Music for Mothers and Babies Living in a Prison: A Report on a Special Production of "BebeBaba"

ERIC Educational Resources Information Center

Rodrigues, Helena; Leite, Anabela; Faria, Cristina; Monteiro, Irene; Rodrigues, Paulo Maria

2010-01-01

"BebeBaba" is a project that combines education and artistic performance in a process that is centred on music, babies and their parents. We discovered that previous productions resulted in a very strong bonding among parents and babies, families and the community. In 2008 we implemented a special production in a prison in Oporto where…

Helicobacter pylori vacA s1m1 genotype but not cagA or babA2 increase the risk of ulcer and gastric cancer in patients from Southern Mexico.

PubMed

Román-Román, Adolfo; Martínez-Carrillo, Dinorah Nashely; Atrisco-Morales, Josefina; Azúcar-Heziquio, Julio César; Cuevas-Caballero, Abner Saúl; Castañón-Sánchez, Carlos Alberto; Reyes-Ríos, Roxana; Betancourt-Linares, Reyes; Reyes-Navarrete, Salomón; Cruz-Del Carmen, Iván; Camorlinga-Ponce, Margarita; Cortés-Malagón, Enoc Mariano; Fernández-Tilapa, Gloria

2017-01-01

The vacA , cagA and babA2 genotypes of Helicobacter pylori are associated with gastric pathology. The objectives were to determine the frequency of infection and distribution of the vacA , cagA and babA2 genotypes of H. pylori in patients with gastric ulcer, chronic gastritis and gastric cancer, and to evaluate the association of virulent genotypes with diagnosis. We studied 921 patients with symptoms of dyspepsia or with presumptive diagnosis of gastric cancer. The DNA of H. pylori and the vacA , cagA and babA2 genes was detected by PCR in total DNA from gastric biopsies. The association of H. pylori and of its cagA , vacA and babA2 genotypes with diagnosis was determined by calculating the odds ratio (OR). Chronic gastritis was confirmed in 767 patients, gastric ulcer in 115 and cancer in 39. The prevalence of H. pylori was 47.8, 49.6 and 61.5% in those groups, respectively. H. pylori was more frequent in the surrounding tissue (69.2%) than in the tumor (53.8%). The vacA s1m1 genotype predominated in the three groups (45.2, 61.4 and 83.3%, respectively). H. pylori was associated with cancer (OR adjusted  = 2.08; 95% CI 1.05-4.13; p  = 0.035) but not with ulcer (OR adjusted  = 1.07; 95% CI 0.71-1.61; p  = 0.728). The s1m1 genotype was associated with ulcer and cancer (OR adjusted  = 2.02; 95% CI 1.12-3.62; p  = 0.019 and OR adjusted  = 6.58; 95% CI 2.15-20.08; p  = 0.001, respectively). babA2 was associated with gastric cancer, and cagA was not associated with the diagnosis. In population from Southern Mexico, H. pylori and the s1m1 genotype were associated with gastric cancer and the s1m1 / cagA +/ babA2 + strains predominated in tumor and adjacent tissue.

Prospective, randomized, and controlled trial on ketamine infusion during bilateral axillo-breast approach (BABA) robotic or endoscopic thyroidectomy: Effects on postoperative pain and recovery profiles

PubMed Central

Kim, Dong-Ho; Choi, June Young; Kim, Byoung-Gook; Hwang, Jin-Young; Park, Seong-Joo; Oh, Ah-Young; Jeon, Young-Tae; Ryu, Jung-Hee

2016-01-01

Abstract Background: Robotic or endoscopic thyroidectomy using bilateral axillo-breast approach (BABA) is frequently performed for excellent cosmesis. However, postoperative pain is remained as concerns due to the extent tissue dissection and tension during the operation. Ketamine is a noncompetitive N-methyl-d-aspartate (NMDA) receptor antagonist that reduces acute postoperative pain. We evaluated the effects of intraoperative ketamine infusion on postoperative pain control and recovery profiles following BABA robotic or endoscopic thyroidectomy. Methods: Fifty-eight adult patients scheduled for BABA robotic or endoscopic thyroidectomy were randomized into a control group (n = 29) and ketamine group (n = 29). Following induction of anesthesia, patients in each group were infused with the same volume of saline or ketamine solution (1 mg/kg bolus, 60 μg/kg/h continuous infusion). Total intravenous anesthesia with propofol and remifentanil was used to induce and maintain anesthesia. Pain scores (101-point numerical rating scale, 0 = no pain, 100 = the worst imaginable pain), the consumption of rescue analgesics, and other postoperative adverse effects were assessed at 1, 6, 24, and 48 hours postoperatively. Results: Patients in the ketamine group reported lower pain scores than those in the control group at 6 hours (30 [30] vs 50 [30]; P = 0.017), 24 hours (20 [10] vs 30 [20]; P < 0.001), and 48 hours (10 [10] vs 20 [15]; P < 0.001) in neck area. No statistically significant differences were found between the 2 groups in terms of the requirements for rescue analgesics or the occurrence of adverse events. Conclusion: Intravenous ketamine infusion during anesthesia resulted in lower postoperative pain scores following BABA robotic or endoscopic thyroidectomy, with no increase in adverse events. PMID:27930531

In memoriam - William Toshio (Tosh) Yasutake, 1922-2016

USGS Publications Warehouse

Elliott, Diane G.; Winton, James R.

2017-01-01

William Toshio (Tosh) Yasutake, 1922-2016 passed away peacefully at home on December 12, 2016, at the age of 94. He is survived by Fumi, his wife of 66 years, as well as four children and six grandchildren. With his death, the fish health community has lost an outstanding scientist as well as a kind, unassuming, and wonderful human being. Tosh was born on June 10, 1922, in Seattle, Washington, to Jack and Hide Yasutake. He was in his first year of studies at the University of Washington when Pearl Harbor was attacked by Imperial Japan on December 7, 1941. Following the attack, Tosh and his family (father, mother, sister, and two brothers) were among the 110,000–120,000 people of Japanese ancestry who were forced from their homes on the Pacific coast and incarcerated in internment camps in the interior. In June 1942, Tosh enlisted in the U.S. Army, serving as an unarmed combat medic in the famed 442nd Regimental Combat Team, the most decorated unit for its size and length of service in the history of American warfare. Wounded in October 1944 during the Vosges Mountains campaign near Bruyères, France, Tosh was evacuated and missed the ensuing battle to rescue the “Lost Battalion,” at which his replacement was killed. Tosh returned to action in Italy in February 1945 and served until the end of the war in Europe, earning both a Purple Heart and a Bronze Star for bravery. In October 2010, the Congressional Gold Medal was awarded to the 442nd Regimental Combat Team, and in 2012 the surviving members were made chevaliers of the French Légion d’Honneur for actions contributing to the liberation of France in World War II.After the war, Tosh returned to the University of Washington on the GI Bill and received a B.S. degree in zoology in 1951. In 1953 he began his research career at the U.S. Fish and Wildlife Service’s Western Fish Nutrition Laboratory at Cook, Washington, where he conducted pioneering research on nutritional fish diseases with John Halver. Tosh

Protaeolidiella atra Baba, 1955 versus Pleurolidia juliae Burn, 1966: One or two species?

NASA Astrophysics Data System (ADS)

Carmona, Leila; Pola, Marta; Gosliner, Terrence M.; Cervera, Juan Lucas

2015-06-01

Protaeolidiella atra Baba, 1955 and Pleurolidia juliae Burn, 1966 are two species traditionally regarded as the members of Aeolidiidae but recently attributed to Facelinidae. Because of their apparent similarities, Rudman (J Molluscan Stud 56:505-514, 1990) rendered P. juliae as a junior synonym of P. atra. In this paper, we conducted a review of both species and completed their descriptions with new data regarding the anatomy of the reproductive system . P. atra and P. juliae have differences in their colouration, number of cerata and characteristics of their reproductive system. Based on these differences, we conclude that these species are not conspecific and should be regarded as distinct taxa.

Prospective, randomized, and controlled trial on ketamine infusion during bilateral axillo-breast approach (BABA) robotic or endoscopic thyroidectomy: Effects on postoperative pain and recovery profiles: A consort compliant article.

PubMed

Kim, Dong-Ho; Choi, June Young; Kim, Byoung-Gook; Hwang, Jin-Young; Park, Seong-Joo; Oh, Ah-Young; Jeon, Young-Tae; Ryu, Jung-Hee

2016-12-01

Robotic or endoscopic thyroidectomy using bilateral axillo-breast approach (BABA) is frequently performed for excellent cosmesis. However, postoperative pain is remained as concerns due to the extent tissue dissection and tension during the operation. Ketamine is a noncompetitive N-methyl-D-aspartate (NMDA) receptor antagonist that reduces acute postoperative pain. We evaluated the effects of intraoperative ketamine infusion on postoperative pain control and recovery profiles following BABA robotic or endoscopic thyroidectomy. Fifty-eight adult patients scheduled for BABA robotic or endoscopic thyroidectomy were randomized into a control group (n = 29) and ketamine group (n = 29). Following induction of anesthesia, patients in each group were infused with the same volume of saline or ketamine solution (1 mg/kg bolus, 60 μg/kg/h continuous infusion). Total intravenous anesthesia with propofol and remifentanil was used to induce and maintain anesthesia. Pain scores (101-point numerical rating scale, 0 = no pain, 100 = the worst imaginable pain), the consumption of rescue analgesics, and other postoperative adverse effects were assessed at 1, 6, 24, and 48 hours postoperatively. Patients in the ketamine group reported lower pain scores than those in the control group at 6 hours (30 [30] vs 50 [30]; P = 0.017), 24 hours (20 [10] vs 30 [20]; P < 0.001), and 48 hours (10 [10] vs 20 [15]; P < 0.001) in neck area. No statistically significant differences were found between the 2 groups in terms of the requirements for rescue analgesics or the occurrence of adverse events. Intravenous ketamine infusion during anesthesia resulted in lower postoperative pain scores following BABA robotic or endoscopic thyroidectomy, with no increase in adverse events.

Preoperative flap-site injection with ropivacaine and epinephrine in BABA robotic and endoscopic thyroidectomy safely reduces postoperative pain: A CONSORT-compliant double-blinded randomized controlled study (PAIN-BREKOR trial).

PubMed

Lee, Joon-Hyop; Suh, Yong Joon; Song, Ra-Yeong; Yi, Jin Wook; Yu, Hyeong Won; Kwon, Hyungju; Choi, June Young; Lee, Kyu Eun

2017-06-01

Clinical trials on bilateral axillo-breast approach (BABA) thyroidectomy show that levobupivacaine and ropivacaine significantly reduce postoperative pain, but they focused on BABA robotic thyroidectomy only and did not identify specific sites of significant pain relief. Our objective was to assess the pain reduction at various sites and safety of ropivacaine-epinephrine flap injection in BABA thyroidectomy. This prospective double-blinded randomized controlled trial was conducted in compliance with the revised CONSORT statement (ClinicalTrials.gov registration no. NCT02112370). Patients were randomized into the ropivacaine-epinephrine arm or control (normal saline) arm. From January 2014 to May 2016, 148 patients participated. The primary endpoint was site-specific pain, as measured by numeric rating scale 12 hours after surgery. The ropivacaine-epinephrine group exhibited significantly less swallowing difficulty (P = .008), anterior neck pain (P = .016), and right (P = .019) and left (P = .035) chest pain. Secondary endpoints were systolic (P = .402), diastolic (P = .827) blood pressure, and pulse rate (P = .397) after injection before incision and during surgery. The vital signs of the groups just after injection did not differ. During surgery, the ropivacaine-epinephrine patients had higher pulse rates (99 ± 13.3 vs 88 ± 16.1, P < .001) but within normal range. There were no adverse events such as postoperative nausea and vomiting. There was no significant difference in pain scores in either patient group between patients who underwent robotic or endoscopic interventions. BABA flap-site injection with ropivacaine and epinephrine mix before incision effectively and safely reduced postoperative pain. Future studies should focus on tailoring ropivacaine and epinephrine dosage for individuals.

Efficient theory of dipolar recoupling in–solid state nuclear magnetic resonance of rotating solids using Floquet-Magnus expansion: Application on BABA and C7 radiofrequency pulse sequences

PubMed Central

Reid, Alicia E.; Charpentier, Thibault

2013-01-01

This article describes the use of an alternative expansion scheme called Floquet-Magnus expansion (FME) to study the dynamics of spin system in solid-state NMR. The main tool used to describe the effect of time-dependent interactions in NMR is the average Hamiltonian theory (AHT). However, some NMR experiments, such as sample rotation and pulse crafting, seem to be more conveniently described using the Floquet theory (FT). Here, we present the first report highlighting the basics of the Floquet-Magnus expansion (FME) scheme and hint at its application on recoupling sequences that excite more efficiently double-quantum coherences, namely BABA and C7 radiofrequency pulse sequences. The use of Λn(t) functions available only in the FME scheme, allows the comparison of the efficiency of BABA and C7 sequences. PMID:22197191

Efficient theory of dipolar recoupling in solid-state nuclear magnetic resonance of rotating solids using Floquet-Magnus expansion: application on BABA and C7 radiofrequency pulse sequences.

PubMed

Mananga, Eugene S; Reid, Alicia E; Charpentier, Thibault

2012-02-01

This article describes the use of an alternative expansion scheme called Floquet-Magnus expansion (FME) to study the dynamics of spin system in solid-state NMR. The main tool used to describe the effect of time-dependent interactions in NMR is the average Hamiltonian theory (AHT). However, some NMR experiments, such as sample rotation and pulse crafting, seem to be more conveniently described using the Floquet theory (FT). Here, we present the first report highlighting the basics of the Floquet-Magnus expansion (FME) scheme and hint at its application on recoupling sequences that excite more efficiently double-quantum coherences, namely BABA and C7 radiofrequency pulse sequences. The use of Λ(n)(t) functions available only in the FME scheme, allows the comparison of the efficiency of BABA and C7 sequences. Copyright © 2011 Elsevier Inc. All rights reserved.

Sensitivity Analysis and Simulation of Theoretical Response of Ceramics to Strong Magnetic Fields

DTIC Science & Technology

2016-09-01

Weapons and Materials Research Directorate, ARL Approved for public release; distribution is unlimited. FOR OFFICIAL USE ONLY...Compounds. 2013;551:568–577. 4. Terada N, Suzuki HS, Suzuki TS, Kitazawa H, Sakka Y, Kaneko K, Metoki N. In situ neutron diffraction study of...TS, Kitazawa H, Sakka Y, Kaneko K, Metoki N. Neutron diffraction texture analysis for alpha-Al2O3 oriented by a high magnetic field and sintering

Induced resistance against the Asian citrus psyllid, Diaphorina citri, by β-aminobutyric acid in citrus.

PubMed

Tiwari, Siddharth; Meyer, Wendy L; Stelinski, Lukasz L

2013-10-01

β-Aminobutyric acid (BABA) is known to induce resistance to microbial pathogens, nematodes and insects in several host plant/pest systems. The present study was undertaken to determine whether a similar effect of BABA occurred against the Asian citrus psyllid, Diaphorina citri Kuwayama, in citrus. A 25 mM drench application of BABA significantly reduced the number of eggs/plant as compared with a water control, whereas 200 and 100 mM applications of BABA reduced the numbers of nymphs/plant and adults/plants, respectively. A 5 mM foliar application of BABA significantly reduced the number of adults but not eggs or nymphs when compared with a water control treatment. In addition, leaf-dip bioassays using various concentrations (25–500 mM) of BABA indicated no direct toxic effect on 2nd and 5th instar nymphs or adult D. citri. BABA-treated plants were characterized by significantly lower levels of iron, magnesium, phosphorus, sodium, sulfur and zinc as compared with control plants. The expression level of the PR-2 gene (β-1,3-glucanase) in BABA-treated plants that were also damaged by D. citri adult feeding was significantly higher than in plants exposed to BABA, D. citri feeding alone or control plants. Our results indicate the potential for using BABA as a systemic acquired resistance management tool for D. citri.

Preferred Orientation of Rare Earth (RE)-Doped Alumina Crystallites by an Applied Magnetic Field

DTIC Science & Technology

2016-06-01

Magnetic Field by Victoria L Blair, Raymond E Brennan, and Jane W Adams Weapons and Materials Research Directorate, ARL Carli A Moorehead...public release; distribution is unlimited. 16 13. Terada N, Suzuki HS, Suzuki TS, Kitazawa H, Sakka Y, Kaneko K, Metok N. In situ neutron diffraction...HS, Suzuki TS, Kitazawa H, Sakka Y, Kaneko K, Metoki N. Neutron diffraction texture analysis for alpha-Al2O3 oriented by high magnetic field and

Priming of the Arabidopsis pattern-triggered immunity response upon infection by necrotrophic Pectobacterium carotovorum bacteria.

PubMed

Po-Wen, Chen; Singh, Prashant; Zimmerli, Laurent

2013-01-01

Boosted responsiveness of plant cells to stress at the onset of pathogen- or chemically induced resistance is called priming. The chemical β-aminobutyric acid (BABA) enhances Arabidopsis thaliana resistance to hemibiotrophic bacteria through the priming of the salicylic acid (SA) defence response. Whether BABA increases Arabidopsis resistance to the necrotrophic bacterium Pectobacterium carotovorum ssp. carotovorum (Pcc) is not clear. In this work, we show that treatment with BABA protects Arabidopsis against the soft-rot pathogen Pcc. BABA did not prime the expression of the jasmonate/ethylene-responsive gene PLANT DEFENSIN 1.2 (PDF1.2), the up-regulation of which is usually associated with resistance to necrotrophic pathogens. Expression of the SA marker gene PATHOGENESIS RELATED 1 (PR1) on Pcc infection was primed by BABA treatment, but SA-defective mutants demonstrated a wild-type level of BABA-induced resistance against Pcc. BABA primed the expression of the pattern-triggered immunity (PTI)-responsive genes FLG22-INDUCED RECEPTOR-LIKE KINASE 1 (FRK1), ARABIDOPSIS NON-RACE SPECIFIC DISEASE RESISTANCE GENE (NDR1)/HAIRPIN-INDUCED GENE (HIN1)-LIKE 10 (NHL10) and CYTOCHROME P450, FAMILY 81 (CYP81F2) after inoculation with Pcc or after treatment with purified bacterial microbe-associated molecular patterns, such as flg22 or elf26. PTI-mediated callose deposition was also potentiated in BABA-treated Arabidopsis, and BABA boosted Arabidopsis stomatal immunity to Pcc. BABA treatment primed the PTI response in the SA-defective mutants SA induction deficient 2-1 (sid2-1) and phytoalexin deficient 4-1 (pad4-1). In addition, BABA priming was associated with open chromatin configurations in the promoter region of PTI marker genes. Our data indicate that BABA primes the PTI response upon necrotrophic bacterial infection and suggest a role for the PTI response in BABA-induced resistance. © 2012 THE AUTHORS. MOLECULAR PLANT PATHOLOGY © 2012 BSPP AND BLACKWELL PUBLISHING LTD.

β-Amino-n-butyric Acid Regulates Seedling Growth and Disease Resistance of Kimchi Cabbage

PubMed Central

Kim, Yeong Chae; Kim, Yeon Hwa; Lee, Young Hee; Lee, Sang Woo; Chae, Yun-Soek; Kang, Hyun-Kyung; Yun, Byung-Wook; Hong, Jeum Kyu

2013-01-01

Non-protein amino acid, β-amino-n-butyric acid (BABA), has been involved in diverse physiological processes including seedling growth, stress tolerance and disease resistance of many plant species. In the current study, treatment of kimchi cabbage seedlings with BABA significantly reduced primary root elongation and cotyledon development in a dose-dependent manner, which adverse effects were similar to the plant response to exogenous abscisic acid (ABA) application. BABA was synergistically contributing ABA-induced growth arrest during the early seedling development. Kimchi cabbage leaves were highly damaged and seedling growth was delayed by foliar spraying with high concentrations of BABA (10 to 20 mM). BABA played roles differentially in in vitro fungal conidial germination, mycelial growth and conidation of necrotroph Alternaria brassicicola causing black spot disease and hemibiotroph Colletotrichum higginsianum causing anthracnose. Pretreatment with BABA conferred induced resistance of the kimchi cabbage against challenges by the two different classes of fungal pathogens in a dose-dependent manner. These results suggest that BABA is involved in plant development, fungal development as well as induced fungal disease resistance of kimchi cabbage plant. PMID:25288957

β-aminobutyric acid mediated drought stress alleviation in maize (Zea mays L.).

PubMed

Shaw, Arun K; Bhardwaj, Pardeep K; Ghosh, Supriya; Roy, Sankhajit; Saha, Suman; Sherpa, Ang R; Saha, Samir K; Hossain, Zahed

2016-02-01

The present study highlights the role of β-aminobutyric acid (BABA) in alleviating drought stress effects in maize (Zea mays L.). Chemical priming was imposed by pretreating 1-week-old plants with 600 μM BABA prior to applying drought stress. Specific activities of key antioxidant enzymes and metabolites (ascorbate and glutathione) levels of ascorbate-glutathione cycle were studied to unravel the priming-induced modulation of plant defense system. Furthermore, changes in endogenous ABA and JA concentrations as well as mRNA expressions of key genes involved in their respective biosynthesis pathways were monitored in BABA-primed (BABA+) and non-primed (BABA-) leaves of drought-challenged plants to better understand the mechanistic insights into the BABA-induced hormonal regulation of plant response to water-deficit stress. Accelerated stomatal closure, high relative water content, and less membrane damage were observed in BABA-primed leaves under water-deficit condition. Elevated APX and SOD activity in non-primed leaves found to be insufficient to scavenge all H2O2 and O2 (·-) resulting in oxidative burst as evident after histochemical staining with NBT and DAB. A higher proline accumulation in non-primed leaves also does not give much protection against drought stress. Increased GR activity supported with the enhanced mRNA and protein expressions might help the BABA-primed plants to maintain a high GSH pool essential for sustaining balanced redox status to counter drought-induced oxidative stress damages. Hormonal analysis suggests that in maize, BABA-potentiated drought tolerance is primarily mediated through JA-dependent pathway by the activation of antioxidant defense systems while ABA biosynthesis pathway also plays an important role in fine-tuning of drought stress response.

DL-β-aminobutyric acid-induced resistance in soybean against Aphis glycines Matsumura (Hemiptera: Aphididae).

PubMed

Zhong, Yunpeng; Wang, Biao; Yan, Junhui; Cheng, Linjing; Yao, Luming; Xiao, Liang; Wu, Tianlong

2014-01-01

Priming can improve plant innate capability to deal with the stresses caused by both biotic and abiotic factors. In this study, the effect of DL-β-amino-n-butyric acid (BABA) against Aphis glycines Matsumura, the soybean aphid (SA) was evaluated. We found that 25 mM BABA as a root drench had minimal adverse impact on plant growth and also efficiently protected soybean from SA infestation. In both choice and non-choice tests, SA number was significantly decreased to a low level in soybean seedlings drenched with 25 mM BABA compared to the control counterparts. BABA treatment resulted in a significant increase in the activities of several defense enzymes, such as phenylalanine ammonia-lyase (PAL), peroxidase (POX), polyphenol oxidase (PPO), chitinase (CHI), and β-1, 3-glucanase (GLU) in soybean seedlings attacked by aphid. Meanwhile, the induction of 15 defense-related genes by aphid, such as AOS, CHS, MMP2, NPR1-1, NPR1-2, and PR genes, were significantly augmented in BABA-treated soybean seedlings. Our study suggest that BABA application is a promising way to enhance soybean resistance against SA.

The Life of the Mind: A Tribute to Three Professors.

ERIC Educational Resources Information Center

Yamamoto, Kaoru

2000-01-01

This speech by a distinguished scholar in educational psychology recounts, with appreciation, his educational experiences under three distinguished professors: Toshio Maki, his undergraduate thesis supervisor in Japan; E. Paul Torrance, the prominent educational psychologist; and C. Gilbert Wrenn, his doctoral advisor. (DB)

Induction of Direct or Priming Resistance against Botrytis cinerea in Strawberries by β-Aminobutyric Acid and Their Effects on Sucrose Metabolism.

PubMed

Wang, Kaituo; Liao, Yunxia; Xiong, Qi; Kan, Jianquan; Cao, Shifeng; Zheng, Yonghua

2016-07-27

The specific forms of disease resistance induced by β-aminobutyric acid (BABA) and their impacts on sucrose metabolism of postharvest strawberries were determined in the present research. Treatment with 10-500 mmol L(-1) BABA inhibited the Botrytis cinerea infection, possibly directly by suppressing the fungus growth and indirectly by triggering disease resistance. Moreover, BABA-induced resistance against B. cinerea infection in strawberries was associated with either one of two mechanisms, depending upon the concentration used: BABA at concentrations higher than 100 mmol L(-1) directly induced the defense response, including a H2O2 burst, modulation of the expression of PR genes, including FaPR1, FaChi3, Faβglu, and FaPAL, and increased activities of chitinase, β-1,3-glucanase, and PAL, whereas BABA at 10 mmol L(-1) activated a priming response because the BABA-treated fruits exhibited an increased capacity to express molecular defense only when the fruits were inoculated with B. cinerea. Activation of the priming defense appeared almost as effective against B. cinerea as inducing direct defense. However, the primed strawberries maintained higher activities of SS synthesis and SPS and SPP enzymes) and lower level of SS cleavage during the incubation; these activities contributed to higher sucrose, fructose, and glucose contents, sweetness index, and sensory scores compared to fruits exhibiting the direct defense. Thus, it is plausible that the priming defense, which can be activated by BABA at relatively low concentrations, represents an optimal strategy for combining the advantages of enhanced disease protection and soluble sugar accumulation.

vacA s1m1 genotype and cagA EPIYA-ABC pattern are predominant among Helicobacter pylori strains isolated from Mexican patients with chronic gastritis.

PubMed

Atrisco-Morales, Josefina; Martínez-Santos, Verónica I; Román-Román, Adolfo; Alarcón-Millán, Judit; De Sampedro-Reyes, José; Cruz-Del Carmen, Iván; Martínez-Carrillo, Dinorah N; Fernández-Tilapa, Gloria

2018-03-01

Virulent genotypes of Helicobacter pylori vacA s1m1/cagA + /babA2 + have been associated with severe gastric diseases. VacA, CagA and BabA are polymorphic proteins, and their association with the disease is allele-dependent. The aims of this work were: (i) to determine the prevalence of H. pylori by type of chronic gastritis; (ii) to describe the frequency of cagA, babA2 and vacA genotypes in strains from patients with different types of chronic gastritis; (iii) to characterize the variable region of cagA alleles. A total of 164 patients with chronic gastritis were studied. Altogether, 50 H. pylori strains were isolated, and the status of cagA, babA2 and vacA genotypes was examined by PCR. cagA EPIYA segment identification was performed using PCR and sequencing of cagA fragments of six randomly selected strains.Results/Key findings. The overall prevalence of H. pylori was 30.5 %. Eighty percent of the isolated strains were vacA s1m1, and the cagA and babA2 genes were detected in 74 and 32 % of the strains, respectively. The most frequent genotypes were vacA s1m1/cagA + /babA2 - and vacA s1m1/cagA + /babA2 + , with 40 % (20/50) and 28 % (14/50), respectively. In cagA + , the most frequent EPIYA motif was -ABC (78.4 %), and EPIYA-ABCC and -ABCCC motifs were found in 10.8 % of the strains. A modified EPIYT-B motif was found in 66.6 % of the sequenced strains. H. pylori strains carrying vacA s1m1, cagA + and babA2 - genotypes were the most prevalent in patients with chronic gastritis from the south of Mexico. In the cagA + strains, the EPIYA-ABC motif was the most common.

Japanese Ground Forces Order of Battle Bulletins (7 April - 2 June 1945) Part 1

DTIC Science & Technology

1945-01-01

Narumi (49) ISHII Mas’ayoshi (121) . ( ISHII Shiro (99) ISHIKAWA Megumu (—). 10/41 8/59 INAMURA Toyojiro (60) 12/40 INOUE Fumio (100) 8/48 8/41...MGHITA Ncrimasa (~) ,• MORXTAMA Tokuaitsu (131) MQTOlzttel Kaoru {116) MOTOYOSHI* KeisiSr6iilbb)3 a’ MUKAI Xinjiro (95)-^\\s) :- HURAJI Toshio 144

Comparison of Bilateral Axillo-Breast Approach Robotic Thyroidectomy with Open Thyroidectomy for Graves' Disease.

PubMed

Kwon, Hyungju; Yi, Jin Wook; Song, Ra-Yeong; Chai, Young Jun; Kim, Su-jin; Choi, June Young; Lee, Kyu Eun

2016-03-01

There is an ongoing debate about whether robotic thyroidectomy (RT) is appropriate for Graves' disease. The aim of this study was to compare the safety of bilateral axillo-breast approach (BABA) RT with that of open thyroidectomy (OT) in patients with Graves' disease. From January 2008 to June 2014, 189 (44 BABA RT and 145 OT) patients underwent total thyroidectomy for Graves' disease. Recurrence of Graves' disease, intraoperative blood loss, hospital stay, and complication rates including recurrent laryngeal nerve (RLN) palsy and hypoparathyroidism were analyzed between BABA RT and OT groups, after propensity score matching according to age, gender, body mass index, surgical indication, the extent of operation, excised thyroid weight, and follow-up period. No patient experienced recurrence of Graves' disease after median follow-up of 35.0 months. Intraoperative blood loss (151.8 ± 165.4 mL vs. 134.5 ± 75.4 mL; p = 0.534) and hospital stay (3.4 ± 0.7 day vs. 3.3 ± 0.7 day; p = 0.564) were not different between BABA RT and OT groups. Complication rates including transient RLN palsy (11.4 vs. 11.4%; p = 1.000), transient hypoparathyroidism (18.2 vs. 20.5%; p = 0.787), permanent RLN palsy (0 vs. 2.3%; p = 0.315), and permanent hypoparathyroidism (2.3 vs. 2.3%; p = 1.000) were also comparable between groups. BABA RT for Graves' disease showed comparable surgical completeness and complications to conventional OT. BABA RT can be recommended as an alternative surgical option for patients with Graves' disease who are concerned about cosmesis.

Asian-Pacific Papers. Occasional Papers Number 10.

ERIC Educational Resources Information Center

McCarthy, Brian, Ed.

Sixteen papers are presented. Topics covered include language teaching, discourse analysis, code switching, phonetics, language and cultural identity, and descriptive and comparative studies. All presenters were from the Asia-Pacific area of the world. Papers include: "The Baba Malay Lexicon: Hokkien Loanwords in Baba Malay" (Anne…

Proteomic analysis of drought resistance in crabapple seedlings primed by the xenobiotic Beta-aminobutyric acid

USDA-ARS?s Scientific Manuscript database

In a variety of annual crops and model plants, the xenobiotic DL-Beta-aminobutyric acid (BABA) has been shown to enhance disease resistance and increase salt, drought and thermotolerance. BABA does not activate stress genes directly, but sensitizes plants to respond more quickly and strongly to biot...

Proteomic analysis of B-aminobutyric acid priming and aba-induction of drought resistance in crabapple (Malus pumila): effect on general metabolism, the phenylpropanoid pathway and cell wall enzymes

USDA-ARS?s Scientific Manuscript database

In a variety of annual crops and model plants, the xenobiotic compound, DL-beta-aminobutyric acid (BABA), has been shown to enhance disease resistance and increase salt, drought, and thermotolerance. BABA does not activate stress genes directly but rather sensitizes plants to respond more quickly a...

JPRS Report, Science & Technology, Japan

DTIC Science & Technology

1990-10-11

REPORT OF JAMSTEC NO. 23, Mar 90] ........ 10 Microbial Study in Deep Sea Sediments-Vertical Distribution and Respiration Rate [ Shunji Sukizaki, et al...System by Kenji Nonami, Toshio Distribution and Respiration Rate by Shunji Sukizaki, Tsuchiya, Katsuro Minani, Toshiyuki Nakanishi, Yasu- Takeshi Naganuma...ichi Fukuda, Hitoshi in English Mar 90 pp 1-2 Yamaguchi, Akira Aoki ............................................. 197 [Article by Shunji Sukizaki

Resolved Sideband Spectroscopy for the Detection of Weak Optical Transitions

DTIC Science & Technology

2013-08-01

Lett. 81, 317 (1998). [12] T. Baba and I. Waki , “Cooling and Mass-Analysis of Molecules Using Laser-Cooled Atoms,” Jpn. J. Appl. Phys 35, L1134 (1996...fermions,” Phys. Rev. A: At. Mol. Opt. Phys. 65, 043601 (2002). [26] T. Baba and I. Waki , “Spectral shape of in situ mass spectra of sympathetically cooled

Asymmetric chemical reactions by polarized quantum beams

NASA Astrophysics Data System (ADS)

Takahashi, Jun-Ichi; Kobayashi, Kensei

One of the most attractive hypothesis for the origin of homochirality in terrestrial bio-organic compounds (L-amino acid and D-sugar dominant) is nominated as "Cosmic Scenario"; a chiral impulse from asymmetric excitation sources in space triggered asymmetric reactions on the surfaces of such space materials as meteorites or interstellar dusts prior to the existence of terrestrial life. 1) Effective asymmetric excitation sources in space are proposed as polarized quantum beams, such as circularly polarized light and spin polarized electrons. Circularly polarized light is emitted as synchrotron radiation from tightly captured electrons by intense magnetic field around neutron stars. In this case, either left-or right-handed polarized light can be observed depending on the direction of observation. On the other hand, spin polarized electrons is emitted as beta-ray in beta decay from radioactive nuclei or neutron fireballs in supernova explosion. 2) The spin of beta-ray electrons is longitudinally polarized due to parity non-conservation in the weak interaction. The helicity (the the projection of the spin onto the direction of kinetic momentum) of beta-ray electrons is universally negative (left-handed). For the purpose of verifying the asymmetric structure emergence in bio-organic compounds by polarized quantum beams, we are now carrying out laboratory simulations using circularly polarized light from synchrotron radiation facility or spin polarized electron beam from beta-ray radiation source. 3,4) The target samples are solid film or aqueous solution of racemic amino acids. 1) K.Kobayashi, K.Kaneko, J.Takahashi, Y.Takano, in Astrobiology: from simple molecules to primitive life; Ed. V.Basiuk; American Scientific Publisher: Valencia, 2008. 2) G.A.Gusev, T.Saito, V.A.Tsarev, A.V.Uryson, Origins Life Evol. Biosphere. 37, 259 (2007). 3) J.Takahashi, H.Shinojima, M.Seyama, Y.Ueno, T.Kaneko, K.Kobayashi, H.Mita, M.Adachi, M.Hosaka, M.Katoh, Int. J. Mol. Sci. 10, 3044

β-Aminobutyric acid increases abscisic acid accumulation and desiccation tolerance and decreases water use but fails to improve grain yield in two spring wheat cultivars under soil drying.

PubMed

Du, Yan-Lei; Wang, Zhen-Yu; Fan, Jing-Wei; Turner, Neil C; Wang, Tao; Li, Feng-Min

2012-08-01

A pot experiment was conducted to investigate the effect of the non-protein amino acid, β-aminobutyric acid (BABA), on the homeostasis between reactive oxygen species (ROS) and antioxidant defence during progressive soil drying, and its relationship with the accumulation of abscisic acid (ABA), water use, grain yield, and desiccation tolerance in two spring wheat (Triticum aestivum L.) cultivars released in different decades and with different yields under drought. Drenching the soil with 100 µM BABA increased drought-induced ABA production, leading to a decrease in the lethal leaf water potential (Ψ) used to measure desiccation tolerance, decreased water use, and increased water use efficiency for grain (WUEG) under moderate water stress. In addition, at severe water stress levels, drenching the soil with BABA reduced ROS production, increased antioxidant enzyme activity, and reduced the oxidative damage to lipid membranes. The data suggest that the addition of BABA triggers ABA accumulation that acts as a non-hydraulic root signal, thereby closing stomata, and reducing water use at moderate stress levels, and also reduces the production of ROS and increases the antioxidant defence enzymes at severe stress levels, thus increasing the desiccation tolerance. However, BABA treatment had no effect on grain yield of wheat when water availability was limited. The results suggest that there are ways of effectively priming the pre-existing defence pathways, in addition to genetic means, to improve the desiccation tolerance and WUEG of wheat.

Galatheid squat lobster species from Chinese waters

NASA Astrophysics Data System (ADS)

Dong, Chao; Li, Xinzheng

2013-11-01

Five galatheid squat lobster species belonging to four genera of two galatheid families are reported for the first time from Chinese waters, namely Lauriea simulata Macpherson and Robainas-Barcia, 2013, Phylladiorhynchus ikedai (Miyake and Baba, 1965), Phylladiorhynchus integrirostris (Dana, 1852), Babamunida sp., and Raymunida elegantissima (de Man, 1902). The genera Lauriea Baba, 1971 and Babamunida Cabezas, Macpherson, and Machordom, 2008 have not previously been recorded from Chinese waters.

New species and new records of deepwater munidid squat lobsters from north-western Australia: Onconida, Bathymunida, Crosnierita, Plesionida and Torbenella.

PubMed

Ahyong, Shane T; Taylor, Joanne; Mccallum, Anna W

2013-11-04

Seven species of Munididae are reported from the continental margin of north-western Australia. Three species are new to science: Crosnierita adela sp. nov., Onconida ariel sp. nov. and Plesionida aurelia sp. nov., each presently known only from Western Australia. Four species are reported for the first time from Australian waters, Bathymunida balssi Van Dam, 1838, Bathymunida dissimilis Baba & de Saint Laurent, 1996, Crosnierita yante (Macpherson, 1994) and Torbenella orbis (Baba, 2005). Keys to the world species of the genera represented are provided.

Simple Model of a Photoacoustic System as a CR Circuit

ERIC Educational Resources Information Center

Fukuhara, Akiko; Kaneko, Fumitoshi; Ogawa, Naohisa

2012-01-01

We introduce the photoacoustic educational system (PAES), by which we can identify which gas causes the greenhouse effect in a classroom (Kaneko "et al" 2010 "J. Chem. Educ." 87 202-4). PAES is an experimental system in which a pulse of infrared (IR) is absorbed into gas as internal energy, an oscillation of pressure (sound) appears, and then we…

Screening natural libraries of human milk oligosaccharides against lectins using CaR-ESI-MS.

PubMed

El-Hawiet, Amr; Chen, Yajie; Shams-Ud-Doha, Km; Kitova, Elena N; Kitov, Pavel I; Bode, Lars; Hage, Naim; Falcone, Franco H; Klassen, John S

2018-01-15

Human milk oligosaccharides (HMOs) afford many health benefits to breast-fed infants, such as protection against infection and regulation of the immune system, through the formation of non-covalent interactions with protein receptors. However, the molecular details of these interactions are poorly understood. Here, we describe the application of catch-and-release electrospray ionization mass spectrometry (CaR-ESI-MS) for screening natural libraries of HMOs against lectins. The HMOs in the libraries were first identified based on molecular weights (MWs), ion mobility separation arrival times (IMS-ATs) and collision-induced dissociation (CID) fingerprints of their deprotonated anions. The libraries were then screened against lectins and the ligands identified from the MWs, IMS-ATs and CID fingerprints of HMOs released from the lectin in the gas phase. To demonstrate the assay, four fractions, extracted from pooled human milk and containing ≥35 different HMOs, were screened against a C-terminal fragment of human galectin-3 (hGal-3C), for which the HMOs specificities have been previously investigated, and a fragment of the blood group antigen-binding adhesin (BabA) from Helicobacter pylori, for which the HMO specificities have not been previously established. The structures of twenty-one ligands, corresponding to both neutral and acidic HMOs, of hGal-3C were identified; all twenty-one were previously shown to be ligands for this lectin. The presence of HMO ligands at six other MWs was also ascertained. Application of the assay to BabA revealed nineteen specific HMO structures that are recognized by the protein and HMO ligands at two other MWs. Notably, it was found that BabA exhibits broad specificity for HMOs, and recognizes both neutral HMOs, including non-fucosylated ones, and acidic HMOs. The results of competitive binding experiments indicate that HMOs can interact with BabA at previously unknown binding sites. The affinities of eight purified HMOs for BabA were

vacA s1m1 genotype and cagA EPIYA-ABC pattern are predominant among Helicobacter pylori strains isolated from Mexican patients with chronic gastritis

PubMed Central

Atrisco-Morales, Josefina; Martínez-Santos, Verónica I.; Román-Román, Adolfo; Alarcón-Millán, Judit; De Sampedro-Reyes, José; Cruz-del Carmen, Iván; Martínez-Carrillo, Dinorah N.; Fernández-Tilapa, Gloria

2018-01-01

Purpose Virulent genotypes of Helicobacter pylori vacA s1m1/cagA+/babA2+ have been associated with severe gastric diseases. VacA, CagA and BabA are polymorphic proteins, and their association with the disease is allele-dependent. The aims of this work were: (i) to determine the prevalence of H. pylori by type of chronic gastritis; (ii) to describe the frequency of cagA, babA2 and vacA genotypes in strains from patients with different types of chronic gastritis; (iii) to characterize the variable region of cagA alleles. Methodology A total of 164 patients with chronic gastritis were studied. Altogether, 50 H. pylori strains were isolated, and the status of cagA, babA2 and vacA genotypes was examined by PCR. cagA EPIYA segment identification was performed using PCR and sequencing of cagA fragments of six randomly selected strains. Results/Key findings The overall prevalence of H. pylori was 30.5 %. Eighty percent of the isolated strains were vacA s1m1, and the cagA and babA2 genes were detected in 74 and 32 % of the strains, respectively. The most frequent genotypes were vacA s1m1/cagA+/babA2- and vacA s1m1/cagA+/babA2+, with 40 % (20/50) and 28 % (14/50), respectively. In cagA+, the most frequent EPIYA motif was -ABC (78.4 %), and EPIYA-ABCC and -ABCCC motifs were found in 10.8 % of the strains. A modified EPIYT-B motif was found in 66.6 % of the sequenced strains. Conclusion H. pylori strains carrying vacA s1m1, cagA+ and babA2- genotypes were the most prevalent in patients with chronic gastritis from the south of Mexico. In the cagA+ strains, the EPIYA-ABC motif was the most common. PMID:29458667

Diversity of Helicobacter pylori genotypes in Iranian patients with different gastroduodenal disorders

PubMed Central

Vaziri, Farzam; Najar Peerayeh, Shahin; Alebouyeh, Masoud; Mirzaei, Tabassom; Yamaoka, Yoshio; Molaei, Mahsa; Maghsoudi, Nader; Zali, Mohammad Reza

2013-01-01

AIM: To investigate the diversity of Helicobacter pylori (H. pylori) genotypes and correlations with disease outcomes in an Iranian population with different gastroduodenal disorders. METHODS: Isolates of H. pylori from patients with different gastroduodenal disorders were analyzed after culture and identification by phenotypic and genotypic methods. Genomic DNA was extracted with the QIAamp DNA mini kit (Qiagen, Germany). After DNA extraction, genotyping was done for cagA, vacA (s and m regions), iceA (iceA1, iceA2) and babA with specific primers for each allele using polymerase chain reaction (PCR). All patients’ pathologic and clinical data and their relation with known genotypes were analyzed by using SPSS version 19.0 software. χ2 test and Fisher’s exact test were used to assess relationships between categorical variables. The level of statistical significance was set at P < 0.05. RESULTS: A total of 71 isolates from 177 patients with different gastroduodenal disorders were obtained. Based on analysis of the cagA gene (positive or negative), vacA s-region (s1 or s2), vacA m-region (m1 or m2), iceA allelic type (iceA1 and iceA2) and babA gene (positive or negative), twenty different genotypic combinations were recognized. The prevalence of cagA, vacA s1, vacA s2, vacA m1, vacA m2, iceA1, iceA2, iceA1+iceA2 and babA were 62%, 78.9%, 19.7%, 21.1%, 78.9%, 15.5%, 22.5%, 40.8% and 95.8%, respectively. Interestingly, evaluation of PCR results for cagA in 6 patients showed simultaneous existence of cagA variants according to their size diversities that proposed mixed infection in these patients. The most prevalent genotype in cagA-positive isolates was cagA+/vacAs1m2/iceA1+A2/babA+ and in cagA-negative isolates was cagA-/vacAs1m2/iceA-/babA+. There were no relationships between the studied genes and histopathological findings (H. pylori density, neutrophil activity, lymphoid aggregation in lamina propria and glandular atrophy). The strains which carry cagA, vac

JPRS Report. Science & Technology: Japan.

DTIC Science & Technology

1988-12-09

Molding Technology [Takashi Kasai , Akihiko Hirota; KIKAI TO KOGU, May 88] 106 Injection Molding Technology [Toshiyuki Iwahashi; KIKAI TO KOGU, May 88...Development Shu Isa -Planning Office Fumio Sato —Control Office Shizuka Kudo - Patent Office Taro Inoue —Technical Information Office Takeshi...the possibility that a more serious situation could occur. Fumio Kaneko, who is in charge of the marine sector, joined the company in 1971 after

Novel Molecular Interactions and Biological Functions of the Neurofibromatosis 2 Tumor Suppressor Protein, Merlin

DTIC Science & Technology

2008-08-01

OF RESPONSIBLE PERSON USAMRMC a. REPORT U b . ABSTRACT U c. THIS PAGE U UU 92 19b. TELEPHONE NUMBER (include area code...tyrosine 477 similarly to Src. However, the C-terminus of ezrin contains also another site, tyrosine 482 (Fig. 18). The result indicates that...inhibition of a merlin phosphatase. Nature , 442, 576-579. 20 Kaneko T, Yamashima T, Tohma Y, Nomura M, Imajoh-Ohmi S, Saido TC, Nakao M, Saya H

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thorell, Kaisa; Hosseini, Shaghayegh; Palacios Gonzales, Reyna Victoria Palacios

In this study, Helicobacter pylori (H. pylori) is one of the most common bacterial infections in humans and this infection can lead to gastric ulcers and gastric cancer. H. pylori is one of the most genetically variable human pathogens and the ability of the bacterium to bind to the host epithelium as well as the presence of different virulence factors and genetic variants within these genes have been associated with disease severity. Nicaragua has particularly high gastric cancer incidence and we therefore studied Nicaraguan clinical H. pylori isolates for factors that could contribute to cancer risk. The complete genomes ofmore » fifty-two Nicaraguan H. pylorii isolates were sequenced and assembled de novo, and phylogenetic and virulence factor analyses were performed. The Nicaraguan isolates showed phylogenetic relationship with West African isolates in whole-genome sequence comparisons and with Western and urban South-and Central American isolates using MLSA (Multi-locus sequence analysis). A majority, 77 % of the isolates carried the cancer-associated virulence gene cagA and also the s1/i1/m1 vacuolating cytotoxin, vacA allele combination, which is linked to increased severity of disease. Specifically, we also found that Nicaraguan isolates have a blood group-binding adhesin (BabA) variant highly similar to previously reported BabA sequences from Latin America, including from isolates belonging to other phylogenetic groups. These BabA sequences were found to be under positive selection at several amino acid positions that differed from the global collection of isolates. In conclusion, the discovery of a Latin American BabA variant, independent of overall phylogenetic background, suggests hitherto unknown host or environmental factors within the Latin American population giving H. pylori isolates carrying this adhesin variant a selective advantage, which could affect pathogenesis and risk for sequelae through specific adherence properties.« less

Helicobacter pylori bab characterization in clinical isolates from Bhutan, Myanmar, Nepal and Bangladesh.

PubMed

Ansari, Shamshul; Kabamba, Evariste Tshibangu; Shrestha, Pradeep Krishna; Aftab, Hafeza; Myint, Thein; Tshering, Lotay; Sharma, Rabi Prakash; Ni, Nwe; Aye, Than Than; Subsomwong, Phawinee; Uchida, Tomohisa; Ratanachu-Ek, Thawee; Vilaichone, Ratha-Korn; Mahachai, Varocha; Matsumoto, Takashi; Akada, Junko; Yamaoka, Yoshio

2017-01-01

Helicobacter pylori BabA is an important outer membrane protein that involves in the attachment to the gastric mucosa and enhances the virulence property of the bacterium. This study was aimed to characterize the bab genotypes, to evaluate its association with cagA, vacA and clinical diseases as well as degree of gastric inflammation. H. pylori isolates from four countries were subjected for the characterization of bab. The locus specific forward and bab specific reverse primers were used to get the specific products by PCR, which could distinguish the three locus (A, B and C). The histological activities were evaluated according to the Updated Sydney system. In patients from high risk countries (Bhutan and Myanmar) relatively higher frequencies of strains with babA-positivity (91.8% and 90.7%, respectively), babA at locus A (98% and 91.2%, respectively) and with single babA (96.8% and 91.2%, respectively) were found. Strains with two loci occupied were the most prevalent in Bhutan (84.6%), Myanmar (74.7%), Nepal (58.3%) and Bangladesh (56.9%). The genotype babA at locus A/babB at locus B/bab-negative at locus C (babA/babB/-) was the most common genotype isolated from Bhutan (82.7%), Myanmar (58.7%), Nepal (32%) and Bangladesh (31.4%) among all genotypes assessed. This genotype was also associated with the peptic ulcer disease (P = 0.013) when compared to gastritis. babA-positive characteristics and the genotype babA/babB/- exhibited the enhanced histological activities. The higher prevalence of virulence associated babA-positive characteristics and enhanced histological activities in Bhutan than in Myanmar, Nepal and Bangladesh might partly explain why the peoples in Bhutan are at higher risk for developing severe gastric complications.

Helicobacter pylori bab characterization in clinical isolates from Bhutan, Myanmar, Nepal and Bangladesh

PubMed Central

Ansari, Shamshul; Kabamba, Evariste Tshibangu; Shrestha, Pradeep Krishna; Aftab, Hafeza; Myint, Thein; Tshering, Lotay; Sharma, Rabi Prakash; Ni, Nwe; Aye, Than Than; Subsomwong, Phawinee; Uchida, Tomohisa; Ratanachu-ek, Thawee; Vilaichone, Ratha-korn; Mahachai, Varocha; Matsumoto, Takashi; Akada, Junko

2017-01-01

Background Helicobacter pylori BabA is an important outer membrane protein that involves in the attachment to the gastric mucosa and enhances the virulence property of the bacterium. This study was aimed to characterize the bab genotypes, to evaluate its association with cagA, vacA and clinical diseases as well as degree of gastric inflammation. Methods H. pylori isolates from four countries were subjected for the characterization of bab. The locus specific forward and bab specific reverse primers were used to get the specific products by PCR, which could distinguish the three locus (A, B and C). The histological activities were evaluated according to the Updated Sydney system. Result In patients from high risk countries (Bhutan and Myanmar) relatively higher frequencies of strains with babA-positivity (91.8% and 90.7%, respectively), babA at locus A (98% and 91.2%, respectively) and with single babA (96.8% and 91.2%, respectively) were found. Strains with two loci occupied were the most prevalent in Bhutan (84.6%), Myanmar (74.7%), Nepal (58.3%) and Bangladesh (56.9%). The genotype babA at locus A/babB at locus B/bab-negative at locus C (babA/babB/-) was the most common genotype isolated from Bhutan (82.7%), Myanmar (58.7%), Nepal (32%) and Bangladesh (31.4%) among all genotypes assessed. This genotype was also associated with the peptic ulcer disease (P = 0.013) when compared to gastritis. babA-positive characteristics and the genotype babA/babB/- exhibited the enhanced histological activities. Conclusions The higher prevalence of virulence associated babA-positive characteristics and enhanced histological activities in Bhutan than in Myanmar, Nepal and Bangladesh might partly explain why the peoples in Bhutan are at higher risk for developing severe gastric complications. PMID:29107979

Quantum changes in Helicobacter pylori gene expression accompany host-adaptation

PubMed Central

Wise, Michael J.; Khosravi, Yalda; Seow, Shih-Wee; Amoyo, Arlaine A.; Pettersson, Sven; Peters, Fanny; Tay, Chin-Yen; Perkins, Timothy T.; Loke, Mun-Fai; Marshall, Barry J.; Vadivelu, Jamuna

2017-01-01

Abstract Helicobacter pylori is a highly successful gastric pathogen. High genomic plasticity allows its adaptation to changing host environments. Complete genomes of H. pylori clinical isolate UM032 and its mice-adapted serial derivatives 298 and 299, generated using both PacBio RS and Illumina MiSeq sequencing technologies, were compared to identify novel elements responsible for host-adaptation. The acquisition of a jhp0562-like allele, which encodes for a galactosyltransferase, was identified in the mice-adapted strains. Our analysis implies a new β-1,4-galactosyltransferase role for this enzyme, essential for Ley antigen expression. Intragenomic recombination between babA and babB genes was also observed. Further, we expanded on the list of candidate genes whose expression patterns have been mediated by upstream homopolymer-length alterations to facilitate host adaption. Importantly, greater than four-fold reduction of mRNA levels was demonstrated in five genes. Among the down-regulated genes, three encode for outer membrane proteins, including BabA, BabB and HopD. As expected, a substantial reduction in BabA protein abundance was detected in mice-adapted strains 298 and 299 via Western analysis. Our results suggest that the expression of Ley antigen and reduced outer membrane protein expressions may facilitate H. pylori colonisation of mouse gastric epithelium. PMID:27803027

7 CFR 51.888 - Maturity requirements.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., Standardization Section, Room 2065-S, 14th and Independence Avenue, Washington, DC 20250 or at the National....5 Cardinal, Emperor, Perlette, Ribier, Olivette Blanche, Rish Baba, Red Malaga, and similar...

7 CFR 51.888 - Maturity requirements.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., Standardization Section, Room 2065-S, 14th and Independence Avenue, Washington, DC 20250 or at the National....5 Cardinal, Emperor, Perlette, Ribier, Olivette Blanche, Rish Baba, Red Malaga, and similar...

47 CFR 90.548 - Interoperability Technical Standards.

Code of Federal Regulations, 2012 CFR

2012-10-01

... Industry Association, ANSI/TIA/EIA-102.BABA-1998. (2) Transmitters designed for data transmission shall... (see § 90.531) shall conform to the following technical standards: (1) Transmitters designed for voice...

7 CFR 51.888 - Maturity requirements.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Section, Room 2065-S, 14th and Independence Avenue, Washington, DC 20250 or at the National Archives and... Cardinal, Emperor, Perlette, Ribier, Olivette Blanche, Rish Baba, Red Malaga, and similar varieties 15.5 (1...

7 CFR 51.888 - Maturity requirements.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Section, Room 2065-S, 14th and Independence Avenue, Washington, DC 20250 or at the National Archives and... Cardinal, Emperor, Perlette, Ribier, Olivette Blanche, Rish Baba, Red Malaga, and similar varieties 15.5 (1...

7 CFR 51.888 - Maturity requirements.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Section, Room 2065-S, 14th and Independence Avenue, Washington, DC 20250 or at the National Archives and... Cardinal, Emperor, Perlette, Ribier, Olivette Blanche, Rish Baba, Red Malaga, and similar varieties 15.5 (1...

Gaussian and linear deconvolution of LC-MS/MS chromatograms of the eight aminobutyric acid isomers

PubMed Central

Vemula, Harika; Kitase, Yukiko; Ayon, Navid J.; Bonewald, Lynda; Gutheil, William G.

2016-01-01

Isomeric molecules present a challenge for analytical resolution and quantification, even with MS-based detection. The eight-aminobutyric acid (ABA) isomers are of interest for their various biological activities, particularly γ-aminobutyric acid (GABA) and the d- and l-isomers of β-aminoisobutyric acid (β-AIBA; BAIBA). This study aimed to investigate LC-MS/MS-based resolution of these ABA isomers as their Marfey's (Mar) reagent derivatives. HPLC was able to separate three Mar-ABA isomers l-β-ABA (l-BABA), and l- and d-α-ABA (AABA) completely, with three isomers (GABA, and d/l-BAIBA) in one chromatographic cluster, and two isomers (α-AIBA (AAIBA) and d-BABA) in a second cluster. Partially separated cluster components were deconvoluted using Gaussian peak fitting except for GABA and d-BAIBA. MS/MS detection of Marfey's derivatized ABA isomers provided six MS/MS fragments, with substantially different intensity profiles between structural isomers. This allowed linear deconvolution of ABA isomer peaks. Combining HPLC separation with linear and Gaussian deconvolution allowed resolution of all eight ABA isomers. Application to human serum found a substantial level of l-AABA (13 μM), an intermediate level of l-BAIBA (0.8 μM), and low but detectable levels (<0.2 μM) of GABA, l-BABA, AAIBA, d-BAIBA, and d-AABA. This approach should be useful for LC-MS/MS deconvolution of other challenging groups of isomeric molecules. PMID:27771391

Partnerships in Education. A Collection of Papers Presentation at the International Community Education Association (ICEA) Conference (1st, Melbourne, Australia, September 26-29, 1988).

ERIC Educational Resources Information Center

Townsend, Tony, Ed.; Cowdell, Jennie, Ed.

The following papers, panel discussion, summaries, and comments are included in this conference proceedings document: "Education: The Essential Partnership" (Ramsey); "Australia's Involvement in Education in the Pacific: Partnership or Patronage?" (Baba); "Report by the Rapporteur to the Final Plenary Session"…

VizieR Online Data Catalog: Subaru-UDGs in the Coma cluster (Yagi+, 2016)

NASA Astrophysics Data System (ADS)

Yagi, M.; Koda, J.; Komiyama, Y.; Yamanoi, H.

2016-10-01

We retrieved a wide W-C-RC band (R-band) survey of the Coma cluster of Suprime-Cam from the Subaru public archive (SMOKA; Baba et al. 2002ASPC..281..298B) between 2011 Mar 02 and 2011 Apr 01. (1 data file).

Edge states in gated bilayer-monolayer graphene ribbons and bilayer domain walls

NASA Astrophysics Data System (ADS)

Mirzakhani, M.; Zarenia, M.; Peeters, F. M.

2018-05-01

Using the effective continuum model, the electron energy spectrum of gated bilayer graphene with a step-like region of decoupled graphene layers at the edge of the sample is studied. Different types of coupled-decoupled interfaces are considered, i.e., zigzag (ZZ) and armchair junctions, which result in significant different propagating states. Two non-valley-polarized conducting edge states are observed for ZZ type, which are mainly located around the ZZ-ended graphene layers. Additionally, we investigated both BA-BA and BA-AB domain walls in the gated bilayer graphene within the continuum approximation. Unlike the BA-BA domain wall, which exhibits gapped insulating behaviour, the domain walls surrounded by different stackings of bilayer regions feature valley-polarized edge states. Our findings are consistent with other theoretical calculations, such as from the tight-binding model and first-principles calculations, and agree with experimental observations.

PREFACE: 11th Asia-Pacific Conference on Plasma Science and Technology (APCPST-11) and 25th Symposium on Plasma Science for Materials (SPSM-25)

NASA Astrophysics Data System (ADS)

Watanabe, Takayuki; Kaneko, Toshio; Sekine, Makoto; Tanaka, Yasunori

2013-06-01

advances in thermal and non-equilibrium plasmas as well as on more new and innovative developments in the field of life innovation, green innovation and a technical report session. The editors hope that this volume will be useful and helpful for deepening our understanding of science and technology of plasma materials processing and also for stimulating further development of the plasma technology. Finally, we would like to thank the conference chairmen, the members of the organizing committee, the advisory committee, the executive committee, the program committee, the publication committee, organizing secretariat and financial support from The 153rd Committee on Plasma Materials Science, JSPS. Sponsors and Supporting Organization: The 153rd Committee on Plasma Materials Science, Japan Society for the Promotion of Science Organizing Committee Chairperson: Osamu Tsuji, SAMCO Corporation, Japan Advisory Committee Chairperson: Akihisa Matsuda, Osaka University, Japan Executive Committee Chairperson: Masaru Hori, Nagoya University, Japan Program Committee Chairperson: Takamasa Ishigaki, Hosei University, Japan Publication Committee Chairperson: Takayuki Watanabe, Kyushu University Editors of APCPST-11 and SPMS-25 Professor Takayuki Watanabe, Kyushu University, Japan Professor Toshio Kaneko, Tohoku University, Japan Professor Makoto Sekine, Nagoya University, Japan Professor Yasunori Tanaka, Kanazawa University, Japan

Criminal Regulation of Anti-Forensic Tools in Japan

NASA Astrophysics Data System (ADS)

Ishii, Tetsuya

This paper discusses the continuing landmark debate in a Japanese Court concerning the development and distribution of a peer-to-peer (P2P) file sharing program. The program, known as Winny, facilitates illegal activities such as piracy and the distribution of child pornography because of the encryption and anonymity afforded to users. The court has to determine whether Isamu Kaneko, the designer of Winny, is criminally liable for developing and distributing the program. This paper also assesses whether the judgment in the Winny case might set a precedent for regulating the creation and distribution of anti-forensic tools.

Description of Loffienema dhanoriensis gen. n., sp. n. (Nematoda: Rhabditidae) from Jammu and Kashmir State, India

USDA-ARS?s Scientific Manuscript database

A new genus, Loffienema dhanoriensis gen. n., sp. n. is described and illustrated from soil mixed with mature compost of Biodiversity Park, Baba Ghulam Shah Badshah (BGSB) University, Rajouri, Jammu and Kashmir, India. It is characterized by medium-sized body, slightly offset labial region, weakly d...

Explorations in Higher Education: A South Pacific Critique.

ERIC Educational Resources Information Center

Jones, David R., Ed.; Meek, V. Lynn, Ed.; Weeks, John, Ed.

The collection of essays on higher education in the South Pacific includes: "Transplanting the University" (David R. Jones); "Education in the Small Island States of the South Pacific: The Changing Role of the School and Its Implications for Higher Education" (Tupeni L. Baba); "Co-operation and Collaboration among the…

Field Evaluation of Plant Defense Inducers for the Control of Citrus Huanglongbing.

PubMed

Li, Jinyun; Trivedi, Pankaj; Wang, Nian

2016-01-01

Huanglongbing (HLB) is currently the most economically devastating disease of citrus worldwide and no established cure is available. Defense inducing compounds are able to induce plant resistance effective against various pathogens. In this study the effects of various chemical inducers on HLB diseased citrus were evaluated in four groves (three with sweet orange and one with mandarin) in Florida (United States) for two to four consecutive growing seasons. Results have demonstrated that plant defense inducers including β-aminobutyric acid (BABA), 2,1,3-benzothiadiazole (BTH), and 2,6-dichloroisonicotinic acid (INA), individually or in combination, were effective in suppressing progress of HLB disease. Ascorbic acid (AA) and the nonmetabolizable glucose analog 2-deoxy-D-glucose (2-DDG) also exhibited positive control effects on HLB. After three or four applications for each season, the treatments AA (60 to 600 µM), BABA (0.2 to 1.0 mM), BTH (1.0 mM), INA (0.1 mM), 2-DDG (100 µM), BABA (1.0 mM) plus BTH (1.0 mM), BTH (1.0 mM) plus AA (600 µM), and BTH (1.0 mM) plus 2-DDG (100 µM) slowed down the population growth in planta of 'Candidatus Liberibacter asiaticus', the putative pathogen of HLB and reduced HLB disease severity by approximately 15 to 30% compared with the nontreated control, depending on the age and initial HLB severity of infected trees. These treatments also conferred positive effect on fruit yield and quality. Altogether, these findings indicate that plant defense inducers may be a useful strategy for the management of citrus HLB.

MUVEs and Experiential Learning: Some Examples

ERIC Educational Resources Information Center

Weusijana, Baba Kofi; Svihla, Vanessa; Gawel, Drue; Bransford, John

2009-01-01

Multiuser virtual environments (MUVEs) like Second Life present unparalleled opportunities to help students connect knowledge by description to knowledge by experience; in a MUVE, students can experience phenomena rather than only reading about them. Baba Kofi Weusijana, Vanessa Svihla, Drue Gawel, and John Bransford describe their use of a maze…

Dense Ocean Floor Network for Earthquakes and Tsunamis; DONET/ DONET2, Part2 -Development and data application for the mega thrust earthquakes around the Nankai trough-

NASA Astrophysics Data System (ADS)

Kaneda, Y.; Kawaguchi, K.; Araki, E.; Matsumoto, H.; Nakamura, T.; Nakano, M.; Kamiya, S.; Ariyoshi, K.; Baba, T.; Ohori, M.; Hori, T.; Takahashi, N.; Kaneko, S.; Donet Research; Development Group

2010-12-01

Yoshiyuki Kaneda Katsuyoshi Kawaguchi*, Eiichiro Araki*, Shou Kaneko*, Hiroyuki Matsumoto*, Takeshi Nakamura*, Masaru Nakano*, Shinichirou Kamiya*, Keisuke Ariyoshi*, Toshitaka Baba*, Michihiro Ohori*, Narumi Takakahashi*, and Takane Hori** * Earthquake and Tsunami Research Project for Disaster Prevention, Leading Project , Japan Agency for Marine-Earth Science and Technology (JAMSTEC) **Institute for Research on Earth Evolution, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) DONET (Dense Ocean Floor Network for Earthquakes and Tsunamis) is the real time monitoring system of the Tonankai seismogenic zones around the Nankai trough southwestern Japan. We were starting to develop DONET to perform real time monitoring of crustal activities over there and the advanced early warning system. DONET will provide important and useful data to understand the Nankai trough maga thrust earthquake seismogenic zones and to improve the accuracy of the earthquake recurrence cycle simulation. Details of DONET concept are as follows. 1) Redundancy, Extendable function and advanced maintenance system using the looped cable system, junction boxes and the ROV/AUV. DONET has 20 observatories and incorporated in a double land stations concept. Also, we are developed ROV for the 10km cable extensions and heavy weight operations. 2) Multi kinds of sensors to observe broad band phenomena such as long period tremors, very low frequency earthquakes and strong motions of mega thrust earthquakes over M8: Therefore, sensors such as a broadband seismometer, an accelerometer, a hydrophone, a precise pressure gauge, a differential pressure gauge and a thermometer are equipped with each observatory in DONET. 3) For speedy detections, evaluations and notifications of earthquakes and tsunamis: DONET system will be deployed around the Tonankai seismogenic zone. 4) Provide data of ocean floor crustal deformations derived from pressure sensors: Simultaneously, the development of data

Speech Motor Development during Acquisition of the Voicing Contrast

ERIC Educational Resources Information Center

Grigos, Maria I.; Saxman, John H.; Gordon, Andrew M.

2005-01-01

Lip and jaw movements were studied longitudinally in 19-month-old children as they acquired the voicing contrast for /p/ and /b/. A movement tracking system obtained lip and jaw kinematics as participants produced the target utterances /papa/ and /baba/. Laryngeal adjustments were also tracked through acoustically recorded voice onset time (VOT)…

Plate falling in a fluid: Regular and chaotic dynamics of finite-dimensional models

NASA Astrophysics Data System (ADS)

Kuznetsov, Sergey P.

2015-05-01

Results are reviewed concerning the planar problem of a plate falling in a resisting medium studied with models based on ordinary differential equations for a small number of dynamical variables. A unified model is introduced to conduct a comparative analysis of the dynamical behaviors of models of Kozlov, Tanabe-Kaneko, Belmonte-Eisenberg-Moses and Andersen-Pesavento-Wang using common dimensionless variables and parameters. It is shown that the overall structure of the parameter spaces for the different models manifests certain similarities caused by the same inherent symmetry and by the universal nature of the phenomena involved in nonlinear dynamics (fixed points, limit cycles, attractors, and bifurcations).

Child Adjustment to Parental Combat Deployment: Risk and Resilience Models

DTIC Science & Technology

2011-03-01

if they are not pronounced clearly or are in "baby talk" (for example: "baba" for bottle). FOODS 1. apple 2. banana 3. bread 4. butter 5. cake...blocks 36. book 37. cravons 38. doll 39. 40. pre!;ent 41. 42. swing 43. teddy bear OUTDOORS 44. flower 45. house moon 47. rain 48

Defense Response and Suppression of Phytophthora Blight Disease of Pepper by Water Extract from Spent Mushroom Substrate of Lentinula edodes

PubMed Central

Kang, Dae-Sun; Min, Kyong-Jin; Kwak, A-Min; Lee, Sang-Yeop; Kang, Hee-Wan

2017-01-01

The spent mushroom substrate (SMS) of Lentinula edodes that was derived from sawdust bag cultivation was used as materials for controlling Phytophthora blight disease of pepper. Water extract from SMS (WESMS) of L. edodes inhibited mycelial growth of Phytophthora capsici, suppressed Phytophthora blight disease of pepper seedlings by 65% and promoted growth of the plant over 30%. In high performance liquid chromatography (HPLC) analysis, oxalic acid was detected as the main organic acid compound in WESMS and inhibited the fungal mycelium at a minimum concentration of 200 mg/l. In quantitative real-time PCR, the transcriptional expression of CaBPR1 (PR protein 1), CaBGLU (β-1,3-glucanase), CaPR-4 (PR protein 4), and CaPR-10 (PR protein 10) were significantly enhanced on WESMS and DL-β-aminobutyric acid (BABA) treated pepper leaves. In addition, the salicylic acid content was also increased 4 to 6 folds in the WESMS and BABA treated pepper leaves compared to water treated leaf sample. These findings suggest that WESMS of L. edodes suppress Phytophthora blight disease of pepper through multiple effects including antifungal activity, plant growth promotion, and defense gene induction. PMID:28592945

Defense Response and Suppression of Phytophthora Blight Disease of Pepper by Water Extract from Spent Mushroom Substrate of Lentinula edodes.

PubMed

Kang, Dae-Sun; Min, Kyong-Jin; Kwak, A-Min; Lee, Sang-Yeop; Kang, Hee-Wan

2017-06-01

The spent mushroom substrate (SMS) of Lentinula edodes that was derived from sawdust bag cultivation was used as materials for controlling Phytophthora blight disease of pepper. Water extract from SMS (WESMS) of L. edodes inhibited mycelial growth of Phytophthora capsici , suppressed Phytophthora blight disease of pepper seedlings by 65% and promoted growth of the plant over 30%. In high performance liquid chromatography (HPLC) analysis, oxalic acid was detected as the main organic acid compound in WESMS and inhibited the fungal mycelium at a minimum concentration of 200 mg/l. In quantitative real-time PCR, the transcriptional expression of CaBPR1 (PR protein 1), CaBGLU (β-1,3-glucanase), CaPR-4 (PR protein 4), and CaPR-10 (PR protein 10) were significantly enhanced on WESMS and DL-β-aminobutyric acid (BABA) treated pepper leaves. In addition, the salicylic acid content was also increased 4 to 6 folds in the WESMS and BABA treated pepper leaves compared to water treated leaf sample. These findings suggest that WESMS of L. edodes suppress Phytophthora blight disease of pepper through multiple effects including antifungal activity, plant growth promotion, and defense gene induction.

Emergency Department Groups Classification System: An Evaluation for Military Health Care Use

DTIC Science & Technology

1993-05-01

EXAM BABA ALLERGY CLINIC V718 OBSERVATION FOR OTHER SPECIFIED CONDITIONS BACA CARDIOLOGY V717 OBSERVATION FOR OTHER SPECIFIED CONDITIONS BAEA DIABETIC ...CLINIC 25000 DIABETES MELLITUS WITHOUT MENTION OF COMPLICATION, UNSPECIFIED BAFA ENDOCRINOLOGY V718 OBSERVATION OF OTHER SPECIFIED CONDITIONS BAHA...TREATMENT BBJA PEDIATRIC SURGERY V670 FOLLOW-UP EXAM FOLLOWING SURGERY BCAA FAMILY PLANNING V2509 CONTRACEPTIVE MANAGEMENT, OTHER BCBA GYNECOLOGY V670

Progress in the Rotational Analysis of the Ground and Low-Lying Vibrationally Excited States of Malonaldehyde

NASA Astrophysics Data System (ADS)

Goudreau, E. S.; Tokaryk, Dennis W.; Ross, Stephen Cary; Billinghurst, Brant E.

2016-06-01

Despite being an important prototype molecule for intramolecular proton tunnelling, the far-IR spectrum of the internally hydrogen-bonded species malonaldehyde (C_3O_2H_4) is not yet well understood. In the talk I gave at the ISMS meeting in 2015 I discussed the high-resolution spectra we obtained at the Canadian Light Source synchrotron in Saskatoon, Saskatchewan. These spectra include a number of fundamental vibrational bands in the 100-2000 cm-1 region. In our efforts to analyze these bands we have noticed that our ground state combination differences show a large drift (up to an order of magnitude larger than our experimental error) away from those calculated using constants established by Baba et al., particularly in regions of high J (above 30) and low Ka (below 5). An examination of the previous microwave and far-IR studies reveals that this region of J-Ka space was not represented in the lines that Baba et al. used to generate the values for their fitting parameters. By including our own measurements in the fitting, we were able to improve the characterization of the ground state so that it is now consistent with all of the existing data. This characterization now covers a much larger range of J-Ka space and has enabled us to make significant progress in analyzing our far-IR synchrotron spectra. These include an excited vibrational state at 241 cm-1 as well as several states split by the tunnelling effect at higher wavenumber. T. Baba, T. Tanaka, I. Morino, K. M. T. Yamada, K. Tanaka. Detection of the tunneling-rotation transitions of malonaldehyde in the submillimeter-wave region. J. Chem. Phys., 110. 4131-4133 (1999) P. Turner, S. L. Baughcum, S. L. Coy, Z. Smith. Microwave Spectroscopic Study of Malonaldehyde. 4. Vibration-Rotation Interaction in Parent Species. J. Am. Chem. Soc., 106. 2265-2267 (1984) D. W. Firth, K. Beyer, M. A. Dvorak, S. W. Reeve, A. Grushow, K. R. Leopold. Tunable far-infrared spectroscopy of malonaldehyde. J. Chem. Phys., 94. 1812

Progress in Spin Dynamics Solid-State Nuclear Magnetic Resonance with the Application of Floquet-Magnus Expansion to Chemical Shift Anisotropy

PubMed Central

Mananga, Eugene Stephane

2013-01-01

The purpose of this article is to present an historical overview of theoretical approaches used for describing spin dynamics under static or rotating experiments in solid state nuclear magnetic resonance. The article gives a brief historical overview for major theories in nuclear magnetic resonance and the promising theories. We present the first application of Floquet-Magnus expansion to chemical shift anisotropy when irradiated by BABA pulse sequence. PMID:23711337

Formation of Complex Amino Acid Precursors in Simulated Primitive Atmosphere and Their Alteration under Simulated Submarine Hydrothermal Conditions

NASA Astrophysics Data System (ADS)

Kobayashi, Kensei; Kurihara, Hironari; Hirako, Tomoaki; Obayashi, Yumiko; Kaneko, Takeo; Takano, Yoshinori; Yoshimura, Yoshitaka

Since late 1970's a great number of submarine hydrothermal systems (SHSs) has been dis-covered, and they are considered possible sites of chemical evolution and generation of life on the Earth since their discovery in late 1970s. A number of experiments simulating the con-ditions of SHSs were conducted, and abiotic production and polymerization of amino acids were reported. Free amino acids were frequently used as starting materials to examine possible organic reactions in the simulation experiments. In our early studies, not free amino acids but complex amino acids precursors with large molecular weights were formed abiotically from simulated primitive Earth atmosphere (a mixture of CO, N2 and H2 O) (Takano et al., 2004). Such complex organics (hereafter referred as to CNWs) should have been delivered to SHSs in Primitive Ocean, where they were subjected to further alteration. We examined possible alteration of the complex organics in high-temperature high-pressure environments by the su-percritical water flow reactor (SCWFR) (Islam et al.. 2003) and an autoclave. CNWs were quite hydrophilic compounds whose molecular weights were ca. 3000. After heating 573 K for 2 min in the SCWFR, aggregates of organics were formed, which were separated from aque-ous solution with a Nucleopore filter (pore size: 200 nm). We propose the following scenario of chemical evolution: (1) Complex organics including amino acid precursors were formed in primitive atmosphere and/or extraterrestrial environments, (ii) they were delivered to primor-dial SHSs, (iii) hydrothermal alteration occurred in SHSs to give organic aggregates, (iv) quite primitive molecular systems with subtle biological functions were generated in the competition among such aggregates. References: Islam, Md. N., Kaneko, T., and Kobayashi, K (2003). Reactions of Amino Acids with a Newly ConstructedSupercritical Water Flow Reactor Simulating Submarine Hydrothermal Systems. Bull. Chem. Soc. Jpn., 76, 1171. Takano, Y

The Effect of Beta Adrenergic Blockade on Ratings of Perceived Exertion.

DTIC Science & Technology

1984-01-01

exrcis is uvo Hughson, et al. (47) investigated the effect of beta blockade using a single, 100-mg oral dose of metoprolol or matched placebo on 12...administered either placebo, propranolol (80 mug) or metoprolol (100 mug) in a double- blind, randomised manner. Before the muscle-strength tests were...The non-selective BABA propranolol and the selective agent metoprolol were compared with a placebo in a double blind cross-over design. Measurements

KOJAK Group Finder: Scalable Group Detection via Integrated Knowledge-Based and Statistical Reasoning

DTIC Science & Technology

2006-09-01

STELLA and PowerLoomn. These modules comunicate with a knowledge basec using KIF and stan(lardl relational database systelnis using either standard...groups ontology as well as a rule that infers additional seed members based on joint participation in a terrorism event. EDB schema files are a special... terrorism links from the Ali Baba EDB. Our interpretation of such links is that they KOJAK Manual E-42 encode that two people committed an act of

SAMP8 mice as a neuropathological model of accelerated brain aging and dementia: Toshio Takeda's legacy and future directions.

PubMed

Akiguchi, Ichiro; Pallàs, Mercè; Budka, Herbert; Akiyama, Haruhiko; Ueno, Masaki; Han, Jingxian; Yagi, Hideo; Nishikawa, Tomohumi; Chiba, Yoichi; Sugiyama, Hiroshi; Takahashi, Ryoya; Unno, Keiko; Higuchi, Keiichi; Hosokawa, Masanori

2017-08-01

Senescence accelerated mice P8 (SAMP8) show significant age-related deteriorations in memory and learning ability in accordance with early onset and rapid advancement of senescence. Brains of SAMP8 mice reveal an age-associated increase of PAS-positive granular structures in the hippocampal formation and astrogliosis in the brain stem and hippocampus. A spongy degeneration in the brain stem appears at 1 month of age and reaches a maximum at 4-8 months. In addition, clusters of activated microglia also appear around the vacuoles in the brain stem. β/A4(Aβ) protein-like immunoreactive granular structures are observed in various regions and increase in number markedly with age. Other age-associated histological changes include cortical atrophy, neuronal cell loss in locus coeruleus and lateral tegmental nuclei, intraneuronal accumulation of lipopigments in Purkinje cells and eosinophilic inclusion bodies in thalamic neurons. A blood-brain barrier dysfunction and astrogliosis are also prominent with advancing age in the hippocampus. These changes are generally similar to the pathomorphology of aging human brains and characterized by their association with some specific glioneuronal reactions. As for the hallmarks of Alzheimer brains, tau morphology has not yet been confirmed regardless of the age-related increase in phosphorylated tau in SAMP8 mice brains, but early age-related Aβ deposition in the hippocampus has recently been published. SAMP8 mice are, therefore, not only a senescence-accelerated model but also a promising model for Alzheimer's disease and other cognitive disorders. © 2017 Japanese Society of Neuropathology.

Radiatively Driven Hypersonic Wind Tunnel (RDHWT) Program Magnetohydrodynamic Accelerator Research Into Advanced Hypersonics (MARIAH II)

DTIC Science & Technology

2000-01-08

room temperature and 400 K. The major reason for increasing the plenum temperature was to avoid condensation in the unheated flow. Follow-on e...developed laminar flow in a pipe, an experimentally suggested form for the Nusselt Number is (Ref. 11): 3 1 PrRe µ µ861...Compression of Condensed Matter Conference, Colorado Springs, Colorado, June 28–July 2, 1993, AIP Press, NY, 1994, pp 1581–1584. 8. Baba, K. and Ochi, M

Awareness and Prevalence of Mycotoxin Contamination in Selected Nigerian Fermented Foods

PubMed Central

Njobeh, Patrick; Obadina, Adewale

2017-01-01

Fermented food samples (n = 191) including maize gruel (ogi), sorghum gruel (ogi-baba), melon seed (ogiri), locust bean (iru) and African oil bean seed (ugba) from Southwest Nigeria were quantified for 23 mycotoxins, including aflatoxin B1 (AFB1), fumonisin B1 (FB1), and sterigmatocystin (STE) using liquid chromatography-tandem mass spectrometry. The practices, perceived understanding and health risks related to fungal and mycotoxin contamination amongst fermented food sellers was also established. Data obtained revealed that 82% of the samples had mycotoxins occurring singly or in combination. FB1 was present in 83% of ogi-baba samples, whereas 20% of ugba samples contained AFB1 (range: 3 to 36 µg/kg) and STE was present in 29% of the ogi samples. In terms of multi-mycotoxin contamination, FB1 + FB2 + FB3 + STE + AFB1 + alternariol + HT-2 co-occurred within one sample. The awareness study revealed that 98% of respondents were unaware of mycotoxin contamination, and their education level slightly correlated with their level of awareness (p < 0.01, r = 0.308). The extent to which the analyzed mycotoxins contaminated these food commodities, coupled with the poor perception of the population under study on fungi and mycotoxins, justifies the need to enact fungal and mycotoxin mitigation strategies along the food chain. PMID:29117141

A novel method of brainstem auditory evoked potentials using complex verbal stimuli.

PubMed

Kouni, Sophia N; Koutsojannis, Constantinos; Ziavra, Nausika; Giannopoulos, Sotirios

2014-08-01

The click and tone-evoked auditory brainstem responses are widely used in clinical practice due to their consistency and predictability. More recently, the speech-evoked responses have been used to evaluate subcortical processing of complex signals, not revealed by responses to clicks and tones. Disyllable stimuli corresponding to familiar words can induce a pattern of voltage fluctuations in the brain stem resulting in a familiar waveform, and they can yield better information about brain stem nuclei along the ascending central auditory pathway. We describe a new method with the use of the disyllable word "baba" corresponding to English "daddy" that is commonly used in many other ethnic languages spanning from West Africa to the Eastern Mediterranean all the way to the East Asia. This method was applied in 20 young adults institutionally diagnosed as dyslexic (10 subjects) or light dyslexic (10 subjects) who were matched with 20 sex, age, education, hearing sensitivity, and IQ-matched normal subjects. The absolute peak latencies of the negative wave C and the interpeak latencies of A-C elicited by verbal stimuli "baba" were found to be significantly increased in the dyslexic group in comparison with the control group. The method is easy and helpful to diagnose abnormalities affecting the auditory pathway, to identify subjects with early perception and cortical representation abnormalities, and to apply the suitable therapeutic and rehabilitation management.

The Rise of Syria’s Urban Poor: Why the War for Syria’s Future Will Be Fought Over the Country’s New Urban Villages

DTIC Science & Technology

2014-01-01

those urban poor living in the slums sprouting up around Syria’s cities. This “village-izing” of Syria’s ancient cit- ies has changed the complexion...1986 to 20.8 million in 2010.6 This population rose predominantly in the slums surrounding Syria’s cities. From 2000 to 2010, Syria grew by 4.92...opposition activity. Baba Amr, a slum of Homs adjacent to the orchards that once fed the city, is synonymous with the THE RISE OF SYRIA’S POOR

Mission Design and Concept of Operations of a 6U CubeSat Mission for Proximity Operations and RSO Imaging

DTIC Science & Technology

2013-05-29

Design and Concept of Operations of a 6U Cube Sat Mission for NIA Proximity Oper111ions and RSO Imaging 5b. GRANT NUMBER NIA 5c. PROGRAM ELEMENT...NUMBER NIA 6. AUTHOR(S) 5d. PROJECT NUMBER B. Udrea, M. Nayak, M. Ryle, N. Martini, S. Gillespie, T. Grande, S. Caicedo, S. NIA Wilette, A. Baba...K. , Harri s, J. DiGregorio, S. Salzburger, P. Patel , A. Huang 5e. TASK NUMBER NIA 5f. WORK UNIT NUMBER NIA T. PERFORMING ORGANIZATION NAME(S

Directly Estimating Earthquake Rupture Area using Second Moments to Reduce the Uncertainty in Stress Drop

NASA Astrophysics Data System (ADS)

McGuire, Jeffrey J.; Kaneko, Yoshihiro

2018-06-01

The key kinematic earthquake source parameters: rupture velocity, duration and area, shed light on earthquake dynamics, provide direct constraints on stress-drop, and have implications for seismic hazard. However, for moderate and small earthquakes, these parameters are usually poorly constrained due to limitations of the standard analysis methods. Numerical experiments by Kaneko and Shearer [2014,2015] demonstrated that standard spectral fitting techniques can lead to roughly 1 order of magnitude variation in stress-drop estimates that do not reflect the actual rupture properties even for simple crack models. We utilize these models to explore an alternative approach where we estimate the rupture area directly. For the suite of models, the area averaged static stress drop is nearly constant for models with the same underlying friction law, yet corner frequency based stress-drop estimates vary by a factor of 5-10 even for noise free data. Alternatively, we simulated inversions for the rupture area as parameterized by the second moments of the slip distribution. A natural estimate for the rupture area derived from the second moments is A=πLcWc, where Lc and Wc are the characteristic rupture length and width. This definition yields estimates of stress drop that vary by only 10% between the models but are slightly larger than the true area-averaged values. We simulate inversions for the second moments for the various models and find that the area can be estimated well when there are at least 15 available measurements of apparent duration at a variety of take-off angles. The improvement compared to azimuthally-averaged corner-frequency based approaches results from the second moments accounting for directivity and removing the assumption of a circular rupture area, both of which bias the standard approach. We also develop a new method that determines the minimum and maximum values of rupture area that are consistent with a particular dataset at the 95% confidence

The cag PAI is intact and functional but HP0521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore.

PubMed

Schmidt, H-M A; Andres, S; Nilsson, C; Kovach, Z; Kaakoush, N O; Engstrand, L; Goh, K-L; Fock, K M; Forman, D; Mitchell, H

2010-04-01

Helicobacter pylori-related disease is at least partially attributable to the genotype of the infecting strain, particularly the presence of specific virulence factors. We investigated the prevalence of a novel combination of H. pylori virulence factors, including the cag pathogenicity island (PAI), and their association with severe disease in isolates from the three major ethnicities in Malaysia and Singapore, and evaluated whether the cag PAI was intact and functional in vitro. Polymerase chain reaction (PCR) was used to detect dupA, cagA, cagE, cagT, cagL and babA, and to type vacA, the EPIYA motifs, HP0521 alleles and oipA ON status in 159 H. pylori clinical isolates. Twenty-two strains were investigated for IL-8 induction and CagA translocation in vitro. The prevalence of cagA, cagE, cagL, cagT, babA, oipA ON and vacA s1 and i1 was >85%, irrespective of the disease state or ethnicity. The prevalence of dupA and the predominant HP0521 allele and EPIYA motif varied significantly with ethnicity (p < 0.05). A high prevalence of an intact cag PAI was found in all ethnic groups; however, no association was observed between any virulence factor and disease state. The novel association between the HP0521 alleles, EPIYA motifs and host ethnicity indicates that further studies to determine the function of this gene are important.

Simple model of a photoacoustic system as a CR circuit

NASA Astrophysics Data System (ADS)

Fukuhara, Akiko; Kaneko, Fumitoshi; Ogawa, Naohisa

2012-05-01

We introduce the photoacoustic educational system (PAES), by which we can identify which gas causes the greenhouse effect in a classroom (Kaneko et al 2010 J. Chem. Educ. 87 202-4). PAES is an experimental system in which a pulse of infrared (IR) is absorbed into gas as internal energy, an oscillation of pressure (sound) appears, and then we can measure the absorptance of IR by the strength of sound. In this paper, we construct a simple mathematical model for PAES which is equivalent to the CR circuit. The energy absorption of an IR pulse into gas corresponds to the charge of a condenser and the heat diffusion to the outside corresponds to the energy dissipation by electric resistance. We analyse the experimental results by using this simple model, and check its validity. Although the model is simple, it explains phenomena occurring in PAES and can be a good educational resource.

Extended wave-packet model to calculate energy-loss moments of protons in matter

NASA Astrophysics Data System (ADS)

Archubi, C. D.; Arista, N. R.

2017-12-01

In this work we introduce modifications to the wave-packet method proposed by Kaneko to calculate the energy-loss moments of a projectile traversing a target which is represented in terms of Gaussian functions for the momentum distributions of electrons in the atomic shells. These modifications are introduced using the Levine and Louie technique to take into account the energy gaps corresponding to the different atomic levels of the target. We use the extended wave-packet model to evaluate the stopping power, the energy straggling, the inverse mean free path, and the ionization cross sections for protons in several targets, obtaining good agreements for all these quantities on an extensive energy range that covers low-, intermediate-, and high-energy regions. The extended wave-packet model proposed here provides a method to calculate in a very straightforward way all the significant terms of the inelastic interaction of light ions with any element of the periodic table.

Differences in Surface-Exposed Antigen Expression between Helicobacter pylori Strains Isolated from Duodenal Ulcer Patients and from Asymptomatic Subjects

PubMed Central

Thoreson, Ann-Catrin E.; Hamlet, Annika; Çelik, Janet; Byström, Mona; Nyström, Susanne; Olbe, Lars; Svennerholm, Ann-Mari

2000-01-01

We have analyzed possible qualitative and quantitative differences in antigen expression between Helicobacter pylori strains isolated from the antrum and different locations in the duodenum of 21 duodenal ulcer (DU) patients and 20 asymptomatic subjects (AS) by enzyme-linked immunosorbent assay (ELISA) and inhibition ELISA. Almost all antral and duodenal strains grown in vitro expressed the N-acetyl-neuroaminyllactose-binding hemagglutinin, flagellins (subunits FlaA and FlaB), urease, a 26-kDa protein, and a neutrophil-activating protein. In 75% of both the DU patients and the AS, antral H. pylori strains expressed either the blood group antigen Lewis y (Ley) alone or together with the Lex antigen. However, duodenal H. pylori strains of DU patients expressed Ley antigen more frequently than corresponding strains of AS (P < 0.05). Presence of Ley on H. pylori was related to the degree of active duodenitis (P < 0.05). Duodenal H. pylori strains isolated from AS were significantly more often Lewis nontypeable than duodenal strains of DU patients (P < 0.01). Presence of H. pylori blood group antigen-binding adhesin (BabA) was significantly higher on both antral and duodenal strains isolated from DU patients than on corresponding strains isolated from AS (P < 0.05). BabA-positive duodenal H. pylori strains isolated from DU patients were associated with active duodenitis more frequently than corresponding strains isolated from AS (P < 0.01). Infection with H. pylori strains positive for Ley and BabA in the duodenum is associated with development of duodenal ulcer formation. PMID:10970397

Spatiotemporal distribution of interplate slip following the 2003 Tokachi-oki earthquake deduced from ocean bottom pressure gauges and onland GNSS data

NASA Astrophysics Data System (ADS)

Itoh, Y.; Nishimura, T.; Ariyoshi, K.; Matsumoto, H.

2017-12-01

The 2003 Tokachi-oki earthquake (Mw 8.0) is an interplate earthquake along the Kurile trench. Its co- and post-seismic deformation has been observed by onland GNSS [e.g., Miyazaki et al. 2004] and modeled with afterslip and/or viscoelastic relaxation [e.g., Itoh and Nishimura 2016]. In the offshore region, two ocean bottom pressure gauges (OBPs) are operated by JAMSTEC since July 1999 [Hirata et al. 2002] and they have continuously observed the pre-, co- and post-seismic pressure change of the 2003 event [Baba et al. 2006]. The observed pressure change can be interpreted as vertical displacement, and the resolution of slip beneath the seafloor far from the land was improved by incorporating these pressure data into onland GNSS data [Baba et al. 2006]. However, no previous studies used postseismic pressure data for several years to estimate an interplate slip. Because, in this region, an M8 class event similar to the 2003 event has occurred in 1952, it is important to clarify a healing process of an interplate coupling which may lead to a next M8 class event in terms of the earthquake cycle. Itoh and Nishimura [2017, JpGU-AGU Joint Meeting] estimated it but used only onland GNSS data. In this study, we use both onland GNSS and OBP data. For OBP data analysis, we first removed the tidal component using BAYTAP08 [Tamura et al. 1991; Tamura and Agnew 2008]. Next, we corrected the temporal fluctuation of data correlating with temperature [Baba et al. 2006]. We estimated the linear trend before the 2003 event using the corrected time series from 2002 Jan. 1 to 2003 Sep. 1 and remove the estimated trend from the data after the 2003 event. Here, we assumed a non-linear drift could be ignored. Finally, we down-sampled the remained time series with an interval of 1 month. For the onland GNSS data, we used the same data set of Itoh and Nishimura [2017, JpGU-AGU Joint Meeting]. We constructed the model consisting of coseismic slip of the 2003 and M6-7 events in the postseismic

Transfer of radio-cesium from forest soil to woodchips using fungal activities

NASA Astrophysics Data System (ADS)

Kaneko, Nobuhiro; Huang, Yao; Tanaka, Yoichiro; Fujiwara, Yoshihiro; Sasaki, Michiko; Toda, Hiroto; Takahashi, Terumasa; Kobayashi, Tatsuaki; Harada, Naoki; Nonaka, Masahiro

2014-05-01

Raido-cesium released to terrestrial ecosystems by nuclear accidents is know to accumulate forest soil and organic layer on the soil. Forests in Japan are not exceptions. Practically it is impossible to decontaminate large area of forests. However, there is a strong demand from local people, who has been using secondary forests (Satoyama) around croplands in hilly areas, to decontaminate radio-cesium, because those people used to collect wild mushrooms and edible plants, and there are active cultures of mushrooms using logs and sawdusts. These natural resource uses consist substantial part of their economical activities, Therefore it is needed to decontaminate some selected part of forests in Japan to local economy. Clear cutting and scraping surface soil and organic matter are common methods of decontamination. However the efficiency of decontamination is up to 30% reduction of aerial radiation, and the cost to preserve contaminated debris is not affordable. In this study we used wood chips as a growth media for saprotrophic fungi which are known to accumulate redio-cesium. There are many studies indicated that mushrooms accumulated redio-cesium from forest soil and organic layer. It is not practical to collect mushrooms to decontaminate redio-cesium, because biomass of mushrooms are not enough to collect total contaminants. Mushrooms are only minor part of saprotrophic fungi. Fungal biomass in forest soil is about 1% of dead organic matter on forest floor. Our previous study to observe Cs accumulation to decomposing leaf litter indicated 18% absorption of total soil radio-Cs to litter during one year field incubation (Kaneko et al., 2013), and Cs concentration was proportional to fungal biomass on litter. This result indicated that fungi transferred radio-cesium around newly supplied leaf litter free of contamination. Therefore effective decontamination will be possible if we can provide large amount of growth media for saprotrophic fungi, and the media can be

Magmatic Diversity of the Wehrlitic Intrusions in the Oceanic Lower Crust of the Northern Oman Ophiolite

NASA Astrophysics Data System (ADS)

Kaneko, R.; Adachi, Y.; Miyashita, S.

2014-12-01

The Oman ophiolite extends along the east coast of Oman, and is the world's largest and best-preserved slice of obducted oceanic lithosphere. The magmatic history of this ophiolite is complex and is generally regarded as having occurred in three stages (MOR magmatism, subduction magmatism and intraplate magmatism). Wehrlitic intrusions constitute an important element of oceanic lower crust of the ophiolite, and numerous intrusions cut gabbro units in the northern Salahi block of this ophiolite. In this study area, we identified two different types of wehrlitic intrusions. One type of the intrusions mainly consists of dunite, plagioclase (Pl) wehrlite and mela-olivine (Ol) gabbro, in which the crystallization sequence is Ol followed by the contemporaneous crystallization of Pl and clinopyroxene (Cpx). This type is called "ordinary" wehrlitic intrusions and has similar mineral compositions to host gabbros (Adachi and Miyashita 2003; Kaneko et al. 2014). Another type of the intrusions is a single intrusion that crops out in an area 250 m × 150 m along Wadi Salahi. This intrusion consists of Pl-free "true" wehrlite, in which the crystallization sequence is Ol and then Cpx. The forsterite contents (Fo%) of Ol from the "ordinary" wehrlitic intrusions and "true" wehrlitic intrusions have ranges of 90.8-87.0 (NiO = 0.36-0.13 wt%) and 84.7 (NiO = 0.31 wt%), respectively. Cr numbers (Cr#) of Cr-spinel from the "true" wehrlitic intrusions show higher Cr# value of 0.85 than those of the "ordinary" wehrlitic intrusions (0.48-0.64). But the former is characterized by very high Fe3+ values (YFe3+ = 0.49-0.68). Kaneko et al. (2014) showed that the "ordinary" ubiquitous type has similar features to MOR magmatism and the depleted type in the Fizh block (Adachi and Miyashita 2003) links to subduction magmatism. These types are distinguished by their mineral chemistries (TiO2 and Na2O contents of Cpx). The TiO2 and Na2O contents of Cpx from the "true" wehrlitic intrusions have 0

Antiadhesive Properties of Abelmoschus esculentus (Okra) Immature Fruit Extract against Helicobacter pylori Adhesion

PubMed Central

Shevtsova, Anna; Glocker, Erik; Borén, Thomas; Hensel, Andreas

2014-01-01

Background Traditional Asian and African medicine use immature okra fruits (Abelmoschus esculentus) as mucilaginous food to combat gastritis. Its effectiveness is due to polysaccharides that inhibit the adhesion of Helicobacter pylori to stomach tissue. The present study investigates the antiadhesive effect in mechanistic detail. Methodology A standardized aqueous fresh extract (Okra FE) from immature okra fruits was used for a quantitative in vitro adhesion assay with FITC-labled H. pylori J99, 2 clinical isolates, AGS cells, and fluorescence-activated cell sorting. Bacterial adhesins affected by FE were pinpointed using a dot-blot overlay assay with immobilized Lewisb, sialyl-Lewisa, H-1, laminin, and fibronectin. 125I-radiolabeled Okra FE polymer served for binding studies to different H. pylori strains and interaction experiments with BabA and SabA. Iron nanoparticles with different coatings were used to investigate the influence of the charge-dependence of an interaction on the H. pylori surface. Principal findings Okra FE dose-dependently (0.2 to 2 mg/mL) inhibited H. pylori binding to AGS cells. FE inhibited the adhesive binding of membrane proteins BabA, SabA, and HpA to its specific ligands. Radiolabeled compounds from FE bound non-specifically to different strains of H. pylori, as well as to BabA/SabA deficient mutants, indicating an interaction with a still-unknown membrane structure in the vicinity of the adhesins. The binding depended on the charge of the inhibitors. Okra FE did not lead to subsequent feedback regulation or increased expression of adhesins or virulence factors. Conclusion Non-specific interactions between high molecular compounds from okra fruits and the H. pylori surface lead to strong antiadhesive effects. PMID:24416297

Electrical feature at the depths of lithosphere-asthenosphere boundary beneath the petit-spot volcanic field in northwestern Pacific

NASA Astrophysics Data System (ADS)

Baba, K.; Abe, N.; Hirano, N.; Ichiki, M.

2017-12-01

Small-scale volcanoes possibly associated with flexure of oceanic lithosphere are called "petit-spots" and petit-spot volcanic fields have been recognized in many places in the world since the first discovery in northwestern Pacific (NWP) (Hirano et al., 2001; 2006). We have investigated the electrical feature of the lithosphere-asthenosphere boundary (LAB) through marine magnetotelluric (MT) survey to elucidate the magma generation and migration process of the NWP petit-spot. The MT array that consists of nine sites covers about 1,000 km times 1,000 km area around the petit-spot. The data were collected during several periods in 2002-2008. A one-dimensional (1-D) representative structure in the array was first estimated to explain the averaged MT responses in the array. The 1-D profile suggest that the resistive layer, which may be interpreted as cool lithosphere, is likely thicker than predictions by typical models for thermally conductive cooling of the lithosphere having a finite thickness over time since its creation at a mid-ocean ridge (Baba et al., 2017). We have further analyzed the data using a three-dimensional inversion approach (Siripunvaraporn et al., 2005; Tada et al., 2012; Baba et al., 2013). Preliminary results show that the resistive lithospheric layer may be thinner just beneath the petit-spot field. Distribution of the relatively high conductivity anomaly at the LAB depth is critical to discuss if the petit-spot magma source is ubiquitous. Therefore, necessity of the feature should be carefully examined. Quantitative interpretation of electrical conductivity in terms of partial melting and volatile (H2O and CO2) contents in the mantle will also be attempted and presented in the conference.

Multiplex-PCR-Based Screening and Computational Modeling of Virulence Factors and T-Cell Mediated Immunity in Helicobacter pylori Infections for Accurate Clinical Diagnosis.

PubMed

Oktem-Okullu, Sinem; Tiftikci, Arzu; Saruc, Murat; Cicek, Bahattin; Vardareli, Eser; Tozun, Nurdan; Kocagoz, Tanil; Sezerman, Ugur; Yavuz, Ahmet Sinan; Sayi-Yazgan, Ayca

2015-01-01

The outcome of H. pylori infection is closely related with bacteria's virulence factors and host immune response. The association between T cells and H. pylori infection has been identified, but the effects of the nine major H. pylori specific virulence factors; cagA, vacA, oipA, babA, hpaA, napA, dupA, ureA, ureB on T cell response in H. pylori infected patients have not been fully elucidated. We developed a multiplex- PCR assay to detect nine H. pylori virulence genes with in a three PCR reactions. Also, the expression levels of Th1, Th17 and Treg cell specific cytokines and transcription factors were detected by using qRT-PCR assays. Furthermore, a novel expert derived model is developed to identify set of factors and rules that can distinguish the ulcer patients from gastritis patients. Within all virulence factors that we tested, we identified a correlation between the presence of napA virulence gene and ulcer disease as a first data. Additionally, a positive correlation between the H. pylori dupA virulence factor and IFN-γ, and H. pylori babA virulence factor and IL-17 was detected in gastritis and ulcer patients respectively. By using computer-based models, clinical outcomes of a patients infected with H. pylori can be predicted by screening the patient's H. pylori vacA m1/m2, ureA and cagA status and IFN-γ (Th1), IL-17 (Th17), and FOXP3 (Treg) expression levels. Herein, we report, for the first time, the relationship between H. pylori virulence factors and host immune responses for diagnostic prediction of gastric diseases using computer-based models.

Brainstem auditory evoked potentials with the use of acoustic clicks and complex verbal sounds in young adults with learning disabilities.

PubMed

Kouni, Sophia N; Giannopoulos, Sotirios; Ziavra, Nausika; Koutsojannis, Constantinos

2013-01-01

Acoustic signals are transmitted through the external and middle ear mechanically to the cochlea where they are transduced into electrical impulse for further transmission via the auditory nerve. The auditory nerve encodes the acoustic sounds that are conveyed to the auditory brainstem. Multiple brainstem nuclei, the cochlea, the midbrain, the thalamus, and the cortex constitute the central auditory system. In clinical practice, auditory brainstem responses (ABRs) to simple stimuli such as click or tones are widely used. Recently, complex stimuli or complex auditory brain responses (cABRs), such as monosyllabic speech stimuli and music, are being used as a tool to study the brainstem processing of speech sounds. We have used the classic 'click' as well as, for the first time, the artificial successive complex stimuli 'ba', which constitutes the Greek word 'baba' corresponding to the English 'daddy'. Twenty young adults institutionally diagnosed as dyslexic (10 subjects) or light dyslexic (10 subjects) comprised the diseased group. Twenty sex-, age-, education-, hearing sensitivity-, and IQ-matched normal subjects comprised the control group. Measurements included the absolute latencies of waves I through V, the interpeak latencies elicited by the classical acoustic click, the negative peak latencies of A and C waves, as well as the interpeak latencies of A-C elicited by the verbal stimulus 'baba' created on a digital speech synthesizer. The absolute peak latencies of waves I, III, and V in response to monoaural rarefaction clicks as well as the interpeak latencies I-III, III-V, and I-V in the dyslexic subjects, although increased in comparison with normal subjects, did not reach the level of a significant difference (p<0.05). However, the absolute peak latencies of the negative wave C and the interpeak latencies of A-C elicited by verbal stimuli were found to be increased in the dyslexic group in comparison with the control group (p=0.0004 and p=0.045, respectively

Overview of transport and MHD stability study: focusing on the impact of magnetic field topology in the Large Helical Device

NASA Astrophysics Data System (ADS)

Ida, K.; Nagaoka, K.; Inagaki, S.; Kasahara, H.; Evans, T.; Yoshinuma, M.; Kamiya, K.; Ohdach, S.; Osakabe, M.; Kobayashi, M.; Sudo, S.; Itoh, K.; Akiyama, T.; Emoto, M.; Dinklage, A.; Du, X.; Fujii, K.; Goto, M.; Goto, T.; Hasuo, M.; Hidalgo, C.; Ichiguchi, K.; Ishizawa, A.; Jakubowski, M.; Kawamura, G.; Kato, D.; Morita, S.; Mukai, K.; Murakami, I.; Murakami, S.; Narushima, Y.; Nunami, M.; Ohno, N.; Pablant, N.; Sakakibara, S.; Seki, T.; Shimozuma, T.; Shoji, M.; Tanaka, K.; Tokuzawa, T.; Todo, Y.; Wang, H.; Yokoyama, M.; Yamada, H.; Takeiri, Y.; Mutoh, T.; Imagawa, S.; Mito, T.; Nagayama, Y.; Watanabe, K. Y.; Ashikawa, N.; Chikaraishi, H.; Ejiri, A.; Furukawa, M.; Fujita, T.; Hamaguchi, S.; Igami, H.; Isobe, M.; Masuzaki, S.; Morisaki, T.; Motojima, G.; Nagasaki, K.; Nakano, H.; Oya, Y.; Suzuki, C.; Suzuki, Y.; Sakamoto, R.; Sakamoto, M.; Sanpei, A.; Takahashi, H.; Tsuchiya, H.; Tokitani, M.; Ueda, Y.; Yoshimura, Y.; Yamamoto, S.; Nishimura, K.; Sugama, H.; Yamamoto, T.; Idei, H.; Isayama, A.; Kitajima, S.; Masamune, S.; Shinohara, K.; Bawankar, P. S.; Bernard, E.; von Berkel, M.; Funaba, H.; Huang, X. L.; T., Ii; Ido, T.; Ikeda, K.; Kamio, S.; Kumazawa, R.; Kobayashi, T.; Moon, C.; Muto, S.; Miyazawa, J.; Ming, T.; Nakamura, Y.; Nishimura, S.; Ogawa, K.; Ozaki, T.; Oishi, T.; Ohno, M.; Pandya, S.; Shimizu, A.; Seki, R.; Sano, R.; Saito, K.; Sakaue, H.; Takemura, Y.; Tsumori, K.; Tamura, N.; Tanaka, H.; Toi, K.; Wieland, B.; Yamada, I.; Yasuhara, R.; Zhang, H.; Kaneko, O.; Komori, A.; Collaborators

2015-10-01

The progress in the understanding of the physics and the concurrent parameter extension in the large helical device since the last IAEA-FEC, in 2012 (Kaneko O et al 2013 Nucl. Fusion 53 095024), is reviewed. Plasma with high ion and electron temperatures (Ti(0) ˜ Te(0) ˜ 6 keV) with simultaneous ion and electron internal transport barriers is obtained by controlling recycling and heating deposition. A sign flip of the nondiffusive term of impurity/momentum transport (residual stress and convection flow) is observed, which is associated with the formation of a transport barrier. The impact of the topology of three-dimensional magnetic fields (stochastic magnetic fields and magnetic islands) on heat momentum, particle/impurity transport and magnetohydrodynamic stability is also discussed. In the steady state operation, a 48 min discharge with a line-averaged electron density of 1 × 1019 m-3 and with high electron and ion temperatures (Ti(0) ˜ Te(0) ˜ 2 keV), resulting in 3.36 GJ of input energy, is achieved.

The Helicobacter pylori duodenal ulcer promoting gene, dupA in China.

PubMed

Zhang, Zhiyu; Zheng, Qing; Chen, Xiaoyu; Xiao, Shudong; Liu, Wenzhong; Lu, Hong

2008-10-25

The prevalence of H. pylori is as high as 60-70% in Chinese population. Although duodenal ulcer and gastric cancer are both caused by H. pylori, they are at opposite ends of the spectrum and as such are considered mutually exclusive. Duodenal ulcer promoting (dupA) gene was reported to be associated with duodenal ulcer development. The aim of this study was to determine the prevalence of dupA gene of Helicobacter pylori in patients with various gastroduodenal diseases and to explore the association between the gene and other virulence factors. H. pylori were isolated from gastric biopsies of patients with chronic gastritis, duodenal ulcer (DU), gastric ulcer (GU), or non-cardia gastric carcinoma. The dupA, cagA, vacA, iceA and babA2 genotypes were determined by polymerase chain reaction. Histological features of gastric mucosal biopsy specimens were graded based on the scoring system proposed by the updated Sydney system. IL-1beta polymorphism was investigated using restriction fragment length polymorphism. Isolates from 360 patients including 133 with chronic gastritis, 101 with DU, 47 with GU, and 79 with non-cardia gastric carcinoma were examined. The dupA gene was detected in 35.3% (127/360) and the prevalence DU patients was significantly greater than that in gastric cancer or GU patients (45.5% vs. 24.1% and 23.4%, P < 0.05). Patients infected with dupA-positive strains had higher scores for chronic inflammation compared to those with dupA-negative strains (2.36 vs. 2.24, p = 0.058). The presence of dupA was not associated with the cagA, vacA, iceA and babA 2 genotypes or with IL-1beta polymorphisms. In China the prevalence of dupA gene was highest in DU and inversely related to GU and gastric cancer.

The Helicobacter pylori duodenal ulcer promoting gene, dupA in China

PubMed Central

Zhang, Zhiyu; Zheng, Qing; Chen, Xiaoyu; Xiao, Shudong; Liu, Wenzhong; Lu, Hong

2008-01-01

Background The prevalence of H. pylori is as high as 60–70% in Chinese population. Although duodenal ulcer and gastric cancer are both caused by H. pylori, they are at opposite ends of the spectrum and as such are considered mutually exclusive. Duodenal ulcer promoting (dupA) gene was reported to be associated with duodenal ulcer development. The aim of this study was to determine the prevalence of dupA gene of Helicobacter pylori in patients with various gastroduodenal diseases and to explore the association between the gene and other virulence factors. Methods H. pylori were isolated from gastric biopsies of patients with chronic gastritis, duodenal ulcer (DU), gastric ulcer (GU), or non-cardia gastric carcinoma. The dupA, cagA, vacA, iceA and babA2 genotypes were determined by polymerase chain reaction. Histological features of gastric mucosal biopsy specimens were graded based on the scoring system proposed by the updated Sydney system. IL-1β polymorphism was investigated using restriction fragment length polymorphism. Results Isolates from 360 patients including 133 with chronic gastritis, 101 with DU, 47 with GU, and 79 with non-cardia gastric carcinoma were examined. The dupA gene was detected in 35.3% (127/360) and the prevalence DU patients was significantly greater than that in gastric cancer or GU patients (45.5% vs. 24.1% and 23.4%, P < 0.05). Patients infected with dupA-positive strains had higher scores for chronic inflammation compared to those with dupA-negative strains (2.36 vs. 2.24, p = 0.058). The presence of dupA was not associated with the cagA, vacA, iceA and babA 2 genotypes or with IL-1β polymorphisms. Conclusion In China the prevalence of dupA gene was highest in DU and inversely related to GU and gastric cancer. PMID:18950522

Multiplex-PCR-Based Screening and Computational Modeling of Virulence Factors and T-Cell Mediated Immunity in Helicobacter pylori Infections for Accurate Clinical Diagnosis

PubMed Central

Oktem-Okullu, Sinem; Tiftikci, Arzu; Saruc, Murat; Cicek, Bahattin; Vardareli, Eser; Tozun, Nurdan; Kocagoz, Tanil; Sezerman, Ugur; Yavuz, Ahmet Sinan; Sayi-Yazgan, Ayca

2015-01-01

The outcome of H. pylori infection is closely related with bacteria's virulence factors and host immune response. The association between T cells and H. pylori infection has been identified, but the effects of the nine major H. pylori specific virulence factors; cagA, vacA, oipA, babA, hpaA, napA, dupA, ureA, ureB on T cell response in H. pylori infected patients have not been fully elucidated. We developed a multiplex- PCR assay to detect nine H. pylori virulence genes with in a three PCR reactions. Also, the expression levels of Th1, Th17 and Treg cell specific cytokines and transcription factors were detected by using qRT-PCR assays. Furthermore, a novel expert derived model is developed to identify set of factors and rules that can distinguish the ulcer patients from gastritis patients. Within all virulence factors that we tested, we identified a correlation between the presence of napA virulence gene and ulcer disease as a first data. Additionally, a positive correlation between the H. pylori dupA virulence factor and IFN-γ, and H. pylori babA virulence factor and IL-17 was detected in gastritis and ulcer patients respectively. By using computer-based models, clinical outcomes of a patients infected with H. pylori can be predicted by screening the patient's H. pylori vacA m1/m2, ureA and cagA status and IFN-γ (Th1), IL-17 (Th17), and FOXP3 (Treg) expression levels. Herein, we report, for the first time, the relationship between H. pylori virulence factors and host immune responses for diagnostic prediction of gastric diseases using computer—based models. PMID:26287606

Random matrix theory of singular values of rectangular complex matrices I: Exact formula of one-body distribution function in fixed-trace ensemble

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adachi, Satoshi; Toda, Mikito; Kubotani, Hiroto

The fixed-trace ensemble of random complex matrices is the fundamental model that excellently describes the entanglement in the quantum states realized in a coupled system by its strongly chaotic dynamical evolution [see H. Kubotani, S. Adachi, M. Toda, Phys. Rev. Lett. 100 (2008) 240501]. The fixed-trace ensemble fully takes into account the conservation of probability for quantum states. The present paper derives for the first time the exact analytical formula of the one-body distribution function of singular values of random complex matrices in the fixed-trace ensemble. The distribution function of singular values (i.e. Schmidt eigenvalues) of a quantum state ismore » so important since it describes characteristics of the entanglement in the state. The derivation of the exact analytical formula utilizes two recent achievements in mathematics, which appeared in 1990s. The first is the Kaneko theory that extends the famous Selberg integral by inserting a hypergeometric type weight factor into the integrand to obtain an analytical formula for the extended integral. The second is the Petkovsek-Wilf-Zeilberger theory that calculates definite hypergeometric sums in a closed form.« less

Spectral Dissimilarities Between AZULENE(C10H_8) and NAPHTHALENE(C10H_8)

NASA Astrophysics Data System (ADS)

Baba, Masaaki

2010-06-01

Polycyclic aromatic hydrocarbons (PAHs) are of great interest in the molecular structure and excited-state dynamics, and there have been extensive spectroscopic and theoretical studies. Azulene and naphthalene are bicyclic aromatic hydrocarbons composed of odd- and even-membered rings, respectively. First, they were discriminated by a theory of mutual polarizability. Naphthalene is an alternant hydrocarbon, but azulene is not. In contrast, spectral resemblances were found by John Platt et al., and were explained by their simple model of molecular orbital. However, the absorption and emission feature of the S_1 and S_2 states is completely different each other. We have investigated each rotational and vibrational structures, and radiative and nonradiative processes by means of high-resolution spectroscopy and ab initio calculation. The equilibrium structures in the S_0, S_1, and S_2 states are similar. This small structural change upon electronic excitation is common to PAH molecules composed of six-membered rings. The fluorescence quantum yield is high because radiationless transitions such as intersystem crossing (ISC) to the triplet state and internal conversion (IC) to the S_0 state are very slow in the S_1 state. In contrast, the S_1 state of azulene is nonfluorescent and the S_1 ← S_0 excitation energy is abnormally small. We consider that the potential energy curve of a b_2 vibration is shallower in the S_1 state, and therefore the vibronic coupling with the S_0 state is strong to enhance the IC process remarkably. This situation is, of course, due to its peculiar characteristics of odd-membered rings and molecular symmetry, which are completely different from the naphthalene molecule. C. A. Coulson and H. C. Longuet-Higgins, Proc. Roy. Soc. A, 191, 39 (1947) D. E. Mann, J. R. Platt, and H. B. Klevens, J. Chem. Phys., 17, 481 (1949) Y. Semba, M. Baba, et al., J. Chem. Phys., 131, 024303 (2009) K. Yoshida, M. Baba, et al., J. Chem. Phys., 130, 194304 (2009)

A novel robotic surgical technique for thyroid surgery: bilateral axillary approach (BAA).

PubMed

Woo, Jung-Woo; Kim, Seo Ki; Park, Inhye; Choe, Jun Ho; Kim, Jung-Han; Kim, Jee Soo

2017-02-01

Bilateral axillo-breast approach (BABA) robotic thyroidectomy (RT) is proven to be a feasible method for the treatment of well-differentiated thyroid cancers in terms of oncology as well as cosmesis. However, BABA RT causes postoperative sternal discomfort and needs an incision over the nipple areolar area. Here, we suggest a novel robotic surgical technique for thyroid surgery that does not need a breast incision-bilateral axillary approach (BAA). We recruited 51 patients who were willing to undergo the novel BAA robotic thyroid surgery. We performed a propensity score-matched analysis to compare the BAA robotic thyroid surgery group (BAA group) with the conventional open thyroid surgery group (open group). Mean operation time in the BAA group (129.7 min) was significantly longer than that in the open group (103.1 min) (p < 0.001). However, no significant differences in the mean number of metastatic lymph nodes (LNs), mean number of retrieved LNs, vocal cord palsy, hypoparathyroidism, and mean stimulated thyroglobulin level were observed between the two groups. There was no case of postoperative bleeding or chyle leak. Of the 51 patients who had undergone the BAA procedure, 27 patients answered the questionnaire. The mean scale, ranging from 0 to 10, at postoperative 1 day/2 weeks was as follows: voice change score, 3.0/1.6; swallowing difficulty score, 4.0/2.0; anterior neck pain score, 4.6/3.6; anterior neck numbness score, 5.4/4.3; right chest pain score, 3.8/2.1; left chest pain score, 3.6/2.3; right chest numbness score, 3.2/2.8; left chest numbness score, 2.4/2.7; right breast pain score, 0.9/0; left breast pain score, 1.2/0; right breast numbness score, 1.7/0; and left breast numbness score, 2.6/0, respectively. BAA robotic thyroid surgery is a novel, safe, and feasible oncoplastic method, especially for patients who have fear of procedures around the nipple areolar complex.

Postnatal Passive Immunization of Neonatal Macaques with a Triple Combination of Human Monoclonal Antibodies against Oral Simian-Human Immunodeficiency Virus Challenge

PubMed Central

Hofmann-Lehmann, Regina; Vlasak, Josef; Rasmussen, Robert A.; Smith, Beverly A.; Baba, Timothy W.; Liska, Vladimir; Ferrantelli, Flavia; Montefiori, David C.; McClure, Harold M.; Anderson, Daniel C.; Bernacky, Bruce J.; Rizvi, Tahir A.; Schmidt, Russell; Hill, Lori R.; Keeling, Michale E.; Katinger, Hermann; Stiegler, Gabriela; Cavacini, Lisa A.; Posner, Marshall R.; Chou, Ting-Chao; Andersen, Janet; Ruprecht, Ruth M.

2001-01-01

To develop prophylaxis against mother-to-child human immunodeficiency virus (HIV) transmission, we established a simian-human immunodeficiency virus (SHIV) infection model in neonatal macaques that mimics intrapartum mucosal virus exposure (T. W. Baba et al., AIDS Res. Hum. Retroviruses 10:351–357, 1994). Using this model, neonates were protected from mucosal SHIV-vpu+ challenge by pre- and postnatal treatment with a combination of three human neutralizing monoclonal antibodies (MAbs), F105, 2G12, and 2F5 (Baba et al., Nat. Med. 6:200–206, 2000). In the present study, we used this MAb combination only postnatally, thereby significantly reducing the quantity of antibodies necessary and rendering their potential use in humans more practical. We protected two neonates with this regimen against oral SHIV-vpu+ challenge, while four untreated control animals became persistently infected. Thus, synergistic MAbs protect when used as immunoprophylaxis without the prenatal dose. We then determined in vitro the optimal MAb combination against the more pathogenic SHIV89.6P, a chimeric virus encoding env of the primary HIV89.6. Remarkably, the most potent combination included IgG1b12, which alone does not neutralize SHIV89.6P. We administered the combination of MAbs IgG1b12, 2F5, and 2G12 postnatally to four neonates. One of the four infants remained uninfected after oral challenge with SHIV89.6P, and two infants had no or a delayed CD4+ T-cell decline. In contrast, all control animals had dramatic drops in their CD4+ T cells by 2 weeks postexposure. We conclude that our triple MAb combination partially protected against mucosal challenge with the highly pathogenic SHIV89.6P. Thus, combination immunoprophylaxis with passively administered synergistic human MAbs may play a role in the clinical prevention of mother-to-infant transmission of HIV type 1. PMID:11462019

(High temperature flaw assessment procedure)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ruggles, M.B.

1990-06-01

The Electric Power Research Institute (EPRI), the Japanese Central Research Institute of Electric Power Industry (CRIEPI), and the British Nuclear Electric (NE) are conducting joint studies in the field of liquid metal reactor development. The traveler is currently responsible for the EPRI/CRIEPI/NE High-Temperature Flaw Assessment Procedure activities at the Oak Ridge National Laboratory (ORNL). The traveler participated, on behalf of EPRI, in the EPRI/CRIEPI/NE specialist working session, the purpose of which was to produce the interim High-Temperature Flaw Assessment guide. The traveler also led discussions on the High-Temperature Flaw Assessment Procedure Phase 2 program plan, and on the plan formore » a new joint EPRI/CRIEPI/NE study in Inelastic Behavior and Failure Criteria for Modified 9Cr--1Mo Steel. The traveler visited Profs. K. Ikegami, Y. Asada, N. Ohno, T. Inoue, and K. Kaneko at the Tokyo Institute of Technology, the University of Tokyo, Nagoya University, Kyoto University, and Science University of Tokyo, respectively to hold discussions on research advances in the areas of high-temperature fracture mechanics, inelastic material behavior, and constitutive modeling. In addition, the traveler visited Kajima Corp. and Ohbayashi Corp. Technical Research Institute to collect information on research in the area of fiber reinforced concrete.« less

Previously undocumented diversity and abundance of cryptic species: a phylogenetic analysis of Indo-Pacific Arminidae Rafinesque, 1814 (Mollusca: Nudibranchia) with descriptions of 20 new species of Dermatobranchus

PubMed Central

Gosliner, Terrence M; Fahey, Shireen J

2011-01-01

The phylogenetic relationships amongst the Arminidae were analysed based upon morphological characters of 58 presently described species or nudibranchs, including 35 previously described Arminidae and 20 new species of Dermatobranchus. From the literature review and anatomical examinations, 43 characters were considered for 78 taxa. These characters were polarized using Berthella canariensis as the outgroup taxon and the type species of several other genera identified from recent publications. The resulting phylogeny supports the monophyly of Arminidae, Dermatobranchus, Doridina, and Proctonotidae. The paraphyly of the Arminina is further demonstrated in this study. Two previously described, but poorly known, species of Indo-Pacific Armina are redescribed, Armina magna Baba, 1955 and Armina paucifoliata Baba, 1955. The anatomy and taxonomic status of nine previously described species of Dermatobranchus were examined in this study. The anatomy of Dermatobranchus pustulosus (van Hasselt, 1824) has been overlooked since Bergh (1888) illustrated the radula of van Hasselt's specimen. It is redescribed and its range is extended to several new localities in the western Pacific. Dermatobranchus pulcherrimus Miller & Willan, 1986 is considered here as a new synonym of Dermatobranchus rubidus (Gould, 1852). The following 20 species of Dermatobranchus are new and are described in the present paper: Dermatobranchus albineus sp. nov., Dermatobranchus arminus sp. nov., Dermatobranchus caesitius sp. nov., Dermatobranchus caeruleomaculatus sp. nov., Dermatobranchus cymatilis sp. nov., Dermatobranchus dendonephthyphagus sp. nov., Dermatobranchus diagonalis sp. nov., Dermatobranchus earlei sp. nov., Dermatobranchus fasciatus sp. nov., Dermatobranchus funiculus sp. nov., Dermatobranchus kalyptos sp. nov., Dermatobranchus kokonas sp. nov., Dermatobranchus leoni sp. nov., Dermatobranchus microphallus sp. nov., Dermatobranchus oculus sp. nov., Dermatobranchus phyllodes sp. nov

A thermophilic cyanobacterium Synechococcus elongatus has three different Class I prenyltransferase genes.

PubMed

Ohto, C; Ishida, C; Nakane, H; Muramatsu, M; Nishino, T; Obata, S

1999-05-01

Prenyltransferases (prenyl diphosphate synthases), which are a broad group of enzymes that catalyze the consecutive condensation of homoallylic diphosphate of isopentenyl diphosphates (IPP, C5) with allylic diphosphates to synthesize prenyl diphosphates of various chain lengths, have highly conserved regions in their amino acid sequences. Based on the above information, three prenyltransferase homologue genes were cloned from a thermophilic cyanobacterium, Synechococcus elongatus. Through analyses of the reaction products of the enzymes encoded by these genes, it was revealed that one encodes a thermolabile geranylgeranyl (C20) diphosphate synthase, another encodes a farnesyl (C15) diphosphate synthase whose optimal reaction temperature is 60 degrees C, and the third one encodes a prenyltransferase whose optimal reaction temperature is 75 degrees C. The last enzyme could catalyze the synthesis of five prenyl diphosphates of farnesyl, geranylgeranyl, geranylfarnesyl (C25), hexaprenyl (C30), and heptaprenyl (C35) diphosphates from dimethylallyl (C5) diphosphate, geranyl (C10) diphosphate, or farnesyl diphosphate as the allylic substrates. The product specificity of this novel kind of enzyme varied according to the ratio of the allylic and homoallylic substrates. The situations of these three S. elongatus enzymes in a phylogenetic tree of prenyltransferases are discussed in comparison with a mesophilic cyanobacterium of Synechocystis PCC6803, whose complete genome has been reported by Kaneko et al. (1996).

Squat lobsters (Crustacea: Anomura) from Mauritanian waters (West Africa), with the description of a new species of Munidopsis.

PubMed

De Matos-Pita, Susana S; Ramil, Fran

2014-02-20

This paper is the result of the study of a squat lobsters collection obtained along the Mauritanian coast, between 91 and 1867 m depth, during the 'MAURIT' surveys carried out in the period from 2007 to 2010. Eumunida bella de Saint Laurent & Macpherson, 1990 (Chirostyloidea) and six species of Munida and Munidopsis (Galatheoidea) are reported in the present work.A new species, Munidopsis anaramosae n. sp. collected off northwestern Banc d'Arguin at 1000-1012 m depth, is described and illustrated. The presence of an eyespine that arises distally from the middle end of the cornea, walking legs merus spinose on dorsal and ventral margins and cheliped merus ventrally unarmed distinguish it from related species. Munida chunii Balss, 1913 is redescribed here and the new records of Munida guineae Miyake & Baba, 1970, M. speciosa von Martens, 1878 and Munidopsis chunii Balss, 1913 extend their geographical distribution northwards, and in the case of the last species, increase its bathymetric range.

Probing intermolecular interactions in a diethylcarbamazine citrate salt by fast MAS 1H solid-state NMR spectroscopy and GIPAW calculations.

PubMed

Venâncio, Tiago; Oliveira, Lyege Magalhaes; Ellena, Javier; Boechat, Nubia; Brown, Steven P

2017-10-01

Fast magic-angle spinning (MAS) NMR is used to probe intermolecular interactions in a diethylcarbamazine salt, that is widely used as a treatment against adult worms of Wuchereria bancrofti which cause a common disease in tropical countries named filariasis. Specifically, a dihydrogen citrate salt that has improved thermal stability and solubility as compared to the free form is studied. One-dimensional 1 H, 13 C and 15 N and two-dimensional 1 H- 13 C and 14 N- 1 H heteronuclear correlation NMR experiments under moderate and fast MAS together with GIPAW (CASTEP) calculations enable the assignment of the 1 H, 13 C and 14 N/ 15 N resonances. A two-dimensional 1 H- 1 H double-quantum (DQ) -single-quantum (SQ) MAS spectrum recorded with BaBa recoupling at 60kHz MAS identifies specific proton-proton proximities associated with citrate-citrate and citrate-diethylcarbamazine intermolecular interactions. Copyright © 2017 Elsevier Inc. All rights reserved.

Deep structure of the Tristan-Gough plume revealed by geoid anomalies

NASA Astrophysics Data System (ADS)

Maia, M.; Flamme, J.; Cadio, C.; Lalancette, M. F.; Metivier, L.; Pajot-Métivier, G.; Diament, M.

2017-12-01

The origin of the hotspot Tristan da Cunha located at the southwestern end of Walvis Ridge in the Atlantic Ocean is still a controversial topic. We especially question on the nature of the involved geodynamical processes and on their origin depth. The latest results based on local seismic and magnetic data (Schlömer et al., 2016; Baba et al., 2016; Geissler et al., 2016) suggest the existence of a plume coming from the mid-mantle in the southwest of the archipelago. Here we give a regional view of mantle dynamics patterns in the area by using the high-quality satellite geoid data. To extract the mantle signature, we estimate the crustal and lithospheric signals of the ocean basin and South American and African continents, which contribute to mid- and long-wavelengths in the total geoid. We pay particular attention to the modeling of continental margins and their effects on the residual geoid signal. In addition, we explore a large density values set derived from petrological and geochemical studies in the calculation of the lithospheric geoid model. After subtracting the lithospheric signature to the EGM2008 geoid, we apply a multi-scale analysis, which unfolds the different components of the geoid residual signal. The analysis underlines a set of positive anomalies at 200-400 km in the study area, notably in north and west of Tristan de Cunha, and a positive anomaly at 700-1100 km scale in the southwest of the archipelago. These patterns do not change by using different lithospheric geoid models, which allow us to evaluate the reliability of the residual geoid anomalies. These results indicate the existence of small-scale density anomalies in the upper mantle and a larger scale density anomaly in the mid-mantle. Our study suggests that a large dome toped by plume clusters could be a good candidate to explain the volcanism of Tristan da Cunha.Schlömer et al., 2016 Hunting for the Tristan mantle plume..., EPSL, http://dx.doi.org/10.1016/j.epsl.2016.12.028Baba et

Cloning of apg-2 encoding a novel member of heat shock protein 110 family.

PubMed

Kaneko, Y; Kimura, T; Kishishita, M; Noda, Y; Fujita, J

1997-04-11

Chinese hamster heat shock protein 110-encoding gene (hsp110), mouse apg-1 and human hsp70RY are structurally related genes, with the first two encoding about 110-kDa HSPs [Yoon et al. (1995) J. Biol. Chem. 270, 15725-15733; Kaneko et al. (1997) J. Biol. Chem., in press; Fathallah et al. (1993) J. Immunol. 151, 810-813]. Using apg-1 cDNA as a probe, we isolated a novel cDNA, apg-2 from a mouse testis cDNA library, which was highly homologous to human hsp70RY. However, the predicted amino acid (aa) sequence of APG-2 was longer (841 aa) than that of HSP70RY (701 aa) and comparable to those of HSP110 and APG-1. Northern blot analysis revealed that the expression of apg-2 transcripts was ubiquitous in various mouse tissues, and most abundant in the testis and ovary. While induction of hsp70 transcripts was observed in mouse TAMA26 Sertoli cells and NIH/3T3 fibroblasts on temperature shift from 37 degrees C to 42 degrees C (traditional heat shock) or from 32 degrees C to 39 degrees C, apg-2 transcripts were not induced under either condition. These results suggest that apg-2 is an isoform of mouse homolog of hsp70RY, but that it belongs to the hsp110 family instead of hsp70 family, and that it plays a role under non-stress conditions.

Motivating women. Bangladesh.

PubMed

1996-08-01

The Integrated Family Development Program (IFDP) in Bangladesh is expanding from the original project areas in Panchdona Union and Dhalian Union into four neighboring unions under the initiative of the Family Planning Association of Bangladesh (FPAB). The JOICFP-executed project entered its second cycle this year as part of the UNFPA-supported regional Capacity Building for Sustainable Community-based Reproductive Health/Family Planning (FP) Project Emphasizing Quality of Care. The community-based project has won wide acceptance from people at the grass roots who have helped fuel its expansion into other villages. In particular, villagers have welcomed the comprehensive approach of the project which integrates a range of components such as reproductive health including FP/maternal and child health (MCH), income-generating activities, skills and literacy education for women and children and primary health care including parasite control. The success of the project also convinced the Japanese Embassy in Bangladesh to extend funding under the Japanese government's Grant Assistance for Grass Roots Cooperation Projects. With the funds, FPAB will establish a Women's Multipurpose Training Center in Panchdona Union. The sum of US$68,157 was officially handed over to FPAB on March 29 by Japanese Ambassador Yoshikazu Kaneko. The center, which is to open within this year, will contribute to improving reproductive health and promoting the empowerment of women. Once completed, it will be used for such activities as training in health care, literacy and skills for income generation for women's empowerment. full text

Subsurface Biodegradation in a Fractured Basement Reservoir, Shropshire, UK

NASA Astrophysics Data System (ADS)

Parnell, John; Baba, Mas'ud; Bowden, Stephen; Muirhead, David

2017-04-01

Subsurface Biodegradation in a Fractured Basement Reservoir, Shropshire, UK. John Parnell, Mas'ud Baba, Stephen Bowden, David Muirhead Subsurface biodegradation in current oil reservoirs is well established, but there are few examples of fossil subsurface degradation. Biomarker compositions of viscous and solid oil residues ('bitumen') in fractured Precambrian and other basement rocks below the Carboniferous cover in Shropshire, UK, show that they are variably biodegraded. High levels of 25-norhopanes imply that degradation occurred in the subsurface. Lower levels of 25-norhopanes occur in active seepages. Liquid oil trapped in fluid inclusions in mineral veins in the fractured basement confirm that the oil was emplaced fresh before subsurface degradation. A Triassic age for the veins implies a 200 million year history of hydrocarbon migration in the basement rocks. The data record microbial colonization of a fractured basement reservoir, and add to evidence in modern basement aquifers for microbial activity in deep fracture systems. Buried basement highs may be especially favourable to colonization, through channelling fluid flow to shallow depths and relatively low temperatures

Internal Energy Distribution in Sympathetically Cooled Molecular Ions

NASA Astrophysics Data System (ADS)

Thompson, Robert I.; Fisher, Amy; Harmon, Thomas; Winslade, Clayton; Ahmadi, Nasser

2002-05-01

Over the past year a research program at the University of Calgary has begun looking at the distribution of energy in the internal degrees of freedom (vibrational and rotational) of trapped and sympathetically cooled molecular ions. Ion traps are capable of holding mixed samples of charged atoms and molecules simultaneously. Atomic ions in the trapped cloud can be laser cooled by traditional techniques. The molecular ions are not directly laser cooled, but all of the trapped particles are charged so they interact strongly through Coulomb forces. It has been experimentally demonstrated that the external or translational degrees of freedom of the non-laser-cooled species are significantly lowered through this interaction (e.g. [1]). However, there is little known about the energy distribution in the in the internal degrees of freedom. This poster will outline the results of our theoretical work, as well as the technical design, construction, and initial work in the laboratory. [1] T. Baba and I. Waki, Jpn. J. Appl. Phys. 35, L1134 (1996).

Combination of peracetic acid and ultrasound reduces Salmonella Typhimurium on fresh lettuce (Lactuca sativa L. var. crispa).

PubMed

Silveira, Luiza Oliveira; do Rosário, Denes Kaic Alves; Giori, Ana Carolina Garcia; Oliveira, Syllas Borburema Silva; da Silva Mutz, Yhan; Marques, Clara Suprani; Coelho, Jussara Moreira; Bernardes, Patrícia Campos

2018-04-01

Salmonella outbreaks related to fruits and vegetables have been reported being lettuce one of the most contaminated. Peracetic acid (PA) at 50 mg/L, sodium dichloroisocyanurate (SD) at 100 mg/L, and the combination of SD at 100 mg/L and babaçu coconut ( Attalea speciosa ) oil detergent at 100 mg/L were applied to fresh lettuce. Natural contaminant microbiota, physicochemical characteristics, and sensory attributes were evaluated. PA and SD reduced mesophilic aerobic counts by 2.1 and 1.5 log cfu/g, respectively. The most efficient treatment in reducing natural microbiota (i.e., PA) was applied alone and in combination with ultrasound (US). It reduced Salmonella enterica Typhimurium counts to undetectable levels (< 1 log cfu/g). US further reduced S. Typhimurium counts by 0.6 log cfu/g in relation to PA, treatment which lessened the pH but increased the titratable acidity of lettuce, but did not cause total color difference. Therefore, the combination of PA and US holds a potential industrial application for sanitization purposes.

VizieR Online Data Catalog: Metal-poor stars from SDSS/SEGUE. I Unevolved stars (Matsuno+, 2017)

NASA Astrophysics Data System (ADS)

Matsuno, T.; Aoki, W.; Beers, T. C.; Lee, Y. S.; Honda, S.

2017-10-01

The targets in our present study are selected from Aoki et al. 2013 (Cat. J/AJ/145/13; Paper I). We have obtained new, higher-quality spectra for eight targets with the High Dispersion Spectrograph on the Subaru Telescope. The spectral resolution is R=60000 with 2*2 CCD binning; the wavelength coverage is 4000-6000Å. We also analyze the spectra of two bright EMP main-sequence turnoff stars, G64-12 ([Fe/H]=-3.38) and LP815-43 ([Fe/H]=-2.96). The spectrum of G64-12 was taken on 2002 December 22 with R~90000 and S/N~650 at 6708Å (S/N~454 at 4880Å) (Aoki et al. 2009ApJ...698.1803A). The spectrum of LP815-43, which was taken from the Subaru-Mitaka-Okayama-Kiso Archive (SMOKA; Baba et al. 2002ASPC..281..298B), was originally obtained on 2005 May 18 with R~90000 and S/N~260 at 6708Å (S/N~142 at 4880Å). (3 data files).

Activities for the Promotion of Gender Equality in Japan—Japan Society of Applied Physics

NASA Astrophysics Data System (ADS)

Kodate, Kashiko; Tanaka, Kazuo

2005-10-01

Since 1946, the Japan Society of Applied Physics (JSAP) has strived to promote research and development in applied physics for benefits beyond national boundaries. Activities of JSAP involve multidisciplinary fields, from physics and engineering to life sciences. Of its 23,000 members, 48% are from industry, 29% from academia, and about 7% from semi-autonomous national research laboratories. Its large industrial membership is one of the distinctive features of JSAP. In preparation for the First IUPAP International Conference on Women in Physics (Paris, 2002), JSAP members took the first step under the strong leadership of then-JSAP President Toshio Goto, setting up the Committee for the Promotion Equal Participation of Men and Women in Science and Technology. Equality rather than women's advancement is highlighted to further development in science and technology. Attention is also paid to balancing the number of researchers from different age groups and affiliations. The committee has 22 members: 12 female and 10 male; 7 from corporations, 12 from universities, and 3 from semi-autonomous national research institutes. Its main activities are to organize symposia and meetings, conduct surveys among JSAP members, and provide child-care facilities at meetings and conferences. In 2002 the Japan Physics Society and the Chemical Society of Japan jointly created the Japan Inter-Society Liaison Association for the Promotion of Equal Participation of Men and Women in Science and Engineering. Membership has grown to 44 societies (of which 19 are observers) ranging from mathematics, information, and life sciences to civil engineering. Joint activities across sectors and empower the whole. The Gender Equality Bureau in the Cabinet Office recently launched a large-scale project called "Challenge Campaign" to encourage girls to major in natural science and engineering, which JSAP is co-sponsoring.

Dominant-Negative Inhibition of Prion Formation Diminished by Deletion Mutagenesis of the Prion Protein

PubMed Central

Zulianello, Laurence; Kaneko, Kiyotoshi; Scott, Michael; Erpel, Susanne; Han, Dong; Cohen, Fred E.; Prusiner, Stanley B.

2000-01-01

Polymorphic basic residues near the C terminus of the prion protein (PrP) in humans and sheep appear to protect against prion disease. In heterozygotes, inhibition of prion formation appears to be dominant negative and has been simulated in cultured cells persistently infected with scrapie prions. The results of nuclear magnetic resonance and mutagenesis studies indicate that specific substitutions at the C-terminal residues 167, 171, 214, and 218 of PrPC act as dominant-negative, inhibitors of PrPSc formation (K. Kaneko et al., Proc. Natl. Acad. Sci. USA 94:10069–10074, 1997). Trafficking of substituted PrPC to caveaola-like domains or rafts by the glycolipid anchor was required for the dominant-negative phenotype; interestingly, amino acid replacements at multiple sites were less effective than single-residue substitutions. To elucidate which domains of PrPC are responsible for dominant-negative inhibition of PrPSc formation, we analyzed whether N-terminally truncated PrP(Q218K) molecules exhibited dominant-negative effects in the conversion of full-length PrPC to PrPSc. We found that the C-terminal domain of PrP is not sufficient to impede the conversion of the full-length PrPC molecule and that N-terminally truncated molecules (with residues 23 to 88 and 23 to 120 deleted) have reduced dominant-negative activity. Whether the N-terminal region of PrP acts by stabilizing the C-terminal domain of the molecule or by modulating the binding of PrPC to an auxiliary molecule that participates in PrPSc formation remains to be established. PMID:10756050

A Novel Assay for Easy and Rapid Quantification of Helicobacter pylori Adhesion.

PubMed

Skindersoe, Mette E; Rasmussen, Lone; Andersen, Leif P; Krogfelt, Karen A

2015-06-01

Reducing adhesion of Helicobacter pylori to gastric epithelial cells could be a new way to counteract infections with this organism. We here present a novel method for quantification of Helicobacter pylori adhesion to cells. Helicobacter pylori is allowed to adhere to AGS or MKN45g cells in a 96-well microtiter plate. Then wells are added saponin, which lyses the cells without affecting the bacteria. After addition of alamarBlue(®) (resazurin) and 1- to 2-hour incubation, fluorescence measurements can be used to quantify the number of adherent bacteria. By use of the method, we demonstrate that adhesion of both a sabA and babA deletion mutant of H. pylori is significantly reduced compared to the wild type. The method offers a number of applications and may be used to compare the adherence potential of different strains of H. pylori to either cells or different materials or to screen for potential anti-adhesive compounds. The results presented here suggest that this easy and reproducible assay is well suited for quantitative investigation of H. pylori adhesion. © 2015 John Wiley & Sons Ltd.

Effects of strategic versus tactical instructions on adaptation to changing contingencies in children with adhd.

PubMed

Bicard, David E; Neef, Nancy A

2002-01-01

This study examined the effects of two types of instructions on the academic responding of 4 children with attention deficit hyperactivity disorder. Tactical instructions specified how to distribute responding between two concurrently available sets of math problems associated with different variable-interval schedules of reinforcement. Strategic instructions provided a strategy to determine the best way to distribute responding. Instruction conditions were counterbalanced in an ABAB/BABA reversal design nested within a multiple baseline across participants design. Experimental sessions consisted of a learning session in which participants were provided with one type of instruction, followed by a test session in which no instruction was provided. The schedules of reinforcement were subsequently reversed during test sessions. When learning and test schedules were identical, the responding of all 4 participants closely matched the reinforcement schedules. When tactical instructions were provided and schedules were subsequently changed, responding often remained under the control of the instructions. When strategic instructions were provided, responding more quickly adapted to the changed contingencies. Analysis of postsession verbal reports indicated correspondence between the participants' verbal descriptions (whether accurate or inaccurate) and their nonverbal patterns of responding.

Genetic battle between Helicobacter pylori and humans. The mechanism underlying homologous recombination in bacteria, which can infect human cells.

PubMed

Hanada, Katsuhiro; Yamaoka, Yoshio

2014-10-01

Helicobacter pylori is a gram-negative pathogenic bacterium that colonises the human stomach. The chronic infection it causes results in peptic ulcers and gastric cancers. H. pylori can easily establish a chronic infection even if the immune system attacks this pathogen with oxidative stress agents and immunoglobulins. This is attributed to bacterial defence mechanisms against these stresses. As a defence mechanism against oxidative stresses, in bacterial genomes, homologous recombination can act as a repair pathway of DNA's double-strand breaks (DSBs). Moreover, homologous recombination is also involved in the antigenic variation in H. pylori. Gene conversion alters genomic structures of babA and babB (encoding outer membrane proteins), resulting in escape from immunoglobulin attacks. Thus, homologous recombination in bacteria plays an important role in the maintenance of a chronic infection. In addition, H. pylori infection causes DSBs in human cells. Homologous recombination is also involved in the repair of DSBs in human cells. In this review, we describe the roles of homologous recombination with an emphasis on the maintenance of a chronic infection. Copyright © 2014 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Helicobacter pylori and non-malignant diseases.

PubMed

Matysiak-Budnik, Tamara; Laszewicz, Wiktor; Lamarque, Dominique; Chaussade, Stanislas

2006-10-01

The prevalence of Helicobacter pylori-associated peptic ulcers, in particular duodenal ulcers, is decreasing following decreasing prevalence of H. pylori infection, while the frequency of non-steroidal anti-inflammatory drugs (NSAIDs)-induced and H. pylori-negative idiopathic ulcers is increasing. The incidence of bleeding ulcers has been stable during the last decades. Several putative H. pylori virulence genes, i.e., cag, vacA, babA, or dupA, as well as host-related genetic factors like IL-1beta and TNFalpha-gene polymorphism, have been proposed as risk factors for duodenal ulcer. H. pylori eradication may prevent NSAID complications, in particular, when it is performed before introduction of NSAIDs. There is a complex association between H. pylori and gastroesophageal reflux disease (GERD), and the impact of H. pylori eradication on the appearance of GERD symptoms depends on various host- and bacteria-related factors. Eradication of H. pylori in GERD is recommended in patients before instauration of a long-term PPI treatment to prevent the development of gastric atrophy. A small proportion (10%) of non-ulcer dyspepsia cases may be attributed to H. pylori and may benefit from eradication treatment. A test-and-treat strategy is more cost-effective than prompt endoscopy in the initial management of dyspepsia.

Fates of satellite ejecta in the Saturn system, II

NASA Astrophysics Data System (ADS)

Alvarellos, José Luis; Dobrovolskis, Anthony R.; Zahnle, Kevin J.; Hamill, Patrick; Dones, Luke; Robbins, Stuart

2017-03-01

We assess the fates of ejecta from the large craters Aeneas on Dione and Ali Baba on Enceladus (161 and 39 km in diameter, respectively), as well as that from Herschel (130 km in diameter) on Mimas. The ejecta are treated either as 'spalls' launched from hard surfaces, or as 'rubble' launched from a weak rubble pile regolith. Once in orbit we consider the ejecta as massless test particles subject to the gravity of Saturn and its classical satellites. The great majority of escaped ejecta get swept up by the source moons. The best fit to the ejecta population decay is a stretched exponential with exponent near 1/2 (Dobrovolskis et al., Icarus 188, 481-505, 2007). We bracket the characteristic ejecta sizes corresponding to Grady-Kipp fragments and spalls. Based on this and computed impact velocities and incidence angles, the resulting sesquinary craters, if they exist, should have diameters on the order of a few meters to a few km. The observed longitude distribution of small craters on Mimas along with the findings of Bierhaus et al. that small moons should not have a secondary crater population (Icarus 218, 602-621, 2012) suggest that the most likely place to find sesquinary craters in the Saturn system is the antapex of Mimas.

Raman spectroscopy of triolein under high pressures

NASA Astrophysics Data System (ADS)

Tefelski, D. B.; Jastrzębski, C.; Wierzbicki, M.; Siegoczyński, R. M.; Rostocki, A. J.; Wieja, K.; Kościesza, R.

2010-03-01

This article presents results of the high pressure Raman spectroscopy of triolein. Triolein, a triacylglyceride (TAG) of oleic acid, is an unsaturated fat, present in natural oils such as olive oil. As a basic food component and an energy storage molecule, it has considerable importance for food and fuel industries. To generate pressure in the experiment, we used a high-pressure cylindrical chamber with sapphire windows, presented in (R.M. Siegoczyński, R. Kościesza, D.B. Tefelski, and A. Kos, Molecular collapse - modification of the liquid structure induced by pressure in oleic acid, High Press. Res. 29 (2009), pp. 61-66). Pressure up to 750 MPa was applied. A Raman spectrometer in "macro"-configuration was employed. Raman spectroscopy provides information on changes of vibrational modes related to structural changes of triolein under pressure. Interesting changes in the triglyceride C‒H stretching region at 2650-3100 cm-1 were observed under high-pressures. Changes were also observed in the ester carbonyl (C˭ O) stretching region 1700-1780 cm-1 and the C‒C stretching region at 1050-1150 cm-1. The overall luminescence of the sample decreased under pressure, making it possible to set longer spectrum acquisition time and obtain more details of the spectrum. The registered changes suggest that the high-pressure solid phase of triolein is organized as β-polymorphic, as was reported in (C. Akita, T. Kawaguchi, and F. Kaneko, Structural study on polymorphism of cis-unsaturated triacylglycerol: Triolein, J. Phys. Chem. B 110 (2006), pp. 4346-4353; E. Da Silva and D. Rousseau, Molecular order and thermodynamics of the solid-liquid transition in triglycerides via Raman spectroscopy, Phys. Chem. Chem. Phys. 10 (2008), pp. 4606-4613) (with temperature-induced phase transitions). The research has shown that Raman spectroscopy in TAGs under pressure reveals useful information about its structural changes.

Dynamic Rupture Benchmarking of the ADER-DG Method

NASA Astrophysics Data System (ADS)

Gabriel, Alice; Pelties, Christian

2013-04-01

We will verify the arbitrary high-order derivative Discontinuous Galerkin (ADER-DG) method in various test cases of the 'SCEC/USGS Dynamic Earthquake Rupture Code Verification Exercise' benchmark suite (Harris et al. 2009). The ADER-DG scheme is able to solve the spontaneous rupture problem with high-order accuracy in space and time on three-dimensional unstructured tetrahedral meshes. Strong mesh coarsening or refinement at areas of interest can be applied to keep the computational costs feasible. Moreover, the method does not generate spurious high-frequency contributions in the slip rate spectra and therefore does not require any artificial damping as demonstrated in previous presentations and publications (Pelties et al. 2010 and 2012). We will show that the mentioned features hold also for more advanced setups as e.g. a branching fault system, heterogeneous background stresses and bimaterial faults. The advanced geometrical flexibility combined with an enhanced accuracy will make the ADER-DG method a useful tool to study earthquake dynamics on complex fault systems in realistic rheologies. References: Harris, R.A., M. Barall, R. Archuleta, B. Aagaard, J.-P. Ampuero, H. Bhat, V. Cruz-Atienza, L. Dalguer, P. Dawson, S. Day, B. Duan, E. Dunham, G. Ely, Y. Kaneko, Y. Kase, N. Lapusta, Y. Liu, S. Ma, D. Oglesby, K. Olsen, A. Pitarka, S. Song, and E. Templeton, The SCEC/USGS Dynamic Earthquake Rupture Code Verification Exercise, Seismological Research Letters, vol. 80, no. 1, pages 119-126, 2009 Pelties, C., J. de la Puente, and M. Kaeser, Dynamic Rupture Modeling in Three Dimensions on Unstructured Meshes Using a Discontinuous Galerkin Method, AGU 2010 Fall Meeting, abstract #S21C-2068 Pelties, C., J. de la Puente, J.-P. Ampuero, G. Brietzke, and M. Kaeser, Three-Dimensional Dynamic Rupture Simulation with a High-order Discontinuous Galerkin Method on Unstructured Tetrahedral Meshes, JGR. - Solid Earth, VOL. 117, B02309, 2012

Dynamic Rupture Benchmarking of the ADER-DG Method

NASA Astrophysics Data System (ADS)

Pelties, C.; Gabriel, A.

2012-12-01

We will verify the arbitrary high-order derivative Discontinuous Galerkin (ADER-DG) method in various test cases of the 'SCEC/USGS Dynamic Earthquake Rupture Code Verification Exercise' benchmark suite (Harris et al. 2009). The ADER-DG scheme is able to solve the spontaneous rupture problem with high-order accuracy in space and time on three-dimensional unstructured tetrahedral meshes. Strong mesh coarsening or refinement at areas of interest can be applied to keep the computational costs feasible. Moreover, the method does not generate spurious high-frequency contributions in the slip rate spectra and therefore does not require any artificial damping as demonstrated in previous presentations and publications (Pelties et al. 2010 and 2012). We will show that the mentioned features hold also for more advanced setups as e.g. a branching fault system, heterogeneous background stresses and bimaterial faults. The advanced geometrical flexibility combined with an enhanced accuracy will make the ADER-DG method a useful tool to study earthquake dynamics on complex fault systems in realistic rheologies. References: Harris, R.A., M. Barall, R. Archuleta, B. Aagaard, J.-P. Ampuero, H. Bhat, V. Cruz-Atienza, L. Dalguer, P. Dawson, S. Day, B. Duan, E. Dunham, G. Ely, Y. Kaneko, Y. Kase, N. Lapusta, Y. Liu, S. Ma, D. Oglesby, K. Olsen, A. Pitarka, S. Song, and E. Templeton, The SCEC/USGS Dynamic Earthquake Rupture Code Verification Exercise, Seismological Research Letters, vol. 80, no. 1, pages 119-126, 2009 Pelties, C., J. de la Puente, and M. Kaeser, Dynamic Rupture Modeling in Three Dimensions on Unstructured Meshes Using a Discontinuous Galerkin Method, AGU 2010 Fall Meeting, abstract #S21C-2068 Pelties, C., J. de la Puente, J.-P. Ampuero, G. Brietzke, and M. Kaeser, Three-Dimensional Dynamic Rupture Simulation with a High-order Discontinuous Galerkin Method on Unstructured Tetrahedral Meshes, JGR. - Solid Earth, VOL. 117, B02309, 2012

Recent work of decay spectroscopy at RIBF

NASA Astrophysics Data System (ADS)

Söderström, Pär-Anders

2014-09-01

β- and isomer-decay spectroscopy are sensitive probes of nuclear structure, and are often the only techniques capable of providing data for exotic nuclei that are producted with very low rates. Decay properties of exotic nuclei are also essential to model astrophysical events responible for the evolution of the universe such as the rp- and r-process. The EURICA project (EUROBALL RIKEN Cluster Array) has been launched in 2012 with the goal of performing spectroscopy of very exotic nuclei. Since 2012, four experimental campaigns have been successfully completed using fragmentation of 124Xe beam and in-flight-fission of 238U beam, approaching for example the key nuclei 78Ni, 110Zr, 100Sn, 128Pd, and 138Sn. This contribution highlights the experiments performed, results obtained, and discusses the future perspective of the EURICA project. In collaboration with Shunji Nishimura, Hidetada Baba, RIKEN Nishina Center; Frank Browne, Brighton University; Pieter Doornenbal, RIKEN Nishina Center; Guillaume Gey, Universite Joseph Fourier Grenoble; Tadaaki Isobe and Giuseppe Lorusso, RIKEN Nishina Center; Daniel Lubos, Technische Universitat Munchen; Kevin Mochner, University of Cologne; Zena Patel and Simon Rice, University of Surrey; Hiroyoshi Sakurai, RIKEN Nishina Center; Laura Sinclair, University of York; Toshiyuki Sumikama, Tohoku University; Jan Taprogge, Universidad Autonoma de Madrid; Zsolt Vajta, MTA Atomki; Hiroshi Watanabe, Beihang University; Jin Wu, Peking University; and Zhengyu Xu, University of Tokyo.

HYBRIDCHECK: software for the rapid detection, visualization and dating of recombinant regions in genome sequence data.

PubMed

Ward, Ben J; van Oosterhout, Cock

2016-03-01

HYBRIDCHECK is a software package to visualize the recombination signal in large DNA sequence data set, and it can be used to analyse recombination, genetic introgression, hybridization and horizontal gene transfer. It can scan large (multiple kb) contigs and whole-genome sequences of three or more individuals. HYBRIDCHECK is written in the r software for OS X, Linux and Windows operating systems, and it has a simple graphical user interface. In addition, the r code can be readily incorporated in scripts and analysis pipelines. HYBRIDCHECK implements several ABBA-BABA tests and visualizes the effects of hybridization and the resulting mosaic-like genome structure in high-density graphics. The package also reports the following: (i) the breakpoint positions, (ii) the number of mutations in each introgressed block, (iii) the probability that the identified region is not caused by recombination and (iv) the estimated age of each recombination event. The divergence times between the donor and recombinant sequence are calculated using a JC, K80, F81, HKY or GTR correction, and the dating algorithm is exceedingly fast. By estimating the coalescence time of introgressed blocks, it is possible to distinguish between hybridization and incomplete lineage sorting. HYBRIDCHECK is libré software and it and its manual are free to download from http://ward9250.github.io/HybridCheck/. © 2015 John Wiley & Sons Ltd.

The Double Face of Mucin-Type O-Glycans in Lectin-Mediated Infection and Immunity.

PubMed

Morozov, Vasily; Borkowski, Julia; Hanisch, Franz-Georg

2018-05-11

Epithelial human blood group antigens (HBGAs) on O-glycans play roles in pathogen binding and the initiation of infection, while similar structures on secretory mucins exert protective functions. These double-faced features of O-glycans in infection and innate immunity are reviewed based on two instructive examples of bacterial and viral pathogens. Helicobacter pylori represents a class 1 carcinogen in the human stomach. By expressing blood group antigen-binding adhesin ( BabA ) and LabA adhesins that bind to Lewis-b and LacdiNAc, respectively, H. pylori colocalizes with the mucin MUC5AC in gastric surface epithelia, but not with MUC6, which is cosecreted with trefoil factor family 2 ( TFF2 ) by deep gastric glands. Both components of the glandular secretome are concertedly up-regulated upon infection. While MUC6 expresses GlcNAc-capped glycans as natural antibiotics for H. pylori growth control, TFF2 may function as a probiotic lectin. In viral infection human noroviruses of the GII genogroup interact with HBGAs via their major capsid protein, VP1. HBGAs on human milk oligosaccharides (HMOs) may exert protective functions by binding to the P2 domain pocket on the capsid. We discuss structural details of the P2 carbohydrate-binding pocket in interaction with blood group H/Lewis-b HMOs and fucoidan-derived oligofucoses as effective interactors for the most prevalent norovirus strains, GII.4 and GII.17.

Adenoid hypertrophy and chronic rhinosinusitis: Helicobacter pylori on antral lavages, adenoid tissue and salival inmunoglobuline A on paediatric patients.

PubMed

Cedeño, Eleazar E Graterón; Ortiz-Princz, Diana; Figueredo, Sinay A Ceballos; Porro, María Eugenia Cavazza

2016-01-01

To determine Helicobacter pylori presence on antral lavages, adenoids and salival inmunoglobuline A on paediatric patients with chronic rhinosinusitis without nasal polyps (CRSsNP) and adenoid hypertrophy. Adenoid tissue, liquid obtained from antral lavages and saliva from 28 children diagnosed with CRSsNP, from the paediatric otorhinolaryngology practice of "Dr. Domingo Luciani" Hospital was taken and processed by means of polymerase chain reaction (PCR) using cagA, vacA and babA primers, also anatomopathological examination using Giemsa stain of the adenoids, determination of salivary specific secretory inmunoglobuline A (sIgA), socio-economic condition using the Graffar scale and associated gastrointestinal symptoms were assessed. No evidence of Helicobacter pylori neither in antral lavages liquid nor adenoid tissue was found using PCR and Giemsa stain. sIgA was present in 28.6% of the subjects. The most frequently found symptoms were, diarrhea in 17.9%, distension and abdominal pain in 10.7%, 64.3% of the patients were in working (28.6%) and low middle (35.7%) classes. Helicobacter pylori is not present neither in maxillary sinuses nor adenoid tissue of the evaluated patients, sIgA it is a non-invasive method for assessment of immunologic challenge with the bacteria, not the presence of acute or chronic infection. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

The significance of virulence factors in Helicobacter pylori

PubMed Central

SHIOTA, Seiji; SUZUKI, Rumiko; YAMAOKA, Yoshio

2013-01-01

Helicobacter pylori (H. pylori) infection is linked to various gastroduodenal diseases; however, only a small fraction of these patients develop associated diseases. Despite the high prevalence of H. pylori infection in Africa and South Asia, the incidence of gastric cancer in these areas is much lower than those in other countries. The incidence of gastric cancer tends to decrease from north to south in East Asia. Such geographic differences in the pathology can be explained, at least in part, by the presence of different types of H. pylori virulence factors in addition to the host and environmental factors. Virulence factors of H. pylori, such as cagA, vacA, dupA, iceA, oipA and babA, have been demonstrated to be predictors of severe clinical outcomes. Interestingly, meta-analysis showed that CagA seropositivity was associated with gastric cancer compared with gastritis even in East Asian countries where almost of the strains possessing cagA. Meta-analysis also confirmed the significance of vacA, dupA and iceA. However, there remains the possibility that additional important pathogenic genes can be existed because H. pylori consists of approximately 1 600 genes. Despite advances in our understanding of the development of H. pylori-related diseases, further work is required to clarify the roles of H. pylori virulence factors. PMID:23452293

Numerical computation of gravitational field of general extended body and its application to rotation curve study of galaxies

NASA Astrophysics Data System (ADS)

Fukushima, Toshio

2017-06-01

mass density distribution. Fortran 90 subroutines to execute these methods and their test programs and sample outputs are available from the author's WEB site: https://www.researchgate.net/profile/Toshio_Fukushima/

PREFACE: 11th International Workshop on Positron and Positronium Chemistry (PPC-11)

NASA Astrophysics Data System (ADS)

Pujari, P. K.; Sudarshan, K.; Dutta, D.

2015-06-01

The International Workshop on Positron and Positronium Chemistry (PPC) is a prestigious triennial conference series with a rich history. The 11th meeting in the series (PPC-11) was held at Cidade de Goa, Goa, India during 9-14, November, 2014. It was organized by Bhabha Atomic Research Centre (BARC), Mumbai. The co-organizers were Saha Institute of Nuclear Physics (SINP), Kolkata, Indira Gandhi Centre for Atomic Research (IGCAR), Kalpakkam and Indian Association of Nuclear Chemists and Allied Scientists (IANCAS), Mumbai. PPC-11 attracted participants both from academic institutions and industries. About 120 participants from 20 countries representing all continents participated in the conference. The conference continued the tradition of excellence in terms of quality of presentations and discussions. There were 33 plenary and invited talks, 39 oral presentations and 40 posters. The conference stood true to its multidisciplinary tag with papers presented in the fields of fundamentals of positron and positronium chemistry, applications in polymers, porous materials, metals/alloys, studies in liquids, biological applications as well as developments in theory and experimental techniques. The enthusiastic participation of senior researchers and young students made the scientific program a grand success. In order to encourage the student participants (twenty) and promote excellence, a committee of senior members evaluated their presentations and the top three contributions were awarded. The positron and positronium community paid homage to the memory of late Profs. J. Kristiak and A.T. Stewart. A brief sketch of their life and work was presented by Profs. Jan Kuriplach and Toshio Hyodo, respectively. All the papers published in these proceedings have been peer reviewed by the participants of PPC-11. Editors thank all the reviewers for sparing their valuable time and helping us in bringing out the proceedings with 43 contributed articles in the scheduled time. We are

PREFACE: Water Interfaces in Physics Chemistry and Biology: a multi-disciplinary approach

NASA Astrophysics Data System (ADS)

Bellissent-Funel, Marie-Claire; Dore, John

2009-07-01

meeting as well as five extended abstracts. 1. Initial Filling Mechanism of Predominant Water Adsorption on Hydrophobic Slit-Shaped Carbon Nanopores Tomonori Ohba and Katsumi Kaneko 2. Computer simulation study of water/hydrocarbon interfaces: effects of hydrocarbon branching on interfacial properties Janamejaya Chowdhary and Branka M Ladanyi 3. Thermodynamics of supercooled water in solutions D Corradini, P Gallo and M Rovere 4. Transferability of polarizable models for ion-water electrostatic interaction Marco Masia 5. Quantum chemical study of water impact on the calcium hydroxyapatite V D Khavryuchenko, O V Khavryuchenko, V V Lisnyak 6. Neutron Scattering Studies of Dynamic Crossover Phenomena in a Coupled System of Biopolymer and Its Hydration Water Sow-Hsin Chen, F Mallamace, X Q Chu, C Kim, M Lagi, A Faraone, E Fratini, P Baglioni 7. Looking for the best experimental conditions to detail the protein solvation shell in a binary aqueous solvent via Small Angle Scattering Maria Grazia Ortore, Raffaele Sinibaldi, Francesco Spinozzi, Andrea Carbini, Flavio Carsughi and Paolo Mariani 8. Influence of the water molecules near surface of viral protein on virus activation process S O Shepelenko, A S Salnikov, S V Rak, E P Goncharova and A B Ryzhikov 9. Optical Kerr effect measurements on supercooled water: the experimental perspectives P. Bartolini, A Taschin, R Eramo, R Righini and R Torre 10. Structural studies of water confined in a confined hydrophobic environment J C Dore, M-C Bellissent-Funel, A Burian, H P Castricum, J Jelassi, K Kaneko, T Ohba, H Tanaka and J B W Webber 11. Dynamic transition and glassy behaviour in hydrated proteins F Mezei, M Russina, G Chen, H Frauenfelder, P W Fenimore, P Falus and B Farago 12. Relation between frequency and H bond length in heavy water: Towards the understanding of the unusual properties of H bond dynamics in nanoporous media S Pommeret, R Musat, J-P Renault, J-C Leicknam and S Bratos 13. Quantum confinement of hydrogen in ice

Dynamic rupture simulation of the 2017 Mw 7.8 Kaikoura (New Zealand) earthquake: Is spontaneous multi-fault rupture expected?

NASA Astrophysics Data System (ADS)

Ando, R.; Kaneko, Y.

2017-12-01

The coseismic rupture of the 2016 Kaikoura earthquake propagated over the distance of 150 km along the NE-SW striking fault system in the northern South Island of New Zealand. The analysis of In-SAR, GPS and field observations (Hamling et al., 2017) revealed that the most of the rupture occurred along the previously mapped active faults, involving more than seven major fault segments. These fault segments, mostly dipping to northwest, are distributed in a quite complex manner, manifested by fault branching and step-over structures. Back-projection rupture imaging shows that the rupture appears to jump between three sub-parallel fault segments in sequence from the south to north (Kaiser et al., 2017). The rupture seems to be terminated on the Needles fault in Cook Strait. One of the main questions is whether this multi-fault rupture can be naturally explained with the physical basis. In order to understand the conditions responsible for the complex rupture process, we conduct fully dynamic rupture simulations that account for 3-D non-planar fault geometry embedded in an elastic half-space. The fault geometry is constrained by previous In-SAR observations and geological inferences. The regional stress field is constrained by the result of stress tensor inversion based on focal mechanisms (Balfour et al., 2005). The fault is governed by a relatively simple, slip-weakening friction law. For simplicity, the frictional parameters are uniformly distributed as there is no direct estimate of them except for a shallow portion of the Kekerengu fault (Kaneko et al., 2017). Our simulations show that the rupture can indeed propagate through the complex fault system once it is nucleated at the southernmost segment. The simulated slip distribution is quite heterogeneous, reflecting the nature of non-planar fault geometry, fault branching and step-over structures. We find that optimally oriented faults exhibit larger slip, which is consistent with the slip model of Hamling et al

Observations of apparent superslow wave propagation in solar prominences

NASA Astrophysics Data System (ADS)

Raes, J. O.; Van Doorsselaere, T.; Baes, M.; Wright, A. N.

2017-06-01

Context. Phase mixing of standing continuum Alfvén waves and/or continuum slow waves in atmospheric magnetic structures such as coronal arcades can create the apparent effect of a wave propagating across the magnetic field. Aims: We observe a prominence with SDO/AIA on 2015 March 15 and find the presence of oscillatory motion. We aim to demonstrate that interpreting this motion as a magneto hydrodynamic (MHD) wave is faulty. We also connect the decrease of the apparent velocity over time with the phase mixing process, which depends on the curvature of the magnetic field lines. Methods: By measuring the displacement of the prominence at different heights to calculate the apparent velocity, we show that the propagation slows down over time, in accordance with the theoretical work of Kaneko et al. We also show that this propagation speed drops below what is to be expected for even slow MHD waves for those circumstances. We use a modified Kippenhahn-Schlüter prominence model to calculate the curvature of the magnetic field and fit our observations accordingly. Results: Measuring three of the apparent waves, we get apparent velocities of 14, 8, and 4 km s-1. Fitting a simple model for the magnetic field configuration, we obtain that the filament is located 103 Mm below the magnetic centre. We also obtain that the scale of the magnetic field strength in the vertical direction plays no role in the concept of apparent superslow waves and that the moment of excitation of the waves happened roughly one oscillation period before the end of the eruption that excited the oscillation. Conclusions: Some of the observed phase velocities are lower than expected for slow modes for the circumstances, showing that they rather fit with the concept of apparent superslow propagation. A fit with our magnetic field model allows for inferring the magnetic geometry of the prominence. The movie attached to Fig. 1 is available at http://www.aanda.org

Alzheimer random walk

NASA Astrophysics Data System (ADS)

Odagaki, Takashi; Kasuya, Keisuke

2017-09-01

Using the Monte Carlo simulation, we investigate a memory-impaired self-avoiding walk on a square lattice in which a random walker marks each of sites visited with a given probability p and makes a random walk avoiding the marked sites. Namely, p = 0 and p = 1 correspond to the simple random walk and the self-avoiding walk, respectively. When p> 0, there is a finite probability that the walker is trapped. We show that the trap time distribution can well be fitted by Stacy's Weibull distribution b(a/b){a+1}/{b}[Γ({a+1}/{b})]-1x^a\\exp(-a/bx^b)} where a and b are fitting parameters depending on p. We also find that the mean trap time diverges at p = 0 as p- α with α = 1.89. In order to produce sufficient number of long walks, we exploit the pivot algorithm and obtain the mean square displacement and its Flory exponent ν(p) as functions of p. We find that the exponent determined for 1000 step walks interpolates both limits ν(0) for the simple random walk and ν(1) for the self-avoiding walk as [ ν(p) - ν(0) ] / [ ν(1) - ν(0) ] = pβ with β = 0.388 when p ≪ 0.1 and β = 0.0822 when p ≫ 0.1. Contribution to the Topical Issue "Continuous Time Random Walk Still Trendy: Fifty-year History, Current State and Outlook", edited by Ryszard Kutner and Jaume Masoliver.

Occurrence of Helicobacter pylori and its major virulence genotypes in dental plaque samples of patients with chronic periodontitis in Iran

PubMed Central

Valadan Tahbaz, Sahel; Yadegar, Abbas; Amirmozafari, Nour; Yaghoobee, Siamak; Ehsani Ardakani, Mohammad Javad; Zojaji, Homayoun

2017-01-01

Aim: This study was aimed to investigate the presence of H. pylori and its virulence genotypes in dental plaques of Iranian patients with chronic periodontitis. Background: Helicobacter pylori is a Gram-negative bacterium that is associated with atrophic gastritis, peptic ulcer, and gastric cancer. Several studies have detected this bacterium in the oral cavity, suggesting it as a potential reservoir. Methods: A hundred individuals were divided in 2 groups: 50 patients with chronic periodontitis (case group), and 50 subjects in non-periodontitis (control group). Supragingival and subgingival plaque samples were collected from the individuals using wood wedges and sterile paper points respectively, and prepared for PCR analysis. Results: Totally, H. pylori DNA was detected in 5 out of 100 (5%) dental plaques. Of 5 dental plaques positive for H. pylori, cagA gene was detected in 4 specimen, 3 in periodontitis group and one in non-periodontitis group. The H. pylori vacA s1m1 genotype was predominantly detected in 2/5 samples. The babA2 gene was detected in all (5/5) H. pylori-positive dental plaques. There was no significant correlation between the presence of H. pylori genotypes from dental plaques and chronic periodontitis (P > 0.05). Conclusion: Our results revealed that the rate of H. pylori is very low in the dental plaques of Iranian patients with chronic periodontitis. Majority of H. pylori strains from oral cavity were highly virulent based on the main clinically virulence factors they carried. PMID:29511475

Frequency of virulence factors in Helicobacter pylori-infected patients with gastritis.

PubMed

Salimzadeh, Loghman; Bagheri, Nader; Zamanzad, Behnam; Azadegan-Dehkordi, Fatemeh; Rahimian, Ghorbanali; Hashemzadeh-Chaleshtori, Morteza; Rafieian-Kopaei, Mahmoud; Sanei, Mohammad Hossein; Shirzad, Hedayatollah

2015-03-01

The outcome of Helicobacter pylori infection has been related to specific virulence-associated bacterial genotypes. The vacuolating cytotoxin (vacA), cagA gene, oipA and babA2 gene are important virulence factor involving gastric diseases. The objective of this study was to assess the relationship between virulence factors of H. pylori and histopathological findings. Gastroduodenoscopy was performed in 436 dyspeptic patients. Antrum biopsy was obtained for detection of H. pylori, virulence factors and for histopathological assessment. The polymerase chain reaction was used to detect virulence factors of H. pylori using specific primers. vacA genotypes in patients infected with H. pylori were associated with cagA, iceA1 and iceA2. In the patients with H. pylori infection there was a significant relationship between cagA positivity and neutrophil activity (P = 0.004) and chronic inflammation (P = 0.013) and with H. pylori density (P = 0.034). Neutrophil infiltration was found to be more severe in the s1 group than in the s2 group (P = 0.042). Also was a significant relationship between oipA positivity and neutrophil activity (P = 0.004) and with H. pylori density (P = 0.018). No significant relationships were observed between other vacA genotypes and histopathological parameters. H. pylori strains showing cagA, vacA s1 and oipA positivity are associated with more severe gastritis in some histological features but virulence factors of H. pylori do not appear to determine the overall pattern of gastritis. Copyright © 2015 Elsevier Ltd. All rights reserved.

The perception of stress and intonation in children with a cochlear implant and a hearing aid.

PubMed

Hegarty, Lauren; Faulkner, Andrew

2013-11-01

This study investigated whether low frequency information from a hearing aid improved the perception of stress and intonation by English-speaking children with cochlear implants. As pitch information is limited for cochlear implant users, this study also investigated if users rely more on the cues of duration and amplitude to perceive stress and intonation. Nine children with bimodal stimulation (cochlear implant and hearing aid) participated in two experiments. The first measured the just audible change in F0 (pitch) and amplitude for a speech-like word 'baba'. The second experiment examined the children's ability to identify focus in natural and manipulated sentences. Overall, group results did not show a bimodal advantage in perceiving stress and intonation. However, the children were significantly better at perceiving focus in sentences with natural speech compared with manipulated speech in both the CI and bimodal conditions. The results suggest that in the absence of pitch cues, amplitude and duration cues are used to perceive stress and intonation. However, the majority of children only perceived amplitude changes greater than the changes typically found in speech, implying duration cues were the most valuable. Taken together the findings suggest that for children with cochlear implants, cues to F0 may not be essential for prosody perception and in the absence of cues to F0 and amplitude, duration may offer an alternative cue. Although a bimodal advantage was not demonstrated for all participants, it is recommended that if clinically appropriate, a contralateral hearing aid is fitted and trialled to exploit any residual hearing.

Preventive effects of a phospholipid polymer coating on PMMA on biofilm formation by oral streptococci

NASA Astrophysics Data System (ADS)

Shibata, Yukie; Yamashita, Yoshihisa; Tsuru, Kanji; Ishihara, Kazuhiko; Fukazawa, Kyoko; Ishikawa, Kunio

2016-12-01

The regulation of biofilm formation on dental materials such as denture bases is key to oral health. Recently, a biocompatible phospholipid polymer, poly(2-methacryloyloxyethyl phosphorylcholine-co-n-butyl methacrylate) (PMB) coating, was reported to inhibit sucrose-dependent biofilm formation by Streptococcus mutans, a cariogenic bacterium, on the surface of poly(methyl methacrylate) (PMMA) denture bases. However, S. mutans is a minor component of the oral microbiome and does not play an important role in biofilm formation in the absence of sucrose. Other, more predominant oral streptococci must play an indispensable role in sucrose-independent biofilm formation. In the present study, the effect of PMB coating on PMMA was evaluated using various oral streptococci that are known to be initial colonizers during biofilm formation on tooth surfaces. PMB coating on PMMA drastically reduced sucrose-dependent tight biofilm formation by two cariogenic bacteria (S. mutans and Streptococcus sobrinus), among seven tested oral streptococci, as described previously [N. Takahashi, F. Iwasa, Y. Inoue, H. Morisaki, K. Ishihara, K. Baba, J. Prosthet. Dent. 112 (2014) 194-203]. Streptococci other than S. mutans and S. sobrinus did not exhibit tight biofilm formation even in the presence of sucrose. On the other hand, all seven species of oral streptococci exhibited distinctly reduced glucose-dependent soft biofilm retention on PMB-coated PMMA. We conclude that PMB coating on PMMA surfaces inhibits biofilm attachment by initial colonizer oral streptococci, even in the absence of sucrose, indicating that PMB coating may help maintain clean conditions on PMMA surfaces in the oral cavity.

Residual stress dependant anisotropic band gap of various (hkl) oriented BaI{sub 2} films

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kumar, Pradeep; Gulia, Vikash; Vedeshwar, Agnikumar G., E-mail: agni@physics.du.ac.in, E-mail: agvedeshwar@gmail.com

2013-11-21

The thermally evaporated layer structured BaI{sub 2} grows in various completely preferred (hkl) film orientations with different growth parameters like film thickness, deposition rate, substrate temperature, etc. which were characterized by structural, morphological, and optical absorption measurements. Structural analysis reveals the strain in the films and the optical absorption shows a direct type band gap. The varying band gaps of these films were found to scale linearly with their strain. The elastic moduli and other constants were also calculated using Density Functional Theory (DFT) formalism implemented in WIEN2K code for converting the strain into residual stress. Films of different sixmore » (hkl) orientations show stress free anisotropic band gaps (2.48–3.43 eV) and both positive and negative pressure coefficients. The negative and positive pressure coefficients of band gap are attributed to the strain in I-I (or Ba-Ba or both) and Ba-I distances along [hkl], respectively. The calculated band gaps are also compared with those experimentally determined. The average pressure coefficient of band gap of all six orientations (−0.071 eV/GPa) found to be significantly higher than that calculated (−0.047 eV/GPa) by volumetric pressure dependence. Various these issues have been discussed with consistent arguments. The electron effective mass m{sub e}{sup *}=0.66m{sub 0} and the hole effective mass m{sub h}{sup *}=0.53m{sub 0} have been determined from the calculated band structure.« less

The significance of virulence factors in Helicobacter pylori.

PubMed

Shiota, Seiji; Suzuki, Rumiko; Yamaoka, Yoshio

2013-07-01

Helicobacter pylori (H. pylori) infection is linked to various gastroduodenal diseases; however, only a small fraction of these patients develop associated diseases. Despite the high prevalence of H. pylori infection in Africa and South Asia, the incidence of gastric cancer in these areas is much lower than those in other countries. The incidence of gastric cancer tends to decrease from north to south in East Asia. Such geographical differences in the pathology can be explained, at least in part, by the presence of different types of H. pylori virulence factors in addition to host and environmental factors. Virulence factors of H. pylori, such as CagA, VacA, DupA, IceA, OipA and BabA, have been demonstrated to be the predictors of severe clinical outcomes. Interestingly, a meta-analysis showed that CagA seropositivity was associated with gastric cancer compared with gastritis, even in East Asian countries where almost the strains possess cagA. Another meta-analysis also confirmed the significance of vacA, dupA and iceA. However, it is possible that additional important pathogenic genes may exist because H. pylori consists of approximately 1600 genes. Despite the advances in our understanding of the development of H. pylori infection-related diseases, further work is required to clarify the roles of H. pylori virulence factors. © 2013 The Authors. Journal of Digestive Diseases © 2013 Wiley Publishing Asia Pty Ltd and Chinese Medical Association Shanghai Branch, Chinese Society of Gastroenterology, Renji Hospital Affiliated to Shanghai Jiaotong University School of Medicine.

Genomic Analysis Reveals Hypoxia Adaptation in the Tibetan Mastiff by Introgression of the Gray Wolf from the Tibetan Plateau.

PubMed

Miao, Benpeng; Wang, Zhen; Li, Yixue

2017-03-01

The Tibetan Mastiff (TM), a native of the Tibetan Plateau, has quickly adapted to the extreme highland environment. Recently, the impact of positive selection on the TM genome was studied and potential hypoxia-adaptive genes were identified. However, the origin of the adaptive variants remains unknown. In this study, we investigated the signature of genetic introgression in the adaptation of TMs with dog and wolf genomic data from different altitudes in close geographic proximity. On a genome-wide scale, the TM was much more closely related to other dogs than wolves. However, using the 'ABBA/BABA' test, we identified genomic regions from the TM that possibly introgressed from Tibetan gray wolf. Several of the regions, including the EPAS1 and HBB loci, also showed the dominant signature of selective sweeps in the TM genome. We validated the introgression of the two loci by excluding the possibility of convergent evolution and ancestral polymorphisms and examined the haplotypes of all available canid genomes. The estimated time of introgression based on a non-coding region of the EPAS1 locus mostly overlapped with the Paleolithic era. Our results demonstrated that the introgression of hypoxia adaptive genes in wolves from the highland played an important role for dogs living in hypoxic environments, which indicated that domestic animals could acquire local adaptation quickly by secondary contact with their wild relatives. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Graduate student voice use and vocal efficiency in an opera rehearsal week: a case study.

PubMed

Schloneger, Matthew J

2011-11-01

The purpose of this case study was to document graduate voice students' (N=2) voice use before, during, and after an intense week of opera rehearsals through (1) acquired Ambulatory Phonation Monitor (APM) data, (2) daily surveys, (3) participant activity logs, (4) three administrations of the Singing Voice Handicap Index (SVHI), and (5) pre- and post-stroboscopic laryngeal examinations. Two female graduate students, both of whom were cast in a university production of Stravinsky's The Rake's Progress (stage names Anne and Baba) and both of whom served as graduate teaching assistants in voice, wore APMs during waking hours for 9 days, including two pretest baseline days, a 5-day intensive rehearsal week just before the opera production week, and 2 baseline days after opera performances were completed. Mean phonation time dose percentages (Dt) and daily distance dose averages (Dd) were similar between the pre- and posttest periods and the intensive week. Disaggregation of acquired data by four types of activities (opera rehearsals, personal practice time, voice teaching time, and nonrehearsal or teaching time) indicated that the highest mean Dts and Dds were acquired during personal practice time and voice teaching time. Daily surveys and SVHI data as well as the pre- and post-stroboscopies indicated no notable changes occurring in vocal health. Results indicated that these singers were conscious about their voice use during periods of extensive performance demands. However, high vocal doses during voice teaching times suggest that these individuals might benefit from teacher voice care education. Copyright © 2011 The Voice Foundation. Published by Mosby, Inc. All rights reserved.

The development and characterisation of a bacterial artificial chromosome library for Fragaria vesca

PubMed Central

Bonet, Julio; Girona, Elena Lopez; Sargent, Daniel J; Muñoz-Torres, Monica C; Monfort, Amparo; Abbott, Albert G; Arús, Pere; Simpson, David W; Davik, Jahn

2009-01-01

Background The cultivated strawberry Fragaria ×ananassa is one of the most economically-important soft-fruit species. Few structural genomic resources have been reported for Fragaria and there exists an urgent need for the development of physical mapping resources for the genus. The first stage in the development of a physical map for Fragaria is the construction and characterisation of a high molecular weight bacterial artificial chromosome (BAC) library. Methods A BAC library, consisting of 18,432 clones was constructed from Fragaria vesca f. semperflorens accession 'Ali Baba'. BAC DNA from individual library clones was pooled to create a PCR-based screening assay for the library, whereby individual clones could be identified with just 34 PCR reactions. These pools were used to screen the BAC library and anchor individual clones to the diploid Fragaria reference map (FV×FN). Findings Clones from the BAC library developed contained an average insert size of 85 kb, representing over seven genome equivalents. The pools and superpools developed were used to identify a set of BAC clones containing 70 molecular markers previously mapped to the diploid Fragaria FV×FN reference map. The number of positive colonies identified for each marker suggests the library represents between 4× and 10× coverage of the diploid Fragaria genome, which is in accordance with the estimate of library coverage based on average insert size. Conclusion This BAC library will be used for the construction of a physical map for F. vesca and the superpools will permit physical anchoring of molecular markers using PCR. PMID:19772672

Robustness analysis of interdependent networks under multiple-attacking strategies

NASA Astrophysics Data System (ADS)

Gao, Yan-Li; Chen, Shi-Ming; Nie, Sen; Ma, Fei; Guan, Jun-Jie

2018-04-01

The robustness of complex networks under attacks largely depends on the structure of a network and the nature of the attacks. Previous research on interdependent networks has focused on two types of initial attack: random attack and degree-based targeted attack. In this paper, a deliberate attack function is proposed, where six kinds of deliberate attacking strategies can be derived by adjusting the tunable parameters. Moreover, the robustness of four types of interdependent networks (BA-BA, ER-ER, BA-ER and ER-BA) with different coupling modes (random, positive and negative correlation) is evaluated under different attacking strategies. Interesting conclusions could be obtained. It can be found that the positive coupling mode can make the vulnerability of the interdependent network to be absolutely dependent on the most vulnerable sub-network under deliberate attacks, whereas random and negative coupling modes make the vulnerability of interdependent network to be mainly dependent on the being attacked sub-network. The robustness of interdependent network will be enhanced with the degree-degree correlation coefficient varying from positive to negative. Therefore, The negative coupling mode is relatively more optimal than others, which can substantially improve the robustness of the ER-ER network and ER-BA network. In terms of the attacking strategies on interdependent networks, the degree information of node is more valuable than the betweenness. In addition, we found a more efficient attacking strategy for each coupled interdependent network and proposed the corresponding protection strategy for suppressing cascading failure. Our results can be very useful for safety design and protection of interdependent networks.

Deep-sea squat lobsters of the genus Paramunida Baba, 1988 (Crustacea: Decapoda: Munididae) from north-western Australia: new records and description of three new species.

PubMed

Mccallum, Anna W; Cabezas, Patricia; Andreakis, Nikos

2016-10-04

Six species of Paramunida are reported from the continental margin of north-western Australia. Three species are new to science: Paramunida christinae sp. nov., P. ioannis sp. nov., and P. spiniantennata sp. nov. Two species are reported for the first time from Australian waters, P. evexa Macpherson, 1996 and P. tricarinata (Alcock, 1894). These species were confirmed by molecular evidence from the mitochondrial markers ND1 and 16S. We also examine phylogenetic relationships within the genus, and provide an identification key for all known Paramunida species.

Characteristics of strong ground motion generation areas by fully dynamic earthquake cycles

NASA Astrophysics Data System (ADS)

Galvez, P.; Somerville, P.; Ampuero, J. P.; Petukhin, A.; Yindi, L.

2016-12-01

thersholds (Kaneko et al., 2011). We parallelized QDYN with MPI to enable the simulation of fully dynamic earthquake cycles of Mw 8-9 earthquakes in faults that also produce Mw 7 earthquakes.This study was based on the 2015 research project `Improvement for uncertainty of strong ground motion prediction' by the Nuclear Regulation Authority (NRA), Japan.

Comparison of actual and seismologically inferred stress drops in dynamic models of microseismicity

NASA Astrophysics Data System (ADS)

Lin, Y. Y.; Lapusta, N.

2017-12-01

Estimating source parameters for small earthquakes is commonly based on either Brune or Madariaga source models. These models assume circular rupture that starts from the center of a fault and spreads axisymmetrically with a constant rupture speed. The resulting stress drops are moment-independent, with large scatter. However, more complex source behaviors are commonly discovered by finite-fault inversions for both large and small earthquakes, including directivity, heterogeneous slip, and non-circular shapes. Recent studies (Noda, Lapusta, and Kanamori, GJI, 2013; Kaneko and Shearer, GJI, 2014; JGR, 2015) have shown that slip heterogeneity and directivity can result in large discrepancies between the actual and estimated stress drops. We explore the relation between the actual and seismologically estimated stress drops for several types of numerically produced microearthquakes. For example, an asperity-type circular fault patch with increasing normal stress towards the middle of the patch, surrounded by a creeping region, is a potentially common microseismicity source. In such models, a number of events rupture the portion of the patch near its circumference, producing ring-like ruptures, before a patch-spanning event occurs. We calculate the far-field synthetic waveforms for our simulated sources and estimate their spectral properties. The distribution of corner frequencies over the focal sphere is markedly different for the ring-like sources compared to the Madariaga model. Furthermore, most waveforms for the ring-like sources are better fitted by a high-frequency fall-off rate different from the commonly assumed value of 2 (from the so-called omega-squared model), with the average value over the focal sphere being 1.5. The application of Brune- or Madariaga-type analysis to these sources results in the stress drops estimates different from the actual stress drops by a factor of up to 125 in the models we considered. We will report on our current studies of

The Lithological Constraint To Gas Hydrate Formation: Evidence OF Grain Size Of Sediments From IODP 311 On CASCADIA Margin

NASA Astrophysics Data System (ADS)

Wang, J.

2006-12-01

A total of 614 sediment samples at intervals of about 1.5 m from all 5 sites of the Integrated Ocean Drilling Program (IODP) Expedition 311 on Cascadia Margin were analyzed using a Beckman Coulter LS-230 Particle Analyzer. The grain-size data were then plotted in depth and compared with other proxies of gas hydrate- occurrence such as soupy/mousse-like structures in sediments, gas hydrate concentration (Sh) derived from LWD data using Archie's relation, IR core images (infrared image) and the recovered samples of gas hydrate¨Cbearing sediments. A good relationship between the distribution of coarse grains in size of 31-63¦Ìm and 63-125¦Ìm sediments and the potential occurrence of gas hydrate was found across the entire gas hydrate stability zone. The depth distribution of grain size from the Site U1326 shows clear excursions at depths of 5-8, 21-26, 50- 123, 132-140, 167-180, 195-206 and 220-240 mbsf, which coincide with the potential occurrence of gas hydrate suggested by soupy/mousse-like structures, logging-derived gas hydrate concentrations (Sh) and the recovered samples of the gas hydrate¨Cbearing sand layers. The lithology of sediments significantly affects the formation of gas hydrate. Gas hydrate forms preferentially within relatively coarse grain-size sediments above 31 ¦Ìm. Key words: grain size of sediments, constraint, occurrence of gas hydrate, IODP 311 IODP Expedition 311 Scientists: Michael Riedel (Co-chief Scientist), Timothy S. Collett (Co-chief Scientist), Mitchell Malone (Expedition Project Manager/Staff Scientist), Gilles Gu¨¨rin, Fumio Akiba, Marie-Madeleine Blanc-Valleron, Michelle Ellis, Yoshitaka Hashimoto, Verena Heuer, Yosuke Higashi, Melanie Holland, Peter D. Jackson, Masanori Kaneko, Miriam Kastner, Ji-Hoon Kim, Hiroko Kitajima, Philip E. Long, Alberto Malinverno, Greg Myers, Leena D. Palekar, John Pohlman, Peter Schultheiss, Barbara Teichert, Marta E. Torres, Anne M. Tr¨¦hu, Jiasheng Wang, Ulrich G. Wortmann, Hideyoshi

Hidden histories of gene flow in highland birds revealed with genomic markers.

PubMed

Zarza, Eugenia; Faircloth, Brant C; Tsai, Whitney L E; Bryson, Robert W; Klicka, John; McCormack, John E

2016-10-01

Genomic studies are revealing that divergence and speciation are marked by gene flow, but it is not clear whether gene flow has played a prominent role during the generation of biodiversity in species-rich regions of the world where vicariance is assumed to be the principal mode by which new species form. We revisit a well-studied organismal system in the Mexican Highlands, Aphelocoma jays, to test for gene flow among Mexican sierras. Prior results from mitochondrial DNA (mtDNA) largely conformed to the standard model of allopatric divergence, although there was also evidence for more obscure histories of gene flow in a small sample of nuclear markers. We tested for these 'hidden histories' using genomic markers known as ultraconserved elements (UCEs) in concert with phylogenies, clustering algorithms and newer introgression tests specifically designed to detect ancient gene flow (e.g. ABBA/BABA tests). Results based on 4303 UCE loci and 2500 informative SNPs are consistent with varying degrees of gene flow among highland areas. In some cases, gene flow has been extensive and recent (although perhaps not ongoing today), whereas in other cases there is only a trace signature of ancient gene flow among species that diverged as long as 5 million years ago. These results show how a species complex thought to be a model for vicariance can reveal a more reticulate history when a broader portion of the genome is queried. As more organisms are studied with genomic data, we predict that speciation-with-bouts-of-gene-flow will turn out to be a common mode of speciation. © 2016 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

Electron microscopic, genetic and protein expression analyses of Helicobacter acinonychis strains from a Bengal tiger.

PubMed

Tegtmeyer, Nicole; Rivas Traverso, Francisco; Rohde, Manfred; Oyarzabal, Omar A; Lehn, Norbert; Schneider-Brachert, Wulf; Ferrero, Richard L; Fox, James G; Berg, Douglas E; Backert, Steffen

2013-01-01

Colonization by Helicobacter species is commonly noted in many mammals. These infections often remain unrecognized, but can cause severe health complications or more subtle host immune perturbations. The aim of this study was to isolate and characterize putative novel Helicobacter spp. from Bengal tigers in Thailand. Morphological investigation (Gram-staining and electron microscopy) and genetic studies (16SrRNA, 23SrRNA, flagellin, urease and prophage gene analyses, RAPD DNA fingerprinting and restriction fragment polymorphisms) as well as Western blotting were used to characterize the isolated Helicobacters. Electron microscopy revealed spiral-shaped bacteria, which varied in length (2.5-6 µm) and contained up to four monopolar sheathed flagella. The 16SrRNA, 23SrRNA, sequencing and protein expression analyses identified novel H. acinonychis isolates closely related to H. pylori. These Asian isolates are genetically very similar to H. acinonychis strains of other big cats (cheetahs, lions, lion-tiger hybrid and other tigers) from North America and Europe, which is remarkable in the context of the great genetic diversity among worldwide H. pylori strains. We also found by immunoblotting that the Bengal tiger isolates express UreaseA/B, flagellin, BabA adhesin, neutrophil-activating protein NapA, HtrA protease, γ-glutamyl-transpeptidase GGT, Slt lytic transglycosylase and two DNA transfer relaxase orthologs that were known from H. pylori, but not the cag pathogenicity island, nor CagA, VacA, SabA, DupA or OipA proteins. These results give fresh insights into H. acinonychis genetics and the expression of potential pathogenicity-associated factors and their possible pathophysiological relevance in related gastric infections.

Electron Microscopic, Genetic and Protein Expression Analyses of Helicobacter acinonychis Strains from a Bengal Tiger

PubMed Central

Tegtmeyer, Nicole; Rivas Traverso, Francisco; Rohde, Manfred; Oyarzabal, Omar A.; Lehn, Norbert; Schneider-Brachert, Wulf; Ferrero, Richard L.; Fox, James G.; Berg, Douglas E.; Backert, Steffen

2013-01-01

Colonization by Helicobacter species is commonly noted in many mammals. These infections often remain unrecognized, but can cause severe health complications or more subtle host immune perturbations. The aim of this study was to isolate and characterize putative novel Helicobacter spp. from Bengal tigers in Thailand. Morphological investigation (Gram-staining and electron microscopy) and genetic studies (16SrRNA, 23SrRNA, flagellin, urease and prophage gene analyses, RAPD DNA fingerprinting and restriction fragment polymorphisms) as well as Western blotting were used to characterize the isolated Helicobacters. Electron microscopy revealed spiral-shaped bacteria, which varied in length (2.5–6 µm) and contained up to four monopolar sheathed flagella. The 16SrRNA, 23SrRNA, sequencing and protein expression analyses identified novel H. acinonychis isolates closely related to H. pylori. These Asian isolates are genetically very similar to H. acinonychis strains of other big cats (cheetahs, lions, lion-tiger hybrid and other tigers) from North America and Europe, which is remarkable in the context of the great genetic diversity among worldwide H. pylori strains. We also found by immunoblotting that the Bengal tiger isolates express UreaseA/B, flagellin, BabA adhesin, neutrophil-activating protein NapA, HtrA protease, γ-glutamyl-transpeptidase GGT, Slt lytic transglycosylase and two DNA transfer relaxase orthologs that were known from H. pylori, but not the cag pathogenicity island, nor CagA, VacA, SabA, DupA or OipA proteins. These results give fresh insights into H. acinonychis genetics and the expression of potential pathogenicity-associated factors and their possible pathophysiological relevance in related gastric infections. PMID:23940723

Role of bacterial and genetic factors in gastric cancer in Costa Rica

PubMed Central

Con, Sergio A; Takeuchi, Hiroaki; Con-Chin, Gil R; Con-Chin, Vicky G; Yasuda, Nobufumi; Con-Wong, Reinaldo

2009-01-01

AIM: To evaluate several risk factors for gastric cancer (GC) in Costa Rican regions with contrasting GC incidence rate (GCIR). METHODS: According to GCIR, 191 Helicobacter pylori (H pylori)-positive patients were classified into groups A (high GCIR, n = 101) and B (low GCIR, n = 90). Human DNA obtained from biopsy specimens was used in the determination of polymorphisms of the genes coding for interleukin (IL)-1β and IL-10 by PCR-RFLP, and IL-1RN by PCR. H pylori DNA extractions obtained from clinical isolates of 83 patients were used for PCR-based genotyping of H pylori cagA, vacA and babA2. Human DNA from gastric biopsies of 52 GC patients was utilized for comparative purposes. RESULTS: Cytokine polymorphisms showed no association with GCIR variability. However, gastric atrophy, intestinal metaplasia and strains with different vacA genotypes in the same stomach (mixed strain infection) were more frequently found in group A than in group B, and cagA and vacA s1b were significantly associated with high GCIR (P = 0.026 and 0.041, respectively). IL-1β+3954_T/C (OR 2.1, 1.0-4.3), IL-1RN*2/L (OR 3.5, 1.7-7.3) and IL-10-592_C/A (OR 3.2, 1.5-6.8) were individually associated with GC, and a combination of these cytokine polymorphisms with H pylori vacA s1b and m1 further increased the risk (OR 7.2, 1.4-36.4). CONCLUSION: Although a proinflammatory cytokine genetic profile showed an increased risk for developing GC, the characteristics of H pylori infection, in particular the status of cagA and vacA genotype distribution seemed to play a major role in GCIR variability in Costa Rica. PMID:19132772

Usefulness of rapid urease test samples for molecular analysis of clarithromycin resistance in Helicobacter pylori.

PubMed

Baroni, María R; Bucci, Pamela; Giani, Rita N; Giusti, Antonela; Tedeschi, Fabian A; Salvatierra, Emiliano; Barbaglia, Yanina; Jimenez, Félix; Zalazar, Fabian E

2018-03-27

Helicobacter pylori is a gastric pathogen that is widely recognized as a causative agent of gastric disease. Its eradication is variable, mainly due to increased resistance to clarithromycin. Our objective was: to evaluate (i) if the biopsy specimen used for the rapid urease test is a useful sample to detect resistance to clarithromycin by PCR-RFLP and (ii) the distribution of A2142G and A2143G point mutations in the 23S rRNA gene, in relation to virulence factors in our region. Gastric specimens were collected from adult dyspeptic patients (n=141) and H. pylori was investigated by the rapid urease test, histopathological analysis and PCR for the hsp60 gene. Clarithromycin resistance was detected by PCR-RFLP in 62 H. pylori (+) paired biopsy specimens submitted to molecular analysis and the rapid urease test. H. pylori virulence factors were analyzed by multiplex PCR using specific primers for the cagA, vacA and babA2 genes. Thirteen out of 62 strains (20.9%) were resistant to clarithromycin: 6/13 (46.2%) harbored the A2143G mutation whereas 7/13 (53.8%) carried the A2142G point mutation. vacA m1s1 was the most frequent genotype among the resistant strains. In conclusion, the biopsy specimens used for the rapid urease test were suitable samples for clarithromycin resistance detection in patients infected with H. pylori, which became especially useful in cases where the number or size of the biopsies is limited. In addition, this is the first report of a molecular analysis for clarithromycin resistance performed directly from gastric biopsies in our region. Copyright © 2018 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

Human Gastric Mucins Differently Regulate Helicobacter pylori Proliferation, Gene Expression and Interactions with Host Cells

PubMed Central

Skoog, Emma C.; Sjöling, Åsa; Navabi, Nazanin; Holgersson, Jan; Lundin, Samuel B.; Lindén, Sara K.

2012-01-01

Helicobacter pylori colonizes the mucus niche of the gastric mucosa and is a risk factor for gastritis, ulcers and cancer. The main components of the mucus layer are heavily glycosylated mucins, to which H. pylori can adhere. Mucin glycosylation differs between individuals and changes during disease. Here we have examined the H. pylori response to purified mucins from a range of tumor and normal human gastric tissue samples. Our results demonstrate that mucins from different individuals differ in how they modulate both proliferation and gene expression of H. pylori. The mucin effect on proliferation varied significantly between samples, and ranged from stimulatory to inhibitory, depending on the type of mucins and the ability of the mucins to bind to H. pylori. Tumor-derived mucins and mucins from the surface mucosa had potential to stimulate proliferation, while gland-derived mucins tended to inhibit proliferation and mucins from healthy uninfected individuals showed little effect. Artificial glycoconjugates containing H. pylori ligands also modulated H. pylori proliferation, albeit to a lesser degree than human mucins. Expression of genes important for the pathogenicity of H. pylori (babA, sabA, cagA, flaA and ureA) appeared co-regulated in response to mucins. The addition of mucins to co-cultures of H. pylori and gastric epithelial cells protected the viability of the cells and modulated the cytokine production in a manner that differed between individuals, was partially dependent of adhesion of H. pylori to the gastric cells, but also revealed that other mucin factors in addition to adhesion are important for H. pylori-induced host signaling. The combined data reveal host-specific effects on proliferation, gene expression and virulence of H. pylori due to the gastric mucin environment, demonstrating a dynamic interplay between the bacterium and its host. PMID:22563496

Tsunami magnetic signals in the Northwestern Pacific seafloor magnetic measurements

NASA Astrophysics Data System (ADS)

Schnepf, N. R.; An, C.; Nair, M. C.; Maus, S.

2013-12-01

In the past two decades, underwater cables and seafloor magnetometers have observed motional inductance from ocean tsunamis. This study aimed to characterize the electromagnetic signatures of tsunamis from seafloor stations to assist in the long-term goal of real-time tsunami detection and warning systems. Four ocean seafloor stations (T13, T14, T15, T18) in the Northeastern Philippine Sea collected vector measurements of the electric and magnetic fields every minute during the period of 10/05/2005 to 11/30/2007 (Baba et al., 2010 PEPI). During this time, four major tsunamis occurred as a result of moment magnitude 8.0-8.1 earthquakes. These tsunamis include the 05/03/2006 Tonga event, the 01/13/2007 Kuril Islands event, the 04/01/2007 Solomon Islands event, and the 08/15/2007 Peru event. The Cornell Multi-grid Coupled Tsunami model (COMCOT) was used to predict the arrival time of the tsunamis at each of the seafloor stations. The stations' raw magnetic field signals underwent a high pass filter to then be examined for signals of the tsunami arrival. The high pass filtering showed clear tsunami signals for the Tonga event, but a clear signal was not seen for the other events. This may be due to signals from near Earth space with periods similar to tsunamis. To remove extraneous atmospheric magnetic signals, a cross-wavelet analysis was conducted using the horizontal field components from three INTERMAGNET land stations and the vertical component from the seafloor stations. The cross-wavelet analysis showed that for three of the six stations (two of the four tsunami events) the peak in wavelet amplitude matched the arrival of the tsunami. We discuss implications of our finding in magnetic monitoring of tsunamis.

Visible Photodissociation Spectra of the 1-METHYL and 2-METHYLNAPHTHALENE Cations: Laser Spectroscopy and Theoretical Simulations

NASA Astrophysics Data System (ADS)

Friha, Hela; Feraud, Geraldine; Falvo, Cyril; Parneix, Pascal; Pino, Thomas; Brechignac, Philippe; Troy, Tyler; Schmidt, Timothy; Dhaouadi, Zoubeida

2014-06-01

Naphthalene (Np) and its methylated derivatives (1-Me-Np and 2-Me-Np) are prototype molecules for spectroscopists as first members of the polycyclic aromatic hydrocarbons (PAHs) family. High resolution studies are capable to explore the details of the internal rotation of the methyl group. Although this was achieved in neutral PAHs, the task is not the same in cations. Me-Np cations have been probed by resonance-enhanced multiphoton dissociation, showing only very broad and unresolved spectra, while absorption in argon matrix revealed more resolved vibronic bands. The electronic absorption gas phase spectra of 1-Me-Np^+ and 2-Me-Np^+ were measured using an Ar-tagging technique. In both cases, a band system was observed in the visible range and assigned to the D_2← D_0 transition. The 1-Me-Np^+ absorption bands revealed a red shift of 808 cm-1, relative to Np^+ (14 906 cm-1), while for 2-Me-Np^+ a blue shift of 226 cm-1 was found. A short vibrational progression was also observed. Moreover, insights into the internal rotation motion of the CH_3 were inferred, although intrinsic broadening due to intramolecular relaxation was present. These measurements were supported by detailed quantum chemical calculations that allowed exploration of the potential energy curves, along with a complete simulation of the harmonic FC factors using the cumulant Gaussian fluctuations formalism, extended to include the internal rotation. see for instance Baba et al, J.Phys.Chem.A, 2009, 113, 2366 Dunbar et al, J. Am. Chem. Soc. 1976, 98, 7994-7999; J.Phys.Chem. 1985, 89, 3617 Andrews et al, J.Phys.Chem. 1982, 86, 2916 Pino et al, J. Chem. Phys. 1999, 111, 7337-7347

High-Resolution Laser Spectroscopy of the tilde{B} ← tilde{X} Transition of 14NO3 Radical: Vibrationally Excited States of the tilde{B} State

NASA Astrophysics Data System (ADS)

Kasahara, Shunji; Tada, Kohei; Hirata, Michihiro; Ishiwata, Takashi; Hirota, Eizi

2016-06-01

Rotationally-resolved high-resolution fluorescence excitation spectra of the tilde{B} 2E' ← tilde{X} 2A2' electronic transition of 14NO3 radical have been observed for 15860-15920 cm-1 region. Sub-Doppler excitation spectra were measured by crossing a single-mode laser beam perpendicular to a collimated radical beam, which was formed by the heat decomposition of 14N2O5; 14N2O5 → 14NO3 + 14NO2. We have also measured the high-resolution fluorescence excitation spectra of the 14NO2 tilde{A} 2B{2} ← tilde{X} 2A1 transition to distinguish the 14NO3 signals from the 14NO2 signals in the observed region. The typical linewidth was 30 MHz and the absolute wavenumber was calibrated with accuracy 0.0001 cm-1 by measurement of the Doppler-free saturation spectrum of iodine molecule and fringe pattern of the stabilized etalon. The observed rotational lines were too complicated to find any rotational series. In the observed spectra, only the rotational line pairs from the tilde{X} 2A2'(v''=0, K''=0, N''=1, F1 and F2) levels are assigned unambiguously by using the combination differences of the tilde{X} 2A2' state and measurement of the Zeeman splittings similar to the analysis of the 0-0 band at around 15100 cm-1 region. The observed results suggest the observed vibrationally excited states of the tilde{B} 2E' state are also interacts with the other vibronic levels similar to the tilde{B} 2E'(v'=0) level. K. Tada, W. Kashihara, M. Baba, T. Ishiwata, E. Hirota, and S. Kasahara, J. Chem. Physc. 141, 184307 (2014). K. Tada, T. Ishiwata, E. Hirota, and S. Kasahara, J. Mol. Spectrosc., 321, 23 (2016)

Fut2-null mice display an altered glycosylation profile and impaired BabA-mediated Helicobacter pylori adhesion to gastric mucosa

PubMed Central

Magalhães, Ana; Gomes, Joana; Ismail, Mohd Nazri; Haslam, Stuart M; Mendes, Nuno; Osório, Hugo; David, Leonor; Le Pendu, Jacques; Haas, Rainer; Dell, Anne; Borén, Thomas; Reis, Celso A

2009-01-01

Glycoconjugates expressed on gastric mucosa play a crucial role in host–pathogen interactions. The FUT2 enzyme catalyzes the addition of terminal α(1,2)fucose residues, producing the H type 1 structure expressed on the surface of epithelial cells and in mucosal secretions of secretor individuals. Inactivating mutations in the human FUT2 gene are associated with reduced susceptibility to Helicobacter pylori infection. H. pylori infects over half the world's population and causes diverse gastric lesions, from gastritis to gastric cancer. H. pylori adhesion constitutes a crucial step in the establishment of a successful infection. The BabA adhesin binds the Leb and H type 1 structures expressed on gastric mucins, while SabA binds to sialylated carbohydrates mediating the adherence to inflamed gastric mucosa. In this study, we have used an animal model of nonsecretors, Fut2-null mice, to characterize the glycosylation profile and evaluate the effect of the observed glycan expression modifications in the process of H. pylori adhesion. We have demonstrated expression of terminal difucosylated glycan structures in C57Bl/6 mice gastric mucosa and that Fut2-null mice showed marked alteration in gastric mucosa glycosylation, characterized by diminished expression of α(1,2)fucosylated structures as indicated by lectin and antibody staining and further confirmed by mass spectrometry analysis. This altered glycosylation profile was further confirmed by the absence of Fucα(1,2)-dependent binding of calicivirus virus-like particles. Finally, using a panel of H. pylori strains, with different adhesin expression profiles, we have demonstated an impairment of BabA-dependent adhesion of H. pylori to Fut2-null mice gastric mucosa, whereas SabA-mediated binding was not affected. PMID:19706747

Characteristics of broadband slow earthquakes explained by a Brownian model

NASA Astrophysics Data System (ADS)

Ide, S.; Takeo, A.

2017-12-01

Brownian slow earthquake (BSE) model (Ide, 2008; 2010) is a stochastic model for the temporal change of seismic moment release by slow earthquakes, which can be considered as a broadband phenomena including tectonic tremors, low frequency earthquakes, and very low frequency (VLF) earthquakes in the seismological frequency range, and slow slip events in geodetic range. Although the concept of broadband slow earthquake may not have been widely accepted, most of recent observations are consistent with this concept. Then, we review the characteristics of slow earthquakes and how they are explained by BSE model. In BSE model, the characteristic size of slow earthquake source is represented by a random variable, changed by a Gaussian fluctuation added at every time step. The model also includes a time constant, which divides the model behavior into short- and long-time regimes. In nature, the time constant corresponds to the spatial limit of tremor/SSE zone. In the long-time regime, the seismic moment rate is constant, which explains the moment-duration scaling law (Ide et al., 2007). For a shorter duration, the moment rate increases with size, as often observed for VLF earthquakes (Ide et al., 2008). The ratio between seismic energy and seismic moment is constant, as shown in Japan, Cascadia, and Mexico (Maury et al., 2017). The moment rate spectrum has a section of -1 slope, limited by two frequencies corresponding to the above time constant and the time increment of the stochastic process. Such broadband spectra have been observed for slow earthquakes near the trench axis (Kaneko et al., 2017). This spectrum also explains why we can obtain VLF signals by stacking broadband seismograms relative to tremor occurrence (e.g., Takeo et al., 2010; Ide and Yabe, 2014). The fluctuation in BSE model can be non-Gaussian, as far as the variance is finite, as supported by the central limit theorem. Recent observations suggest that tremors and LFEs are spatially characteristic

Drosophila DH31 Neuropeptide and PDF Receptor Regulate Night-Onset Temperature Preference

PubMed Central

Goda, Tadahiro; Tang, Xin; Umezaki, Yujiro; Chu, Michelle L.

2016-01-01

Body temperature exhibits rhythmic fluctuations over a 24 h period (Refinetti and Menaker, 1992) and decreases during the night, which is associated with sleep initiation (Gilbert et al., 2004; Kräuchi, 2007a,b). However, the underlying mechanism of this temperature decrease is largely unknown. We have previously shown that Drosophila exhibit a daily temperature preference rhythm (TPR), in which their preferred temperatures increase during the daytime and then decrease at the transition from day to night (night-onset) (Kaneko et al., 2012). Because Drosophila are small ectotherms, their body temperature is very close to that of the ambient temperature (Stevenson, 1985), suggesting that their TPR generates their body temperature rhythm. Here, we demonstrate that the neuropeptide diuretic hormone 31 (DH31) and pigment-dispersing factor receptor (PDFR) contribute to regulate the preferred temperature decrease at night-onset. We show that PDFR and tethered-DH31 expression in dorsal neurons 2 (DN2s) restore the preferred temperature decrease at night-onset, suggesting that DH31 acts on PDFR in DN2s. Notably, we previously showed that the molecular clock in DN2s is important for TPR. Although PDF (another ligand of PDFR) is a critical factor for locomotor activity rhythms, Pdf mutants exhibit normal preferred temperature decreases at night-onset. This suggests that DH31-PDFR signaling specifically regulates a preferred temperature decrease at night-onset. Thus, we propose that night-onset TPR and locomotor activity rhythms are differentially controlled not only by clock neurons but also by neuropeptide signaling in the brain. SIGNIFICANCE STATEMENT Body temperature rhythm (BTR) is fundamental for the maintenance of functions essential for homeostasis, such as generating metabolic energy and sleep. One major unsolved question is how body temperature decreases dramatically during the night. Previously, we demonstrated that a BTR-like mechanism, referred to as temperature

Estimating slip deficit of the North Anatolian Fault beneath the Sea of Marmara, Turkey, using on- and off-shore geodetic data

NASA Astrophysics Data System (ADS)

Yamamoto, R.; Kido, M.; Ohta, Y.; Takahashi, N.; Yamamoto, Y.; Kalafat, D.; Pinar, A.; Ozener, H.; Ozeren, M. S.; Yoshiyuki, K.

2016-12-01

The North Anatolian Fault (NAF) in the northern Turkey regionally has right-lateral strike-slip motion. In the last decade, seismic activities have been migrating from east to west along the fault. In 1999, Izmit and Duzce Earthquakes were respectively occurred at 100 km and 200 km east of Istanbul, while it remains un-ruptured in the vicinity of Istanbul beneath the Sea of Marmara. In this region, onshore geodetic tools cannot be used and we instead used "seafloor acoustic extensometers" to detect slip deficit rate across the western part of the NAF (around 27.7 °E). A pair of extensometers can periodically measure precise range (about 3-4 mm precision per 1 km baseline) by observing round-trip time of acoustic signal between the two. We installed four instruments in September 2014 and an additional one in March 2015 across the NAF. We have recovered data for about 600-days through acoustic modem. By correcting travel-times for sound velocity using concurrently measured temperature, pressure and tilt change of instruments, we obtained 8-10 ±1 mm/yr of right-lateral movement at the site. Combing the result with on-shore GNSS data across the Sea of Marmara, we constructed a possible fault model. According to the model in Kaneko et al. (2013), we simply assume a bimodal slip condition on the fault plane that infinitely continues to the E-W direction; full-creep (25 mm/yr as is given at infinite distant from the fault plane) deeper than 15 km and applied an overriding partially locked layer (17 mm/yr slip deficit as is obtained by extensometers). We calculated 2-D displacement field in a homogeneous elastic half-space medium. With this model, N-S variation of on-shore GNSS data across the Sea of Marmara can be reasonably explained. However, due to the lack of GNSS site near the fault plane, constraint on the depth of the partially locked layer is not sufficient. We have newly installed GNSS sites, one of which is closer to the fault plane ( 10 km) than before and

EDITORIAL: Nanotechnology in motion Nanotechnology in motion

NASA Astrophysics Data System (ADS)

Demming, Anna

2012-02-01

Microscopes provide tools of inimitable value for probing the building blocks of the world around us. The identity of the inventor of the first microscope remains under debate, but a name unequivocally linked with early developments in microscopy is Robert Hooke. His Micrographia published in 1665, was the first ever bestseller in science and brought topics in microscopy to the broader public eye with pages of detailed micrographs, most famously the fly's eye and plant cells. Since the first microscopes in the late 16th century, ingenious alternatives to the original optical microscopes have been developed to create images of the world at ever smaller dimensions. Innovations include scanning probe techniques such as the atomic force microscope [1]. As Toshio Ando describes in a review in this issue [2], these devices have also entered a new era in the past decade with the development of high-speed atomic force microscopy. Now, we can not only see the nanoscale components that make up the world around us, but we can watch them at work. One of the first innovations in optical microscopy was the use of dyes. This principle first came into practice with the use of ultraviolet light to reveal previously indistinguishable features. As explained by a researcher in the early 1930s, 'It is obvious that if the dyes used for selective staining in ordinary microscopical work are supplemented by substances which cause a particular detail of the structure to fluoresce with a specific colour in ultraviolet light, then many strings will be added to the bow of the practical microscopist' [3]. More recently, emphasis on the role of plasmons—collective oscillations of electrons in nanoscale metal structures—has received considerable research attention. Plasmons enhance the local electromagnetic field and can lead to increased fluorescence rates from nearby fluorophores depending on the efficiency of the counteracting process, non-radiative transfer [4]. The 1930s also saw the

Hydrocarbon potential, structural setting and depositional environments of Hammam Faraun Member of the Belayim Formation, Southern Gulf of Suez, Egypt

NASA Astrophysics Data System (ADS)

Nabawy, Bassem S.; El Sharawy, Mohamed S.

2015-12-01

The Middle Miocene Belayim Formation is one of the most prolific formations in the Southern Gulf of Suez. It consists of four members; two members are evaporitic (Baba and Feiran) and the other two members are prospective, mostly clastics (Hammam Faraun and Sidri). The hydrocarbon potential and depositional environment of Hammam Faraun Member, the target of the present study, have been studied in 11 wells distributed in the southern province of the Gulf of Suez. The traditional well log data, as well as the Spectral Gamma-Ray logs 'SGR' and dipmeter data were used to evaluate the petrophysical properties and distribution of the Hammam Faraun Member in the Southern Gulf of Suez. It varies greatly in thickness with the greatest thicknesses in GS 365 (372 ft) and GS 373 (430 ft) fields in the central parts and the thinnest at the basin margins of the studied area at GH376 (65 ft) and Ras El Bahar (67.5 ft) fields. It is composed of clastic rocks, mainly shales and sometimes reef carbonates. The very good petrophysical properties of the studied sequence indicate a good reservoir in some fields with good to very good porosity (13.5 ≤ ∅ ≤ 25.0%). The shale volume of this reservoir sequence is less than 33% and the water saturation is less than 42.3%, while the net-pay thickness is up to 58 ft. The SGR and Pe logs indicate that, the studied rocks were deposited mostly in lagoonal to shallow marine environments, with illite and montmorillonite as dominant clay minerals. The dipmeter data obtained in some wells indicate slightly tilted beds, mostly less than 20° with an overall dip direction towards the SW, which represents the regional dip in the Southern Gulf of Suez. Based on dipmeter data, two major angular unconformities can be detected; one at the top of the sequence, separating it from the overlying South Gharib evaporates, and another one at the base of the sequence, separating it from the underlying Feiran Member.

Drosophila DH31 Neuropeptide and PDF Receptor Regulate Night-Onset Temperature Preference.

PubMed

Goda, Tadahiro; Tang, Xin; Umezaki, Yujiro; Chu, Michelle L; Kunst, Michael; Nitabach, Michael N; Hamada, Fumika N

2016-11-16

Body temperature exhibits rhythmic fluctuations over a 24 h period (Refinetti and Menaker, 1992) and decreases during the night, which is associated with sleep initiation (Gilbert et al., 2004; Kräuchi, 2007a,b). However, the underlying mechanism of this temperature decrease is largely unknown. We have previously shown that Drosophila exhibit a daily temperature preference rhythm (TPR), in which their preferred temperatures increase during the daytime and then decrease at the transition from day to night (night-onset) (Kaneko et al., 2012). Because Drosophila are small ectotherms, their body temperature is very close to that of the ambient temperature (Stevenson, 1985), suggesting that their TPR generates their body temperature rhythm. Here, we demonstrate that the neuropeptide diuretic hormone 31 (DH31) and pigment-dispersing factor receptor (PDFR) contribute to regulate the preferred temperature decrease at night-onset. We show that PDFR and tethered-DH31 expression in dorsal neurons 2 (DN2s) restore the preferred temperature decrease at night-onset, suggesting that DH31 acts on PDFR in DN2s. Notably, we previously showed that the molecular clock in DN2s is important for TPR. Although PDF (another ligand of PDFR) is a critical factor for locomotor activity rhythms, Pdf mutants exhibit normal preferred temperature decreases at night-onset. This suggests that DH31-PDFR signaling specifically regulates a preferred temperature decrease at night-onset. Thus, we propose that night-onset TPR and locomotor activity rhythms are differentially controlled not only by clock neurons but also by neuropeptide signaling in the brain. Body temperature rhythm (BTR) is fundamental for the maintenance of functions essential for homeostasis, such as generating metabolic energy and sleep. One major unsolved question is how body temperature decreases dramatically during the night. Previously, we demonstrated that a BTR-like mechanism, referred to as temperature preference rhythm (TPR

Pacific Array of, by and for Global Deep Earth Research

NASA Astrophysics Data System (ADS)

Kawakatsu, H.

2016-12-01

Recent advances in ocean bottom geophysical observations, together with advances in the analysis methodology, have now enabled us to resolve the regional 1-D structure of the entire lithosphere- asthenosphere system (LAS), from the surface to a depth of ˜200km, including seismic anisotropy (azimuthal), with deployments of ˜10-15 BBOBSs & OBEMs each for a year or so (Takeo et al, 2013, 2016; Baba et al., 2013; Lin et al. 2016). Thus the in-situ characterization of the physical properties of the entire oceanic LAS without a priori assumption for the shallow-most structure, the assumption often made for global studies, has become possible. We are now entering a new stage that a large scale array experiment in the ocean (e.g., Pacific Array: http://gachon.eri.u-tokyo.ac.jp/ hitosi/PArray/) has become approachable: having 10-15 BBOBSs as an array unit for a 1-2-year deployment, and repeating such deployments in a leap-frog way or concurrently (an array of arrays) for a decade or so would enable us to cover a large portion of the Pacific basin. Such array observations not only by giving regional constraints on the 1-D structure (including seismic anisotropy), but also by sharing waveform data for global scale waveform tomography (e.g., Fichtner et al. 2010; French et al. 2013; Zhu & Tromp 2013), would drastically increase our knowledge of how plate tectonics works beneath oceanic basins, as well as of the large scale picture of the interior of the Earth. For such an array of arrays to be realized, international collaboration seems essential. If three or four countries collaborate together, it may be achieved within a 10-year time frame that makes this concept attractive. It is also essential that global seismology, geodynamics, and deep earth (GSGD) communities work closely with the ocean science community for Pacific Array to be realized, as they would get most benefit from it. While unit array deployments may have their own scientific goals, it is important that they

The Perception of Stress Pattern in Young Cochlear Implanted Children: An EEG Study.

PubMed

Vavatzanidis, Niki K; Mürbe, Dirk; Friederici, Angela D; Hahne, Anja

2016-01-01

Children with sensorineural hearing loss may (re)gain hearing with a cochlear implant-a device that transforms sounds into electric pulses and bypasses the dysfunctioning inner ear by stimulating the auditory nerve directly with an electrode array. Many implanted children master the acquisition of spoken language successfully, yet we still have little knowledge of the actual input they receive with the implant and specifically which language sensitive cues they hear. This would be important however, both for understanding the flexibility of the auditory system when presented with stimuli after a (life-) long phase of deprivation and for planning therapeutic intervention. In rhythmic languages the general stress pattern conveys important information about word boundaries. Infant language acquisition relies on such cues and can be severely hampered when this information is missing, as seen for dyslexic children and children with specific language impairment. Here we ask whether children with a cochlear implant perceive differences in stress patterns during their language acquisition phase and if they do, whether it is present directly following implant stimulation or if and how much time is needed for the auditory system to adapt to the new sensory modality. We performed a longitudinal ERP study, testing in bimonthly intervals the stress pattern perception of 17 young hearing impaired children (age range: 9-50 months; mean: 22 months) during their first 6 months of implant use. An additional session before the implantation served as control baseline. During a session they passively listened to an oddball paradigm featuring the disyllable "baba," which was stressed either on the first or second syllable (trochaic vs. iambic stress pattern). A group of age-matched normal hearing children participated as controls. Our results show, that within the first 6 months of implant use the implanted children develop a negative mismatch response for iambic but not for trochaic

A web-based survey of erection hardness score and its relationship to aging, sexual behavior, confidence, and risk factors in Japan.

PubMed

Kimura, Masaki; Shimura, Satoru; Tai, Toshihiro; Kobayashi, Hideyuki; Baba, Shiro; Kano, Munehide; Nagao, Koichi

2013-12-01

Erection hardness is an elemental component of men's sexual quality of life that can be easily measured by the Erection Hardness Score (EHS). However, there are few published data regarding EHS, and there is little understanding of its relationships to aging, men's sexual behavior, sexual confidence, and risk factors in Japan. To assess EHS and how it correlates to aging, sexual behaviors, sexual self-confidence, and risk factors in a Japanese population database. A web-based cross-sectional nationwide survey conducted between March and May 2009 in Japan. EHS, lifestyle factors, comorbidities, general health, sexual confidence, frequency of sexual behaviors, and attitudes toward treatment of erectile dysfunction (ED). A total of 7,710 men with a mean age of 39.3 ± 13.0 years participated in this survey. In 6,528 participants who were not using phosphodiesterase type 5 inhibitors, 3,540 (54.2%) had EHS ≤ 3 and 1,196 (18.3%) had EHS ≤ 2. We found a significant age-dependent decrease in EHS, sexual confidence, and frequency of sexual activities. Sexual confidence was strongly associated with higher EHS but was also associated with older age groups, presence of offspring, awareness of better general health, and greater frequency of sexual activity. In age-adjusted multivariate logistic regression, risk factors for a lower EHS (defined as EHS ≤ 2) were heavy smoking, which was defined as more than two packs per day (odds ratio [OR], 1.7) or a history of metabolic syndrome (OR, 1.4), hypertension (OR, 1.2), and diabetes mellitus (OR, 1.4). EHS correlates to various elements, such as aging, sexual behaviors, sexual confidence, and ED-related risk factors, and can be a valuable tool in clinical practice for monitoring and treating ED and thereby improving the quality of life for men and their sexual partners. Kimura M, Shimura S, Tai T, Kobayashi H, Baba S, Kano M, and Nagao K. A web-based survey of Erection Hardness Score and its relationship to aging, sexual

A Web-Based Survey of Erection Hardness Score and Its Relationship to Aging, Sexual Behavior, Confidence, and Risk Factors in Japan

PubMed Central

Kimura, Masaki; Shimura, Satoru; Tai, Toshihiro; Kobayashi, Hideyuki; Baba, Shiro; Kano, Munehide; Nagao, Koichi

2013-01-01

Introduction Erection hardness is an elemental component of men's sexual quality of life that can be easily measured by the Erection Hardness Score (EHS). However, there are few published data regarding EHS, and there is little understanding of its relationships to aging, men's sexual behavior, sexual confidence, and risk factors in Japan. Aim To assess EHS and how it correlates to aging, sexual behaviors, sexual self-confidence, and risk factors in a Japanese population database. Methods A web-based cross-sectional nationwide survey conducted between March and May 2009 in Japan. Main Outcome Measures EHS, lifestyle factors, comorbidities, general health, sexual confidence, frequency of sexual behaviors, and attitudes toward treatment of erectile dysfunction (ED). Results A total of 7,710 men with a mean age of 39.3 ± 13.0 years participated in this survey. In 6,528 participants who were not using phosphodiesterase type 5 inhibitors, 3,540 (54.2%) had EHS ≤ 3 and 1,196 (18.3%) had EHS ≤ 2. We found a significant age-dependent decrease in EHS, sexual confidence, and frequency of sexual activities. Sexual confidence was strongly associated with higher EHS but was also associated with older age groups, presence of offspring, awareness of better general health, and greater frequency of sexual activity. In age-adjusted multivariate logistic regression, risk factors for a lower EHS (defined as EHS ≤ 2) were heavy smoking, which was defined as more than two packs per day (odds ratio [OR], 1.7) or a history of metabolic syndrome (OR, 1.4), hypertension (OR, 1.2), and diabetes mellitus (OR, 1.4). Conclusions EHS correlates to various elements, such as aging, sexual behaviors, sexual confidence, and ED-related risk factors, and can be a valuable tool in clinical practice for monitoring and treating ED and thereby improving the quality of life for men and their sexual partners. Kimura M, Shimura S, Tai T, Kobayashi H, Baba S, Kano M, and Nagao K. A web-based survey of

Taking centre stage...

NASA Astrophysics Data System (ADS)

1998-11-01

HAMLET (Highly Automated Multimedia Light Enhanced Theatre) was the star performance at the recent finals of the `Young Engineer for Britain' competition, held at the Commonwealth Institute in London. This state-of-the-art computer-controlled theatre lighting system won the title `Young Engineers for Britain 1998' for David Kelnar, Jonathan Scott, Ramsay Waller and John Wyllie (all aged 16) from Merchiston Castle School, Edinburgh. HAMLET replaces conventional manually-operated controls with a special computer program, and should find use in the thousands of small theatres, schools and amateur drama productions that operate with limited resources and without specialist expertise. The four students received a £2500 prize between them, along with £2500 for their school, and in addition they were invited to spend a special day with the Royal Engineers. A project designed to improve car locking systems enabled Ian Robinson of Durham University to take the `Working in industry award' worth £1000. He was also given the opportunity of a day at sea with the Royal Navy. Other prizewinners with their projects included: Jun Baba of Bloxham School, Banbury (a cardboard armchair which converts into a desk and chair); Kobika Sritharan and Gemma Hancock, Bancroft's School, Essex (a rain warning system for a washing line); and Alistair Clarke, Sam James and Ruth Jenkins, Bishop of Llandaff High School, Cardiff (a mechanism to open and close the retractable roof of the Millennium Stadium in Cardiff). The two principal national sponsors of the competition, which is organized by the Engineering Council, are Lloyd's Register and GEC. Industrial companies, professional engineering institutions and educational bodies also provided national and regional prizes and support. During this year's finals, various additional activities took place, allowing the students to surf the Internet and navigate individual engineering websites on a network of computers. They also visited the

PREFACE: 12th International Symposium on Multiscale, Multifunctional and Functionally Graded Materials (FGM 2012)

NASA Astrophysics Data System (ADS)

Zhou, Zhangjian; Li, Jingfeng; Zhang, Lianmeng; Ge, Changchun

2013-03-01

Technology, and was supported by National Natural Science Foundation of China. On behalf of the organizing committee of FGM-2012, I express my great appreciation to their support of the symposium. Nearly 100 scholars and students from Japan, Brazil, Germany, Russia, United States of America, Portugal, France, Switzerland, Turkey, Singapore, China, and so on, attended FGM-2012, and 57 of the presented papers were collected and selected for publication. The subjects of these papers cover simulation and characterization, advanced fabrication technology, novel application of FGM and layer materials. I cordially thank all of the authors and attendees for their support, and my appreciation is also given to the advisory committee, organizing committee, and the conference volunteers for their hard work. Professor Zhangjian Zhou Proceedings Editor Beijing, December 2012 Committees International Advisory Committee Professor Glaucio H Paulino, USA Professor Marek-Jerzy Pindera, USA Professor Jeong-Ho Kim, USA Professor Emer Fazil Erdogan, USA Professor Dr Monika Willert-Porada, Germany Professor Emer Wolfgang G J Bunk, Germany Professor Omer Van Der Biest, Belgium Professor Michael M Gasik, Finland Professor Evgeny Levashov, Russia Professor Lianmeng Zhang, China Professor Qingjie Zhang, China Professor Wei Pan, China Professor Chang-Chun Ge, China Professor Jing-Feng Li, China Professor Zhangjian Zhou, China Associate Professor Serkan Dag, Turkey Professor Fernando A Rochinha, Brazil Professor Emilio C N Silva, Brazil Professor Luis August Rocha, Portugal Dr Sasa Novak, Slovenia Dr Masayuki Niino, Japan Professor Akira Kawasaki, Japan Professor Ichiro Shiota, Japan Dr Akinaga Kumakawa, Japan Dr Yoshikazu Shinohara, Japan Professor Kiyotaka Matsuura, Japan Professor Yoshinari Miyamoto, Japan Professor Takashi Goto, Japan Professor Yoshimi Watanabe, Japan Professor Kazuhiro Hasezaki, Japan Professor Soshu Kirihara, Japan Professor Emer Toshio Hirai, Japan Mr Choji Endou, Japan Dr

A rapid calculation system for tsunami propagation in Japan by using the AQUA-MT/CMT solutions

NASA Astrophysics Data System (ADS)

Nakamura, T.; Suzuki, W.; Yamamoto, N.; Kimura, H.; Takahashi, N.

2017-12-01

We developed a rapid calculation system of geodetic deformations and tsunami propagation in and around Japan. The system automatically conducts their forward calculations by using point source parameters estimated by the AQUA system (Matsumura et al., 2006), which analyze magnitude, hypocenter, and moment tensors for an event occurring in Japan in 3 minutes of the origin time at the earliest. An optimized calculation code developed by Nakamura and Baba (2016) is employed for the calculations on our computer server with 12 core processors of Intel Xeon 2.60 GHz. Assuming a homogeneous fault slip in the single fault plane as the source fault, the developed system calculates each geodetic deformation and tsunami propagation by numerically solving the 2D linear long-wave equations for the grid interval of 1 arc-min from two fault orientations simultaneously; i.e., one fault and its conjugate fault plane. Because fault models based on moment tensor analyses of event data are used, the system appropriately evaluate tsunami propagation even for unexpected events such as normal faulting in the subduction zone, which differs with the evaluation of tsunami arrivals and heights from a pre-calculated database by using fault models assuming typical types of faulting in anticipated source areas (e.g., Tatehata, 1998; Titov et al., 2005; Yamamoto et al., 2016). By the complete automation from event detection to output graphical figures, the calculation results can be available via e-mail and web site in 4 minutes of the origin time at the earliest. For moderate-sized events such as M5 to 6 events, the system helps us to rapidly investigate whether amplitudes of tsunamis at nearshore and offshore stations exceed a noise level or not, and easily identify actual tsunamis at the stations by comparing with obtained synthetic waveforms. In the case of using source models investigated from GNSS data, such evaluations may be difficult because of the low resolution of sources due to a low

Boundary current instabilities, upwelling, shelf mixing and eutrophication processes in the Black Sea

NASA Astrophysics Data System (ADS)

Sur, Hali˙l. İ.; Özsoy, Emi˙n.; Ünlüata, Ümi˙t.

divergence of the boundary current, and sequences of satellite data indicate the role of transient dynamics. The in situ data showed the upwelling centres to be devoid of phytoplankton as well as fish eggs and larvae. The AVHRR and in situ hydrographic data in winter 1990 indicate cold water is formed over the entire western Black Sea continental shelf. The band of cold water decreases in width as it moves south and impinges on the headland at Baba Burnu, where it undergoes a sudden expansion. The maximum winter phytoplankton bloom sampled during the same period indicates explosive populations of diatoms following the band of cold water.

Chinese culture and demographic trends in Thailand and Malaysia.

PubMed

Barbie, J

1992-01-01

The Chinese nationality contributes to over 5 million of 10% of the total population of Thailand and almost 35% of the total population of Malaysia. The aim of this paper is to summarize the nature and extent of Chinese influence on Thai and Malay culture. Migration of Chinese to southeast Asia dates back 2000 years; on the Malay peninsula, the first arrivals were in 1349. In Malaysia, arrivals began in the 15th century. The reasons were population pressure, floods, and famines. Social and political unrest also accounted for migration between 1855 and 1970. The Chinese in Malaysia are characterized as having a lower population growth rate than Malays and an abnormal sex ratio of 1000:930 in 1957, but severe ratios of 8 men to 1 woman in the 1820s. Islam forbids intermarriages. The Chinese have benefited from improvement in health care and had a low birth rate of 25/1000 in 1980. Migration has traditionally been from south China, and included migrations from Fujian, Hakkas, Guangdong, Chaozhou, and Hainan. The Chinese have maintained their own culture among the Muslim population. In Thailand, migrations occurred during the 13th century, following the collapse of Nan-Chao in 1253, but are first recorded during the Ming dynasty at the end of the 16th century. There are larger numbers of Chinese in Thailand than Malaysia. Chinese assimilated and the current rate of annual growth is estimated at 2%. The sex ratio was 1.4:1 in the late 1940s. 50% of the Chinese live in Bangkok and central Thailand. Older traditions are still maintained in Bangkok. There is the Chaozhou opera on Chinese New Year's Day and marriage is still preferred within one's own dialect. After 1946, the Chinese were not permitted to receive their education in their native language. By the third generation, there is greater assimilation. The minority of minorities in Malaysia were the Baba, who spoke better Malay than other Chinese. In Thailand, the comparable minority is the Yunnan who do not belong

Tsunami Source Modeling of the 2015 Volcanic Tsunami Earthquake near Torishima, South of Japan

NASA Astrophysics Data System (ADS)

Sandanbata, O.; Watada, S.; Satake, K.; Fukao, Y.; Sugioka, H.; Ito, A.; Shiobara, H.

2017-12-01

An abnormal earthquake occurred at a submarine volcano named Smith Caldera, near Torishima Island on the Izu-Bonin arc, on May 2, 2015. The earthquake, which hereafter we call "the 2015 Torishima earthquake," has a CLVD-type focal mechanism with a moderate seismic magnitude (M5.7) but generated larger tsunami waves with an observed maximum height of 50 cm at Hachijo Island [JMA, 2015], so that the earthquake can be regarded as a "tsunami earthquake." In the region, similar tsunami earthquakes were observed in 1984, 1996 and 2006, but their physical mechanisms are still not well understood. Tsunami waves generated by the 2015 earthquake were recorded by an array of ocean bottom pressure (OBP) gauges, 100 km northeastern away from the epicenter. The waves initiated with a small downward signal of 0.1 cm and reached peak amplitude (1.5-2.0 cm) of leading upward signals followed by continuous oscillations [Fukao et al., 2016]. For modeling its tsunami source, or sea-surface displacement, we perform tsunami waveform simulations, and compare synthetic and observed waveforms at the OBP gauges. The linear Boussinesq equations are adapted with the tsunami simulation code, JAGURS [Baba et al., 2015]. We first assume a Gaussian-shaped sea-surface uplift of 1.0 m with a source size comparable to Smith Caldera, 6-7 km in diameter. By shifting source location around the caldera, we found the uplift is probably located within the caldera rim, as suggested by Sandanbata et al. [2016]. However, synthetic waves show no initial downward signal that was observed at the OBP gauges. Hence, we add a ring of subsidence surrounding the main uplift, and examine sizes and amplitudes of the main uplift and the subsidence ring. As a result, the model of a main uplift of around 1.0 m with a radius of 4 km surrounded by a ring of small subsidence shows good agreement of synthetic and observed waveforms. The results yield two implications for the deformation process that help us to understanding

Origin of conductivity anomalies in the asthenosphere

NASA Astrophysics Data System (ADS)

Yoshino, T.; Zhang, B.

2013-12-01

Electrical conductivity anomalies with anisotropy parallel to the plate motion have been observed beneath the oceanic lithosphere by electromagnetic studies (e.g., Evans et al., 2005; Baba et al., 2010; Naif et al., 2013). Electrical conductivity of the oceanic asthenosphere at ~100 km depth is very high, about 10-2 to 10-1 S/m. This zone is also known in seismology as the low velocity zone. Since Karato (1990) first suggested that electrical conductivity is sensitive to water content in NAMs, softening of asthenosphere has been regarded as a good indicator for constraining the distribution of water. There are two difficulties to explain the observed conductivity features in the asthenosphere. Recent publications on electrical conductivity of hydrous olivine suggested that olivine with the maximum soluble H2O content at the top of the asthenosphere has much lower conductivity less than 0.1 S/m (e.g., Yoshino et al., 2006; 2009a; Poe et al., 2010; Du Frane and Tyburczy, 2012; Yang, 2012), which is a typical value of conductivity anomaly observed in the oceanic mantle. Partial melting has been considered as an attractive agent for substantially raising the conductivity in this region (Shankland and Waff, 1977), because basaltic melt has greater electrical conductivity (> 100.5 S/m) and high wetting properties. However, dry mantle peridotite cannot reach the solidus temperature at depth 100 km. Volatile components can dramatically reduce melting temperature, even if its amount is very small. Recent studies on conductivity measurement of volatile-bearing melt suggest that conductivity of melt dramatically increases with increasing volatile components (H2O: Ni et al., 2010a, b; CO2: Gaillard et al., 2008; Yoshino et al., 2010; 2012a). Because incipient melt includes higher amount of volatile components, conductivity enhancement by the partial melt is very effective at temperatures just above that of the volatile-bearing peridotite solidus. In this study, the electrical

The onset of the volcanism in the Ciomadul Volcanic Dome Complex (Eastern Carpathians): Eruption chronology and magma type variation

NASA Astrophysics Data System (ADS)

Molnár, Kata; Harangi, Szabolcs; Lukács, Réka; Dunkl, István; Schmitt, Axel K.; Kiss, Balázs; Garamhegyi, Tamás; Seghedi, Ioan

2018-04-01

Combined zircon U-Th-Pb and (U-Th)/He dating was applied to refine the eruption chronology of the last 2 Myr for the andesitic and dacitic Pilişca volcano and Ciomadul Volcanic Dome Complex (CVDC), the youngest volcanic area of the Carpathian-Pannonian region, located in the southernmost Harghita, eastern-central Europe. The proposed eruption ages, which are supported also by the youngest zircon crystallization ages, are much younger than the previously determined K/Ar ages. By dating every known eruption center in the CVDC, repose times between eruptive events were also accurately determined. Eruption of the andesite at Murgul Mare (1865 ± 87 ka) and dacite of the Pilişca volcanic complex (1640 ± 37 ka) terminated an earlier pulse of volcanic activity within the southernmost Harghita region, west of the Olt valley. This was followed by the onset of the volcanism in the CVDC, which occurred after several 100s kyr of eruptive quiescence. At ca. 1 Ma a significant change in the composition of erupted magma occurred from medium-K calc-alkaline compositions to high-K dacitic (Baba-Laposa dome at 942 ± 65 ka) and shoshonitic magmas (Malnaş and Bixad domes; 964 ± 46 ka and 907 ± 66 ka, respectively). Noteworthy, eruptions of magmas with distinct chemical compositions occurred within a restricted area, a few km from one another. These oldest lava domes of the CVDC form a NNE-SSW striking tectonic lineament along the Olt valley. Following a brief (ca. 100 kyr) hiatus, extrusion of high-K andesitic magma continued at Dealul Mare (842 ± 53 ka). After another ca. 200 kyr period of quiescence two high-K dacitic lava domes extruded (Puturosul: 642 ± 44 ka and Balvanyos: 583 ± 30 ka). The Turnul Apor lava extrusion occurred after a ca. 200 kyr repose time (at 344 ± 33 ka), whereas formation of the Haramul Mic lava dome (154 ± 16 ka) represents the onset of the development of the prominent Ciomadul volcano. The accurate determination of eruption dates shows that the

Upward extension of the Nankai accretionary prism megasplay fault into slope basin strata. Insights from drilling at IODP Expedition 338 Site C0022

NASA Astrophysics Data System (ADS)

Fabbri, O.; Oohashi, K.; Kanagawa, K.; Yamaguchi, A.

2013-12-01

Megasplay faults have been recognized on seismic reflection profiles across several convergent margins in the world. Understanding the behavior of these faults during large to very large inter-plate earthquakes is a major challenge in assessing strong-motion and tsunami hazards at or near subduction zones. One of the goals of the IODP NanTroSEIZE project is to drill across and to obtain data from the megasplay fault crossing the Nankai accretionary prism off Kii peninsula (Kumano transect), SW Japan. This fault is considered to have been activated during the 1944 Tonankai earthquake (Baba et al., 2006 ; Moore et al., 2007). Drilling and coring during IODP Expedition 316 (Expedition 316 Scientists, 2009) showed that the megasplay fault at 300 mbsf at Site C0004 consists in a 60 m thick package of fractured and brecciated rocks. Combined analysis of 3D reflection data in the vicinity of Site C0004 and core data from sites C0004 and C0008 (Strasser et al., 2009 ; Kimura et al., 2011) suggest that the lower boundary of the megasplay fault ceased activity at about 1.55 Ma while its upper boundary has remained active since about 1.95 Ma and probably 1.24 Ma. In order to determine whether the megasplay fault upper boundary crosscuts slope sediments or is sealed by them, drilling at IODP Site C0022 was carried out during Expedition 338. Two 420 m deep holes were drilled: C0022A (LWD) and C0022B (coring). At Hole C0022A, LWD resistivity images show that the 85-105.5 mbsf interval is fractured and extends above and below a ca. 1 m thick interval characterized by a low resistivity value at 100-101 mbsf. Structures observed in cores from Hole C0022B confirm LWD data. While gently dipping elsewhere, bedding in the 73-146 mbsf interval is steep, commonly exceeding 30°. This bedding dip increase may be a consequence of fault activity (folding ?). Though the low-resistivity interval at 100-101 mbsf could not be sampled at Hole C0022B (no recovery between 95.5 and 99.5 mbsf

The volcanic and tectonic history of Enceladus

USGS Publications Warehouse

Kargel, J.S.; Pozio, S.

1996-01-01

reaccretion of Enceladus. Another area of cratered plains has modified craters (e.g., Ali Baba and Aladdin), which some workers have explained by anomalous heat flow and viscous relaxation; lateral shear and shield-building volcanism also may have been important. A young rift-like structure (northern Samarkand Sulci) has few craters and a concentration of cracks or grabens and flattened, flooded, and rifted craters. Pit chains and cratered domes suggest explosive volcanism. Smooth plains may have formed by cryovolcanic equivalents of flood-basalt volcanism. Pure H2O would be difficult to extrude through an icy crust and is cosmochemically improbable as a cryovolcanic agent. Density relations rule out eutectic brine lavas on Enceladus, but NH3-H2O volcanism is possible. Current steady-state tidal dissipation may cause melting of ammonia hydrate at a depth of ???25 km if the crust is made of ammonia hydrate or ???100 km if it is made of water ice. ?? 1996 Academic Press, Inc.

Sizing up Septoria

PubMed Central

Quaedvlieg, W.; Verkley, G.J.M.; Shin, H.-D.; Barreto, R.W.; Alfenas, A.C.; Swart, W.J.; Groenewald, J.Z.; Crous, P.W.

2013-01-01

Quaedvlieg, Verkley, W.J. Swart & Crous, Xenobotryosphaeria calamagrostidis Quaedvlieg, Verkley & Crous, Xenoseptoria neosaccardoi Quaedvlieg, H.D. Shin, Verkley & Crous. New combinations - Parastagonospora avenae (A.B. Frank) Quaedvlieg, Verkley & Crous, Parastagonospora nodorum (Berk.) Quaedvlieg, Verkley & Crous, Phaeosphaeria papayae (Speg.) Quaedvlieg, Verkley & Crous, Pseudocercospora domingensis (Petr. & Cif.) Quaedvlieg, Verkley & Crous, Ruptoseptoria unedonis (Roberge ex Desm.) Quaedvlieg, Verkley & Crous, Septorioides pini-thunbergii (S. Kaneko) Quaedvlieg, Verkley & Crous, Sphaerulina abeliceae (Hiray.) Quaedvlieg, Verkley & Crous, Sphaerulina azaleae (Voglino) Quaedvlieg, Verkley & Crous, Sphaerulina berberidis (Niessl) Quaedvlieg, Verkley & Crous, Sphaerulina betulae (Pass.) Quaedvlieg, Verkley & Crous, Sphaerulina cercidis (Fr.) Quaedvlieg, Verkley & Crous, Sphaerulina menispermi (Thüm.) Quaedvlieg, Verkley & Crous, Sphaerulina musiva (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina oxyacanthae (Kunze & J.C. Schmidt) Quaedvlieg, Verkley & Crous, Sphaerulina patriniae (Miura) Quaedvlieg, Verkley & Crous, Sphaerulina populicola (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina quercicola (Desm.) Quaedvlieg, Verkley & Crous, Sphaerulina rhabdoclinis (Butin) Quaedvlieg, Verkley & Crous, Stromatoseptoria castaneicola (Desm.) Quaedvlieg, Verkley & Crous. Typifications: Epitypifications - Phaeosphaeria oryzae I. Miyake, Phaeoseptoria papayae Speg.; Neotypification - Hendersonia paludosa Sacc. & Speg. PMID:24014902

EDITORIAL: Photonic Crystal Devices

NASA Astrophysics Data System (ADS)

Bhattacharya, Pallab K.

2007-05-01

glimpse of some of the most recent advances in the application of photonic crystals. The modelling of PC defect-mode cavities are described by Zhou et al. Ye and co-authors describe the concept and realization of a novel 3D silicon-based spiral PC. It is, in fact, the only article on 3D PCs. The design and realization of ultra-high Q heterostructure PC nanocavities are described by Song and co-authors. The concept of self-collimation of light in PCs and its applications are presented by Prather and co-workers. Experimental and numerical studies on the negative refraction related phenomenon in 2D PCs are the subject of the next article by Ozbay and co-authors. The emerging subject of slow light generation, control and propagation in PCs is presented in the next two articles by Baba and Mori and by Krauss. Finally, the progress made in the development of PC microcavity lasers and electrically injected microcavity light emitters and arrays is described, respectively, by O'Brien et al and by Chakravarty et al. It is hoped that readers will get a sense of the exciting developments and the possibilities presented by heterostructure photonic crystals and their devices from reading the articles in this Cluster.

Was the Sun especially active at the end of the late glacial epoch?

NASA Astrophysics Data System (ADS)

Alekseeva, Liliya

In their pioneering work, the geophysicists A. Brekke and A. Egeland (1983) collected beliefs of different peoples, associated with northern lights. Our analyses of this collection show that these beliefs are mainly related to the mythological idea of ``abnormal'' deads (dead, childless old maids in Finnish beliefs; killed people; spirits dangerous to children). We find similar motifs in Slavic fairy tales about the ``Thrice-Nine Land,'' regarded as the other world in folkloric studies (in the Land where mobile and agitated warlike girls live, whose Head Girl is characterized by the words ``white snow, pretty light, the prettiest in the World,'' but whose name ``Mariya Morevna'' refers to the word ``mort''; where a river flows with its banks covered by human bones; where the witch Baba-Yaga dwells, being extremely dangerous for children). Moreover, it can be noted that similar narrative fabulous myths deal with the concept of auroral oval northern lights, since some specific features of the natural auroral forms are mentioned there, with their particular spatial orientations (to the North or West). This resembles the manner in which Ancient Greek myths describe the real properties of the heavenly phenomena in a mythological language. It is interesting that myths on the high-latitude northern lights spread even to the South of Europe (and, might be, to India and Iran). This fact can be understood in view of the following. It has been established that, during the late glacial epoch, the environmental and cultural conditions were similar over the area from Pyrenean to the Ural Mountains; the pattern of hunters' settlements outlined the glacial sheet from the outside. Relics of the hunters' beliefs can now be found in Arctic, where the environment and lifestyle remain nearly unchanged. The ethnographer Yu.B. Simchenko (1976) has reconstructed the most archaic Arctic myths. According to them, the World of dead is associated with the world of ice governed by the ``Ice

The relationship between continental collision process and metamorphic pattern in the Himalayan collision belts

NASA Astrophysics Data System (ADS)

Oh, Chang-Whan

2015-04-01

Both UHP and HP eclogites are reported from the Kaghan Valley and Tso Morari Massif in the western part of the Himalayan collision belt (Ghazanfar and Chaudhry, 1987; Thakur, 1983). UHP eclogites in the Kaghan record peak metamorphic conditions of 770 °C and 30 kbar (O'Brien et al., 2001) and was retrograded into the epidote-amphibolite or blueschist (580-610 °C, 10-13 kbar; Lombardo and Rolfo, 2000). Sensitive high-resolution ion microprobe dating of zircon reveals that the UHP eclogite formed at ca. 46 Ma (Kaneko et al., 2003; Parrish et al., 2006). The Tso Morari UHP eclogite had formed at 750 °C, > 39 kbar (Mukheerjee et al., 2003; Bundy, 1980) and underwent amphibolite facies retro-grade metamorphism (580 °C, 11 kbar) during uplift (Guillot et al., 2008). Peak metamorphism of the Tso Morari Massif was dated at ca. 53-55 Ma (Leech et al., 2005). Only HP eclogites have been reported from the mid-eastern part of the Himalayan collision belt (Lombardo and Rolfo, 2000; Corrie et al., 2010). The HP eclogite in the mid-eastern part may have formed at ca. > 780 °C and 20 kbar and was overprinted by high-pressure granulite facies metamorphism (780-750°C, 12-10 kbar) at ca. 30 Ma (Groppo et al. 2007; Corrie et al., 2010). HP granulite (890 °C, 17-18 kbar) is reported from the NBS, at the eastern terminus of the Himalayan collision belt; the granulite was subjected to retrograde metamorphism to produce lower-pressure granulite (875-850°C, 10-5 kbar), representing near-isothermal decompression (Liu and Zhong, 1997). The HP granulite metamorphism may have occurred at ca. 22-25 Ma. Along the Himalayan collision belt, peak metamorphism changes eastward from UHP eclogite facies through HP eclogite facies to high-pressure granulite facies, indicating a progressive eastwards decrease in the depth of subduction of continental crust and an eastwards increase in the geothermal gradient. The peak metamorphic ages also decrease from 53-46 Ma in the west to 22-25 Ma in the

List of Participants

NASA Astrophysics Data System (ADS)

2011-09-01

KhodelVictorKurchatov Institute, Moscowvak@wuphys.wustl.edu KimuraMasaakiHokkaido University, Sapporomasaaki@nucl.sci.hokudai.ac.jp LacroixDenisGANIL, Caenlacroix@ganil.fr LiangHaozhaoPeking University, Beijinghzliang@pku.edu.cn MargueronJérômeIPN Orsayjerome.margueron@ipno.in2p3.fr MassotElisabethIPN Orsaymassot@ipno.in2p3.fr MengJiePeking University, Beijingmengj@pku.edu.cn MillerTomaszWarsaw University of Technologymillert@student.mini.pw.edu.pl MoghrabiKassemIPN Orsaymoghrabi@ipno.in2p3.fr NapolitaniPaoloIPN Orsaynapolita@ipno.in2p3.fr NeffThomasGSI Darmstadtt.neff@gsi.de NguyenVan GiaiIPN Orsaynguyen@ipno.in2p3.fr OtsukaTakaharuUniversity of Tokyootsuka@phys.s.u-tokyo.ac.jp PilletNathalie-MarieCEA-DAM, Arpajonnathalie.pillet@cea.fr QiChongKTH Stockholmchongq@kth.se RamananSunethraICTP Triestesramanan@ictp.it RingPeterTU Munichring@ph.tum.de Rios HuguetArnauUniversity of Surreya.rios@surrey.ac.uk RivetMarie-FranceIPN Orsayrivet@ipno.in2p3.fr RobledoLuisUniversidad Autonoma de Madridluis.robledo@uam.es Roca MazaXavierINFN Milanoxavier.roca.maza@mi.infn.it RöpkeGerdRostock Universitygerd.roepke@uni-rostock.de RowleyNeilIPN Orsayrowley@ipno.in2p3.fr SagawaHiroyukiUniversity of Aizusagawa@u-aizu.ac.jp SandulescuNicolaeIFIN-HH, Bucharestsandulescu@theory.nipne.ro SchuckPeterIPN Orsayschuck@ipno.in2p3.fr SedrakianArmenGoethe Universität Frankfurtsedrakian@th.physik.uni-frankfurt.de SeveryukhinAlexeyJINR Dubnasever@theor.jinr.ru SogoTakaakiIPN Orsaysogo@ipno.in2p3.fr SomàVittorioCEA Saclayvittorio.soma@cea.fr StrinatiGiancarloUniversità di Camerinogiancarlo.strinati@gmail.com SuharaTadahiroKyoto Universitysuhara@ruby.scphys.kyoto-u.ac.jp SukhoruchkinSergeiPetersburg Nuclear Physics Institutesergeis@pnpi.spb.ru SuzukiToruTokyo Metropolitan Universitysuzukitr@tmu.ac.jp SuzukiToshioNihon University, Tokyosuzuki@chs.nihon-u.ac.jp TarpanovDimitarINRNE, Sofiadimitert@yahoo.co.uk Tohsaki-SuzukiAkihiroOsaka Universitytohsaki@rcnp.osaka-u.ac.jp TypelStefanGSI Darmstadts

EDITORIAL: Focus on Heavy Ions in Biophysics and Medical Physics FOCUS ON HEAVY IONS IN BIOPHYSICS AND MEDICAL PHYSICS

NASA Astrophysics Data System (ADS)

Durante, Marco

2008-07-01

include carcinogenesis, late degenerative tissue effects (including damage to the central nervous system), and hereditary effects. For these studies, microbeams represent an essential tool, considering that in space each cell in the human body will not experience more than one heavy-ion traversal. Both NASA and ESA are investing important resources in ground-based space radiation research programs, to reduce risk uncertainty and to develop countermeasures. For both cancer therapy and space radiation protection a better understanding of the effects of energetic heavy ions is needed. Physics should be improved, especially the measurements of nuclear fragmentation cross-sections, and the transport calculations. Biological effects need to be studied in greater detail, and clearly only understanding the mechanisms of heavy-ion induced biological damage will reduce the uncertainty on late effects in humans. This focus issue of New Journal of Physics aims to provide the state-of-the-art of the biophysics of energetic heavy ions and to highlight the areas where more research is urgently needed for therapy and the space program. Focus on Heavy Ions in Biophysics and Medical Physics Contents Heavy ion microprobes: a unique tool for bystander research and other radiobiological applications K O Voss, C Fournier and G Taucher-Scholz Heavy ions light flashes and brain functions: recent observations at accelerators and in spaceflight L Narici Clinical advantages of carbon-ion radiotherapy Hirohiko Tsujii, Tadashi Kamada, Masayuki Baba, Hiroshi Tsuji, Hirotoshi Kato, Shingo Kato, Shigeru Yamada, Shigeo Yasuda, Takeshi Yanagi, Hiroyuki Kato, Ryusuke Hara, Naotaka Yamamoto and Junetsu Mizoe Heavy-ion effects: from track structure to DNA and chromosome damage F Ballarini, D Alloni, A Facoetti and A Ottolenghi Shielding experiments with high-energy heavy ions for spaceflight applications C Zeitlin, S Guetersloh, L Heilbronn, J Miller, N Elkhayari, A Empl, M LeBourgeois, B W Mayes, L Pinsky

EDITORIAL: Outgoing Editor-in-Chief Outgoing Editor-in-Chief

NASA Astrophysics Data System (ADS)

Hauptmann, Peter

2012-01-01

biological, medical and life science applications or sensors and sensing systems. Selected papers or special features in recent issues of MST attest to this development [1-3]. In parallel with these new fields, board members have always kept their eye on the other journal topics. Many papers published in MST have been downloaded very often and highly cited. This shows the acceptance and reputation of MST. Thanks to the activity of all board members over the last ten years MST has published a number of excellent review articles. This has strengthened the prestige of MST. A new series of articles was introduced under the banner of 'Perspectives' in 2008. They highlight milestones in a selected field and indicate some future challenges from the point of view of the author [4]. In summary, it can be stated that MST is on a good path. This was created thanks to the activity of all members of the Editorial Board. In recent years we have enlarged this board with well known scientists from universities and industry from all over the world. This will ensure a continuously positive development of MST. As outgoing Editor-in-Chief, I can say that I have found my task fascinating and I have enjoyed it very much. I have learned a lot in this time because I have come into close contact with a large number of scientists from a vast spectrum of technical areas and parts of our world. My special gratitude is dedicated to all the Editorial Board members of the last ten years and especially to Sharon D'Souza from IOPP. Furthermore, I would like to pass on to my successor, Professor David Birch from University of Strathclyde, Glasgow, my best wishes for an enjoyable and successful tenure as Editor-in-Chief! References [1] Tanaka M, Baba T and Postek M T 2011 Nanometrology Meas. Sci. Technol. 22 020101 [2] Potyrailo R A et al 2011 RFID sensors as the common sensing platform for single-use biopharmaceutical manufacturing Meas. Sci. Technol. 22 082001 [3] Fritze H 2011 High-temperature bulk

EDITORIAL: Scanning probe microscopy: a visionary development Scanning probe microscopy: a visionary development

NASA Astrophysics Data System (ADS)

Demming, Anna

2013-07-01

The development of scanning probe microscopy repositioned modern physics. When Rohrer and Binnig first used electronic tunnelling effects to image atoms and quantum states they did more than pin down theoretical hypotheses to real-world observables; the scanning tunnelling microscope fed imaginations, prompting researchers to consider new directions and possibilities [1]. As Rohrer once commented, 'We could show that you can easily manipulate or position something small in space with an accuracy of 10 pm.... When you can do that, you simply have ideas of what you can do' [2]. The development heralded a cavalry of scanning probe techniques—such as atomic force microscopy (AFM) [3-5], scanning near-field optical microscopy (SNOM) [6-8] and Kelvin probe force microscopy (KPFM) [9, 10]—that still continue to bring nanomaterials and nanoscale phenomena into fresh focus. Not long after the development of scanning tunnelling microscopy, Binnig, Quate and Gerber collaborating in California in the US published work on a new type of microscope also capable of atomic level resolution [3]. The original concept behind scanning tunnelling microscopy uses electrical conductance, which places substantial limitations on the systems that it can image. Binnig, Quate and Gerber developed the AFM to 'feel' the topology of surfaces like the needle of an old fashioned vinyl player. In this way insulators could be imaged as well. The development of a force modulation mode AFM extended the tool's reach to soft materials making images of biological samples accessible with the technique [4]. There have now been a number of demonstrations of image capture at rates that allow dynamics at the nanoscale to be tracked in real time, opening further possibilities in applications of the AFM as described in a recent review by Toshio Ando at Kanazawa University [5]. Researchers also found a way to retrieve optical information at 'super-resolution' [6, 7]. Optical microscopy provides spectral

[Tuberculosis care and new horizon of Japanese society].

PubMed

Ishikawa, Nobukatsu; Nagayama, Naohiro

2012-04-01

disease', 'appropriate DOTS method for each patient', 'existence of side effects', or 'the relationship between treatment supporters'. Through working for the patients whose treatment management was difficult, we have learned that our attitude towards the patients is a most important first step to build a good relationship and mutual trust with the patients, and DOT is an important tool. For treatment supporters,'the patient-centered care', 'care by staying close to the patients' or 'cuddling the patient' s mind' is most necessary to lead the patients to cure. 5. Patient's view: Through DOTS, my life has been renewed: Kuniyoshi MAEDA (Himawari no kai; Ex-homeless TB patients self-help group). It is an unforgettable memory that I was hospitalized due to TB back in 2009. I was seriously ill with also diabetes mellitus. Because I had lost everything due to my friend's cheating, I could not trust anyone before the TB treatment. But I learned how to think of others through the daily communication with doctors, nurses, other staff at the hospital, and Public Health Center. They encouraged me every day and I came to desire to answer to their expectations. Public health nurses taught me that building the reliable relationship is so essential for humans, and I may not have realized this importance if I had not been treated for TB, or treated outside Shinjuku. I would rather say that I was lucky to have got TB, as I have become able to trust other people through DOTS TB care. DOTS is not only for medication, but also general health care and counseling. I hope that as many as poor people, especially homeless can have a similar experience by knowing more about TB and using a health service. I would like to cooperate with TB services if I can be useful. health: Toshio TAKATORIGE (Graduate School of Safety Science, Kansai University). Tuberculosis was ever the biggest health problem in Japan. Ministry of Health and Welfare and Public Health Centers were founded to push forward

PREFACE: 13th International Conference on Electrorheological Fluids and Magnetorheological Suspensions (ERMR2012)

NASA Astrophysics Data System (ADS)

Unal, Halil Ibrahim

2013-02-01

China) gave plenary talks on novel MR shear thickening fluids, MR rubber composites and MR plastomers, respectively. H J Choi (INHA University, Korea), X Zhao (Northwestern Polytechnical University, China) and R Tao (Temple University, USA) delivered plenary lectures on issues relating to the area of electrorheological (ER) fluids. In their talks, Choi and Zhao covered novel ER materials with core-shell structured microspheres and micro/nano hierarchical structured titania particles, respectively, and Tao focused on the reduction of the viscosity of liquid suspensions for energy applications in transporting crude oil via pipelines. Attendance of the presentations was exceptionally high. Poster presentations were divided into two sessions and held in the afternoons after the close of the sessions, which were filled with stimulating discussions. The award for the best student research in the area of electrorheological fluids, sponsored by the Winslow family, was given to Y D Liu of INHA University, Korea on research entitled 'Copolyaniline coated monodisperse polystyrene microparticles and their electrorheological response'. The award for the best student research on magnetorheological suspensions, sponsored by the LORD Corporation, was given to S Kaneko of Keio University, Japan on research entitled 'Effect of a magnetic field on sloshing pressure in a magnetic fluid'. Besides the purely scientific program during the five days, some special events were also organized. A guided tour of the old city and some important landmarks of the capital city of Ankara were organized before the Gala Dinner. Special samples of Turkish classical music and folk dancing were performed by a group from the Republic of Turkey Ministry of Culture and Tourism to exhibit Turkish culture to the delegates at Gala Night, which was truly appreciated. Following the conclusion of this successful meeting, the next conference is expected to be organized at the University of Granada, Spain by Professor

EDITORIAL: Multitasking in nanotechnology Multitasking in nanotechnology

NASA Astrophysics Data System (ADS)

Demming, Anna

2013-06-01

resonance imaging and cancer treatment by hyperthermia. The introduction of scanning probe microscopy in the 1980s transposed the physics of nanoscale structures from elegant mathematical hypotheses to concrete observables. But if seeing is believing, control is power. Atomic force microscope probes could also be adopted as patterning devices, empowering researchers to manipulate the nanoworld to exacting designs [6]. There is even a report of early graphene fabrication from highly oriented pyrolytic graphite using this approach [7]. One of the natural advantages of patterning with a microscope probe is the opportunity for real-time monitoring of the process [8], and such dual functionality may be applied to current state of the art high-speed atomic force microscopy systems. With the 'coming of age' of high-speed atomic force microscopy, it is now possible to record movies of biological systems at the nanoscale to reveal the processes governing these systems in action [9]. As Toshio Ando explains in his recent review of the field, attempts at manipulating samples with the same probe used for high-speed atomic force microscopy imaging have already been reported. The vista of possibilities this opens includes the potential to observe the re-assembly of biological systems following deliberate breaking and the examination of complicated molecular architectures. The escalating interest in nanoscale research opened the flood gates for ZnO studies, as the community became captivated by the potential application of the nanomaterial's electronic properties in transparent electrodes in liquid crystal displays, thin-film transistors and light-emitting diodes. Zinc oxide's piezoelectric properties have also inspired researchers to investigate the energy harvesting potential of these structures [10]. The functions can be combined to produce self-powered vibration [11] and gas [1] sensing devices. In the sensor reported by Zhong Lin Wang and his colleagues in this issue, the Zn