, S; Audette, R J; Secord, D C

    1992-04-01

    Changes in the average linear attenuation coefficient (LAC) within a fixed measurement volume in the proximal end of the dog tibia, which contains trabecular bone and associated soft tissues (the trabecular bone "space"), were monitored continuously using gamma-ray computed tomography (gamma-CT) prior to, during, and following intravenous infusion of strontium (Sr) lactate. An infusion of 1.3-4.7 g of Sr over a period of 110-160 minutes into 20-kg dogs resulted, within 6-8 hours, in an increase of 0.019-0.045 cm-1 (P less than 0.002) in the LAC. Calibration of the gamma-CT system showed that 0.44 mg/cm3 of Sr produced a change of 0.01 cm-1 in the LAC. Using this conversion factor, the Sr concentration in the trabecular bone space resulting from infusion, as measured by flame atomic absorption spectroscopy, agreed with that predicted by the change observed in the LAC. Sr present in the serum and urine was consistent with the changes observed in the LAC over the study period. Control dogs infused with mineral-free solutions showed no change in LAC. Calcium equivalents required to give the changes observed in the LAC using Sr indicate that variations in skeletal turnover in man can be monitored in the peripheral skeleton using gamma-CT. PMID:1571847

  20. Attenuation-Corrected vs. Nonattenuation-Corrected 2-Deoxy-2-[F-18]fluoro-d-glucose-Positron Emission Tomography in Oncology, A Systematic Review

    PubMed Central

    Joshi, Urvi; Riphagen, Ingrid I.; Teule, Gerrit J. J.; van Lingen, Arthur; Hoekstra, Otto S.

    2007-01-01

    Purpose To perform a systematic review and meta-analysis to determine the diagnostic accuracy of attenuation-corrected (AC) vs. nonattenuation-corrected (NAC) 2-deoxy-2-[F-18]fluoro-d-glucose-positron emission tomography (FDG-PET) in oncological patients. Procedures Following a comprehensive search of the literature, two reviewers independently assessed the methodological quality of eligible studies. The diagnostic value of AC was studied through its sensitivity/specificity compared to histology, and by comparing the relative lesion detection rate reported with NAC-PET vs. AC, for full-ring and dual-head coincidence PET (FR- and DH-PET, respectively). Results Twelve studies were included. For FR-PET, the pooled sensitivity/specificity on a patient basis was 64/97% for AC and 62/99% for NAC, respectively. Pooled lesion detection with NAC vs. AC was 98% [95% confidence interval (95% CI): 96–99%, n = 1,012 lesions] for FR-PET, and 88% (95% CI:81–94%, n = 288 lesions) for DH-PET. Conclusions Findings suggest similar sensitivity/specificity and lesion detection for NAC vs. AC FR-PET and significantly higher lesion detection for NAC vs. AC DH-PET. PMID:17318671

  1. Magnetoacoustic tomography with magnetic induction for high-resolution bioimepedance imaging through vector source reconstruction under the static field of MRI magnet

    PubMed Central

    Mariappan, Leo; Hu, Gang; He, Bin

    2014-01-01

    Purpose: Magnetoacoustic tomography with magnetic induction (MAT-MI) is an imaging modality to reconstruct the electrical conductivity of biological tissue based on the acoustic measurements of Lorentz force induced tissue vibration. This study presents the feasibility of the authors' new MAT-MI system and vector source imaging algorithm to perform a complete reconstruction of the conductivity distribution of real biological tissues with ultrasound spatial resolution. Methods: In the present study, using ultrasound beamformation, imaging point spread functions are designed to reconstruct the induced vector source in the object which is used to estimate the object conductivity distribution. Both numerical studies and phantom experiments are performed to demonstrate the merits of the proposed method. Also, through the numerical simulations, the full width half maximum of the imaging point spread function is calculated to estimate of the spatial resolution. The tissue phantom experiments are performed with a MAT-MI imaging system in the static field of a 9.4 T magnetic resonance imaging magnet. Results: The image reconstruction through vector beamformation in the numerical and experimental studies gives a reliable estimate of the conductivity distribution in the object with a ∼1.5 mm spatial resolution corresponding to the imaging system frequency of 500 kHz ultrasound. In addition, the experiment results suggest that MAT-MI under high static magnetic field environment is able to reconstruct images of tissue-mimicking gel phantoms and real tissue samples with reliable conductivity contrast. Conclusions: The results demonstrate that MAT-MI is able to image the electrical conductivity properties of biological tissues with better than 2 mm spatial resolution at 500 kHz, and the imaging with MAT-MI under a high static magnetic field environment is able to provide improved imaging contrast for biological tissue conductivity reconstruction. PMID:24506649

  2. Magnetoacoustic tomography with magnetic induction for high-resolution bioimepedance imaging through vector source reconstruction under the static field of MRI magnet

    SciTech Connect

    Mariappan, Leo; Hu, Gang; He, Bin

    2014-02-15

    Purpose: Magnetoacoustic tomography with magnetic induction (MAT-MI) is an imaging modality to reconstruct the electrical conductivity of biological tissue based on the acoustic measurements of Lorentz force induced tissue vibration. This study presents the feasibility of the authors' new MAT-MI system and vector source imaging algorithm to perform a complete reconstruction of the conductivity distribution of real biological tissues with ultrasound spatial resolution. Methods: In the present study, using ultrasound beamformation, imaging point spread functions are designed to reconstruct the induced vector source in the object which is used to estimate the object conductivity distribution. Both numerical studies and phantom experiments are performed to demonstrate the merits of the proposed method. Also, through the numerical simulations, the full width half maximum of the imaging point spread function is calculated to estimate of the spatial resolution. The tissue phantom experiments are performed with a MAT-MI imaging system in the static field of a 9.4 T magnetic resonance imaging magnet. Results: The image reconstruction through vector beamformation in the numerical and experimental studies gives a reliable estimate of the conductivity distribution in the object with a ∼1.5 mm spatial resolution corresponding to the imaging system frequency of 500 kHz ultrasound. In addition, the experiment results suggest that MAT-MI under high static magnetic field environment is able to reconstruct images of tissue-mimicking gel phantoms and real tissue samples with reliable conductivity contrast. Conclusions: The results demonstrate that MAT-MI is able to image the electrical conductivity properties of biological tissues with better than 2 mm spatial resolution at 500 kHz, and the imaging with MAT-MI under a high static magnetic field environment is able to provide improved imaging contrast for biological tissue conductivity reconstruction.

  3. SU-E-I-86: Ultra-Low Dose Computed Tomography Attenuation Correction for Pediatric PET CT Using Adaptive Statistical Iterative Reconstruction (ASiR™)

    SciTech Connect

    Brady, S; Shulkin, B

    2015-06-15

    Purpose: To develop ultra-low dose computed tomography (CT) attenuation correction (CTAC) acquisition protocols for pediatric positron emission tomography CT (PET CT). Methods: A GE Discovery 690 PET CT hybrid scanner was used to investigate the change to quantitative PET and CT measurements when operated at ultra-low doses (10–35 mAs). CT quantitation: noise, low-contrast resolution, and CT numbers for eleven tissue substitutes were analyzed in-phantom. CT quantitation was analyzed to a reduction of 90% CTDIvol (0.39/3.64; mGy) radiation dose from baseline. To minimize noise infiltration, 100% adaptive statistical iterative reconstruction (ASiR) was used for CT reconstruction. PET images were reconstructed with the lower-dose CTAC iterations and analyzed for: maximum body weight standardized uptake value (SUVbw) of various diameter targets (range 8–37 mm), background uniformity, and spatial resolution. Radiation organ dose, as derived from patient exam size specific dose estimate (SSDE), was converted to effective dose using the standard ICRP report 103 method. Effective dose and CTAC noise magnitude were compared for 140 patient examinations (76 post-ASiR implementation) to determine relative patient population dose reduction and noise control. Results: CT numbers were constant to within 10% from the non-dose reduced CTAC image down to 90% dose reduction. No change in SUVbw, background percent uniformity, or spatial resolution for PET images reconstructed with CTAC protocols reconstructed with ASiR and down to 90% dose reduction. Patient population effective dose analysis demonstrated relative CTAC dose reductions between 62%–86% (3.2/8.3−0.9/6.2; mSv). Noise magnitude in dose-reduced patient images increased but was not statistically different from pre dose-reduced patient images. Conclusion: Using ASiR allowed for aggressive reduction in CTAC dose with no change in PET reconstructed images while maintaining sufficient image quality for co

  4. Cardiac dosimetric evaluation of deep inspiration breath-hold level variances using computed tomography scans generated from deformable image registration displacement vectors.

    PubMed

    Harry, Taylor; Rahn, Doug; Semenov, Denis; Gu, Xuejun; Yashar, Catheryn; Einck, John; Jiang, Steve; Cerviño, Laura

    2016-01-01

    There is a reduction in cardiac dose for left-sided breast radiotherapy during treatment with deep inspiration breath-hold (DIBH) when compared with treatment with free breathing (FB). Various levels of DIBH may occur for different treatment fractions. Dosimetric effects due to this and other motions are a major component of uncertainty in radiotherapy in this setting. Recent developments in deformable registration techniques allow displacement vectors between various temporal and spatial patient representations to be digitally quantified. We propose a method to evaluate the dosimetric effect to the heart from variable reproducibility of DIBH by using deformable registration to create new anatomical computed tomography (CT) scans. From deformable registration, 3-dimensional deformation vectors are generated with FB and DIBH. The obtained deformation vectors are scaled to 75%, 90%, and 110% and are applied to the reference image to create new CT scans at these inspirational levels. The scans are then imported into the treatment planning system and dose calculations are performed. The average mean dose to the heart was 2.5Gy (0.7 to 9.6Gy) at FB, 1.2Gy (0.6 to 3.8Gy, p < 0.001) at 75% inspiration, 1.1Gy (0.6 to 3.1Gy, p = 0.004) at 90% inspiration, 1.0Gy (0.6 to 3.0Gy) at 100% inspiration or DIBH, and 1.0Gy (0.6 to 2.8Gy, p = 0.019) at 110% inspiration. The average mean dose to the left anterior descending artery (LAD) was 19.9Gy (2.4 to 46.4Gy), 8.6Gy (2.0 to 43.8Gy, p < 0.001), 7.2Gy (1.9 to 40.1Gy, p = 0.035), 6.5Gy (1.8 to 34.7Gy), and 5.3Gy (1.5 to 31.5Gy, p < 0.001), correspondingly. This novel method enables numerous anatomical situations to be mimicked and quantifies the dosimetric effect they have on a treatment plan. PMID:26206154

  5. Cardiac dosimetric evaluation of deep inspiration breath-hold level variances using computed tomography scans generated from deformable image registration displacement vectors.

    PubMed

    Harry, Taylor; Rahn, Doug; Semenov, Denis; Gu, Xuejun; Yashar, Catheryn; Einck, John; Jiang, Steve; Cerviño, Laura

    2016-01-01

    There is a reduction in cardiac dose for left-sided breast radiotherapy during treatment with deep inspiration breath-hold (DIBH) when compared with treatment with free breathing (FB). Various levels of DIBH may occur for different treatment fractions. Dosimetric effects due to this and other motions are a major component of uncertainty in radiotherapy in this setting. Recent developments in deformable registration techniques allow displacement vectors between various temporal and spatial patient representations to be digitally quantified. We propose a method to evaluate the dosimetric effect to the heart from variable reproducibility of DIBH by using deformable registration to create new anatomical computed tomography (CT) scans. From deformable registration, 3-dimensional deformation vectors are generated with FB and DIBH. The obtained deformation vectors are scaled to 75%, 90%, and 110% and are applied to the reference image to create new CT scans at these inspirational levels. The scans are then imported into the treatment planning system and dose calculations are performed. The average mean dose to the heart was 2.5Gy (0.7 to 9.6Gy) at FB, 1.2Gy (0.6 to 3.8Gy, p < 0.001) at 75% inspiration, 1.1Gy (0.6 to 3.1Gy, p = 0.004) at 90% inspiration, 1.0Gy (0.6 to 3.0Gy) at 100% inspiration or DIBH, and 1.0Gy (0.6 to 2.8Gy, p = 0.019) at 110% inspiration. The average mean dose to the left anterior descending artery (LAD) was 19.9Gy (2.4 to 46.4Gy), 8.6Gy (2.0 to 43.8Gy, p < 0.001), 7.2Gy (1.9 to 40.1Gy, p = 0.035), 6.5Gy (1.8 to 34.7Gy), and 5.3Gy (1.5 to 31.5Gy, p < 0.001), correspondingly. This novel method enables numerous anatomical situations to be mimicked and quantifies the dosimetric effect they have on a treatment plan.

  6. Analysis of vector models in quantification of artifacts produced by standard prosthetic inlays in Cone-Beam Computed Tomography (CBCT)--a preliminary study.

    PubMed

    Różyło-Kalinowska, Ingrid; Miechowicz, Sławomir; Sarna-Boś, Katarzyna; Borowicz, Janusz; Kalinowski, Paweł

    2014-11-17

    Cone-beam computed tomography (CBCT) is a relatively new, but highly efficient imaging method applied first in dentistry in 1998. However, the quality of the obtained slices depends among other things on artifacts generated by dental restorations as well as orthodontic and prosthetic appliances. The aim of the study was to quantify the artifacts produced by standard prosthetic inlays in CBCT images. The material consisted of 17 standard prosthetic inlays mounted in dental roots embedded in resin. The samples were examined by means of a large field of view CBCT unit, Galileos (Sirona, Germany), at 85 kV and 14 mAs. The analysis was performed using Able 3DDoctor software for data in the CT raster space as well as by means of Materialise Magics software for generated vector models (STL). The masks generated in the raster space included the area of the inlays together with image artifacts. The region of interest (ROI) of the raster space is a set of voxels from a selected range of Hounsfield units (109-3071). Ceramic inlay with zirconium dioxide (Cera Post) as well as epoxy resin inlay including silica fibers enriched with zirconium (Easy Post) produced the most intense artifacts. The smallest image distortions were created by titanium inlays, both passive (Harald Nordin) and active (Flexi Flange). Inlays containing zirconium generated the strongest artifacts, thus leading to the greatest distortions in the CBCT images. Carbon fiber inlay did not considerably affect the image quality.

  7. Analysis of vector models in quantification of artifacts produced by standard prosthetic inlays in Cone-Beam Computed Tomography (CBCT)--a preliminary study.

    PubMed

    Różyło-Kalinowska, Ingrid; Miechowicz, Sławomir; Sarna-Boś, Katarzyna; Borowicz, Janusz; Kalinowski, Paweł

    2014-01-01

    Cone-beam computed tomography (CBCT) is a relatively new, but highly efficient imaging method applied first in dentistry in 1998. However, the quality of the obtained slices depends among other things on artifacts generated by dental restorations as well as orthodontic and prosthetic appliances. The aim of the study was to quantify the artifacts produced by standard prosthetic inlays in CBCT images. The material consisted of 17 standard prosthetic inlays mounted in dental roots embedded in resin. The samples were examined by means of a large field of view CBCT unit, Galileos (Sirona, Germany), at 85 kV and 14 mAs. The analysis was performed using Able 3DDoctor software for data in the CT raster space as well as by means of Materialise Magics software for generated vector models (STL). The masks generated in the raster space included the area of the inlays together with image artifacts. The region of interest (ROI) of the raster space is a set of voxels from a selected range of Hounsfield units (109-3071). Ceramic inlay with zirconium dioxide (Cera Post) as well as epoxy resin inlay including silica fibers enriched with zirconium (Easy Post) produced the most intense artifacts. The smallest image distortions were created by titanium inlays, both passive (Harald Nordin) and active (Flexi Flange). Inlays containing zirconium generated the strongest artifacts, thus leading to the greatest distortions in the CBCT images. Carbon fiber inlay did not considerably affect the image quality. PMID:25404623

  8. Beam-hardening correction by a surface fitting and phase classification by a least square support vector machine approach for tomography images of geological samples

    NASA Astrophysics Data System (ADS)

    Khan, F.; Enzmann, F.; Kersten, M.

    2015-12-01

    In X-ray computed microtomography (μXCT) image processing is the most important operation prior to image analysis. Such processing mainly involves artefact reduction and image segmentation. We propose a new two-stage post-reconstruction procedure of an image of a geological rock core obtained by polychromatic cone-beam μXCT technology. In the first stage, the beam-hardening (BH) is removed applying a best-fit quadratic surface algorithm to a given image data set (reconstructed slice), which minimizes the BH offsets of the attenuation data points from that surface. The final BH-corrected image is extracted from the residual data, or the difference between the surface elevation values and the original grey-scale values. For the second stage, we propose using a least square support vector machine (a non-linear classifier algorithm) to segment the BH-corrected data as a pixel-based multi-classification task. A combination of the two approaches was used to classify a complex multi-mineral rock sample. The Matlab code for this approach is provided in the Appendix. A minor drawback is that the proposed segmentation algorithm may become computationally demanding in the case of a high dimensional training data set.

  9. Active high-resolution seismic tomography of compressional wave velocity and attenuation structure at Medicine Lake Volcano, Northern California Cascade Range

    NASA Astrophysics Data System (ADS)

    Evans, John R.; Zucca, John J.

    1988-12-01

    We determine compressional wave velocity and attenuation structures for the upper crust beneath Medicine Lake volcano in northeast California using a high-resolution active source seismic tomography method. Medicine Lake volcano is a basalt through rhyolite shield volcano of the Cascade Range, lying east of the range axis. The Pg wave from eight explosive sources which has traveled upward through the target volume to a dense array of 140 seismographs provides 1- to 2-km resolution in the upper 5 to 7 km of the crust beneath the volcano. The experiment tests the hypothesis that Cascade Range volcanoes of this type are underlain only by small silicic magma chambers. We image a low-velocity low-Q region not larger than a few tens of cubic kilometers in volume beneath the summit caldera, supporting the hypothesis. A shallower high-velocity high-density feature, previously known to be present, is imaged for the first time in full plan view; it is east-west elongate, paralleling a topographic lineament between Medicine Lake volcano and Mount Shasta. This lineament is interpreted to be the result of an old crustal weakness now affecting the emplacement of magma, both on direct ascent from the lower crust and mantle and in migration from the shallow silicic chamber to summit vents. Differences between this high-velocity feature and the equivalent feature at Newbeny volcano, a volcano in central Oregon resembling Medicine Lake volcano, may partly explain the scarcity of surface hydrothermal features at Medicine Lake volcano. A major low-velocity low-Q feature beneath the southeast flank of the volcano, in an area with no Holocene vents, is interpreted as tephra, flows, and sediments from the volcano deeply ponded on the downthrown side of the Gillem fault, a normal fault mapped at the surface north of the volcano. A high-Q normal-velocity feature beneath the north rim of the summit caldera may be a small, possibly hot, subsolidus intrusion. A high-velocity low-Q region

  10. Multimeric soluble CD40 ligand (sCD40L) efficiently enhances HIV specific cellular immune responses during DNA prime and boost with attenuated poxvirus vectors MVA and NYVAC expressing HIV antigens.

    PubMed

    Gómez, Carmen E; Nájera, José L; Sánchez, Raquel; Jiménez, Victoria; Esteban, Mariano

    2009-05-21

    The attenuated poxvirus vectors MVA and NYVAC are now in clinical trials against HIV/AIDS. Due to the vectors restricted replication capacity in human cells, approaches to enhance their immunogenicity are highly desirable. Here, we have analyzed the ability of a soluble form of hexameric CD40L (sCD40L) to stimulate specific immune responses to HIV antigens when inoculated in mice during priming with DNA and in the booster with MVA or NYVAC, expressing the vectors HIV-1 Env, Gag, Pol and Nef antigens from clade B. Our findings revealed that sCD40L in DNA/poxvirus combination enhanced the magnitude about 2-fold (DNA-B/MVA-B) and 4-fold (DNA-B/NYVAC-B), as well as the breath of the HIV antigen specific cellular immune responses. sCD40L was necessary in both prime and boost inoculations triggering a potent polarization of the Th response towards a Th1 type. In DNA-B/NYVAC-B regime the addition of sCD40L significantly enhanced the humoral immune response against HIV gp160, but not in DNA-B/MVA-B combination. These findings provided evidence for the immunostimulatory benefit of sCD40L when DNA and the poxvirus vectors MVA and NYVAC are used as immunogens.

  11. Three-dimensional, three-vector-component velocimetry of cilia-driven fluid flow using correlation-based approaches in optical coherence tomography

    PubMed Central

    Huang, Brendan K.; Gamm, Ute A.; Bhandari, Vineet; Khokha, Mustafa K.; Choma, Michael A.

    2015-01-01

    Microscale quantification of cilia-driven fluid flow is an emerging area in medical physiology, including pulmonary and central nervous system physiology. Cilia-driven fluid flow is most completely described by a three-dimensional, three-component (3D3C) vector field. Here, we generate 3D3C velocimetry measurements by synthesizing higher dimensional data from lower dimensional measurements obtained using two separate optical coherence tomography (OCT)-based approaches: digital particle image velocimetry (DPIV) and dynamic light scattering (DLS)-OCT. Building on previous work, we first demonstrate directional DLS-OCT for 1D2C velocimetry measurements in the sub-1 mm/s regime (sub-2.5 inch/minute regime) of cilia-driven fluid flow in Xenopus epithelium, an important animal model of the ciliated respiratory tract. We then extend our analysis toward 3D3C measurements in Xenopus using both DLS-OCT and DPIV. We demonstrate the use of DPIV-based approaches towards flow imaging of Xenopus cerebrospinal fluid and mouse trachea, two other important ciliary systems. Both of these flows typically fall in the sub-100 μm/s regime (sub-0.25 inch/minute regime). Lastly, we develop a framework for optimizing the signal-to-noise ratio of 3D3C flow velocity measurements synthesized from 2D2C measures in non-orthogonal planes. In all, 3D3C OCT-based velocimetry has the potential to comprehensively characterize the flow performance of biological ciliated surfaces. PMID:26417520

  12. Cognitive MMN and P300 in mild cognitive impairment and Alzheimer's disease: A high density EEG-3D vector field tomography approach.

    PubMed

    Papadaniil, Chrysa D; Kosmidou, Vasiliki E; Tsolaki, Anthoula; Tsolaki, Magda; Kompatsiaris, Ioannis Yiannis; Hadjileontiadis, Leontios J

    2016-10-01

    Precise preclinical detection of dementia for effective treatment and stage monitoring is of great importance. Miscellaneous types of biomarkers, e.g., biochemical, genetic, neuroimaging, and physiological, have been proposed to diagnose Alzheimer's disease (AD), the usual suspect behind manifested cognitive decline, and mild cognitive impairment (MCI), a neuropathology prior to AD that does not affect cognitive functions. Event related potential (ERP) methods constitute a non-invasive, inexpensive means of analysis and have been proposed as sensitive biomarkers of cognitive impairment; besides, various ERP components are strongly linked with working memory, attention, sensory processing and motor responses. In this study, an auditory oddball task is employed, to acquire high density electroencephalograhy recordings from healthy elderly controls, MCI and AD patients. The mismatch negativity (MMN) and P300 ERP components are then extracted and their relationship with neurodegeneration is examined. Then, the neural activation at these components is reconstructed using the 3D vector field tomography (3D-VFT) inverse solution. The results reveal a decline of both ERPs amplitude, and a statistically significant prolongation of their latency as cognitive impairment advances. For the MMN, higher brain activation is usually localized in the inferior frontal and superior temporal gyri in the controls. However, in AD, parietal sites exhibit strong activity. Stronger P300 generators are mostly found in the frontal lobe for the controls, but in AD they often shift to the temporal lobe. Reduction in inferior frontal source strength and the switch of the maximum intensity area to parietal and superior temporal sites suggest that these areas, especially the former, are of particular significance when neurodegenerative disorders are investigated. The modulation of MMN and P300 can serve to produce biomarkers of dementia and its progression, and brain imaging can further contribute

  13. Inter-crystal scatter identification for a depth-sensitive detector using support vector machine for small animal positron emission tomography

    NASA Astrophysics Data System (ADS)

    Yoshida, Eiji; Kitamura, Keishi; Kimura, Yuichi; Nishikido, Fumihiko; Shibuya, Kengo; Yamaya, Taiga; Murayama, Hideo

    2007-02-01

    In a conventional positron emission tomography (PET) detector, detected events are projected onto a 2D position histogram by an Anger calculation for crystal identification. However, the measured histogram is affected by inter-crystal scatterings (ICS) which occur in the entire detector. Peaks which are projected for each crystal in the histogram are blurred, and this causes ICS mispositioning. A depth-of-interaction (DOI) detector has been developed for the small animal PET scanner jPET-RD. This DOI detector uses 32×32 crystals with four layers and a 256-channel multi-anode flat panel photomultiplier tube (FP-PMT) which was developed by Hamamatsu Photonics K.K. Each crystal element is 1.45×1.45×4.5 mm 3. The FP-PMT has a large detective area (49×49 mm 2) and a small anode pitch (3.04 mm). Therefore, the FP-PMT can extensively trace the behavior of incident γ rays in the crystals including ICS event. We, therefore, propose a novel method for ICS estimation using a statistical pattern recognition algorithm based on a support vector machine (SVM). In this study, we applied the SVM for discriminating photoelectric events from ICS events generated from multiple-anode outputs. The SVM was trained by uniform irradiation events generated from a detector simulator using a Monte Carlo calculation. The success rate for ICS event identification is about 78% for non-training data. The SVM can achieve a true subtraction of ICS events from measured events, and it is also useful for random correction in PET.

  14. Three-dimensional, three-vector-component velocimetry of cilia-driven fluid flow using correlation-based approaches in optical coherence tomography.

    PubMed

    Huang, Brendan K; Gamm, Ute A; Bhandari, Vineet; Khokha, Mustafa K; Choma, Michael A

    2015-09-01

    Microscale quantification of cilia-driven fluid flow is an emerging area in medical physiology, including pulmonary and central nervous system physiology. Cilia-driven fluid flow is most completely described by a three-dimensional, three-component (3D3C) vector field. Here, we generate 3D3C velocimetry measurements by synthesizing higher dimensional data from lower dimensional measurements obtained using two separate optical coherence tomography (OCT)-based approaches: digital particle image velocimetry (DPIV) and dynamic light scattering (DLS)-OCT. Building on previous work, we first demonstrate directional DLS-OCT for 1D2C velocimetry measurements in the sub-1 mm/s regime (sub-2.5 inch/minute regime) of cilia-driven fluid flow in Xenopus epithelium, an important animal model of the ciliated respiratory tract. We then extend our analysis toward 3D3C measurements in Xenopus using both DLS-OCT and DPIV. We demonstrate the use of DPIV-based approaches towards flow imaging of Xenopus cerebrospinal fluid and mouse trachea, two other important ciliary systems. Both of these flows typically fall in the sub-100 μm/s regime (sub-0.25 inch/minute regime). Lastly, we develop a framework for optimizing the signal-to-noise ratio of 3D3C flow velocity measurements synthesized from 2D2C measures in non-orthogonal planes. In all, 3D3C OCT-based velocimetry has the potential to comprehensively characterize the flow performance of biological ciliated surfaces.

  15. Controllable attenuators

    NASA Astrophysics Data System (ADS)

    Krylov, G. M.; Khoniak, E. I.; Tynynyka, A. N.; Iliushenko, V. N.; Sikolenko, S. F.

    Methods for the synthesis of controllable attenuators and their implementations are examined. In particular, attention is given to the general properties of controllable attenuators, control elements, types of controllable attenuators and methods of their analysis, and synthesis of the control characteristic of attenuators. The discussion also covers the efficiency of attenuator control, the use of transmission line segments in wide-band controllable attenuators, and attenuators with a discretely controlled transmission coefficient.

  16. Efficacy of HVT-IBD vector vaccine compared to attenuated live vaccine using in-ovo vaccination against a Korean very virulent IBDV in commercial broiler chickens.

    PubMed

    Roh, J-H; Kang, M; Wei, B; Yoon, R-H; Seo, H-S; Bahng, J-Y; Kwon, J-T; Cha, S-Y; Jang, H-K

    2016-05-01

    The production performance, efficacy, and safety of two types of vaccines for infectious bursal disease virus (IBDV) were compared with in-ovo vaccination of Cobb 500 broiler chickens for gross and microscopic examination of the bursa of Fabricius, bursa/body weight (b/B) ratio, flow cytometry, and serologic response to Newcastle disease virus (NDV) vaccination. One vaccine was a recombinant HVT-IBD vector vaccine (HVT as for herpesvirus of turkeys) and the other was an intermediate plus live IBDV vaccine. A significant difference was detected at 21 d. Eight of 10 chickens that received the IBDV live vaccine had severe bursal lesions and a relatively low b/B ratio of 0.95, and an inhibited NDV vaccine response. On the other hand, the HVT-IBD vector vaccine resulted in mild bursal lesions and a b/B ratio of 1.89. Therefore, the live vaccine had lower safety than that of the HVT-IBD vector vaccine. To determine the protective efficacy, chickens were intraocularly challenged at 24 d. Eight of 10 chickens in the IBDV live vaccination group showed gross and histological lesions characterized by hemorrhage, cyst formation, lymphocytic depletion, and a decreased b/B ratio. In contrast, the HVT-IBD vector vaccinated chickens showed mild gross and histological lesions in three of 10 chickens with a b/B ratio of 1.36, which was similar to that of the unchallenged controls. Vaccinated chickens showed a significant increase in IBDV antibody titers, regardless of the type of vaccine used. In addition, significantly better broiler flock performance was observed with the HVT-IBD vector vaccine compared to that of the live vaccine. Our results revealed that the HVT-IBD vector vaccine could be used as an alternative vaccine to increase efficacy, and to have an improved safety profile compared with the IBDV live vaccine using in-ovo vaccination against the Korean very virulent IBDV in commercial broiler chickens. PMID:26944964

  17. Vector-mediated release of GABA attenuates pain-related behaviors and reduces NaV1.7 in DRG neurons

    PubMed Central

    Chattopadhyay, Munmun; Mata, Marina; Fink, David J.

    2012-01-01

    Pain is a common and debilitating accompaniment of neuropathy that occurs as a complication of diabetes. In the current study, we examined the effect of continuous release of gamma amino butyric acid (GABA), achieved by gene transfer of glutamic acid decarboxylase (GAD67) to dorsal root ganglia (DRG) in vivo using a nonreplicating herpes simplex virus (HSV)-based vector (vG) in a rat model of painful diabetic neuropathy (PDN). Subcutaneous inoculation of vG reduced mechanical hyperalgesia, thermal hyperalgesia and cold allodynia in rats with PDN. Continuous release of GABA from vector transduced cells in vivo prevented the increase in the voltage gated sodium channel isoform 1.7 (NaV1.7) protein that is characteristic of PDN. In vitro, infection of primary DRG neurons with vG prevented the increase in NaV1.7 resulting from exposure to hyperglycemia. The effect of vector-mediated GABA on NaV1.7 levels in vitro was blocked by phaclofen but not by bicuculline, a GABAB receptor effect that was blocked by pertussis toxin-(PTX) interference with Gα(i/o) function. Taken in conjunction with our previous observation that continuous activation of delta opioid receptors by vector-mediated release of enkephalin also prevents the increase in NaV1.7 in DRG exposed to hyperglycemia in vitro or in vivo, the observations in this report suggest a novel common mechanism through which activation of G protein coupled receptors (GPCR) in DRG neurons regulate the phenotype of the primary afferent. PMID:21486703

  18. Structure of the Cocos subduction zone in central and southern Mexico from three-dimensional body-wave attenuation and travel time tomography

    NASA Astrophysics Data System (ADS)

    Chen, T.; Clayton, R. W.

    2011-12-01

    The 3D P- and S-wave attenuation and velocity structure of the Cocos subduction zone in Mexico is imaged using seismic events recorded by the MASE (100 seismometers running across central Mexico, 2005-2007) and VEOX (47 seismometers running across southern Mexico, 2007-2009) arrays, supplemented by stations from the National Seismic Network in Mexico (SSN). Using a spectral-decay method, we obtain a path attenuation operator t* for each seismogram in the frequency band 1 to 30 Hz, depending on the signal quality. These measurements are then inverted for 3D spatial variations in attenuation. Direct body-wave arrivals from local events are used for 3D velocity inversion. Deeper velocity structures along MASE and VEOX arrays are obtained by including teleseismic events. Inversion results show low attenuation associated with the Cocos slab, and show the slab dip angle increases from central to southern Mexico. High attenuation is imaged in the mantle wedge and the crust above. The highest attenuation is found in the crust near the active Los Tuxtlas volcanic field, probably related to the dehydration and melting process. Low velocity is observed in the mantle wedge and the crust above from velocity inversion. The Cocos slab is traced as high-velocity structure. The Cocos slab dips down to about 500 km in central Mexico along MASE array as shown by previous study (Perez-Campos, GRL, 2008). In southern Mexico along VEOX line, no clear continuous Cocos slab is observed deeper than about 150 km, which is also found by receiver function studies (Kim et al., in press; Perez-Campos et al., in press). There are some indications that the Cocos slab in southern Mexico near the Isthmus of Tehuantepec is truncated by some high-velocity structure dipping south from the Gulf of Mexico. This anomalous south-dipping structure is also seen in receiver function images, and may be related to the collision between the Yucatan Block and Mexico in the Miocene (Kim et al., in press).

  19. Geophysical wave tomography

    NASA Astrophysics Data System (ADS)

    Zhou, Chaoguang

    2000-11-01

    This study is concerned with geophysical wave tomography techniques that include advanced diffraction tomography, traveltime calculation techniques and simultaneous attenuation and velocity tomography approaches. We propose the source independent approximation, the Modified Quasi-Linear approximation and develop a fast and accurate diffraction tomography algorithm that uses this approximation. Since the Modified Quasi-Linear approximation accounts for the scattering fields within scatterers, this tomography algorithm produces better image quality than conventional Born approximation tomography algorithm does with or without the presence of multiple scatterers and can be used to reconstruct images of high contrast objects. Since iteration is not required, this algorithm is efficient. We improve the finite difference traveltime calculation algorithm proposed by Vidale (1990). The bucket theory is utilized in order to enhance the sorting efficiency, which accounts for about ten percent computing time improvement for large velocity models. Snell's law is employed to solve the causality problem analytically, which enables the modified algorithm to compute traveltimes accurately and rapidly for high velocity contrast media. We also develop two simultaneous attenuation and velocity tomography approaches, which use traveltimes and amplitude spectra of the observed data, and discuss some of their applications. One approach is processing geophysical data that come from one single survey and the other deals with the repeated survey cases. These approaches are nonlinear and therefore more accurate than linear tomography. A linear system for wave propagation and constant-Q media are assumed in order to develop the tomography algorithms. These approaches not only produce attenuation and velocity images at the same time but also can be used to infer the physical rock properties, such as the dielectric permittivity, the electric conductivity, and the porosity. A crosshole radar

  20. Implication of respiratory syncytial virus (RSV) F transgene sequence heterogeneity observed in Phase 1 evaluation of MEDI-534, a live attenuated parainfluenza type 3 vectored RSV vaccine.

    PubMed

    Yang, Chin-Fen; Wang, C Kathy; Malkin, Elissa; Schickli, Jeanne H; Shambaugh, Cindy; Zuo, Fengrong; Galinski, Mark S; Dubovsky, Filip; Tang, Roderick S

    2013-06-10

    MEDI-534 is the first live vectored RSV vaccine candidate to be evaluated in seronegative children. It consists of the bovine parainfluenza virus type 3 (PIV3) genome with substituted human PIV3 F and HN glycoproteins engineered to express RSV F protein. A Phase 1 study of 49 healthy RSV and PIV3 seronegative children 6 to <24 months of age demonstrated an acceptable safety profile at the following doses: 10(4), 10(5) and 10(6)TCID50. After 3 doses of MEDI-534 at 10(6)TCID50, administered at 0, 2 and 4 month intervals, 100% of subjects seroresponded to PIV3, whereas only 50% seroresponded to RSV. To investigate the discordance in seroresponse rates, the RSV F transgene and its flanking non-coding nucleotides were sequenced from shed virus recovered from the nasal washes of 24 MEDI-534-vaccinated children. Eleven out of 24 samples contained no nucleotide changes in the analyzed region. The other 13 samples contained mixtures of variant subpopulations. Fifty-five percent exhibited changes in the transcription termination poly A gene sequences of the upstream bPIV3N gene while 21% had variant subpopulations in the RSV F open reading frame that resulted in pre-mature stop codons. Both types of changes are expected to reduce RSV F expression. Evaluation of the administered vaccine by dual immunofluorescence staining showed ~2.5% variants with low or no RSV F expression while single nucleotide primer extension detected ~1% variation at nucleotide 2045 that resulted in a pre-mature translational termination at codon 85. An association between shedding of variants and lower RSV F serological response was observed but it was not possible to establish a definitive clinical significance due to the small number of subjects in this study.

  1. Introducing Vectors.

    ERIC Educational Resources Information Center

    Roche, John

    1997-01-01

    Suggests an approach to teaching vectors that promotes active learning through challenging questions addressed to the class, as opposed to subtle explanations. Promotes introducing vector graphics with concrete examples, beginning with an explanation of the displacement vector. Also discusses artificial vectors, vector algebra, and unit vectors.…

  2. Analysis of Age-Related Changes in Asian Facial Skeletons Using 3D Vector Mathematics on Picture Archiving and Communication System Computed Tomography

    PubMed Central

    Kim, Soo Jin; Kim, So Jung; Park, Jee Soo; Byun, Sung Wan

    2015-01-01

    Purpose There are marked differences in facial skeletal characteristics between Asian and Caucasian. However, ethnic differences in age-related facial skeletal changes have not yet been fully established. The aims of this study were to evaluate age-related changes in Asian midfacial skeletons and to explore ethnic differences in facial skeletal structures with aging between Caucasian and Asian. Materials and Methods The study included 108 men (aged 20-79 years) and 115 women (aged 20-81 years). Axial CT images with a gantry tilt angle of 0 were analyzed. We measured three-dimensional (3D) coordinates at each point with a pixel lens cursor in a picture archiving and communication system (PACS), and angles and widths between the points were calculated using 3D vector mathematics. We analyzed angular changes in 4 bony regions, including the glabellar, orbital, maxillary, and pyriform aperture regions, and changes in the orbital aperture width (distance from the posterior lacrimal crest to the frontozygomatic suture) and the pyriform width (between both upper margins of the pyriform aperture). Results All 4 midfacial angles in females and glabellar and maxillary angles in males showed statistically significant decreases with aging. On the other hand, the orbital and pyriform widths did not show statistically significant changes with aging. Conclusion The results of this study suggest that Asian midfacial skeletons may change continuously throughout life, and that there may be significant differences in the midfacial skeleton between both sexes and between ethnic groups. PMID:26256986

  3. Enhanced local tomography

    DOEpatents

    Katsevich, Alexander J.; Ramm, Alexander G.

    1996-01-01

    Local tomography is enhanced to determine the location and value of a discontinuity between a first internal density of an object and a second density of a region within the object. A beam of radiation is directed in a predetermined pattern through the region of the object containing the discontinuity. Relative attenuation data of the beam is determined within the predetermined pattern having a first data component that includes attenuation data through the region. In a first method for evaluating the value of the discontinuity, the relative attenuation data is inputted to a local tomography function .function..sub..LAMBDA. to define the location S of the density discontinuity. The asymptotic behavior of .function..sub..LAMBDA. is determined in a neighborhood of S, and the value for the discontinuity is estimated from the asymptotic behavior of .function..sub..LAMBDA.. In a second method for evaluating the value of the discontinuity, a gradient value for a mollified local tomography function .gradient..function..sub..LAMBDA..epsilon. (x.sub.ij) is determined along the discontinuity; and the value of the jump of the density across the discontinuity curve (or surface) S is estimated from the gradient values.

  4. Generalized local emission tomography

    DOEpatents

    Katsevich, Alexander J.

    1998-01-01

    Emission tomography enables locations and values of internal isotope density distributions to be determined from radiation emitted from the whole object. In the method for locating the values of discontinuities, the intensities of radiation emitted from either the whole object or a region of the object containing the discontinuities are inputted to a local tomography function .function..sub..LAMBDA..sup.(.PHI.) to define the location S of the isotope density discontinuity. The asymptotic behavior of .function..sub..LAMBDA..sup.(.PHI.) is determined in a neighborhood of S, and the value for the discontinuity is estimated from the asymptotic behavior of .function..sub..LAMBDA..sup.(.PHI.) knowing pointwise values of the attenuation coefficient within the object. In the method for determining the location of the discontinuity, the intensities of radiation emitted from an object are inputted to a local tomography function .function..sub..LAMBDA..sup.(.PHI.) to define the location S of the density discontinuity and the location .GAMMA. of the attenuation coefficient discontinuity. Pointwise values of the attenuation coefficient within the object need not be known in this case.

  5. Computed tomography of intramuscular myxoma

    SciTech Connect

    Ekelund, L.; Herrlin, K.; Rydholm, A.

    1982-11-01

    Computed tomography (CT) was performed in seven patients with intramuscular myxoma. All lesions were well demarcated, of homogeneous appearance and attenuation values ranging from 10 to 60 (HU). The tumor size, as estimated at CT, correlated well with the size of the surgical specimen, which is in contrast to the findings in some high grade malignant sarcomas.

  6. Method of determining ultrasonic attenuation of tissue using reflective tomographic reconstruction

    SciTech Connect

    Flax, S. W.; Glover, G. H.

    1984-10-09

    Ultrasonic wave attenuation is determined for a plurality of limited volumes of tissue comprising a body under examination by directing ultrasonic waves through each limited volume along a plurality of vectors, determining a measure of attenuation of the limited volume by detecting the frequency shift of reflections of the ultrasonic wave along each vector, and averaging the attenuation of each limited volume from each vector intersecting the limited volume.

  7. Waste inspection tomography (WIT)

    SciTech Connect

    Bernardi, R.T.

    1996-12-31

    WIT is a self-sufficient mobile semitrailer for nondestructive evaluation and nondestructive assay of nuclear waste drums using x-ray and gamma-ray tomography. The recently completed Phase I included the design, fabrication, and initial testing of all WIT subsystems installed on-board the trailer. Initial test results include 2 MeV digital radiography, computed tomography, Anger camera imaging, single photon emission computed tomography, gamma-ray spectroscopy, collimated gamma scanning, and active and passive computed tomography using a 1.4 mCi source of {sup 166}Ho. These techniques were initially demonstrated on a 55-gallon phantom drum with 3 simulated waste matrices of combustibles, heterogeneous metals, and cement using check sources of gamma active isotopes such as {sup 137}Cs and {sup 133}Ba with 9-250 {mu}Ci activities. Waste matrix identification, isotopic identification, and attenuation-corrected gamma activity determination were demonstrated nondestructively and noninvasively in Phase I. Currently ongoing Phase II involves DOE site field test demonstrations at LLNL, RFETS, and INEL with real nuclear waste drums. Current WIT experience includes 55 gallon drums of cement, graphite, sludge, glass, metals, and combustibles. Thus far WIT has inspected drums with 0-20 gms of {sup 239}Pu.

  8. Cloning vector

    DOEpatents

    Guilfoyle, R.A.; Smith, L.M.

    1994-12-27

    A vector comprising a filamentous phage sequence containing a first copy of filamentous phage gene X and other sequences necessary for the phage to propagate is disclosed. The vector also contains a second copy of filamentous phage gene X downstream from a promoter capable of promoting transcription in a bacterial host. In a preferred form of the present invention, the filamentous phage is M13 and the vector additionally includes a restriction endonuclease site located in such a manner as to substantially inactivate the second gene X when a DNA sequence is inserted into the restriction site. 2 figures.

  9. Cloning vector

    DOEpatents

    Guilfoyle, Richard A.; Smith, Lloyd M.

    1994-01-01

    A vector comprising a filamentous phage sequence containing a first copy of filamentous phage gene X and other sequences necessary for the phage to propagate is disclosed. The vector also contains a second copy of filamentous phage gene X downstream from a promoter capable of promoting transcription in a bacterial host. In a preferred form of the present invention, the filamentous phage is M13 and the vector additionally includes a restriction endonuclease site located in such a manner as to substantially inactivate the second gene X when a DNA sequence is inserted into the restriction site.

  10. Computed Tomography

    NASA Astrophysics Data System (ADS)

    Castellano, Isabel; Geleijns, Jacob

    After its clinical introduction in 1973, computed tomography developed from an x-ray modality for axial imaging in neuroradiology into a versatile three dimensional imaging modality for a wide range of applications in for example oncology, vascular radiology, cardiology, traumatology and even in interventional radiology. Computed tomography is applied for diagnosis, follow-up studies and screening of healthy subpopulations with specific risk factors. This chapter provides a general introduction in computed tomography, covering a short history of computed tomography, technology, image quality, dosimetry, room shielding, quality control and quality criteria.

  11. Vector quantization

    NASA Technical Reports Server (NTRS)

    Gray, Robert M.

    1989-01-01

    During the past ten years Vector Quantization (VQ) has developed from a theoretical possibility promised by Shannon's source coding theorems into a powerful and competitive technique for speech and image coding and compression at medium to low bit rates. In this survey, the basic ideas behind the design of vector quantizers are sketched and some comments made on the state-of-the-art and current research efforts.

  12. Waste inspection tomography (WIT)

    SciTech Connect

    Bernardi, R.T.

    1995-10-01

    Waste Inspection Tomography (WIT) provides mobile semi-trailer mounted nondestructive examination (NDE) and assay (NDA) for nuclear waste drum characterization. WIT uses various computed tomography (CT) methods for both NDE and NDA of nuclear waste drums. Low level waste (LLW), transuranic (TRU), and mixed radioactive waste can be inspected and characterized without opening the drums. With externally transmitted x-ray NDE techniques, WIT has the ability to identify high density waste materials like heavy metals, define drum contents in two- and three-dimensional space, quantify free liquid volumes through density and x-ray attenuation coefficient discrimination, and measure drum wall thickness. With waste emitting gamma-ray NDA techniques, WIT can locate gamma emitting radioactive sources in two- and three-dimensional space, identify gamma emitting, isotopic species, identify the external activity levels of emitting gamma-ray sources, correct for waste matrix attenuation, provide internal activity approximations, and provide the data needed for waste classification as LLW or TRU.

  13. Lentiviral vectors.

    PubMed

    Giry-Laterrière, Marc; Verhoeyen, Els; Salmon, Patrick

    2011-01-01

    Lentiviral vectors have evolved over the last decade as powerful, reliable, and safe tools for stable gene transfer in a wide variety of mammalian cells. Contrary to other vectors derived from oncoretroviruses, they allow for stable gene delivery into most nondividing primary cells. In particular, lentivectors (LVs) derived from HIV-1 have gradually evolved to display many desirable features aimed at increasing both their safety and their versatility. This is why lentiviral vectors are becoming the most useful and promising tools for genetic engineering, to generate cells that can be used for research, diagnosis, and therapy. This chapter describes protocols and guidelines, for production and titration of LVs, which can be implemented in a research laboratory setting, with an emphasis on standardization in order to improve transposability of results between laboratories. We also discuss latest designs in LV technology.

  14. DC attenuation meter

    DOEpatents

    Hargrove, Douglas L.

    2004-09-14

    A portable, hand-held meter used to measure direct current (DC) attenuation in low impedance electrical signal cables and signal attenuators. A DC voltage is applied to the signal input of the cable and feedback to the control circuit through the signal cable and attenuators. The control circuit adjusts the applied voltage to the cable until the feedback voltage equals the reference voltage. The "units" of applied voltage required at the cable input is the system attenuation value of the cable and attenuators, which makes this meter unique. The meter may be used to calibrate data signal cables, attenuators, and cable-attenuator assemblies.

  15. Attenuation correction for small animal PET tomographs

    NASA Astrophysics Data System (ADS)

    Chow, Patrick L.; Rannou, Fernando R.; Chatziioannou, Arion F.

    2005-04-01

    Attenuation correction is one of the important corrections required for quantitative positron emission tomography (PET). This work will compare the quantitative accuracy of attenuation correction using a simple global scale factor with traditional transmission-based methods acquired either with a small animal PET or a small animal x-ray computed tomography (CT) scanner. Two phantoms (one mouse-sized and one rat-sized) and two animal subjects (one mouse and one rat) were scanned in CTI Concorde Microsystem's microPET® Focus™ for emission and transmission data and in ImTek's MicroCAT™ II for transmission data. PET emission image values were calibrated against a scintillation well counter. Results indicate that the scale factor method of attenuation correction places the average measured activity concentration about the expected value, without correcting for the cupping artefact from attenuation. Noise analysis in the phantom studies with the PET-based method shows that noise in the transmission data increases the noise in the corrected emission data. The CT-based method was accurate and delivered low-noise images suitable for both PET data correction and PET tracer localization.

  16. Pressure surge attenuator

    DOEpatents

    Christie, Alan M.; Snyder, Kurt I.

    1985-01-01

    A pressure surge attenuation system for pipes having a fluted region opposite crushable metal foam. As adapted for nuclear reactor vessels and heads, crushable metal foam is disposed to attenuate pressure surges.

  17. EDITORIAL: Industrial Process Tomography

    NASA Astrophysics Data System (ADS)

    West, Robert M.

    2004-07-01

    . Interest in magnetic induction tomography has evolved recently and I am pleased to note the inclusion of new work in that modality by Casanova et al. Note that this work also makes full use of prior information to improve reconstruction results. A modality that is relatively new to industrial applications is featured by Holstein et al, namely acoustic tomography. The novelty is provided by using measurements of the speed of sound in gas (air) to identify temperature distributions. Two well chosen applications illustrate the technique. Hard-field tomography, that is the modalities of x-ray and gamma-ray tomography, has always been of interest for some industrial applications. Often this has been for the high resolution of reconstructions available with these techniques, but there application has been restricted due to concerns about use of ionizing radiation. Cattle et al include an application to a process where the material to be imaged is a gamma emitter, i.e. only passive sources are used. The novelty here is that both source and attenuation information is used concurrently to obtain reconstructions. I thank the authors for a fascinating collection of papers that reflect current interest in the subject of industrial process tomography.

  18. Seismic Tomography.

    ERIC Educational Resources Information Center

    Anderson, Don L.; Dziewonski, Adam M.

    1984-01-01

    Describes how seismic tomography is used to analyze the waves produced by earthquakes. The information obtained from the procedure can then be used to map the earth's mantle in three dimensions. The resulting maps are then studied to determine such information as the convective flow that propels the crustal plates. (JN)

  19. Tracer attenuation in groundwater

    NASA Astrophysics Data System (ADS)

    Cvetkovic, Vladimir

    2011-12-01

    The self-purifying capacity of aquifers strongly depends on the attenuation of waterborne contaminants, i.e., irreversible loss of contaminant mass on a given scale as a result of coupled transport and transformation processes. A general formulation of tracer attenuation in groundwater is presented. Basic sensitivities of attenuation to macrodispersion and retention are illustrated for a few typical retention mechanisms. Tracer recovery is suggested as an experimental proxy for attenuation. Unique experimental data of tracer recovery in crystalline rock compare favorably with the theoretical model that is based on diffusion-controlled retention. Non-Fickian hydrodynamic transport has potentially a large impact on field-scale attenuation of dissolved contaminants.

  20. Sn Attenuation in the Middle-East

    NASA Astrophysics Data System (ADS)

    Ku, W.; Kaviani, A.; Bao, X.; Sandvol, E. A.

    2015-12-01

    The Turkish-Iranian Plateau and Zagros Mountains, a dominant tectonic feature in the Middle-East, were formed as a result of the continental collision (between Arabian plate and Eurasia plates). In order to better understand the nature of the lithosphere mantle and origin of the measure seismic velocity anomalies we have made detailed measurements of the uppermost mantle attenuation using the high frequency regional phase Sn. In order to measure Sn attenuation. We have collected a large data set consisting of 18 years (1995-2012) of waveforms recorded by 305 permanent and temporary stations. We used a bandpass filter (0.1-0.5Hz) to identify efficient longer period Sn phases. In order to determine Sn Q we applied a Two Station Method (TSM) and Reverse Two Station Method (RTM) to eliminate the source effects. We have used the LSQR algorithm to tomographically map Sn attenuation tomography across the Middle-East. We also determined the Sn propagation efficiencies visually and tomographically map qualitatively assigned Sn propagation efficiencies across the Middle-East. The Sn Attenuation Tomography show moderately low Q values beneath the Turkish-Iranian Plateau (~250) and high Q values beneath the south Caspian sea (~400) and Arabian shield (~400). We also observe high Q values beneath the Zagros mountains (~450) that is consistent with the Arabian plate underthrusting beneath the Eurasia plate. The Sn Efficiency Tomography shows high attenuation within the Turkish-Iranian Plateau and low attenuation in the Arabian Plate and across the Caspian Sea. This is consistent with prior studies that suggest a hot and thin lithosphere beneath the Turkish-Iranian Plateau and it also suggests that intrinsic attenuation is the dominant component in Sn Q across the Turkish-Iranian Plateau. Due to the signal-to-noise criterion to select amplitudes and the efficiency criterion to select two-station and reverse-two-station paths for the inversion, the data are left-censored and the

  1. Correlative Tomography

    PubMed Central

    Burnett, T. L.; McDonald, S. A.; Gholinia, A.; Geurts, R.; Janus, M.; Slater, T.; Haigh, S. J.; Ornek, C.; Almuaili, F.; Engelberg, D. L.; Thompson, G. E.; Withers, P. J.

    2014-01-01

    Increasingly researchers are looking to bring together perspectives across multiple scales, or to combine insights from different techniques, for the same region of interest. To this end, correlative microscopy has already yielded substantial new insights in two dimensions (2D). Here we develop correlative tomography where the correlative task is somewhat more challenging because the volume of interest is typically hidden beneath the sample surface. We have threaded together x-ray computed tomography, serial section FIB-SEM tomography, electron backscatter diffraction and finally TEM elemental analysis all for the same 3D region. This has allowed observation of the competition between pitting corrosion and intergranular corrosion at multiple scales revealing the structural hierarchy, crystallography and chemistry of veiled corrosion pits in stainless steel. With automated correlative workflows and co-visualization of the multi-scale or multi-modal datasets the technique promises to provide insights across biological, geological and materials science that are impossible using either individual or multiple uncorrelated techniques. PMID:24736640

  2. Correlative Tomography

    NASA Astrophysics Data System (ADS)

    Burnett, T. L.; McDonald, S. A.; Gholinia, A.; Geurts, R.; Janus, M.; Slater, T.; Haigh, S. J.; Ornek, C.; Almuaili, F.; Engelberg, D. L.; Thompson, G. E.; Withers, P. J.

    2014-04-01

    Increasingly researchers are looking to bring together perspectives across multiple scales, or to combine insights from different techniques, for the same region of interest. To this end, correlative microscopy has already yielded substantial new insights in two dimensions (2D). Here we develop correlative tomography where the correlative task is somewhat more challenging because the volume of interest is typically hidden beneath the sample surface. We have threaded together x-ray computed tomography, serial section FIB-SEM tomography, electron backscatter diffraction and finally TEM elemental analysis all for the same 3D region. This has allowed observation of the competition between pitting corrosion and intergranular corrosion at multiple scales revealing the structural hierarchy, crystallography and chemistry of veiled corrosion pits in stainless steel. With automated correlative workflows and co-visualization of the multi-scale or multi-modal datasets the technique promises to provide insights across biological, geological and materials science that are impossible using either individual or multiple uncorrelated techniques.

  3. GPU-based 3D SAFT reconstruction including attenuation correction

    NASA Astrophysics Data System (ADS)

    Kretzek, E.; Hopp, T.; Ruiter, N. V.

    2015-03-01

    3D Ultrasound Computer Tomography (3D USCT) promises reproducible high-resolution images for early detection of breast tumors. The KIT prototype provides three different modalities: reflectivity, speed of sound, and attenuation. The reflectivity images are reconstructed using a Synthetic Aperture Focusing Technique (SAFT) algorithm. For high-resolution re ectivity images, with spatially homogeneous reflectivity, attenuation correction is necessary. In this paper we present a GPU accelerated attenuation correction for 3D USCT and evaluate the method by means of image quality metrics; i.e. absolute error, contrast and spatially homogeneous reflectivity. A threshold for attenuation correction was introduced to preserve a high contrast. Simulated and in-vivo data were used for analysis of the image quality. Attenuation correction increases the image quality by improving spatially homogeneous reflectivity by 25 %. This leads to a factor 2.8 higher contrast for in-vivo data.

  4. Quantitative evaluation of polymer gel dosimeters by broadband ultrasound attenuation

    NASA Astrophysics Data System (ADS)

    Khoei, S.; Trapp, J. V.; Langton, C. M.

    2013-06-01

    Ultrasound has been examined previously as an alternative readout method for irradiated polymer gel dosimeters, with authors reporting varying dose response to ultrasound transmission measurements. In this current work we extend previous work to measure the broadband ultrasound attenuation (BUA) response of irradiated PAGAT gel dosimeters, using a novel ultrasound computed tomography system.

  5. Variable laser attenuator

    DOEpatents

    Foltyn, S.R.

    1987-05-29

    The disclosure relates to low loss, high power variable attenuators comprising one or more transmissive and/or reflective multilayer dielectric filters. The attenuator is particularly suitable to use with unpolarized lasers such as excimer lasers. Beam attenuation is a function of beam polarization and the angle of incidence between the beam and the filter and is controlled by adjusting the angle of incidence the beam makes to the filter or filters. Filters are selected in accordance with beam wavelength. 9 figs.

  6. Variable laser attenuator

    DOEpatents

    Foltyn, Stephen R.

    1988-01-01

    The disclosure relates to low loss, high power variable attenuators comprng one or more transmissive and/or reflective multilayer dielectric filters. The attenuator is particularly suitable to use with unpolarized lasers such as excimer lasers. Beam attenuation is a function of beam polarization and the angle of incidence between the beam and the filter and is controlled by adjusting the angle of incidence the beam makes to the filter or filters. Filters are selected in accordance with beam wavelength.

  7. Optical Coherence Tomography

    MedlinePlus

    ... Cardiac Magnetic Resonance Imaging (MRI and MRA) Computed Tomography (CT) Scan Diagnostic Tests and Procedures Echocardiography Electrocardiogram ... Ultrasound Nuclear Stress Test Nuclear Ventriculography Positron Emission Tomography (PET) Stress ... Optical Coherence Tomography | ...

  8. Improved precision-guaranteed quantum tomography

    NASA Astrophysics Data System (ADS)

    Sugiyama, Takanori

    Quantum tomography is one of the standard tool in current quantum information experiments for verifying that a state/process/measurement prepared in the lab is close to an ideal target. Precision-guaranteed quantum tomography (Sugiyama, Turner, Murao, PRL 111, 160406 2013) gives rigorous error bars on a result estimated from arbitrary finite data sets from any given informationally complete tomography experiments. The rigorous error bars were derived with a real-valued concentration inequality called Hoeffding's inequality. In this talk, with a vector-valued concentration inequality, we provide an improved version of the error bars of precision-guaranteed quantum tomography. We examine the new error bars for specific cases of multi-qubit systems and numerically show that the degree of improvement becomes large as the dimension of the system increases. Supported by JSPS Research Fellowships for Young Scientists H27-276 and JSPS Postdoctoral Fellowships for Research Abroad H25-32.

  9. Multicomponent seismic noise attenuation with multivariate order statistic filters

    NASA Astrophysics Data System (ADS)

    Wang, Chao; Wang, Yun; Wang, Xiaokai; Xun, Chao

    2016-10-01

    The vector relationship between multicomponent seismic data is highly important for multicomponent processing and interpretation, but this vector relationship could be damaged when each component is processed individually. To overcome the drawback of standard component-by-component filtering, multivariate order statistic filters are introduced and extended to attenuate the noise of multicomponent seismic data by treating such dataset as a vector wavefield rather than a set of scalar fields. According to the characteristics of seismic signals, we implement this type of multivariate filtering along local events. First, the optimal local events are recognized according to the similarity between the vector signals which are windowed from neighbouring seismic traces with a sliding time window along each trial trajectory. An efficient strategy is used to reduce the computational cost of similarity measurement for vector signals. Next, one vector sample each from the neighbouring traces are extracted along the optimal local event as the input data for a multivariate filter. Different multivariate filters are optimal for different noise. The multichannel modified trimmed mean (MTM) filter, as one of the multivariate order statistic filters, is applied to synthetic and field multicomponent seismic data to test its performance for attenuating white Gaussian noise. The results indicate that the multichannel MTM filter can attenuate noise while preserving the relative amplitude information of multicomponent seismic data more effectively than a single-channel filter.

  10. Quantum tomography with wavelet transform in Banach space on homogeneous space

    NASA Astrophysics Data System (ADS)

    Mirzaee, M.; Rezaei, M.; Jafarizadeh, M. A.

    2007-11-01

    In this study the intimate connection is established between the Banach space wavelet reconstruction method on homogeneous spaces with both singular and nonsingular vacuum vectors, and some of the well known quantum tomographies, such as: Moyal-representation for a spin, discrete phase space tomography, tomography of a free particle, Homodyne tomography, phase space tomography and SU(1,1) tomography. And both the atomic decomposition and the Banach frame nature of these quantum tomographic examples are also revealed in details. Finally the connection between the wavelet formalism on Banach space and Q-function is discussed.

  11. Quantitative Three-Dimensional Imaging of Lipid, Protein, and Water Contents via X-Ray Phase-Contrast Tomography

    PubMed Central

    Willner, Marian; Viermetz, Manuel; Marschner, Mathias; Scherer, Kai; Braun, Christian; Fingerle, Alexander; Noël, Peter; Rummeny, Ernst; Pfeiffer, Franz; Herzen, Julia

    2016-01-01

    X-ray phase-contrast computed tomography is an emerging imaging technology with powerful capabilities for three-dimensional (3D) visualization of weakly absorbing objects such as biological soft tissues. This technique is an extension of existing X-ray applications because conventional attenuation-contrast images are simultaneously acquired. The complementary information provided by both the contrast modalities suggests that enhanced material characterization is possible when performing combined data analysis. In this study, we describe how protein, lipid, and water concentrations in each 3D voxel can be quantified by vector decomposition. Experimental results of dairy products, porcine fat and rind, and different human soft tissue types are presented. The results demonstrate the potential of phase-contrast imaging as a new analysis tool. The 3D representations of protein, lipid, and water contents open up new opportunities in the fields of biology, medicine, and food science. PMID:27003308

  12. Is there seismic attenuation in the mantle?

    NASA Astrophysics Data System (ADS)

    Ricard, Y.; Durand, S.; Montagner, J.-P.; Chambat, F.

    2014-02-01

    The small scale heterogeneity of the mantle is mostly due to the mixing of petrological heterogeneities by a smooth but chaotic convection and should consist in a laminated structure (marble cake) with a power spectrum S(k) varying as 1/k, where k is the wavenumber of the anomalies. This distribution of heterogeneities during convective stirring with negligible diffusion, called Batchelor regime is documented by fluid dynamic experiments and corresponds to what can be inferred from geochemistry and seismic tomography. This laminated structure imposes density, seismic velocity and potentially, anisotropic heterogeneities with similar 1/k spectra. A seismic wave of wavenumber k0 crossing such a medium is partly reflected by the heterogeneities and we show that the scattered energy is proportional to k0S(2k0). The reduction of energy for the propagating wave appears therefore equivalent to a quality factor 1/Q∝k0S(2k0). With the specific 1/k spectrum of the mantle, the resulting apparent attenuation should therefore be frequency independent. We show that the total contribution of 6-9% RMS density, velocity and anisotropy would explain the observed S and P attenuation of the mantle. Although these values are large, they are not unreasonable and we discuss how they depend on the range of frequencies over which the attenuation is explained. If such a level of heterogeneity were present, most of the attenuation of the Earth would be due to small scale scattering by laminations, not by intrinsic dissipation. Intrinsic dissipation must certainly exist but might correspond to a larger, yet unobserved Q. This provocative result would explain the very weak frequency dependence of the attenuation, and the fact that bulk attenuation seems negligible, two observations that have been difficult to explain for 50 years.

  13. Bubbles attenuate elastic waves at seismic frequencies

    NASA Astrophysics Data System (ADS)

    Tisato, Nicola; Quintal, Beatriz; Chapman, Samuel; Podladchikov, Yury; Burg, Jean-Pierre

    2016-04-01

    The vertical migration of multiphase fluids in the crust can cause hazardous events such as eruptions, explosions, pollution and earthquakes. Although seismic tomography could potentially provide a detailed image of such fluid-saturated regions, the interpretation of the tomographic signals is often controversial and fails in providing a conclusive map of the subsurface saturation. Seismic tomography should be improved considering seismic wave attenuation (1/Q) and the dispersive elastic moduli which allow accounting for the energy lost by the propagating elastic wave. In particular, in saturated media a significant portion of the energy carried by the propagating wave is dissipated by the wave-induced-fluid-flow and the wave-induced-gas-exsolution-dissolution (WIGED) mechanisms. The WIGED mechanism describes how a propagating wave modifies the thermodynamic equillibrium between different fluid phases causing the exsolution and the dissolution of the gas in the liquid, which in turn causes a significant frequency dependent 1/Q and moduli dispersion. The WIGED theory was initially postulated for bubbly magmas but only recently was extended to bubbly water and experimentally demonstrated. Here we report these theory and laboratory experiments. Specifically, we present i) attenuation measurements performed by means of the Broad Band Attenuation Vessel on porous media saturated with water and different gases, and ii) numerical experiments validating the laboratory observations. Finally, we will extend the theory to fluids and to pressure-temperature conditions which are typical of phreatomagmatic and hydrocarbon domains and we will compare the propagation of seismic waves in bubble-free and bubble-bearing subsurface domains. With the present contribution we extend the knowledge about attenuation in rocks which are saturated with multiphase fluid demonstrating that the WIGED mechanism could be extremely important to image subsurface gas plumes.

  14. Rotations with Rodrigues' Vector

    ERIC Educational Resources Information Center

    Pina, E.

    2011-01-01

    The rotational dynamics was studied from the point of view of Rodrigues' vector. This vector is defined here by its connection with other forms of parametrization of the rotation matrix. The rotation matrix was expressed in terms of this vector. The angular velocity was computed using the components of Rodrigues' vector as coordinates. It appears…

  15. APPLICATION OF COMPUTER AIDED TOMOGRAPHY (CAT) TO THE STUDY OF MARINE BENTIC COMMUNITIES

    EPA Science Inventory

    Sediment cores were imaged using a Computer-Aided Tomography (CT) scanner at Massachusetts General Hospital, Boston, Massachusetts, United States. Procedures were developed, using the attenuation of X-rays, to differentiate between sediment and the water contained in macrobenthic...

  16. Landing gear noise attenuation

    NASA Technical Reports Server (NTRS)

    Moe, Jeffrey W. (Inventor); Whitmire, Julia (Inventor); Kwan, Hwa-Wan (Inventor); Abeysinghe, Amal (Inventor)

    2011-01-01

    A landing gear noise attenuator mitigates noise generated by airframe deployable landing gear. The noise attenuator can have a first position when the landing gear is in its deployed or down position, and a second position when the landing gear is in its up or stowed position. The noise attenuator may be an inflatable fairing that does not compromise limited space constraints associated with landing gear retraction and stowage. A truck fairing mounted under a truck beam can have a compliant edge to allow for non-destructive impingement of a deflected fire during certain conditions.

  17. RADIO FREQUENCY ATTENUATOR

    DOEpatents

    Giordano, S.

    1963-11-12

    A high peak power level r-f attenuator that is readily and easily insertable along a coaxial cable having an inner conductor and an outer annular conductor without breaking the ends thereof is presented. Spaced first and second flares in the outer conductor face each other with a slidable cylindrical outer conductor portion therebetween. Dielectric means, such as water, contact the cable between the flares to attenuate the radio-frequency energy received thereby. The cylindrical outer conductor portion is slidable to adjust the voltage standing wave ratio to a low level, and one of the flares is slidable to adjust the attenuation level. An integral dielectric container is also provided. (AFC)

  18. Pharyngitis of infectious mononucleosis: computed tomography findings.

    PubMed

    Kutuya, Naoki; Kurosaki, Yoshihisa; Suzuki, Kazuhiro; Takata, Koremochi; Shiraihshi, Akihiko

    2008-05-01

    Two women presented with sore throat and fever. Their symptoms were not alleviated by antibiotics. Cervical computed tomography (CT) with contrast enhancement demonstrated enlargement of predominant posterior cervical lymph nodes and streaky heterogeneous tonsils with interspersed low attenuation. They were diagnosed as having infectious mononucleosis by their laboratory data. Thus, when radiologists encounter these CT findings of pharyngitis that is not alleviated by antibiotic therapy, infectious mononucleosis should be considered in the differential diagnosis.

  19. Analytical inversion formula for uniformly attenuated fan-beam projections

    SciTech Connect

    Weng, Y.; Zeng, G.L.; Gullberg, G.T.

    1997-04-01

    In deriving algorithms to reconstruct single photon emission computed tomography (SPECT) projection data, it is important that the algorithm compensates for photon attenuation in order to obtain quantitative reconstruction results. A convolution backprojection algorithm was derived by Tretiak and Metz to reconstruct two-dimensional (2-D) transaxial slices from uniformly attenuated parallel-beam projections. Using transformation of coordinates, this algorithm can be modified to obtain a formulation useful to reconstruct uniformly attenuated fan-beam projections. Unlike that for parallel-beam projections, this formulation does not produce a filtered backprojection reconstruction algorithm but instead has a formulation that is an inverse integral operator with a spatially varying kernel. This algorithm thus requires more computation time than does the filtered backprojection reconstruction algorithm for the uniformly attenuated parallel-beam case. However, the fan-beam reconstructions demonstrate the same image quality as that of parallel-beam reconstructions.

  20. EEG, transmission computed tomography, and positron emission tomography with fluorodeoxyglucose /sup 18/F. Their use in adults with gliomas

    SciTech Connect

    Newmark, M.E.; Theodore, W.H.; Sato, S.; De La Paz, R.; Patronas, N.; Brooks, R.; Jabbari, B.; Di Chiro, G.

    1983-10-01

    We evaluated the relationship between findings from EEG, transmission computed tomography (CT), and positron emission tomography in 23 adults with gliomas. The cortical metabolic rate was suppressed in patients with and without focal slowing. Focal delta activity was not related to involvement of gray or white matter. Rhythmic delta activity and focal attenuation of background amplitude on EEG, however, were correlated with involvement of the thalamus.

  1. Towards Dynamic Contrast Specific Ultrasound Tomography

    PubMed Central

    Demi, Libertario; Van Sloun, Ruud J. G.; Wijkstra, Hessel; Mischi, Massimo

    2016-01-01

    We report on the first study demonstrating the ability of a recently-developed, contrast-enhanced, ultrasound imaging method, referred to as cumulative phase delay imaging (CPDI), to image and quantify ultrasound contrast agent (UCA) kinetics. Unlike standard ultrasound tomography, which exploits changes in speed of sound and attenuation, CPDI is based on a marker specific to UCAs, thus enabling dynamic contrast-specific ultrasound tomography (DCS-UST). For breast imaging, DCS-UST will lead to a more practical, faster, and less operator-dependent imaging procedure compared to standard echo-contrast, while preserving accurate imaging of contrast kinetics. Moreover, a linear relation between CPD values and ultrasound second-harmonic intensity was measured (coefficient of determination = 0.87). DCS-UST can find clinical applications as a diagnostic method for breast cancer localization, adding important features to multi-parametric ultrasound tomography of the breast. PMID:27703251

  2. Towards Dynamic Contrast Specific Ultrasound Tomography

    NASA Astrophysics Data System (ADS)

    Demi, Libertario; van Sloun, Ruud J. G.; Wijkstra, Hessel; Mischi, Massimo

    2016-10-01

    We report on the first study demonstrating the ability of a recently-developed, contrast-enhanced, ultrasound imaging method, referred to as cumulative phase delay imaging (CPDI), to image and quantify ultrasound contrast agent (UCA) kinetics. Unlike standard ultrasound tomography, which exploits changes in speed of sound and attenuation, CPDI is based on a marker specific to UCAs, thus enabling dynamic contrast-specific ultrasound tomography (DCS-UST). For breast imaging, DCS-UST will lead to a more practical, faster, and less operator-dependent imaging procedure compared to standard echo-contrast, while preserving accurate imaging of contrast kinetics. Moreover, a linear relation between CPD values and ultrasound second-harmonic intensity was measured (coefficient of determination = 0.87). DCS-UST can find clinical applications as a diagnostic method for breast cancer localization, adding important features to multi-parametric ultrasound tomography of the breast.

  3. Photoacoustic Tomography

    NASA Astrophysics Data System (ADS)

    Wang, Lihong V.

    Photoacoustic tomography (PAT) refers to imaging that is based on the photoacoustic effect. Although the photoacoustic effect as a physical phenomenon was first reported on by Alexander Graham Bell in 1880 [1], PAT as an imaging technology was developed only after the advent of ultrasonic transducers, computers, and lasers [2-31]. A review on biomedical photoacoustics is available [32]. The motivation for PAT is to combine optical-absorption contrast with ultrasonic spatial resolution for deep imaging in the optical quasi-diffusive or diffusive regime. In PAT, the tissue is irradiated by usually a short-pulsed laser beam to achieve a thermal and acoustic impulse response (Fig. 19.1). Locally absorbed light is converted into heat, which is further converted to a pressure rise via thermo-elastic expansion. The initial pressure rise - determined by the local optical absorption coefficient (μ â ), fluence (ψ) and other thermal and mechanical properties - propagates as an ultrasonic wave, which is referred to as a photoacoustic wave.

  4. Determination of acoustic attenuation in the Hudson River Estuary by means of ship noise observations.

    PubMed

    Roh, Heui-Seol; Sutin, Alexander; Bunin, Barry

    2008-06-01

    Analysis of sound propagation in a complex urban estuary has application to underwater threat detection systems, underwater communication, and acoustic tomography. One of the most important acoustic parameters, sound attenuation, was analyzed in the Hudson River near Manhattan using measurements of acoustic noise generated by passing ships and recorded by a fixed hydrophone. Analysis of the ship noise level for varying distances allowed estimation of the sound attenuation in the frequency band of 10-80 kHz. The effective attenuation coefficient representing the attenuation loss above cylindrical spreading loss had only slight frequency dependence and can be estimated by the frequency independent value of 0.058 dBm.

  5. Broadband Lg Attenuation Modeling in the Middle East

    SciTech Connect

    Pasyanos, M E; Matzel, E M; Walter, W R; Rodgers, A J

    2008-08-21

    We present a broadband tomographic model of Lg attenuation in the Middle East derived from source- and site-corrected amplitudes. Absolute amplitude measurements are made on hand-selected and carefully windowed seismograms for tens of stations and thousands of crustal earthquakes resulting in excellent coverage of the region. A conjugate gradient method is used to tomographically invert the amplitude dataset of over 8000 paths over a 45{sup o} x 40{sup o} region of the Middle East. We solve for Q variation, as well as site and source terms, for a wide range of frequencies ranging from 0.5-10 Hz. We have modified the standard attenuation tomography technique to more explicitly define the earthquake source expression in terms of the seismic moment. This facilitates the use of the model to predict the expected amplitudes of new events, an important consideration for earthquake hazard or explosion monitoring applications. The attenuation results have a strong correlation to tectonics. Shields have low attenuation, while tectonic regions have high attenuation, with the highest attenuation at 1 Hz is found in eastern Turkey. The results also compare favorably to other studies in the region made using Lg propagation efficiency, Lg/Pg amplitude ratios and two-station methods. We tomographically invert the amplitude measurements for each frequency independently. In doing so, it appears the frequency-dependence of attenuation is not compatible with the power law representation of Q(f), an assumption that is often made.

  6. Using the STOMP (Seismic TOMography Program) Program for tomography with strong ray bending

    SciTech Connect

    Beatty, J.A.; Berryman, J.G.

    1987-08-31

    Accurate tomographic reconstructions of sound wave speed and attenuation are more difficult to obtain than are the corresponding reconstructions for x-rays or high frequency electromagnetic probes. The source of the difficulty is the common occurrence of large contrasts in acoustic or seismic wave speeds, leading to refraction and ray-bending effects. A new algorithm based on Fermat's principle has been developed to treat these problems. A description of the code STOMP (for Seismic TOMography Program) implementing the new algorithm is presented here together with a brief users manual for applications to borehole-to-borehole tomography. 3 refs., 3 figs.

  7. 3D reconstruction of tensors and vectors

    SciTech Connect

    Defrise, Michel; Gullberg, Grant T.

    2005-02-17

    Here we have developed formulations for the reconstruction of 3D tensor fields from planar (Radon) and line-integral (X-ray) projections of 3D vector and tensor fields. Much of the motivation for this work is the potential application of MRI to perform diffusion tensor tomography. The goal is to develop a theory for the reconstruction of both Radon planar and X-ray or line-integral projections because of the flexibility of MRI to obtain both of these type of projections in 3D. The development presented here for the linear tensor tomography problem provides insight into the structure of the nonlinear MRI diffusion tensor inverse problem. A particular application of tensor imaging in MRI is the potential application of cardiac diffusion tensor tomography for determining in vivo cardiac fiber structure. One difficulty in the cardiac application is the motion of the heart. This presents a need for developing future theory for tensor tomography in a motion field. This means developing a better understanding of the MRI signal for diffusion processes in a deforming media. The techniques developed may allow the application of MRI tensor tomography for the study of structure of fiber tracts in the brain, atherosclerotic plaque, and spine in addition to fiber structure in the heart. However, the relations presented are also applicable to other fields in medical imaging such as diffraction tomography using ultrasound. The mathematics presented can also be extended to exponential Radon transform of tensor fields and to other geometric acquisitions such as cone beam tomography of tensor fields.

  8. Computed tomography on small explosive parts

    SciTech Connect

    Ryon, R.W.

    1994-05-01

    We have investigated three small explosive parts for the Pantex Plant in Amarillo, Texas using computed tomography (CT). A medium resolution, fan beam system was used to test imaging capabilities for small holes drilled into one of the parts, and to identify any inhomogeneities, cracks, voids, and inclusions if present in the other two parts. This system provides volumetric imaging. Its information is qualitative in that is allows us to see interior features but it cannot provide quantitative attenuation data. A second part of the investigation was to perform effective atomic number computed tomography on the parts using energy dispersive spectroscopy methods. We wanted to experimentally identify the {open_quotes}average{close_quotes} chemical composition of the materials in the explosive and its shell and to detect any possible inhomogeneities in composition. A single beam, nuclear spectroscopy based system was used for this work. The radiation source was a silver anode x-ray tube. By measuring x-ray attenuation at specific energies (characteristic lines and narrow bands of continuum) we are able to quantitatively determine linear attenuation coefficients. By using ratios of such measurements, density cancels out and we effectively have ratios of mass attenuation coefficients. Through a look-up scheme of mass attenuation coefficients for different elements, we can determine the weighted average chemical composition, as averaged by x-ray attenuation. We call this averaged composition the effective atomic number ({open_quotes}Z{sub eff}{close_quotes}). We thereby obtain cross sectional images of a parameter related to the averaged chemistry of the object. Such images and the underlying data can reveal, for instance, segregation of explosive and binder.

  9. Neutron tomography developments and applications.

    PubMed

    Richards, W J; Gibbons, M R; Shields, K C

    2004-10-01

    Neutron radiography has been in use as a nondestructive testing technique for the past 50 years. The neutrons' unique ability to image certain elements and isotopes that are either completely undetectable or poorly detected by other NDI methods makes neutron radiography an important tool for the NDI community. Neutron radiography like other imaging techniques takes a number of different forms (i.e., film, radioscopic, transfer methods, tomography, etc.) This paper will describe the neutron tomography system developed at the University of California, Davis McClellan Nuclear Radiation Center (UC Davis/MNRC), and the applications for both research and commercial uses. The neutron radiography system at the UC Davis/MNRC has been under development for 4 years. The initial system was developed to find very low concentrations of hydrogen (i.e., <200 ppm). In order to achieve these low detection levels, it was necessary to perform both pre- and post-processing of the tomographs. The pre-processing steps include corrections for spatial resolution and random noise effects. Images are corrected for systematic noise errors and beam hardening. From these data the attenuation coefficient is calculated. The post-processing steps include alignment of the collected images, determining the center of mass, and, finally, using the filtered back-projection routine from the Donner Algorithms Library to obtain the final images. Since its initial development, the tomography system has been used very successfully to find low levels of hydrogen in a metal matrix. Further uses of the system have been to verify the exact placement, in three dimensions, of "O-rings" in large metal valve bodies, and to map the location and extent of veins in porous and high-density rocks of various different kinds. These examples show that neutron tomography is becoming a needed inspection technique for the 21st century. PMID:15246398

  10. Design of a multimodality breast-like phantom for combined diffuse optical tomography and ultrasound tomography (DOT-UST)

    NASA Astrophysics Data System (ADS)

    Ghijsen, Michael; Unlu, Burcin; Nalcioglu, Orhan; Gulsen, Gultekin

    2010-02-01

    The initial steps in fabricating a multimodality imaging phantom for combined diffuse optical tomography and ultrasound tomography (DOT-UST) are completed. Phantoms are intended to mimic the optical and acoustic properties of breast tissue for near infrared light and ultrasound in the vicinity of 2 MHz. So far, a prototype ultrasound tomography system has been designed and the acoustic attenuation coefficient of glass beads has been characterized. Furthermore, 8 cm diameter homogeneous cylindrical phantoms have been successfully constructed and it has been shown that an inclusion with object to background contrast of three can be comfortably detected with the prototype system.

  11. Planetary Ices Attenuation Properties

    NASA Astrophysics Data System (ADS)

    McCarthy, Christine; Castillo-Rogez, Julie C.

    In this chapter, we review the topic of energy dissipation in the context of icy satellites experiencing tidal forcing. We describe the physics of mechanical dissipation, also known as attenuation, in polycrystalline ice and discuss the history of laboratory methods used to measure and understand it. Because many factors - such as microstructure, composition and defect state - can influence rheological behavior, we review what is known about the mechanisms responsible for attenuation in ice and what can be inferred from the properties of rocks, metals and ceramics. Since attenuation measured in the laboratory must be carefully scaled to geologic time and to planetary conditions in order to provide realistic extrapolation, we discuss various mechanical models that have been used, with varying degrees of success, to describe attenuation as a function of forcing frequency and temperature. We review the literature in which these models have been used to describe dissipation in the moons of Jupiter and Saturn. Finally, we address gaps in our present knowledge of planetary ice attenuation and provide suggestions for future inquiry.

  12. Understanding Singular Vectors

    ERIC Educational Resources Information Center

    James, David; Botteron, Cynthia

    2013-01-01

    matrix yields a surprisingly simple, heuristical approximation to its singular vectors. There are correspondingly good approximations to the singular values. Such rules of thumb provide an intuitive interpretation of the singular vectors that helps explain why the SVD is so…

  13. Assessment of attenuated Salmonella vaccine strains in controlling experimental Salmonella Typhimurium infection in chickens.

    PubMed

    Pei, Yanlong; Parreira, Valeria R; Roland, Kenneth L; Curtiss, Roy; Prescott, John F

    2014-01-01

    Salmonella hold considerable promise as vaccine delivery vectors for heterologous antigens in chickens. Such vaccines have the potential additional benefit of also controlling Salmonella infection in immunized birds. As a way of selecting attenuated strains with optimal immunogenic potential as antigen delivery vectors, this study screened 20 novel Salmonella Typhimurium vaccine strains, differing in mutations associated with delayed antigen synthesis and delayed attenuation, for their efficacy in controlling colonization by virulent Salmonella Typhimurium, as well as for their persistence in the intestine and the spleen. Marked differences were observed between strains in these characteristics, which provide the basis for selection for further study as vaccine vectors.

  14. Rhotrix Vector Spaces

    ERIC Educational Resources Information Center

    Aminu, Abdulhadi

    2010-01-01

    By rhotrix we understand an object that lies in some way between (n x n)-dimensional matrices and (2n - 1) x (2n - 1)-dimensional matrices. Representation of vectors in rhotrices is different from the representation of vectors in matrices. A number of vector spaces in matrices and their properties are known. On the other hand, little seems to be…

  15. Vortex attenuation flight experiments

    NASA Technical Reports Server (NTRS)

    Barber, M. R.; Hastings, E. C., Jr.; Champine, R. A.; Tymczyszyn, J. J.

    1977-01-01

    Flight tests evaluating the effects of altered span loading, turbulence ingestion, combinations of mass and turbulence ingestion, and combinations of altered span loading turbulance ingestion on trailed wake vortex attenuation were conducted. Span loadings were altered in flight by varying the deflections of the inboard and outboard flaps on a B-747 aircraft. Turbulence ingestion was achieved in flight by mounting splines on a C-54G aircraft. Mass and turbulence ingestion was achieved in flight by varying the thrust on the B-747 aircraft. Combinations of altered span loading and turbulence ingestion were achieved in flight by installing a spoiler on a CV-990 aircraft and by deflecting the existing spoilers on a B-747 aircraft. The characteristics of the attenuated and unattenuated vortexes were determined by probing them with smaller aircraft. Acceptable separation distances for encounters with the attenuated and unattenuated vortexes are presented.

  16. Radiofrequency attenuator and method

    SciTech Connect

    Warner, Benjamin P.; McCleskey, T. Mark; Burrell, Anthony K.; Agrawal, Anoop; Hall, Simon B.

    2009-01-20

    Radiofrequency attenuator and method. The attenuator includes a pair of transparent windows. A chamber between the windows is filled with molten salt. Preferred molten salts include quarternary ammonium cations and fluorine-containing anions such as tetrafluoroborate (BF.sub.4.sup.-), hexafluorophosphate (PF.sub.6.sup.-), hexafluoroarsenate (AsF.sub.6.sup.-), trifluoromethylsulfonate (CF.sub.3SO.sub.3.sup.-), bis(trifluoromethylsulfonyl)imide ((CF.sub.3SO.sub.2).sub.2N.sup.-), bis(perfluoroethylsulfonyl)imide ((CF.sub.3CF.sub.2SO.sub.2).sub.2N.sup.-) and tris(trifluoromethylsulfonyl)methide ((CF.sub.3SO.sub.2).sub.3C.sup.-). Radicals or radical cations may be added to or electrochemically generated in the molten salt to enhance the RF attenuation.

  17. Radiofrequency attenuator and method

    DOEpatents

    Warner, Benjamin P.; McCleskey, T. Mark; Burrell, Anthony K.; Agrawal, Anoop; Hall, Simon B.

    2009-11-10

    Radiofrequency attenuator and method. The attenuator includes a pair of transparent windows. A chamber between the windows is filled with molten salt. Preferred molten salts include quarternary ammonium cations and fluorine-containing anions such as tetrafluoroborate (BF.sub.4.sup.-), hexafluorophosphate (PF.sub.6.sup.-), hexafluoroarsenate (AsF.sub.6.sup.-), trifluoromethylsulfonate (CF.sub.3SO.sub.3.sup.-), bis(trifluoromethylsulfonyl)imide ((CF.sub.3SO.sub.2).sub.2N.sup.-), bis(perfluoroethylsulfonyl)imide ((CF.sub.3CF.sub.2SO.sub.2).sub.2N.sup.-) and tris(trifluoromethylsulfonyl)methide ((CF.sub.3SO.sub.2).sub.3 C.sup.-). Radicals or radical cations may be added to or electrochemically generated in the molten salt to enhance the RF attenuation.

  18. Tritium Attenuation by Distillation

    SciTech Connect

    Wittman, N.E.

    2001-07-31

    The objective of this study was to determine how a 100 Area distillation system could be used to reduce to a satisfactory low value the tritium content of the dilute moderator produced in the 100 Area stills, and whether such a tritium attenuator would have sufficient capacity to process all this material before it is sent to the 400 Area for reprocessing.

  19. Computed Tomography (CT) - Spine

    MedlinePlus

    ... News Physician Resources Professions Site Index A-Z Computed Tomography (CT) - Spine Computed tomography (CT) of the spine is a diagnostic imaging ... Spine? What is CT Scanning of the Spine? Computed tomography, more commonly known as a CT or CAT ...

  20. The uses of poxviruses as vectors.

    PubMed

    Vanderplasschen, A; Pastoret, P-P

    2003-12-01

    Poxviruses have played an amazing role in the development of virology, immunology and vaccinology. In 1796, deliberate inoculation of cowpox virus to humans was proved by Dr. Edward Jenner to protect against the antigenically related smallpox virus (variola). This discovery founded the science of immunology and eventually led to smallpox eradication from the earth in 1980 after a world wide vaccination campaign with vaccinia virus (another poxvirus). Paradoxically, despite the eradication of smallpox, there has been an explosion of interest in vaccinia virus in the eighties. This interest has stemmed in part from the application of molecular genetics to clone and express foreign genes from recombinant vaccinia virus. The use of these recombinant vaccinia viruses as efficacious in vitro expression system and live vaccine has raised concerns about their safety. The work of the scientific community of the last 20 years has contributed to improve drastically the safety of poxvirus derived vectors. Firstly, the safety of vaccinia virus has been enhanced by production of genetically attenuated strains. Secondly, alternative poxvirus vectors, such as avipoxviruses, were proved to be extremely safe and efficacious non-replicating vectors when used in non avian species. In the present chapter, the basic concepts of poxvirus biology required to assess the safety of a poxvirus derived vector are provided. The principal poxvirus vectors available to date are described in regards to their biosafety. PMID:14683453

  1. Mapping Pn amplitude spreading and attenuation in Asia

    SciTech Connect

    Yang, Xiaoning; Phillips, William S; Stead, Richard J

    2010-12-06

    Pn travels most of its path in the mantle lid. Mapping the lateral variation of Pn amplitude attenuation sheds light on material properties and dynamics of the uppermost region of the mantle. Pn amplitude variation depends on the wavefront geometric spreading as well as material attenuation. We investigated Pn geometric spreading, which is much more complex than a traditionally assumed power-law spreading model, using both synthetic and observed amplitude data collected in Asia. We derived a new Pn spreading model based on the formulation that was proposed previously to account for the spherical shape of the Earth (Yang et. al., BSSA, 2007). New parameters derived for the spreading model provide much better correction for Pn amplitudes in terms of residual behavior. Because we used observed Pn amplitudes to construct the model, the model incorporates not only the effect of the Earth's spherical shape, but also the effect of potential upper-mantle velocity gradients in the region. Using the new spreading model, we corrected Pn amplitudes measured at 1, 2, 4 and 6 Hz and conducted attenuation tomography. The resulting Pn attenuation model correlates well with the regional geology. We see high attenuation in regions such as northern Tibetan Plateau and the western Pacific subduction zone, and low attenuation for stable blocks such as Sichuan and Tarim basins.

  2. Investigation of the relationship between linear attenuation coefficients and CT Hounsfield units using radionuclides for SPECT.

    PubMed

    Brown, Saxby; Bailey, Dale L; Willowson, Kathy; Baldock, Clive

    2008-09-01

    This study has investigated the relationship between linear attenuation coefficients (mu) and Hounsfield units (HUs) for six materials covering the range of values found clinically. Narrow-beam mu values were measured by performing radionuclide transmission scans using (99m)Tc, (123)I, (131)I, (201)Tl and (111)In. The mu values were compared to published data. The relationships between mu and HU were determined. These relationships can be used to convert computed tomography (CT) images to mu-maps for single photon emission computed tomography (SPECT) attenuation correction. PMID:18662614

  3. Index Sets and Vectorization

    SciTech Connect

    Keasler, J A

    2012-03-27

    Vectorization is data parallelism (SIMD, SIMT, etc.) - extension of ISA enabling the same instruction to be performed on multiple data items simultaeously. Many/most CPUs support vectorization in some form. Vectorization is difficult to enable, but can yield large efficiency gains. Extra programmer effort is required because: (1) not all algorithms can be vectorized (regular algorithm structure and fine-grain parallelism must be used); (2) most CPUs have data alignment restrictions for load/store operations (obey or risk incorrect code); (3) special directives are often needed to enable vectorization; and (4) vector instructions are architecture-specific. Vectorization is the best way to optimize for power and performance due to reduced clock cycles. When data is organized properly, a vector load instruction (i.e. movaps) can replace 'normal' load instructions (i.e. movsd). Vector operations can potentially have a smaller footprint in the instruction cache when fewer instructions need to be executed. Hybrid index sets insulate users from architecture specific details. We have applied hybrid index sets to achieve optimal vectorization. We can extend this concept to handle other programming models.

  4. Neurovirulence and Immunogenicity of Attenuated Recombinant Vesicular Stomatitis Viruses in Nonhuman Primates

    PubMed Central

    Nasar, Farooq; Chong, Siew; Johnson, J. Erik; Coleman, John W.; Lee, Margaret; Witko, Susan E.; Kotash, Cheryl S.; Abdullah, Rashed; Megati, Shakuntala; Luckay, Amara; Nowak, Becky; Lackner, Andrew; Price, Roger E.; Little, Peter; Kalyan, Narender; Randolf, Valerie; Javadian, Ali; Zamb, Timothy J.; Parks, Christopher L.; Egan, Michael A.; Eldridge, John; Hendry, Michael; Udem, Stephen A.

    2014-01-01

    ABSTRACT In previous work, a prototypic recombinant vesicular stomatitis virus Indiana serotype (rVSIV) vector expressing simian immunodeficiency virus (SIV) gag and human immunodeficiency virus type 1 (HIV-1) env antigens protected nonhuman primates (NHPs) from disease following challenge with an HIV-1/SIV recombinant (SHIV). However, when tested in a stringent NHP neurovirulence (NV) model, this vector was not adequately attenuated for clinical evaluation. For the work described here, the prototypic rVSIV vector was attenuated by combining specific G protein truncations with either N gene translocations or mutations (M33A and M51A) that ablate expression of subgenic M polypeptides, by incorporation of temperature-sensitive mutations in the N and L genes, and by deletion of the VSIV G gene to generate a replicon that is dependent on trans expression of G protein for in vitro propagation. When evaluated in a series of NHP NV studies, these attenuated rVSIV variants caused no clinical disease and demonstrated a very significant reduction in neuropathology compared to wild-type VSIV and the prototypic rVSIV vaccine vector. In spite of greatly increased in vivo attenuation, some of the rVSIV vectors elicited cell-mediated immune responses that were similar in magnitude to those induced by the much more virulent prototypic vector. These data demonstrate novel approaches to the rational attenuation of VSIV NV while retaining vector immunogenicity and have led to identification of an rVSIV N4CT1gag1 vaccine vector that has now successfully completed phase I clinical evaluation. IMPORTANCE The work described in this article demonstrates a rational approach to the attenuation of vesicular stomatitis virus neurovirulence. The major attenuation strategy described here will be most likely applicable to other members of the Rhabdoviridae and possibly other families of nonsegmented negative-strand RNA viruses. These studies have also enabled the identification of an attenuated

  5. Retroviral vector production.

    PubMed

    Miller, A Dusty

    2014-01-01

    In this unit, the basic protocol generates stable cell lines that produce retroviral vectors that carry selectable markers. Also included are an alternate protocol that applies when the retroviral vector does not carry a selectable marker, and another alternate protocol for rapidly generating retroviral vector preparations by transient transfection. A support protocol describes construction of the retroviral vectors. The methods for generating virus from retroviral vector plasmids rely on the use of packaging cells that synthesize all of the retroviral proteins but do not produce replication-competent virus. Additional protocols detail plasmid transfection, virus titration, assay for replication-competent virus, and histochemical staining to detect transfer of a vector encoding alkaline phosphatase.

  6. Vectorization of a Treecode

    NASA Astrophysics Data System (ADS)

    Makino, Junichiro

    1990-03-01

    Vectorized algorithms for the force calculation and tree construction in the Barnes-Hut tree algorithm are described. The basic idea for the vectorization of the force calculation is to vectorize the tree traversal across particles, so that all particles in the system traverse the tree simultaneously. The tree construction algorithm also makes use of the fact that particles can be treated in parallel. Thus these algorithms take advantage of the internal parallelism in the N-body system and the tree algorithm most effectively. As a natural result, these algorithms can be used on a wide range of vector/parallel architectures, including current supercomputers and highly parallel architectures such as the Connection Machine. The vectorized code runs about five times faster than the non-vector code on a Cyber 205 for an N-body system with N = 8192.

  7. Support vector tracking.

    PubMed

    Avidan, Shai

    2004-08-01

    Support Vector Tracking (SVT) integrates the Support Vector Machine (SVM) classifier into an optic-flow-based tracker. Instead of minimizing an intensity difference function between successive frames, SVT maximizes the SVM classification score. To account for large motions between successive frames, we build pyramids from the support vectors and use a coarse-to-fine approach in the classification stage. We show results of using SVT for vehicle tracking in image sequences.

  8. Monitored natural attenuation.

    PubMed

    Jørgensen, Kirsten S; Salminen, Jani M; Björklöf, Katarina

    2010-01-01

    Monitored natural attenuation (MNA) is an in situ remediation technology that relies on naturally occurring and demonstrable processes in soil and groundwater which reduce the mass and concentration of the contaminants. Natural attenuation (NA) involves both aerobic and anaerobic degradation of the contaminants due to the fact that oxygen is used up near the core of the contaminant plume. The aerobic and anaerobic microbial processes can be assessed by microbial activity measurements and molecular biology methods in combination with chemical analyses. The sampling and knowledge on the site conditions are of major importance for the linkage of the results obtained to the conditions in situ. Rates obtained from activity measurements can, with certain limitations, be used in modeling of the fate of contaminants whereas most molecular methods mainly give qualitative information on the microbial community and gene abundances. However, molecular biology methods are fast and describe the in situ communities and avoid the biases inherent to activity assays requiring laboratory incubations.

  9. Fluid dynamic bowtie attenuators

    NASA Astrophysics Data System (ADS)

    Szczykutowicz, Timothy P.; Hermus, James

    2015-03-01

    Fluence field modulated CT allows for improvements in image quality and dose reduction. To date, only 1-D modulators have been proposed, the extension to 2-D modulation is difficult with solid-metal attenuation-based modulators. This work proposes to use liquids and gas to attenuate the x-ray beam which can be arrayed allowing for 2-D fluence modulation. The thickness of liquid and the pressure for a given path length of gas were determined that provided the same attenuation as 30 cm of soft tissue at 80, 100, 120, and 140 kV. Gaseous Xenon and liquid Iodine, Zinc Chloride, and Cerium Chloride were studied. Additionally, we performed some proof-of-concept experiments in which (1) a single cell of liquid was connected to a reservoir which allowed the liquid thickness to be modulated and (2) a 96 cell array was constructed in which the liquid thickness in each cell was adjusted manually. Liquid thickness varied as a function of kV and chemical composition, with Zinc Chloride allowing for the smallest thickness; 1.8, 2.25, 3, and 3.6 cm compensated for 30 cm of soft tissue at 80, 100, 120, and 140 kV respectively. The 96 cell Iodine attenuator allowed for a reduction in both dynamic range to the detector and scatter to primary ratio. Successful modulation of a single cell was performed at 0, 90, and 130 degrees using a simple piston/actuator. The thickness of liquids and the Xenon gas pressure seem logistically implementable within the constraints of CBCT and diagnostic CT systems.

  10. Vectorized Monte Carlo

    SciTech Connect

    Brown, F.B.

    1981-01-01

    Examination of the global algorithms and local kernels of conventional general-purpose Monte Carlo codes shows that multigroup Monte Carlo methods have sufficient structure to permit efficient vectorization. A structured multigroup Monte Carlo algorithm for vector computers is developed in which many particle events are treated at once on a cell-by-cell basis. Vectorization of kernels for tracking and variance reduction is described, and a new method for discrete sampling is developed to facilitate the vectorization of collision analysis. To demonstrate the potential of the new method, a vectorized Monte Carlo code for multigroup radiation transport analysis was developed. This code incorporates many features of conventional general-purpose production codes, including general geometry, splitting and Russian roulette, survival biasing, variance estimation via batching, a number of cutoffs, and generalized tallies of collision, tracklength, and surface crossing estimators with response functions. Predictions of vectorized performance characteristics for the CYBER-205 were made using emulated coding and a dynamic model of vector instruction timing. Computation rates were examined for a variety of test problems to determine sensitivities to batch size and vector lengths. Significant speedups are predicted for even a few hundred particles per batch, and asymptotic speedups by about 40 over equivalent Amdahl 470V/8 scalar codes arepredicted for a few thousand particles per batch. The principal conclusion is that vectorization of a general-purpose multigroup Monte Carlo code is well worth the significant effort required for stylized coding and major algorithmic changes.

  11. Quantitative computed tomography of the liver in juvenile green sea turtles (Chelonia mydas).

    PubMed

    Bonelli, Marília de Albuquerque; de Oliveira, Daniel Capucho; Costa, Lorena Adão Vescovi Séllos; Forattini, Jannine Garcia; Júnior, João Luiz Rossi; Leite, Flaviana Lima Guião; Costa, Fabiano Séllos

    2013-06-01

    Quantitative computed tomography (QCT) is a highly sensitive, applicable technique for determining the x-ray attenuation of organs. This technique reveals great precision in the detection of alterations in the x-ray attenuation of hepatic parenchyma, although the lack of studies establishing normal values limits its application in wild animals. The objective of this study was to establish mean hepatic attenuation values in four healthy juvenile sea turtles (Chelonia mydas) using QCT. Helical computed tomography scans were performed and regions of interest selected in the liver after multi-planar reconstruction images were obtained. The mean attenuation value for the hepatic parenchyma in these four turtles was 60.09 +/- 5.3 standard deviation Hounsfield units. Determining normal x-ray attenuation values of the liver increases knowledge of the computed tomographic anatomy of this species and may be useful in the investigation of hepatic diseases.

  12. Impact of MR based attenuation correction on neurological PET studies

    PubMed Central

    Su, Yi; Rubin, Brian B.; McConathy, Jonathan; Laforest, Richard; Qi, Jing; Sharma, Akash; Priatna, Agus; Benzinger, Tammie L.S.

    2016-01-01

    Hybrid positron emission tomography (PET) and magnetic resonance (MR) scanners have become a reality in recent years with the benefits of reduced radiation exposure, reduction of imaging time, and potential advantages in quantification. Appropriate attenuation correction remains a challenge. Biases in PET activity measurements were demonstrated using the current MR based attenuation correction technique. We aim to investigate the impact of using standard MRAC technique on the clinical and research utility of PET/MR hybrid scanner for amyloid imaging. Methods Florbetapir scans were obtained on 40 participants on a Biograph mMR hybrid scanner with simultaneous MR acquisition. PET images were reconstructed using both MR and CT derived attenuation map. Quantitative analysis was performed for both datasets to assess the impact of MR based attenuation correction to absolute PET activity measurements as well as target to reference ratio (SUVR). Clinical assessment was also performed by a nuclear medicine physician to determine amyloid status based on the criteria in the FDA prescribing information for florbetapir. Results MR based attenuation correction led to underestimation of PET activity for most part of the brain with a small overestimation for deep brain regions. There is also an overestimation of SUVR values with cerebellar reference. SUVR measurements obtained from the two attenuation correction methods were strongly correlated. Clinical assessment of amyloid status resulted in identical classification as positive or negative regardless of the attenuation correction methods. Conclusions MR based attenuation correction cause biases in quantitative measurements. The biases may be accounted for by a linear model, although the spatial variation cannot be easily modelled. The quantitative differences however did not affect clinical assessment as positive or negative. PMID:26823562

  13. Tomorrow's vector vaccines for small ruminants.

    PubMed

    Kyriakis, C S

    2015-12-14

    Inactivated and attenuated vaccines have contributed to the control or even the eradication of significant animal pathogens. However, these traditional vaccine technologies have limitations and disadvantages. Inactivated vaccines lack efficacy against certain pathogens, while attenuated vaccines are not always as safe. New technology vaccines, namely DNA and recombinant viral vector vaccines, are being developed and tested against pathogens of small ruminants. These vaccines induce both humoral and cellular immune responses, are safe to manufacture and use and can be utilized in strategies for differentiation of infected from vaccinated animals. Although there are more strict regulatory requirements for the safety standards of these vaccines, once a vaccine platform is evaluated and established, effective vaccines can be rapidly produced and deployed in the field to prevent spread of emerging pathogens. The present article offers an introduction to these next generation technologies and examples of vaccines that have been tested against important diseases of sheep and goats.

  14. Control algorithms for dynamic attenuators

    SciTech Connect

    Hsieh, Scott S.; Pelc, Norbert J.

    2014-06-15

    Purpose: The authors describe algorithms to control dynamic attenuators in CT and compare their performance using simulated scans. Dynamic attenuators are prepatient beam shaping filters that modulate the distribution of x-ray fluence incident on the patient on a view-by-view basis. These attenuators can reduce dose while improving key image quality metrics such as peak or mean variance. In each view, the attenuator presents several degrees of freedom which may be individually adjusted. The total number of degrees of freedom across all views is very large, making many optimization techniques impractical. The authors develop a theory for optimally controlling these attenuators. Special attention is paid to a theoretically perfect attenuator which controls the fluence for each ray individually, but the authors also investigate and compare three other, practical attenuator designs which have been previously proposed: the piecewise-linear attenuator, the translating attenuator, and the double wedge attenuator. Methods: The authors pose and solve the optimization problems of minimizing the mean and peak variance subject to a fixed dose limit. For a perfect attenuator and mean variance minimization, this problem can be solved in simple, closed form. For other attenuator designs, the problem can be decomposed into separate problems for each view to greatly reduce the computational complexity. Peak variance minimization can be approximately solved using iterated, weighted mean variance (WMV) minimization. Also, the authors develop heuristics for the perfect and piecewise-linear attenuators which do not requirea priori knowledge of the patient anatomy. The authors compare these control algorithms on different types of dynamic attenuators using simulated raw data from forward projected DICOM files of a thorax and an abdomen. Results: The translating and double wedge attenuators reduce dose by an average of 30% relative to current techniques (bowtie filter with tube current

  15. Turbocharging Quantum Tomography

    SciTech Connect

    Blume-Kohout, Robin J.; Gamble, John King; Nielsen, Erik; Maunz, Peter Lukas Wilhelm; Scholten, Travis L.; Rudinger, Kenneth Michael

    2015-01-01

    Quantum tomography is used to characterize quantum operations implemented in quantum information processing (QIP) hardware. Traditionally, state tomography has been used to characterize the quantum state prepared in an initialization procedure, while quantum process tomography is used to characterize dynamical operations on a QIP system. As such, tomography is critical to the development of QIP hardware (since it is necessary both for debugging and validating as-built devices, and its results are used to influence the next generation of devices). But tomography suffers from several critical drawbacks. In this report, we present new research that resolves several of these flaws. We describe a new form of tomography called gate set tomography (GST), which unifies state and process tomography, avoids prior methods critical reliance on precalibrated operations that are not generally available, and can achieve unprecedented accuracies. We report on theory and experimental development of adaptive tomography protocols that achieve far higher fidelity in state reconstruction than non-adaptive methods. Finally, we present a new theoretical and experimental analysis of process tomography on multispin systems, and demonstrate how to more effectively detect and characterize quantum noise using carefully tailored ensembles of input states.

  16. Ultrasonic attenuation in pearlitic steel.

    PubMed

    Du, Hualong; Turner, Joseph A

    2014-03-01

    Expressions for the attenuation coefficients of longitudinal and transverse ultrasonic waves are developed for steel with pearlitic microstructure. This type of lamellar duplex microstructure influences attenuation because of the lamellar spacing. In addition, longitudinal attenuation measurements were conducted using an unfocused transducer with 10 MHz central frequency on the cross section of a quenched railroad wheel sample. The dependence of longitudinal attenuation on the pearlite microstructure is observed from the changes of longitudinal attenuation from the quenched tread surface to deeper locations. The results show that the attenuation value is lowest and relatively constant within the quench depth, then increases linearly. The experimental results demonstrate a reasonable agreement with results from the theoretical model. Ultrasonic attenuation provides an important non-destructive method to evaluate duplex microstructure within grains which can be implemented for quality control in conjunction with other manufacturing processes.

  17. Vector processing unit

    SciTech Connect

    Garcia, L.C.; Tjon-Pian-Gi, D.C.; Tucker, S.G.; Zajac, M.W.

    1988-12-13

    This patent describes a data processing system comprising: memory means for storing instruction words of operands; a central processing unit (CPU) connected to the memory means for fetching and decoding instructions and controlling execution of instructions, including transfer of operands to and from the memory means, the control of execution of instructions is effected by a CPU clock and microprogram control means connected to the CPU clock for generating periodic execution control signals in synchronism with the CPU clock; vector processing means tightly coupled to the CPU for effecting data processing on vector data; and interconnection means, connecting the CPU and the vector processing means, including operand transfer lines for transfer of vector data between the CPU and the vector processing means, control lines, status lines for signalling conditions of the vector processor means to the CPU, and a vector timing signal line connected to one of the execution control signals from the microprogram control means, whereby the vector processing means receives periodic execution control signals at the clock rate and is synchronized with the CPU clock on a clock pulse by clock pulse basis during execution of instructions.

  18. Vector generator scan converter

    DOEpatents

    Moore, J.M.; Leighton, J.F.

    1988-02-05

    High printing speeds for graphics data are achieved with a laser printer by transmitting compressed graphics data from a main processor over an I/O channel to a vector generator scan converter which reconstructs a full graphics image for input to the laser printer through a raster data input port. The vector generator scan converter includes a microprocessor with associated microcode memory containing a microcode instruction set, a working memory for storing compressed data, vector generator hardware for drawing a full graphic image from vector parameters calculated by the microprocessor, image buffer memory for storing the reconstructed graphics image and an output scanner for reading the graphics image data and inputting the data to the printer. The vector generator scan converter eliminates the bottleneck created by the I/O channel for transmitting graphics data from the main processor to the laser printer, and increases printer speed up to thirty fold. 7 figs.

  19. Vector generator scan converter

    DOEpatents

    Moore, James M.; Leighton, James F.

    1990-01-01

    High printing speeds for graphics data are achieved with a laser printer by transmitting compressed graphics data from a main processor over an I/O (input/output) channel to a vector generator scan converter which reconstructs a full graphics image for input to the laser printer through a raster data input port. The vector generator scan converter includes a microprocessor with associated microcode memory containing a microcode instruction set, a working memory for storing compressed data, vector generator hardward for drawing a full graphic image from vector parameters calculated by the microprocessor, image buffer memory for storing the reconstructed graphics image and an output scanner for reading the graphics image data and inputting the data to the printer. The vector generator scan converter eliminates the bottleneck created by the I/O channel for transmitting graphics data from the main processor to the laser printer, and increases printer speed up to thirty fold.

  20. Vector theories in cosmology

    SciTech Connect

    Esposito-Farese, Gilles; Pitrou, Cyril; Uzan, Jean-Philippe

    2010-03-15

    This article provides a general study of the Hamiltonian stability and the hyperbolicity of vector field models involving both a general function of the Faraday tensor and its dual, f(F{sup 2},FF-tilde), as well as a Proca potential for the vector field, V(A{sup 2}). In particular it is demonstrated that theories involving only f(F{sup 2}) do not satisfy the hyperbolicity conditions. It is then shown that in this class of models, the cosmological dynamics always dilutes the vector field. In the case of a nonminimal coupling to gravity, it is established that theories involving Rf(A{sup 2}) or Rf(F{sup 2}) are generically pathologic. To finish, we exhibit a model where the vector field is not diluted during the cosmological evolution, because of a nonminimal vector field-curvature coupling which maintains second-order field equations. The relevance of such models for cosmology is discussed.

  1. Vector generator scan converter

    SciTech Connect

    Moore, J.M.; Leighton, J.F.

    1990-04-17

    This patent describes high printing speeds for graphics data that are achieved with a laser printer by transmitting compressed graphics data from a main processor over an I/O (input/output) channel to a vector generator scan converter which reconstructs a full graphics image for input to the laser printer through a raster data input port. The vector generator scan converter includes a microprocessor with associated microcode memory containing a microcode instruction set, a working memory for storing compressed data, vector generator hardware for drawing a full graphic image from vector parameters calculated by the microprocessor, image buffer memory for storing the reconstructed graphics image and an output scanner for reading the graphics image data and inputting the data to the printer. The vector generator scan converter eliminates the bottleneck created by the I/O channel for transmitting graphics data from the main processor to the laser printer, and increases printer speed up to thirty fold.

  2. Use of borehole radar tomography to monitor steam injection in fractured limestone

    USGS Publications Warehouse

    Gregoire, C.; Joesten, P.K.

    2006-01-01

    Borehole radar tomography was used as part of a pilot study to monitor steam-enhanced remediation of a fractured limestone contaminated with volatile organic compounds at the former Loring Air Force Base, Maine, USA. Radar tomography data were collected using 100-MHz electric-dipole antennae before and during steam injection to evaluate whether cross-hole radar methods could detect changes in medium properties resulting from the steam injection. Cross-hole levelrun profiles, in which transmitting and receiving antennae are positioned at a common depth, were made before and after the collection of each full tomography data set to check the stability of the radar instruments. Before tomographic inversion, the levelrun profiles were used to calibrate the radar tomography data to compensate for changes in traveltime and antenna power caused by instrument drift. Observed changes in cross-hole radar traveltime and attenuation before and during steam injection were small. Slowness- and attenuation-difference tomograms indicate small increases in radar slowness and attenuation at depths greater than about 22 m below the surface, consistent with increases in water temperature observed in the boreholes used for the tomography. Based on theoretical modelling results, increases in slowness and attenuation are interpreted as delineating zones where steam injection heating increased the electrical conductivity of the limestone matrix and fluid. The results of this study show the potential of cross-hole radar tomography methods to monitor the effects of steam-induced heating in fractured rock environments. ?? 2006 European Association of Geoscientists & Engineers.

  3. Computed tomography of infantile hepatic hemangioendothelioma

    SciTech Connect

    Lucaya, J.; Enriquez, G.; Amat, L.; Gonzalez-Rivero, M.A.

    1985-04-01

    Computed tomography (CT) was performed on five infants with hepatic hemangioendothelioma. Precontrast scans showed solitary or multiple, homogeneous, circumscribed areas with reduced attenuation values. Tiny tumoral calcifications were identified in two patients. Serial scans, after injection of a bolus of contrast material, showed early massive enhancement, which was either diffuse or peripheral. On delayed scans, multinocular tumors became isodense with surrounding liver, while all solitary ones showed varied degrees of centripetal enhancement and persistent central cleftlike unenhanced areas. The authors believe that these CT features are characteristic and obviate arteriographic confirmation.

  4. Towards a Global Upper Mantle Attenuation Model

    NASA Astrophysics Data System (ADS)

    Karaoglu, Haydar; Romanowicz, Barbara

    2015-04-01

    Global anelastic tomography is crucial for addressing the nature of heterogeneity in the Earth's interior. The intrinsic attenuation manifests itself through dispersion and amplitude decay. These are contaminated by elastic effects such as (de)focusing and scattering. Therefore, mapping anelasticity accurately requires separation of elastic effects from the anelastic ones. To achieve this, a possible approach is to try and first predict elastic effects through the computation of seismic waveforms in a high resolution 3D elastic model, which can now be achieved accurately using numerical wavefield computations. Building upon the recent construction of such a whole mantle elastic and radially anisotropic shear velocity model (SEMUCB_WM1, French and Romanowicz, 2014), which will be used as starting model, our goal is to develop a higher resolution 3D attenuation model of the upper mantle based on full waveform inversion. As in the development of SEMUCB_WM1, forward modeling will be performed using the spectral element method, while the inverse problem will be treated approximately, using normal mode asymptotics. Both fundamental and overtone time domain long period waveforms (T>60s) will be used from a dataset of over 200 events observed at several hundred stations globally. Here we present preliminary results of synthetic tests, exploring different iterative inversion strategies.

  5. Line Integral of a Vector.

    ERIC Educational Resources Information Center

    Balabanian, Norman

    This programed booklet is designed for the engineering student who understands and can use vector and unit vector notation, components of a vector, parallel law of vector addition, and the dot product of two vectors. Content begins with work done by a force in moving a body a certain distance along some path. For each of the examples and problem…

  6. Digitally Controlled Beam Attenuator

    NASA Astrophysics Data System (ADS)

    Peppler, W. W.; Kudva, B.; Dobbins, J. T.; Lee, C. S.; Van Lysel, M. S.; Hasegawa, B. H.; Mistretta, C. A.

    1982-12-01

    In digital fluorographic techniques the video camera must accommodate a wide dynamic range due to the large variation in the subject thickness within the field of view. Typically exposure factors and the optical aperture are selected such that the maximum video signal is obtained in the most transmissive region of the subject. Consequently, it has been shown that the signal-to-noise ratio is severely reduced in the dark regions. We have developed a prototype digital beam attenuator (DBA) which will alleviate this and some related problems in digital fluorography. The prototype DBA consists of a 6x6 array of pistons which are individually controlled. A membrane containing an attenuating solu-tion of (CeC13) in water and the piston matrix are placed between the x-ray tube and the subject. Under digital control the pistons are moved into the attenuating material in order to adjust the beam intensity over each of the 36 cells. The DBA control unit which digitizes the image during patient positioning will direct the pistons under hydraulic control to produce a uniform x-ray field exiting the subject. The pistons were designed to produce very little structural background in the image. In subtraction studies any structure would be cancelled. For non-subtraction studies such as cine-cardiology we are considering higher cell densities (eg. 64x64). Due to the narrow range of transmission provided by the DBA, in such studies ultra-high contrast films could be used to produce a high resolution quasi-subtraction display. Additional benefits of the DBA are: 1) reduced dose to the bright image areas when the dark areas are properly exposed. 2) improved scatter and glare to primary ratios, leading to improved contrast in the dark areas.

  7. Joint reconstruction of activity and attenuation map using LM SPECT emission data

    NASA Astrophysics Data System (ADS)

    Jha, Abhinav K.; Clarkson, Eric; Kupinski, Matthew A.; Barrett, Harrison H.

    2013-03-01

    Attenuation and scatter correction in single photon emission computed tomography (SPECT) imaging often requires a computed tomography (CT) scan to compute the attenuation map of the patient. This results in increased radiation dose for the patient, and also has other disadvantages such as increased costs and hardware complexity. Attenuation in SPECT is a direct consequence of Compton scattering, and therefore, if the scattered photon data can give information about the attenuation map, then the CT scan may not be required. In this paper, we investigate the possibility of joint reconstruction of the activity and attenuation map using list- mode (LM) SPECT emission data, including the scattered-photon data. We propose a path-based formalism to process scattered-photon data. Following this, we derive analytic expressions to compute the Craḿer-Rao bound (CRB) of the activity and attenuation map estimates, using which, we can explore the fundamental limit of information-retrieval capacity from LM SPECT emission data. We then suggest a maximum-likelihood (ML) scheme that uses the LM emission data to jointly reconstruct the activity and attenuation map. We also propose an expectation-maximization (EM) algorithm to compute the ML solution.

  8. Breast ultrasound tomography with two parallel transducer arrays

    NASA Astrophysics Data System (ADS)

    Huang, Lianjie; Shin, Junseob; Chen, Ting; Lin, Youzuo; Gao, Kai; Intrator, Miranda; Hanson, Kenneth

    2016-03-01

    Breast ultrasound tomography is an emerging imaging modality to reconstruct the sound speed, density, and ultrasound attenuation of the breast in addition to ultrasound reflection/beamforming images for breast cancer detection and characterization. We recently designed and manufactured a new synthetic-aperture breast ultrasound tomography prototype with two parallel transducer arrays consisting of a total of 768 transducer elements. The transducer arrays are translated vertically to scan the breast in a warm water tank from the chest wall/axillary region to the nipple region to acquire ultrasound transmission and reflection data for whole-breast ultrasound tomography imaging. The distance of these two ultrasound transducer arrays is adjustable for scanning breasts with different sizes. We use our breast ultrasound tomography prototype to acquire phantom and in vivo patient ultrasound data to study its feasibility for breast imaging. We apply our recently developed ultrasound imaging and tomography algorithms to ultrasound data acquired using our breast ultrasound tomography system. Our in vivo patient imaging results demonstrate that our breast ultrasound tomography can detect breast lesions shown on clinical ultrasound and mammographic images.

  9. Polycistronic viral vectors.

    PubMed

    de Felipe, P

    2002-09-01

    Traditionally, vectors for gene transfer/therapy experiments were mono- or bicistronic. In the latter case, vectors express the gene of interest coupled with a marker gene. An increasing demand for more complex polycistronic vectors has arisen in recent years to obtain complex gene transfer/therapy effects. In particular, this demand is stimulated by the hope of a more powerful effect from combined gene therapy than from single gene therapy in a process whose parallels lie in the multi-drug combined therapies for cancer or AIDS. In the 1980's we had only splicing signals and internal promoters to construct such vectors: now a new set of biotechnological tools enables us to design new and more reliable bicistronic and polycistronic vectors. This article focuses on the description and comparison of the strategies for co-expression of two genes in bicistronic vectors, from the oldest to the more recently described: internal promoters, splicing, reinitiation, IRES, self-processing peptides (e.g. foot-and-mouth disease virus 2A), proteolytic cleavable sites (e.g. fusagen) and fusion of genes. I propose a classification of these strategies based upon either the use of multiple transcripts (with transcriptional mechanisms), or single transcripts (using translational/post-translational mechanisms). I also examine the different attempts to utilize these strategies in the construction of polycistronic vectors and the main problems encountered. Several potential uses of these polycistronic vectors, both in basic research and in therapy-focused applications, are discussed. The importance of the study of viral gene expression strategies and the need to transfer this knowledge to vector design is highlighted.

  10. Fractal vector optical fields.

    PubMed

    Pan, Yue; Gao, Xu-Zhen; Cai, Meng-Qiang; Zhang, Guan-Lin; Li, Yongnan; Tu, Chenghou; Wang, Hui-Tian

    2016-07-15

    We introduce the concept of a fractal, which provides an alternative approach for flexibly engineering the optical fields and their focal fields. We propose, design, and create a new family of optical fields-fractal vector optical fields, which build a bridge between the fractal and vector optical fields. The fractal vector optical fields have polarization states exhibiting fractal geometry, and may also involve the phase and/or amplitude simultaneously. The results reveal that the focal fields exhibit self-similarity, and the hierarchy of the fractal has the "weeding" role. The fractal can be used to engineer the focal field. PMID:27420485

  11. An analytical approach to quantitative reconstruction of non-uniform attenuated brain SPECT.

    PubMed

    Liang, Z; Ye, J; Harrington, D P

    1994-11-01

    An analytical approach to quantitative brain SPECT (single-photon-emission computed tomography) with non-uniform attenuation is developed. The approach formulates accurately the projection-transform equation as a summation of primary- and scatter-photon contributions. The scatter contribution can be estimated using the multiple-energy-window samples and removed from the primary-energy-window data by subtraction. The approach models the primary contribution as a convolution of the attenuated source and the detector-response kernel at a constant depth from the detector with the central-ray approximation. The attenuated Radon transform of the source can be efficiently deconvolved using the depth-frequency relation. The approach inverts exactly the attenuated Radon transform by Fourier transforms and series expansions. The performance of the analytical approach was studied for both uniform- and non-uniform-attenuation cases, and compared to the conventional FBP (filtered-backprojection) method by computer simulations. A patient brain X-ray image was acquired by a CT (computed-tomography) scanner and converted to the object-specific attenuation map for 140 keV energy. The mathematical Hoffman brain phantom was used to simulate the emission source and was resized such that it was completely surrounded by the skull of the CT attenuation map. The detector-response kernel was obtained from measurements of a point source at several depths in air from a parallel-hole collimator of a SPECT camera. The projection data were simulated from the object-specific attenuating source including the depth-dependent detector response. Quantitative improvement (>5%) in reconstructing the data was demonstrated with the nonuniform attenuation compensation, as compared to the uniform attenuation correction and the conventional FBP reconstruction. The commuting time was less than 5 min on an HP/730 desktop computer for an image array of 1282*32 from 128 projections of 128*32 size. PMID

  12. Ultrasonic Attenuation in Zircaloy-4

    SciTech Connect

    Gomez, M.P.; Banchik, A.D.; Lopez Pumarega, M.I.; Ruzzante, J.E.

    2005-04-09

    In this work the relationship between Zircaloy-4 grain size and ultrasonic attenuation behavior was studied for longitudinal waves in the frequency range of 10-90 MHz. The attenuation was analyzed as a function of frequency for samples with different mechanical and heat treatments having recrystallized and Widmanstatten structures with different grain size. The attenuation behavior was analyzed by different scattering models, depending on grain size, wavelength and frequency.

  13. Chopping-Wheel Optical Attenuator

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B.

    1988-01-01

    Star-shaped rotating chopping wheel provides adjustable time-averaged attenuation of narrow beam of light without changing length of optical path or spectral distribution of light. Duty cycle or attenuation factor of chopped beam controlled by adjusting radius at which beam intersects wheel. Attenuation factor independent of wavelength. Useful in systems in which chopping frequency above frequency-response limits of photodetectors receiving chopped light. Used in systems using synchronous detection with lock-in amplifiers.

  14. Natural attenuation of contaminated soils.

    PubMed

    Mulligan, Catherine N; Yong, Raymond N

    2004-06-01

    Natural attenuation is increasing in use as a low cost means of remediating contaminated soil and groundwater. Modelling of contaminant migration plays a key role in evaluating natural attenuation as a remediation option and in ensuring that there will be no adverse impact on humans and the environment. During natural attenuation, the contamination must be characterized thoroughly and monitored through the process. In this paper, attenuation mechanisms for both organic and inorganic contaminants, use of models and protocols, role of monitoring and field case studies will be reviewed.

  15. Mathematical model of single-photon emission computed tomography

    SciTech Connect

    Clough, A.V.

    1986-01-01

    Single-photon emission computed tomography (SPECT) is a nuclear-medicine imaging technique that has been shown to provide clinically useful images of radionuclide distributions within the body. The problem of quantitative determination of tomographic activity images from a projection data set leads to a mathematical inverse problem which is formulated as an integral equation. The solution of this problem then depends on an accurate mathematical model as well as a reliable and efficient inversion algorithm. The effects of attenuation and Compton scatter within the body have been incorporated into the model in the hopes of providing a more physically realistic mathematical model. The attenuated Radon transform is the mathematical basis of SPECT. In this work, the case of constant attenuation is reviewed and a new proof of the Tretiak-Metz algorithm is presented. A space-domain version of the inverse attenuated Radon transform is derived. A special case of this transform that is applicable when the object is rotationally symmetric, and attenuated Abel transform is derived, and its inverse is found. A numerical algorithm for the implementation of the inverse attenuated Radon transform with constant attenuation is described and computer simulations are performed to demonstrate the results of the inversion procedure. With the use of the single-scatter approximation and an energy-windowed detector, the effects of Compton scatter are incorporated into the model. The data are then taken to be the sum of primary photons and single-scattered photons.

  16. Dual seven pinhole tomography

    SciTech Connect

    Bizais, Y.; Zubal, I.G.; Rowe, R.W.; Bennett, G.W.; Brill, A.B.

    1982-01-01

    Emission tomography using two orthogonal sets of projections through seven pinhole collimators is considered. This paper describes the acquisition system, the reconstruction algorithm, presents results obtained in phantom studies, and discusses the advantages and disadvantages of this method over conventional Seven Pinhole Tomography.

  17. Computed body tomography.

    PubMed

    Alfidi, R J; Haaga, J R

    1976-12-01

    Only the surface of the diagnostic possibilities inherent in CT imaging has been scratched. Solic organ pathology is readily visible in most instances by computed tomography. With further extension of present knowledge and development of newer contrast agents, the ability of computed body tomography to image a wide range of diseases appears almost limitless.

  18. Quantitative simultaneous positron emission tomography and magnetic resonance imaging

    PubMed Central

    Ouyang, Jinsong; Petibon, Yoann; Huang, Chuan; Reese, Timothy G.; Kolnick, Aleksandra L.; El Fakhri, Georges

    2014-01-01

    Abstract. Simultaneous positron emission tomography and magnetic resonance imaging (PET-MR) is an innovative and promising imaging modality that is generating substantial interest in the medical imaging community, while offering many challenges and opportunities. In this study, we investigated whether MR surface coils need to be accounted for in PET attenuation correction. Furthermore, we integrated motion correction, attenuation correction, and point spread function modeling into a single PET reconstruction framework. We applied our reconstruction framework to in vivo animal and patient PET-MR studies. We have demonstrated that our approach greatly improved PET image quality. PMID:26158055

  19. Bloch vector projection noise

    NASA Technical Reports Server (NTRS)

    Wang, Li-Jun; Bacon, A. M.; Zhao, H.-Z.; Thomas, J. E.

    1994-01-01

    In the optical measurement of the Bloch vector components describing a system of N two-level atoms, the quantum fluctuations in these components are coupled into the measuring optical field. This paper develops the quantum theory of optical measurement of Bloch vector projection noise. The preparation and probing of coherence in an effective two-level system consisting of the two ground states in an atomic three-level lambda-scheme are analyzed.

  20. Poynting-vector filter

    SciTech Connect

    Carrigan, Charles R.

    2011-08-02

    A determination is made of frequency components associated with a particular bearing or location resulting from sources emitting electromagnetic-wave energy for which a Poynting-Vector can be defined. The broadband frequency components associated with a specific direction or location of interest are isolated from other components in the power spectrum that are not associated with the direction or location of interest. The collection of pointing vectors can be used to characterize the source.

  1. Growth Attenuation Therapy.

    PubMed

    Kerruish, Nikki

    2016-01-01

    The "Ashley treatment" has provoked much debate and remains ethically controversial. Given that more children are being referred for such treatment, there remains a need to provide advice to clinicians and ethics committees regarding how to respond to such requests. This article contends that there is one particularly important gap in the existing literature about growth attenuation therapy (GAT) (one aspect of the Ashley treatment): the views of parents of children with profound cognitive impairment (PCI) remain significantly underrepresented. The article attempts to redress this balance by analyzing published accounts both from parents of children who have received GAT and from parents who oppose treatment. Using these accounts, important points are illuminated regarding how parents characterize benefits and harms, and their responsibilities as surrogate decisionmakers. This analysis could contribute to decisionmaking about future requests for GAT and might also have wider relevance to healthcare decisionmaking for children with PCI. PMID:26788948

  2. Fiber optic attenuator

    NASA Technical Reports Server (NTRS)

    Buzzetti, Mike F. (Inventor)

    1994-01-01

    A fiber optic attenuator of the invention is a mandrel structure through which a bundle of optical fibers is wrapped around in a complete circle. The mandrel structure includes a flexible cylindrical sheath through which the bundle passes. A set screw on the mandrel structure impacts one side of the sheath against two posts on the opposite side of the sheath. By rotating the screw, the sheath is deformed to extend partially between the two posts, bending the fiber optic bundle to a small radius controlled by rotating the set screw. Bending the fiber optic bundle to a small radius causes light in each optical fiber to be lost in the cladding, the amount depending upon the radius about which the bundle is bent.

  3. Syngeneic AAV pseudo-vectors potentiates full vector transduction

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An excessive amount of empty capsids are generated during regular AAV vector production process. These pseudo-vectors often remain in final vectors used for animal studies or clinical trials. The potential effects of these pseudo-vectors on AAV transduction have been a major concern. In the current ...

  4. Suicide Risk: Amplifiers and Attenuators.

    ERIC Educational Resources Information Center

    Plutchik, Robert; Van Praag, Herman M.

    1994-01-01

    Attempts to integrate findings on correlates of suicide and violent risk in terms of a theory called a two-stage model of countervailing forces, which assumes that the strength of aggressive impulses is modified by amplifiers and attenuators. The vectorial interaction of amplifiers and attenuators creates an unstable equilibrium making prediction…

  5. Vector and Axial Vector Pion Form Factors

    NASA Astrophysics Data System (ADS)

    Vitz, Michael; PEN Collaboration

    2015-04-01

    Radiative pion decay π+ -->e+ νγ (RPD) provides critical input to chiral perturbation theory (χPT). Aside from the uninteresting ``inner bremsstrahlung'' contribution from QED, the RPD rate contains ``structure dependent'' terms given by FV and FA, the vector and axial-vector pion form factors, respectively. The two appear in the decay rate in combinations FV -FA and FV +FA , i.e., in the so-called SD- and SD+ terms, respectively. The latter has been measured to high precision by the PIBETA collaboration. We report on the analysis of new data, measured by the PEN collaboration in runs between 2008 and 2010 at the Paul Scherrer Institute, Switzerland. We particularly focus on the possibility of improvement in the determination of the SD- term. Precise determinations of FV and FA test the validity of the CVC hypothesis, provide numerical input for the l9 +l10 terms in the χPT lagrangian, and constrain potential non-(V - A) terms, such as a possible tensor term FT. NSF grants PHY-0970013, 1307328, and others.

  6. Bunyavirus-vector interactions.

    PubMed

    Beaty, B J; Bishop, D H

    1988-06-01

    Recent advances in the genetics and molecular biology of bunyaviruses have been applied to understanding bunyavirus-vector interactions. Such approaches have revealed which virus gene and gene products are important in establishing infections in vectors and in transmission of viruses. However, much more information is required to understand the molecular mechanisms of persistent infections of vectors which are lifelong but apparently exert no untoward effect. In fact, it seems remarkable that LAC viral antigen can be detected in almost every cell in an ovarian follicle, yet no untoward effect on fecundity and no teratology is seen. Similarly the lifelong infection of the vector would seem to provide ample opportunity for bunyavirus evolution by genetic drift and, under the appropriate circumstances, by segment reassortment. The potential for bunyavirus evolution by segment reassortment in vectors certainly exists. For example the Group C viruses in a small forest in Brazil seem to constitute a gene pool, with the 6 viruses related alternately by HI/NT and CF reactions, which assay respectively M RNA and S RNA gene products (Casals and Whitman, 1960; Shope and Causey, 1962). Direct evidence for naturally occurring reassortant bunyaviruses has also been obtained. Oligonucleotide fingerprint analyses of field isolates of LAC virus and members of the Patois serogroup of bunyaviruses have demonstrated that reassortment does occur in nature (El Said et al., 1979; Klimas et al., 1981; Ushijima et al., 1981). Determination of the genotypic frequencies of viruses selected by the biological interactions of viruses and vectors after dual infection and segment reassortment is an important issue. Should a virus result that efficiently interacts with alternate vector species, the virus could be expressed in different circumstances with serious epidemiologic consequences. Dual infection of vectors with different viruses is not unlikely, because many bunyaviruses are sympatric in

  7. Nonodontogenic mandibular lesions: differentiation based on CT attenuation

    PubMed Central

    Özgür, Anıl; Kara, Engin; Arpacı, Rabia; Arpacı, Taner; Esen, Kaan; Kara, Taylan; Duce, Meltem Nass; Apaydın, Feramuz Demir

    2014-01-01

    Mandibular lesions are classified as odontogenic and nonodontogenic based on the cell of origin. Odontogenic lesions are frequently encountered at head and neck imaging. However, several nonodontogenic pathologies may also involve mandible and present further diagnostic dilemma. Awareness of the imaging features of nonodontogenic lesions is crucial in order to guide clinicians in proper patient management. Computed tomography (CT) may provide key information to narrow diagnostic considerations. Nonodontogenic mandibular lesions may have lytic, sclerotic, ground-glass, or mixed lytic and sclerotic appearances on CT. In this article, our aim is to present various nonodontogenic lesions of the mandible by categorizing them according to their attenuations on CT. PMID:25297390

  8. Quantification of numerical aperture-dependence of the OCT attenuation coefficient (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Peinado, Liliana M.; Bloemen, Paul R.; Almasian, Mitra; van Leeuwen, Ton G.; Faber, Dirk J.

    2016-03-01

    Despite the improvements in early cancer diagnosis, adequate diagnostic tools for early staging of bladder cancer tumors are lacking [1]. MEMS-probes based on optical coherence tomography (OCT) provide cross-sectional imaging with a high-spatial resolution at a high-imaging speed, improving visualization of cancerous tissue [2-3]. Additionally, studies show that the measurement of localized attenuation coefficient allows discrimination between healthy and cancerous tissue [4]. We have designed a new miniaturized MEMS-probe based on OCT that will optimize early diagnosis by improving functional visualization of suspicious lesions in bladder. During the optical design phase of the probe, we have studied the effect of the numerical aperture (NA) on the OCT signal attenuation. For this study, we have employed an InnerVision Santec OCT system with several numerical apertures (25mm, 40mm, 60mm, 100mm, 150mm and 200mm using achromatic lenses). The change in attenuation coefficient was studied using 15 dilutions of intralipid ranging between 6*10-5 volume% and 20 volume%. We obtained the attenuation coefficient from the OCT images at several fixed positions of the focuses using established OCT models (e.g. single scattering with known confocal point spread function (PSF) [5] and multiple scattering using the Extended Huygens Fresnel model [6]). As a result, a non-linear increase of the scattering coefficient as a function of intralipid concentration (due to dependent scattering) was obtained for all numerical apertures. For all intralipid samples, the measured attenuation coefficient decreased with a decrease in NA. Our results suggest a non-negligible influence of the NA on the measured attenuation coefficient. [1] Khochikar MV. Rationale for an early detection program for bladder cancer. Indian J Urol 2011 Apr-Jun; 27(2): 218-225. [2] Sun J and Xie H. Review Article MEMS-Based Endoscopic Optical Coherence Tomography. IJO 2011, Article ID 825629, 12 pages. doi:10

  9. Live bacterial vaccine vectors: An overview

    PubMed Central

    da Silva, Adilson José; Zangirolami, Teresa Cristina; Novo-Mansur, Maria Teresa Marques; Giordano, Roberto de Campos; Martins, Elizabeth Angélica Leme

    2014-01-01

    Genetically attenuated microorganisms, pathogens, and some commensal bacteria can be engineered to deliver recombinant heterologous antigens to stimulate the host immune system, while still offering good levels of safety. A key feature of these live vectors is their capacity to stimulate mucosal as well as humoral and/or cellular systemic immunity. This enables the use of different forms of vaccination to prevent pathogen colonization of mucosal tissues, the front door for many infectious agents. Furthermore, delivery of DNA vaccines and immune system stimulatory molecules, such as cytokines, can be achieved using these special carriers, whose adjuvant properties and, sometimes, invasive capacities enhance the immune response. More recently, the unique features and versatility of these vectors have also been exploited to develop anti-cancer vaccines, where tumor-associated antigens, cytokines, and DNA or RNA molecules are delivered. Different strategies and genetic tools are constantly being developed, increasing the antigenic potential of agents delivered by these systems, opening fresh perspectives for the deployment of vehicles for new purposes. Here we summarize the main characteristics of the different types of live bacterial vectors and discuss new applications of these delivery systems in the field of vaccinology. PMID:25763014

  10. Evaluation of attenuation and scatter correction requirements in small animal PET and SPECT imaging

    NASA Astrophysics Data System (ADS)

    Konik, Arda Bekir

    Positron emission tomography (PET) and single photon emission tomography (SPECT) are two nuclear emission-imaging modalities that rely on the detection of high-energy photons emitted from radiotracers administered to the subject. The majority of these photons are attenuated (absorbed or scattered) in the body, resulting in count losses or deviations from true detection, which in turn degrades the accuracy of images. In clinical emission tomography, sophisticated correction methods are often required employing additional x-ray CT or radionuclide transmission scans. Having proven their potential in both clinical and research areas, both PET and SPECT are being adapted for small animal imaging. However, despite the growing interest in small animal emission tomography, little scientific information exists about the accuracy of these correction methods on smaller size objects, and what level of correction is required. The purpose of this work is to determine the role of attenuation and scatter corrections as a function of object size through simulations. The simulations were performed using Interactive Data Language (IDL) and a Monte Carlo based package, Geant4 application for emission tomography (GATE). In IDL simulations, PET and SPECT data acquisition were modeled in the presence of attenuation. A mathematical emission and attenuation phantom approximating a thorax slice and slices from real PET/CT data were scaled to 5 different sizes (i.e., human, dog, rabbit, rat and mouse). The simulated emission data collected from these objects were reconstructed. The reconstructed images, with and without attenuation correction, were compared to the ideal (i.e., non-attenuated) reconstruction. Next, using GATE, scatter fraction values (the ratio of the scatter counts to the total counts) of PET and SPECT scanners were measured for various sizes of NEMA (cylindrical phantoms representing small animals and human), MOBY (realistic mouse/rat model) and XCAT (realistic human model

  11. Attenuation of Vaccinia Virus.

    PubMed

    Yakubitskiy, S N; Kolosova, I V; Maksyutov, R A; Shchelkunov, S N

    2015-01-01

    Since 1980, in the post-smallpox vaccination era the human population has become increasingly susceptible compared to a generation ago to not only the variola (smallpox) virus, but also other zoonotic orthopoxviruses. The need for safer vaccines against orthopoxviruses is even greater now. The Lister vaccine strain (LIVP) of vaccinia virus was used as a parental virus for generating a recombinant 1421ABJCN clone defective in five virulence genes encoding hemagglutinin (A56R), the IFN-γ-binding protein (B8R), thymidine kinase (J2R), the complement-binding protein (C3L), and the Bcl-2-like inhibitor of apoptosis (N1L). We found that disruption of these loci does not affect replication in mammalian cell cultures. The isogenic recombinant strain 1421ABJCN exhibits a reduced inflammatory response and attenuated neurovirulence relative to LIVP. Virus titers of 1421ABJCN were 3 lg lower versus the parent VACV LIVP when administered by the intracerebral route in new-born mice. In a subcutaneous mouse model, 1421ABJCN displayed levels of VACV-neutralizing antibodies comparable to those of LIVP and conferred protective immunity against lethal challenge by the ectromelia virus. The VACV mutant holds promise as a safe live vaccine strain for preventing smallpox and other orthopoxvirus infections. PMID:26798498

  12. Vector financial rogue waves

    NASA Astrophysics Data System (ADS)

    Yan, Zhenya

    2011-11-01

    The coupled nonlinear volatility and option pricing model presented recently by Ivancevic is investigated, which generates a leverage effect, i.e., stock volatility is (negatively) correlated to stock returns, and can be regarded as a coupled nonlinear wave alternative of the Black-Scholes option pricing model. In this Letter, we analytically propose vector financial rogue waves of the coupled nonlinear volatility and option pricing model without an embedded w-learning. Moreover, we exhibit their dynamical behaviors for chosen different parameters. The vector financial rogue wave (rogon) solutions may be used to describe the possible physical mechanisms for the rogue wave phenomena and to further excite the possibility of relative researches and potential applications of vector rogue waves in the financial markets and other related fields.

  13. Vectorized garbage collection

    SciTech Connect

    Appel, A.W.; Bendiksen, A.

    1988-01-01

    Garbage collection can be done in vector mode on supercomputers like the Cray-2 and the Cyber 205. Both copying collection and mark-and-sweep can be expressed as breadth-first searches in which the queue can be processed in parallel. The authors have designed a copying garbage collector whose inner loop works entirely in vector mode. The only significant limitation of the algorithm is that if the size of the records is not constant, the implementation becomes much more complicated. The authors give performance measurements of the algorithm as implemented for Lisp CONS cells on the Cyber 205. Vector-mode garbage collection performs up to 9 times faster than scalar-mode collection.

  14. Computed Tomography (CT) -- Head

    MedlinePlus

    ... further information please consult the ACR Manual on Contrast Media and its references. The risk of serious allergic ... Angiography (CTA) Stroke Brain Tumors Computer Tomography (CT) Safety During Pregnancy Head and Neck Cancer X-ray, ...

  15. Computed Tomography (CT) -- Sinuses

    MedlinePlus

    ... further information please consult the ACR Manual on Contrast Media and its references. The risk of serious allergic ... X-ray, Interventional Radiology and Nuclear Medicine Radiation Safety Images related to Computed Tomography (CT) - Sinuses About ...

  16. Bunyavirus-Vector Interactions

    PubMed Central

    Horne, Kate McElroy; Vanlandingham, Dana L.

    2014-01-01

    The Bunyaviridae family is comprised of more than 350 viruses, of which many within the Hantavirus, Orthobunyavirus, Nairovirus, Tospovirus, and Phlebovirus genera are significant human or agricultural pathogens. The viruses within the Orthobunyavirus, Nairovirus, and Phlebovirus genera are transmitted by hematophagous arthropods, such as mosquitoes, midges, flies, and ticks, and their associated arthropods not only serve as vectors but also as virus reservoirs in many cases. This review presents an overview of several important emerging or re-emerging bunyaviruses and describes what is known about bunyavirus-vector interactions based on epidemiological, ultrastructural, and genetic studies of members of this virus family. PMID:25402172

  17. Geophysical tomography for imaging water movement in welded tuff

    SciTech Connect

    Daily, W.D.; Ramirez, A.L.

    1986-09-01

    Alterant tomography has been evaluated for its ability to delineate in-situ water flow paths in a fractured welded-tuff rock mass. The evaluation involved a field experiment in which tomographs of electromagnetic attenuation factor (or attenuation rate) at 300 MHz were made before, during, and after the introduction to the rock of two different water-based tracers: a plain water and dye solution, and salt water and dye. Alterant tomographs were constructed by subtracting, cell by cell, the attenuation factors derived from measurements before each tracer was added to the rock mass from the attenuation factors derived after each tracer was added. The alterant tomographs were compared with other evidence of water movement in the rock: borescope logs of fractures, and post experiment cores used to locate the dye tracer on the fractured surfaces. These comparisons indicate that alterant tomography is suitable for mapping water flow through fractures and that it may be useful in inferring which of the fractures are hydrologically connected in the image plane. The technique appears to be sensitive enough to delineate flow through a single fracture and to define fractures with a spatial resolution of about 10 cm on an imaging scale of a few meters. 9 refs., 3 figs.

  18. Determination of acoustic attenuation in the Hudson River Estuary by means of ship noise observations.

    PubMed

    Roh, Heui-Seol; Sutin, Alexander; Bunin, Barry

    2008-06-01

    Analysis of sound propagation in a complex urban estuary has application to underwater threat detection systems, underwater communication, and acoustic tomography. One of the most important acoustic parameters, sound attenuation, was analyzed in the Hudson River near Manhattan using measurements of acoustic noise generated by passing ships and recorded by a fixed hydrophone. Analysis of the ship noise level for varying distances allowed estimation of the sound attenuation in the frequency band of 10-80 kHz. The effective attenuation coefficient representing the attenuation loss above cylindrical spreading loss had only slight frequency dependence and can be estimated by the frequency independent value of 0.058 dBm. PMID:18537300

  19. Support vector machines

    NASA Technical Reports Server (NTRS)

    Garay, Michael J.; Mazzoni, Dominic; Davies, Roger; Wagstaff, Kiri

    2004-01-01

    Support Vector Machines (SVMs) are a type of supervised learning algorith,, other examples of which are Artificial Neural Networks (ANNs), Decision Trees, and Naive Bayesian Classifiers. Supervised learning algorithms are used to classify objects labled by a 'supervisor' - typically a human 'expert.'.

  20. Vector potential methods

    NASA Technical Reports Server (NTRS)

    Hafez, M.

    1989-01-01

    Vector potential and related methods, for the simulation of both inviscid and viscous flows over aerodynamic configurations, are briefly reviewed. The advantages and disadvantages of several formulations are discussed and alternate strategies are recommended. Scalar potential, modified potential, alternate formulations of Euler equations, least-squares formulation, variational principles, iterative techniques and related methods, and viscous flow simulation are discussed.

  1. Killing vectors and anisotropy

    SciTech Connect

    Krisch, J. P.; Glass, E. N.

    2009-08-15

    We consider an action that can generate fluids with three unequal stresses for metrics with a spacelike Killing vector. The parameters in the action are directly related to the stress anisotropies. The field equations following from the action are applied to an anisotropic cosmological expansion and an extension of the Gott-Hiscock cosmic string.

  2. Production of lentiviral vectors

    PubMed Central

    Merten, Otto-Wilhelm; Hebben, Matthias; Bovolenta, Chiara

    2016-01-01

    Lentiviral vectors (LV) have seen considerably increase in use as gene therapy vectors for the treatment of acquired and inherited diseases. This review presents the state of the art of the production of these vectors with particular emphasis on their large-scale production for clinical purposes. In contrast to oncoretroviral vectors, which are produced using stable producer cell lines, clinical-grade LV are in most of the cases produced by transient transfection of 293 or 293T cells grown in cell factories. However, more recent developments, also, tend to use hollow fiber reactor, suspension culture processes, and the implementation of stable producer cell lines. As is customary for the biotech industry, rather sophisticated downstream processing protocols have been established to remove any undesirable process-derived contaminant, such as plasmid or host cell DNA or host cell proteins. This review compares published large-scale production and purification processes of LV and presents their process performances. Furthermore, developments in the domain of stable cell lines and their way to the use of production vehicles of clinical material will be presented. PMID:27110581

  3. Gene transfer vector

    SciTech Connect

    Puhler, A.; Simon, R.

    1987-08-11

    A Tn-Mob vector is described comprising: (a) A replicon functional E. coli; and (b) A Tn-Mob element comprising a transposon containing (i) a functional selection marker, and (ii) a Mob-site and oriT located in a region of the transposon that is not essential to transposability.

  4. Redshifts and Killing vectors

    NASA Astrophysics Data System (ADS)

    Harvey, Alex; Schucking, Engelbert; Surowitz, Eugene J.

    2006-11-01

    Current approaches to physics stress the importance of conservation laws due to spacetime and internal symmetries. In special and general relativity the generators of these symmetries are known as Killing vectors. We use them for the rigorous determination of gravitational and cosmological redshifts.

  5. Vector-borne diseases.

    PubMed

    Gubler, D J

    2009-08-01

    Vector-borne diseases have been the scourge of man and animals since the beginning of time. Historically, these are the diseases that caused the great plagues such as the 'Black Death' in Europe in the 14th Century and the epidemics of yellow fever that plagued the development of the New World. Others, such as Nagana, contributed to the lack of development in Africa for many years. At the turn of the 20th Century, vector-borne diseases were among the most serious public and animal health problems in the world. For the most part, these diseases were controlled by the middle of the 20th Century through the application of knowledge about their natural history along with the judicious use of DDT (dichlorodiphenyltrichloroethane) and other residual insecticides to interrupt the transmission cycle between arthropod and vertebrate host. However, this success initiated a period of complacency in the 1960s and 1970s, which resulted in the redirection of resources away from prevention and control of vector-borne diseases. The 1970s was also a time in which there were major changes to public health policy. Global trends, combined with changes in animal husbandry, urbanisation, modern transportation and globalisation, have resulted in a global re-emergence of epidemic vector-borne diseases affecting both humans and animals over the past 30 years. PMID:20128467

  6. Vector-borne diseases.

    PubMed

    Gubler, D J

    2009-08-01

    Vector-borne diseases have been the scourge of man and animals since the beginning of time. Historically, these are the diseases that caused the great plagues such as the 'Black Death' in Europe in the 14th Century and the epidemics of yellow fever that plagued the development of the New World. Others, such as Nagana, contributed to the lack of development in Africa for many years. At the turn of the 20th Century, vector-borne diseases were among the most serious public and animal health problems in the world. For the most part, these diseases were controlled by the middle of the 20th Century through the application of knowledge about their natural history along with the judicious use of DDT (dichlorodiphenyltrichloroethane) and other residual insecticides to interrupt the transmission cycle between arthropod and vertebrate host. However, this success initiated a period of complacency in the 1960s and 1970s, which resulted in the redirection of resources away from prevention and control of vector-borne diseases. The 1970s was also a time in which there were major changes to public health policy. Global trends, combined with changes in animal husbandry, urbanisation, modern transportation and globalisation, have resulted in a global re-emergence of epidemic vector-borne diseases affecting both humans and animals over the past 30 years.

  7. Singular Vectors' Subtle Secrets

    ERIC Educational Resources Information Center

    James, David; Lachance, Michael; Remski, Joan

    2011-01-01

    Social scientists use adjacency tables to discover influence networks within and among groups. Building on work by Moler and Morrison, we use ordered pairs from the components of the first and second singular vectors of adjacency matrices as tools to distinguish these groups and to identify particularly strong or weak individuals.

  8. Transmission-less attenuation estimation from time-of-flight PET histo-images using consistency equations

    NASA Astrophysics Data System (ADS)

    Li, Yusheng; Defrise, Michel; Metzler, Scott D.; Matej, Samuel

    2015-08-01

    In positron emission tomography (PET) imaging, attenuation correction with accurate attenuation estimation is crucial for quantitative patient studies. Recent research showed that the attenuation sinogram can be determined up to a scaling constant utilizing the time-of-flight information. The TOF-PET data can be naturally and efficiently stored in a histo-image without information loss, and the radioactive tracer distribution can be efficiently reconstructed using the DIRECT approaches. In this paper, we explore transmission-less attenuation estimation from TOF-PET histo-images. We first present the TOF-PET histo-image formation and the consistency equations in the histo-image parameterization, then we derive a least-squares solution for estimating the directional derivatives of the attenuation factors from the measured emission histo-images. Finally, we present a fast solver to estimate the attenuation factors from their directional derivatives using the discrete sine transform and fast Fourier transform while considering the boundary conditions. We find that the attenuation histo-images can be uniquely determined from the TOF-PET histo-images by considering boundary conditions. Since the estimate of the attenuation directional derivatives can be inaccurate for LORs tangent to the patient boundary, external sources, e.g. a ring or annulus source, might be needed to give an accurate estimate of the attenuation gradient for such LORs. The attenuation estimation from TOF-PET emission histo-images is demonstrated using simulated 2D TOF-PET data.

  9. 3D acoustic atmospheric tomography

    NASA Astrophysics Data System (ADS)

    Rogers, Kevin; Finn, Anthony

    2014-10-01

    This paper presents a method for tomographically reconstructing spatially varying 3D atmospheric temperature profiles and wind velocity fields based. Measurements of the acoustic signature measured onboard a small Unmanned Aerial Vehicle (UAV) are compared to ground-based observations of the same signals. The frequency-shifted signal variations are then used to estimate the acoustic propagation delay between the UAV and the ground microphones, which are also affected by atmospheric temperature and wind speed vectors along each sound ray path. The wind and temperature profiles are modelled as the weighted sum of Radial Basis Functions (RBFs), which also allow local meteorological measurements made at the UAV and ground receivers to supplement any acoustic observations. Tomography is used to provide a full 3D reconstruction/visualisation of the observed atmosphere. The technique offers observational mobility under direct user control and the capacity to monitor hazardous atmospheric environments, otherwise not justifiable on the basis of cost or risk. This paper summarises the tomographic technique and reports on the results of simulations and initial field trials. The technique has practical applications for atmospheric research, sound propagation studies, boundary layer meteorology, air pollution measurements, analysis of wind shear, and wind farm surveys.

  10. Attenuated oncolytic Measles Virus strains as cancer therapeutics

    PubMed Central

    Msaouel, P.; Iankov, I.D.; Dispenzieri, A.; Galanis, E.

    2011-01-01

    Attenuated measles virus vaccine strains have emerged as a promising oncolytic vector platform, having shown significant anti-tumor activity against a broad range of malignant neoplasms. Measles virus strains derived from the attenuated Edmonston-B (MV-Edm) vaccine lineage have been shown to selectively infect, replicate in and lyse cancer cells while causing minimal cytopathic effect on normal tissues. This review summarizes the preclinical data that led to the rapid clinical translation of oncolytic measles vaccine strains and provides an overview of early clinical data using this oncolytic platform. Furthermore, novel approaches currently under development to further enhance the oncolytic efficacy of MV-Edm strains, including strategies to circumvent immunity or modulate immune system responses, combinatorial approaches with standard treatment modalities, virus retargeting as well as strategies for in vivo monitoring of viral replication are discussed. PMID:21740361

  11. Reconstruction of multiple line source attenuation maps

    SciTech Connect

    Celler, A.; Sitek, A.; Harrop, R.

    1996-12-31

    A simple configuration for a transmission source for the single photon emission computed tomography (SPECT) was proposed, which utilizes a series of collimated line sources parallel to the axis of rotation of a camera. The detector is equipped with a standard parallel hole collimator. We have demonstrated that this type of source configuration can be used to generate sufficient data for the reconstruction of the attenuation map when using 8-10 line sources spaced by 3.5-4.5 cm for a 30 x 40cm detector at 65cm distance from the sources. Transmission data for a nonuniform thorax phantom was simulated, then binned and reconstructed using filtered backprojection (FBP) and iterative methods. The optimum maps are obtained with data binned into 2-3 bins and FBP reconstruction. The activity in the source was investigated for uniform and exponential activity distributions, as well as the effect of gaps and overlaps of the neighboring fan beams. A prototype of the line source has been built and the experimental verification of the technique has started.

  12. Simulation study of respiratory-induced errors in cardiac positron emission tomography/computed tomography

    SciTech Connect

    Fitzpatrick, Gianna M.; Wells, R. Glenn

    2006-08-15

    Heart disease is a leading killer in Canada and positron emission tomography (PET) provides clinicians with in vivo metabolic information for diagnosing heart disease. Transmission data are usually acquired with {sup 68}Ge, although the advent of PET/CT scanners has made computed tomography (CT) an alternative option. The fast data acquisition of CT compared to PET may cause potential misregistration problems, leading to inaccurate attenuation correction (AC). Using Monte Carlo simulations and an anthropomorphic dynamic computer phantom, this study determines the magnitude and location of respiratory-induced errors in radioactivity uptake measured in cardiac PET/CT. A homogeneous tracer distribution in the heart was considered. The AC was based on (1) a time-averaged attenuation map (2) CT maps from a single phase of the respiratory cycle, and (3) CT maps phase matched to the emission data. Circumferential profiles of the heart uptake were compared and differences of up to 24% were found between the single-phase CT-AC method and the true phantom values. Simulation results were supported by a PET/CT canine study which showed differences of up to 10% in the heart uptake in the lung-heart boundary region when comparing {sup 68}Ge- to CT-based AC with the CT map acquired at end inhalation.

  13. [Vector control and malaria control].

    PubMed

    Carnevale, P; Mouchet, J

    1990-01-01

    Vector control is an integral part of malaria control. Limiting parasite transmission vector control must be considered as one of the main preventive measure. Indeed it prevents transmission of Plasmodium from man to vector and from vector to man. But vector control must be adapted to local situation to be efficient and feasible. Targets of vector control can be larval and/or adults stages. In both cases 3 main methods are currently available: physical (source reduction), chemical (insecticides) and biological tolls. Antilarval control is useful only in some particular circumstances (unstable malaria, island, oasis...) Antiadult control is mainly based upon house-spraying while pyrethroid treated bed nets is advocated regarding efficiency, simple technique and cheap price. Vector control measures could seem restricted but can be very efficient if political will is added to a right choice of adapted measures, a good training of involved personal and a large information of the population concerned with vector control.

  14. Low attenuation areas in normal costal cartilages on CT: clinical implication and correlation with histology.

    PubMed

    Lee, Seunghun; Choi, Yo Won; Jeon, Seok Chol

    2012-05-01

    While normal costal cartilages are known to be homogenous in attenuation on computed tomography (CT), they frequently show internal low attenuation. This study was performed to assess CT features of the low attenuation and to correlate them with histological features. Chest CT scans of 80 patients without chest wall abnormalities in the first eight decades of age with ten consecutive patients in each decade were reviewed. Histological examinations and CT of three costal cartilage specimens, one each from three cadavers, were done. Of the 80 patients, low attenuation areas were noted in 32% of the upper seven costal cartilages and in 64 patients (80%) without significant sexual difference (P = 0.503 and 0.786, respectively). The areas appeared more frequently in the lower costal cartilages than the upper ones, and were mostly symmetrical in distribution (82%). They were usually ill defined (74%) and similar in attenuation to the chest wall muscle (94%), located centrally (100%), and at most a half of the cartilage diameter. In all three cartilage specimens, central areas were grossly distinct from surrounding areas, and were corresponded to low attenuation areas on CT. At histological exam, the central areas showed multiple foci of vascularized loose connective tissue and fat on myxoid background, generally agreeing with the previous description of cartilage canals, a kind of nutrient channel. In conclusion, normal costal cartilages can show central low attenuation areas, which are typically symmetrical in distribution and at most a half of the cartilage diameter.

  15. Practical Bayesian tomography

    NASA Astrophysics Data System (ADS)

    Granade, Christopher; Combes, Joshua; Cory, D. G.

    2016-03-01

    In recent years, Bayesian methods have been proposed as a solution to a wide range of issues in quantum state and process tomography. State-of-the-art Bayesian tomography solutions suffer from three problems: numerical intractability, a lack of informative prior distributions, and an inability to track time-dependent processes. Here, we address all three problems. First, we use modern statistical methods, as pioneered by Huszár and Houlsby (2012 Phys. Rev. A 85 052120) and by Ferrie (2014 New J. Phys. 16 093035), to make Bayesian tomography numerically tractable. Our approach allows for practical computation of Bayesian point and region estimators for quantum states and channels. Second, we propose the first priors on quantum states and channels that allow for including useful experimental insight. Finally, we develop a method that allows tracking of time-dependent states and estimates the drift and diffusion processes affecting a state. We provide source code and animated visual examples for our methods.

  16. Efficient quantum state tomography.

    PubMed

    Cramer, Marcus; Plenio, Martin B; Flammia, Steven T; Somma, Rolando; Gross, David; Bartlett, Stephen D; Landon-Cardinal, Olivier; Poulin, David; Liu, Yi-Kai

    2010-01-01

    Quantum state tomography--deducing quantum states from measured data--is the gold standard for verification and benchmarking of quantum devices. It has been realized in systems with few components, but for larger systems it becomes unfeasible because the number of measurements and the amount of computation required to process them grows exponentially in the system size. Here, we present two tomography schemes that scale much more favourably than direct tomography with system size. One of them requires unitary operations on a constant number of subsystems, whereas the other requires only local measurements together with more elaborate post-processing. Both rely only on a linear number of experimental operations and post-processing that is polynomial in the system size. These schemes can be applied to a wide range of quantum states, in particular those that are well approximated by matrix product states. The accuracy of the reconstructed states can be rigorously certified without any a priori assumptions.

  17. 4D Electron Tomography

    NASA Astrophysics Data System (ADS)

    Kwon, Oh-Hoon; Zewail, Ahmed H.

    2010-06-01

    Electron tomography provides three-dimensional (3D) imaging of noncrystalline and crystalline equilibrium structures, as well as elemental volume composition, of materials and biological specimens, including those of viruses and cells. We report the development of 4D electron tomography by integrating the fourth dimension (time resolution) with the 3D spatial resolution obtained from a complete tilt series of 2D projections of an object. The different time frames of tomograms constitute a movie of the object in motion, thus enabling studies of nonequilibrium structures and transient processes. The method was demonstrated using carbon nanotubes of a bracelet-like ring structure for which 4D tomograms display different modes of motion, such as breathing and wiggling, with resonance frequencies up to 30 megahertz. Applications can now make use of the full space-time range with the nanometer-femtosecond resolution of ultrafast electron tomography.

  18. Elusive vector glueball

    SciTech Connect

    Suzuki, Mahiko

    2002-05-01

    If the vector glueball {Omicron} exists in the mass range that theory suggests, its resonant production cross section can be detected in e{sup +}e{sup -} annihilation only if the decay width is very narrow ({le} a few MeV). Otherwise {Omicron} will be observed only indirectly through its mixing with {psi}{prime}. We propose a few tests of the {Omicron}-{psi}{prime} mixing for future charm factories.

  19. Vector soliton fission.

    PubMed

    Lu, F; Lin, Q; Knox, W H; Agrawal, Govind P

    2004-10-29

    We investigate the vectorial nature of soliton fission in an isotropic nonlinear medium both theoretically and experimentally. As a specific example, we show that supercontinuum generation in a tapered fiber is extremely sensitive to the input state of polarization. Multiple vector solitons generated through soliton fission exhibit different states of elliptical polarization while emitting nonsolitonic radiation with complicated polarization features. Experiments performed with a tapered fiber agree with our theoretical description.

  20. Vector Magnetograph Design

    NASA Technical Reports Server (NTRS)

    Chipman, Russell A.

    1996-01-01

    This report covers work performed during the period of November 1994 through March 1996 on the design of a Space-borne Solar Vector Magnetograph. This work has been performed as part of a design team under the supervision of Dr. Mona Hagyard and Dr. Alan Gary of the Space Science Laboratory. Many tasks were performed and this report documents the results from some of those tasks, each contained in the corresponding appendix. Appendices are organized in chronological order.

  1. Laser optoacoustic tomography for the study of femtosecond laser filaments in air

    NASA Astrophysics Data System (ADS)

    Bychkov, A. S.; Cherepetskaya, E. B.; Karabutov, A. A.; Makarov, V. A.

    2016-08-01

    We propose to use optoacoustic tomography to study the characteristics of femtosecond laser filamentation in air and condensed matter. The high spatial resolution of the proposed system, which consists of an array of broadband megahertz piezoelectric elements, ensures its effectiveness, despite the attenuation of ultrasonic waves in air.

  2. Electron tomography of cells.

    PubMed

    Gan, Lu; Jensen, Grant J

    2012-02-01

    The electron microscope has contributed deep insights into biological structure since its invention nearly 80 years ago. Advances in instrumentation and methodology in recent decades have now enabled electron tomography to become the highest resolution three-dimensional (3D) imaging technique available for unique objects such as cells. Cells can be imaged either plastic-embedded or frozen-hydrated. Then the series of projection images are aligned and back-projected to generate a 3D reconstruction or 'tomogram'. Here, we review how electron tomography has begun to reveal the molecular organization of cells and how the existing and upcoming technologies promise even greater insights into structural cell biology. PMID:22082691

  3. Atom Probe Tomography 2012

    NASA Astrophysics Data System (ADS)

    Kelly, Thomas F.; Larson, David J.

    2012-08-01

    In the world of tomographic imaging, atom probe tomography (APT) occupies the high-spatial-resolution end of the spectrum. It is highly complementary to electron tomography and is applicable to a wide range of materials. The current state of APT is reviewed. Emphasis is placed on applications and data analysis as they apply to many fields of research and development including metals, semiconductors, ceramics, and organic materials. We also provide a brief review of the history and the instrumentation associated with APT and an assessment of the existing challenges in the field.

  4. Memantine Attenuates Alzheimer's Disease-Like Pathology and Cognitive Impairment.

    PubMed

    Wang, Xiaochuan; Blanchard, Julie; Grundke-Iqbal, Inge; Iqbal, Khalid

    2015-01-01

    Deficiency of protein phosphatase-2A is a key event in Alzheimer's disease. An endogenous inhibitor of protein phosphatase-2A, inhibitor-1, I1PP2A, which inhibits the phosphatase activity by interacting with its catalytic subunit protein phosphatase-2Ac, is known to be upregulated in Alzheimer's disease brain. In the present study, we overexpressed I1PP2A by intracerebroventricular injection with adeno-associated virus vector-1-I1PP2A in Wistar rats. The I1PP2A rats showed a decrease in brain protein phosphatase-2A activity, abnormal hyperphosphorylation of tau, neurodegeneration, an increase in the level of activated glycogen synthase kinase-3beta, enhanced expression of intraneuronal amyloid-beta and spatial reference memory deficit; littermates treated identically but with vector only, i.e., adeno-associated virus vector-1-enhanced GFP, served as a control. Treatment with memantine, a noncompetitive NMDA receptor antagonist which is an approved drug for treatment of Alzheimer's disease, rescued protein phosphatase-2A activity by decreasing its demethylation at Leu309 selectively and attenuated Alzheimer's disease-like pathology and cognitive impairment in adeno-associated virus vector-1-I1PP2A rats. These findings provide new clues into the possible mechanism of the beneficial therapeutic effect of memantine in Alzheimer's disease patients.

  5. Plasmonic fiber-optic vector magnetometer

    NASA Astrophysics Data System (ADS)

    Zhang, Zhaochuan; Guo, Tuan; Zhang, Xuejun; Xu, Jian; Xie, Wenping; Nie, Ming; Wu, Qiang; Guan, Bai-Ou; Albert, Jacques

    2016-03-01

    A compact fiber-optic vector magnetometer based on directional scattering between polarized plasmon waves and ferro-magnetic nanoparticles is demonstrated. The sensor configuration reported in this work uses a short section of tilted fiber Bragg grating (TFBG) coated with a nanometer scale gold film and packaged with a magnetic fluid (Fe3O4) inside a capillary. The transmission spectrum of the sensor provides a fine comb of narrowband resonances that overlap with a broader absorption of the surface plasmon resonance (SPR). The wavelength of the SPR attenuation in transmission shows high sensitivity to slight perturbations by magnetic fields, due to the strong directional scattering between the SPR attenuated cladding modes and the magnetic fluid near the fiber surface. Both the orientation (2 nm/deg) and the intensity (1.8 nm/mT) of magnetic fields can be determined unambiguously from the TFBG spectrum. Temperature cross sensitivity can be referenced out by monitoring the wavelength of the core mode resonance simultaneously.

  6. Anomalous attenuation of ultrasound in ferrofluids under the influence of a magnetic field

    NASA Technical Reports Server (NTRS)

    Isler, W. E.; Chung, D. Y.

    1978-01-01

    Ultrasonic wave propagation has been studied in a water-base ferrofluid by pulse-echo methods. A commercial box-car integrator was used to measure the change in attenuation due to an external magnetic field applied at various angles relative to the ultrasonic propagation vector. Anomalous results were obtained when the attenuation was plotted as a function of the magnetic field strength. As the field increased, the attenuation reached a maximum and then decreased to a flat minimum before it approached saturation at a field of 2 KG. This variation of attenuation with magnetic field cannot be explained from the simple picture derivable from the work of McTague on the viscosity of ferrofluids. In no case was the viscosity seen to decrease with field, nor was the oscillatory behavior observed. The results of this study were compared with the theory developed by Parsons.

  7. Vision 20/20: Magnetic resonance imaging-guided attenuation correction in PET/MRI: Challenges, solutions, and opportunities.

    PubMed

    Mehranian, Abolfazl; Arabi, Hossein; Zaidi, Habib

    2016-03-01

    Attenuation correction is an essential component of the long chain of data correction techniques required to achieve the full potential of quantitative positron emission tomography (PET) imaging. The development of combined PET/magnetic resonance imaging (MRI) systems mandated the widespread interest in developing novel strategies for deriving accurate attenuation maps with the aim to improve the quantitative accuracy of these emerging hybrid imaging systems. The attenuation map in PET/MRI should ideally be derived from anatomical MR images; however, MRI intensities reflect proton density and relaxation time properties of biological tissues rather than their electron density and photon attenuation properties. Therefore, in contrast to PET/computed tomography, there is a lack of standardized global mapping between the intensities of MRI signal and linear attenuation coefficients at 511 keV. Moreover, in standard MRI sequences, bones and lung tissues do not produce measurable signals owing to their low proton density and short transverse relaxation times. MR images are also inevitably subject to artifacts that degrade their quality, thus compromising their applicability for the task of attenuation correction in PET/MRI. MRI-guided attenuation correction strategies can be classified in three broad categories: (i) segmentation-based approaches, (ii) atlas-registration and machine learning methods, and (iii) emission/transmission-based approaches. This paper summarizes past and current state-of-the-art developments and latest advances in PET/MRI attenuation correction. The advantages and drawbacks of each approach for addressing the challenges of MR-based attenuation correction are comprehensively described. The opportunities brought by both MRI and PET imaging modalities for deriving accurate attenuation maps and improving PET quantification will be elaborated. Future prospects and potential clinical applications of these techniques and their integration in commercial

  8. Human echinococcosis: diagnostic value of computed tomography.

    PubMed

    Grabbe, E; Kern, P; Heller, M

    1981-03-01

    The diagnostic value of computed tomography was assessed in 44 patients with alveolar or cystic echinococcosis. The CT-examination was concentrated mainly on the liver, which was involved in all patients. It was extended to other organs, i.e. to lung, intra- or retroperitoneal space, bone and brain if necessary. The CT image of the liver in cystic echinococcosis was often characteristic. It showed sharply outlined masses with attenuation values similar to water. Internal structures were caused by daughter cysts. Furthermore, typical marginal calcium deposits indicated regressive changes in the host membrane. In all cases with alveolar echinococcosis in indistinct solid mass was found, often with central necrotic colliquation and plaque-like calcifications within the tumor.

  9. Vector representation of tourmaline compositions

    NASA Technical Reports Server (NTRS)

    Burt, Donald M.

    1989-01-01

    The vector method for representing mineral compositions of amphibole and mica groups is applied to the tourmaline group. Consideration is given to the methods for drawing the relevant vector diagrams, relating the exchange vectors to one another, and contouring the diagrams for constant values of Na, Ca, Li, Fe, Mg, Al, Si, and OH. The method is used to depict a wide range of possible tourmaline end-member compositions and solid solutions, starting from a single point. In addition to vector depictions of multicomponent natural tourmalines, vectors are presented for simpler systems such as (Na,Al)-tourmalines, alkali-free tourmalines, and elbaites.

  10. Sound attenuation in magnetorheological fluids

    NASA Astrophysics Data System (ADS)

    Rodríguez-López, J.; Elvira, L.; Resa, P.; Montero de Espinosa, F.

    2013-02-01

    In this work, the attenuation of ultrasonic elastic waves propagating through magnetorheological (MR) fluids is analysed as a function of the particle volume fraction and the magnetic field intensity. Non-commercial MR fluids made with iron ferromagnetic particles and two different solvents (an olive oil based solution and an Araldite-epoxy) were used. Particle volume fractions of up to 0.25 were analysed. It is shown that the attenuation of sound depends strongly on the solvent used and the volume fraction. The influence of a magnetic field up to 212 mT was studied and it was found that the sound attenuation increases with the magnetic intensity until saturation is reached. A hysteretic effect is evident once the magnetic field is removed.

  11. Scintillators for positron emission tomography

    SciTech Connect

    Moses, W.W.; Derenzo, S.E.

    1995-09-01

    Like most applications that utilize scintillators for gamma detection, Positron Emission Tomography (PET) desires materials with high light output, short decay time, and excellent stopping power that are also inexpensive, mechanically rugged, and chemically inert. Realizing that this ``ultimate`` scintillator may not exist, this paper evaluates the relative importance of these qualities and describes their impact on the imaging performance of PET. The most important PET scintillator quality is the ability to absorb 511 keV photons in a small volume, which affects the spatial resolution of the camera. The dominant factor is a short attenuation length ({le} 1.5 cm is required), although a high photoelectric fraction is also important (> 30% is desired). The next most important quality is a short decay time, which affects both the dead time and the coincidence timing resolution. Detection rates for single 511 keV photons can be extremely high, so decay times {le} 500 ns are essential to avoid dead time losses. In addition, positron annihilations are identified by time coincidence so {le}5 ns fwhm coincidence pair timing resolution is required to identify events with narrow coincidence windows, reducing contamination due to accidental coincidences. Current trends in PET cameras are toward septaless, ``fully-3D`` cameras, which have significantly higher count rates than conventional 2-D cameras and so place higher demands on scintillator decay time. Light output affects energy resolution, and thus the ability of the camera to identify and reject events where the initial 511 keV photon has undergone Compton scatter in the patient. The scatter to true event fraction is much higher in fully-3D cameras than in 2-D cameras, so future PET cameras would benefit from scintillators with a 511 keV energy resolution < 10--12% fwhm.

  12. Retinal Optical Coherence Tomography Imaging

    NASA Astrophysics Data System (ADS)

    Drexler, Wolfgang; Fujimoto, James G.

    The eye is essentially transparent, transmitting light with only minimal optical attenuation and scattering providing easy optical access to the anterior segment as well as the retina. For this reason, ophthalmic and especially retinal imaging has been not only the first but also most successful clinical application for optical coherence tomography (OCT). This chapter focuses on the development of OCT technology for retinal imaging. OCT has significantly improved the potential for early diagnosis, understanding of retinal disease pathogenesis, as well as monitoring disease progression and response to therapy. Development of ultrabroad bandwidth light sources and high-speed detection techniques has enabled significant improvements in ophthalmic OCT imaging performance, demonstrating the potential of three-dimensional, ultrahigh-resolution OCT (UHR OCT) to perform noninvasive optical biopsy of the living human retina, i.e., the in vivo visualization of microstructural, intraretinal morphology in situ approaching the resolution of conventional histopathology. Significant improvements in axial resolution and speed not only enable three-dimensional rendering of retinal volumes but also high-definition, two-dimensional tomograms, topographic thickness maps of all major intraretinal layers, as well as volumetric quantification of pathologic intraretinal changes. These advances in OCT technology have also been successfully applied in several animal models of retinal pathologies. The development of light sources emitting at alternative wavelengths, e.g., around #1,060 nm, not only enabled three-dimensional OCT imaging with enhanced choroidal visualization but also improved OCT performance in cataract patients due to reduced scattering losses in this wavelength region. Adaptive optics using deformable mirror technology, with unique high stroke to correct higher-order ocular aberrations, with specially designed optics to compensate chromatic aberration of the human eye, in

  13. Vector ecology of equine piroplasmosis.

    PubMed

    Scoles, Glen A; Ueti, Massaro W

    2015-01-01

    Equine piroplasmosis is a disease of Equidae, including horses, donkeys, mules, and zebras, caused by either of two protozoan parasites, Theileria equi or Babesia caballi. These parasites are biologically transmitted between hosts via tick vectors, and although they have inherent differences they are categorized together because they cause similar pathology and have similar morphologies, life cycles, and vector relationships. To complete their life cycle, these parasites must undergo a complex series of developmental events, including sexual-stage development in their tick vectors. Consequently, ticks are the definitive hosts as well as vectors for these parasites, and the vector relationship is restricted to a few competent tick species. Because the vector relationship is critical to the epidemiology of these parasites, we highlight current knowledge of the vector ecology of these tick-borne equine pathogens, emphasizing tick transmissibility and potential control strategies to prevent their spread.

  14. Holography and tomography

    SciTech Connect

    Howells, M.

    1997-02-01

    This session includes a collection of outlines of pertinent information, diagrams, graphs, electron micrographs, and color photographs pertaining to historical aspects and recent advances in the development of X-ray Gabor Holography. Many of the photographs feature or pertain to instrumentation used in holography, tomography, and cryo-holography.

  15. Dental Optical Coherence Tomography

    PubMed Central

    Hsieh, Yao-Sheng; Ho, Yi-Ching; Lee, Shyh-Yuan; Chuang, Ching-Cheng; Tsai, Jui-che; Lin, Kun-Feng; Sun, Chia-Wei

    2013-01-01

    This review paper describes the applications of dental optical coherence tomography (OCT) in oral tissue images, caries, periodontal disease and oral cancer. The background of OCT, including basic theory, system setup, light sources, spatial resolution and system limitations, is provided. The comparisons between OCT and other clinical oral diagnostic methods are also discussed. PMID:23857261

  16. SEISMIC ATTENUATION FOR RESERVOIR CHARACTERIZATION

    SciTech Connect

    Joel Walls; M.T. Taner; Naum Derzhi; Gary Mavko; Jack Dvorkin

    2003-04-01

    In this report we will show results of seismic and well log derived attenuation attributes from a deep water Gulf of Mexico data set. This data was contributed by Burlington Resources and Seitel Inc. The data consists of ten square kilometers of 3D seismic data and three well penetrations. We have computed anomalous seismic absorption attributes on the seismic data and have computed Q from the well log curves. The results show a good correlation between the anomalous absorption (attenuation) attributes and the presence of gas as indicated by well logs.

  17. Thrust vectoring systems

    NASA Technical Reports Server (NTRS)

    King, H. J.; Schnelker, D.; Ward, J. W.; Dulgeroff, C.; Vahrenkamp, R.

    1972-01-01

    The design, fabrication, and testing of thrust vectorable ion optical systems capable of controlling the thrust direction from both 5- and 30-cm diameter ion thrusters is described. Both systems are capable of greater than 10 deg thrust deflection in any azimuthal direction. The 5-cm system is electrostatic and hence has a short response time and minimal power consumption. It has recently been tested for more than 7500 hours on an operational thruster. The 30-cm system is mechanical, has a response time of the order of 1 min, and consumes less than 0.3% of the total system input power at full deflection angle.

  18. Vector potential photoelectron microscopy

    SciTech Connect

    Browning, R.

    2011-10-15

    A new class of electron microscope has been developed for the chemical microanalysis of a wide range of real world samples using photoelectron spectroscopy. Highly structured, three-dimensional samples, such as fiber mats and fracture surfaces can be imaged, as well as insulators and magnetic materials. The new microscope uses the vector potential field from a solenoid magnet as a spatial reference for imaging. A prototype instrument has demonstrated imaging of uncoated silk, magnetic steel wool, and micron-sized single strand tungsten wires.

  19. Neural networks for calibration tomography

    NASA Technical Reports Server (NTRS)

    Decker, Arthur

    1993-01-01

    Artificial neural networks are suitable for performing pattern-to-pattern calibrations. These calibrations are potentially useful for facilities operations in aeronautics, the control of optical alignment, and the like. Computed tomography is compared with neural net calibration tomography for estimating density from its x-ray transform. X-ray transforms are measured, for example, in diffuse-illumination, holographic interferometry of fluids. Computed tomography and neural net calibration tomography are shown to have comparable performance for a 10 degree viewing cone and 29 interferograms within that cone. The system of tomography discussed is proposed as a relevant test of neural networks and other parallel processors intended for using flow visualization data.

  20. The meaning of interior tomography.

    PubMed

    Wang, Ge; Yu, Hengyong

    2013-08-21

    The classic imaging geometry for computed tomography is for the collection of un-truncated projections and the reconstruction of a global image, with the Fourier transform as the theoretical foundation that is intrinsically non-local. Recently, interior tomography research has led to theoretically exact relationships between localities in the projection and image spaces and practically promising reconstruction algorithms. Initially, interior tomography was developed for x-ray computed tomography. Then, it was elevated to have the status of a general imaging principle. Finally, a novel framework known as 'omni-tomography' is being developed for a grand fusion of multiple imaging modalities, allowing tomographic synchrony of diversified features.

  1. COMPUTED TOMOGRAPHY OF TOOTH RESORPTION IN CATS.

    PubMed

    Lang, Linda G; Wilkinson, Thomas E; White, Tammy L; Farnsworth, Raelynn K; Potter, Kathleen A

    2016-09-01

    Tooth resorption is the most common dental disease in cats and can be a source of oral pain. The current clinical gold standard for diagnosis includes a combination of oral exam and dental radiography, however early lesions are not always detected. Computed tomography (CT) of the skull, including the dental arches, is a commonly performed diagnostic procedure, however the appearance of tooth resorption on CT and the diagnostic ability of CT to detect tooth resorption have not been evaluated. The purpose of this prospective, descriptive, diagnostic accuracy study was to characterize the CT appearance of tooth resorption in a sample of affected cats and to evaluate the sensitivity and specificity of CT for tooth resorption compared to the clinical gold standard of oral exam and intraoral dental radiography. Twenty-eight cat cadaver specimens were recruited for inclusion. Each specimen was evaluated using oral exam, intraoral dental radiography, and computed tomography (four different slice thicknesses). Each tooth was evaluated for the presence or absence of tooth resorption. Teeth with lesions and a subset of normal teeth were evaluated with histopathology. On CT, tooth resorption appeared as irregularly marginated hypoattenuating defects in the mineral attenuating tooth components, most commonly involving the root or cementoenamel junction. Sensitivity for CT detection of tooth resorption was fair to poor (42.2-57.7%) and specificity was good to excellent (92.8-96.3%). Findings from this study indicated that CT has high specificity but low sensitivity for detection of tooth resorption in cats.

  2. Attenuation correction for freely moving small animal brain PET studies based on a virtual scanner geometry

    NASA Astrophysics Data System (ADS)

    Angelis, G. I.; Kyme, A. Z.; Ryder, W. J.; Fulton, R. R.; Meikle, S. R.

    2014-10-01

    Attenuation correction in positron emission tomography brain imaging of freely moving animals is a very challenging problem since the torso of the animal is often within the field of view and introduces a non negligible attenuating factor that can degrade the quantitative accuracy of the reconstructed images. In the context of unrestrained small animal imaging, estimation of the attenuation correction factors without the need for a transmission scan is highly desirable. An attractive approach that avoids the need for a transmission scan involves the generation of the hull of the animal’s head based on the reconstructed motion corrected emission images. However, this approach ignores the attenuation introduced by the animal’s torso. In this work, we propose a virtual scanner geometry which moves in synchrony with the animal’s head and discriminates between those events that traversed only the animal’s head (and therefore can be accurately compensated for attenuation) and those that might have also traversed the animal’s torso. For each recorded pose of the animal’s head a new virtual scanner geometry is defined and therefore a new system matrix must be calculated leading to a time-varying system matrix. This new approach was evaluated on phantom data acquired on the microPET Focus 220 scanner using a custom-made phantom and step-wise motion. Results showed that when the animal’s torso is within the FOV and not appropriately accounted for during attenuation correction it can lead to bias of up to 10% . Attenuation correction was more accurate when the virtual scanner was employed leading to improved quantitative estimates (bias < 2%), without the need to account for the attenuation introduced by the extraneous compartment. Although the proposed method requires increased computational resources, it can provide a reliable approach towards quantitatively accurate attenuation correction for freely moving animal studies.

  3. Flagella Overexpression Attenuates Salmonella Pathogenesis

    PubMed Central

    Yang, Xinghong; Thornburg, Theresa; Suo, Zhiyong; Jun, SangMu; Robison, Amanda; Li, Jinquan; Lim, Timothy; Cao, Ling; Hoyt, Teri; Avci, Recep; Pascual, David W.

    2012-01-01

    Flagella are cell surface appendages involved in a number of bacterial behaviors, such as motility, biofilm formation, and chemotaxis. Despite these important functions, flagella can pose a liability to a bacterium when serving as potent immunogens resulting in the stimulation of the innate and adaptive immune systems. Previous work showing appendage overexpression, referred to as attenuating gene expression (AGE), was found to enfeeble wild-type Salmonella. Thus, this approach was adapted to discern whether flagella overexpression could induce similar attenuation. To test its feasibility, flagellar filament subunit FliC and flagellar regulon master regulator FlhDC were overexpressed in Salmonella enterica serovar Typhimurium wild-type strain H71. The results show that the expression of either FliC or FlhDC alone, and co-expression of the two, significantly attenuates Salmonella. The flagellated bacilli were unable to replicate within macrophages and thus were not lethal to mice. In-depth investigation suggests that flagellum-mediated AGE was due to the disruptive effects of flagella on the bacterial membrane, resulting in heightened susceptibilities to hydrogen peroxide and bile. Furthermore, flagellum-attenuated Salmonella elicited elevated immune responses to Salmonella presumably via FliC’s adjuvant effect and conferred robust protection against wild-type Salmonella challenge. PMID:23056473

  4. SEISMIC ATTENUATION FOR RESERVOIR CHARACTERIZATION

    SciTech Connect

    Joel Walls; M.T. Taner; Gary Mavko; Jack Dvorkin

    2002-07-01

    In fully-saturated rock and at ultrasonic frequencies, the microscopic squirt flow induced between the stiff and soft parts of the pore space by an elastic wave is responsible for velocity-frequency dispersion and attenuation. In the seismic frequency range, it is the macroscopic cross-flow between the stiffer and softer parts of the rock. We use the latter hypothesis to introduce simple approximate equations for velocity-frequency dispersion and attenuation in a fully water saturated reservoir. The equations are based on the assumption that in heterogeneous rock and at a very low frequency, the effective elastic modulus of the fully-saturated rock can be estimated by applying a fluid substitution procedure to the averaged (upscaled) dry frame whose effective porosity is the mean porosity and the effective elastic modulus is the Backus-average (geometric mean) of the individual dry-frame elastic moduli of parts of the rock. At a higher frequency, the effective elastic modulus of the saturated rock is the Backus-average of the individual fully-saturated-rock elastic moduli of parts of the rock. The difference between the effective elastic modulus calculated separately by these two methods determines the velocity-frequency dispersion. The corresponding attenuation is calculated from this dispersion by using (e.g.) the standard linear solid attenuation model.

  5. Stormwater Attenuation by Green Roofs

    NASA Astrophysics Data System (ADS)

    Sims, A.; O'Carroll, D. M.; Robinson, C. E.; Smart, C. C.

    2014-12-01

    Innovative municipal stormwater management technologies are urgently required in urban centers. Inadequate stormwater management can lead to excessive flooding, channel erosion, decreased stream baseflows, and degraded water quality. A major source of urban stormwater is unused roof space. Green roofs can be used as a stormwater management tool to reduce roof generated stormwater and generally improve the quality of runoff. With recent legislation in some North American cities, including Toronto, requiring the installation of green roofs on large buildings, research on the effectiveness of green roofs for stormwater management is important. This study aims to assess the hydrologic response of an extensive sedum green roof in London, Ontario, with emphasis on the response to large precipitation events that stress municipal stormwater infrastructure. A green roof rapidly reaches field capacity during large storm events and can show significantly different behavior before and after field capacity. At field capacity a green roof has no capillary storage left for retention of stormwater, but may still be an effective tool to attenuate peak runoff rates by transport through the green roof substrate. The attenuation of green roofs after field capacity is linked to gravity storage, where gravity storage is the water that is temporarily stored and can drain freely over time after field capacity has been established. Stormwater attenuation of a modular experimental green roof is determined from water balance calculations at 1-minute intervals. Data is used to evaluate green roof attenuation and the impact of field capacity on peak flow rates and gravity storage. In addition, a numerical model is used to simulate event based stormwater attenuation. This model is based off of the Richards equation and supporting theory of multiphase flow through porous media.

  6. Attenuation of the LG wave across the contiguous United States

    NASA Astrophysics Data System (ADS)

    Gallegos, Andrea Christina

    Lg waveforms recorded by EarthScope's Transportable Array (TA) are used to estimate Lg Q in the contiguous United States. Shear-wave crustal attenuation is calculated based on Lg spectral amplitudes filtered at several narrow bandwidths with central frequencies of 0.5, 1, 2, and 3 Hz. The two-station and reverse two-station techniques were used to calculate these Q values. 349 crustal earthquakes occurring from 2004 to 2015 and ranging from magnitude 3 to magnitude 6 were used in this study. The results show that the western U.S., an area ranging from 25°N to 50°N and from 125°W to 105°W is a primarily low Q (high attenuation) area, with isolated high Q (low attenuation) regions corresponding to the Colorado Plateau, the Rocky Mountains, the Columbia Plateau, and the Sierra Nevada Mountains. The central and eastern U.S., an area ranging from 105°W to 60°W, is found to be high Q overall, with isolated low Q areas along ft... Coastal Plain, the Reelfoot Rift, and the Wisconsin-Minnesota border region. A positive correlation between high heat flow, the presence of thick sediments, recent tectonic activity, and low Q is observed. Areas with low heat flow, thin sediment cover, and no recent tectonic activity were observed to have consistently high Q. Lg Q was found to have a power law type frequency dependence throughout the U.S., with an increase in central frequency resulting in an increase in Q. At higher frequencies, crustal attenuation is dominated by scattering. These new Lg tomography models are based on an unprecedented amount and coverage of data, providing improved accuracy and detail. This increase in detail can improve high frequency ground motion predictions of future large earthquakes for more accurate hazard assessment and improve overall understanding of the structure and assemblage of the contiguous United States.

  7. Strong Lg-wave attenuation in the Middle East continental collision orogenic belt

    NASA Astrophysics Data System (ADS)

    Zhao, Lian-Feng; Xie, Xiao-Bi

    2016-04-01

    Using Lg-wave Q tomography, we construct a broadband crustal attenuation model for the Middle East. The QLg images reveal a relationship between attenuation and geological structures. Strong attenuation is found in the continental collision orogenic belt that extends from the Turkish and Iranian plateau to the Pamir plateau. We investigate the frequency dependence of QLg in different geologic formations. The results illustrate that QLg values generally increase with increasing frequency but exhibit complex relationships both with frequency and between regions. An average QLg value between 0.2 and 2.0 Hz, QLg (0.2-2.0 Hz), may be a critical index for crustal attenuation and is used to infer the regional geology. Low-QLg anomalies are present in the eastern Turkish plateau and correlate well with low Pn-velocities and Cenozoic volcanic activity, thus indicating possible partial melting within the crust in this region. Very strong attenuation is also observed in central Iran, the Afghanistan block, and the southern Caspian Sea. This in line with the previously observed high crustal temperature, high-conductivity layers, and thick marine sediments in these areas, suggests the high Lg attenuation is caused by abnormally high tectonic and thermal activities.

  8. Hyperbolic-symmetry vector fields.

    PubMed

    Gao, Xu-Zhen; Pan, Yue; Cai, Meng-Qiang; Li, Yongnan; Tu, Chenghou; Wang, Hui-Tian

    2015-12-14

    We present and construct a new kind of orthogonal coordinate system, hyperbolic coordinate system. We present and design a new kind of local linearly polarized vector fields, which is defined as the hyperbolic-symmetry vector fields because the points with the same polarization form a series of hyperbolae. We experimentally demonstrate the generation of such a kind of hyperbolic-symmetry vector optical fields. In particular, we also study the modified hyperbolic-symmetry vector optical fields with the twofold and fourfold symmetric states of polarization when introducing the mirror symmetry. The tight focusing behaviors of these vector fields are also investigated. In addition, we also fabricate micro-structures on the K9 glass surfaces by several tightly focused (modified) hyperbolic-symmetry vector fields patterns, which demonstrate that the simulated tightly focused fields are in good agreement with the fabricated micro-structures.

  9. Polarised light sheet tomography.

    PubMed

    Reidt, Sascha L; O'Brien, Daniel J; Wood, Kenneth; MacDonald, Michael P

    2016-05-16

    The various benefits of light sheet microscopy have made it a widely used modality for capturing three-dimensional images. It is mostly used for fluorescence imaging, but recently another technique called light sheet tomography solely relying on scattering was presented. The method was successfully applied to imaging of plant roots in transparent soil, but is limited when it comes to more turbid samples. This study presents a polarised light sheet tomography system and its advantages when imaging in highly scattering turbid media. The experimental configuration is guided by Monte Carlo radiation transfer methods, which model the propagation of a polarised light sheet in the sample. Images of both reflecting and absorbing phantoms in a complex collagenous matrix were acquired, and the results for different polarisation configurations are compared. Focus scanning methods were then used to reduce noise and produce three-dimensional reconstructions of absorbing targets.

  10. Controllable tomography phase microscopy

    NASA Astrophysics Data System (ADS)

    Xiu, Peng; Zhou, Xin; Kuang, Cuifang; Xu, Yingke; Liu, Xu

    2015-03-01

    Tomography phase microscopy (TPM) is a new microscopic method that can quantitatively yield the volumetric 3D distribution of a sample's refractive index (RI), which is significant for cell biology research. In this paper, a controllable TPM system is introduced. In this system a circulatory phase-shifting method and piezoelectric ceramic are used which enable the TPM system to record the 3D RI distribution at a more controllable speed, from 1 to 40 fps, than in the other TPM systems reported. The resolution of the RI distribution obtained by this controllable TPM is much better than that in images recorded by phase contrast microscopy and interference tomography microscopy. The realization of controllable TPM not only allows for the application of TPM to the measurement of kinds of RI sample, but also contributes to academic and technological support for the practical use of TPM.

  11. Computed tomography in neurocysticercosis.

    PubMed Central

    Minguetti, G; Ferreira, M V

    1983-01-01

    Neurocysticercosis is a major public health problem in developing countries. Before computed tomography became available its diagnosis was very restricted and the conventional diagnostic methods were unreliable. It also was frequently necessary to submit patients to costly and dangerous surgical procedures to confirm the precise nature of the disease. One hundred and seventy-one patients with neurocysticercosis were evaluated by computed tomography. The diagnostic findings of the different types of lesions produced by the larva of the parasite (Taenia solium) in the central nervous system, and the advantages of CT in the diagnosis of this clinical entity are described, as well as the main signs and symptoms of the patients referred for examination. The effect of corticosteroids in the acute stages of the disease and the changes they provoke in the CT images are described. Images PMID:6644318

  12. Polarised light sheet tomography.

    PubMed

    Reidt, Sascha L; O'Brien, Daniel J; Wood, Kenneth; MacDonald, Michael P

    2016-05-16

    The various benefits of light sheet microscopy have made it a widely used modality for capturing three-dimensional images. It is mostly used for fluorescence imaging, but recently another technique called light sheet tomography solely relying on scattering was presented. The method was successfully applied to imaging of plant roots in transparent soil, but is limited when it comes to more turbid samples. This study presents a polarised light sheet tomography system and its advantages when imaging in highly scattering turbid media. The experimental configuration is guided by Monte Carlo radiation transfer methods, which model the propagation of a polarised light sheet in the sample. Images of both reflecting and absorbing phantoms in a complex collagenous matrix were acquired, and the results for different polarisation configurations are compared. Focus scanning methods were then used to reduce noise and produce three-dimensional reconstructions of absorbing targets. PMID:27409945

  13. Brain Swelling and Loss of Gray and White Matter Differentiation in Human Postmortem Cases by Computed Tomography

    PubMed Central

    Shirota, Go; Gonoi, Wataru; Ishida, Masanori; Okuma, Hidemi; Shintani, Yukako; Abe, Hiroyuki; Takazawa, Yutaka; Ikemura, Masako; Fukayama, Masashi; Ohtomo, Kuni

    2015-01-01

    The purpose of this study was to evaluate the brain by postmortem computed tomography (PMCT) versus antemortem computed tomography (AMCT) using brains from the same patients. We studied 36 nontraumatic subjects who underwent AMCT, PMCT, and pathological autopsy in our hospital between April 2009 and December 2013. PMCT was performed within 20 h after death, followed by pathological autopsy including the brain. Autopsy confirmed the absence of intracranial disorders that might be related to the cause of death or might affect measurements in our study. Width of the third ventricle, width of the central sulcus, and attenuation in gray matter (GM) and white matter (WM) from the same area of the basal ganglia, centrum semiovale, and high convexity were statistically compared between AMCT and PMCT. Both the width of the third ventricle and the central sulcus were significantly shorter in PMCT than in AMCT (P < 0.0001). GM attenuation increased after death at the level of the centrum semiovale and high convexity, but the differences were not statistically significant considering the differences in attenuation among the different computed tomography scanners. WM attenuation significantly increased after death at all levels (P<0.0001). The differences were larger than the differences in scanners. GM/WM ratio of attenuation was significantly lower by PMCT than by AMCT at all levels (P<0.0001). PMCT showed an increase in WM attenuation, loss of GM–WM differentiation, and brain swelling, evidenced by a decrease in the size of ventricles and sulci. PMID:26618492

  14. Computed tomography status

    SciTech Connect

    Hansche, B.D.

    1983-01-01

    Computed tomography (CT) is a relatively new radiographic technique which has become widely used in the medical field, where it is better known as computerized axial tomographic (CAT) scanning. This technique is also being adopted by the industrial radiographic community, although the greater range of densities, variation in samples sizes, plus possible requirement for finer resolution make it difficult to duplicate the excellent results that the medical scanners have achieved.

  15. Experimental adaptive Bayesian tomography

    NASA Astrophysics Data System (ADS)

    Kravtsov, K. S.; Straupe, S. S.; Radchenko, I. V.; Houlsby, N. M. T.; Huszár, F.; Kulik, S. P.

    2013-06-01

    We report an experimental realization of an adaptive quantum state tomography protocol. Our method takes advantage of a Bayesian approach to statistical inference and is naturally tailored for adaptive strategies. For pure states, we observe close to N-1 scaling of infidelity with overall number of registered events, while the best nonadaptive protocols allow for N-1/2 scaling only. Experiments are performed for polarization qubits, but the approach is readily adapted to any dimension.

  16. Computed Tomography Status

    DOE R&D Accomplishments Database

    Hansche, B. D.

    1983-01-01

    Computed tomography (CT) is a relatively new radiographic technique which has become widely used in the medical field, where it is better known as computerized axial tomographic (CAT) scanning. This technique is also being adopted by the industrial radiographic community, although the greater range of densities, variation in samples sizes, plus possible requirement for finer resolution make it difficult to duplicate the excellent results that the medical scanners have achieved.

  17. Tutorial on photoacoustic tomography

    NASA Astrophysics Data System (ADS)

    Zhou, Yong; Yao, Junjie; Wang, Lihong V.

    2016-06-01

    Photoacoustic tomography (PAT) has become one of the fastest growing fields in biomedical optics. Unlike pure optical imaging, such as confocal microscopy and two-photon microscopy, PAT employs acoustic detection to image optical absorption contrast with high-resolution deep into scattering tissue. So far, PAT has been widely used for multiscale anatomical, functional, and molecular imaging of biological tissues. We focus on PAT's basic principles, major implementations, imaging contrasts, and recent applications.

  18. Compton tomography system

    DOEpatents

    Grubsky, Victor; Romanoov, Volodymyr; Shoemaker, Keith; Patton, Edward Matthew; Jannson, Tomasz

    2016-02-02

    A Compton tomography system comprises an x-ray source configured to produce a planar x-ray beam. The beam irradiates a slice of an object to be imaged, producing Compton-scattered x-rays. The Compton-scattered x-rays are imaged by an x-ray camera. Translation of the object with respect to the source and camera or vice versa allows three-dimensional object imaging.

  19. 3-D seismic velocity and attenuation structures in the geothermal field

    SciTech Connect

    Nugraha, Andri Dian; Syahputra, Ahmad; Fatkhan,; Sule, Rachmat

    2013-09-09

    We conducted delay time tomography to determine 3-D seismic velocity structures (Vp, Vs, and Vp/Vs ratio) using micro-seismic events in the geothermal field. The P-and S-wave arrival times of these micro-seismic events have been used as input for the tomographic inversion. Our preliminary seismic velocity results show that the subsurface condition of geothermal field can be fairly delineated the characteristic of reservoir. We then extended our understanding of the subsurface physical properties through determining of attenuation structures (Qp, Qs, and Qs/Qp ratio) using micro-seismic waveform. We combined seismic velocities and attenuation structures to get much better interpretation of the reservoir characteristic. Our preliminary attanuation structures results show reservoir characterization can be more clearly by using the 3-D attenuation model of Qp, Qs, and Qs/Qp ratio combined with 3-D seismic velocity model of Vp, Vs, and Vp/Vs ratio.

  20. Polychromatic diffraction contrast tomography

    SciTech Connect

    King, A.; Reischig, P.; Adrien, J.; Peetermans, S.; Ludwig, W.

    2014-11-15

    This tutorial review introduces the use of polychromatic radiation for 3D grain mapping using X-ray diffraction contrast tomography. The objective is to produce a 3D map of the grain shapes and orientations within a bulk, millimeter-sized polycrystalline sample. The use of polychromatic radiation enables the standard synchrotron X-ray technique to be applied in a wider range of contexts: 1) Using laboratory X-ray sources allows a much wider application of the diffraction contrast tomography technique. 2) Neutron sources allow large samples, or samples containing high Z elements to be studied. 3) Applied to synchrotron sources, smaller samples may be treated, or faster measurements may be possible. Challenges and particularities in the data acquisition and processing, and the limitations of the different variants, are discussed. - Highlights: • We present a tutorial review of polychromatic diffraction contrast tomography techniques. • The use of polychromatic radiation allows the standard synchrotron DCT technique to be extended to a range of other sources. • The characteristics and limitations of all variants of the techniques are derived, discussed and compared. • Examples using laboratory X-ray and cold neutron radiation are presented. • Suggestions for the future development of these techniques are presented.

  1. Ocean acoustic reverberation tomography.

    PubMed

    Dunn, Robert A

    2015-12-01

    Seismic wide-angle imaging using ship-towed acoustic sources and networks of ocean bottom seismographs is a common technique for exploring earth structure beneath the oceans. In these studies, the recorded data are dominated by acoustic waves propagating as reverberations in the water column. For surveys with a small receiver spacing (e.g., <10 km), the acoustic wave field densely samples properties of the water column over the width of the receiver array. A method, referred to as ocean acoustic reverberation tomography, is developed that uses the travel times of direct and reflected waves to image ocean acoustic structure. Reverberation tomography offers an alternative approach for determining the structure of the oceans and advancing the understanding of ocean heat content and mixing processes. The technique has the potential for revealing small-scale ocean thermal structure over the entire vertical height of the water column and along long survey profiles or across three-dimensional volumes of the ocean. For realistic experimental geometries and data noise levels, the method can produce images of ocean sound speed on a smaller scale than traditional acoustic tomography. PMID:26723303

  2. Ocean acoustic reverberation tomography.

    PubMed

    Dunn, Robert A

    2015-12-01

    Seismic wide-angle imaging using ship-towed acoustic sources and networks of ocean bottom seismographs is a common technique for exploring earth structure beneath the oceans. In these studies, the recorded data are dominated by acoustic waves propagating as reverberations in the water column. For surveys with a small receiver spacing (e.g., <10 km), the acoustic wave field densely samples properties of the water column over the width of the receiver array. A method, referred to as ocean acoustic reverberation tomography, is developed that uses the travel times of direct and reflected waves to image ocean acoustic structure. Reverberation tomography offers an alternative approach for determining the structure of the oceans and advancing the understanding of ocean heat content and mixing processes. The technique has the potential for revealing small-scale ocean thermal structure over the entire vertical height of the water column and along long survey profiles or across three-dimensional volumes of the ocean. For realistic experimental geometries and data noise levels, the method can produce images of ocean sound speed on a smaller scale than traditional acoustic tomography.

  3. Ultrasonic Lamb wave tomography

    NASA Astrophysics Data System (ADS)

    Leonard, Kevin R.; Malyarenko, Eugene V.; Hinders, Mark K.

    2002-12-01

    Nondestructive evaluation (NDE) of aerospace structures using traditional methods is a complex, time-consuming process critical to maintaining mission readiness and flight safety. Limited access to corrosion-prone structure and the restricted applicability of available NDE techniques for the detection of hidden corrosion or other damage often compound the challenge. In this paper we discuss our recent work using ultrasonic Lamb wave tomography to address this pressing NDE technology need. Lamb waves are ultrasonic guided waves, which allow large sections of aircraft structures to be rapidly inspected for structural flaws such as disbonds, corrosion and delaminations. Because the velocity of Lamb waves depends on thickness, for example, the travel times of the fundamental Lamb modes can be converted into a thickness map of the inspection region. However, extracting quantitative information from Lamb wave data has always involved highly trained personnel with a detailed knowledge of mechanical waveguide physics. Our work focuses on tomographic reconstruction to produce quantitative maps that can be easily interpreted by technicians or fed directly into structural integrity and lifetime prediction codes. Laboratory measurements discussed here demonstrate that Lamb wave tomography using a square perimeter array of transducers with algebraic reconstruction tomography is appropriate for detecting flaws in aircraft materials. The speed and fidelity of the reconstruction algorithms as well as practical considerations for person-portable array-based systems are discussed in this paper.

  4. Automated tissue classification of intracardiac optical coherence tomography images (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Gan, Yu; Tsay, David; Amir, Syed B.; Marboe, Charles C.; Hendon, Christine P.

    2016-03-01

    Remodeling of the myocardium is associated with increased risk of arrhythmia and heart failure. Our objective is to automatically identify regions of fibrotic myocardium, dense collagen, and adipose tissue, which can serve as a way to guide radiofrequency ablation therapy or endomyocardial biopsies. Using computer vision and machine learning, we present an automated algorithm to classify tissue compositions from cardiac optical coherence tomography (OCT) images. Three dimensional OCT volumes were obtained from 15 human hearts ex vivo within 48 hours of donor death (source, NDRI). We first segmented B-scans using a graph searching method. We estimated the boundary of each region by minimizing a cost function, which consisted of intensity, gradient, and contour smoothness. Then, features, including texture analysis, optical properties, and statistics of high moments, were extracted. We used a statistical model, relevance vector machine, and trained this model with abovementioned features to classify tissue compositions. To validate our method, we applied our algorithm to 77 volumes. The datasets for validation were manually segmented and classified by two investigators who were blind to our algorithm results and identified the tissues based on trichrome histology and pathology. The difference between automated and manual segmentation was 51.78 +/- 50.96 μm. Experiments showed that the attenuation coefficients of dense collagen were significantly different from other tissue types (P < 0.05, ANOVA). Importantly, myocardial fibrosis tissues were different from normal myocardium in entropy and kurtosis. The tissue types were classified with an accuracy of 84%. The results show good agreements with histology.

  5. Covariant Lyapunov vectors

    NASA Astrophysics Data System (ADS)

    Ginelli, Francesco; Chaté, Hugues; Livi, Roberto; Politi, Antonio

    2013-06-01

    Recent years have witnessed a growing interest in covariant Lyapunov vectors (CLVs) which span local intrinsic directions in the phase space of chaotic systems. Here, we review the basic results of ergodic theory, with a specific reference to the implications of Oseledets’ theorem for the properties of the CLVs. We then present a detailed description of a ‘dynamical’ algorithm to compute the CLVs and show that it generically converges exponentially in time. We also discuss its numerical performance and compare it with other algorithms presented in the literature. We finally illustrate how CLVs can be used to quantify deviations from hyperbolicity with reference to a dissipative system (a chain of Hénon maps) and a Hamiltonian model (a Fermi-Pasta-Ulam chain). This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘Lyapunov analysis: from dynamical systems theory to applications’.

  6. Solar imaging vector magnetograph

    NASA Technical Reports Server (NTRS)

    Canfield, Richard C.

    1993-01-01

    This report describes an instrument which has been constructed at the University of Hawaii to make observations of the magnetic field in solar active regions. Detailed knowledge of active region magnetic structures is crucial to understanding many solar phenomena, because the magnetic field both defines the morphology of structures seen in the solar atmosphere and is the apparent energy source for solar flares. The new vector magnetograph was conceived in response to a perceived discrepancy between the capabilities of X ray imaging telescopes to be operating during the current solar maximum and those of existing magnetographs. There were no space-based magnetographs planned for this period; the existing ground-based instruments variously suffered from lack of sensitivity, poor time resolution, inadequate spatial resolution or unreliable sites. Yet the studies of flares and their relationship to the solar corona planned for the 1991-1994 maximum absolutely required high quality vector magnetic field measurements. By 'vector' measurements we mean that the observation attempts to deduce the complete strength and direction of the field at the measurement site, rather than just the line of sight component as obtained by a traditional longitudinal magnetograph. Knowledge of the vector field permits one to calculate photospheric electric currents, which might play a part in heating the corona, and to calculate energy stored in coronal magnetic fields as the result of such currents. Information about the strength and direction of magnetic fields in the solar atmosphere can be obtained in a number of ways, but quantitative data is best obtained by observing Zeeman-effect polarization in solar spectral lines. The technique requires measuring the complete state of polarization at one or more wavelengths within a magnetically sensitive line of the solar spectrum. This measurement must be done for each independent spatial point for which one wants magnetic field data. All the

  7. Limits of Ultra-Low Dose CT Attenuation Correction for PET/CT.

    PubMed

    Xia, Ting; Alessio, Adam M; Kinahan, Paul E

    2010-01-29

    We present an analysis of the effects of ultra-low dose X-ray computerized tomography (CT) based attenuation correction for positron emission tomography (PET). By ultra low dose we mean less than approximately 5 mAs or 0.5 mSv total effective whole body dose. The motivation is the increased interest in using respiratory motion information acquired during the CT scan for both phase-matched CT-based attenuation correction and for motion estimation. Since longer duration CT scans are desired, radiation dose to the patient can be a limiting factor. In this study we evaluate the impact of reducing photon flux rates in the CT data on the reconstructed PET image by using the CATSIM simulation tool for the CT component and the ASIM simulation tool for the PET component. The CT simulation includes effects of the x-ray tube spectra, beam conditioning, bowtie filter, detector noise, and bean hardening correction. The PET simulation includes the effect of attenuation and photon counting. Noise and bias in the PET image were evaluated from multiple realizations of test objects. We show that techniques can be used to significantly reduce the mAs needed for CT based attenuation correction if the CT is not used for diagnostic purposes. The limiting factor, however, is not the noise in the CT image but rather the bias introduced by CT sinogram elements with no detected flux. These results constrain the methods that can be used to lower CT dose in a manner suitable for attenuation correction of PET data. We conclude that ultra-low-dose CT for attenuation correction of PET data is feasible with current PET/CT scanners.

  8. Diffraction computed tomography reveals the inner structure of complex biominerals

    NASA Astrophysics Data System (ADS)

    Leemreize, Hanna; Birkbak, Mie; Frølich, Simon; Kenesei, Peter; Almer, Jonathan D.; Stock, Stuart R.; Birkedal, Henrik

    2014-09-01

    Biological materials are complex and their investigation demands advanced characterization tools capable of elucidating their structure in three dimensions without the need for complicated sample preparation. Herein, we discuss our implementation of diffraction/scattering computed tomography (DSCT). DSCT is based on the use of diffraction information for tomographic reconstructions rather than linear attenuation as in regular μ-CT. This provides much additional information on the material under investigation. We illustrate the use of DSCT by discussion of data on a biomineralized attachment organ from a marine mussel. DSCT allowed mapping the spatial distribution of calcium carbonate polymorphs aragonite and calcite even though they were indistinguishable in absorption tomography. Detailed analysis of reconstructed diffraction patterns may provide additional insights as exemplified in the present case by mapping of the degree of chemical substitution in calcite.

  9. ENHANCEMENTS TO NATURAL ATTENUATION: SELECTED CASE STUDIES

    SciTech Connect

    Vangelas, K; W. H. Albright, W; E. S. Becvar, E; C. H. Benson, C; T. O. Early, T; E. Hood, E; P. M. Jardine, P; M. Lorah, M; E. Majche, E; D. Major, D; W. J. Waugh, W; G. Wein, G; O. R. West, O

    2007-05-15

    In 2003 the US Department of Energy (DOE) embarked on a project to explore an innovative approach to remediation of subsurface contaminant plumes that focused on introducing mechanisms for augmenting natural attenuation to achieve site closure. Termed enhanced attenuation (EA), this approach has drawn its inspiration from the concept of monitored natural attenuation (MNA).

  10. Attenuated Shigella as a DNA Delivery Vehicle for DNA-Mediated Immunization

    NASA Astrophysics Data System (ADS)

    Sizemore, Donata R.; Branstrom, Arthur A.; Sadoff, Jerald C.

    1995-10-01

    Direct inoculation of DNA, in the form of purified bacterial plasmids that are unable to replicate in mammalian cells but are able to direct cell synthesis of foreign proteins, is being explored as an approach to vaccine development. Here, a highly attenuated Shigella vector invaded mammalian cells and delivered such plasmids into the cytoplasm of cells, and subsequent production of functional foreign protein was measured. Because this Shigella vector was designed to deliver DNA to colonic mucosa, the method is a potential basis for oral and other mucosal DNA immunization and gene therapy strategies.

  11. SEISMIC ATTENUATION FOR RESERVOIR CHARACTERIZATION

    SciTech Connect

    Joel Walls; M.T. Taner; Gary Mavko; Jack Dvorkin

    2002-01-01

    In Section 1 of this first report we will describe the work we are doing to collect and analyze rock physics data for the purpose of modeling seismic attenuation from other measurable quantities such as porosity, water saturation, clay content and net stress. This work and other empirical methods to be presented later, will form the basis for ''Q pseudo-well modeling'' that is a key part of this project. In Section 2 of this report, we will show the fundamentals of a new method to extract Q, dispersion, and attenuation from field seismic data. The method is called Gabor-Morlet time-frequency decomposition. This technique has a number of advantages including greater stability and better time resolution than spectral ratio methods.

  12. Chlorine signal attenuation in concrete.

    PubMed

    Naqvi, A A; Maslehuddin, M; ur-Rehman, Khateeb; Al-Amoudi, O S B

    2015-11-01

    The intensity of prompt gamma-ray was measured at various depths from chlorine-contaminated silica fume (SF) concrete slab concrete specimens using portable neutron generator-based prompt gamma-ray setup. The intensity of 6.11MeV chloride gamma-rays was measured from the chloride contaminated slab at distance of 15.25, 20.25, 25.25, 30.25 and 35.25cm from neutron target in a SF cement concrete slab specimens. Due to attenuation of thermal neutron flux and emitted gamma-ray intensity in SF cement concrete at various depths, the measured intensity of chlorine gamma-rays decreases non-linearly with increasing depth in concrete. A good agreement was noted between the experimental results and the results of Monte Carlo simulation. This study has provided useful experimental data for evaluating the chloride contamination in the SF concrete utilizing gamma-ray attenuation method.

  13. Development of Streptococcus pneumoniae Vaccines Using Live Vectors

    PubMed Central

    Wang, Shifeng; Curtiss, Roy

    2014-01-01

    Streptococcus pneumoniae still causes severe morbidity and mortality worldwide, especially in young children and the elderly. Much effort has been dedicated to developing protein-based universal vaccines to conquer the current shortcomings of capsular vaccines and capsular conjugate vaccines, such as serotype replacement, limited coverage and high costs. A recombinant live vector vaccine delivering protective antigens is a promising way to achieve this goal. In this review, we discuss the researches using live recombinant vaccines, mainly live attenuated Salmonella and lactic acid bacteria, to deliver pneumococcal antigens. We also discuss both the limitations and the future of these vaccines. PMID:25309747

  14. SOLVING THE INTERIOR PROBLEM OF COMPUTED TOMOGRAPHY USING A PRIORI KNOWLEDGE

    PubMed Central

    Courdurier, M.; Noo, F.; Defrise, M.; Kudo, H.

    2008-01-01

    The case of incomplete tomographic data for a compactly supported attenuation function is studied. When the attenuation function is a priori known in a subregion, we show that a reduced set of measurements is enough to uniquely determine the attenuation function over all the space. Furthermore, we found stability estimates showing that reconstruction can be stable near the region where the attenuation is known. These estimates also suggest that reconstruction stability collapses quickly when approaching the set of points that are viewed under less than 180 degrees. This paper may be seen as a continuation of the work “Truncated Hilbert transform and Image reconstruction from limited tomographic data” that was published in Inverse Problems in 2006. This continuation tackles new cases of incomplete data that could be of interest in applications of computed tomography. PMID:20613970

  15. Evaluation of whole blood coagulation process by optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Xu, Xiangqun; Lin, Jia

    2010-11-01

    This study was to investigate the feasibility of using optical coherence tomography (OCT) to evaluate whole blood coagulation process. Attenuation coefficients and 1/e light penetration depth (D1/e) against time of human whole blood during in vitro clot formation under static were measured from the OCT profiles of reflectance vs depth. The results obtained clearly showed that the optical parameters are able to identify three stages during the in vitro blood clotting process. It is concluded that D1/e measured by OCT is a potential parameter to quantify and follow the liquid-gel transition of blood during clotting.

  16. Reduction of phase artifacts in differential phase contrast computed tomography.

    PubMed

    Jerjen, Iwan; Revol, Vincent; Schuetz, Philipp; Kottler, Christian; Kaufmann, Rolf; Luethi, Thomas; Jefimovs, Konstantins; Urban, Claus; Sennhauser, Urs

    2011-07-01

    X-ray differential phase contrast computed tomography (DPC CT) with a Talbot-Lau interferometer setup allows visualizing the three-dimensional distribution of the refractive index by measuring the shifts of an interference pattern due to phase variations of the X-ray beam. Unfortunately, severe reconstruction artifacts appear in the presence of differential phase wrapping and clipping. In this paper, we propose to use the attenuation contrast, which is obtained from the same measurement, for correcting the DPC signal. Using the example of a DPC CT measurement with pronounced phase artifacts, we will discuss the efficiency of our phase artifact correction method. PMID:21747516

  17. GPU Accelerated Vector Median Filter

    NASA Technical Reports Server (NTRS)

    Aras, Rifat; Shen, Yuzhong

    2011-01-01

    Noise reduction is an important step for most image processing tasks. For three channel color images, a widely used technique is vector median filter in which color values of pixels are treated as 3-component vectors. Vector median filters are computationally expensive; for a window size of n x n, each of the n(sup 2) vectors has to be compared with other n(sup 2) - 1 vectors in distances. General purpose computation on graphics processing units (GPUs) is the paradigm of utilizing high-performance many-core GPU architectures for computation tasks that are normally handled by CPUs. In this work. NVIDIA's Compute Unified Device Architecture (CUDA) paradigm is used to accelerate vector median filtering. which has to the best of our knowledge never been done before. The performance of GPU accelerated vector median filter is compared to that of the CPU and MPI-based versions for different image and window sizes, Initial findings of the study showed 100x improvement of performance of vector median filter implementation on GPUs over CPU implementations and further speed-up is expected after more extensive optimizations of the GPU algorithm .

  18. Bubble vector in automatic merging

    NASA Technical Reports Server (NTRS)

    Pamidi, P. R.; Butler, T. G.

    1987-01-01

    It is shown that it is within the capability of the DMAP language to build a set of vectors that can grow incrementally to be applied automatically and economically within a DMAP loop that serves to append sub-matrices that are generated within a loop to a core matrix. The method of constructing such vectors is explained.

  19. Vectors on the Basketball Court

    ERIC Educational Resources Information Center

    Bergman, Daniel

    2010-01-01

    An Idea Bank published in the April/May 2009 issue of "The Science Teacher" describes an experiential physics lesson on vectors and vector addition (Brown 2009). Like its football predecessor, the basketball-based investigation presented in this Idea Bank addresses National Science Education Standards Content B, Physical Science, 9-12 (NRC 1996)…

  20. Measuring the optical characteristics of medulloblastoma with optical coherence tomography

    PubMed Central

    Vuong, Barry; Skowron, Patryk; Kiehl, Tim-Rasmus; Kyan, Matthew; Garzia, Livia; Sun, Cuiru; Taylor, Michael D.; Yang, Victor X.D.

    2015-01-01

    Medulloblastoma is the most common malignant pediatric brain tumor. Standard treatment consists of surgical resection, followed by radiation and high-dose chemotherapy. Despite these efforts, recurrence is common, leading to reduced patient survival. Even with successful treatment, there are often severe long-term neurologic impacts on the developing nervous system. We present two quantitative techniques that use a high-resolution optical imaging modality: optical coherence tomography (OCT) to measure refractive index, and the optical attenuation coefficient. To the best of our knowledge, this study is the first to demonstrate OCT analysis of medulloblastoma. Refractive index and optical attenuation coefficient were able to differentiate between normal brain tissue and medulloblastoma in mouse models. More specifically, optical attenuation coefficient imaging of normal cerebellum displayed layers of grey matter and white matter, which were indistinguishable in the structural OCT image. The morphology of the tumor was distinct in the optical attenuation coefficient imaging. These inherent properties may be useful during neurosurgical intervention to better delineate tumor boundaries and minimize resection of normal tissue. PMID:25909030

  1. Physics-based modeling of computed tomography systems

    NASA Astrophysics Data System (ADS)

    Youn, Hanbean; Kim, Ho Kyung; Kam, Soohwa; Kim, Seung Ho; Park, Ji Woong; Jeon, Hosang

    2015-03-01

    We present a theoretical framework describing projections obtained from computed tomography systems considering physics of each component consisting of the systems. The projection model mainly consists of the attenuation of x-ray photons through objects including x-ray scatter and the detection of attenuated/scattered x-ray photons at pixel detector arrays. X-ray photons are attenuated by the Beers-Lambert law and scattered by using the Klein-Nishina formula. The cascaded signal-transfer model for the detector includes x-ray photon detection and light photon conversion/spreading in scintillators, light photon detection in photodiodes, and the addition of electronic noise quanta. On the other hand, image noise is considered by re-distributing the pixel signals in pixel-by-pixel ways at each image formation stage using the proper distribution functions. Instead of iterating the ray tracing over each energy bin in the x-ray spectrum, we first perform the ray tracing for an object only considering the thickness of each component. Then, we assign energy-dependent linear attenuation coefficients to each component in the projected images. This approach reduces the computation time by a factor of the number of energy bins in the x-ray spectrum divided by the number of components in the object compared with the conventional ray-tracing method. All the methods developed in this study are validated in comparisons with the measurements or the Monte Carlo simulations.

  2. A neutron tomography facility at a low power research reactor

    NASA Astrophysics Data System (ADS)

    Koerner, S.; Schillinger, B.; Vontobel, P.; Rauch, H.

    2001-09-01

    Neutron radiography (NR) provides a very efficient tool in the field of non-destructive testing as well as for many applications in fundamental research. A neutron beam penetrating a specimen is attenuated by the sample material and detected by a two-dimensional (2D) imaging device. The image contains information about materials and structure inside the sample because neutrons are attenuated according to the basic law of radiation attenuation. Contrary to X-rays, neutrons can be attenuated by some light materials, as for example, hydrogen and boron, but penetrate many heavy materials. Therefore, NR can yield important information not obtainable by more traditional methods. Nevertheless, there are many aspects of structure, both quantitative and qualitative, that are not accessible from 2D transmission images. Hence, there is an interest in three-dimensional neutron imaging. At the 250 kW TRIGA Mark II reactor of the Atominstitut in Austria a neutron tomography facility has been installed. The neutron flux at this beam position is 1.3×10 5 neutrons/cm 2 s and the beam diameter is 8 cm. For a 3D tomographic reconstruction of the sample interior, transmission images of the object taken from different view angles are required. Therefore, a rotary table driven by a step motor connected to a computerized motion control system has been installed at the sample position. In parallel a suitable electronic imaging device based on a neutron sensitive scintillator screen and a CCD-camera has been designed. It can be controlled by a computer in order to synchronize the software of the detector and of the rotary table with the aim of an automation of measurements. Reasonable exposure times can get as low as 20 s per image. This means that a complete tomography of a sample can be performed within one working day. Calculation of the 3D voxel array is made by using the filtered backprojection algorithm.

  3. Rice Reoviruses in Insect Vectors.

    PubMed

    Wei, Taiyun; Li, Yi

    2016-08-01

    Rice reoviruses, transmitted by leafhopper or planthopper vectors in a persistent propagative manner, seriously threaten the stability of rice production in Asia. Understanding the mechanisms that enable viral transmission by insect vectors is a key to controlling these viral diseases. This review describes current understanding of replication cycles of rice reoviruses in vector cell lines, transmission barriers, and molecular determinants of vector competence and persistent infection. Despite recent breakthroughs, such as the discoveries of actin-based tubule motility exploited by viruses to overcome transmission barriers and mutually beneficial relationships between viruses and bacterial symbionts, there are still many gaps in our knowledge of transmission mechanisms. Advances in genome sequencing, reverse genetics systems, and molecular technologies will help to address these problems. Investigating the multiple interaction systems among the virus, insect vector, insect symbiont, and plant during natural infection in the field is a central topic for future research on rice reoviruses. PMID:27296147

  4. A neural support vector machine.

    PubMed

    Jändel, Magnus

    2010-06-01

    Support vector machines are state-of-the-art pattern recognition algorithms that are well founded in optimization and generalization theory but not obviously applicable to the brain. This paper presents Bio-SVM, a biologically feasible support vector machine. An unstable associative memory oscillates between support vectors and interacts with a feed-forward classification pathway. Kernel neurons blend support vectors and sensory input. Downstream temporal integration generates the classification. Instant learning of surprising events and off-line tuning of support vector weights trains the system. Emotion-based learning, forgetting trivia, sleep and brain oscillations are phenomena that agree with the Bio-SVM model. A mapping to the olfactory system is suggested.

  5. Progress on adenovirus-vectored universal influenza vaccines

    PubMed Central

    Xiang, Kui; Ying, Guan; Yan, Zhou; Shanshan, Yan; Lei, Zhang; Hongjun, Li; Maosheng, Sun

    2015-01-01

    Influenza virus (IFV) infection causes serious health problems and heavy financial burdens each year worldwide. The classical inactivated influenza virus vaccine (IIVV) and live attenuated influenza vaccine (LAIV) must be updated regularly to match the new strains that evolve due to antigenic drift and antigenic shift. However, with the discovery of broadly neutralizing antibodies that recognize conserved antigens, and the CD8+ T cell responses targeting viral internal proteins nucleoprotein (NP), matrix protein 1 (M1) and polymerase basic 1 (PB1), it is possible to develop a universal influenza vaccine based on the conserved hemagglutinin (HA) stem, NP, and matrix proteins. Recombinant adenovirus (rAd) is an ideal influenza vaccine vector because it has an ideal stability and safety profile, induces balanced humoral and cell-mediated immune responses due to activation of innate immunity, provides ‘self-adjuvanting’ activity, can mimic natural IFV infection, and confers seamless protection against mucosal pathogens. Moreover, this vector can be developed as a low-cost, rapid-response vaccine that can be quickly manufactured. Therefore, an adenovirus vector encoding conserved influenza antigens holds promise in the development of a universal influenza vaccine. This review will summarize the progress in adenovirus-vectored universal flu vaccines and discuss future novel approaches. PMID:25876176

  6. Progress on adenovirus-vectored universal influenza vaccines.

    PubMed

    Xiang, Kui; Ying, Guan; Yan, Zhou; Shanshan, Yan; Lei, Zhang; Hongjun, Li; Maosheng, Sun

    2015-01-01

    Influenza virus (IFV) infection causes serious health problems and heavy financial burdens each year worldwide. The classical inactivated influenza virus vaccine (IIVV) and live attenuated influenza vaccine (LAIV) must be updated regularly to match the new strains that evolve due to antigenic drift and antigenic shift. However, with the discovery of broadly neutralizing antibodies that recognize conserved antigens, and the CD8(+) T cell responses targeting viral internal proteins nucleoprotein (NP), matrix protein 1 (M1) and polymerase basic 1 (PB1), it is possible to develop a universal influenza vaccine based on the conserved hemagglutinin (HA) stem, NP, and matrix proteins. Recombinant adenovirus (rAd) is an ideal influenza vaccine vector because it has an ideal stability and safety profile, induces balanced humoral and cell-mediated immune responses due to activation of innate immunity, provides 'self-adjuvanting' activity, can mimic natural IFV infection, and confers seamless protection against mucosal pathogens. Moreover, this vector can be developed as a low-cost, rapid-response vaccine that can be quickly manufactured. Therefore, an adenovirus vector encoding conserved influenza antigens holds promise in the development of a universal influenza vaccine. This review will summarize the progress in adenovirus-vectored universal flu vaccines and discuss future novel approaches.

  7. Natural and enhanced attenuation of metals

    SciTech Connect

    Rouse, J.V.; Pyrih, R.Z.

    1996-12-31

    The ability of natural earthen materials to attenuate the movement of contamination can be quantified in relatively simple geochemical experiments. In addition, the ability of subsurface material to attenuate potential contaminants can be enhanced through modifications to geochemical parameters such as pH or redox conditions. Such enhanced geochemical attenuation has been demonstrated at a number of sites to be a cost-effective alternative to conventional pump and treat operations. This paper describes the natural attenuation reactions which occur in the subsurface, and the way to quantify such attenuation. It also introduces the concept of enhanced geochemical attenuation, wherein naturally-occurring geochemical reactions can be used to achieve in situ fixation. The paper presents examples where such natural and enhanced attenuation have been implemented as a part of an overall remedy.

  8. Vector Network Analysis

    1997-10-20

    Vector network analyzers are a convenient way to measure scattering parameters of a variety of microwave devices. However, these instruments, unlike oscilloscopes for example, require a relatively high degree of user knowledge and expertise. Due to the complexity of the instrument and of the calibration process, there are many ways in which an incorrect measurement may be produced. The Microwave Project, which is part of Sandia National Laboratories Primary Standards Laboratory, routinely uses check standardsmore » to verify that the network analyzer is operating properly. In the past, these measurements were recorded manually and, sometimes, interpretation of the results was problematic. To aid our measurement assurance process, a software program was developed to automatically measure a check standard and compare the new measurements with an historical database of measurements of the same device. The program acquires new measurement data from selected check standards, plots the new data against the mean and standard deviation of prior data for the same check standard, and updates the database files for the check standard. The program is entirely menu-driven requiring little additional work by the user.« less

  9. Compressive Phase Contrast Tomography

    SciTech Connect

    Maia, Filipe; MacDowell, Alastair; Marchesini, Stefano; Padmore, Howard A.; Parkinson, Dula Y.; Pien, Jack; Schirotzek, Andre; Yang, Chao

    2010-09-01

    When x-rays penetrate soft matter, their phase changes more rapidly than their amplitude. Interference effects visible with high brightness sources creates higher contrast, edge enhanced images. When the object is piecewise smooth (made of big blocks of a few components), such higher contrast datasets have a sparse solution. We apply basis pursuit solvers to improve SNR, remove ring artifacts, reduce the number of views and radiation dose from phase contrast datasets collected at the Hard X-Ray Micro Tomography Beamline at the Advanced Light Source. We report a GPU code for the most computationally intensive task, the gridding and inverse gridding algorithm (non uniform sampled Fourier transform).

  10. Positron Emission Tomography (PET)

    SciTech Connect

    Welch, M.J.

    1990-01-01

    Positron emission tomography (PET) assesses biochemical processes in the living subject, producing images of function rather than form. Using PET, physicians are able to obtain not the anatomical information provided by other medical imaging techniques, but pictures of physiological activity. In metaphoric terms, traditional imaging methods supply a map of the body's roadways, its, anatomy; PET shows the traffic along those paths, its biochemistry. This document discusses the principles of PET, the radiopharmaceuticals in PET, PET research, clinical applications of PET, the cost of PET, training of individuals for PET, the role of the United States Department of Energy in PET, and the futures of PET. 22 figs.

  11. Atom probe tomography

    SciTech Connect

    Miller, M.K.; Forbes, R.G.

    2009-06-15

    This introductory tutorial describes the technique of atom probe tomography for materials characterization at the atomic level. The evolution of the technique from the initial atom probe field ion microscope to today's state-of-the-art three dimensional atom probe is outlined. An introduction is presented on the basic physics behind the technique, the operation of the instrument, and the reconstruction of the three-dimensional data. The common methods for analyzing the three-dimensional atom probe data, including atom maps, isoconcentration surfaces, proximity histograms, maximum separation methods, and concentration frequency distributions, are described.

  12. Tomography finds waste sites

    NASA Astrophysics Data System (ADS)

    Bush, Susan M.

    Geophysical diffraction tomography (GDT), a remote sensing method, is being developed for hazardous waste site characterization by researchers at Oak Ridge National Laboratory, Tenn., with the support of the U.S. Army Toxic and Hazardous Materials Agency, Aberdeen Proving Ground, Md.More accurate assessment of hazardous sites translates into more efficient and less costly cleanup efforts by defining parameters such as waste site boundaries, geophysical site characteristics, buried container leakage, and hazardous material migration. Remote sensing devices eliminate the potential for environmental damage, safety hazards, or high costs associated with intrusive site characterization techniques.

  13. Laser Doppler projection tomography.

    PubMed

    Zeng, Yaguang; Xiong, Ke; Lu, Xuanlong; Feng, Guanping; Han, Dingan; Wu, Jing

    2014-02-15

    We propose a laser Doppler projection tomography (LDPT) method to obtain visualization of three-dimensional (3D) flowing structures. With LDPT, the flowing signal is extracted by a modified laser Doppler method, and the 3D flowing image is reconstructed by the filtered backprojection algorithm. Phantom experiments are performed to demonstrate that LDPT is able to obtain 3D flowing structure with higher signal-to-noise ratio and spatial resolution. Our experiment results display its potentially useful application to develop 3D label-free optical angiography for the circulation system of live small animal models or microfluidic experiments.

  14. Radial reflection diffraction tomography

    DOEpatents

    Lehman, Sean K.

    2012-12-18

    A wave-based tomographic imaging method and apparatus based upon one or more rotating radially outward oriented transmitting and receiving elements have been developed for non-destructive evaluation. At successive angular locations at a fixed radius, a predetermined transmitting element can launch a primary field and one or more predetermined receiving elements can collect the backscattered field in a "pitch/catch" operation. A Hilbert space inverse wave (HSIW) algorithm can construct images of the received scattered energy waves using operating modes chosen for a particular application. Applications include, improved intravascular imaging, bore hole tomography, and non-destructive evaluation (NDE) of parts having existing access holes.

  15. Towards Global Adjoint Tomography

    NASA Astrophysics Data System (ADS)

    Bozdag, E.; Zhu, H.; Peter, D. B.; Tromp, J.

    2012-12-01

    Seismic tomography is at a stage where we can harness entire seismograms using the opportunities offered by advances in numerical wave propagation solvers and high-performance computing. Adjoint methods provide an efficient way for incorporating full nonlinearity of wave propagation and 3D Fréchet kernels in iterative seismic inversions which have so far given promising results at continental and regional scales. Our goal is to take adjoint tomography forward to image the entire planet. Using an iterative conjugate gradient scheme, we initially set the aim to obtain a global crustal and mantle model with confined transverse isotropy in the upper mantle. We have started with around 255 global CMT events having moment magnitudes between 5.8 and 7, and used GSN stations as well as some local networks such as USArray, European stations etc. Prior to the structure inversion, we reinvert global CMT solutions by computing Green functions in our 3D reference model to take into account effects of crustal variations on source parameters. Using the advantages of numerical simulations, our strategy is to invert crustal and mantle structure together to avoid any bias introduced into upper-mantle images due to "crustal corrections", which are commonly used in classical tomography. 3D simulations dramatically increase the usable amount of data so that, with the current earthquake-station setup, we perform each iteration with more than two million measurements. Multi-resolution smoothing based on ray density is applied to the gradient to better deal with the imperfect source-station distribution on the globe and extract more information underneath regions with dense ray coverage and vice versa. Similar to frequency domain approach, we reduce nonlinearities by starting from long periods and gradually increase the frequency content of data after successive model updates. To simplify the problem, we primarily focus on the elastic structure and therefore our measurements are based on

  16. Positron Emission Tomography (PET)

    DOE R&D Accomplishments Database

    Welch, M. J.

    1990-01-01

    Positron emission tomography (PET) assesses biochemical processes in the living subject, producing images of function rather than form. Using PET, physicians are able to obtain not the anatomical information provided by other medical imaging techniques, but pictures of physiological activity. In metaphoric terms, traditional imaging methods supply a map of the body's roadways, its, anatomy; PET shows the traffic along those paths, its biochemistry. This document discusses the principles of PET, the radiopharmaceuticals in PET, PET research, clinical applications of PET, the cost of PET, training of individuals for PET, the role of the United States Department of Energy in PET, and the futures of PET.

  17. Chikungunya Virus–Vector Interactions

    PubMed Central

    Coffey, Lark L.; Failloux, Anna-Bella; Weaver, Scott C.

    2014-01-01

    Chikungunya virus (CHIKV) is a mosquito-borne alphavirus that causes chikungunya fever, a severe, debilitating disease that often produces chronic arthralgia. Since 2004, CHIKV has emerged in Africa, Indian Ocean islands, Asia, Europe, and the Americas, causing millions of human infections. Central to understanding CHIKV emergence is knowledge of the natural ecology of transmission and vector infection dynamics. This review presents current understanding of CHIKV infection dynamics in mosquito vectors and its relationship to human disease emergence. The following topics are reviewed: CHIKV infection and vector life history traits including transmission cycles, genetic origins, distribution, emergence and spread, dispersal, vector competence, vector immunity and microbial interactions, and co-infection by CHIKV and other arboviruses. The genetics of vector susceptibility and host range changes, population heterogeneity and selection for the fittest viral genomes, dual host cycling and its impact on CHIKV adaptation, viral bottlenecks and intrahost diversity, and adaptive constraints on CHIKV evolution are also discussed. The potential for CHIKV re-emergence and expansion into new areas and prospects for prevention via vector control are also briefly reviewed. PMID:25421891

  18. Representative Elementary Length to Measure Soil Mass Attenuation Coefficient

    PubMed Central

    Borges, J. A. R.; Pires, L. F.; Costa, J. C.

    2014-01-01

    With increasing demand for better yield in agricultural areas, soil physical property representative measurements are more and more essential. Nuclear techniques such as computerized tomography (CT) and gamma-ray attenuation (GAT) have been widely employed with this purpose. The soil mass attenuation coefficient (μs) is an important parameter for CT and GAT analysis. When experimentally determined (μes), the use of suitable sized samples enable to evaluate it precisely, as well as to reduce measurement time and costs. This study investigated the representative elementary length (REL) of sandy and clayey soils for μes measurements. Two radioactive sources were employed (241Am and 137Cs), three collimators (2–4 mm diameters), and 14 thickness (x) samples (2–15 cm). Results indicated ideal thickness intervals of 12–15 and 2–4 cm for the sources 137Cs and 241Am, respectively. The application of such results in representative elementary area (REA) evaluations in clayey soil clods via CT indicated that μes average values obtained for x > 4 cm and source 241Am might induce to the use of samples which are not large enough for soil bulk density evaluations (ρs). As a consequence, ρs might be under- or overestimated, generating inaccurate conclusions about the physical quality of the soil under study. PMID:24672338

  19. Stripe sensor tomography.

    PubMed

    Barbic, Mladen; Vltava, Lvcian; Barrett, Christopher P; Emery, Teresa H; Scherer, Axel

    2008-03-01

    We introduce a general concept of tomographic imaging for the case of an imaging sensor that has a stripelike shape. We first show that there is no difference, in principle, between two-dimensional tomography using conventional electromagnetic or particle radiation and tomography where a stripe sensor is mechanically scanned over a sample at a sequence of different angles. For a single stripe detector imaging, linear motion and angular rotation are required. We experimentally demonstrate single stripe sensor imaging principle using an elongated inductive coil detector. By utilizing an array of parallel stripe sensors that can be individually addressed, two-dimensional imaging can be performed with rotation only, eliminating the requirement for linear motion, as we also experimentally demonstrate with parallel coil array. We conclude that imaging with a stripe-type sensor of particular width and thickness (where the width is much larger than the thickness) is resolution limited only by the thickness (smaller parameter) of the sensor. We give examples of multiple sensor families where this imaging technique may be beneficial such as magnetoresistive, inductive, superconducting quantum interference device, and Hall effect sensors, and, in particular, discuss the possibilities of the technique in the field of magnetic resonance imaging.

  20. Positron Emission Tomography.

    PubMed

    Lameka, Katherine; Farwell, Michael D; Ichise, Masanori

    2016-01-01

    Positron emission tomography (PET) is a minimally invasive imaging procedure with a wide range of clinical and research applications. PET allows for the three-dimensional mapping of administered positron-emitting radiopharmaceuticals such as (18)F-fluorodeoxyglucose (for imaging glucose metabolism). PET enables the study of biologic function in both health and disease, in contrast to magnetic resonance imaging (MRI) and computed tomography (CT), that are more suited to study a body's morphologic changes, although functional MRI can also be used to study certain brain functions by measuring blood flow changes during task performance. This chapter first provides an overview of the basic physics principles and instrumentation behind PET methodology, with an introduction to the merits of merging functional PET imaging with anatomic CT or MRI imaging. We then focus on clinical neurologic disorders, and reference research on relevant PET radiopharmaceuticals when applicable. We then provide an overview of PET scan interpretation and findings in several specific neurologic disorders such as dementias, epilepsy, movement disorders, infection, cerebrovascular disorders, and brain tumors. PMID:27432667

  1. Internal tide oceanic tomography

    NASA Astrophysics Data System (ADS)

    Zhao, Zhongxiang

    2016-09-01

    A concept of internal tide oceanic tomography (ITOT) is proposed to monitor ocean warming on a global scale. ITOT is similar to acoustic tomography, but that work waves are internal tides. ITOT detects ocean temperature changes by precisely measuring travel time changes of long-range propagating internal tides. The underlying principle is that upper ocean warming strengthens ocean stratification and thus increases the propagation speed of internal tides. This concept is inspired by recent advances in observing internal tides by satellite altimetry. In particular, a plane wave fit method can separately resolve multiple internal tidal waves and thus accurately determines the phase of each wave. Two examples are presented to demonstrate the feasibility and usefulness of ITOT. In the eastern tropical Pacific, the yearly time series of travel time changes of the M2 internal tide is closely correlated with the El Niño-Southern Oscillation index. In the North Atlantic, significant interannual variations and bidecadal trends are observed and consistent with the changes in ocean heat content measured by Argo floats. ITOT offers a long-term, cost-effective, environmentally friendly technique for monitoring global ocean warming. Future work is needed to quantify the accuracy of this technique.

  2. Successive refinement lattice vector quantization.

    PubMed

    Mukherjee, Debargha; Mitra, Sanjit K

    2002-01-01

    Lattice Vector quantization (LVQ) solves the complexity problem of LBG based vector quantizers, yielding very general codebooks. However, a single stage LVQ, when applied to high resolution quantization of a vector, may result in very large and unwieldy indices, making it unsuitable for applications requiring successive refinement. The goal of this work is to develop a unified framework for progressive uniform quantization of vectors without having to sacrifice the mean- squared-error advantage of lattice quantization. A successive refinement uniform vector quantization methodology is developed, where the codebooks in successive stages are all lattice codebooks, each in the shape of the Voronoi regions of the lattice at the previous stage. Such Voronoi shaped geometric lattice codebooks are named Voronoi lattice VQs (VLVQ). Measures of efficiency of successive refinement are developed based on the entropy of the indices transmitted by the VLVQs. Additionally, a constructive method for asymptotically optimal uniform quantization is developed using tree-structured subset VLVQs in conjunction with entropy coding. The methodology developed here essentially yields the optimal vector counterpart of scalar "bitplane-wise" refinement. Unfortunately it is not as trivial to implement as in the scalar case. Furthermore, the benefits of asymptotic optimality in tree-structured subset VLVQs remain elusive in practical nonasymptotic situations. Nevertheless, because scalar bitplane- wise refinement is extensively used in modern wavelet image coders, we have applied the VLVQ techniques to successively refine vectors of wavelet coefficients in the vector set-partitioning (VSPIHT) framework. The results are compared against SPIHT and the previous successive approximation wavelet vector quantization (SA-W-VQ) results of Sampson, da Silva and Ghanbari.

  3. Vector and Axial-Vector Structures of the Θ+

    NASA Astrophysics Data System (ADS)

    Kim, Hyun-Chul; Ledwig, Tim; Goeke, Klaus

    We present in this talk recent results of the vector and axial-vector transitions of the nucleon to the pentaquark baryon Θ+, based on the SU(3) chiral quark-soliton model. The results are summarized as follows: K*NΘ vector and tensor coupling constants turn out to be gK*NΘ ≃ 0.81 and fK*NΘ ≃ 0.84, respectively, and the KNΘ axial-vector coupling constant to be g*A ˜= 0.05. As a result, the total decay width for Θ+ → NK becomes very small: ΓΘ→NK ≃ 0.71 MeV, which is consistent with the DIANA result ΓΘ→NK = 0.36 ± 0.11 MeV.

  4. Influence of dental resin material composition on cross-polarization-optical coherence tomography imaging

    PubMed Central

    Lammeier, Carmen; Li, YuPing; Lunos, Scott; Fok, Alex; Rudney, Joel

    2012-01-01

    Abstract. The purpose of this study was to investigate cross-polarization-optical coherence tomography (CP-OCT) signal attenuation through different resin material compositions. Four distinct composite systems were used: Filtek supreme ultra (FSU) (3M ESPE), IPS empress direct (EMD) (Ivoclar Vivadent), estelite sigma quick (SQK) (Tokuyama Dental), and Z100 (3M ESPE). Cross-sectional images of different composite-demineralized phantoms (n=108) were collected using a 1310-nm intraoral cross-polarization swept source OCT (CP-OCT) imaging system. %T quantified the CP-OCT signal attenuation. Scanning electron microscopy, transmission electron microscopy, and energy-dispersive x-ray spectrometer chemical analysis was utilized to determine how different matrix/filler compositions affected attenuation of the near infrared (NIR) signal. CP-OCT imaging of dental resin composites showed enormous variation in signal attenuation. For each of our composite systems, there was not a consistent attenuation difference in the NIR signal for A to D shades. The four composites had similar measured backscattering values but attenuated the overall signal to different degrees. When comparing the A2 shades between the four different composite systems, the order of highest to lowest of %T was EMD>Z100, FSU>SQK (ANOVA, Tukey, p<0.0001). As a result, we demonstrate the importance of understanding how the constituents of composite materials affect CP-OCT signal attenuation. PMID:23224001

  5. Influence of dental resin material composition on cross-polarization-optical coherence tomography imaging.

    PubMed

    Lammeier, Carmen; Li, YuPing; Lunos, Scott; Fok, Alex; Rudney, Joel; Jones, Robert S

    2012-10-01

    The purpose of this study was to investigate cross-polarization-optical coherence tomography (CP-OCT) signal attenuation through different resin material compositions. Four distinct composite systems were used: Filtek supreme ultra (FSU) (3M ESPE), IPS empress direct (EMD) (Ivoclar Vivadent), estelite sigma quick (SQK) (Tokuyama Dental), and Z100 (3M ESPE). Cross-sectional images of different composite-demineralized phantoms (n=108) were collected using a 1310-nm intraoral cross-polarization swept source OCT (CP-OCT) imaging system. %T quantified the CP-OCT signal attenuation. Scanning electron microscopy, transmission electron microscopy, and energy-dispersive x-ray spectrometer chemical analysis was utilized to determine how different matrix/filler compositions affected attenuation of the near infrared (NIR) signal. CP-OCT imaging of dental resin composites showed enormous variation in signal attenuation. For each of our composite systems, there was not a consistent attenuation difference in the NIR signal for A to D shades. The four composites had similar measured backscattering values but attenuated the overall signal to different degrees. When comparing the A2 shades between the four different composite systems, the order of highest to lowest of %T was EMD>Z100, FSU>SQK (ANOVA, Tukey, p<0.0001). As a result, we demonstrate the importance of understanding how the constituents of composite materials affect CP-OCT signal attenuation.

  6. Influence of dental resin material composition on cross-polarization-optical coherence tomography imaging

    NASA Astrophysics Data System (ADS)

    Lammeier, Carmen; Li, YuPing; Lunos, Scott; Fok, Alex; Rudney, Joel; Jones, Robert S.

    2012-10-01

    The purpose of this study was to investigate cross-polarization-optical coherence tomography (CP-OCT) signal attenuation through different resin material compositions. Four distinct composite systems were used: Filtek supreme ultra (FSU) (3M ESPE), IPS empress direct (EMD) (Ivoclar Vivadent), estelite sigma quick (SQK) (Tokuyama Dental), and Z100 (3M ESPE). Cross-sectional images of different composite-demineralized phantoms (n=108) were collected using a 1310-nm intraoral cross-polarization swept source OCT (CP-OCT) imaging system. %T quantified the CP-OCT signal attenuation. Scanning electron microscopy, transmission electron microscopy, and energy-dispersive x-ray spectrometer chemical analysis was utilized to determine how different matrix/filler compositions affected attenuation of the near infrared (NIR) signal. CP-OCT imaging of dental resin composites showed enormous variation in signal attenuation. For each of our composite systems, there was not a consistent attenuation difference in the NIR signal for A to D shades. The four composites had similar measured backscattering values but attenuated the overall signal to different degrees. When comparing the A2 shades between the four different composite systems, the order of highest to lowest of %T was EMD>Z100, FSU>SQK (ANOVA, Tukey, p<0.0001). As a result, we demonstrate the importance of understanding how the constituents of composite materials affect CP-OCT signal attenuation.

  7. Computed Tomography Measuring Inside Machines

    NASA Technical Reports Server (NTRS)

    Wozniak, James F.; Scudder, Henry J.; Anders, Jeffrey E.

    1995-01-01

    Computed tomography applied to obtain approximate measurements of radial distances from centerline of turbopump to leading edges of diffuser vanes in turbopump. Use of computed tomography has significance beyond turbopump application: example of general concept of measuring internal dimensions of assembly of parts without having to perform time-consuming task of taking assembly apart and measuring internal parts on coordinate-measuring machine.

  8. Novel Chikungunya Vaccine Candidate with an IRES-Based Attenuation and Host Range Alteration Mechanism

    PubMed Central

    Plante, Kenneth; Wang, Eryu; Partidos, Charalambos D.; Weger, James; Gorchakov, Rodion; Tsetsarkin, Konstantin; Borland, Erin M.; Powers, Ann M.; Seymour, Robert; Stinchcomb, Dan T.; Osorio, Jorge E.; Frolov, Ilya; Weaver, Scott C.

    2011-01-01

    Chikungunya virus (CHIKV) is a reemerging mosquito-borne pathogen that has recently caused devastating urban epidemics of severe and sometimes chronic arthralgia. As with most other mosquito-borne viral diseases, control relies on reducing mosquito populations and their contact with people, which has been ineffective in most locations. Therefore, vaccines remain the best strategy to prevent most vector-borne diseases. Ideally, vaccines for diseases of resource-limited countries should combine low cost and single dose efficacy, yet induce rapid and long-lived immunity with negligible risk of serious adverse reactions. To develop such a vaccine to protect against chikungunya fever, we employed a rational attenuation mechanism that also prevents the infection of mosquito vectors. The internal ribosome entry site (IRES) from encephalomyocarditis virus replaced the subgenomic promoter in a cDNA CHIKV clone, thus altering the levels and host-specific mechanism of structural protein gene expression. Testing in both normal outbred and interferon response-defective mice indicated that the new vaccine candidate is highly attenuated, immunogenic and efficacious after a single dose. Furthermore, it is incapable of replicating in mosquito cells or infecting mosquitoes in vivo. This IRES-based attenuation platform technology may be useful for the predictable attenuation of any alphavirus. PMID:21829348

  9. Colliders and brane vector phenomenology

    SciTech Connect

    Clark, T. E.; Love, S. T.; Xiong, C.; Nitta, Muneto; Veldhuis, T. ter

    2008-12-01

    Brane world oscillations manifest themselves as massive vector gauge fields. Their coupling to the standard model is deduced using the method of nonlinear realizations of the spontaneously broken higher dimensional space-time symmetries. Brane vectors are stable and weakly interacting and therefore escape particle detectors unnoticed. LEP and Tevatron data on the production of a single photon in conjunction with missing energy are used to delineate experimentally excluded regions of brane vector parameter space. The additional region of parameter space accessible to the LHC as well as a future lepton linear collider is also determined by means of this process.

  10. Initial conditions for vector inflation

    SciTech Connect

    Chiba, Takeshi

    2008-08-15

    Recently, a model of inflation using non-minimally coupled massive vector fields has been proposed. For a particular choice of non-minimal coupling parameter and for a flat Friedmann-Robertson-Walker model, the model is reduced to the model of chaotic inflation with massive scalar field. We study the effect of non-zero curvature of the universe on the onset of vector inflation. We find that in a curved universe the dynamics of vector inflation can be different from the dynamics of chaotic inflation, and the fraction of the initial conditions leading to inflationary solutions is reduced as compared with the chaotic inflation case.

  11. Computed tomography of the liver and kidneys in glycogen storage disease.

    PubMed

    Doppman, J L; Cornblath, M; Dwyer, A J; Adams, A J; Girton, M E; Sidbury, J

    1982-02-01

    Glycogen, in concentrations encountered in von Gierke's disease, has computed tomography (CT) attenuation coefficients in the 50 to 70 Hounsfield unit (HU: 1,000 scale) range and accounts for the increased density of the liver. However, in eight patients with Type I glycogen storage disease, simultaneous hepatic infiltration with fat and glycogen led to a range of liver CT densities from 13 to 80 HU. Fatty infiltration may facilitate the demonstration of hepatic tumors in older patients with this disease. Half the patients showed increased attenuation coefficients of the renal cortex, indicating glycogen deposition in the kidneys. PMID:6950959

  12. Localization of cortical tissue optical changes during seizure activity in vivo with optical coherence tomography

    PubMed Central

    Eberle, Melissa M.; Hsu, Mike S.; Rodriguez, Carissa L.; Szu, Jenny I.; Oliveira, Michael C.; Binder, Devin K.; Park, B. Hyle

    2015-01-01

    Optical coherence tomography (OCT) is a high resolution, minimally invasive imaging technique, which can produce depth-resolved cross-sectional images. In this study, OCT was used to detect changes in the optical properties of cortical tissue in vivo in mice during the induction of global (pentylenetetrazol) and focal (4-aminopyridine) seizures. Through the use of a confidence interval statistical method on depth-resolved volumes of attenuation coefficient, we demonstrated localization of regions exhibiting both significant positive and negative changes in attenuation coefficient, as well as differentiating between global and focal seizure propagation. PMID:26137382

  13. SEISMIC ATTENUATION FOR RESERVOIR CHARACTERIZATION

    SciTech Connect

    Joel Walls; M.T. Taner; Naum Derzhi; Gary Mavko; Jack Dvorkin

    2003-04-01

    In this report we will show some new Q related seismic attributes on the Burlington-Seitel data set. One example will be called Energy Absorption Attribute (EAA) and is based on a spectral analysis. The EAA algorithm is designed to detect a sudden increase in the rate of exponential decay in the relatively higher frequency portion of the spectrum. In addition we will show results from a hybrid attribute that combines attenuation with relative acoustic impedance to give a better indication of commercial gas saturation.

  14. Filtered back-projection reconstruction for attenuation proton CT along most likely paths

    NASA Astrophysics Data System (ADS)

    Quiñones, C. T.; Létang, J. M.; Rit, S.

    2016-05-01

    This work investigates the attenuation of a proton beam to reconstruct the map of the linear attenuation coefficient of a material which is mainly caused by the inelastic interactions of protons with matter. Attenuation proton computed tomography (pCT) suffers from a poor spatial resolution due to multiple Coulomb scattering (MCS) of protons in matter, similarly to the conventional energy-loss pCT. We therefore adapted a recent filtered back-projection algorithm along the most likely path (MLP) of protons for energy-loss pCT (Rit et al 2013) to attenuation pCT assuming a pCT scanner that can track the position and the direction of protons before and after the scanned object. Monte Carlo simulations of pCT acquisitions of density and spatial resolution phantoms were performed to characterize the new algorithm using Geant4 (via Gate). Attenuation pCT assumes an energy-independent inelastic cross-section, and the impact of the energy dependence of the inelastic cross-section below 100 MeV showed a capping artifact when the residual energy was below 100 MeV behind the object. The statistical limitation has been determined analytically and it was found that the noise in attenuation pCT images is 411 times and 278 times higher than the noise in energy-loss pCT images for the same imaging dose at 200 MeV and 300 MeV, respectively. Comparison of the spatial resolution of attenuation pCT images with a conventional straight-line path binning showed that incorporating the MLP estimates during reconstruction improves the spatial resolution of attenuation pCT. Moreover, regardless of the significant noise in attenuation pCT images, the spatial resolution of attenuation pCT was better than that of conventional energy-loss pCT in some studied situations thanks to the interplay of MCS and attenuation known as the West-Sherwood effect.

  15. Ambient Noise Observables from USArray: Site Amplification, Scattering and Attenuation

    NASA Astrophysics Data System (ADS)

    Bowden, D. C.; Tsai, V. C.; Lin, F. C.

    2015-12-01

    Previous work has demonstrated the usefulness of tracking wavefronts from ambient noise cross correlations across small, dense arrays (e.g., the Long Beach array). We now apply a similar method to USArray data to explore the information available on a continental scale. The approach measures the travel times and amplitudes of a wave propagating across the array and through numerical computations of spatial gradients corrects for geometric spreading, focusing and defocusing; any remaining signal is attributed to local site amplification effects, intrinsic attenuation, or the presence of sources/scatterers within the array. Because the USArray was active in different regions at different times and therefore subject to a variable background noise field, we are careful to divide the US into smaller regions and ensure that noise correlation pairs can be stacked over an identical time period before measuring a given spatial gradient. USArray observations of distant earthquakes have been shown to recover site amplification terms and attenuation through helmholtz tomography, but the use of ambient noise allows for such measurements at shorter periods and with greater flexibility. Site amplification maps produced with ambient noise show promising variations correlated with local geology, tectonics and velocity models, for periods at least as low as 12 seconds. Additionally, source differences between the incoming and outgoing wavefronts of ambient noise (negative and positive lags) may provide the ability to image noise sources or local scatterers within the continental US. These types of observations, especially site amplification and attenuation, may be used to supplement or improve traditional velocity-based tomographic methods, as they provide different constraints on temperature and density. They may also be useful for seismic hazard studies as they provide direct observations of site effects independent of complex inversions and forward model simulations.

  16. Performance and Integrity Analysis of the Vector Tracking Architecture of GNSS Receivers

    NASA Astrophysics Data System (ADS)

    Bhattacharyya, Susmita

    Frequent loss or attenuation of signals in urban areas and integrity (or reliability of system performance) are two principal challenges facing the Global Navigation Satellite Systems or GNSS today. They are of critical importance especially to safety or liability-critical applications where system malfunction can cause safety problems or has legal/economic consequences. To deal with the problem of integrity, algorithms called integrity monitors have been developed and fielded. These monitors are designed to raise an alarm when situations resulting in misleading information are identified. However, they do not enhance the ability of a GNSS receiver to track weak signals. Among several approaches proposed to deal with the problem of frequent signal outage, an advanced GNSS receiver architecture called vector tracking loops has attracted much attention in recent years. While there is an extensive body of knowledge that documents vector tracking's superiority to deal with weak signals, prior work on vector loop integrity monitoring is scant. Systematic designs of a vector loop-integrity monitoring scheme can find use in above-mentioned applications that are inherently vulnerable to frequent signal loss or attenuation. Developing such a system, however, warrants a thorough understanding of the workings of the vector architecture as the open literature provides very few preliminary studies in this regard. To this end, the first aspect of this research thoroughly explains the internal operations of the vector architecture. It recasts the existing complex vector architecture equations into parametric models that are mathematically tractable. An in-depth theoretical analysis of these models reveals that inter-satellite aiding is the key to vector tracking's superiority. The second aspect of this research performs integrity studies of the vector loops. Simulation results from the previous analysis show that inter-satellite aiding allows easy propagation of errors (and

  17. Imaging Rayleigh wave attenuation with USArray

    NASA Astrophysics Data System (ADS)

    Bao, Xueyang; Dalton, Colleen A.; Jin, Ge; Gaherty, James B.; Shen, Yang

    2016-07-01

    The EarthScope USArray provides an opportunity to obtain detailed images of the continental upper mantle at an unprecedented scale. The majority of mantle models derived from USArray data to date contain spatial variations in seismic-wave speed; however, in many cases these data sets do not by themselves allow a non-unique interpretation. Joint interpretation of seismic attenuation and velocity models can improve upon the interpretations based only on velocity and provide important constraints on the temperature, composition, melt content, and volatile content of the mantle. The surface wave amplitudes that constrain upper-mantle attenuation are sensitive to factors in addition to attenuation, including the earthquake source excitation, focusing and defocusing by elastic structure, and local site amplification. Because of the difficulty of isolating attenuation from these other factors, little is known about the attenuation structure of the North American upper mantle. In this study, Rayleigh wave traveltime and amplitude in the period range 25-100 s are measured using an interstation cross-correlation technique, which takes advantage of waveform similarity at nearby stations. Several estimates of Rayleigh wave attenuation and site amplification are generated at each period, using different approaches to separate the effects of attenuation and local site amplification on amplitude. It is assumed that focusing and defocusing effects can be described by the Laplacian of the traveltime field. All approaches identify the same large-scale patterns in attenuation, including areas where the attenuation values are likely contaminated by unmodelled focusing and defocusing effects. Regionally averaged attenuation maps are constructed after removal of the contaminated attenuation values, and the variations in intrinsic shear attenuation that are suggested by these Rayleigh wave attenuation maps are explored.

  18. Breast tomography with synchrotron radiation: preliminary results

    NASA Astrophysics Data System (ADS)

    Pani, Silvia; Longo, Renata; Dreossi, Diego; Montanari, Francesco; Olivo, Alessandro; Arfelli, Fulvia; Bergamaschi, Anna; Poropat, Paolo; Rigon, Luigi; Zanconati, Fabrizio; Dalla Palma, Ludovico; Castelli, Edoardo

    2004-05-01

    A system for in vivo breast imaging with monochromatic x-rays has been designed and built at the synchrotron radiation facility Elettra in Trieste (Italy) and will be operational in 2004. The system design involves the possibility of performing both planar mammography and breast tomography. In the present work, the first results obtained with a test set-up for breast tomography are shown and discussed. Tomographic images of in vitro breasts were acquired using monochromatic x-ray beams in the energy range 20-28 keV and a linear array silicon pixel detector. Tomograms were reconstructed using standard filtered backprojection algorithms; the effect of different filters was evaluated. The attenuation coefficients of fibroglandular and adipose tissue were measured, and a quantitative comparison of images acquired at different energies was performed by calculating the differential signal-to-noise ratio of fibroglandular details in adipose tissue. All images required a dose comparable to the dose delivered in clinical, conventional mammography and showed a high resolution of the breast structures without the overlapping effects that limit the visibility of the structures in 2D mammography. A quantitative evaluation of the images proves that the image quality at a given dose increases in the considered energy range and for the considered breast sizes. This work is dedicated to the memory of Paolo Poropat, who died tragically on June 8th, 2002. He was a brilliant experimental scientist and gave relevant contributions to the fields of high energy physics and medical physics. He had a very rich and versatile personality, a brilliant character, a big vitality. We will never forget him, his love of life, the passion and the enthusiasm he put into everything he did.

  19. Generation of attenuation map for MR-based attenuation correction of PET data in the head area employing 3D short echo time MR imaging

    NASA Astrophysics Data System (ADS)

    Khateri, Parisa; Salighe Rad, Hamidreza; Fathi, Anahita; Ay, Mohammad Reza

    2013-02-01

    Attenuation correction is a crucial step to get accurate quantification of Positron Emission Tomography (PET) data. An attenuation map to provide attenuation coefficients at 511 keV can be generated using Magnetic Resonance Images (MRI). One of the main steps involved in MR-based attenuation correction (MRAC) of PET data is to separate bone from air. Low signal intensity of bone in conventional MRI makes it difficult to separate bone from air in the head area, while their attenuation coefficients are very different. In literature, several groups proposed ultrashort echo-time (UTE) sequences to differentiate bone from air [4,5,7], because these sequences are capable of imaging tissues with short T2* relaxation time, such as cortical bone; however, they are difficult to use, expensive and time-consuming. Employing short echo-time (STE) MRI in combination with long echo-time (LTE) MRI, and along with high performance image processing algorithms is a good substitute for UTE-based PET attenuation correction; they are widely available, easy to use, inexpensive and much faster than UTE pulse sequences. In this work, we propose the use of STE sequences along with LTE ones, as well as a dedicated image processing method to differentiate bone from air cavities in the head area by creating contrast between the tissues. Attenuation coefficients at 511 kev, relying on literature [5], will then be assigned to the voxels. Acquisition was performed on a clinical 3T Tim Trio scanner (Siemens Medical Solution, Erlangen, Germany), employing a dual echo sequence. To achieve an optimized protocol with the best result for discrimination of bone and air, two types of acquisitions were performed, with and without fat suppression; the acquisition parameters were as follows: TE=1.21/5 ms, TR=5/17, FA=30, and TE=1.12/3.16 ms, TR=5/5, FA=12 for non-fat-suppressed and fat-suppressed protocol, respectively. Contrast enhancement and tissue segmentation were applied as processing steps, to

  20. Experiments With Magnetic Vector Potential

    ERIC Educational Resources Information Center

    Skinner, J. W.

    1975-01-01

    Describes the experimental apparatus and method for the study of magnetic vector potential (MVP). Includes a discussion of inherent errors in the calculations involved, precision of the results, and further applications of MVP. (GS)

  1. Electromagnetic structure of vector mesons

    NASA Astrophysics Data System (ADS)

    Adamuščín, C.; Dubnička, S.; Dubničková, A. Z.

    2014-11-01

    Electromagnetic structure of the complete nonet of vector mesons (ρ0, ρ+, ρ-, ω, ϕ, K*0, K*+, K¯*0, K*-) is investigated in the framework of the Unitary and Analytic model and insufficient experimental information on it is discussed.

  2. Polynomial interpretation of multipole vectors

    NASA Astrophysics Data System (ADS)

    Katz, Gabriel; Weeks, Jeff

    2004-09-01

    Copi, Huterer, Starkman, and Schwarz introduced multipole vectors in a tensor context and used them to demonstrate that the first-year Wilkinson microwave anisotropy probe (WMAP) quadrupole and octopole planes align at roughly the 99.9% confidence level. In the present article, the language of polynomials provides a new and independent derivation of the multipole vector concept. Bézout’s theorem supports an elementary proof that the multipole vectors exist and are unique (up to rescaling). The constructive nature of the proof leads to a fast, practical algorithm for computing multipole vectors. We illustrate the algorithm by finding exact solutions for some simple toy examples and numerical solutions for the first-year WMAP quadrupole and octopole. We then apply our algorithm to Monte Carlo skies to independently reconfirm the estimate that the WMAP quadrupole and octopole planes align at the 99.9% level.

  3. Brief history of vector Doppler

    NASA Astrophysics Data System (ADS)

    Dunmire, Barbrina; Beach, Kirk W.

    2001-05-01

    Since the development of the directional Doppler by McLeod in 1967, methods of acquiring, analyzing, and displaying blood velocity information have been under constant exploration. These efforts are motivated by a variety of interest and objectives including, to: a) simplify clinical examination, examiner training, and study interpretation, b) provide more hemodynamic information, and c) reduce examination variability and improve accuracy. The vector Doppler technique has been proposed as one potential avenue to achieve these objects. Vector Doppler systems are those that determine the true 2D or 3D blood flow velocity by combining multiple independent velocity component measurements. Most instruments can be divided into two broad categories: 1) cross-beam and 2) time-domain. This paper provides a brief synopsis of the progression of vector Doppler techniques, from its onset in 1970 to present, as well as possible avenues for future work. This is not intended to be a comprehensive review of all vector Doppler systems.

  4. EDITORIAL: Industrial Process Tomography

    NASA Astrophysics Data System (ADS)

    Anton Johansen, Geir; Wang, Mi

    2008-09-01

    There has been tremendous development within measurement science and technology over the past couple of decades. New sensor technologies and compact versatile signal recovery electronics are continuously expanding the limits of what can be measured and the accuracy with which this can be done. Miniaturization of sensors and the use of nanotechnology push these limits further. Also, thanks to powerful and cost-effective computer systems, sophisticated measurement and reconstruction algorithms previously only accessible in advanced laboratories are now available for in situ online measurement systems. The process industries increasingly require more process-related information, motivated by key issues such as improved process control, process utilization and process yields, ultimately driven by cost-effectiveness, quality assurance, environmental and safety demands. Industrial process tomography methods have taken advantage of the general progress in measurement science, and aim at providing more information, both quantitatively and qualitatively, on multiphase systems and their dynamics. The typical approach for such systems has been to carry out one local or bulk measurement and assume that this is representative of the whole system. In some cases, this is sufficient. However, there are many complex systems where the component distribution varies continuously and often unpredictably in space and time. The foundation of industrial tomography is to conduct several measurements around the periphery of a multiphase process, and use these measurements to unravel the cross-sectional distribution of the process components in time and space. This information is used in the design and optimization of industrial processes and process equipment, and also to improve the accuracy of multiphase system measurements in general. In this issue we are proud to present a selection of the 145 papers presented at the 5th World Congress on Industrial Process Tomography in Bergen

  5. SEISMIC ATTENUATION FOR RESERVOIR CHARACTERIZATION

    SciTech Connect

    Joel Walls; M.T. Taner; Naum Derzhi; Gary Mavko; Jack Dvorkin

    2003-12-01

    We have developed and tested technology for a new type of direct hydrocarbon detection. The method uses inelastic rock properties to greatly enhance the sensitivity of surface seismic methods to the presence of oil and gas saturation. These methods include use of energy absorption, dispersion, and attenuation (Q) along with traditional seismic attributes like velocity, impedance, and AVO. Our approach is to combine three elements: (1) a synthesis of the latest rock physics understanding of how rock inelasticity is related to rock type, pore fluid types, and pore microstructure, (2) synthetic seismic modeling that will help identify the relative contributions of scattering and intrinsic inelasticity to apparent Q attributes, and (3) robust algorithms that extract relative wave attenuation attributes from seismic data. This project provides: (1) Additional petrophysical insight from acquired data; (2) Increased understanding of rock and fluid properties; (3) New techniques to measure reservoir properties that are not currently available; and (4) Provide tools to more accurately describe the reservoir and predict oil location and volumes. These methodologies will improve the industry's ability to predict and quantify oil and gas saturation distribution, and to apply this information through geologic models to enhance reservoir simulation. We have applied for two separate patents relating to work that was completed as part of this project.

  6. Magnetoelectric Composite Based Microwave Attenuator

    NASA Astrophysics Data System (ADS)

    Tatarenko, A. S.; Srinivasan, G.

    2005-03-01

    Ferrite-ferroelectric composites are magnetoelectric (ME) due to their response to elastic and electromagnetic force fields. The ME composites are characterized by tensor permittivity, permeability and ME susceptibility. The unique combination of magnetic, electrical, and ME interactions, therefore, opens up the possibility of electric field tunable ferromagnetic resonance (FMR) based devices [1]. Here we discuss an ME attenuator operating at 9.3 GHz based on FMR in a layered sample consisting of lead magnesium niobate-lead titanate bonded to yttrium iron garnet (YIG) film on a gadolinium gallium garnet substrate. Electrical tuning is realized with the application of a control voltage due to ME effect; the shift is 0-15 Oe as E is increased from 0 to 3 kV/cm. If the attenuator is operated at FMR, the corresponding insertion loss will range from 25 dB to 2 dB. 1. S. Shastry and G. Srinivasan, M.I. Bichurin, V.M. Petrov, A.S. Tatarenko. Phys. Rev. B, 70 064416 (2004). - supported by grants the grants from the National Science Foundation (DMR-0302254), from Russian Ministry of Education (Å02-3.4-278) and from Universities of Russia Foundation (UNR 01.01.026).

  7. Unsupervised learning of binary vectors

    NASA Astrophysics Data System (ADS)

    Copelli Lopes da Silva, Mauro

    In this thesis, unsupervised learning of binary vectors from data is studied using methods from Statistical Mechanics of disordered systems. In the model, data vectors are distributed according to a single symmetry-breaking direction. The aim of unsupervised learning is to provide a good approximation to this direction. The difference with respect to previous studies is the knowledge that this preferential direction has binary components. It is shown that sampling from the posterior distribution (Gibbs learning) leads, for general smooth distributions, to an exponentially fast approach to perfect learning in the asymptotic limit of large number of examples. If the distribution is non-smooth, then first order phase transitions to perfect learning are expected. In the limit of poor performance, a second order phase transition ("retarded learning") is predicted to occur if the data distribution is not biased. Using concepts from Bayesian inference, the center of mass of the Gibbs ensemble is shown to have maximal average (Bayes-optimal) performance. This upper bound for continuous vectors is extended to a discrete space, resulting in the clipped center of mass of the Gibbs ensemble having maximal average performance among the binary vectors. To calculate the performance of this best binary vector, the geometric properties of the center of mass of binary vectors are studied. The surprising result is found that the center of mass of infinite binary vectors which obey some simple constraints, is again a binary vector. When disorder is taken into account in the calculation, however, a vector with continuous components is obtained. The performance of the best binary vector is calculated and shown to always lie above that of Gibbs learning and below the Bayes-optimal performance. Making use of a variational approach under the replica symmetric ansatz, an optimal potential is constructed in the limits of zero temperature and mutual overlap 1. Minimization of this potential

  8. Spatial distribution of intrinsic and scattering seismic attenuation in active volcanic islands - II: Deception Island images

    NASA Astrophysics Data System (ADS)

    Prudencio, Janire; Ibáñez, Jesús M.; García-Yeguas, Araceli; Del Pezzo, Edoardo; Posadas, Antonio M.

    2013-12-01

    In this work, we present regional maps of the inverse intrinsic quality factor (Qi-1), the inverse scattering quality factor (Qs-1) and total inverse quality factor (Qt-1) for the volcanic environment of Deception Island (Antarctica). Our attenuation study is based on diffusion approximation, which permits us to obtain the attenuation coefficients for every single couple source-receiver separately. The data set used in this research is derived from an active seismic experiment using more than 5200 offshore shots (air guns) recorded at 32 onshore seismic stations and four ocean bottom seismometers. To arrive at a regional distribution of these values, we used a new mapping technique based on a Gaussian space probability function. This approach led us to create `2-D probabilistic maps' of values of intrinsic and scattering seismic attenuation. The 2-D tomographic images confirm the existence of a high attenuation body below an inner bay of Deception Island. This structure, previously observed in 2-D and 3-D velocity tomography of the region, is associated with a massive magma reservoir. Magnetotelluric studies reach a similar interpretation of this strong anomaly. Additionally, we observed areas with lower attenuation effects that bear correlation with consolidated structures described in other studies and associated with the crystalline basement of the area. Our calculations of the transport mean-free path and absorption length for intrinsic attenuation gave respective values of ≈ 950 m and 5 km, which are lower than the values obtained in tectonic regions or volcanic areas such as Tenerife Island. However, as observed in other volcanic regions, our results indicate that scattering effects dominate strongly over the intrinsic attenuation.

  9. Effective Masses of Vector Polarons

    NASA Astrophysics Data System (ADS)

    Foell, Charles; Clougherty, Dennis

    2006-03-01

    We consider the vector polarons of a one-dimensional model of an electron in a doubly (or nearly) degenerate band that couples to two elastic distortions, as described previously by Clougherty and Foell [1]. A variational approach is used to analytically and numerically calculate effective masses of the three types of vector polarons. [1] D. P. Clougherty and C. A. Foell, Phys. Rev. B 70, 052301 (2004).

  10. Active and passive computed tomography for nondestructive assay

    SciTech Connect

    Bernardi, R T; Camp, D E; Clard, D; Jackson, J A; Martz, H E, Decman, D J; Roberson, G P

    1998-10-28

    Traditional gamma-ray methods used to characterize nuclear waste introduce errors that are related to non-uniform measurement responses associated with unknown radioactive source and matrix material distributions. These errors can be reduced by applying an active and passive tomographic technique (A&PCT) developed at the Lawrence Livermore National Laboratory (LLNL). The technique uses an external radioactive source and active tomography to map the attenuation within a waste barrel as a function of mono-energetic gamma-ray energy. Passive tomography is used to localize and identify specific radioactive waste within the same container. Reconstruction of the passive data using the attenuation maps at specific energies allows internal waste radioactivity to be corrected for any overlying heterogeneous materials, thus yielding an absolute assay of the waste activity. LLNL and Bio-Imaging Research, Inc. have collaborated in a technology transfer effort to integrate an A&PCT assay system into a mobile waste characterization trailer. This mobile system has participated in and passed several formal DOE-sponsored performance demonstrations, tests and evaluations. The system is currently being upgraded with multiple detectors to improve throughput, automated gamma-ray analysis code to simplify the assay, and a new emission reconstruction code to improve accuracy

  11. Axisymmetric Coanda-assisted vectoring

    NASA Astrophysics Data System (ADS)

    Allen, Dustin; Smith, Barton L.

    2009-01-01

    An experimental demonstration of a jet vectoring technique used in our novel spray method called Coanda-assisted Spray Manipulation (CSM) is presented. CSM makes use of the Coanda effect on axisymmetric geometries through the interaction of two jets: a primary jet and a control jet. The primary jet has larger volume flow rate but generally a smaller momentum flux than the control jet. The primary jet flows through the center of a rounded collar. The control jet is parallel to the primary and is adjacent to the convex collar. The Reynolds number range for the primary jet at the exit plane was between 20,000 and 80,000. The flow was in the incompressible Mach number range (Mach < 0.3). The control jet attaches to the convex wall and vectors according to known Coanda effect principles, entraining and vectoring the primary jet, resulting in controllable r - θ directional spraying. Several annular control slots and collar radii were tested over a range of momentum flux ratios to determine the effects of these variables on the vectored jet angle and spreading. Two and Three-component Particle Image Velocimetry systems were used to determine the vectoring angle and the profile of the combined jet in each experiment. The experiments show that the control slot and expansion radius, along with the momentum ratios of the two jets predominantly affected the vectoring angle and profile of the combined jets.

  12. Vectoring of parallel synthetic jets

    NASA Astrophysics Data System (ADS)

    Berk, Tim; Ganapathisubramani, Bharathram; Gomit, Guillaume

    2015-11-01

    A pair of parallel synthetic jets can be vectored by applying a phase difference between the two driving signals. The resulting jet can be merged or bifurcated and either vectored towards the actuator leading in phase or the actuator lagging in phase. In the present study, the influence of phase difference and Strouhal number on the vectoring behaviour is examined experimentally. Phase-locked vorticity fields, measured using Particle Image Velocimetry (PIV), are used to track vortex pairs. The physical mechanisms that explain the diversity in vectoring behaviour are observed based on the vortex trajectories. For a fixed phase difference, the vectoring behaviour is shown to be primarily influenced by pinch-off time of vortex rings generated by the synthetic jets. Beyond a certain formation number, the pinch-off timescale becomes invariant. In this region, the vectoring behaviour is determined by the distance between subsequent vortex rings. We acknowledge the financial support from the European Research Council (ERC grant agreement no. 277472).

  13. Sustained expression from DNA vectors.

    PubMed

    Wong, Suet Ping; Argyros, Orestis; Harbottle, Richard P

    2015-01-01

    DNA vectors have the potential to become powerful medical tools for treatment of human disease. The human body has, however, developed a range of defensive strategies to detect and silence foreign or misplaced DNA, which is more typically encountered during infection or chromosomal damage. A clinically relevant human gene therapy vector must overcome or avoid these protections whilst delivering sustained levels of therapeutic gene product without compromising the vitality of the recipient host. Many non-viral DNA vectors trigger these defense mechanisms and are subsequently destroyed or rendered silent. Thus, without modification or considered design, the clinical utility of a typical DNA vector is fundamentally limited due to the transient nature of its transgene expression. The development of safe and persistently expressing DNA vectors is a crucial prerequisite for its successful clinical application and subsequently remains, therefore, one of the main strategic tasks of non-viral gene therapy research. In this chapter we will describe our current understanding of the mechanisms that can destroy or silence DNA vectors and discuss strategies, which have been utilized to improve their sustenance and the level and duration of their transgene expression.

  14. 4-D Photoacoustic Tomography

    NASA Astrophysics Data System (ADS)

    Xiang, Liangzhong; Wang, Bo; Ji, Lijun; Jiang, Huabei

    2013-01-01

    Photoacoustic tomography (PAT) offers three-dimensional (3D) structural and functional imaging of living biological tissue with label-free, optical absorption contrast. These attributes lend PAT imaging to a wide variety of applications in clinical medicine and preclinical research. Despite advances in live animal imaging with PAT, there is still a need for 3D imaging at centimeter depths in real-time. We report the development of four dimensional (4D) PAT, which integrates time resolutions with 3D spatial resolution, obtained using spherical arrays of ultrasonic detectors. The 4D PAT technique generates motion pictures of imaged tissue, enabling real time tracking of dynamic physiological and pathological processes at hundred micrometer-millisecond resolutions. The 4D PAT technique is used here to image needle-based drug delivery and pharmacokinetics. We also use this technique to monitor 1) fast hemodynamic changes during inter-ictal epileptic seizures and 2) temperature variations during tumor thermal therapy.

  15. Characterization of an attenuated TE3L-deficient vaccinia virus Tian Tan strain.

    PubMed

    Wang, Yuhang; Kan, Shifu; Du, Shouwen; Qi, Yanxin; Wang, Jinhui; Liu, Liming; Ji, Huifan; He, Dongyun; Wu, Na; Li, Chang; Chi, Baorong; Li, Xiao; Jin, Ningyi

    2012-12-01

    An attenuated vaccinia virus (VACV), TE3L(-)VTT, was evaluated for virulence and safety to determine its potential use as a vaccine or as a recombinant virus vector to express foreign genes. The virulence of TE3L(-)VTT was compared with that of the wild-type VTT both in vivo and in vitro. The humoral and cellular immune responses were detected in a mouse model to test the vaccine efficacy of the TE3L mutant. The results suggested that deletion of the TE3L gene decreased the virulence and neurovirulence significantly in mice and rabbit models, yet retained the immunogenicity. Thus, the deletion of TE3L improved the safety of the VTT vector; this approach may yield a valuable resource for studies of recombinant VACV-vectored vaccines.

  16. Global Adjoint Tomography

    NASA Astrophysics Data System (ADS)

    Bozdag, Ebru; Lefebvre, Matthieu; Lei, Wenjie; Peter, Daniel; Smith, James; Komatitsch, Dimitri; Tromp, Jeroen

    2015-04-01

    We will present our initial results of global adjoint tomography based on 3D seismic wave simulations which is one of the most challenging examples in seismology in terms of intense computational requirements and vast amount of high-quality seismic data that can potentially be assimilated in inversions. Using a spectral-element method, we incorporate full 3D wave propagation in seismic tomography by running synthetic seismograms and adjoint simulations to compute exact sensitivity kernels in realistic 3D background models. We run our global simulations on the Oak Ridge National Laboratory's Cray XK7 "Titan" system taking advantage of the GPU version of the SPECFEM3D_GLOBE package. We have started iterations with initially selected 253 earthquakes within the magnitude range of 5.5 < Mw < 7.0 and numerical simulations having resolution down to ~27 s to invert for a transversely isotropic crust and mantle model using a non-linear conjugate gradient algorithm. The measurements are currently based on frequency-dependent traveltime misfits. We use both minor- and major-arc body and surface waves by running 200 min simulations where inversions are performed with more than 2.6 million measurements. Our initial results after 12 iterations already indicate several prominent features such as enhanced slab (e.g., Hellenic, Japan, Bismarck, Sandwich), plume/hotspot (e.g., the Pacific superplume, Caroline, Yellowstone, Hawaii) images, etc. To improve the resolution and ray coverage, particularly in the lower mantle, our aim is to increase the resolution of numerical simulations first going down to ~17 s and then to ~9 s to incorporate high-frequency body waves in inversions. While keeping track of the progress and illumination of features in our models with a limited data set, we work towards to assimilate all available data in inversions from all seismic networks and earthquakes in the global CMT catalogue.

  17. Global Attenuation Model of the Upper Mantle

    NASA Astrophysics Data System (ADS)

    Adenis, A.; Debayle, E.; Ricard, Y. R.

    2015-12-01

    We present a three-dimensional shear attenuation model based on a massive surface wave data-set (372,629 Rayleigh waveforms analysed in the period range 50-300s by Debayle and Ricard, 2012). For each seismogram, this approach yields depth-dependent path average models of shear velocity and quality factor, and a set of fundamental and higher-mode dispersion and attenuation curves. We combine these attenuation measurements in a tomographic inversion after a careful rejection of the noisy data. We first remove data likely to be biased by a poor knowledge of the source. Then we assume that waves corresponding to events having close epicenters and recorded at the same station sample the same elastic and anelastic structure, we cluster the corresponding rays and average the attenuation measurements. Logarithms of the attenuations are regionalized using the non-linear east square formalism of Tarantola and Valette (1982), resulting in attenuation tomographic maps between 50s and 300s. After a first inversion, outlyers are rejected and a second inversion yields a moderate variance reduction of about 20%. We correct the attenuation curves for focusing effect using the linearized ray theory of Woodhouse and Wong (1986). Accounting for focussing effects allows building tomographic maps with variance reductions reaching 40%. In the period range 120-200s, the root mean square of the model perturbations increases from about 5% to 20%. Our 3-D attenuation models present strong agreement with surface tectonics at period lower than 200s. Areas of low attenuation are located under continents and areas of high attenuation are associated with oceans. Surprisingly, although mid oceanic ridges are located in attenuating regions, their signature, even if enhanced by focusing corrections, remains weaker than in the shear velocity models. Synthetic tests suggests that regularisation contributes to damp the attenuation signature of ridges, which could therefore be underestimated.

  18. General relationships between ultrasonic attenuation and dispersion

    NASA Technical Reports Server (NTRS)

    Odonnell, M.; Jaynes, E. T.; Miller, J. G.

    1978-01-01

    General relationships between the ultrasonic attenuation and dispersion are presented. The validity of these nonlocal relationships hinges only on the properties of causality and linearity, and does not depend upon details of the mechanism responsible for the attenuation and dispersion. Approximate, nearly local relationships are presented and are demonstrated to predict accurately the ultrasonic dispersion in solutions of hemoglobin from the results of attenuation measurements.

  19. Exact Reconstruction From Uniformly Attenuated Helical Cone-Beam Projections in SPECT

    SciTech Connect

    Gullberg, Grant T; Huang, Qiu; You, Jiangsheng; Zeng, Gengsheng L.

    2008-12-18

    In recent years the development of cone-beam reconstruction algorithms has been an active research area in x-ray computed tomography (CT), and significant progress has been made in the advancement of algorithms. Theoretically exact and computationally efficient analytical algorithms can be found in the literature. However, in single photon emission computed tomography (SPECT), published cone-beam reconstruction algorithms are either approximate or involve iterative methods. The SPECT reconstruction problem is more complicated due to degradations in the imaging detection process, one of which is the effect of attenuation of gamma ray photons. Attenuation should be compensated for to obtain quantitative results. In this paper, an analytical reconstruction algorithm for uniformly attenuated cone-beam projection data is presented for SPECT imaging. The algorithm adopts the DBH method, a procedure consisting of differentiation and backprojection followed by a finite inverse cosh-weighted Hilbert transform. The significance of the proposed approach is that a selected region of interest can be reconstructed even with a detector with a reduced field of view. The algorithm is designed for a general trajectory. However, to validate the algorithm, a numerical study was performed using a helical trajectory. The implementation is efficient and the simulation result is promising.

  20. Differential dust attenuation in CALIFA galaxies

    NASA Astrophysics Data System (ADS)

    Vale Asari, N.; Cid Fernandes, R.; Amorim, A. L.; Lacerda, E. A. D.; Schlickmann, M.; Wild, V.; Kennicutt, R. C.

    2016-06-01

    Dust attenuation has long been treated as a simple parameter in SED fitting. Real galaxies are, however, much more complicated: The measured dust attenuation is not a simple function of the dust optical depth, but depends strongly on galaxy inclination and the relative distribution of stars and dust. We study the nebular and stellar dust attenuation in CALIFA galaxies, and propose some empirical recipes to make the dust treatment more realistic in spectral synthesis codes. By adding optical recombination emission lines, we find better constraints for differential attenuation. Those recipes can be applied to unresolved galaxy spectra, and lead to better recovered star formation rates.

  1. Are Bred Vectors The Same As Lyapunov Vectors?

    NASA Astrophysics Data System (ADS)

    Kalnay, E.; Corazza, M.; Cai, M.

    Regional loss of predictability is an indication of the instability of the underlying flow, where small errors in the initial conditions (or imperfections in the model) grow to large amplitudes in finite times. The stability properties of evolving flows have been studied using Lyapunov vectors (e.g., Alligood et al, 1996, Ott, 1993, Kalnay, 2002), singular vectors (e.g., Lorenz, 1965, Farrell, 1988, Molteni and Palmer, 1993), and, more recently, with bred vectors (e.g., Szunyogh et al, 1997, Cai et al, 2001). Bred vectors (BVs) are, by construction, closely related to Lyapunov vectors (LVs). In fact, after an infinitely long breeding time, and with the use of infinitesimal ampli- tudes, bred vectors are identical to leading Lyapunov vectors. In practical applications, however, bred vectors are different from Lyapunov vectors in two important ways: a) bred vectors are never globally orthogonalized and are intrinsically local in space and time, and b) they are finite-amplitude, finite-time vectors. These two differences are very significant in a dynamical system whose size is very large. For example, the at- mosphere is large enough to have "room" for several synoptic scale instabilities (e.g., storms) to develop independently in different regions (say, North America and Aus- tralia), and it is complex enough to have several different possible types of instabilities (such as barotropic, baroclinic, convective, and even Brownian motion). Bred vectors share some of their properties with leading LVs (Corazza et al, 2001a, 2001b, Toth and Kalnay, 1993, 1997, Cai et al, 2001). For example, 1) Bred vectors are independent of the norm used to define the size of the perturba- tion. Corazza et al. (2001) showed that bred vectors obtained using a potential enstro- phy norm were indistinguishable from bred vectors obtained using a streamfunction squared norm, in contrast with singular vectors. 2) Bred vectors are independent of the length of the rescaling period as long as the

  2. Quantum-polarization state tomography

    NASA Astrophysics Data System (ADS)

    Bayraktar, Ömer; Swillo, Marcin; Canalias, Carlota; Björk, Gunnar

    2016-08-01

    We propose and demonstrate a method for quantum-state tomography of qudits encoded in the quantum polarization of N -photon states. This is achieved by distributing N photons nondeterministically into three paths and their subsequent projection, which for N =1 is equivalent to measuring the Stokes (or Pauli) operators. The statistics of the recorded N -fold coincidences determines the unknown N -photon polarization state uniquely. The proposed, fixed setup manifestly rules out any systematic measurement errors due to moving components and allows for simple switching between tomography of different states, which makes it ideal for adaptive tomography schemes.

  3. Computed tomography of the body

    SciTech Connect

    Lee, J.K.T.; Stanley, R.J.

    1982-01-01

    By the end of the fourth year of clinical use, the number of articles dealing with computed body tomography (CT) had increased exponentially. Over 100 articles were published during this review period. This chapter examines new application of CT in the neck, musculoskeletal system and the breast. The chapter begins with an examination of the technical aspects of the operation and performance of CT scanners during this review period. The anatomy of various regions of the body, such as neck, chest, liver and biliary system, genitourinary tract, and pelvis are examined. Brief discussions of pediatric computed tomography, computed tomography-guided biopsy, and radiation therapy are presented. (KRM)

  4. Origins of anisotropic seismic attenuation of the inner core - intrinsic anelasticity of hcp iron alloy

    NASA Astrophysics Data System (ADS)

    Redfern, Simon

    2015-04-01

    seismic attenuation. Zener relaxation magnitude scales with solute concentration and is consistent with around 5% light element. Variations in attenuation are expected in a core with spatially varying concentrations of light element, and attenuation tomography of the inner core could, therefore, be employed to map chemical heterogeneity.

  5. Black holes with vector hair

    NASA Astrophysics Data System (ADS)

    Fan, Zhong-Ying

    2016-09-01

    In this paper, we consider Einstein gravity coupled to a vector field, either minimally or non-minimally, together with a vector potential of the type V = 2{Λ}_0+1/2{m}^2{A}^2 + {γ}_4{A}^4 . For a simpler non-minimally coupled theory with Λ0 = m = γ4 = 0, we obtain both extremal and non-extremal black hole solutions that are asymptotic to Minkowski space-times. We study the global properties of the solutions and derive the first law of thermodynamics using Wald formalism. We find that the thermodynamical first law of the extremal black holes is modified by a one form associated with the vector field. In particular, due to the existence of the non-minimal coupling, the vector forms thermodynamic conjugates with the graviton mode and partly contributes to the one form modifying the first law. For a minimally coupled theory with Λ0 ≠ 0, we also obtain one class of asymptotically flat extremal black hole solutions in general dimensions. This is possible because the parameters ( m 2 , γ4) take certain values such that V = 0. In particular, we find that the vector also forms thermodynamic conjugates with the graviton mode and contributes to the corresponding first law, although the non-minimal coupling has been turned off. Thus all the extremal black hole solutions that we obtain provide highly non-trivial examples how the first law of thermodynamics can be modified by a either minimally or non-minimally coupled vector field. We also study Gauss-Bonnet gravity non-minimally coupled to a vector and obtain asymptotically flat black holes and Lifshitz black holes.

  6. Using Distant Sources in Local Seismic Tomography

    NASA Astrophysics Data System (ADS)

    Julian, Bruce; Foulgr, Gillian

    2014-05-01

    Seismic tomography methods such as the 'ACH' method of Aki, Christoffersson & Husebye (1976, 1977) are subject to significant bias caused by the unknown wave-speed structure outside the study volume, whose effects are mathematically of the same order as the local-structure effects being studied. Computational experiments using whole-mantle wave-speed models show that the effects are also of comparable numerical magnitude (Masson & Trampert, 1997). Failure to correct for these effects will significantly corrupt computed local structures. This bias can be greatly reduced by solving for additional parameters defining the shapes, orientations, and arrival times of the incident wavefronts. The procedure is exactly analogous to solving for hypocentral locations in local-earthquake tomography. For planar incident wavefronts, each event adds three free parameters and the forward problem is surprisingly simple: The first-order change in the theoretical arrival time at observation point B resulting from perturbations in the incident-wave time t0 and slowness vector s is δtB ≡ δt0 + δs · rA = δtA, the change in the time of the plane wave at the point A where the un-perturbed ray enters the study volume (Julian and Foulger, submitted). This consequence of Fermat's principle apparently has not previously been recognized. In addition to eliminating the biasing effect of structure outside the study volume, this formalism enables us to combine data from local and distant events in studies of local structure, significantly improving resolution of deeper structure, particularly in places such as volcanic and geothermal areas where seismicity is confined to shallow depths. Many published models that were derived using ACH and similar methods probably contain significant artifacts and are in need of re-evaluation.

  7. Super-sensing through industrial process tomography

    PubMed Central

    2016-01-01

    In this introduction article, we present a brief overview of industrial process tomography. This will start by linking between the concept of industrial process tomography and super-sensing. This will follow with a brief introduction to various process tomography systems and in particular electrical tomography methods. This article is part of the themed issue ‘Supersensing through industrial process tomography’. PMID:27185965

  8. SEISMIC ATTENUATION FOR RESERVOIR CHARACTERIZATION

    SciTech Connect

    Joel Walls; M.T. Taner; Naum Derzhi; Gary Mavko; Jack Dvorkin

    2002-10-01

    RSI has access to two synthetic seismic programs: Osiris seismic modeling system provided by Odegaard (Osiris) and synthetic seismic program, developed by SRB, implementing the Kennett method for normal incidence. Achieving virtually identical synthetic seismic traces from these different programs serves as cross-validation for both. The subsequent experiments have been performed with the Kennett normal incidence code because: We have access to the source code, which allowed us to easily control computational parameters and integrate the synthetics computations with our graphical and I/O systems. This code allows to perform computations and displays on a PC in MatLab or Octave environment, which is faster and more convenient. The normal incidence model allows us to exclude from the synthetic traces some of the physical effects that take place in 3-D models (like inhomogeneous waves) but have no relevance to the topic of our investigation, which is attenuation effects on seismic reflection and transmission.

  9. VectorBase: a home for invertebrate vectors of human pathogens.

    PubMed

    Lawson, Daniel; Arensburger, Peter; Atkinson, Peter; Besansky, Nora J; Bruggner, Robert V; Butler, Ryan; Campbell, Kathryn S; Christophides, George K; Christley, Scott; Dialynas, Emmanuel; Emmert, David; Hammond, Martin; Hill, Catherine A; Kennedy, Ryan C; Lobo, Neil F; MacCallum, M Robert; Madey, Greg; Megy, Karine; Redmond, Seth; Russo, Susan; Severson, David W; Stinson, Eric O; Topalis, Pantelis; Zdobnov, Evgeny M; Birney, Ewan; Gelbart, William M; Kafatos, Fotis C; Louis, Christos; Collins, Frank H

    2007-01-01

    VectorBase (http://www.vectorbase.org/) is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes providing an integrated resource for the research community. Currently, VectorBase contains genome information for two organisms: Anopheles gambiae, a vector for the Plasmodium protozoan agent causing malaria, and Aedes aegypti, a vector for the flaviviral agents causing Yellow fever and Dengue fever.

  10. Feasibility study of archaeological structures scanning by muon tomography

    NASA Astrophysics Data System (ADS)

    Gómez, H.; Carloganu, C.; Gibert, D.; Marteau, J.; Niess, V.; Katsanevas, S.; Tonazzo, A.

    2015-08-01

    One of the main concerns in archaeology is to find of a method to study precisely archaeological structures in the least invasive way possible to avoid damage. The requirement of preserving the structures integrity prevents, in the case of pyramids or tumuli, the study of any internal structure (halls or tombs) which are not reachable by existing corridors. One non-invasive method is the muon tomography. By placing a detector which allows to register the muon direction after the structure, it is possible to have an idea of its composition based on the attenuation of the muon flux, which depends on the material length and density that muons have crossed. This technique, alone or together with other exploration techniques as seismic tomography or electrical resistivity tomography, can provide useful information about the internal structure of the archaeological form that can not be obtained by conventional archaeological methods. In this work, the time measurement necessary to obtain a significant result about the composition of an archaeological structure is estimated. To do that, a Monte Carlo simulation framework based on the MUSIC software, properly tuned for this study, has been developed. The particular case of the Kastas Amfipoli Macedonian tumulus has been considered to perform the simulations.

  11. Initial water quantification results using neutron computed tomography

    NASA Astrophysics Data System (ADS)

    Heller, A. K.; Shi, L.; Brenizer, J. S.; Mench, M. M.

    2009-06-01

    Neutron computed tomography is an important imaging tool in the field of non-destructive testing and in fundamental research for many engineering applications. Contrary to X-rays, neutrons can be attenuated by some light materials, such as hydrogen, but can penetrate many heavy materials. Thus, neutron computed tomography is useful in obtaining important three-dimensional information about a sample's interior structure and material properties that other traditional methods cannot provide. The neutron computed tomography system at the Pennsylvania State University's Radiation Science and Engineering Center is being utilized to develop a water quantification technique for investigation of water distribution in fuel cells under normal conditions. A hollow aluminum cylinder test sample filled with a known volume of water was constructed for purposes of testing the quantification technique. Transmission images of the test sample at different angles were easily acquired through the synthesis of a dedicated image acquisition computer driving a rotary table controller and an in-house developed synchronization software package. After data acquisition, Octopus (version 8.2) and VGStudio Max (version 1.2) were used to perform cross-sectional and three-dimensional reconstructions of the sample, respectively. The initial reconstructions and water quantification results are presented.

  12. Feasibility study of archaeological structures scanning by muon tomography

    SciTech Connect

    Gómez, H.; Katsanevas, S.; Tonazzo, A.; Carloganu, C.; Niess, V.; Gibert, D.; Marteau, J.

    2015-08-17

    One of the main concerns in archaeology is to find of a method to study precisely archaeological structures in the least invasive way possible to avoid damage. The requirement of preserving the structures integrity prevents, in the case of pyramids or tumuli, the study of any internal structure (halls or tombs) which are not reachable by existing corridors. One non-invasive method is the muon tomography. By placing a detector which allows to register the muon direction after the structure, it is possible to have an idea of its composition based on the attenuation of the muon flux, which depends on the material length and density that muons have crossed. This technique, alone or together with other exploration techniques as seismic tomography or electrical resistivity tomography, can provide useful information about the internal structure of the archaeological form that can not be obtained by conventional archaeological methods. In this work, the time measurement necessary to obtain a significant result about the composition of an archaeological structure is estimated. To do that, a Monte Carlo simulation framework based on the MUSIC software, properly tuned for this study, has been developed. The particular case of the Kastas Amfipoli Macedonian tumulus has been considered to perform the simulations.

  13. The biological control of disease vectors.

    PubMed

    Okamoto, Kenichi W; Amarasekare, Priyanga

    2012-09-21

    Vector-borne diseases are common in nature and can have a large impact on humans, livestock and crops. Biological control of vectors using natural enemies or competitors can reduce vector density and hence disease transmission. However, the indirect interactions inherent in host-vector disease systems make it difficult to use traditional pest control theory to guide biological control of disease vectors. This necessitates a conceptual framework that explicitly considers a range of indirect interactions between the host-vector disease system and the vector's biological control agent. Here we conduct a comparative analysis of the efficacy of different types of biological control agents in controlling vector-borne diseases. We report three key findings. First, highly efficient predators and parasitoids of the vector prove to be effective biological control agents, but highly virulent pathogens of the vector also require a high transmission rate to be effective. Second, biocontrol agents can successfully reduce long-term host disease incidence even though they may fail to reduce long-term vector densities. Third, inundating a host-vector disease system with a natural enemy of the vector has little or no effect on reducing disease incidence, but inundating the system with a competitor of the vector has a large effect on reducing disease incidence. The comparative framework yields predictions that are useful in developing biological control strategies for vector-borne diseases. We discuss how these predictions can inform ongoing biological control efforts for host-vector disease systems.

  14. Learning with LOGO: Logo and Vectors.

    ERIC Educational Resources Information Center

    Lough, Tom; Tipps, Steve

    1986-01-01

    This is the first of a two-part series on the general concept of vector space. Provides tool procedures to allow investigation of vector properties, vector addition and subtraction, and X and Y components. Lists several sources of additional vector ideas. (JM)

  15. Quantitative contrast-enhanced optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Winetraub, Yonatan; SoRelle, Elliott D.; Liba, Orly; de la Zerda, Adam

    2016-01-01

    We have developed a model to accurately quantify the signals produced by exogenous scattering agents used for contrast-enhanced Optical Coherence Tomography (OCT). This model predicts distinct concentration-dependent signal trends that arise from the underlying physics of OCT detection. Accordingly, we show that real scattering particles can be described as simplified ideal scatterers with modified scattering intensity and concentration. The relation between OCT signal and particle concentration is approximately linear at concentrations lower than 0.8 particle per imaging voxel. However, at higher concentrations, interference effects cause signal to increase with a square root dependence on the number of particles within a voxel. Finally, high particle concentrations cause enough light attenuation to saturate the detected signal. Predictions were validated by comparison with measured OCT signals from gold nanorods (GNRs) prepared in water at concentrations ranging over five orders of magnitude (50 fM to 5 nM). In addition, we validated that our model accurately predicts the signal responses of GNRs in highly heterogeneous scattering environments including whole blood and living animals. By enabling particle quantification, this work provides a valuable tool for current and future contrast-enhanced in vivo OCT studies. More generally, the model described herein may inform the interpretation of detected signals in modalities that rely on coherence-based detection or are susceptible to interference effects.

  16. Vector Encoding in Biochemical Networks

    NASA Astrophysics Data System (ADS)

    Potter, Garrett; Sun, Bo

    Encoding of environmental cues via biochemical signaling pathways is of vital importance in the transmission of information for cells in a network. The current literature assumes a single cell state is used to encode information, however, recent research suggests the optimal strategy utilizes a vector of cell states sampled at various time points. To elucidate the optimal sampling strategy for vector encoding, we take an information theoretic approach and determine the mutual information of the calcium signaling dynamics obtained from fibroblast cells perturbed with different concentrations of ATP. Specifically, we analyze the sampling strategies under the cases of fixed and non-fixed vector dimension as well as the efficiency of these strategies. Our results show that sampling with greater frequency is optimal in the case of non-fixed vector dimension but that, in general, a lower sampling frequency is best from both a fixed vector dimension and efficiency standpoint. Further, we find the use of a simple modified Ornstein-Uhlenbeck process as a model qualitatively captures many of our experimental results suggesting that sampling in biochemical networks is based on a few basic components.

  17. A generalized nonlocal vector calculus

    NASA Astrophysics Data System (ADS)

    Alali, Bacim; Liu, Kuo; Gunzburger, Max

    2015-10-01

    A nonlocal vector calculus was introduced in Du et al. (Math Model Meth Appl Sci 23:493-540, 2013) that has proved useful for the analysis of the peridynamics model of nonlocal mechanics and nonlocal diffusion models. A formulation is developed that provides a more general setting for the nonlocal vector calculus that is independent of particular nonlocal models. It is shown that general nonlocal calculus operators are integral operators with specific integral kernels. General nonlocal calculus properties are developed, including nonlocal integration by parts formula and Green's identities. The nonlocal vector calculus introduced in Du et al. (Math Model Meth Appl Sci 23:493-540, 2013) is shown to be recoverable from the general formulation as a special example. This special nonlocal vector calculus is used to reformulate the peridynamics equation of motion in terms of the nonlocal gradient operator and its adjoint. A new example of nonlocal vector calculus operators is introduced, which shows the potential use of the general formulation for general nonlocal models.

  18. Generalized Selection Weighted Vector Filters

    NASA Astrophysics Data System (ADS)

    Lukac, Rastislav; Plataniotis, Konstantinos N.; Smolka, Bogdan; Venetsanopoulos, Anastasios N.

    2004-12-01

    This paper introduces a class of nonlinear multichannel filters capable of removing impulsive noise in color images. The here-proposed generalized selection weighted vector filter class constitutes a powerful filtering framework for multichannel signal processing. Previously defined multichannel filters such as vector median filter, basic vector directional filter, directional-distance filter, weighted vector median filters, and weighted vector directional filters are treated from a global viewpoint using the proposed framework. Robust order-statistic concepts and increased degree of freedom in filter design make the proposed method attractive for a variety of applications. Introduced multichannel sigmoidal adaptation of the filter parameters and its modifications allow to accommodate the filter parameters to varying signal and noise statistics. Simulation studies reported in this paper indicate that the proposed filter class is computationally attractive, yields excellent performance, and is able to preserve fine details and color information while efficiently suppressing impulsive noise. This paper is an extended version of the paper by Lukac et al. presented at the 2003 IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP '03) in Grado, Italy.

  19. Vectors for cancer gene therapy.

    PubMed

    Zhang, J; Russell, S J

    1996-09-01

    Many viral and non-viral vector systems have now been developed for gene therapy applications. In this article, the pros and cons of these vector systems are discussed in relation to the different cancer gene therapy strategies. The protocols used in cancer gene therapy can be broadly divided into six categories including gene transfer to explanted cells for use as cell-based cancer vaccines; gene transfer to a small number of tumour cells in situ to achieve a vaccine effect; gene transfer to vascular endothelial cells (VECs) lining the blood vessels of the tumour to interfere with tumour angiogenesis; gene transfer to T lymphocytes to enhance their antitumour effector capability; gene transfer to haemopoietic stem cells (HSCs) to enhance their resistance to cytotoxic drugs and gene transfer to a large number of tumour cells in situ to achieve nonimmune tumour reduction with or without bystander effect. Each of the six strategies makes unique demands on the vector system and these are discussed with reference to currently available vectors. Aspects of vector biology that are in need of further development are discussed in some detail. The final section points to the potential use of replicating viruses as delivery vehicles for efficient in vivo gene transfer to disseminated cancers.

  20. Optical coherence tomography: a new strategy to image planarian regeneration.

    PubMed

    Lin, Yu-Sheng; Chu, Chin-Chou; Lin, Jen-Jen; Chang, Chien-Cheng; Wang, Chun-Chieh; Wang, Chiao-Yin; Tsui, Po-Hsiang

    2014-09-10

    The planarian is widely used as a model for studying tissue regeneration. In this study, we used optical coherence tomography (OCT) for the real-time, high-resolution imaging of planarian tissue regeneration. Five planaria were sliced transversely to produce 5 head and 5 tail fragments. During a 2-week regeneration period, OCT images of the planaria were acquired to analyze the signal attenuation rates, intensity ratios, and image texture features (including contrast, correlation, homogeneity, energy, and entropy) to compare the primitive and regenerated tissues. In the head and tail fragments, the signal attenuation rates of the regenerated fragments decreased from -0.2 dB/μm to -0.05 dB/μm, between Day 1 and Day 6, and then increased to -0.2 dB/μm on Day 14. The intensity ratios decreased to approximately 0.8 on Day 6, and increased to between 0.8 and 0.9 on Day 14. The texture parameters of contrast, correlation, and homogeneity exhibited trends similar to the signal attenuation rates and intensity ratios during the planarian regeneration. The proposed OCT parameters might provide biological information regarding cell apoptosis and the formation of a mass of new cells during planarian regeneration. Therefore, OCT imaging is a potentially effective method for planarian studies.

  1. Computed tomography of the prostate.

    PubMed

    Van Engelshoven, J M; Kreel, L

    1979-02-01

    The conventional anatomy of the prostate is reviewed and the computed tomography (CT) anatomy described and illustrated. The results of 55 "normal" cases were analyzed for size and relationship to the symphysis pubis, retropubic space, and bladder, as shown on CT sections correlating the features with age and possible urinary symptoms. Attention is also drawn to the differences between phleboliths and prostatic calcification. Computed tomography is an effective method of demonstrating the prostate and surrounding structures and of assessing prostatic enlargement.

  2. LONG TERM MONITORING FOR NATURAL ATTENUATION

    EPA Science Inventory

    We have good statistical methods to: (1) determine whether concentrations of a contaminant are attenuating over time, (2) determine the rate of attenuation and confidence interval on the rate, and (3) determine whether concentrations have met a particular clean up goal. We do no...

  3. Acoustic wave propagation in uniform glow discharge plasma at an arbitrary angle between the electric field and wave vectors

    SciTech Connect

    Soukhomlinov, Vladimir; Gerasimov, Nikolay; Sheverev, Valery A.

    2008-08-15

    This paper extends the recently reported one-dimensional model for sound propagation in glow discharge plasma to arbitrary mutual orientation of the plasma electric field and acoustic wave vectors. The results demonstrate that an acoustic wave in plasma may amplify, attenuate, or remain unchanged depending on the angle between these vectors and on the power input into the discharge. Quantitative evaluations indicate that for glow discharge plasma of a self-sustained discharge in air at the electric current densities of the order of 100 mA cm{sup -2}, a gain of as much as 1 m{sup -1} at 0 deg. angle between the vectors changes to similar strength attenuation for the 90 deg. angle.

  4. Problems of Objects Identification in Three-dimensional X-ray Tomography

    NASA Astrophysics Data System (ADS)

    Mamyrbayev, T.; Batranin, A.; Ivashkov, D.

    2016-01-01

    X-ray computed tomography is a unique non-destructive technique which is suitable for dimensional measurements and quality testing. X-ray tomography is applied widely not only in the traditional medical area, but in natural science and engineering fields. The result of tomography is a volumetric map of attenuation coefficients which has, in fact, a limited practical sense. Usually, segmentation that converts the map into binary objects by means of threshold value is applied. In this paper we discuss the some key features of segmentation applied to a test object which is gravel composed of unconsolidated rock fragments. Gravel appeared to be a challenging object for segmentation and image recognition. One of effective approach for image processing of tomographic data, among many possible ones, is presented in this paper.

  5. Coded aperture x-ray diffraction imaging with transmission computed tomography side-information

    NASA Astrophysics Data System (ADS)

    Odinaka, Ikenna; Greenberg, Joel A.; Kaganovsky, Yan; Holmgren, Andrew; Hassan, Mehadi; Politte, David G.; O'Sullivan, Joseph A.; Carin, Lawrence; Brady, David J.

    2016-03-01

    Coded aperture X-ray diffraction (coherent scatter spectral) imaging provides fast and dose-efficient measurements of the molecular structure of an object. The information provided is spatially-dependent and material-specific, and can be utilized in medical applications requiring material discrimination, such as tumor imaging. However, current coded aperture coherent scatter spectral imaging system assume a uniformly or weakly attenuating object, and are plagued by image degradation due to non-uniform self-attenuation. We propose accounting for such non-uniformities in the self-attenuation by utilizing an X-ray computed tomography (CT) image (reconstructed attenuation map). In particular, we present an iterative algorithm for coherent scatter spectral image reconstruction, which incorporates the attenuation map, at different stages, resulting in more accurate coherent scatter spectral images in comparison to their uncorrected counterpart. The algorithm is based on a spectrally grouped edge-preserving regularizer, where the neighborhood edge weights are determined by spatial distances and attenuation values.

  6. [Contribution of X-ray computed tomography in the evaluation of kidney performance].

    PubMed

    Lemoine, Sandrine; Rognant, Nicolas; Collet-Benzaquen, Diane; Juillard, Laurent

    2012-07-01

    X-ray computer assisted tomography scanner is an imaging method based on the use of X-ray attenuation in tissue. This attenuation is proportional to the density of the tissue (without or after contrast media injection) in each pixel image of the image. Spiral scanner, the electron beam computed tomography (EBCT) scanner and multidetector computed tomography scanner allow renal anatomical measurements, such as cortical and medullary volume, but also the measurement of renal functional parameters, such as regional renal perfusion, renal blood flow and glomerular filtration rate. These functional parameters are extracted from the modeling of the kinetics of the contrast media concentration in the vascular space and the renal tissue, using two main mathematical models (the gamma variate model and the Patlak model). Renal functional imaging allows measuring quantitative parameters on each kidney separately, in a non-invasive manner, providing significant opportunities in nephrology, both for experimental and clinical studies. However, this method uses contrast media that may alter renal function, thus limiting its use in patients with chronic renal failure. Moreover, the increase irradiation delivered to the patient with multi detector computed tomography (MDCT) should be considered. PMID:22019734

  7. Gauge Theories of Vector Particles

    DOE R&D Accomplishments Database

    Glashow, S. L.; Gell-Mann, M.

    1961-04-24

    The possibility of generalizing the Yang-Mills trick is examined. Thus we seek theories of vector bosons invariant under continuous groups of coordinate-dependent linear transformations. All such theories may be expressed as superpositions of certain "simple" theories; we show that each "simple theory is associated with a simple Lie algebra. We may introduce mass terms for the vector bosons at the price of destroying the gauge-invariance for coordinate-dependent gauge functions. The theories corresponding to three particular simple Lie algebras - those which admit precisely two commuting quantum numbers - are examined in some detail as examples. One of them might play a role in the physics of the strong interactions if there is an underlying super-symmetry, transcending charge independence, that is badly broken. The intermediate vector boson theory of weak interactions is discussed also. The so-called "schizon" model cannot be made to conform to the requirements of partial gauge-invariance.

  8. Extrapolation methods for vector sequences

    NASA Technical Reports Server (NTRS)

    Smith, David A.; Ford, William F.; Sidi, Avram

    1987-01-01

    This paper derives, describes, and compares five extrapolation methods for accelerating convergence of vector sequences or transforming divergent vector sequences to convergent ones. These methods are the scalar epsilon algorithm (SEA), vector epsilon algorithm (VEA), topological epsilon algorithm (TEA), minimal polynomial extrapolation (MPE), and reduced rank extrapolation (RRE). MPE and RRE are first derived and proven to give the exact solution for the right 'essential degree' k. Then, Brezinski's (1975) generalization of the Shanks-Schmidt transform is presented; the generalized form leads from systems of equations to TEA. The necessary connections are then made with SEA and VEA. The algorithms are extended to the nonlinear case by cycling, the error analysis for MPE and VEA is sketched, and the theoretical support for quadratic convergence is discussed. Strategies for practical implementation of the methods are considered.

  9. Solar tomography adaptive optics.

    PubMed

    Ren, Deqing; Zhu, Yongtian; Zhang, Xi; Dou, Jiangpei; Zhao, Gang

    2014-03-10

    Conventional solar adaptive optics uses one deformable mirror (DM) and one guide star for wave-front sensing, which seriously limits high-resolution imaging over a large field of view (FOV). Recent progress toward multiconjugate adaptive optics indicates that atmosphere turbulence induced wave-front distortion at different altitudes can be reconstructed by using multiple guide stars. To maximize the performance over a large FOV, we propose a solar tomography adaptive optics (TAO) system that uses tomographic wave-front information and uses one DM. We show that by fully taking advantage of the knowledge of three-dimensional wave-front distribution, a classical solar adaptive optics with one DM can provide an extra performance gain for high-resolution imaging over a large FOV in the near infrared. The TAO will allow existing one-deformable-mirror solar adaptive optics to deliver better performance over a large FOV for high-resolution magnetic field investigation, where solar activities occur in a two-dimensional field up to 60'', and where the near infrared is superior to the visible in terms of magnetic field sensitivity.

  10. Multiphoton tomography of astronauts

    NASA Astrophysics Data System (ADS)

    König, Karsten; Weinigel, Martin; Pietruszka, Anna; Bückle, Rainer; Gerlach, Nicole; Heinrich, Ulrike

    2015-03-01

    Weightlessness may impair the astronaut's health conditions. Skin impairments belong to the most frequent health problems during space missions. Within the Skin B project, skin physiological changes during long duration space flights are currently investigated on three European astronauts that work for nearly half a year at the ISS. Measurements on the hydration, the transepidermal water loss, the surface structure, elasticity and the tissue density by ultrasound are conducted. Furthermore, high-resolution in vivo histology is performed by multiphoton tomography with 300 nm spatial and 200 ps temporal resolution. The mobile certified medical tomograph with a flexible 360° scan head attached to a mechano-optical arm is employed to measure two-photon autofluorescence and SHG in the volar forearm of the astronauts. Modification of the tissue architecture and of the fluorescent biomolecules NAD(P)H, keratin, melanin and elastin are detected as well as of SHG-active collagen. Thinning of the vital epidermis, a decrease of the autofluoresence intensity, an increase in the long fluorescence lifetime, and a reduced skin ageing index SAAID based on an increased collagen level in the upper dermis have been found. Current studies focus on recovery effects.

  11. Interventional video tomography

    NASA Astrophysics Data System (ADS)

    Truppe, Michael J.; Pongracz, Ferenc; Ploder, Oliver; Wagner, Arne; Ewers, Rolf

    1995-05-01

    Interventional Video Tomography (IVT) is a new imaging modality for Image Directed Surgery to visualize in real-time intraoperatively the spatial position of surgical instruments relative to the patient's anatomy. The video imaging detector is based on a special camera equipped with an optical viewing and lighting system and electronic 3D sensors. When combined with an endoscope it is used for examining the inside of cavities or hollow organs of the body from many different angles. The surface topography of objects is reconstructed from a sequence of monocular video or endoscopic images. To increase accuracy and speed of the reconstruction the relative movement between objects and endoscope is continuously tracked by electronic sensors. The IVT image sequence represents a 4D data set in stereotactic space and contains image, surface topography and motion data. In ENT surgery an IVT image sequence of the planned and so far accessible surgical path is acquired prior to surgery. To simulate the surgical procedure the cross sectional imaging data is superimposed with the digitally stored IVT image sequence. During surgery the video sequence component of the IVT simulation is substituted by the live video source. The IVT technology makes obsolete the use of 3D digitizing probes for the patient image coordinate transformation. The image fusion of medical imaging data with live video sources is the first practical use of augmented reality in medicine. During surgery a head-up display is used to overlay real-time reformatted cross sectional imaging data with the live video image.

  12. [Optical coherence tomography].

    PubMed

    von Braunmühl, T

    2015-07-01

    Optical coherence tomography (OCT) was introduced in the 1990s in dermatology and is nowadays established as a noninvasive high-resolution technique for the in vivo evaluation of the skin. To date several studies have been successfully demonstrated the application of OCT for various dermatological questions. The main indication for OCT in the daily practice is the noninvasive diagnosis of nonmelanoma skin cancer such as actinic keratosis and basal cell carcinoma. OCT has also been shown to be a valuable tool in treatment monitoring and evaluation of therapeutic success of noninvasive treatment strategies like topical immune modulators or photodynamic treatment. Other potential applications for OCT include inflammatory diseases, microbial or parasitic infestations of the skin, e.g. scabies mites or onychomycosis. In recent years high-definition OCT devices have been developed that can potentially be used for the evaluation of melanocytic lesions and, due to the higher resolution, for the visualization of intrafollicular demodex mites. Furthermore different commercially available devices offer-in addition to the cross-sectional images-a fast-generated horizontal (en face) imaging mode. With respect to resolution and penetration depth the OCT technique is taking a middle position in comparison to other noninvasive imaging devices in dermatology such as sonography and reflectance confocal microscopy. PMID:25809459

  13. [Optical coherence tomography].

    PubMed

    von Braunmühl, T

    2015-07-01

    Optical coherence tomography (OCT) was introduced in the 1990s in dermatology and is nowadays established as a noninvasive high-resolution technique for the in vivo evaluation of the skin. To date several studies have been successfully demonstrated the application of OCT for various dermatological questions. The main indication for OCT in the daily practice is the noninvasive diagnosis of nonmelanoma skin cancer such as actinic keratosis and basal cell carcinoma. OCT has also been shown to be a valuable tool in treatment monitoring and evaluation of therapeutic success of noninvasive treatment strategies like topical immune modulators or photodynamic treatment. Other potential applications for OCT include inflammatory diseases, microbial or parasitic infestations of the skin, e.g. scabies mites or onychomycosis. In recent years high-definition OCT devices have been developed that can potentially be used for the evaluation of melanocytic lesions and, due to the higher resolution, for the visualization of intrafollicular demodex mites. Furthermore different commercially available devices offer-in addition to the cross-sectional images-a fast-generated horizontal (en face) imaging mode. With respect to resolution and penetration depth the OCT technique is taking a middle position in comparison to other noninvasive imaging devices in dermatology such as sonography and reflectance confocal microscopy.

  14. Cardiac Positron Emission Tomography

    PubMed Central

    Geltman, Edward M.

    1985-01-01

    Positron emission tomography (PET) is a new technique for noninvasively assessing myocardial metabolism and perfusion. It has provided new insight into the dynamics of myocardial fatty acid and glucose metabolism in normal subjects, patients with ischemic heart disease and those with cardiomyopathies, documenting regionally depressed fatty acid metabolism during myocardial ischemia and infarction and spatial heterogeneity of fatty acid metabolism in patients with cardiomyopathy. Regional myocardial perfusion has been studied with PET using water, ammonia and rubidium labeled with positron emitters, permitting the noninvasive detection of hypoperfused zones at rest and during vasodilator stress. With these techniques the relationship between perfusion and the metabolism of a variety of substrates has been studied. The great strides that have been made in developing faster high-resolution instruments and producing new labeled intermediates indicate the promise of this technique for facilitating an increase in the understanding of regional metabolism and blood flow under normal and pathophysiologic conditions. ImagesFigure 5.Figure 6.Figure 7.Figure 8.Figure 9. PMID:3879048

  15. Cardiovascular Optical Coherence Tomography

    NASA Astrophysics Data System (ADS)

    Yonetsu, Taishi; Villiger, Martin; Bouma, Brett E.; Jang, Ik-Kyung

    The potential of optical coherence tomography (OCT) for intravascular imaging and assessing the microstructure of atherosclerosis was suggested already by Huang et al. at the very beginning of OCT [1]. For ophthalmology, the eye provides a natural window for OCT to image the retinal microstructure, and OCT has rapidly become the standard imaging modality to diagnose retinal disease and assess disease progression and response to therapy [1, 2]. Intravascular imaging is more invasive by nature and requires imaging through a catheter probe. This has triggered the development of advanced fiber-optic OCT systems with compact, rotating fiber probes, to image the vessel by circumferentially scanning the luminal wall [3, 4]. In 1998, we established the first cardiac OCT research group at the Massachusetts General Hospital to explore the clinical applications of OCT. The first imaging of rabbit aorta was reported by Fujimoto et al. [5], followed by the first swine measurements in vivo by Tearney et al. [6], and finally the first assessment of coronary arteries in patients by Jang et al. [7]. The scope of this chapter is to highlight the steps taken to bring intravascular OCT from bench to bedside over the last 15 years. We will give a general description of atherosclerosis and its pathophysiology and the specific technical implementation of OCT for intravascular imaging through a fiber-optic probe. The motivation is to provide sufficient medical details to provide a basic introduction to the terminology, principles, and challenges of intracoronary imaging.

  16. Doppler Optical Coherence Tomography

    PubMed Central

    Leitgeb, Rainer A.; Werkmeister, René M.; Blatter, Cedric; Schmetterer, Leopold

    2014-01-01

    Optical Coherence Tomography (OCT) has revolutionized ophthalmology. Since its introduction in the early 1990s it has continuously improved in terms of speed, resolution and sensitivity. The technique has also seen a variety of extensions aiming to assess functional aspects of the tissue in addition to morphology. One of these approaches is Doppler OCT (DOCT), which aims to visualize and quantify blood flow. Such extensions were already implemented in time domain systems, but have gained importance with the introduction of Fourier domain OCT. Nowadays phase-sensitive detection techniques are most widely used to extract blood velocity and blood flow from tissues. A common problem with the technique is that the Doppler angle is not known and several approaches have been realized to obtain absolute velocity and flow data from the retina. Additional studies are required to elucidate which of these techniques is most promising. In the recent years, however, several groups have shown that data can be obtained with high validity and reproducibility. In addition, several groups have published values for total retinal blood flow. Another promising application relates to non-invasive angiography. As compared to standard techniques such as fluorescein and indocyanine-green angiography the technique offers two major advantages: no dye is required and depth resolution is required is provided. As such Doppler OCT has the potential to improve our abilities to diagnose and monitor ocular vascular diseases. PMID:24704352

  17. Computerized tomography calibrator

    NASA Technical Reports Server (NTRS)

    Engel, Herbert P. (Inventor)

    1991-01-01

    A set of interchangeable pieces comprising a computerized tomography calibrator, and a method of use thereof, permits focusing of a computerized tomographic (CT) system. The interchangeable pieces include a plurality of nestable, generally planar mother rings, adapted for the receipt of planar inserts of predetermined sizes, and of predetermined material densities. The inserts further define openings therein for receipt of plural sub-inserts. All pieces are of known sizes and densities, permitting the assembling of different configurations of materials of known sizes and combinations of densities, for calibration (i.e., focusing) of a computerized tomographic system through variation of operating variables thereof. Rather than serving as a phanton, which is intended to be representative of a particular workpiece to be tested, the set of interchangeable pieces permits simple and easy standardized calibration of a CT system. The calibrator and its related method of use further includes use of air or of particular fluids for filling various openings, as part of a selected configuration of the set of pieces.

  18. Endoscopic Optical Coherence Tomography

    NASA Astrophysics Data System (ADS)

    Zhou, Chao; Fujimoto, James G.; Tsai, Tsung-Han; Mashimo, Hiroshi

    New gastrointestinal (GI) cancers are expected to affect more than 290,200 new patients and will cause more than 144,570 deaths in the United States in 2013 [1]. When detected and treated early, the 5-year survival rate for colorectal cancer increases by a factor of 1.4 [1]. For esophageal cancer, the rate increases by a factor of 2 [1]. The majority of GI cancers begin as small lesions that are difficult to identify with conventional endoscopy. With resolutions approaching that of histopathology, optical coherence tomography (OCT) is well suited for detecting the changes in tissue microstructure associated with early GI cancers. Since the lesions are not endoscopically apparent, however, it is necessary to survey a relatively large area of the GI tract. Tissue motion is another limiting factor in the GI tract; therefore, in vivo imaging must be performed at extremely high speeds. OCT imaging can be performed using fiber optics and miniaturized lens systems, enabling endoscopic OCT inside the human body in conjunction with conventional video endoscopy. An OCT probe can be inserted through the working channel of a standard endoscope, thus enabling depth-resolved imaging of tissue microstructure in the GI tract with micron-scale resolution simultaneously with the endoscopic view (Fig. 68.1).

  19. Doppler optical coherence tomography.

    PubMed

    Leitgeb, Rainer A; Werkmeister, René M; Blatter, Cedric; Schmetterer, Leopold

    2014-07-01

    Optical Coherence Tomography (OCT) has revolutionized ophthalmology. Since its introduction in the early 1990s it has continuously improved in terms of speed, resolution and sensitivity. The technique has also seen a variety of extensions aiming to assess functional aspects of the tissue in addition to morphology. One of these approaches is Doppler OCT (DOCT), which aims to visualize and quantify blood flow. Such extensions were already implemented in time domain systems, but have gained importance with the introduction of Fourier domain OCT. Nowadays phase-sensitive detection techniques are most widely used to extract blood velocity and blood flow from tissues. A common problem with the technique is that the Doppler angle is not known and several approaches have been realized to obtain absolute velocity and flow data from the retina. Additional studies are required to elucidate which of these techniques is most promising. In the recent years, however, several groups have shown that data can be obtained with high validity and reproducibility. In addition, several groups have published values for total retinal blood flow. Another promising application relates to non-invasive angiography. As compared to standard techniques such as fluorescein and indocyanine-green angiography the technique offers two major advantages: no dye is required and depth resolution is required is provided. As such Doppler OCT has the potential to improve our abilities to diagnose and monitor ocular vascular diseases. PMID:24704352

  20. Polychromatic sparse image reconstruction and mass attenuation spectrum estimation via B-spline basis function expansion

    NASA Astrophysics Data System (ADS)

    Gu, Renliang; Dogandžić, Aleksandar

    2015-03-01

    We develop a sparse image reconstruction method for polychromatic computed tomography (CT) measurements under the blind scenario where the material of the inspected object and the incident energy spectrum are unknown. To obtain a parsimonious measurement model parameterization, we first rewrite the measurement equation using our mass-attenuation parameterization, which has the Laplace integral form. The unknown mass-attenuation spectrum is expanded into basis functions using a B-spline basis of order one. We develop a block coordinate-descent algorithm for constrained minimization of a penalized negative log-likelihood function, where constraints and penalty terms ensure nonnegativity of the spline coefficients and sparsity of the density map image in the wavelet domain. This algorithm alternates between a Nesterov's proximal-gradient step for estimating the density map image and an active-set step for estimating the incident spectrum parameters. Numerical simulations demonstrate the performance of the proposed scheme.

  1. Polychromatic sparse image reconstruction and mass attenuation spectrum estimation via B-spline basis function expansion

    SciTech Connect

    Gu, Renliang E-mail: ald@iastate.edu; Dogandžić, Aleksandar E-mail: ald@iastate.edu

    2015-03-31

    We develop a sparse image reconstruction method for polychromatic computed tomography (CT) measurements under the blind scenario where the material of the inspected object and the incident energy spectrum are unknown. To obtain a parsimonious measurement model parameterization, we first rewrite the measurement equation using our mass-attenuation parameterization, which has the Laplace integral form. The unknown mass-attenuation spectrum is expanded into basis functions using a B-spline basis of order one. We develop a block coordinate-descent algorithm for constrained minimization of a penalized negative log-likelihood function, where constraints and penalty terms ensure nonnegativity of the spline coefficients and sparsity of the density map image in the wavelet domain. This algorithm alternates between a Nesterov’s proximal-gradient step for estimating the density map image and an active-set step for estimating the incident spectrum parameters. Numerical simulations demonstrate the performance of the proposed scheme.

  2. Reconstruction from Uniformly Attenuated SPECT Projection Data Using the DBH Method

    SciTech Connect

    Huang, Qiu; You, Jiangsheng; Zeng, Gengsheng L.; Gullberg, Grant T.

    2008-03-20

    An algorithm was developed for the two-dimensional (2D) reconstruction of truncated and non-truncated uniformly attenuated data acquired from single photon emission computed tomography (SPECT). The algorithm is able to reconstruct data from half-scan (180o) and short-scan (180?+fan angle) acquisitions for parallel- and fan-beam geometries, respectively, as well as data from full-scan (360o) acquisitions. The algorithm is a derivative, backprojection, and Hilbert transform (DBH) method, which involves the backprojection of differentiated projection data followed by an inversion of the finite weighted Hilbert transform. The kernel of the inverse weighted Hilbert transform is solved numerically using matrix inversion. Numerical simulations confirm that the DBH method provides accurate reconstructions from half-scan and short-scan data, even when there is truncation. However, as the attenuation increases, finer data sampling is required.

  3. Helper-Dependent Adenoviral Vectors

    PubMed Central

    Rosewell, Amanda; Vetrini, Francesco; Ng, Philip

    2012-01-01

    Helper-dependent adenoviral vectors are devoid of all viral coding sequences, possess a large cloning capacity, and can efficiently transduce a wide variety of cell types from various species independent of the cell cycle to mediate long-term transgene expression without chronic toxicity. These non-integrating vectors hold tremendous potential for a variety of gene transfer and gene therapy applications. Here, we review the production technologies, applications, obstacles to clinical translation and their potential resolutions, and the future challenges and unanswered questions regarding this promising gene transfer technology. PMID:24533227

  4. Requirements for airborne vector gravimetry

    NASA Technical Reports Server (NTRS)

    Schwarz, K. P.; Colombo, O.; Hein, G.; Knickmeyer, E. T.

    1992-01-01

    The objective of airborne vector gravimetry is the determination of the full gravity disturbance vector along the aircraft trajectory. The paper briefly outlines the concept of this method using a combination of inertial and GPS-satellite data. The accuracy requirements for users in geodesy and solid earth geophysics, oceanography and exploration geophysics are then specified. Using these requirements, accuracy specifications for the GPS subsystem and the INS subsystem are developed. The integration of the subsystems and the problems connected with it are briefly discussed and operational methods are indicated that might reduce some of the stringent accuracy requirements.

  5. Anisotropic inflation from vector impurity

    SciTech Connect

    Kanno, Sugumi; Kimura, Masashi; Soda, Jiro; Yokoyama, Shuichiro E-mail: mkimura@sci.osaka-cu.ac.jp E-mail: shu@a.phys.nagoya-u.ac.jp

    2008-08-15

    We study an inflationary scenario with a vector impurity. We show that the universe undergoes anisotropic inflationary expansion due to a preferred direction determined by the vector. Using the slow roll approximation, we find a formula for determining the anisotropy of the inflationary universe. We discuss possible observable predictions of this scenario. In particular, it is stressed that primordial gravitational waves can be induced from curvature perturbations. Hence, even in low scale inflation, a sizable amount of primordial gravitational waves may be produced during inflation.

  6. Complexity of vector spin glasses.

    PubMed

    Yeo, J; Moore, M A

    2004-08-13

    We study the annealed complexity of the m-vector spin glasses in the Sherrington-Kirkpatrick limit. The eigenvalue spectrum of the Hessian matrix of the Thouless-Anderson-Palmer free energy is found to consist of a continuous band of positive eigenvalues in addition to an isolated eigenvalue and (m-1) null eigenvalues due to rotational invariance. Rather surprisingly, the band does not extend to zero at any finite temperature. The isolated eigenvalue becomes zero in the thermodynamic limit, as in the Ising case (m=1), indicating that the same supersymmetry breaking recently found in Ising spin glasses occurs in vector spin glasses.

  7. Evaluation of dental enamel caries assessment using Quantitative Light Induced Fluorescence and Optical Coherence Tomography.

    PubMed

    Maia, Ana Marly Araújo; de Freitas, Anderson Zanardi; de L Campello, Sergio; Gomes, Anderson Stevens Leônidas; Karlsson, Lena

    2016-06-01

    An in vitro study of morphological alterations between sound dental structure and artificially induced white spot lesions in human teeth, was performed through the loss of fluorescence by Quantitative Light-Induced Fluorescence (QLF) and the alterations of the light attenuation coefficient by Optical Coherence Tomography (OCT). To analyze the OCT images using a commercially available system, a special algorithm was applied, whereas the QLF images were analyzed using the software available in the commercial system employed. When analyzing the sound region against white spot lesions region by QLF, a reduction in the fluorescence intensity was observed, whilst an increase of light attenuation by the OCT system occurred. Comparison of the percentage of alteration between optical properties of sound and artificial enamel caries regions showed that OCT processed images through the attenuation of light enhanced the tooth optical alterations more than fluorescence detected by QLF System. QLF versus OCT imaging of enamel caries: a photonics assessment.

  8. Computed tomography for the diagnosis and treatment monitoring of bacterial pneumonia in Indian pythons (Python molurus).

    PubMed

    Pees, M; Kiefer, I; Oechtering, G; Krautwald-Junghanns, M-E

    2008-08-01

    Eight Indian pythons (Python molurus) with clinical and microbiological evidence of pneumonia were examined by computed tomography (ct) before and after treatment. The results were assessed subjectively and measurements were taken following a standard protocol. Changes in the lung tissue of all the pythons were diagnosed, and the extent of the disease could be assessed. ct examinations after treatment showed an improvement in the six pythons whose clinical condition had improved, but in the other two pythons they demonstrated the severity of the disease. The subjective assessments were superior to the evaluation of measurements of attenuation in regions of interest. However, the average and the maximum attenuation provided additional information on the extent of the disease. Except for one python with only mild clinical signs, the attenuation after successful treatment was still higher than in healthy pythons.

  9. Microcracking in Composite Laminates: Simulation of Crack-Induced Ultrasound Attenuation

    NASA Technical Reports Server (NTRS)

    Leckey, C. A. C.; Rogge, M. D.; Parker, F. R.

    2012-01-01

    Microcracking in composite laminates is a known precursor to the growth of inter-ply delaminations and larger scale damage. Microcracking can lead to the attenuation of ultrasonic waves due to the crack-induced scattering. 3D elastodynamic finite integration technique (EFIT) has been implemented to explore the scattering of ultrasonic waves due to microcracks in anisotropic composite laminates. X-ray microfocus computed tomography data was directly input into the EFIT simulation for these purposes. The validated anisotropic 3D EFIT code is shown to be a useful tool for exploring the complex multiple-scattering which arises from extensive microcracking.

  10. An empirical model of diagnostic x-ray attenuation under narrow-beam geometry

    SciTech Connect

    Mathieu, Kelsey B.; Kappadath, S. Cheenu; White, R. Allen; Atkinson, E. Neely; Cody, Dianna D.

    2011-08-15

    Purpose: The purpose of this study was to develop and validate a mathematical model to describe narrow-beam attenuation of kilovoltage x-ray beams for the intended applications of half-value layer (HVL) and quarter-value layer (QVL) estimations, patient organ shielding, and computer modeling. Methods: An empirical model, which uses the Lambert W function and represents a generalized Lambert-Beer law, was developed. To validate this model, transmission of diagnostic energy x-ray beams was measured over a wide range of attenuator thicknesses [0.49-33.03 mm Al on a computed tomography (CT) scanner, 0.09-1.93 mm Al on two mammography systems, and 0.1-0.45 mm Cu and 0.49-14.87 mm Al using general radiography]. Exposure measurements were acquired under narrow-beam geometry using standard methods, including the appropriate ionization chamber, for each radiographic system. Nonlinear regression was used to find the best-fit curve of the proposed Lambert W model to each measured transmission versus attenuator thickness data set. In addition to validating the Lambert W model, we also assessed the performance of two-point Lambert W interpolation compared to traditional methods for estimating the HVL and QVL [i.e., semilogarithmic (exponential) and linear interpolation]. Results: The Lambert W model was validated for modeling attenuation versus attenuator thickness with respect to the data collected in this study (R{sup 2} > 0.99). Furthermore, Lambert W interpolation was more accurate and less sensitive to the choice of interpolation points used to estimate the HVL and/or QVL than the traditional methods of semilogarithmic and linear interpolation. Conclusions: The proposed Lambert W model accurately describes attenuation of both monoenergetic radiation and (kilovoltage) polyenergetic beams (under narrow-beam geometry).

  11. Dependence of light attenuation and backscattering on collagen concentration and chondrocyte density in agarose scaffolds

    NASA Astrophysics Data System (ADS)

    Puhakka, P. H.; Ylärinne, J. H.; Lammi, M. J.; Saarakkala, S.; Tiitu, V.; Kröger, H.; Virén, T.; Jurvelin, J. S.; Töyräs, J.

    2014-11-01

    Optical coherence tomography (OCT) has been applied for high resolution imaging of articular cartilage. However, the contribution of individual structural elements of cartilage on OCT signal has not been thoroughly studied. We hypothesize that both collagen and chondrocytes, essential structural components of cartilage, act as important light scatterers and that variation in their concentrations can be detected by OCT through changes in backscattering and attenuation. To evaluate this hypothesis, we established a controlled model system using agarose scaffolds embedded with variable collagen concentrations and chondrocyte densities. Using OCT, we measured the backscattering coefficient (µb) and total attenuation coefficient (µt) in these scaffolds. Along our hypothesis, light backscattering and attenuation in agarose were dependent on collagen concentration and chondrocyte density. Significant correlations were found between µt and chondrocyte density (ρ = 0.853, p < 0.001) and between µt and collagen concentration (ρ = 0.694, p < 0.001). µb correlated significantly with chondrocyte density (ρ = 0.504, p < 0.001) but not with collagen concentration (ρ = 0.103, p = 0.422) of the scaffold. Thus, quantitation of light backscattering and, especially, attenuation could be valuable when evaluating the integrity of soft tissues, such as articular cartilage with OCT.

  12. Dependence of light attenuation and backscattering on collagen concentration and chondrocyte density in agarose scaffolds.

    PubMed

    Puhakka, P H; Ylärinne, J H; Lammi, M J; Saarakkala, S; Tiitu, V; Kröger, H; Virén, T; Jurvelin, J S; Töyräs, J

    2014-11-01

    Optical coherence tomography (OCT) has been applied for high resolution imaging of articular cartilage. However, the contribution of individual structural elements of cartilage on OCT signal has not been thoroughly studied. We hypothesize that both collagen and chondrocytes, essential structural components of cartilage, act as important light scatterers and that variation in their concentrations can be detected by OCT through changes in backscattering and attenuation. To evaluate this hypothesis, we established a controlled model system using agarose scaffolds embedded with variable collagen concentrations and chondrocyte densities. Using OCT, we measured the backscattering coefficient (µb) and total attenuation coefficient (µt) in these scaffolds. Along our hypothesis, light backscattering and attenuation in agarose were dependent on collagen concentration and chondrocyte density. Significant correlations were found between µt and chondrocyte density (ρ = 0.853, p < 0.001) and between µt and collagen concentration (ρ = 0.694, p < 0.001). µb correlated significantly with chondrocyte density (ρ = 0.504, p < 0.001) but not with collagen concentration (ρ = 0.103, p = 0.422) of the scaffold. Thus, quantitation of light backscattering and, especially, attenuation could be valuable when evaluating the integrity of soft tissues, such as articular cartilage with OCT. PMID:25310088

  13. Improved attenuation correction for freely moving animal brain PET studies using a virtual scanner geometry

    NASA Astrophysics Data System (ADS)

    Angelis, Georgios I.; Ryder, William J.; Kyme, Andre Z.; Fulton, Roger R.; Meikle, Steven R.

    2014-03-01

    Attenuation correction in positron emission tomography brain imaging of freely moving animals can be very challenging since the body of the animal is often within the field of view and introduces a non negligible atten- uating factor that can degrade the quantitative accuracy of the reconstructed images. An attractive approach that avoids the need for a transmission scan involves the generation of the convex hull of the animal's head based on the reconstructed emission images. However, this approach ignores the potential attenuation introduced by the animal's body. In this work, we propose a virtual scanner geometry, which moves in synchrony with the animal's head and discriminates between those events that traverse only the animal's head (and therefore can be accurately compensated for attenuation) and those that might have also traversed the animal's body. For each pose a new virtual scanner geometry was defined and therefore a new system matrix was calculated leading to a time-varying system matrix. This new approach was evaluated on phantom data acquired on the microPET Focus 220 scanner using a custom-made rat phantom. Results showed that when the animal's body is within the FOV and not accounted for during attenuation correction it can lead to bias of up to 10%. On the contrary, at- tenuation correction was more accurate when the virtual scanner was employed leading to improved quantitative estimates (bias <2%), without the need to account for the animal's body.

  14. In Vitro Validation of an Artefact Suppression Algorithm in X-Ray Phase-Contrast Computed Tomography

    PubMed Central

    Sunaguchi, Naoki; Yuasa, Tetsuya; Hirano, Shin-ichi; Gupta, Rajiv; Ando, Masami

    2015-01-01

    X-ray phase-contrast tomography can significantly increase the contrast-resolution of conventional attenuation-contrast imaging, especially for soft-tissue structures that have very similar attenuation. Just as in attenuation-based tomography, phase contrast tomography requires a linear dependence of aggregate beam direction on the incremental direction alteration caused by individual voxels along the path of the X-ray beam. Dense objects such as calcifications in biological specimens violate this condition. There are extensive beam deflection artefacts in the vicinity of such structures because they result in large distortion of wave front due to the large difference of refractive index; for such large changes in beam direction, the transmittance of the silicon analyzer crystal saturates and is no longer linearly dependent on the angle of refraction. This paper describes a method by which these effects can be overcome and excellent soft-tissue contrast of phase tomography can be preserved in the vicinity of such artefact-producing structures. PMID:26295713

  15. In Vitro Validation of an Artefact Suppression Algorithm in X-Ray Phase-Contrast Computed Tomography.

    PubMed

    Sunaguchi, Naoki; Yuasa, Tetsuya; Hirano, Shin-Ichi; Gupta, Rajiv; Ando, Masami

    2015-01-01

    X-ray phase-contrast tomography can significantly increase the contrast-resolution of conventional attenuation-contrast imaging, especially for soft-tissue structures that have very similar attenuation. Just as in attenuation-based tomography, phase contrast tomography requires a linear dependence of aggregate beam direction on the incremental direction alteration caused by individual voxels along the path of the X-ray beam. Dense objects such as calcifications in biological specimens violate this condition. There are extensive beam deflection artefacts in the vicinity of such structures because they result in large distortion of wave front due to the large difference of refractive index; for such large changes in beam direction, the transmittance of the silicon analyzer crystal saturates and is no longer linearly dependent on the angle of refraction. This paper describes a method by which these effects can be overcome and excellent soft-tissue contrast of phase tomography can be preserved in the vicinity of such artefact-producing structures. PMID:26295713

  16. Live attenuated intranasal influenza vaccine.

    PubMed

    Esposito, Susanna; Montinaro, Valentina; Groppali, Elena; Tenconi, Rossana; Semino, Margherita; Principi, Nicola

    2012-01-01

    Annual vaccination is the most effective means of preventing and controlling influenza epidemics, and the traditional trivalent inactivated vaccine (TIV) is by far the most widely used. Unfortunately, it has a number of limitations, the most important of which is its poor immunogenicity in younger children and the elderly, the populations at greatest risk of severe influenza. Live attenuated influenza vaccine (LAIV) has characteristics that can overcome some of these limitations. It does not have to be injected because it is administered intranasally. It is very effective in children and adolescents, among whom it prevents significantly more cases of influenza than the traditional TIV. However, its efficacy in adults has not been adequately documented, which is why it has not been licensed for use by adults by the European health authorities. LAIV is safe and well tolerated by children aged > 2 y and adults, but some concerns arisen regarding its safety in younger children and subjects with previous asthma or with recurrent wheezing. Further studies are needed to solve these problems and to evaluate the possible role of LAIV in the annual vaccination of the general population.

  17. Attenuation of diacylglycerol second messengers

    SciTech Connect

    Bishop, W.R.; Ganong, B.R.; Bell, R.M.

    1986-05-01

    Diacylglycerol(DAG) derived from phosphatidylinositol activates protein kinase C in agonist-stimulated cells. At least two pathways may contribute to the attenuation of the DAG signal: (1) phosphorylation to phosphatidic acid(PA) by DAG kinase(DGK), and (2) deacylation by DAG and monoacylglycerol lipases. A number of DAG analogs were tested as substrates and inhibitors of partially purified pig brain DGK. Two analogs were potent inhibitors in vitro, 1-monooleoylglycerol(MOG,K/sub I/ = 91 ..mu..M) and diotanoylethyleneglycol (diC/sub 8/EG, K/sub I/ = 58 ..mu..M). These compounds were tested in human platelets. DiC/sub 8/EG inhibited (70 - 100%) (/sup 32/P/sub i/) incorporation into PA in thrombin-stimulated platelets. Under these conditions the DAG signal was somewhat long-lived but was still metabolized, presumably by the lipase pathway. MOG treatment elevated DAG levels up to 4-fold in unstimulated platelets. The DAG formed was in a pool where it did not activate protein kinase C. Thrombin-stimulation of MOG-treated platelets resulted in DAG levels 10-fold higher than control platelets. This appears to be due to the inability of these platelets to metabolize agonist-linked DAG via the lipase pathway. The development of specific inhibitors of DAG kinase and DAG lipase, in conjunction with mass quantification of DAG levels as used here, will provide further insights into the regulation of DAG second messengers.

  18. Transdimensional Seismic Tomography

    NASA Astrophysics Data System (ADS)

    Bodin, T.; Sambridge, M.

    2009-12-01

    In seismic imaging the degree of model complexity is usually determined by manually tuning damping parameters within a fixed parameterization chosen in advance. Here we present an alternative methodology for seismic travel time tomography where the model complexity is controlled automatically by the data. In particular we use a variable parametrization consisting of Voronoi cells with mobile geometry, shape and number, all treated as unknowns in the inversion. The reversible jump algorithm is used to sample the transdimensional model space within a Bayesian framework which avoids global damping procedures and the need to tune regularisation parameters. The method is an ensemble inference approach, as many potential solutions are generated with variable numbers of cells. Information is extracted from the ensemble as a whole by performing Monte Carlo integration to produce the expected Earth model. The ensemble of models can also be used to produce velocity uncertainty estimates and experiments with synthetic data suggest they represent actual uncertainty surprisingly well. In a transdimensional approach, the level of data uncertainty directly determines the model complexity needed to satisfy the data. Intriguingly, the Bayesian formulation can be extended to the case where data uncertainty is also uncertain. Experiments show that it is possible to recover data noise estimate while at the same time controlling model complexity in an automated fashion. The method is tested on synthetic data in a 2-D application and compared with a more standard matrix based inversion scheme. The method has also been applied to real data obtained from cross correlation of ambient noise where little is known about the size of the errors associated with the travel times. As an example, a tomographic image of Rayleigh wave group velocity for the Australian continent is constructed for 5s data together with uncertainty estimates.

  19. Micromagnetic Tomography in Practice

    NASA Astrophysics Data System (ADS)

    Béguin, A.; de Groot, L. V.; Fabian, K.; Reith, P.; Rastogi, A.; Barnhoorn, A.; Hilgenkamp, H.

    2015-12-01

    Methods to derive paleodirections or paleointensities from rocks currently rely on measurements of bulk samples (typically ~10 cc). The process of recording and storing magnetizations as function of temperature, however, differs for grains of various sizes and chemical compositions. Most rocks, by their mere nature, consist of assemblages of grains varying in size, shape, and chemistry. When dealing with lavas, this differing magnetic behavior often hampers paleointensity experiments; while occasionally a reliable paleodirection is obscured (e.g. Coe et al. (2014)). If we would be able to isolate the contribution of each magnetic grain in a sample to the bulk magnetic moment of that sample, a wealth of opportunities for highly detailed magnetic analysis would be opened, possibly leading to an entirely new approach in retrieving paleomagnetic signals from complex mineralogies. Here we take the first practical steps towards this goal by developing a new technique: 'micromagnetic tomography'. Firstly, the distribution and volume of the remanence carrying grains in the sample must be assessed; this is done using a MicroCT scanner capable of detecting grains >1 micron. Secondly, the magnetic stray field perpendicular to the surface of a thin sample is measured using a high-resolution DC SQUID microscope. A mathematical inversion of these measurements yields the isolated direction and magnitude of the magnetic moment of individual grains in the sample. As the measured strength of the magnetic field decreases with the third power as function of distance to the exerting grain (as a result of decay in three dimensions), grains in the top 10-20 microns of the sample can be assessed reliably.

  20. Immunogenicity of transmissible gastroenteritis virus (TGEV) M gene delivered by attenuated Salmonella typhimurium in mice.

    PubMed

    Qing, Ying; Liu, Jiawen; Huang, Xiaobo; Li, Yaqing; Zhang, Yudi; Chen, Jie; Wen, Xintian; Cao, Sanjie; Wen, Yiping; Wu, Rui; Yan, Qigui; Ma, Xiaoping

    2016-04-01

    Attenuated Salmonella typhimurium (S. typhimurium) was selected as a transgenic vehicle for the development of live mucosal vaccines against transmissible gastroenteritis virus (TGEV) based on the M gene. An approximate 1.0 kb DNA fragment, encoding for glycoprotein M, was amplified by RT-PCR and cloned into eukaryotic expression vector pVAX1. The recombinant plasmid pVAX-M was transformed by electroporation into attenuated S. typhimurium SL7207, and the expression and translation of the pVAX-M delivered by recombinant S. typhimurium SL7207 (pVAX-M) was detected both in vitro and in vivo. BALB/c mice were inoculated orally with SL7207 (pVAX-M) at different dosages to evaluate safety of the vaccines. The bacterium was safe to mice at a dosage of 2 × 10(9) CFU, almost eliminated from the spleen and liver at week 4 post-immunization and eventually cleared at week 6. Mice immunized with 1 × 10(9) CFU of SL7207 (pVAX-M) elicited specific anti-TGEV local mucosal and humoral responses including levels of IgA, IgG, IL-4, and IFN-γ as measured by indirect ELISA assay. Moreover, the control groups (pVAX group, PBS group) maintained at a normal level during week 4-8 post-immunization. The results indicated that attenuated S. typhimurium could be used as a delivery vector for oral immunization of TGEV M gene vaccine. PMID:26837896

  1. Primer vector theory and applications

    NASA Technical Reports Server (NTRS)

    Jezewski, D. J.

    1975-01-01

    A method developed to compute two-body, optimal, N-impulse trajectories was presented. The necessary conditions established define the gradient structure of the primer vector and its derivative for any set of boundary conditions and any number of impulses. Inequality constraints, a conjugate gradient iterator technique, and the use of a penalty function were also discussed.

  2. Interframe vector wavelet coding technique

    NASA Astrophysics Data System (ADS)

    Wus, John P.; Li, Weiping

    1997-01-01

    Wavelet coding is often used to divide an image into multi- resolution wavelet coefficients which are quantized and coded. By 'vectorizing' scalar wavelet coding and combining this with vector quantization (VQ), vector wavelet coding (VWC) can be implemented. Using a finite number of states, finite-state vector quantization (FSVQ) takes advantage of the similarity between frames by incorporating memory into the video coding system. Lattice VQ eliminates the potential mismatch that could occur using pre-trained VQ codebooks. It also eliminates the need for codebook storage in the VQ process, thereby creating a more robust coding system. Therefore, by using the VWC coding method in conjunction with the FSVQ system and lattice VQ, the formulation of a high quality very low bit rate coding systems is proposed. A coding system using a simple FSVQ system where the current state is determined by the previous channel symbol only is developed. To achieve a higher degree of compression, a tree-like FSVQ system is implemented. The groupings are done in this tree-like structure from the lower subbands to the higher subbands in order to exploit the nature of subband analysis in terms of the parent-child relationship. Class A and Class B video sequences from the MPEG-IV testing evaluations are used in the evaluation of this coding method.

  3. [Vector control, perspectives and realities].

    PubMed

    Carnevale, P

    1995-01-01

    In the WHO Global Strategy for Malaria Control, selective and sustainable vector control is one of the measures to be implemented to complement case management and for the control of epidemics. Vector control can be targeted against larvae and adults, but two elements must be recognized: -vector control measures must be selected according to the existing eco-epidemiological diversity, which has to be well understood before embarking upon any extensive action; -efficient tools are currently available, both for large scale and household use. House spraying is still the method of choice for epidemic control but must be carefully considered and used selectively in endemic countries for various well known reasons. The promotion of personal protection measures for malaria prevention is advocated because insecticide-impregnated mosquito nets and other materials have proved to be effective in different situations. Implementation, sustainability and large scale use of impregnated nets implies a strong community participation supported by well motivated community health workers, the availability of suitable materials (insecticide, mosquito nets), intersectorial collaboration at all levels, well trained health workers from central to the most peripheral level and appropriate educational messages (Knowledge, Attitude and Practices) adapted and elaborated after surveys. It has to be kept in mind that the evaluation of the impact of vector control activities will be made in epidemiological terms such as the reduction of malaria morbidity and mortality.

  4. Hydrogen as an energy vector

    NASA Technical Reports Server (NTRS)

    Powers, W. D.

    1975-01-01

    The feasibility of utilizing hydrogen as an energy vector is considered, with special attention given to means of hydrogen production. The state-of-the-art in thermochemical processes is reviewed, and criteria for the technical and economic feasibility of large-scale thermochemical water splitting processes are presented. The production of hydrogen from coal and from photolysis of water is discussed.

  5. Transcriptomics and disease vector control.

    PubMed

    Vontas, John; Ranson, Hilary; Alphey, Luke

    2010-01-01

    Next-generation sequencing can be used to compare transcriptomes under different conditions. A study in BMC Genomics applies this approach to investigating the effects of exposure to a range of xenobiotics on changes in gene expression in the larvae of Aedes aegypti, the mosquito vector of dengue fever.

  6. Vector ecology of equine piroplasmosis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Equine piroplasmosis (EP) is a disease of equidae including horses, donkeys, mules and zebras caused by either of two protozoan parasites, Theileria equi or Babesia caballi. These parasites are biologically transmitted between hosts via tick-vectors and although they have inherent differences, they ...

  7. Portfolio Analysis for Vector Calculus

    ERIC Educational Resources Information Center

    Kaplan, Samuel R.

    2015-01-01

    Classic stock portfolio analysis provides an applied context for Lagrange multipliers that undergraduate students appreciate. Although modern methods of portfolio analysis are beyond the scope of vector calculus, classic methods reinforce the utility of this material. This paper discusses how to introduce classic stock portfolio analysis in a…

  8. MicroRNA-regulated viral vectors for gene therapy.

    PubMed

    Geisler, Anja; Fechner, Henry

    2016-05-20

    Safe and effective gene therapy approaches require targeted tissue-specific transfer of a therapeutic transgene. Besides traditional approaches, such as transcriptional and transductional targeting, microRNA-dependent post-transcriptional suppression of transgene expression has been emerging as powerful new technology to increase the specificity of vector-mediated transgene expression. MicroRNAs are small non-coding RNAs and often expressed in a tissue-, lineage-, activation- or differentiation-specific pattern. They typically regulate gene expression by binding to imperfectly complementary sequences in the 3' untranslated region (UTR) of the mRNA. To control exogenous transgene expression, tandem repeats of artificial microRNA target sites are usually incorporated into the 3' UTR of the transgene expression cassette, leading to subsequent degradation of transgene mRNA in cells expressing the corresponding microRNA. This targeting strategy, first shown for lentiviral vectors in antigen presenting cells, has now been used for tissue-specific expression of vector-encoded therapeutic transgenes, to reduce immune response against the transgene, to control virus tropism for oncolytic virotherapy, to increase safety of live attenuated virus vaccines and to identify and select cell subsets for pluripotent stem cell therapies, respectively. This review provides an introduction into the technical mechanism underlying microRNA-regulation, highlights new developments in this field and gives an overview of applications of microRNA-regulated viral vectors for cardiac, suicide gene cancer and hematopoietic stem cell therapy, as well as for treatment of neurological and eye diseases. PMID:27226955

  9. MicroRNA-regulated viral vectors for gene therapy

    PubMed Central

    Geisler, Anja; Fechner, Henry

    2016-01-01

    Safe and effective gene therapy approaches require targeted tissue-specific transfer of a therapeutic transgene. Besides traditional approaches, such as transcriptional and transductional targeting, microRNA-dependent post-transcriptional suppression of transgene expression has been emerging as powerful new technology to increase the specificity of vector-mediated transgene expression. MicroRNAs are small non-coding RNAs and often expressed in a tissue-, lineage-, activation- or differentiation-specific pattern. They typically regulate gene expression by binding to imperfectly complementary sequences in the 3’ untranslated region (UTR) of the mRNA. To control exogenous transgene expression, tandem repeats of artificial microRNA target sites are usually incorporated into the 3’ UTR of the transgene expression cassette, leading to subsequent degradation of transgene mRNA in cells expressing the corresponding microRNA. This targeting strategy, first shown for lentiviral vectors in antigen presenting cells, has now been used for tissue-specific expression of vector-encoded therapeutic transgenes, to reduce immune response against the transgene, to control virus tropism for oncolytic virotherapy, to increase safety of live attenuated virus vaccines and to identify and select cell subsets for pluripotent stem cell therapies, respectively. This review provides an introduction into the technical mechanism underlying microRNA-regulation, highlights new developments in this field and gives an overview of applications of microRNA-regulated viral vectors for cardiac, suicide gene cancer and hematopoietic stem cell therapy, as well as for treatment of neurological and eye diseases. PMID:27226955

  10. Computed tomography of ball pythons (Python regius) in curled recumbency.

    PubMed

    Hedley, Joanna; Eatwell, Kevin; Schwarz, Tobias

    2014-01-01

    Anesthesia and tube restraint methods are often required for computed tomography (CT) of snakes due to their natural tendency to curl up. However, these restraint methods may cause animal stress. The aim of this study was to determine whether the CT appearance of the lungs differs for ball pythons in a curled position vs. tube restraint. Whole body CT was performed on ten clinically healthy ball pythons, first in curled and then in straight positions restrained in a tube. Curved multiplanar reformatted (MPR) lung images from curled position scans were compared with standard MPR lung images from straight position scans. Lung attenuation and thickness were measured at three locations for each scan. Time for positioning and scanning was 12 ± 5 min shorter for curled snakes compared to tube restraint. Lung parenchyma thickness and attenuation declined from cranial to caudal on both straight and curled position images. Mean lung parenchyma thickness was greater in curled images at locations 1 (P = 0.048) and 3 (P = 0.044). Mean lung parenchyma thickness decreased between location 1 and 2 by 86-87% (straight: curled) and between location 1 and 3 by 51-50% (straight: curled). Mean lung attenuation at location 1 was significantly greater on curled position images than tube restraint images (P = 0.043). Findings indicated that CT evaluation of the lungs is feasible for ball pythons positioned in curled recumbency if curved MPR is available. However, lung parenchyma thickness and attenuation in some locations may vary from those acquired using tube restraint.

  11. Attenuation correction without transmission scan for the MAMMI breast PET

    NASA Astrophysics Data System (ADS)

    Soriano, A.; González, A.; Orero, A.; Moliner, L.; Carles, M.; Sánchez, F.; Benlloch, J. M.; Correcher, C.; Carrilero, V.; Seimetz, M.

    2011-08-01

    Whole-body Positron Emission Tomography (PET) scanners are required in order to span large Fields of View (FOV). Therefore, reaching the sensitivity and spatial resolution required for early stage breast tumor detection is not straightforward. MAMMI is a dedicated breast PET scanner with a ring geometry designed to provide PET images with a spatial resolution as high as 1.5 mm, being able to detect small breast tumors (<1cm). The patient lays down in prone position during the scan, thus making possible to image the whole breast, up to regions close to the base of the pectoral without the requirement of breast compression.Attenuation correction (AC) for PET data improves the image quality and the quantitative accuracy of radioactivity distribution determination. In dedicated, high resolution breast cancer scanners, this correction would enhance the proper diagnosis in early disease stages. In whole-body PET scanners, AC is usually taken into account with the use of transmission scans, either by external radioactive rod sources or by Computed Tomography (CT). This considerably increases the radiation dose administered to the patient and time needed for the exploration. In this work we propose a method for breast shape identification by means of PET image segmentation. The breast shape identification will be used for the determination of the AC. For the case of a specific breast PET scanner the procedure we propose should provide AC similar to that obtained by transmission scans as we take advantage of the breast anatomical simplicity. Experimental validation of the proposed approach with a dedicated breast PET prototype is also presented. The main advantage of this method is an important dose reduction since the transmission scan is not required.

  12. Natural attenuation general data guide. Final report

    SciTech Connect

    Kram, M.L.; Goetz, F.

    1999-02-01

    This guide is a decision-making tool to help remedial project managers (RPMs) determine whether natural attenuation can be used as a remedial option at contaminant release sites. Data requirements and methodology to evaluate the potential for using natural attenuation are presented. For sites where the natural attenuation remedial option is implemented, tables of commonly measured parameters, general data collection rationale, and interpretation guidance are included. This format allows the RPM to recognize data gaps, interpret data, construct a conceptual site model, and develop a sampling and analysis plan for evaluation and monitoring purposes.

  13. Database tomography for commercial application

    NASA Technical Reports Server (NTRS)

    Kostoff, Ronald N.; Eberhart, Henry J.

    1994-01-01

    Database tomography is a method for extracting themes and their relationships from text. The algorithms, employed begin with word frequency and word proximity analysis and build upon these results. When the word 'database' is used, think of medical or police records, patents, journals, or papers, etc. (any text information that can be computer stored). Database tomography features a full text, user interactive technique enabling the user to identify areas of interest, establish relationships, and map trends for a deeper understanding of an area of interest. Database tomography concepts and applications have been reported in journals and presented at conferences. One important feature of the database tomography algorithm is that it can be used on a database of any size, and will facilitate the users ability to understand the volume of content therein. While employing the process to identify research opportunities it became obvious that this promising technology has potential applications for business, science, engineering, law, and academe. Examples include evaluating marketing trends, strategies, relationships and associations. Also, the database tomography process would be a powerful component in the area of competitive intelligence, national security intelligence and patent analysis. User interests and involvement cannot be overemphasized.

  14. Double-Difference Adjoint Tomography

    NASA Astrophysics Data System (ADS)

    Yuan, Yanhua O.; Simons, Frederik J.; Tromp, Jeroen

    2016-04-01

    We introduce a double-difference method for the inversion of seismic wavespeed structure by adjoint tomography. Differences between seismic observations and model-based predictions at individual stations may arise from factors other than structural heterogeneity, such as errors in the assumed source-time function, inaccurate timings, and systematic uncertainties. To alleviate the corresponding nonuniqueness in the inverse problem, we construct differential measurements between stations, thereby largely canceling out the source signature and systematic errors. We minimize the discrepancy between observations and simulations in terms of differential measurements made on station pairs. We show how to implement the double-difference concept in adjoint tomography, both theoretically and in practice. We compare the sensitivities of absolute and differential measurements. The former provide absolute information on structure along the ray paths between stations and sources, whereas the latter explain relative (and thus higher-resolution) structural variations in areas close to the stations. Whereas in conventional tomography, a measurement made on a single earthquake-station pair provides very limited structural information, in double-difference tomography, one earthquake can actually resolve significant details of the structure. The double-difference methodology can be incorporated into the usual adjoint tomography workflow by simply pairing up all conventional measurements; the computational cost of the necessary adjoint simulations is largely unaffected. Rather than adding to the computational burden, the inversion of double-difference measurements merely modifies the construction of the adjoint sources for data assimilation.

  15. New Research on MEMS Acoustic Vector Sensors Used in Pipeline Ground Markers

    PubMed Central

    Song, Xiaopeng; Jian, Zeming; Zhang, Guojun; Liu, Mengran; Guo, Nan; Zhang, Wendong

    2015-01-01

    According to the demands of current pipeline detection systems, the above-ground marker (AGM) system based on sound detection principle has been a major development trend in pipeline technology. A novel MEMS acoustic vector sensor for AGM systems which has advantages of high sensitivity, high signal-to-noise ratio (SNR), and good low frequency performance has been put forward. Firstly, it is presented that the frequency of the detected sound signal is concentrated in a lower frequency range, and the sound attenuation is relatively low in soil. Secondly, the MEMS acoustic vector sensor structure and basic principles are introduced. Finally, experimental tests are conducted and the results show that in the range of 0°∼90°, when r = 5 m, the proposed MEMS acoustic vector sensor can effectively detect sound signals in soil. The measurement errors of all angles are less than 5°. PMID:25609046

  16. New research on MEMS acoustic vector sensors used in pipeline ground markers.

    PubMed

    Song, Xiaopeng; Jian, Zeming; Zhang, Guojun; Liu, Mengran; Guo, Nan; Zhang, Wendong

    2015-01-01

    According to the demands of current pipeline detection systems, the above-ground marker (AGM) system based on sound detection principle has been a major development trend in pipeline technology. A novel MEMS acoustic vector sensor for AGM systems which has advantages of high sensitivity, high signal-to-noise ratio (SNR), and good low frequency performance has been put forward. Firstly, it is presented that the frequency of the detected sound signal is concentrated in a lower frequency range, and the sound attenuation is relatively low in soil. Secondly, the MEMS acoustic vector sensor structure and basic principles are introduced. Finally, experimental tests are conducted and the results show that in the range of 0°~90°, when r = 5 m, the proposed MEMS acoustic vector sensor can effectively detect sound signals in soil. The measurement errors of all angles are less than 5°.

  17. Comparison of ordered subsets expectation maximization and Chang's attenuation correction method in quantitative cardiac SPET: a phantom study.

    PubMed

    Dey, D; Slomka, P J; Hahn, L J; Kloiber, R

    1998-12-01

    Photon attenuation is one of the primary causes of artifacts in cardiac single photon emission tomography (SPET). Several attenuation correction algorithms have been proposed. The aim of this study was to compare the effect of using the ordered subsets expectation maximization (OSEM) reconstruction algorithm and Chang's non-uniform attenuation correction method on quantitative cardiac SPET. We performed SPET scans of an anthropomorphic phantom simulating normal and abnormal myocardial studies. Attenuation maps of the phantom were obtained from computed tomographic images. The SPET projection data were corrected for attenuation using OSEM reconstruction, as well as Chang's method. For each defect scan and attenuation correction method, we calculated three quantitative parameters: average radial maximum (ARM) ratio of the defect-to-normal area, maximum defect contrast (MDC) and defect volume, using automated three-dimensional quantitation. The differences between the two methods were less than 4% for defect-to-normal ARM ratio, 19% for MDC and 13% for defect volume. These differences are within the range of estimated statistical variation of SPET. The calculation times of the two methods were comparable. For all SPET studies, OSEM attenuation correction gave a more correct activity distribution, with respect to both the homogeneity of the radiotracer and the shape of the cardiac insert. The difference in uniformity between OSEM and Chang's method was quantified by segmental analysis and found to be less than 8% for the normal study. In conclusion, OSEM and Chang's attenuation correction are quantitatively equivalent, with comparable calculation times. OSEM reconstruction gives a more correct activity distribution and is therefore preferred.

  18. Global Completability with Applications to Self-Consistent Quantum Tomography

    NASA Astrophysics Data System (ADS)

    Stark, Cyril Jakob

    2016-11-01

    Let {{p}1,ldots, {p}N in R^D} be unknown vectors and let {Ω subseteq {1,ldots,N}2}. Assume that the inner products {{p}i^T {p}j} are fixed for all {(i,j) in Ω}. Do these inner product constraints (up to simultaneous rotation of all vectors) determine {{p}1, ldots, {p}N} uniquely? Here we derive a necessary and sufficient condition for the uniqueness of {{p}1, ldots,{p}N} (i.e., global completability) which is applicable to a large class of practically relevant sets {Ω}. Moreover, given {Ω}, we show that the condition for global completability is universal in the sense that for almost all vectors {{p}1, ldots,{p}N in RD} the completability of {{p}1, ldots,{p}N} only depends on {Ω} and not on the specific values of {{p}i^T {p}j} for {(i,j) in Ω}. This work was motivated by practical considerations, namely, matrix factorization techniques and self-consistent quantum tomography.

  19. UHF Radio Wave Attenuation Factor Database

    NASA Astrophysics Data System (ADS)

    Khomenko, S. I.; Kostina, V. L.; Mytsenko, I. M.; Roenko, A. N.

    2007-07-01

    As is known each sea-going vessel is equipped with navigation, communication and other radio engineering facilities that serve to secure the safety of navigation and are chiefly operated at UHF-wave band. In developing these systems and calculating the energy potential for a necessary coverage range one should be well aware of the radio signal attenuation processes on a propagation path. The key parameter of this path is the (radio) wave attenuation factor V and its distance dependence V(R). A diversity of factors influencing the radio signal attenuation over the oceanic expanses, especially well pronounced and quite stable tropospheric ducts, and the lack of experimental data were the compelling reasons why the researchers of the Institute for Radiophysics and Electronics, NASU, had spent many years on comprehensive radiophysical investigations carried out in different regions of the Atlantic, Indian, Arctic and Pacific Oceans. The experimental data obtained allow creating the database of radio wave attenuation factor V.

  20. Attenuation of external Bremsstrahlung in metallic absorbers

    SciTech Connect

    Dhaliwal, A.S.; Powar, M.S.; Singh, M. )

    1990-12-01

    In this paper attenuation of bremsstrahlung from {sup 147}Pm and {sup 170}Tm beta emitters has been studied in aluminum, copper, tin, and lead metallic absorbers. Bremsstrahlung spectra and mass attenuation coefficients for monoenergetic gamma rays are used to calculate theoretical attenuation curves. Magnetic deflection and beta stopping techniques are used to measure the integral bremsstrahlung intensities above 30 keV in different target thicknesses. Comparison of measured and calculated attenuation curves shows a good agreement for various absorbers, thus providing a test of this technique, which may be useful in understanding bremsstrahlung intensity buildup and in the design of optimum shielding for bremsstrahlung sources. It is found that the absorption of bremsstrahlung in metallic absorbers does not obey an exponential law and that absorbers act as energy filters.

  1. Evolution of Natural Attenuation Evaluation Protocols

    EPA Science Inventory

    Traditionally the evaluation of the efficacy of natural attenuation was based on changes in contaminant concentrations and mass reduction. Statistical tools and models such as Bioscreen provided evaluation protocols which now are being approached via other vehicles including m...

  2. Quantum gate-set tomography

    NASA Astrophysics Data System (ADS)

    Blume-Kohout, Robin

    2014-03-01

    Quantum information technology is built on (1) physical qubits and (2) precise, accurate quantum logic gates that transform their states. Developing quantum logic gates requires good characterization - both in the development phase, where we need to identify a device's flaws so as to fix them, and in the production phase, where we need to make sure that the device works within specs and predict residual error rates and types. This task falls to quantum state and process tomography. But until recently, protocols for tomography relied on a pre-existing and perfectly calibrated reference frame comprising the measurements (and, for process tomography, input states) used to characterize the device. In practice, these measurements are neither independent nor perfectly known - they are usually implemented via exactly the same gates that we are trying to characterize! In the past year, several partial solutions to this self-consistency problem have been proposed. I will present a framework (gate set tomography, or GST) that addresses and resolves this problem, by self-consistently characterizing an entire set of quantum logic gates on a black-box quantum device. In particular, it contains an explicit closed-form protocol for linear-inversion gate set tomography (LGST), which is immune to both calibration error and technical pathologies like local maxima of the likelihood (which plagued earlier methods). GST also demonstrates significant (multiple orders of magnitude) improvements in efficiency over standard tomography by using data derived from long sequences of gates (much like randomized benchmarking). GST has now been applied to qubit devices in multiple technologies. I will present and discuss results of GST experiments in technologies including a single trapped-ion qubit and a silicon quantum dot qubit. Sandia National Laboratories is a multiprogram laboratory operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U

  3. In-situ Neutron Tomography on Mixing Behavior of Supercritical Water and Room Temperature Water in a Tubular Flow Reactor

    NASA Astrophysics Data System (ADS)

    Takami, Seiichi; Sugioka, Ken-ichi; Ozawa, Kyohei; Tsukada, Takao; Adschiri, Tadafumi; Sugimoto, Katsumi; Takenaka, Nobuyuki; Saito, Yasushi

    We have synthesized metal oxide nanoparticles through hydrothermal reaction at around 400 °C and 25 MPa by mixing the stream of metal ion solution at room temperature with another stream of supercritical water in a continuous flow-type reactor. In order to visualize the mixing behavior of the two streams, we performed neutron tomography measurements. By performing tomography measurements while rotating the mixing piece with supplying supercritical water and room temperature water, we succeeded in obtaining the three dimensional distribution of neutron attenuation. The results clearly showed how the two streams mix, which serves as a reference for numerical simulation.

  4. Therapeutic efficacy of oral immunization with attenuated Salmonella typhimurium expressing Helicobacter pylori CagA, VacA and UreB fusion proteins in mice model.

    PubMed

    Liu, Kai-Yun; Shi, Yun; Luo, Ping; Yu, Shu; Chen, Li; Zhao, Zhuo; Mao, Xu-Hu; Guo, Gang; Wu, Chao; Zou, Quan-Ming

    2011-09-01

    Therapeutic vaccination is a desirable alternative for controlling Helicobacter pylori (H. pylori) infection. In the present study, attenuated Salmonella vector vaccines were constructed that expressed fusion proteins complexed with H. pylori CagA, VacA and UreB in different arrangements, and their therapeutic efficacy was evaluated in H. pylori-infected mice. Oral therapeutic immunization with attenuated Salmonella, which expressed the fused protein CVU, significantly decreased H. pylori colonization in the stomach; protection was related to specific CD4(+) T cell Th1 type responses and serum IgG and mucosal sIgA antibody responses. These findings suggested that therapeutic efficacy was related to the arrangement of the fusion protein. It is possible that arrangement decides the expression of recombinant antigen in mice, and the latter results in different therapeutic efficacy. The attenuated Salmonella vector vaccine, which expressed the fused protein arrangement CVU, is superior to others, and could be a candidate vaccine against H. pylori.

  5. Stability of a Vesicular Stomatitis Virus-Vectored Ebola Vaccine.

    PubMed

    Arnemo, Marianne; Viksmoen Watle, Sara Sofie; Schoultz, Kristin Merete; Vainio, Kirsti; Norheim, Gunnstein; Moorthy, Vasee; Fast, Patricia; Røttingen, John-Arne; Gjøen, Tor

    2016-03-15

    The live attenuated vesicular stomatitis virus-vectored Ebola vaccine rVSV-ZEBOV is currently undergoing clinical trials in West Africa. The vaccine is to be stored at -70°C or less. Since maintaining the cold chain is challenging in rural areas, the rVSV-ZEBOV vaccine's short-term and long-term stability at different temperatures was examined. Different dilutions were tested since the optimal vaccine dosage had not yet been determined at the start of this experiment. The results demonstrate that the original vaccine formulation was stable for 1 week at 4°C and for 24 hours at 25°C. The stability of the vaccine was compromised by both high temperatures and dilution. PMID:26563239

  6. Electron Effective-Attenuation-Length Database

    National Institute of Standards and Technology Data Gateway

    SRD 82 NIST Electron Effective-Attenuation-Length Database (PC database, no charge)   This database provides values of electron effective attenuation lengths (EALs) in solid elements and compounds at selected electron energies between 50 eV and 2,000 eV. The database was designed mainly to provide EALs (to account for effects of elastic-eletron scattering) for applications in surface analysis by Auger-electron spectroscopy (AES) and X-ray photoelectron spectroscopy (XPS).

  7. Development of ground motion attenuation relationships for southern Italy based on attenuation models and stochastic simulations

    NASA Astrophysics Data System (ADS)

    D'Amico, Sebastiano

    2011-12-01

    The evaluation of the expected peak ground motion caused by an earthquake is an important problem in earthquake seismology. It is particularly important for regions where strong-motion data are lacking. With the approach presented in this study of using data from small earthquakes, it is possible to extrapolate the peak motion parameters beyond the magnitude range of the weak-motion data set on which they are calculated. To provide a description of the high frequency attenuation and ground motion parameters in southern Italy we used seismic recordings coming from two different projects: the SAPTEX (Southern Apennines Tomography Experiment) and the CAT/SCAN (Calabria Apennine Tyrrhenian - Subduction Collision Accretion Network). We used about 10,000 records with magnitudes between M=2.5 and M=4.7. Using regression model with the large number of weak-motion data, the regional propagation and the absolute source scaling were determined. To properly calibrate the source scaling it was necessary to compute moment magnitudes of several events in the data set. We computed the moment tensor solutions using the "Cut And Paste" and the SLUMT methods. Both methods determine the source depth, moment magnitude and focal mechanisms using a grid search technique. The methods provide quality solutions in the area in a magnitude range (2.5-4.5) that has been too small to be included in the Italian national earthquake catalogues. The derived database of focal mechanisms allowed us to better detail the transitional area in the Messina Strait between the extensional domain related to subduction trench retreat (southern Calabria) and the compressional one associated with continental collision (central-western Sicily). Stochastic simulations are generated for finite-fault ruptures using the derived propagation parameters to predict the absolute peaks of the ground acceleration for several faults, magnitude, and distance range, as well as beyond the magnitude range of the weak

  8. Present status of vectorized Monte Carlo

    SciTech Connect

    Brown, F.B.

    1987-01-01

    Monte Carlo applications have traditionally been limited by the large amounts of computer time required to produce acceptably small statistical uncertainties, so the immediate benefit of vectorization is an increase in either the number of jobs completed or the number of particles processed per job, typically by one order of magnitude or more. This results directly in improved engineering design analyses, since Monte Carlo methods are used as standards for correcting more approximate methods. The relatively small number of vectorized programs is a consequence of the newness of vectorized Monte Carlo, the difficulties of nonportability, and the very large development effort required to rewrite or restructure Monte Carlo codes for vectorization. Based on the successful efforts to date, it may be concluded that Monte Carlo vectorization will spread to increasing numbers of codes and applications. The possibility of multitasking provides even further motivation for vectorizing Monte Carlo, since the step from vector to multitasked vector is relatively straightforward.

  9. Symbolic Vector Analysis in Plasma Physics

    SciTech Connect

    Qin, H.; Rewoldt, G.; Tang, W.M.

    1997-10-01

    Many problems in plasma physics involve substantial amounts of analytical vector calculation. The complexity usually originates from both the vector operations themselves and the choice of underlying coordinate system. A computer algebra package for symbolic vector analysis in general coordinate systems, GeneralVectorAnalysis (GVA), is developed using Mathematica. The modern viewpoint for 3D vector calculus, differential forms on 3-manifolds, is adopted to unify and systematize the vector calculus operations in general coordinate systems. This package will benefit physicists and applied mathematicians in their research where complicated vector analysis is required. It will not only save a huge amount of human brain-power and dramatically improve accuracy, but this package will also be an intelligent tool to assist researchers in finding the right approaches to their problems. Several applications of this symbolic vector analysis package to plasma physics are also given.

  10. Symbolic Vector Analysis in Plasma Physics

    SciTech Connect

    Qin, H.; Tang, W.M.; Rewoldt, G.

    1997-10-09

    Many problems in plasma physics involve substantial amounts of analytical vector calculation. The complexity usually originates from both the vector operations themselves and the choice of underlying coordinate system. A computer algebra package for symbolic vector analysis in general coordinate systems, General Vector Analysis (GVA), is developed using Mathematica. The modern viewpoint for 3D vector calculus, differential forms on 3-manifolds, is adopted to unify and systematize the vector calculus operations in general coordinate systems. This package will benefit physicists and applied mathematicians in their research where complicated vector analysis is required. It will not only save a huge amount of human brain-power and dramatically improve accuracy, but this package will also be an intelligent tool to assist researchers in finding the right approaches to their problems. Several applications of this symbolic vector analysis package to plasma physics are also given.

  11. Advances in lentiviral vectors: a patent review.

    PubMed

    Picanco-Castro, Virginia; de Sousa Russo-Carbolante, Elisa Maria; Tadeu Covas, Dimas

    2012-08-01

    Lentiviral vectors are at the forefront of gene delivery systems for research and clinical applications. These vectors have the ability to efficiently transduce nondividing and dividing cells, to insert large genetic segment in the host chromatin, and to sustain stable long-term transgene expression. Most of lentiviral vectors systems in use are derived from HIV-1. Numerous modifications in the basic HIV structure have been made to ensure safety and to promote efficiency to vectors. Lentiviral vectors can be pseudotyped with distinct viral envelopes that influence vector tropism and transduction efficiency. Moreover, these vectors can be used to reprogram cells and generate induced pluripotent stem cells. This review aims to show the patents that resulted in improved safety and efficacy of lentiviral vector with important implications for clinical trials.

  12. Electron tomography of dislocation structures

    SciTech Connect

    Liu, G.S.; House, S.D.; Kacher, J.; Tanaka, M.; Higashida, K.; Robertson, I.M.

    2014-01-15

    Recent developments in the application of electron tomography for characterizing microstructures in crystalline solids are described. The underlying principles for electron tomography are presented in the context of typical challenges in adapting the technique to crystalline systems and in using diffraction contrast imaging conditions. Methods for overcoming the limitations associated with the angular range, the number of acquired images, and uniformity of image contrast are introduced. In addition, a method for incorporating the real space coordinate system into the tomogram is presented. As the approach emphasizes development of experimental solutions to the challenges, the solutions developed and implemented are presented in the form of examples.

  13. [Computer tomography in acute pyelonephritis].

    PubMed

    Triller, J; Scheidegger, J; Terrier, F

    1983-07-01

    Computer tomography of the kidneys was performed on 30 patients with acute renal infections (acute suppurative pyelonephritis, acute renal abscess, infected cyst, pyelonephrosis, calculus perforation, retroperitoneal abscess). Computer tomography provided more accurate information concerning the extent of the renal and extra-renal inflammatory process than did the urogram or sonogram. This may significantly affect the choice of treatment, particularly concerning the use of drugs or of surgery. Angiography and retrograde pyelography may be used in selected cases, especially where there is a suspicion of acute bacterial nephritis, renal vein thrombosis or ureteric obstruction.

  14. Attenuation of noise by motorcycle safety helmets.

    PubMed

    Młyński, Rafał; Kozłowski, Emil; Zera, Jan

    2009-01-01

    For workers such as police motorcyclists or couriers, traffic and engine noise reaching the ears is an important factor contributing to the overall condition of their work. This noise can be reduced with motorcycle helmets. In this study, insertion loss of motorcycle helmets was measured with the microphone-in-real-ear technique and sound attenuation with the real-ear-at-threshold method. Results for 3 Nolan helmets show essentially no protection against external noise in the frequency range <250 Hz. In the frequency range >500 Hz, attenuation increases linearly at a rate of 8-9 dB per octave, to ~30 dB at 8 kHz. Lack of attenuation in the low-frequency range may cause annoying effects. In addition, high attenuation in the high-frequency range may decrease intelligibility of speech signals for a rider in a helmet. Attenuation measured in this study does not take into account noise generated by turbulent wind around the helmet. Thus, the measured values of attenuation represent a motorcycle rider's best conditions of hearing. PMID:19744370

  15. Sensory Attenuation for Jointly Produced Action Effects

    PubMed Central

    Loehr, Janeen D.

    2012-01-01

    Successful joint action often requires people to distinguish between their own and others’ contributions to a shared goal. One mechanism that is thought to underlie a self-other distinction is sensory attenuation, whereby the sensory consequences of one’s own actions are reduced compared to other sensory events. Previous research has shown that the auditory N1 event-related potential (ERP) response is reduced for self-generated compared to externally generated tones. The current study examined whether attenuation also occurs for jointly generated tones, which require two people to coordinate their actions to produce a single tone. ERP responses were measured when participants generated tones alone (tone onset immediately followed the participant’s button press) or with a partner (tone onset immediately followed the participant’s or the partner’s button press, whichever occurred second). N1 attenuation was smaller for jointly generated tones compared to self-generated tones. For jointly generated tones, greater delays between the participant’s and the partner’s button presses were associated with reduced attenuation; moreover, only trials in which there was no delay between the participant’s press and tone onset showed attenuation, whereas trials in which there were delays did not show attenuation. These findings indicate that people differentiate between their own and another person’s contributions to a joint action at the sensorimotor level, even when they must act together to produce a single, shared effect. PMID:23596429

  16. Cardiac Computed Tomography (Multidetector CT, or MDCT)

    MedlinePlus

    ... High Blood Pressure Tools & Resources Stroke More Cardiac Computed Tomography (Multidetector CT, or MDCT) Updated:Sep 3,2015 ... facts MDCT is a very fast type of computed tomography (CT) scan. MDCT creates pictures of the healthy ...

  17. Vector computer memory bank contention

    NASA Technical Reports Server (NTRS)

    Bailey, D. H.

    1985-01-01

    A number of vector supercomputers feature very large memories. Unfortunately the large capacity memory chips that are used in these computers are much slower than the fast central processing unit (CPU) circuitry. As a result, memory bank reservation times (in CPU ticks) are much longer than on previous generations of computers. A consequence of these long reservation times is that memory bank contention is sharply increased, resulting in significantly lowered performance rates. The phenomenon of memory bank contention in vector computers is analyzed using both a Markov chain model and a Monte Carlo simulation program. The results of this analysis indicate that future generations of supercomputers must either employ much faster memory chips or else feature very large numbers of independent memory banks.

  18. Vector computer memory bank contention

    NASA Technical Reports Server (NTRS)

    Bailey, David H.

    1987-01-01

    A number of vector supercomputers feature very large memories. Unfortunately the large capacity memory chips that are used in these computers are much slower than the fast central processing unit (CPU) circuitry. As a result, memory bank reservation times (in CPU ticks) are much longer than on previous generations of computers. A consequence of these long reservation times is that memory bank contention is sharply increased, resulting in significantly lowered performance rates. The phenomenon of memory bank contention in vector computers is analyzed using both a Markov chain model and a Monte Carlo simulation program. The results of this analysis indicate that future generations of supercomputers must either employ much faster memory chips or else feature very large numbers of independent memory banks.

  19. Medium Modification of Vector Mesons

    SciTech Connect

    Chaden Djalali, Michael Paolone, Dennis Weygand, Michael H. Wood, Rakhsha Nasseripour

    2011-03-01

    The theory of the strong interaction, Quantum Chromodynamics (QCD), has been remarkably successful in describing high-energy and short-distance-scale experiments involving quarks and gluons. However, applying QCD to low energy and large-distance scale experiments has been a major challenge. Various QCD-inspired models predict a partial restoration of chiral symmetry in nuclear matter with modifications of the properties of hadrons from their free-space values. Measurable changes such as a shift in mass and/or a change of width are predicted at normal nuclear density. Photoproduction of vector mesons off nuclei have been performed at different laboratories. The properties of the ρ, ω and φ mesons are investigated either directly by measuring their mass spectra or indirectly through transparency ratios. The latest results regarding medium modifications of the vector mesons in the nuclear medium will be discussed.

  20. Lentiviral vectors in cancer immunotherapy.

    PubMed

    Oldham, Robyn Aa; Berinstein, Elliot M; Medin, Jeffrey A

    2015-01-01

    Basic science advances in cancer immunotherapy have resulted in various treatments that have recently shown success in the clinic. Many of these therapies require the insertion of genes into cells to directly kill them or to redirect the host's cells to induce potent immune responses. Other analogous therapies work by modifying effector cells for improved targeting and enhanced killing of tumor cells. Initial studies done using γ-retroviruses were promising, but safety concerns centered on the potential for insertional mutagenesis have highlighted the desire to develop other options for gene delivery. Lentiviral vectors (LVs) have been identified as potentially more effective and safer alternative delivery vehicles. LVs are now in use in clinical trials for many different types of inherited and acquired disorders, including cancer. This review will discuss current knowledge of LVs and the applications of this viral vector-based delivery vehicle to cancer immunotherapy.