Numerical Estimation of the Outer Bank Resistance Characteristics in AN Evolving Meandering River

NASA Astrophysics Data System (ADS)

Wang, D.; Konsoer, K. M.; Rhoads, B. L.; Garcia, M. H.; Best, J.

2017-12-01

Few studies have examined the three-dimensional flow structure and its interaction with bed morphology within elongate loops of large meandering rivers. The present study uses a numerical model to simulate the flow pattern and sediment transport, especially the flow close to the outer-bank, at two elongate meandering loops in Wabash River, USA. The numerical grid for the model is based on a combination of airborne LIDAR data on floodplains and the multibeam data within the river channel. A Finite Element Method (FEM) is used to solve the non-hydrostatic RANS equation using a K-epsilon turbulence closure scheme. High-resolution topographic data allows detailed numerical simulation of flow patterns along the outer bank and model calibration involves comparing simulated velocities to ADCP measurements at 41 cross sections near this bank. Results indicate that flow along the outer bank is strongly influenced by large resistance elements, including woody debris, large erosional scallops within the bank face, and outcropping bedrock. In general, patterns of bank migration conform with zones of high near-bank velocity and shear stress. Using the existing model, different virtual events can be simulated to explore the impacts of different resistance characteristics on patterns of flow, sediment transport, and bank erosion.

Forecasting Inflow and Outflow of Money Currency in East Java Using a Hybrid Exponential Smoothing and Calendar Variation Model

NASA Astrophysics Data System (ADS)

Susanti, Ana; Suhartono; Jati Setyadi, Hario; Taruk, Medi; Haviluddin; Pamilih Widagdo, Putut

2018-03-01

Money currency availability in Bank Indonesia can be examined by inflow and outflow of money currency. The objective of this research is to forecast the inflow and outflow of money currency in each Representative Office (RO) of BI in East Java by using a hybrid exponential smoothing based on state space approach and calendar variation model. Hybrid model is expected to generate more accurate forecast. There are two studies that will be discussed in this research. The first studies about hybrid model using simulation data that contain pattern of trends, seasonal and calendar variation. The second studies about the application of a hybrid model for forecasting the inflow and outflow of money currency in each RO of BI in East Java. The first of results indicate that exponential smoothing model can not capture the pattern calendar variation. It results RMSE values 10 times standard deviation of error. The second of results indicate that hybrid model can capture the pattern of trends, seasonal and calendar variation. It results RMSE values approaching the standard deviation of error. In the applied study, the hybrid model give more accurate forecast for five variables : the inflow of money currency in Surabaya, Malang, Jember and outflow of money currency in Surabaya and Kediri. Otherwise, the time series regression model yields better for three variables : outflow of money currency in Malang, Jember and inflow of money currency in Kediri.

A new variable-resolution associative memory for high energy physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Annovi, A.; Amerio, S.; Beretta, M.

2011-07-01

We describe an important advancement for the Associative Memory device (AM). The AM is a VLSI processor for pattern recognition based on Content Addressable Memory (CAM) architecture. The AM is optimized for on-line track finding in high-energy physics experiments. Pattern matching is carried out by finding track candidates in coarse resolution 'roads'. A large AM bank stores all trajectories of interest, called 'patterns', for a given detector resolution. The AM extracts roads compatible with a given event during detector read-out. Two important variables characterize the quality of the AM bank: its 'coverage' and the level of fake roads. The coverage,more » which describes the geometric efficiency of a bank, is defined as the fraction of tracks that match at least one pattern in the bank. Given a certain road size, the coverage of the bank can be increased just adding patterns to the bank, while the number of fakes unfortunately is roughly proportional to the number of patterns in the bank. Moreover, as the luminosity increases, the fake rate increases rapidly because of the increased silicon occupancy. To counter that, we must reduce the width of our roads. If we decrease the road width using the current technology, the system will become very large and extremely expensive. We propose an elegant solution to this problem: the 'variable resolution patterns'. Each pattern and each detector layer within a pattern will be able to use the optimal width, but we will use a 'don't care' feature (inspired from ternary CAMs) to increase the width when that is more appropriate. In other words we can use patterns of variable shape. As a result we reduce the number of fake roads, while keeping the efficiency high and avoiding excessive bank size due to the reduced width. We describe the idea, the implementation in the new AM design and the implementation of the algorithm in the simulation. Finally we show the effectiveness of the 'variable resolution patterns' idea using simulated high occupancy events in the ATLAS detector. (authors)« less

From Shelf to Shelf: Assessing Historical and Contemporary Genetic Differentiation and Connectivity across the Gulf of Mexico in Gag, Mycteroperca microlepis

PubMed Central

Jue, Nathaniel K.; Brulé, Thierry; Coleman, Felicia C.; Koenig, Christopher C.

2015-01-01

Describing patterns of connectivity among populations of species with widespread distributions is particularly important in understanding the ecology and evolution of marine species. In this study, we examined patterns of population differentiation, migration, and historical population dynamics using microsatellite and mitochondrial loci to test whether populations of the epinephelid fish, Gag, Mycteroperca microlepis, an important fishery species, are genetically connected across the Gulf of Mexico and if so, whether that connectivity is attributable to either contemporary or historical processes. Populations of Gag on the Campeche Bank and the West Florida Shelf show significant, but low magnitude, differentiation. Time since divergence/expansion estimates associated with historical population dynamics indicate that any population or spatial expansions indicated by population genetics would have likely occurred in the late Pleistocene. Using coalescent-based approaches, we find that the best model for explaining observed spatial patterns of contemporary genetic variation is one of asymmetric gene flow, with movement from Campeche Bank to the West Florida Shelf. Both estimated migration rates and ecological data support the hypothesis that Gag populations throughout the Gulf of Mexico are connected via present day larval dispersal. Demonstrating this greatly expanded scale of connectivity for Gag highlights the influence of “ghost” populations (sensu Beerli) on genetic patterns and presents a critical consideration for both fisheries management and conservation of this and other species with similar genetic patterns. PMID:25856095

Spatio-temporal variation in a seed bank of a semi-arid region in northeastern Brazil

NASA Astrophysics Data System (ADS)

da Silva, Kleber A.; dos Santos, Danielle M.; dos Santos, Josiene M. F. F.; de Albuquerque, Ulysses P.; Ferraz, Elba M. N.; Araújo, Elcida de L.

2013-01-01

This study aimed to evaluate variations in the seed bank within a 3-year temporal series in order to answer the following questions: 1) Does the seed bank's species richness and seed density differ among climatic seasons and between years? 2) Are there differences in the richness and density of seed banks between the litter and mineral soil? 3) Can the seed bank's species richness and seed density be explained by characteristics such as the previous year's precipitation and soil depth (litter or mineral soil)? The samples were collected from litter and mineral soil (0-5 cm), in 210 sub-plots, during the dry and rainy seasons of each year (August 2005 through February 2008). Overall, 79 species were recorded. On average, 1 168, 304 and 302 seeds.m-2 were recorded in the seed bank during years I, II and III, respectively. This study showed that the Caatinga's seed bank is rich in herbaceous species, yet species' density and richness are low in the litter. Furthermore, about 43% of the variation in species richness and density was explained by soil depth (litter and mineral soil) and previous years' rainfall.

Time related variations in stem cell harvesting of umbilical cord blood

NASA Astrophysics Data System (ADS)

Mazzoccoli, Gianluigi; Miscio, Giuseppe; Fontana, Andrea; Copetti, Massimiliano; Francavilla, Massimo; Bosi, Alberto; Perfetto, Federico; Valoriani, Alice; de Cata, Angelo; Santodirocco, Michele; Totaro, Angela; Rubino, Rosa; di Mauro, Lazzaro; Tarquini, Roberto

2016-02-01

Umbilical cord blood (UCB) contains hematopoietic stem cells and multipotent mesenchymal cells useful for treatment in malignant/nonmalignant hematologic-immunologic diseases and regenerative medicine. Transplantation outcome is correlated with cord blood volume (CBV), number of total nucleated cells (TNC), CD34+ progenitor cells and colony forming units in UCB donations. Several studies have addressed the role of maternal/neonatal factors associated with the hematopoietic reconstruction potential of UCB, including: gestational age, maternal parity, newborn sex and birth weight, placental weight, labor duration and mode of delivery. Few data exist regarding as to how time influences UCB collection and banking patterns. We retrospectively analyzed 17.936 cord blood donations collected from 1999 to 2011 from Tuscany and Apulia Cord Blood Banks. Results from generalized multivariable linear mixed models showed that CBV, TNC and CD34+ cell were associated with known obstetric and neonatal parameters and showed rhythmic patterns in different time domains and frequency ranges. The present findings confirm that volume, total nucleated cells and stem cells of the UCB donations are hallmarked by rhythmic patterns in different time domains and frequency ranges and suggest that temporal rhythms in addition to known obstetric and neonatal parameters influence CBV, TNC and CD34+ cell content in UBC units.

Effect of seasonal flooding cycle on litterfall production in alluvial rainforest on the middle Xingu River (Amazon basin, Brazil).

PubMed

Camargo, M; Giarrizzo, T; Jesus, A J S

2015-08-01

The assumption for this study was that litterfall in floodplain environments of the middle Xingu river follows a pattern of seasonal variation. According to this view, litterfall production (total and fractions) was estimated in four alluvial rainforest sites on the middle Xingu River over an annual cycle, and examined the effect of seasonal flooding cycle. The sites included two marginal flooded forests of insular lakes (Ilha Grande and Pimentel) and two flooded forests on the banks of the Xingu itself (Boa Esperança and Arroz Cru). Total litterfall correlated with rainfall and river levels, but whereas the leaf and fruit fractions followed this general pattern, the flower fraction presented an inverse pattern, peaking in the dry season. The litterfall patterns recorded in the present study were consistent with those recorded at other Amazonian sites, and in some other tropical ecosystems.

Morphology filter bank for extracting nodular and linear patterns in medical images.

PubMed

Hashimoto, Ryutaro; Uchiyama, Yoshikazu; Uchimura, Keiichi; Koutaki, Gou; Inoue, Tomoki

2017-04-01

Using image processing to extract nodular or linear shadows is a key technique of computer-aided diagnosis schemes. This study proposes a new method for extracting nodular and linear patterns of various sizes in medical images. We have developed a morphology filter bank that creates multiresolution representations of an image. Analysis bank of this filter bank produces nodular and linear patterns at each resolution level. Synthesis bank can then be used to perfectly reconstruct the original image from these decomposed patterns. Our proposed method shows better performance based on a quantitative evaluation using a synthesized image compared with a conventional method based on a Hessian matrix, often used to enhance nodular and linear patterns. In addition, experiments show that our method can be applied to the followings: (1) microcalcifications of various sizes in mammograms can be extracted, (2) blood vessels of various sizes in retinal fundus images can be extracted, and (3) thoracic CT images can be reconstructed while removing normal vessels. Our proposed method is useful for extracting nodular and linear shadows or removing normal structures in medical images.

Effect of pre-planting irrigation, maize planting pattern and nitrogen on weed seed bank population.

PubMed

Hemmati, E; Vazan, S; Oveisi, M

2011-01-01

Pre-planting irrigation and planting patterns are important factors in weed management that effect on seed bank. Additionally, the nitrogen is the most important factor in plant growth that affects weed-crop competition and ultimately, seed rain into the soil. A field experiment was conducted to study the effect of nitrogen application rates, pre-planting irrigation and maize planting patterns on weed seed bank population. Experimental factors were nitrogen rates at 4 levels (200, 300, 400 and 500 kg per hectare) as main plot; and pre-planting irrigation at 2 levels (irrigation before planting plus weeding emerged seedlings and, irrigation after sowing), and maize planting patterns (one-row and two-row planting of maize with same density per square of row length) that were assigned in a factorial arrangement to the sub plots. Soil samples were taken at the beginning of the season (before planting of maize) and at the end of the season (after harvest) at depth of 0-5 cm in the fixed quadrates (60 cm x 60 cm). The weed seeds were extracted from the soil samples and were identified using standard methods. The majority of weed seed bank populations included 6 weed species: Portulaca oleracea, Chenopodium album, Amaranthus retroflexus, Sorghum halepense, Daturea stramonium, Xanthium strumarium. Results showed that population of weed seed bank increased significantly with increasing nitrogen rate. The increasing rate was different between one-row and two-row planting patterns. The parameters indicated that seed bank population was much higher in a one row planting pattern of maize. With two-row planting, seed bank was decreased by 34, 26, 20 and 5% at 200, 300, 400 and 500 kg N/ha, respectively. Pre-planting irrigation was also found an effective implement to reduce the weed seed bank. When pre-planting irrigation was applied, seed bank was decreased by 57, 43, 34 and 9% at 200, 300, 400 and 500 kg N/ha. Increasing nitrogen because of weed's better growth and higher seed production neutralized the decreasing effect of pre-planting irrigation and two-row planting of maize on weed seed bank population.

[Seasonal dynamics and vertical distribution pattern of bud bank in different erosion environments on hilly-gully Loess Plateau of Northwest China].

PubMed

Du, Hua-Dong; Jiao, Ju-Ying; Kou, Meng; Wang, Ning

2013-05-01

This paper studied the vegetation composition, bud composition, and the seasonal dynamics and vertical distribution pattern of bud bank in five erosion environments (sunny gully slope, sunny hilly slope, hilltop, shady hilly slope, and shady gully slope) on the hilly-gully Loess Plateau of North Shaanxi. In the study area, the perennial species with perennial bud bank accounted for 80.3% of the total species, while the annual species with seasonal bud bank took up 19.7% of the total. In vegetation turning-green season, there was a relatively large perennial bud bank stock on the sunny hilly-gully slope where serious erosion occurred, while seasonal bud bank showed a higher bud bank density in blossom and fruit-setting season on the hilltop and two shady slopes where soil erosion intensity was relatively gentle. The proportion of underground bud bank to total perennial bud bank in different erosion environments was relatively stable. On the land surface, the perennial bud bank stock was larger on the sunny slope where the soil disturbance often occurred, whereas the seasonal bud bank stock was larger on the shady slope and hilltop. Due to the different species composition of plant communities in different erosion environments, in addition to the disturbance of soil erosion and the seasonal plant regeneration, the seasonal dynamics and vertical distribution pattern of bud bank changed. It was suggested that bud bank played an important role in the vegetation regeneration after the disturbance of soil erosion on the hilly-gully Loess Plateau of North Shaanxi.

Sediment size of surface floodplain sediments along a large lowland river

NASA Astrophysics Data System (ADS)

Swanson, K. M.; Day, G.; Dietrich, W. E.

2007-12-01

Data on size distribution of surface sediment across a floodplain should place important constraints of modeling of floodplain deposition. Diffusive or advective models would predict that, generally, grain size should decrease away from channel banks. Variations in grain size downstream along floodplains may depend on downstream fining of river bed material, exchange rate with river banks and net deposition onto the floodplain. Here we report detailed grain size analyses taken from 17 floodplain transects along 450 km (along channel distance) reach of the middle Fly River, Papua New Guinea. Field studies have documented a systematic change in floodplain characteristics downstream from forested, more topographically elevated and topography bounded by an actively shifting mainstem channel to a downstream swamp grass, low elevation topography along which the river meanders are currently stagnant. Frequency and duration of flooding increase downstream. Flooding occurs both by overbank flows and by injections of floodwaters up tributary and tie channels connected to the mainstem. Previous studies show that about 40% of the total discharge of water passes across the floodplain, and, correspondingly, about 40% of the total load is deposited on the plain - decreasing exponentially from channel bank. We find that floodplain sediment is most sandy at the channel bank. Grain size rapidly declines away from the bank, but surprisingly two trends were also observed. A relatively short distance from the bank the surface material is finest, but with further distance from the bank (out to greater than 1 km from the 250 m wide channel) clay content decreases and silt content increases. The changes are small but repeated at most of the transects. The second trend is that bank material fines downstream, corresponding to a downstream finding bed material, but once away from the bank, there is a weak tendency for a given distance away from the bank the floodplain surface deposits to slightly coarsen downstream. We also find that sand is present (about 4%) in these surface sediments out to 1 km from the channel bank. These trends are not consistent with simple lateral transport models, and other factors, including effects of flocculation, local flow patterns, and possibly dry season wind effects may matter.

Delineation of spatial-temporal patterns of groundwater/surface-water interaction along a river reach (Aa River, Belgium) with transient thermal modeling

NASA Astrophysics Data System (ADS)

Anibas, Christian; Tolche, Abebe Debele; Ghysels, Gert; Nossent, Jiri; Schneidewind, Uwe; Huysmans, Marijke; Batelaan, Okke

2018-05-01

Among the advances made in analytical and numerical analysis methods to quantify groundwater/surface-water interaction, one methodology that stands out is the use of heat as an environmental tracer. A large data set of river and riverbed temperature profiles from the Aa River in Belgium has been used to examine the spatial-temporal variations of groundwater/surface-water interaction. Exchange fluxes were calculated with the numerical heat-transport code STRIVE. The code was applied in transient mode to overcome previous limitations of steady-state analysis, and allowed for the calculation of model quality. In autumn and winter the mean exchange fluxes reached -90 mm d-1, while in spring and early summer fluxes were -42 mm d-1. Predominantly gaining conditions occurred along the river reach; however, in a few areas the direction of flow changed in time. The river banks showed elevated fluxes up to a factor of 3 compared to the center of the river. Higher fluxes were detected in the upstream section of the reach. Due to the influence of exchange fluxes along the river banks, larger temporal variations were found in the downstream section. The exchange fluxes at the river banks seemed more driven by variable local exchange flows, while the center of the river was dominated by deep and steady regional groundwater flows. These spatial and temporal differences in groundwater/surface-water exchange show the importance of long-term investigations on the driving forces of hyporheic processes across different scales.

Managing the complexity of nurse shortages: a case study of bank and agency staffing in an acute care Trust in Wales, UK.

PubMed

Massey, Lynn; Esain, Ann; Wallis, Marianne

2009-07-01

Managing nurse shortages is a major challenge in Trusts today given the worldwide shortage of nurses. To fill the gap created by a lack of permanent staff UK government agencies have increasingly used bank and agency staff. Managing this type of staffing effectively and efficiently, in the context of shrinking healthcare funds, is a major challenge in providing safe and quality healthcare. To analyse bank and agency nursing staffing patterns and factors that impact on these patterns. Case study within the largest hospital in one Welsh Integrated Healthcare Trust. De-identified bank and agency staffing electronic and manual database records and focus group interview with bank and agency office staff. A predictable bank and agency staffing pattern was found, wherein bank and agency nursing staff were used with increasing frequency towards the end of the week. Demand for bank and agency nursing staff occurred because of: hospital practices that fund a fixed staff establishment for nursing units, while patient numbers and acuity are variable; poor forward planning; sickness, and absence due to professional development or staff training. There is a need for managers to reconsider management and recruitment policies, particularly in relation to using bank and agency staff. The complexity of staffing challenges managers to focus on predictability of workload needs and other factors that affect staffing requirements, such as: professional development, flexible working rosters to match the need and minimize sickness and turnover of staff.

Factors Affecting Mobile Banking Adoption in the United States

ERIC Educational Resources Information Center

Engwanda, Michel Ndongola

2014-01-01

Mobile banking (m-banking) allows consumers to conduct financial transactions without temporal and spatial constraints through Internet-enabled mobile devices such as smartphones. The adoption patterns are of particular research interest because m-banking penetration has been relatively low even though smartphones are the most dominant forms of…

Interaction between the tidal and seasonal variability of the Gulf of Maine and Scotian Shelf region

NASA Astrophysics Data System (ADS)

Katavouta, Anna; Thompson, Keith; Lu, Youyu; Loder, John

2017-04-01

In the Gulf of Maine and Scotian Shelf (off the northeastern coast of North America) tides are large and can alter the local hydrographic properties, circulation, and sea surface height through processes such as tidal rectification, mixing, and horizontal advection. Furthermore, the stratification of the water column can influence tidal elevation and currents over the shelves (e.g., baroclinic tides). To investigate this interaction, a newly developed high resolution (1/36 degree) regional circulation model is used (GoMSS model). First, numerical experiments with and without density stratification are used to demonstrate the influence of stratification on the tides. GoMSS model is then used to interpret the physical mechanisms responsible for the largest seasonal variations in the M2 surface current which occur over, and to the north of, Georges Bank. An alternating pattern of highs and lows in the summer maximum M2 surface speed in the Gulf of Maine is identified, for the first time, in both the model output and observations by a high frequency coastal radar system. This pattern consists of extended striations in tidal speed aligned with the northern flank of Georges Bank that separates the Gulf of Maine from the North Atlantic. The striations are explained in terms of a linear superposition of the barotropic tide flowing across the northern flank of Georges Bank and the reflected, phase-locked baroclinic tide. The striations have amplitudes of about 0.1 m/s and longitudinal length scales of order 100 km, and are thus of practical significance.

Spatial variation in reproductive effort of a southern Australian seagrass.

PubMed

Smith, Timothy M; York, Paul H; Macreadie, Peter I; Keough, Michael J; Ross, D Jeff; Sherman, Craig D H

2016-09-01

In marine environments characterised by habitat-forming plants, the relative allocation of resources into vegetative growth and flowering is an important indicator of plant condition and hence ecosystem health. In addition, the production and abundance of seeds can give clues to local resilience. Flowering density, seed bank, biomass and epiphyte levels were recorded for the temperate seagrass Zostera nigricaulis in Port Phillip Bay, south east Australia at 14 sites chosen to represent several regions with different physicochemical conditions. Strong regional differences were found within the large bay. Spathe and seed density were very low in the north of the bay (3 sites), low in the centre of the bay (2 sites) intermediate in the Outer Geelong Arm (2 sites), high in Swan Bay (2 sites) and very high in the Inner Geelong Arm (3 sites). In the south (2 sites) seed density was low and spathe density was high. These regional patterns were largely consistent for the 5 sites sampled over the three year period. Timing of flowering was consistent across sites, occurring from August until December with peak production in October, except during the third year of monitoring when overall densities were lower and peaked in November. Seagrass biomass, epiphyte load, canopy height and stem density showed few consistent spatial and temporal patterns. Variation in spathe and seed density and morphology across Port Phillip Bay reflects varying environmental conditions and suggests that northern sites may be restricted in their ability to recover from disturbance through sexual reproduction. In contrast, sites in the west and south of the bay have greater potential to recover from disturbances due to a larger seed bank and these sites could act as source populations for sites where seed production is low. Copyright © 2016 Elsevier Ltd. All rights reserved.

Stochastic and deterministic processes regulate spatio-temporal variation in seed bank diversity

Treesearch

Alejandro A. Royo; Todd E. Ristau

2013-01-01

Seed banks often serve as reservoirs of taxonomic and genetic diversity that buffer plant populations and influence post-disturbance vegetation trajectories; yet evaluating their importance requires understanding how their composition varies within and across spatial and temporal scales (α- and β-diversity). Shifts in seed bank diversity are strongly...

Holocene tephrostratigraphy in high-latitude peatlands of the Southern Hemisphere: a link through time?

NASA Astrophysics Data System (ADS)

Roland, T. P.; Amesbury, M. J.; Charman, D.; De Vleeeschouwer, F.; Hodgson, D.; Hughes, P. D. M.; Mauquoy, D.; Piotrowska, N.; Royles, J.; van Bellen, S.; Vanneste, H.

2014-12-01

We present preliminary tephrostratigraphic data from south Patagonian peatlands and moss banks from the Antarctic Peninsula that provide greater chronological constraint to Holocene palaeoclimatic records and increase the potential for inter-regional correlation. Relative to the Northern Hemisphere, there is a paucity of high-resolution, robustly dated Holocene palaeoclimate records in the Southern Hemisphere, limiting our ability to validate climate models in this region and fully understand variation in the global climate system over time. In the absence of long-term instrumental data, multi-proxy (testate amoebae, plant macrofossils, δ13C, δ18O and δD) palaeoclimatic records from south Patagonian peatlands can provide valuable information about the long-term variability of the southern westerlies, a key component in determining the Southern Ocean's function as a sink or source of atmospheric carbon dioxide. Similarly, multi-proxy palaeoclimatic reconstructions from moss banks provide a unique terrestrial palaeoenvironmental archive from the Antarctic Peninsula, where records of past ecological change are rare and provide vital context for the recent, rapid biotic change recorded since the mid-20th century. Robust chronologies are imperative for the accurate examination of spatial and temporal patterns in Holocene climate variation. Previous work has confirmed the presence of discrete tephra horizons in south Patagonian peatlands and Antarctic Peninsula moss banks but the examination of distal, cryptotephras is currently underemployed as a geochronological tool. The chronological potential of these archives is considerable, given their high and largely continuous accumulation rates and suitability for 14C dating, presenting additional opportunities to refine the ages of major Holocene eruptions. Here, we present initial tephrostratigraphic results from both regions and explore the links between them.

Model-based prediction of nephropathia epidemica outbreaks based on climatological and vegetation data and bank vole population dynamics.

PubMed

Haredasht, S Amirpour; Taylor, C J; Maes, P; Verstraeten, W W; Clement, J; Barrios, M; Lagrou, K; Van Ranst, M; Coppin, P; Berckmans, D; Aerts, J-M

2013-11-01

Wildlife-originated zoonotic diseases in general are a major contributor to emerging infectious diseases. Hantaviruses more specifically cause thousands of human disease cases annually worldwide, while understanding and predicting human hantavirus epidemics pose numerous unsolved challenges. Nephropathia epidemica (NE) is a human infection caused by Puumala virus, which is naturally carried and shed by bank voles (Myodes glareolus). The objective of this study was to develop a method that allows model-based predicting 3 months ahead of the occurrence of NE epidemics. Two data sets were utilized to develop and test the models. These data sets were concerned with NE cases in Finland and Belgium. In this study, we selected the most relevant inputs from all the available data for use in a dynamic linear regression (DLR) model. The number of NE cases in Finland were modelled using data from 1996 to 2008. The NE cases were predicted based on the time series data of average monthly air temperature (°C) and bank voles' trapping index using a DLR model. The bank voles' trapping index data were interpolated using a related dynamic harmonic regression model (DHR). Here, the DLR and DHR models used time-varying parameters. Both the DHR and DLR models were based on a unified state-space estimation framework. For the Belgium case, no time series of the bank voles' population dynamics were available. Several studies, however, have suggested that the population of bank voles is related to the variation in seed production of beech and oak trees in Northern Europe. Therefore, the NE occurrence pattern in Belgium was predicted based on a DLR model by using remotely sensed phenology parameters of broad-leaved forests, together with the oak and beech seed categories and average monthly air temperature (°C) using data from 2001 to 2009. Our results suggest that even without any knowledge about hantavirus dynamics in the host population, the time variation in NE outbreaks in Finland could be predicted 3 months ahead with a 34% mean relative prediction error (MRPE). This took into account solely the population dynamics of the carrier species (bank voles). The time series analysis also revealed that climate change, as represented by the vegetation index, changes in forest phenology derived from satellite images and directly measured air temperature, may affect the mechanics of NE transmission. NE outbreaks in Belgium were predicted 3 months ahead with a 40% MRPE, based only on the climatological and vegetation data, in this case, without any knowledge of the bank vole's population dynamics. In this research, we demonstrated that NE outbreaks can be predicted using climate and vegetation data or the bank vole's population dynamics, by using dynamic data-based models with time-varying parameters. Such a predictive modelling approach might be used as a step towards the development of new tools for the prevention of future NE outbreaks. © 2012 Blackwell Verlag GmbH.

Investigating the Construct Measured by Banked Gap-Fill Items: Evidence from Eye-Tracking

ERIC Educational Resources Information Center

McCray, Gareth; Brunfaut, Tineke

2018-01-01

This study investigates test-takers' processing while completing banked gap-fill tasks, designed to test reading proficiency, in order to test theoretically based expectations about the variation in cognitive processes of test-takers across levels of performance. Twenty-eight test-takers' eye traces on 24 banked gap-fill items (on six tasks) were…

Quantifying the past and future impact of climate on outbreak patterns of bank voles (Myodes glareolus).

PubMed

Imholt, Christian; Reil, Daniela; Eccard, Jana A; Jacob, Daniela; Hempelmann, Nils; Jacob, Jens

2015-02-01

Central European outbreak populations of the bank vole (Myodes glareolus Schreber) are known to cause damage in forestry and to transmit the most common type of Hantavirus (Puumala virus, PUUV) to humans. A sound estimation of potential effects of future climate scenarios on population dynamics is a prerequisite for long-term management strategies. Historic abundance time series were used to identify the key weather conditions associated with bank vole abundance, and were extrapolated to future climate scenarios to derive potential long-term changes in bank vole abundance dynamics. Classification and regression tree analysis revealed the most relevant weather parameters associated with high and low bank vole abundances. Summer temperatures 2 years prior to trapping had the highest impact on abundance fluctuation. Extrapolation of the identified parameters to future climate conditions revealed an increase in years with high vole abundance. Key weather patterns associated with vole abundance reflect the importance of superabundant food supply through masting to the occurrence of bank vole outbreaks. Owing to changing climate, these outbreaks are predicted potentially to increase in frequency 3-4-fold by the end of this century. This may negatively affect damage patterns in forestry and the risk of human PUUV infection in the long term. © 2014 Society of Chemical Industry.

Nucleotide variation in the mitochondrial genome provides evidence for dual routes of postglacial recolonization and genetic recombination in the northeastern brook trout (Salvelinus fontinalis).

PubMed

Pilgrim, B L; Perry, R C; Barron, J L; Marshall, H D

2012-09-26

Levels and patterns of mitochondrial DNA (mtDNA) variation were examined to investigate the population structure and possible routes of postglacial recolonization of the world's northernmost native populations of brook trout (Salvelinus fontinalis), which are found in Labrador, Canada. We analyzed the sequence diversity of a 1960-bp portion of the mitochondrial genome (NADH dehydrogenase 1 gene and part of cytochrome oxidase 1) of 126 fish from 32 lakes distributed throughout seven regions of northeastern Canada. These populations were found to have low levels of mtDNA diversity, a characteristic trait of populations at northern extremes, with significant structuring at the level of the watershed. Upon comparison of northeastern brook trout sequences to the publicly available brook trout whole mitochondrial genome (GenBank AF154850), we infer that the GenBank sequence is from a fish whose mtDNA has recombined with that of Arctic charr (S. alpinus). The haplotype distribution provides evidence of two different postglacial founding groups contributing to present-day brook trout populations in the northernmost part of their range; the evolution of the majority of the haplotypes coincides with the timing of glacier retreat from Labrador. Our results exemplify the strong influence that historical processes such as glaciations have had on shaping the current genetic structure of northern species such as the brook trout.

Species-abundance--seed-size patterns within a plant community affected by grazing disturbance.

PubMed

Wu, Gao-lin; Shang, Zhan-huan; Zhu, Yuan-jun; Ding, Lu-ming; Wang, Dong

2015-04-01

Seed size has been advanced as a key factor that influences the dynamics of plant communities, but there are few empirical or theoretical predictions of how community dynamics progress based on seed size patterns. Information on the abundance of adults, seedlings, soil seed banks, seed rains, and the seed mass of 96 species was collected in alpine meadows of the Qinghai-Tibetan Plateau (China), which had different levels of grazing disturbance. The relationships between seed-mass-abundance patterns for adults, seedlings, the soil seed bank, and seed rain in the plant community were evaluated using regression models. Results showed that grazing levels affected the relationship between seed size and abundance properties of adult species, seedlings, and the soil seed bank, suggesting that there is a shift in seed-size--species-abundance relationships as a response to the grazing gradient. Grazing had no effect on the pattern of seed-size-seed-rain-abundance at four grazing levels. Grazing also had little effect on the pattern of seed-size--species-abundance and pattern of seed-size--soil-seed-bank-abundance in meadows with no grazing, light grazing, and moderate grazing), but there was a significant negative effect in meadows with heavy grazing. Grazing had little effect on the pattern of seed-size--seedling-abundance with no grazing, but had significant negative effects with light, moderate, and heavy grazing, and the |r| values increased with grazing levels. This indicated that increasing grazing pressure enhanced the advantage of smaller-seeded species in terms of the abundances of adult species, seedlings, and soil seed banks, whereas only the light grazing level promoted the seed rain abundance of larger-seeded species in the plant communities. This study suggests that grazing disturbances are favorable for increasing the species abundance for smaller-seeded species but not for the larger-seeded species in an alpine meadow community. Hence, there is a clear advantage of the smaller-seeded species over the larger-seeded species with increases in the grazing level.

Three-dimensional flow structure and patterns of bed shear stress in an evolving compound meander bend

USGS Publications Warehouse

Engel, Frank; Rhoads, Bruce L.

2016-01-01

Compound meander bends with multiple lobes of maximum curvature are common in actively evolving lowland rivers. Interaction among spatial patterns of mean flow, turbulence, bed morphology, bank failures and channel migration in compound bends is poorly understood. In this paper, acoustic Doppler current profiler (ADCP) measurements of the three-dimensional (3D) flow velocities in a compound bend are examined to evaluate the influence of channel curvature and hydrologic variability on the structure of flow within the bend. Flow structure at various flow stages is related to changes in bed morphology over the study timeframe. Increases in local curvature within the upstream lobe of the bend reduce outer bank velocities at morphologically significant flows, creating a region that protects the bank from high momentum flow and high bed shear stresses. The dimensionless radius of curvature in the upstream lobe is one-third less than that of the downstream lobe, with average bank erosion rates less than half of the erosion rates for the downstream lobe. Higher bank erosion rates within the downstream lobe correspond to the shift in a core of high velocity and bed shear stresses toward the outer bank as flow moves through the two lobes. These erosion patterns provide a mechanism for continued migration of the downstream lobe in the near future. Bed material size distributions within the bend correspond to spatial patterns of bed shear stress magnitudes, indicating that bed material sorting within the bend is governed by bed shear stress. Results suggest that patterns of flow, sediment entrainment, and planform evolution in compound meander bends are more complex than in simple meander bends. Moreover, interactions among local influences on the flow, such as woody debris, local topographic steering, and locally high curvature, tend to cause compound bends to evolve toward increasing planform complexity over time rather than stable configurations.

Web-Based Question Bank in Indian Higher Education: An Open Educational Resource

ERIC Educational Resources Information Center

Parthasarathy, M.; Ananthasayanam, R.

2012-01-01

Question bank provides an opportunity to improve the evaluation, learning and answering skills among the students, questioning logics among the teachers, and examination patterns among curriculum designers. The question bank is not a learning material but supports as self-evaluation guide. In India, almost 259 State universities administer…

Donor cornea tissue in cases of drowning or water submersion: eye banks practice patterns and tissue outcomes.

PubMed

Vijayakumar, Nithya P; Parikh, Purak; Mian, Shahzad I; Tennant, Brad; Grossman, Gregory H; Albrecht, Bob; Niziol, Leslie M; Woodward, Maria A

2018-03-01

Surgical use of donor corneal tissue from victims of water submersion (drowning or submersion secondary to death) remains controversial due to limited evidence about the quality of these tissues. To assess the safety of donor corneal tissue from victims of water submersion, an investigation of eye banks' practice patterns and tissue outcomes was conducted. All 79 Eye Bank Association of America accredited eye banks were contacted for a phone interview of practices regarding tissue from victims of water submersion. A retrospective review of corneal tissues from 2014 to 2016 from a large eye bank network was performed to identify all donors submerged in water. Corneal epithelial integrity, endothelial cell density (ECD), rim cultures, and adverse events were analyzed for associations with water submersion characteristics. 49 eye banks (62% response) participated in the survey. 55% of these eye banks had specific, written protocol for tissue eligibility from donors submerged in water. With or without specific protocol, eye banks reported considering water type (84%) and length of time submerged (92%) to determine eligibility. 22% of eye banks reported medical director involvement when eligibility determination was unclear. 79 tissues from 40 donors who were submerged were identified in 2014-2016 eye bank data. No donor tissues had pre-processing corneal infiltrates, positive rim cultures, or adverse events post-keratoplasty. Corneal epithelial integrity and ECD were not associated with water type or length of time submerged. In conclusion, data from a large eye bank network showed no adverse events or outcomes, indicating these tissues may be safe.

Radionuclides in resident and migratory fishes of a wedge bank region: Estimation of dose to human beings, South India.

PubMed

Khan, M Feroz; Wesley, S Godwin

2012-10-01

Baseline activity concentration of (137)Cs, (210)Po and (210)Pb was determined for 25 resident and 22 migratory fish species collected in a so-called wedge bank region in the extreme south of India. A nuclear power station is now under construction at Kudankulam near the target region and the data provide background information on the radionuclide activity concentration in the region. Three-way ANOVA revealed no significant variation in the concentrations of (137)Cs, (210)Po and (210)Pb between species based on feeding habit, habitat and migratory pattern except the effect of feeding habit on (210)Po concentration (p<0.05). The annual dose due to radionuclide ingestion through the fishes was calculated based on the survey results of fish consumption rates for the local population. The dose due to (137)Cs was negligibly small while those due to (210)Po and (210)Pb varied from 1.2 to 36.9 and 0.2 to 2.9μSv yr(-1), respectively. Copyright © 2012 Elsevier Ltd. All rights reserved.

Landscape pattern of seed banks and anthropogenic impacts in forested wetlands of the northern Mississippi River Alluvial Valley

USGS Publications Warehouse

Middleton, B.; Wu, X.B.

2008-01-01

Agricultural development on floodplains contributes to hydrologic alteration and forest fragmentation, which may alter landscape-level processes. These changes may be related to shifts in the seed bank composition of floodplain wetlands. We examined the patterns of seed bank composition across a floodplain watershed by looking at the number of seeds germinating per m2 by species in 60 farmed and intact forested wetlands along the Cache River watershed in Illinois. The seed bank composition was compared above and below a water diversion (position), which artificially subdivides the watershed. Position of these wetlands represented the most variability of Axis I in a Nonmetric Multidimensional Scaling (NMS) analysis of site environmental variables and their relationship to seed bank composition (coefficient of determination for Axis 1: r2 = 0.376; Pearson correlation of position to Axis 1: r = 0.223). The 3 primary axes were also represented by other site environmental variables, including farming status (farmed or unfarmed), distance from the mouth of the river, latitude, and longitude. Spatial analysis based on Mantel correlograms showed that both water-dispersed and wind/water-dispersed seed assemblages had strong spatial structure in the upper Cache (above the water diversion), bur the spatial structure of water-dispersed seed assemblage was diminished in the lower Cache (below the water diversion), which lost floodpulsing. Bearing analysis also Suggested that water-dispersal process had a stronger influence on the overall spatial pattern of seed assemblage in the upper Cache, while wind/water-dispersal process had a stronger influence in the lower Cache. An analysis of the landscapes along the river showed that the mid-lower Cache (below the water diversion) had undergone greater land cover changes associated with agriculture than did the upper Cache watershed. Thus, the combination of forest fragmentation and hydrologic changes in the surrounding landscape may have had an influence on the seed bank composition and spatial distribution of the seed banks of the Cache River watershed. Our study suggests that the spatial pattern of seed bank composition may be influenced by landscape-level factors and processes.

Interdecadal heterogeneity in mitochondrial DNA of Atlantic haddock (Melanogrammus aeglefinus) from Georges Bank.

PubMed

Purcell, M K; Kornfield, I; Fogarty, M; Parker, A

1996-09-01

Atlantic haddock of Georges Bank are characterized by large fluctuations in population size and a recent collapse of the commercial fishery. DNA extracted from dried scales of Georges Bank haddock, archived by the U.S. National Marine Fisheries Service (NMFS), reveals significant heterogeneity in frequencies of four mitochondrial DNA control region haplotypes between 1975 and 1985 cohorts. Several processes may be responsible for this temporal variation, the most attractive hypothesis being that haddock from other geographic regions episodically contribute to the Georges Bank gene pool. Thus, the population of haddock spawning on Georges Bank may not be genetically discrete and, with respect to Atlantic haddock, Georges Bank may not be viewed as a closed system.

A numerical study of circulation driven by mixing over a submarine bank

NASA Astrophysics Data System (ADS)

Cummins, Patrick F.; Foreman, Michael G. G.

1998-04-01

A primitive equation model is applied to study the spin-up of a linearly stratified, rotating fluid over an isolated topographic bank. The model has vertical eddy mixing coefficients that decay away from the bottom over a specified e-folding scale. No external flows are imposed, and a circulation develops due solely to diffusion over the sea bed. Vertical mixing, coupled with the condition of zero diffusive flux of heat through the sea floor, leads to a distortion of isothermal surfaces near the bottom. The associated radial pressure gradients drive a radial-overturning circulation with upslope flow just above the bottom and downslope flows at greater height. Coriolis forces on the radial flows accelerate a verticallysheared azimuthal (alongslope) circulation. Near the bottom the azimuthal motion is cyclonic (upwelling favourable), while outside the boundary layer, the motion is anticyclonic. Sensitivity experiments show that this pattern is robust and maintained even with constant mixing coefficients. Attention is given to the driving mechanism for the depth-averaged azimuthal motion. An analysis of the relative angular momentum balance determines that the torque associated with bottom stresses drives the anticyclonic depth-averaged flow. In terms of vorticity, the anticyclonic vortex over the bank arises due to the curl of bottom stress divided by the depth. A parameter sensitivity study indicates that the depth-averaged flow is relatively insensitive to variations in the bottom drag coefficient.

New Challenges for Data Managment in Genebanks

USDA-ARS?s Scientific Manuscript database

The use of genetic resources for crop improvement has undergone a fundamental shift. Continued progress will be dependent upon the natural variation contained within the world’s gene banks. Gene banks must manage their collections in ways that promote their utilization by increasing access to not ...

Riparian soil seed banks and the potential for passive restoration of giant reed infested areas in Webb County, Texas

USDA-ARS?s Scientific Manuscript database

Habitat restoration projects can use seed bank information as early warning systems of patterns or degrees of habitat degradation; as changes in above ground vegetation directly impact below ground seed distribution. In multiple strategy restoration efforts, seed bank quality can be used as a decidi...

Soil plutonium and cesium in stream channels and banks of Los Alamos liquid effluent-receiving areas.

PubMed

Nyhan, J W; White, G C; Trujillo, G

1982-10-01

Stream channel sediments and adjacent bank soils found in three intermittent streams used for treated liquid effluent disposal at Los Alamos, New Mexico were sampled to determine the distribution of 238Pu, 239,240Pu and 137Cs. Radionuclide concentrations and inventories were determined as functions of distance downstream from the waste outfall and from the center of the stream channel, soil sampling depth, stream channel-bank physiography, and the waste use history of each disposal area. Radionuclide concentrations in channel sediments were inversely related to distances up to 10 km downstream from the outfalls. For sites receiving appreciable waste effluent additions, contaminant concentrations in bank soils decreased with perpendicular distances greater than 0.38 m from the stream channel, and with stream bank sampling depths greater than 20-40 cm. Concentrations and total inventories of radionuclides in stream bank soils generally decreased as stream bank height increased. Inventory estimates of radionuclides in channel sediments exhibited coefficients of variation that ranged 0.41-2.6, reflecting the large variation in radionuclide concentrations at each site. Several interesting temporal relationships of these radionuclides in intermittent streams were gleaned from the varying waste use histories of the three effluent-receiving areas. Eleven yr after liquid wastes were added to one canyon, the major radionuclide inventories were found in the stream bank soils, unlike most of the other currently-used receiving areas. A period of time greater than 6 yr seems to be required before the plutonium in liquid wastes currently added to the canyon is approximately equilibrated with the plutonium in the bank soils. These observations are discussed relative to waste management practices in these southwestern intermittent streams.

Determining Sediment Sources in the Anacostia River Watershed

NASA Astrophysics Data System (ADS)

Devereux, O. H.; Needelman, B. A.; Prestegaard, K. L.; Gellis, A. C.; Ritchie, J. C.

2005-12-01

Suspended sediment is a water-quality problem in the Chesapeake Bay. This project is designed to identify sediment sources in an urban watershed, the Northeast Branch of the Anacostia River (in Washington, D.C. and Maryland - drainage area = 188.5 km2), which delivers sediment directly to the Bay. This watershed spans two physiographic regions - the Piedmont and Coastal Plain. Bank sediment and suspended-sediment deposits were characterized using the following techniques: radionuclide (Cs-137) analysis by gamma ray spectrometry, trace-element analysis by ICP-MS, clay mineralogy by XRD, and particle-size analysis by use of a laser particle-size analyzer. Sampling of bank and suspended sediment was designed to: a) characterize tributary inputs from both Piedmont and Coastal Plain sources, and b) differentiate tributary inputs from bank erosion along the main stem of the Northeast Branch. Thirteen sample sites were chosen that represent tributary source areas of each physiographic region and the main stem where mixing occurs. Surface samples of the banks were compared to overbank deposits from a ten year storm (a proxy for the suspended sediments). Fingerprint components are selected from these data. Cesium-137 concentrations were analyzed for bank and overbank deposits for each physiographic region. No clear differences were seen between the two physiographic regions. Significant differences were observed between upland tributaries and the main stem of the Anacostia River. The average activity of Cs-137 for the tributaries was 5.4 bq/kg and the average for the main stem was 1.1 bq/kg. This suggests that there is significant erosion and storage of sediment in the tributaries. The low activity from Cs-137 in the main stem suggests a lack of storage of sediment along the main stem of the river. For the trace-element data, we focused on elements that showed significant variation among the sites. For the bank sediment, these elements include: Sr, V, Y, Ce, and Nd. For the overbank deposits, Zr, V, Ba, Ce, and Cu showed significant variability. In both physiographic regions, Pb is primarily found in bank deposits, while Cu is found in higher concentrations in overbank deposits. The Cs-137 data clearly showed the erosion and storage of sediment patterns in the watershed. The trace-element data indicate that stream banks may be differentiated from overbank deposits.

Digital shaded relief image of a carbonate platform (northern Great Bahama Bank): Scenery seen and unseen

NASA Astrophysics Data System (ADS)

Boss, Stephen K.

1996-11-01

A mosaic image of the northern Great Bahama Bank was created from separate gray-scale Landsat images using photo-editing and image analysis software that is commercially available for desktop computers. Measurements of pixel gray levels (relative scale from 0 to 255 referred to as digital number, DN) on the mosaic image were compared to bank-top bathymetry (determined from a network of single-channel, high-resolution seismic profiles), bottom type (coarse sand, sandy mud, barren rock, or reef determined from seismic profiles and diver observations), and vegetative cover (presence and/or absence and relative density of the marine angiosperm Thalassia testudinum determined from diver observations). Results of these analyses indicate that bank-top bathymetry is a primary control on observed pixel DN, bottom type is a secondary control on pixel DN, and vegetative cover is a tertiary influence on pixel DN. Consequently, processing of the gray-scale Landsat mosaic with a directional gradient edge-detection filter generated a physiographic shaded relief image resembling bank-top bathymetric patterns related to submerged physiographic features across the platform. The visibility of submerged karst landforms, Pleistocene eolianite ridges, islands, and possible paleo-drainage patterns created during sea-level lowstands is significantly enhanced on processed images relative to the original mosaic. Bank-margin ooid shoals, platform interior sand bodies, reef edifices, and bidirectional sand waves are features resulting from Holocene carbonate deposition that are also more clearly visible on the new physiographic images. Combined with observational data (single-channel, high-resolution seismic profiles, bottom observations by SCUBA divers, sediment and rock cores) across the northern Great Bahama Bank, these physiographic images facilitate comprehension of areal relations among antecedent platform topography, physical processes, and ensuing depositional patterns during sea-level rise.

Configuring calendar variation based on time series regression method for forecasting of monthly currency inflow and outflow in Central Java

NASA Astrophysics Data System (ADS)

Setiawan, Suhartono, Ahmad, Imam Safawi; Rahmawati, Noorgam Ika

2015-12-01

Bank Indonesia (BI) as the central bank of Republic Indonesiahas a single overarching objective to establish and maintain rupiah stability. This objective could be achieved by monitoring traffic of inflow and outflow money currency. Inflow and outflow are related to stock and distribution of money currency around Indonesia territory. It will effect of economic activities. Economic activities of Indonesia,as one of Moslem country, absolutely related to Islamic Calendar (lunar calendar), that different with Gregorian calendar. This research aims to forecast the inflow and outflow money currency of Representative Office (RO) of BI Semarang Central Java region. The results of the analysis shows that the characteristics of inflow and outflow money currency influenced by the effects of the calendar variations, that is the day of Eid al-Fitr (moslem holyday) as well as seasonal patterns. In addition, the period of a certain week during Eid al-Fitr also affect the increase of inflow and outflow money currency. The best model based on the value of the smallestRoot Mean Square Error (RMSE) for inflow data is ARIMA model. While the best model for predicting the outflow data in RO of BI Semarang is ARIMAX model or Time Series Regression, because both of them have the same model. The results forecast in a period of 2015 shows an increase of inflow money currency happened in August, while the increase in outflow money currency happened in July.

The role of bank collapse on tidal creek ontogeny: A novel process-based model for bank retreat

NASA Astrophysics Data System (ADS)

Gong, Zheng; Zhao, Kun; Zhang, Changkuan; Dai, Weiqi; Coco, Giovanni; Zhou, Zeng

2018-06-01

Bank retreat in coastal tidal flats plays a primary role on the planimetric shape of tidal creeks and is commonly driven by both flow-induced bank erosion and gravity-induced bank collapse. However, existing modelling studies largely focus on bank erosion and overlook bank collapse. We build a bank retreat model coupling hydrodynamics, bank erosion and bank collapse. To simulate the process of bank collapse, a stress-deformation model is utilized to calculate the stress variation of bank soil after bank erosion, and the Mohr-Coulomb failure criterion is then applied to evaluate the stability of the tidal creek bank. Results show that the bank failure process can be categorized into three stages, i.e., shear failure at the bank toe (stage I), tensile failure on the bank top (stage II), and sectional cracking from the bank top to the toe (stage III). With only bank erosion, the planimetric shapes of tidal creeks are funneled due to the gradually seaward increasing discharge. In contrast to bank erosion, bank collapse is discontinuous, and the contribution of bank collapse to bank retreat can reach 85%, highlighting that the expansion of tidal creeks can be dominated by bank collapse process. The planimetric shapes of tidal creeks are funneled with a much faster expansion rate when bank collapse is considered. Overall, this study makes a further step toward more physical and realistic simulation of bank retreat in estuarine and coastal settings and the developed bank collapse module can be readily included in other morphodynamic models.

Migration Background Influences Consumption Patterns Based on Dietary Recommendations of Food Bank Users in Germany.

PubMed

Stroebele-Benschop, Nanette; Depa, Julia; Gyngell, Fiona; Müller, Annalena; Eleraky, Laila; Hilzendegen, Carolin

2018-03-29

People with low income tend to eat less balanced than people with higher income. This seems to be particularly the case for people with migration background. This cross-sectional study examined the relation of consumption patterns of 597 food bank users with different migration background in Germany. Questionnaires were distributed assessing sociodemographic information and consumption patterns. Analyses were conducted using binary logistic regressions. Models were controlled for age, gender, type of household and education. The group of German food bank users consumed fewer fruits and vegetables and less fish compared to all other groups with migration background (former USSR, Balkan region, Middle East). A significant predictor for fruit and vegetable consumption was migration status. Participants from the former USSR consumed less often SSBs compared to the other groups. Dietary recommendations for low income populations should take into consideration other aspects besides income such as migration status.

Capital market based warning indicators of bank runs

NASA Astrophysics Data System (ADS)

Vakhtina, Elena; Wosnitza, Jan Henrik

2015-01-01

In this investigation, we examine the univariate as well as the multivariate capabilities of the log-periodic [super-exponential] power law (LPPL) for the prediction of bank runs. The research is built upon daily CDS spreads of 40 international banks for the period from June 2007 to March 2010, i.e. at the heart of the global financial crisis. For this time period, 20 of the financial institutions received federal bailouts and are labeled as defaults while the remaining institutions are categorized as non-defaults. The employed multivariate pattern recognition approach represents a modification of the CORA3 algorithm. The approach is found to be robust regardless of reasonable changes of its inputs. Despite the fact that distinct alarm indices for banks do not clearly demonstrate predictive capabilities of the LPPL, the synchronized alarm indices confirm the multivariate discriminative power of LPPL patterns in CDS spread developments acknowledged by bootstrap intervals with 70% confidence level.

Design and Construction of an Experimental Filament Winding Machine

DTIC Science & Technology

1993-05-01

Mandrel to Heat Shield 102 H.3 Nusselt Geometric Analysis to Determine View Factor 104 H.4 Lamp Bank over Elemental Mandrel Area 105 J. 1 Mandrel inside...emissivity of the lamp bank Tj temperature of individual lamp in the lamp bank w, convective heat transfer coefficient N. Nusselt number Ro Reynolds...mandrel. The design intention was to allow cylinders to be formed by helical or hoop winding, or any variation in between. The type of winding is

Soil Parameter Mapping and Ad Hoc Power Analysis to Increase Blocking Efficiency Prior to Establishing a Long-Term Field Experiment.

PubMed

Collins, Doug; Benedict, Chris; Bary, Andy; Cogger, Craig

2015-01-01

The spatial heterogeneity of soil and weed populations poses a challenge to researchers. Unlike aboveground variability, below-ground variability is more difficult to discern without a strategic soil sampling pattern. While blocking is commonly used to control environmental variation, this strategy is rarely informed by data about current soil conditions. Fifty georeferenced sites were located in a 0.65 ha area prior to establishing a long-term field experiment. Soil organic matter (OM) and weed seed bank populations were analyzed at each site and the spatial structure was modeled with semivariograms and interpolated with kriging to map the surface. These maps were used to formulate three strategic blocking patterns and the efficiency of each pattern was compared to a completely randomized design and a west to east model not informed by soil variability. Compared to OM, weeds were more variable across the landscape and had a shorter range of autocorrelation, and models to increase blocking efficiency resulted in less increase in power. Weeds and OM were not correlated, so no model examined improved power equally for both parameters. Compared to the west to east blocking pattern, the final blocking pattern chosen resulted in a 7-fold increase in power for OM and a 36% increase in power for weeds.

Seasonal variation of water quality in a lateral hyporheic zone with response to dam operations

NASA Astrophysics Data System (ADS)

Chen, X.; Chen, L.; Zhao, J.

2015-12-01

Aquatic environment of lateral hyporheic zone in a regulated river were investigated seasonally under fluctuated water levels induced by dam operations. Groundwater levels variations in preassembled wells and changes in electronic conductivity (EC), dissolved oxygen (DO) concentration, water temperature and pH in the hyporheic zone were examined as environmental performance indicators for the water quality. Groundwater tables in wells were highly related to the river water levels that showed a hysteresis pattern, and the lag time is associated with the distances from wells to the river bank. The distribution of DO and EC were strongly related to the water temperature, indicating that the cold water released from up-reservoir could determine the biochemistry process in the hyporheic zone. Results also showed that the hyporheic water was weakly alkaline in the study area but had a more or less uniform spatial distribution. Dam release-storage cycles were the dominant factor in changing lateral hyporheic flow and water quality.

A comprehensive review of the prevalence of beta globin gene variations and the co-inheritance of related gene variants in Saudi Arabians with beta-thalassemia

PubMed Central

Alaithan, Mousa A.; AbdulAzeez, Sayed; Borgio, J. Francis

2018-01-01

Beta-thalassemia is a genetic disorder that is caused by variations in the beta-hemoglobin (HBB) gene. Saudi Arabia is among the countries most affected by beta-thalassemia, and this is particularly problematic in the Eastern regions. This review article is an attempt to compile all the reported mutations to facilitate further national-level studies to prepare a Saudi repository of HBB gene variations. In Saudi Arabians, IVSI-5 (G>C) and Cd 39 (C>T) are the most prevalent HBB gene variations out of 42 variations. The coinheritance of HBB gene variations with ATRX, HBA1, HBA2, HBA12, AHSP, and KLF1 gene variations were observed to be common in the Saudi population. National surveys on the molecular nature of hemoglobinopathies should be set up through collaborations between research centers from various regions to create a well-documented molecular data bank. This data bank can be used to develop a premarital screening program and lead to the best treatment and prevention strategies for beta-thalassemia. PMID:29619482

Influence of Benthic Macrofauna as a Spatial Structuring Agent for Juvenile Haddock (Melanogrammus aeglefinus) on the Eastern Scotian Shelf, Atlantic Canada.

PubMed

Rincón, Beatriz; Kenchington, Ellen L

2016-01-01

We examined the habitat of juvenile haddock on the eastern Scotian Shelf (off Nova Scotia, Canada) in relation to grab-sampled benthic macrofaunal invertebrate species assemblages in order to determine whether there were significant differences in benthic macrofauna between areas of historically persistent high and low juvenile haddock abundance. Our analyses were conducted over two spatial scales in each of two years: among banks (Emerald, Western and Sable Island), approximately 60 km distant from each other, and between areas of high and low juvenile haddock abundance at distances of 10 to 30 km-all in an area that had not experienced groundfishing in the decade prior to sampling. We also examined fine-scale (10s of metres) within-site variability in the macrofauna and used surficial sediment characteristics, along with hydrographic variables, to identify environmental correlates. PERMANOVA identified statistically significant differences in biomass, density and composition of the benthos associated with juvenile haddock abundance; however it was difficult to determine whether the results had biological relevance. Post hoc tests showed that these differences occurred only on Sable Island Bank where both fish and benthos may have been independently responding to sediment type which was most different there (100% sand in the area of low haddock abundance vs. 22% gravel in the area of high haddock abundance). In total, 383 benthic taxa representing 13 phyla were identified. Annelida was the most specious phylum (36.29% of taxa, representing 33 families), followed by Arthropoda (with Crustaceans, mostly Amphipoda, accounting for 25.07% of the total number of taxa). The strongest pattern in the macrofauna was expressed at the largest scale, between banks, accounting for approximately 25% of the variation in the data. Emerald Bank, deeper, warmer and saltier than the Western and Sable Island Banks, had a distinctive fauna.

Influence of Benthic Macrofauna as a Spatial Structuring Agent for Juvenile Haddock (Melanogrammus aeglefinus) on the Eastern Scotian Shelf, Atlantic Canada

PubMed Central

2016-01-01

We examined the habitat of juvenile haddock on the eastern Scotian Shelf (off Nova Scotia, Canada) in relation to grab-sampled benthic macrofaunal invertebrate species assemblages in order to determine whether there were significant differences in benthic macrofauna between areas of historically persistent high and low juvenile haddock abundance. Our analyses were conducted over two spatial scales in each of two years: among banks (Emerald, Western and Sable Island), approximately 60 km distant from each other, and between areas of high and low juvenile haddock abundance at distances of 10 to 30 km–all in an area that had not experienced groundfishing in the decade prior to sampling. We also examined fine-scale (10s of metres) within-site variability in the macrofauna and used surficial sediment characteristics, along with hydrographic variables, to identify environmental correlates. PERMANOVA identified statistically significant differences in biomass, density and composition of the benthos associated with juvenile haddock abundance; however it was difficult to determine whether the results had biological relevance. Post hoc tests showed that these differences occurred only on Sable Island Bank where both fish and benthos may have been independently responding to sediment type which was most different there (100% sand in the area of low haddock abundance vs. 22% gravel in the area of high haddock abundance). In total, 383 benthic taxa representing 13 phyla were identified. Annelida was the most specious phylum (36.29% of taxa, representing 33 families), followed by Arthropoda (with Crustaceans, mostly Amphipoda, accounting for 25.07% of the total number of taxa). The strongest pattern in the macrofauna was expressed at the largest scale, between banks, accounting for approximately 25% of the variation in the data. Emerald Bank, deeper, warmer and saltier than the Western and Sable Island Banks, had a distinctive fauna. PMID:27649419

Differing source water inputs, moderated by evaporative enrichment, determine the contrasting δ18OCELLULOSE signals in maritime Antarctic moss peat banks

NASA Astrophysics Data System (ADS)

Royles, Jessica; Sime, Louise C.; Hodgson, Dominic A.; Convey, Peter; Griffiths, Howard

2013-03-01

Oxygen isotope palaeoclimate records, preserved in moss tissue cellulose, are complicated by environmental influences on the relationships between source water inputs and evaporative conditions. We carried out stable isotope analyses of precipitation collected from the maritime Antarctic and cellulose extracted from co-located Chorisodontium aciphyllum dominated moss peat bank deposits accumulated since 1870 A.D. Analyses of stable oxygen and hydrogen isotope composition of summer precipitation on Signy Island (60.7°S, 45.6°W) established a local meteoric water line (LMWL) similar to both the global MWL and other LMWLs, and almost identical to the HadAM3 isotope-enabled global circulation model output. The oxygen isotopic composition of cellulose (δ18OC) revealed little temporal variation between four moss peat banks on Signy Island since 1870. However, δ18OC followed two patterns with Sites A and D consistently 3‰ enriched relative to δ18OC values from Sites B and C. The growing moss surfaces at Sites A and D are likely to have been hydrated by isotopically heavier summer precipitation, whilst at Sites B and C, the moss banks are regularly saturated by the isotopically depleted snow melt streams. Laboratory experiments revealed that evaporative enrichment of C. aciphyllum moss leaf water by 5‰ occurred rapidly following saturation (ecologically equivalent to post-rainfall or snow melt periods). In addition to the recognized source water-cellulose fractionation extent of 27 ± 3‰, such a shift would account for the 32‰ difference measured between δ18O of Signy Island precipitation and cellulose.

Soil propagule banks of ectomycorrhizal fungi share many common species along an elevation gradient.

PubMed

Miyamoto, Yumiko; Nara, Kazuhide

2016-04-01

We conducted bioassay experiments to investigate the soil propagule banks of ectomycorrhizal (EM) fungi in old-growth forests along an elevation gradient and compared the elevation pattern with the composition of EM fungi on existing roots in the field. In total, 150 soil cores were collected from three forests on Mt. Ishizuchi, western Japan, and subjected to bioassays using Pinus densiflora and Betula maximowicziana. Using molecular analyses, we recorded 23 EM fungal species in the assayed propagule banks. Eight species (34.8 %) were shared across the three sites, which ranged from a warm-temperate evergreen mixed forest to a subalpine conifer forest. The elevation pattern of the assayed propagule banks differed dramatically from that of EM fungi on existing roots along the same gradient, where only a small proportion of EM fungal species (3.5 %) were shared across sites. The EM fungal species found in the assayed propagule banks included many pioneer fungal species and composition differed significantly from that on existing roots. Furthermore, only 4 of 23 species were shared between the two host species, indicating a strong effect of bioassay host identity in determining the propagule banks of EM fungi. These results imply that the assayed propagule bank is less affected by climate compared to EM fungal communities on existing roots. The dominance of disturbance-dependent fungal species in the assayed propagule banks may result in higher ecosystem resilience to disturbance even in old-growth temperate forests.

Topographic Signatures of Meandering Rivers with Differences in Outer Bank Cohesion

NASA Astrophysics Data System (ADS)

Kelly, S. A.; Belmont, P.

2014-12-01

Within a given valley setting, interactions between river hydraulics, sediment, topography, and vegetation determine attributes of channel morphology, including planform, width and depth, slope, and bed and bank properties. These feedbacks also govern river behavior, including migration and avulsion. Bank cohesion, from the addition of fine sediment and/or vegetation has been recognized in flume experiments as a necessary component to create and maintain a meandering channel planform. Greater bank cohesion slows bank erosion, limiting the rate at which a river can adjust laterally and preventing so-called "runaway widening" to a braided state. Feedbacks of bank cohesion on channel hydraulics and sediment transport may thus produce distinct topographic signatures, or patterns in channel width, depth, and point bar transverse slope. We expect that in bends of greater outer bank cohesion the channel will be narrower, deeper, and bars will have greater transverse slopes. Only recently have we recognized that biotic processes may imprint distinct topographic signatures on the landscape. This study explores topographic signatures of three US rivers: the lower Minnesota River, near Mankato, MN, the Le Sueur River, south central MN, and the Fall River, Rocky Mountain National Park, CO. Each of these rivers has variability in outer bank cohesion, quantified based on geotechnical and vegetation properties, and in-channel topography, which was derived from rtkGPS and acoustic bathymetry surveys. We present methods for incorporating biophysical feedbacks into geomorphic transport laws so that models can better simulate the spatial patterns and variability of topographic signatures.

Sensitivity of a Riparian Large Woody Debris Recruitment Model to the Number of Contributing Banks and Tree Fall Pattern

Treesearch

Don C. Bragg; Jeffrey L. Kershner

2004-01-01

Riparian large woody debris (LWD) recruitment simulations have traditionally applied a random angle of tree fall from two well-forested stream banks. We used a riparian LWD recruitment model (CWD, version 1.4) to test the validity these assumptions. Both the number of contributing forest banks and predominant tree fall direction significantly influenced simulated...

An evaluation of the feedback loops in the poverty focus of world bank operations.

PubMed

Fardoust, Shahrokh; Kanbur, Ravi; Luo, Xubei; Sundberg, Mark

2018-04-01

The World Bank Group in 2013 made the elimination of extreme poverty by 2030 a central institutional focus and purpose. This paper, based on an evaluation conducted by the Independent Evaluation Group of the World Bank Group, examines how, and how well, the Bank uses feedback loops to enhance the poverty focus of its operations. Feedback loops are important for every element of the results chain running from data, to diagnostics, to strategy formulation and finally to strategy implementation. The evaluation uses a range of instruments, including surveys of stakeholders and World Bank staff, focus group meetings, country case studies and systematic reviews of Bank lending and non-lending operations. We find that while the Bank generates useful information on poverty reduction from its projects and programs, the feedback loops - from outcomes to data analysis to diagnostics to strategy formulation and implementation - have generally been weak, with sizable variation across countries. Copyright © 2017 The World Bank. Published by Elsevier Ltd.. All rights reserved.

Spatial variation in seed bank dynamics of two annual brome species in the northern Great Plains

USDA-ARS?s Scientific Manuscript database

Annual bromes decrease forage production in northern central plains rangelands of North America. Early life history stages are when plants are most failure-prone, yet studying death post-germination and prior to emergence is difficult. In seed bank collections conducted over the course of two growin...

Improved numerical modelling of morphodynamics of rivers with steep banks

USDA-ARS?s Scientific Manuscript database

The flow and sediment transport processes near steep streambanks, which are commonly found in meandering, braided, and anastomosing stream systems, exhibit complex patterns. The interactions between bed and bank morphologic adjustment, and their governing processes are still not well understood. Inc...

An evaluation of computerized adaptive testing for general psychological distress: combining GHQ-12 and Affectometer-2 in an item bank for public mental health research.

PubMed

Stochl, Jan; Böhnke, Jan R; Pickett, Kate E; Croudace, Tim J

2016-05-20

Recent developments in psychometric modeling and technology allow pooling well-validated items from existing instruments into larger item banks and their deployment through methods of computerized adaptive testing (CAT). Use of item response theory-based bifactor methods and integrative data analysis overcomes barriers in cross-instrument comparison. This paper presents the joint calibration of an item bank for researchers keen to investigate population variations in general psychological distress (GPD). Multidimensional item response theory was used on existing health survey data from the Scottish Health Education Population Survey (n = 766) to calibrate an item bank consisting of pooled items from the short common mental disorder screen (GHQ-12) and the Affectometer-2 (a measure of "general happiness"). Computer simulation was used to evaluate usefulness and efficacy of its adaptive administration. A bifactor model capturing variation across a continuum of population distress (while controlling for artefacts due to item wording) was supported. The numbers of items for different required reliabilities in adaptive administration demonstrated promising efficacy of the proposed item bank. Psychometric modeling of the common dimension captured by more than one instrument offers the potential of adaptive testing for GPD using individually sequenced combinations of existing survey items. The potential for linking other item sets with alternative candidate measures of positive mental health is discussed since an optimal item bank may require even more items than these.

Estimating Travel Time in Bank Filtration Systems from a Numerical Model Based on DTS Measurements.

PubMed

des Tombe, Bas F; Bakker, Mark; Schaars, Frans; van der Made, Kees-Jan

2018-03-01

An approach is presented to determine the seasonal variations in travel time in a bank filtration system using a passive heat tracer test. The temperature in the aquifer varies seasonally because of temperature variations of the infiltrating surface water and at the soil surface. Temperature was measured with distributed temperature sensing along fiber optic cables that were inserted vertically into the aquifer with direct push equipment. The approach was applied to a bank filtration system consisting of a sequence of alternating, elongated recharge basins and rows of recovery wells. A SEAWAT model was developed to simulate coupled flow and heat transport. The model of a two-dimensional vertical cross section is able to simulate the temperature of the water at the well and the measured vertical temperature profiles reasonably well. MODPATH was used to compute flowpaths and the travel time distribution. At the study site, temporal variation of the pumping discharge was the dominant factor influencing the travel time distribution. For an equivalent system with a constant pumping rate, variations in the travel time distribution are caused by variations in the temperature-dependent viscosity. As a result, travel times increase in the winter, when a larger fraction of the water travels through the warmer, lower part of the aquifer, and decrease in the summer, when the upper part of the aquifer is warmer. © 2017 The Authors. Groundwater published by Wiley Periodicals, Inc. on behalf of National Ground Water Association.

Factors affecting the labor efficiency of hospital-based blood bank laboratories.

PubMed

Lam, H C; Kominski, G F; Petz, L D; Sofaer, S

1994-09-01

A variety of financing mechanisms and managerial innovations have been developed in the past decade to control hospital costs. Some evidence suggests that those changes have not produced substantial improvements in labor efficiency among employees in the hospital's technical level, such as in the blood bank laboratories. This study measured labor efficiency in 40 hospital-based blood bank laboratories in Southern California during the year from July 1989 to June 1990 and explored the impact of financial, managerial, and operational factors on labor efficiency. With standardized output measures used in all blood bank laboratories, a wide variation of labor efficiency was found. Multivariate analyses indicate that the labor efficiency of blood bank employees was not influenced by organizational financial incentives, but was affected by the managerial styles of blood bank managers. Interpretation of the findings suggests that labor efficiency is affected by operational designs intended to improve responses to variable workloads and reduce slack time.

Influence of bedrock on river hydrodynamics and channel geometry

NASA Astrophysics Data System (ADS)

Rennie, C. D.; Church, M. A.; Venditti, J. G.; Bomhof, J.; Adderley, C.

2013-12-01

We present an acoustic Doppler current profiler (aDcp) survey of a 524 km long reach of Fraser River, British Columbia, Canada, as it passes through the Fraser Canyons. The channel alternates between gravel-bedded reaches that are incised into semi-consolidated glacial deposits and bedrock-bound reaches (7.7% of the reach between the towns of Quesnel and Hope). A continuous centreline aDcp survey was employed to measure longitudinal variation in slope, depth, depth-averaged velocity, and shear velocity. A total of 71 aDcp sectional surveys throughout the reach provided section widths (w), section-averaged depths (d), velocity distributions, and discharge (Q). Finally, air photo analysis using Google imagery provided channel widths at 0.5 km spacing. The survey reach was subdivided into 10 morphological sub-reaches, which ranged from alluvial gravel-bed reaches with relatively moderate slope to steep non-alluvial rock-walled canyons. The resulting data provide a unique opportunity to evaluate the influence of bedrock confinement on river hydrodynamics and channel geometry. Continuous centreline longitudinal aDcp data and the widths from air photo analysis were grouped within each sub-reach based on presence of bedrock confinement on both banks, either bank, or neither bank. The results demonstrate that river widths decreased and water depths, flow velocities, and shear velocities increased from the alluvial sub-reaches to the semi-alluvial reaches to the canyon reaches. Within each sub-reach, locations with bedrock encroachment on both banks were also narrower and deeper, but had lower depth-averaged velocity and shear velocity. Sectional geometry data were homogenized along the river (to compensate increasing flows at tributary junctions) by computing w/Q^{1/2} and d/Q^{1/3}, following commonly observed scaling relations. Alluvial reaches are 2.3x wider than rock-bound reaches (from the more abundant imagery data) and 0.60x as deep (from aDcp sections), implying that mean velocity is accelerated in rock reaches by 38%. There is also variation from reach to reach along the river controlled by variation in rock lithologies, with the narrowest canyons occurring in Fraser Canyon proper (w/Q^{1/2} = 0.083 compared with 1.4 elsewhere). The uppermost (';Marguerite') and lowermost (';Agassiz') alluvial reaches are considerably wider (w/Q^{1/2}= 3.9 and 7.1 respectively) than intervening ones ( 2.35). These reaches have lower gradients and exhibit wandering channels. Because of lithological control, the downstream hydraulic geometry of the river does not, in fact, conform with the common pattern, even when sections are analyzed according to boundary material. However, river gradient is well correlated with scaled width; inversely for gravel reaches and directly, but with little sensitivity, for rock-bound reaches.

Variations of streambed vertical hydraulic conductivity before and after a flood season

NASA Astrophysics Data System (ADS)

Wu, Guangdong; Shu, Longcang; Lu, Chengpeng; Chen, Xunhong; Zhang, Xiao; Appiah-Adjei, Emmanuel K.; Zhu, Jingsi

2015-11-01

The change of vertical hydraulic conductivity ( K v) before and after a flood season is crucial in understanding the long-term temporal variation of streambed permeability. Therefore, in this study, a detailed K v field investigation was conducted at an in-channel site within the Dawen River, China, before and after a flood season. In-situ falling-head permeameter tests were performed for the determination of K v. The tests were conducted using a 10 × 10 grid, at five different depths. In total, 871 valid K v values from layers 1-5 were obtained. The Kruskal-Wallis test on these K v values before and after the flood season shows they belonged to different populations. The sediments before the flood season primarily consisted of sand and gravel, whereas after the flood season, patchy distribution of silt/clay occurred in the sandy streambed and silt/clay content increased with the increasing depth; under the losing condition during flooding, downward movement of water brought fine particles into the coarse sediments, partially silting the pores. Accordingly, the K v values after the flood season had a smaller mean and median, and a higher level of heterogeneity, compared to those before the flood season. Additionally, the distribution pattern in K v across the stream differed before and after flood season; after the flood season, there was an increasing trend in K v from the south bank to the north bank. Overall, the contrasts of K v before and after the flood season were predominantly subject to the infiltration of fine particles.

Two-pole microring weight banks.

PubMed

Tait, Alexander N; Wu, Allie X; Ferreira de Lima, Thomas; Nahmias, Mitchell A; Shastri, Bhavin J; Prucnal, Paul R

2018-05-15

Weighted addition is an elemental multi-input to single-output operation that can be implemented with high-performance photonic devices. Microring (MRR) weight banks bring programmable weighted addition to silicon photonics. Prior work showed that their channel limits are affected by coherent inter-channel effects that occur uniquely in weight banks. We fabricate two-pole designs that exploit this inter-channel interference in a way that is robust to dynamic tuning and fabrication variation. Scaling analysis predicts a channel count improvement of 3.4-fold, which is substantially greater than predicted by incoherent analysis used in conventional MRR devices. Advances in weight bank design expand the potential of reconfigurable analog photonic networks and multivariate microwave photonics.

Differential Gene Expression in Normal Human Mammary Epithelial Cells Treated with Malathion Monitored by DNA Microarrays

PubMed Central

Gwinn, Maureen R.; Whipkey, Diana L.; Tennant, Lora B.; Weston, Ainsley

2005-01-01

Organophosphate pesticides are a major source of occupational exposure in the United States. Moreover, malathion has been sprayed over major urban populations in an effort to control mosquitoes carrying West Nile virus. Previous research, reviewed by the U.S. Environmental Protection Agency, on the genotoxicity and carcinogenicity of malathion has been inconclusive, although malathion is a known endocrine disruptor. Here, interindividual variations and commonality of gene expression signatures have been studied in normal human mammary epithelial cells from four women undergoing reduction mammoplasty. The cell strains were obtained from the discarded tissues through the Cooperative Human Tissue Network (sponsors: National Cancer Institute and National Disease Research Interchange). Interindividual variation of gene expression patterns in response to malathion was observed in various clustering patterns for the four cell strains. Further clustering identified three genes with increased expression after treatment in all four cell strains. These genes were two aldo–keto reductases (AKR1C1 and AKR1C2) and an estrogen-responsive gene (EBBP). Decreased expression of six RNA species was seen at various time points in all cell strains analyzed: plasminogen activator (PLAT), centromere protein F (CPF), replication factor C (RFC3), thymidylate synthetase (TYMS), a putative mitotic checkpoint kinase (BUB1), and a gene of unknown function (GenBank accession no. AI859865). Expression changes in all these genes, detected by DNA microarrays, have been verified by real-time polymerase chain reaction. Differential changes in expression of these genes may yield biomarkers that provide insight into interindividual variation in malathion toxicity. PMID:16079077

Full genome sequence of Rocio virus reveal substantial variations from the prototype Rocio virus SPH 34675 sequence.

PubMed

Setoh, Yin Xiang; Amarilla, Alberto A; Peng, Nias Y; Slonchak, Andrii; Periasamy, Parthiban; Figueiredo, Luiz T M; Aquino, Victor H; Khromykh, Alexander A

2018-01-01

Rocio virus (ROCV) is an arbovirus belonging to the genus Flavivirus, family Flaviviridae. We present an updated sequence of ROCV strain SPH 34675 (GenBank: AY632542.4), the only available full genome sequence prior to this study. Using next-generation sequencing of the entire genome, we reveal substantial sequence variation from the prototype sequence, with 30 nucleotide differences amounting to 14 amino acid changes, as well as significant changes to predicted 3'UTR RNA structures. Our results present an updated and corrected sequence of a potential emerging human-virulent flavivirus uniquely indigenous to Brazil (GenBank: MF461639).

Changes in Diversification Patterns and Signatures of Selection during the Evolution of Murinae-Associated Hantaviruses

PubMed Central

Castel, Guillaume; Razzauti, Maria; Jousselin, Emmanuelle; Kergoat, Gael J.; Cosson, Jean-François

2014-01-01

In the last 50 years, hantaviruses have significantly affected public health worldwide, but the exact extent of the distribution of hantavirus diseases, species and lineages and the risk of their emergence into new geographic areas are still poorly known. In particular, the determinants of molecular evolution of hantaviruses circulating in different geographical areas or different host species are poorly documented. Yet, this understanding is essential for the establishment of more accurate scenarios of hantavirus emergence under different climatic and environmental constraints. In this study, we focused on Murinae-associated hantaviruses (mainly Seoul Dobrava and Hantaan virus) using sequences available in GenBank and conducted several complementary phylogenetic inferences. We sought for signatures of selection and changes in patterns and rates of diversification in order to characterize hantaviruses’ molecular evolution at different geographical scales (global and local). We then investigated whether these events were localized in particular geographic areas. Our phylogenetic analyses supported the assumption that RNA virus molecular variations were under strong evolutionary constraints and revealed changes in patterns of diversification during the evolutionary history of hantaviruses. These analyses provide new knowledge on the molecular evolution of hantaviruses at different scales of time and space. PMID:24618811

Soil Parameter Mapping and Ad Hoc Power Analysis to Increase Blocking Efficiency Prior to Establishing a Long-Term Field Experiment

PubMed Central

Collins, Doug; Benedict, Chris; Bary, Andy; Cogger, Craig

2015-01-01

The spatial heterogeneity of soil and weed populations poses a challenge to researchers. Unlike aboveground variability, below-ground variability is more difficult to discern without a strategic soil sampling pattern. While blocking is commonly used to control environmental variation, this strategy is rarely informed by data about current soil conditions. Fifty georeferenced sites were located in a 0.65 ha area prior to establishing a long-term field experiment. Soil organic matter (OM) and weed seed bank populations were analyzed at each site and the spatial structure was modeled with semivariograms and interpolated with kriging to map the surface. These maps were used to formulate three strategic blocking patterns and the efficiency of each pattern was compared to a completely randomized design and a west to east model not informed by soil variability. Compared to OM, weeds were more variable across the landscape and had a shorter range of autocorrelation, and models to increase blocking efficiency resulted in less increase in power. Weeds and OM were not correlated, so no model examined improved power equally for both parameters. Compared to the west to east blocking pattern, the final blocking pattern chosen resulted in a 7-fold increase in power for OM and a 36% increase in power for weeds. PMID:26247056

SEASONAL VARIATIONS OF DISSOLVED MERCURY CONCENTRATIONS AT THE SULPHUR BANK MERCURY MINE, CLEAR LAKE, CALIFORNIA: IMPLICATIONS FOR MINE DRAINAGE MONITORING

EPA Science Inventory

The Sulphur Bank Mercury Mine in Lake County, California (SBMM) was operated from the 1860s through the 1950s. Mining for sulfur started with surface operations and then progressed to shaft and later open pit techniques to obtain mercury. SBMM is located adjacent to the shore o...

Measuring and Understanding the Energy Use Signatures of a Bank Building

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xie, YuLong; Liu, Bing; Athalye, Rahul A.

The Pacific Northwest National Laboratory measured and analyzed the energy end-use patterns in a bank building located in the north-eastern United States. This work was performed in collaboration with PNC Financial Service Group under the US DOE’s Commercial Building Partnerships Program. This paper presents the metering study and the results of the metered data analysis. It provides a benchmark for the energy use of different bank-related equipments. The paper also reveals the importance of metering in fully understanding building loads and indentifying opportunities for energy efficiency improvements that will have impacts across PNC’s portfolio of buildings and were crucial tomore » reducing receptacle loads in the design of a net-zero bank branches. PNNL worked with PNC to meter a 4,000 ft2 bank branch in the state of Pennsylvania. 71 electrical circuits were monitored and 25 stand-alone watt-hour meters were installed at the bank. These meters monitored the consumption of all interior and exterior lighting, receptacle loads, service water heating, and the HVAC rooftop unit at a 5-minute sampling interval from November 2009 to November 2010. A total of over 8 million data records were generated, which were then analyzed to produce the end-use patterns, daily usage profiles, rooftop unit usage cycles, and inputs for calibrating the energy model of the building.« less

A Real-Time Interactive System for Facial Makeup of Peking Opera

NASA Astrophysics Data System (ADS)

Cai, Feilong; Yu, Jinhui

In this paper we present a real-time interactive system for making facial makeup of Peking Opera. First, we analyze the process of drawing facial makeup and characteristics of the patterns used in it, and then construct a SVG pattern bank based on local features like eye, nose, mouth, etc. Next, we pick up some SVG patterns from the pattern bank and composed them to make a new facial makeup. We offer a vector-based free form deformation (FFD) tool to edit patterns and, based on editing, our system creates automatically texture maps for a template head model. Finally, the facial makeup is rendered on the 3D head model in real time. Our system offers flexibility in designing and synthesizing various 3D facial makeup. Potential applications of the system include decoration design, digital museum exhibition and education of Peking Opera.

Dynamic Assessment on the Landscape Patterns and Spatio-temporal Change in the mainstream of Tarim River

NASA Astrophysics Data System (ADS)

Zhang, Hui; Xue, Lianqing; Yang, Changbing; Chen, Xinfang; Zhang, Luochen; Wei, Guanghui

2018-01-01

The Tarim River (TR), as the longest inland river at an arid area in China, is a typical regions of vegetation variation research and plays a crucial role in the sustainable development of regional ecological environment. In this paper, the newest dataset of MODND1M NDVI, at a resolution of 500m, were applied to calculate vegetation index in growing season during the period 2000-2015. Using a vegetation coverage index, a trend line analysis, and the local spatial autocorrelation analysis, this paper investigated the landscape patterns and spatio-temporal variation of vegetation coverage at regional and pixel scales over mainstream of the Tarim River, Xinjiang. The results showed that (1) The bare land area on both sides of Tarim River appeared to have a fluctuated downward trend and there were two obvious valley values in 2005 and 2012. (2) Spatially, the vegetation coverage improved areas is mostly distributed in upstream and the degraded areas is mainly distributed in the left bank of midstream and the end of Tarim River during 2000-2005. (3) The local spatial auto-correlation analysis revealed that vegetation coverage was spatially positive autocorrelated and spatial concentrated. The high-high self-related areas are mainly distributed in upstream, where vegetation cover are relatively good, and the low-low self-related areas are mostly with lower vegetation cover in the lower reaches of Tarim River.

Prospective, randomized, blinded evaluation of donor semen quality provided by seven commercial sperm banks.

PubMed

Carrell, Douglas T; Cartmill, Deborah; Jones, Kirtly P; Hatasaka, Harry H; Peterson, C Matthew

2002-07-01

To evaluate variability in donor semen quality between seven commercial donor sperm banks, within sperm banks, and between intracervical insemination and intrauterine insemination. Prospective, randomized, blind evaluation of commercially available donor semen samples. An academic andrology laboratory. Seventy-five cryopreserved donor semen samples were evaluated. Samples were coded, then blindly evaluated for semen quality. Standard semen quality parameters, including concentration, motility parameters, World Health Organization criteria morphology, and strict criteria morphology. Significant differences were observed between donor semen banks for most semen quality parameters analyzed in intracervical insemination samples. In general, the greatest variability observed between banks was in percentage progressive sperm motility (range, 8.8 +/- 5.8 to 42.4 +/- 5.5) and normal sperm morphology (strict criteria; range, 10.1 +/- 3.3 to 26.6 +/- 4.7). Coefficients of variation within sperm banks were generally high. These data demonstrate the variability of donor semen quality provided by commercial sperm banks, both between banks and within a given bank. No relationship was observed between the size or type of sperm bank and the degree of variability. The data demonstrate the lack of uniformity in the criteria used to screen potential semen donors and emphasize the need for more stringent screening criteria and strict quality control in processing samples.

The role of ocean currents for carbonate platform stratigraphy (Invited)

NASA Astrophysics Data System (ADS)

Betzler, C.; Lindhorst, S.; Luedmann, T.; Eberli, G. P.; Reijmer, J.; Huebscher, C. P.

2013-12-01

Breaks and turnovers in carbonate bank growth and development record fluctuations in sea-level and environmental changes. For the carbonate banks of the Bahamas, the Maldives, the Queensland, and the Marion Plateau, sea-level changes and synchronous oceanographic and atmospheric circulation events were recorded through compositional and architectural changes. Most of these major carbonate edifices contain drift deposits, indicating that oceanic currents were a major driver of carbonate-bank evolution. It is proposed that such currents have a larger imprint on the growth patterns and the stratigraphic packaging of carbonates than previously thought. In the Bahamas, slope facies of carbonate banks exposed to deep oceanic currents are not arranged into sediment-texture controlled and depth-dependant strike-continuous facies belts. Facies patterns are controlled by the interplay of shallow-water input, succeeding sediment sorting as well as redistribution and erosion processes. This complements the classical windward - leeward classification of carbonate platform slopes and accounts for the significant and potentially dominant process of alongslope sediment transport and dispersal. Deep oceanic currents also have the potential to steepen the carbonate bank slopes, through sediment winnowing at the distal slope, such as for example in the Maldives. This process can be enhanced as the bank grows and expands in size which may accelerate currents. Oceanic current onset or amplification, however, may also account for slope steepening as an externally, i.e. climate-driven agent, thus forcing the banks into an aggradation mode of growth which is not a response to sea-level fluctuations or a result of the windward / leeward exposure of the bank edge. Ignorance of the impact of currents on platforms and platform slopes may lead to an erroneous conclusion that changes in sediment production, distribution, and morphologies of sediment bodies are features solely related to sea-level changes.

A sliding windows approach to analyse the evolution of bank shares in the European Union

NASA Astrophysics Data System (ADS)

Ferreira, Paulo; Dionísio, Andreia; Guedes, Everaldo Freitas; Zebende, Gilney Figueira

2018-01-01

Both sub-prime and Eurozone debt crisis problems caused severe financial crisis, which affected European markets in general, but particularly the banking sector. The continuous devaluation of bank shares in the financial sector caused a great decrease in market capitalization, and in citizen and investor confidence. Panic among investors led them to sell shares, while other agents took the opportunity to buy them. Therefore, the study of bank shares is important, particularly of their efficiency. In this paper, adopting a sliding windows detrended fluctuation approach, we analyse the efficiency concept dynamically with 63 European banks (both in and outside the Eurozone). The main results show that the crisis had an effect on changing the efficiency pattern.

Ectopic banking of amputated great toe for delayed thumb reconstruction: case report.

PubMed

Valerio, Ian L; Hui-Chou, Helen G; Zelken, Jonathan; Basile, Patrick L; Ipsen, Derek; Higgins, James P

2014-07-01

Ectopic banking of amputated parts is a recognized technique for delayed replantation of an amputated part when the amputation stump will not permit immediate replantation. This is conventionally performed with the intent of transferring the injured part back to its anatomic position when the amputation stump is more appropriate for replantation. Current warfare conditions have led to a commonly encountered military trauma injury pattern of multiple extremity amputations with protected trunk and core structures. This pattern poses many challenges, including the limit or absence of donor sites for immediate or delayed flap reconstructive procedures. We describe a case in which we ectopically banked the great toe of an amputated lower extremity for delayed thumb reconstruction. Copyright © 2014 American Society for Surgery of the Hand. Published by Elsevier Inc. All rights reserved.

Fine-Scale Focal Dtag Behavioral Study of Diel Trends in Activity Budgets and Sound Production of Endangered Baleen Whales in the Gulf of Maine

DTIC Science & Technology

2011-09-30

endangered baleen whale species, the humpback whale (Megaptera novaengliae) and the right whale (Eubalaena glacialis), on the Stellwagen Bank National...in dive profiles and horizontal movement patterns for tagged humpback and right whales on the Stellwagen Bank National Marine Sanctuary; 2...determine the sound production behavior of individual tagged humpback and right whales on the Stellwagen Bank National Marine Sanctuary; and 3) examine the

A review of state legislation on DNA forensic data banking.

PubMed Central

McEwen, J. E.; Reilly, P. R.

1994-01-01

Recent advances in DNA identification technology are making their way into the criminal law. States across the country are enacting legislation to create repositories for the storage both of DNA samples collected from convicted offenders and of the DNA profiles derived from them. These data banks will be used to assist in the resolution of future crimes. This study surveys existing state statues, pending legislation, and administrative regulations that govern these DNA forensic data banks. We critically analyzed these laws with respect to their treatment of the collection, storage, analysis, retrieval, and use of DNA and DNA data. We found much variation among data-banking laws and conclude that, while DNA forensic data banking carries tremendous potential for law enforcement, many states, in their rush to create data banks, have paid little attention to issues of quality control, quality assurance, and privacy. In addition, the sweep of some laws is unnecessarily broad. Legislative modifications are needed in many states to better safeguard civil liberties and individual privacy. PMID:8198138

Location Dynamics of Foreign Banking in Shanghai from 1990 TO 2009

NASA Astrophysics Data System (ADS)

Feng, Xiaobing; Kim, Beom Jun

This study examined the determinants of foreign bank location decisions in Shanghai markets over the period of 1990 to 2009. The growing foreign presence in Shanghai was found to be related to two different policy regimes: Pudong development area foreign enterprise clustering period after China opened Pudong, and "deposit-loan-match principle" implementing period after China joined WTO. The current location pattern was found to be correlated to deposit potential in each district. It is evident that the foreign bank location decisions were influenced by those of domestic banks while the reverse did not hold. These findings provide a valuable platform for theoretical modeling and further analysis.

Mukhabarah as Sharia Financing Model in Beef Cattle Farm Entrepise

NASA Astrophysics Data System (ADS)

Asnawi, A.; Amrawaty, A. A.; Nirwana

2018-02-01

Financing constraints on beef cattle farm nowadays have received attention by the government through distributed various assistance programs and program loans through implementing banks. The existing financing schemes are all still conventional yet sharia-based. The purpose of this research is to formulate financing pattern for sharia beef cattle farm. A qualitative and descriptive approach is used to formulate the pattern by considering the profit-sharing practices of the beef cattle farmers. The results of this study have formulated a financing pattern that integrates government, implementing banks, beef cattle farmers group and cooperative as well as breeders as its members. This pattern of financing is very accommodating of local culture that develops in rural communities. It is expected to be an input, especially in formulating a business financing policy Sharia-based beef cattle breeding.

Influence of Guidelines and Passageways on Tunneling Behavior of Reticulitermes flavipes (Kollar) and R, virginicus (Banks) (Isoptera: Rhinotermitidae)

Treesearch

Theresa L. Pitts-Singer; Brian T. Forschler

2000-01-01

Tunneling behavior of laboratory-maintained cultures of Reticulitermes flavipes (Kollar) and R. virginicus (Banks) was examined to determine (1) if the termites build tunnels along preexisting wires or tunnels, and (2) whether tunnels are arranged, to optimize search efficiency. Tunnel patterns were considered optimal if ,...

Temporal dynamics of Puumala hantavirus infection in cyclic populations of bank voles.

PubMed

Voutilainen, Liina; Kallio, Eva R; Niemimaa, Jukka; Vapalahti, Olli; Henttonen, Heikki

2016-02-18

Understanding the dynamics of zoonotic pathogens in their reservoir host populations is a prerequisite for predicting and preventing human disease epidemics. The human infection risk of Puumala hantavirus (PUUV) is highest in northern Europe, where populations of the rodent host (bank vole, Myodes glareolus) undergo cyclic fluctuations. We conducted a 7-year capture-mark-recapture study to monitor seasonal and multiannual patterns of the PUUV infection rate in bank vole populations exhibiting a 3-year density cycle. Infected bank voles were most abundant in mid-winter months during years of increasing or peak host density. Prevalence of PUUV infection in bank voles exhibited a regular, seasonal pattern reflecting the annual population turnover and accumulation of infections within each year cohort. In autumn, the PUUV transmission rate tracked increasing host abundance, suggesting a density-dependent transmission. However, prevalence of PUUV infection was similar during the increase and peak years of the density cycle despite a twofold difference in host density. This may result from the high proportion of individuals carrying maternal antibodies constraining transmission during the cycle peak years. Our exceptionally intensive and long-term dataset provides a solid basis on which to develop models to predict the dynamic public health threat posed by PUUV in northern Europe.

Population genetic dynamics of an invasion reconstructed from the sediment egg bank.

PubMed

Möst, Markus; Oexle, Sarah; Marková, Silvia; Aidukaite, Dalia; Baumgartner, Livia; Stich, Hans-Bernd; Wessels, Martin; Martin-Creuzburg, Dominik; Spaak, Piet

2015-08-01

Biological invasions are a global issue with far-reaching consequences for single species, communities and whole ecosystems. Our understanding of modes and mechanisms of biological invasions requires knowledge of the genetic processes associated with successful invasions. In many instances, this information is particularly difficult to obtain as the initial phases of the invasion process often pass unnoticed and we rely on inferences from contemporary population genetic data. Here, we combined historic information with the genetic analysis of resting eggs to reconstruct the invasion of Daphnia pulicaria into Lower Lake Constance (LLC) in the 1970s from the resting egg bank in the sediments. We identified the invader as 'European D. pulicaria' originating from meso- and eutrophic lowland lakes and ponds in Central Europe. The founding population was characterized by extremely low genetic variation in the resting egg bank that increased considerably over time. Furthermore, strong evidence for selfing and/or biparental inbreeding was found during the initial phase of the invasion, followed by a drop of selfing rate to low levels in subsequent decades. Moreover, the increase in genetic variation was most pronounced during early stages of the invasion, suggesting additional introductions during this period. Our study highlights that genetic data covering the entire invasion process from its beginning can be crucial to accurately reconstruct the invasion history of a species. We show that propagule banks can preserve such information enabling the study of population genetic dynamics and sources of genetic variation in successful invasive populations. © 2015 John Wiley & Sons Ltd.

Modeling the effects of LID practices on streams health at watershed scale

NASA Astrophysics Data System (ADS)

Shannak, S.; Jaber, F. H.

2013-12-01

Increasing impervious covers due to urbanization will lead to an increase in runoff volumes, and eventually increase flooding. Stream channels adjust by widening and eroding stream bank which would impact downstream property negatively (Chin and Gregory, 2001). Also, urban runoff drains in sediment bank areas in what's known as riparian zones and constricts stream channels (Walsh, 2009). Both physical and chemical factors associated with urbanization such as high peak flows and low water quality further stress aquatic life and contribute to overall biological condition of urban streams (Maxted et al., 1995). While LID practices have been mentioned and studied in literature for stormwater management, they have not been studied in respect to reducing potential impact on stream health. To evaluate the performance and the effectiveness of LID practices at a watershed scale, sustainable detention pond, bioretention, and permeable pavement will be modeled at watershed scale. These measures affect the storm peak flows and base flow patterns over long periods, and there is a need to characterize their effect on stream bank and bed erosion, and aquatic life. These measures will create a linkage between urban watershed development and stream conditions specifically biological health. The first phase of this study is to design and construct LID practices at the Texas A&M AgriLife Research and Extension Center-Dallas, TX to collect field data about the performance of these practices on a smaller scale. The second phase consists of simulating the performance of LID practices on a watershed scale. This simulation presents a long term model (23 years) using SWAT to evaluate the potential impacts of these practices on; potential stream bank and bed erosion, and potential impact on aquatic life in the Blunn Watershed located in Austin, TX. Sub-daily time step model simulations will be developed to simulate the effectiveness of the three LID practices with respect to reducing potential erosion from stream beds and banks by studying annual average excess shear and reducing potential impact on aquatic life by studying rapid changes and variation in flow regimes in urban streams. This study will contribute to develop a methodology that evaluates the impact of hydrological changes that occur due to urban development, on aquatic life, stream bank and bed erosion. This is an ongoing research project and results will be shared and discussed at the conference.

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank

PubMed Central

Nadzirin, Nurul; Willett, Peter; Artymiuk, Peter J.; Firdaus-Raih, Mohd

2013-01-01

We describe a server that allows the interrogation of the Protein Data Bank for hypothetical 3D side chain patterns that are not limited to known patterns from existing 3D structures. A minimal side chain description allows a variety of side chain orientations to exist within the pattern, and generic side chain types such as acid, base and hydroxyl-containing can be additionally deployed in the search query. Moreover, only a subset of distances between the side chains need be specified. We illustrate these capabilities in case studies involving arginine stacks, serine-acid group arrangements and multiple catalytic triad-like configurations. The IMAAAGINE server can be accessed at http://mfrlab.org/grafss/imaaagine/. PMID:23716645

Populations of weedy crop–wild hybrid beets show contrasting variation in mating system and population genetic structure

PubMed Central

Arnaud, Jean-François; Fénart, Stéphane; Cordellier, Mathilde; Cuguen, Joël

2010-01-01

Reproductive traits are key parameters for the evolution of invasiveness in weedy crop–wild hybrids. In Beta vulgaris, cultivated beets hybridize with their wild relatives in the seed production areas, giving rise to crop–wild hybrid weed beets. We investigated the genetic structure, the variation in first-year flowering and the variation in mating system among weed beet populations occurring within sugar beet production fields. No spatial genetic structure was found for first-year populations composed of F1 crop–wild hybrid beets. In contrast, populations composed of backcrossed weed beets emerging from the seed bank showed a strong isolation-by-distance pattern. Whereas gametophytic self-incompatibility prevents selfing in wild beet populations, all studied weed beet populations had a mixed-mating system, plausibly because of the introgression of the crop-derived Sf gene that disrupts self-incompatibility. No significant relationship between outcrossing rate and local weed beet density was found, suggesting no trends for a shift in the mating system because of environmental effects. We further reveal that increased invasiveness of weed beets may stem from positive selection on first-year flowering induction depending on the B gene inherited from the wild. Finally, we discuss the practical and applied consequences of our findings for crop-weed management. PMID:25567926

Temporal and spatial variations in suspended matter in continental shelf and slope waters off the north-eastern United States

USGS Publications Warehouse

Bothner, Michael H.; Parmenter, Carol M.; Milliman, John D.

1981-01-01

Seston in waters of Georges Bank originates primarily from biological production and from resuspension of bottom sediments. The concentrations of suspended matter observed on the central shoals are more influenced by storms than by seasonal changes. Winter storms produce highest concentrations of non-combustible material throughout the water column, and summer storms appear to increase biological production by mixing additional nutrients into the photic zone. On the south-east flank of the bank, in water depths between 80 and 200 in, the concentrations of total suspended matter and non-combustible material show little variation compared with the central shoals, and storm effects are far less noticeable.Highest concentrations (>15 mg 1−1) of suspended matter occur in bottom waters south of Nantucket Island after winter storms and appear to be primarily resuspended bottom sediment. Resuspended sediment is also common in near-bottom waters of the south-western Gulf of Maine, and occasionally near the intersection of the shelf/slope water mass front and the bottom.Seasonal variations were observed in the distribution and species composition of phytoplankton. Coccoliths are predominant on the central bank during the winter, but during the spring and summer they are concentrated on the eastern flank at deeper depths.

What are the contemporary sources of sediment in the Mississippi River?

NASA Astrophysics Data System (ADS)

Hassan, M. A.; Roberge, L.; Church, M.; More, M.; Donner, S. D.; Leach, J.; Ali, K. F.

2017-09-01

Within the last two centuries, the Mississippi River basin has been transformed by changes in land use practices, dam construction, and training of the rivers for navigation. Here we analyze the contemporary patterns of fluvial sediment yield in the Mississippi River basin using all available data in order to assess the influence of regional land condition on the variation of sediment yield within the basin. We develop regional-scale relations between specific sediment yield (yield per unit area) and drainage area to reveal contemporary regional sediment yield patterns and source areas of riverine sediments. Extensive upland erosion before the development of soil conservation practices exported large amounts of sediment to the valleys and floodplains. We show that sediment today is sourced primarily along the river valleys from arable land, and from stream bank and channel erosion, with sediment yields from areas dominated by arable land 2 orders of magnitude greater than that of grassland dominated areas. Comparison with the "T factor," a commonly quoted measure of agricultural soil resilience suggests that the latter may not reflect contemporary soil loss from the landscape.

Patterns of orthopox virus wild rodent hosts in South Germany.

PubMed

Essbauer, Sandra; Hartnack, Sonja; Misztela, Krystian; Kiessling-Tsalos, Judith; Bäumler, Walter; Pfeffer, Martin

2009-06-01

Although cowpox virus (CPXV) infections in a variety of dead-end hosts have been investigated in Germany for more than 50 years, data on species and geographical distribution of CPXV in reservoir hosts are sparse. Here we present the first comprehensive study of 825 rodents that have been collected in Bavaria, Southern Germany. In summary, six different rodent species (Apodemus flavicollis, Myodes glareolus, Microtus arvalis, Apodemus sylvaticus, Microtus agrestis, and Arvicola amphibius) were trapped at three main trapping sites and investigated using a serum neutralization test (SNT). Prevalence of orthopox virus (OPV)-neutralizing antibodies was (with exception of one trapping site) highest in bank voles, ranging from 24.5% to 42.4%; often with SNT titers > or =96. Two up to 25% of yellow-necked mice were OPV sero-positive, but wood mice only at one site with 5.5%. Up to 7.7% of common voles were found to be OPV seroreactive, while M. agrestis and A. amphibius only sporadically showed seroreactivity. Further analyses of a subset of 450 bank voles and yellow-necked mice trapped at one site over a 18-month period revealed that male yellow-necked mice and female gravid yellow-necked mice had significantly more OPV-neutralizing antibodies. Mean body weight and OPV-seroreactivity were significantly negatively associated in male A. flavicollis. This was not due to shorter body length or smaller body mass index, but previously OPV-infected male A. flavicollis had dramatically reduced mean kidney weights. Seroreactivity in female bank voles was positively related to lung weights. We also found that both male yellow-necked mice and male bank voles with positive SNT titers had higher infestation rates with ectoparasites. We here show for the first time that A. flavicollis beside M. glareolus is a hypothetic host for CPXV, and that there are big geographical and spatial variations concerning the seroprevalence in rodent populations in South Germany.

Liquidity crisis detection: An application of log-periodic power law structures to default prediction

NASA Astrophysics Data System (ADS)

Wosnitza, Jan Henrik; Denz, Cornelia

2013-09-01

We employ the log-periodic power law (LPPL) to analyze the late-2000 financial crisis from the perspective of critical phenomena. The main purpose of this study is to examine whether LPPL structures in the development of credit default swap (CDS) spreads can be used for default classification. Based on the different triggers of Bear Stearns’ near bankruptcy during the late-2000 financial crisis and Ford’s insolvency in 2009, this study provides a quantitative description of the mechanism behind bank runs. We apply the Johansen-Ledoit-Sornette (JLS) positive feedback model to explain the rise of financial institutions’ CDS spreads during the global financial crisis 2007-2009. This investigation is based on CDS spreads of 40 major banks over the period from June 2007 to April 2009 which includes a significant CDS spread increase. The qualitative data analysis indicates that the CDS spread variations have followed LPPL patterns during the global financial crisis. Furthermore, the univariate classification performances of seven LPPL parameters as default indicators are measured by Mann-Whitney U tests. The present study supports the hypothesis that discrete scale-invariance governs the dynamics of financial markets and suggests the application of new and fast updateable default indicators to capture the buildup of long-range correlations between creditors.

Spatial and temporal patterns of bank failure during extreme flood events: Evidence of nonlinearity and self-organised criticality at the basin scale?

NASA Astrophysics Data System (ADS)

Thompson, C. J.; Croke, J. C.; Grove, J. R.

2012-04-01

Non-linearity in physical systems provides a conceptual framework to explain complex patterns and form that are derived from complex internal dynamics rather than external forcings, and can be used to inform modeling and improve landscape management. One process that has been investigated previously to explore the existence of self-organised critical system (SOC) in river systems at the basin-scale is bank failure. Spatial trends in bank failure have been previously quantified to determine if the distribution of bank failures at the basin scale exhibit the necessary power law magnitude/frequency distributions. More commonly bank failures are investigated at a small-scale using several cross-sections with strong emphasis on local-scale factors such as bank height, cohesion and hydraulic properties. Advancing our understanding of non-linearity in such processes, however, requires many more studies where both the spatial and temporal measurements of the process can be used to investigate the existence or otherwise of non-linearity and self-organised criticality. This study presents measurements of bank failure throughout the Lockyer catchment in southeast Queensland, Australia, which experienced an extreme flood event in January 2011 resulting in the loss of human lives and geomorphic channel change. The most dominant form of fluvial adjustment consisted of changes in channel geometry and notably widespread bank failures, which were readily identifiable as 'scalloped' shaped failure scarps. The spatial extents of these were mapped using high-resolution LiDAR derived digital elevation model and were verified by field surveys and air photos. Pre-flood event LiDAR coverage for the catchment also existed allowing direct comparison of the magnitude and frequency of bank failures from both pre and post-flood time periods. Data were collected and analysed within a GIS framework and investigated for power-law relationships. Bank failures appeared random and occurred throughout the basin but plots of magnitude and frequency did display power-law scaling of failures. In addition, there was a lack of site specific correlations between bank failure and other factors such channel width, bank height and stream power. The data are used here to discuss the existence of SOC in fluvial systems and the relative role of local and basin-wide processes in influencing their distribution in space and time.

Health and role functioning: the use of focus groups in the development of an item bank.

PubMed

Anatchkova, Milena D; Bjorner, Jakob B

2010-02-01

Role functioning is an important part of health-related quality of life. However, assessment of role functioning is complicated by the wide definition of roles and by fluctuations in role participation across the life-span. The aim of this study is to explore variations in role functioning across the lifespan using qualitative approaches, to inform the development of a role functioning item bank and to pilot test sample items from the bank. Eight focus groups were conducted with a convenience sample of 38 English-speaking adults recruited in Rhode Island. Participants were stratified by gender and four age groups. Focus groups were taped, transcribed, and analyzed for thematic content. Participants of all ages identified family roles as the most important. There was age variation in the importance of social life roles, with younger and older adults rating them as more important. Occupational roles were identified as important by younger and middle-aged participants. The potential of health problems to affect role participation was recognized. Participants found the sample items easy to understand, response options identical in meaning and preferred five response choices. Participants identified key aspects of role functioning and provided insights on their perception of the impact of health on their role participation. These results will inform item bank generation.

Seasonal variations in composite riverbank stability in the Lower Jingjiang Reach, China

NASA Astrophysics Data System (ADS)

Xia, Junqiang; Zong, Quanli; Deng, Shanshan; Xu, Quanxi; Lu, Jinyou

2014-11-01

Bank erosion is a key process in a fluvial system in the context of river dynamics and geomorphology. Since the operation of the Three Gorges Project (TGP), the Lower Jingjiang Reach (LJR) below the dam has experienced continuous channel degradation, with the phenomenon of bank erosion occurring frequently in local reaches. Therefore it is necessary to quantitatively investigate seasonal variations in the stability of composite riverbanks along the reach in order to better understand the fluvial processes in the reach. Laboratory tests were conducted for the sampled soils at six riverbanks during a field survey, with various bank soil properties being presented for the first time. These test results show that: the cohesive bank soils are relatively loose due to the high water contents of 28.5-40.0% and the low dry densities of 1.31-1.47 tonnes/m3; and the cohesion or angle of internal friction generally decreases with an increase in water content of the cohesive soil. Based on the measured cross-sectional profiles and interpolated hydrological data, the near-bank hydrodynamic conditions and soil parameters of two typical composite riverbanks were then determined during the 2007 hydrological year. An improved method was proposed for calculating the stability at the mode of cantilever failure for the overhanging block of a composite riverbank, and the stability degrees of these two riverbanks were calculated at different stages. These results reveal that: (i) the incipient velocity of the non-cohesive lower bank had a magnitude of 0.4 m/s, less than the mean near-bank velocity of about 1.0 m/s, which led to intensive basal erosion especially during the flood season; (ii) the cohesive upper bank before failure had sufficient strength to resist direct fluvial erosion, but the failed soil mass deposited in the near-bank zone was disintegrated easily with the submerged immersion and was then transported downstream by fluvial entrainment; (iii) the degree of bank stability was relatively lower during the flood season, caused by the integrated effects of a process of severe basal erosion and a lower unit weight of 8.6 kN/m3 for the submerged soil; and (iv) the degree of bank stability was lowest at the recession stage, which was caused by the vanishing of the hydrostatic confining pressure and the larger unit weight of 18.0 kN/m3 for the saturated cohesive soil, because of a rapid drawdown in the in-channel water levels with the TGP operation.

Mycobacteria and allograft heart valve banking: an international survey.

PubMed

Warwick, R M; Magee, J G; Leeming, J P; Graham, J C; Hannan, M M; Chadwick, M; Crook, D W; Yearsley, C P; Rayner, A; Parker, R

2008-03-01

Since the 1970s many tissue banks have been testing allograft heart valves (HVs) for Mycobacterium tuberculosis (MTB). Donor selection for low risk of tuberculosis (TB) was introduced in the 1980s and appears to have reduced the risk of TB transmission. Regulatory guidance does not specify testing for TB, but does exclude donors with a recent history of TB. This survey of HV international bank practices revealed variations in donor selection, testing and processing of valves. Participant banks (from Europe and the USA) reported that over a period of 15 years, HV tissues from 38,413 donors were banked and 32,289 donors were tested for TB, none being positive. HV-associated tissue from 27,840 donors was stained and underwent microscopy; none of these were positive for acid-fast bacilli (AFB). Non-tuberculosis mycobacteria (NTBM) were detected by culture on 24 HVs. It is recommended that HV banks employ donor selection to exclude donors at risk of TB, to culture material for mycobacteria, and to investigate potential sources when clusters of NTBM are found to facilitate corrective and preventative actions.

The role of fluvial sediment supply and river-mouth hydrology in the dynamics of the muddy, Amazon-dominated Amapá-Guianas coast, South America: A three-point research agenda

NASA Astrophysics Data System (ADS)

Anthony, Edward J.; Gardel, Antoine; Proisy, Christophe; Fromard, François; Gensac, Erwan; Peron, Christina; Walcker, Romain; Lesourd, Sandric

2013-07-01

The morphology and sediment dynamics of the 1500 km-long coast of South America between the mouths of the Amazon and the Orinoco Rivers are largely dependent on the massive suspended-sediment discharge of the Amazon, part of which is transported alongshore as mud banks. These mud banks have an overwhelming impact on the geology, the geomorphology, the ecology and the economy of this coast. Although numerous field investigations and remote sensing studies have considerably enhanced our understanding of the dynamics of this coast over the last three decades, much still remains to be understood of the unique functional mechanisms and processes driving its evolution. Among the themes that we deem as requiring further attention three come out as fundamental. The first concerns the mechanisms of formation of individual mud banks from mud streaming on the shelf off the mouth of the Amazon. An unknown quantity of the fluid mud generated by offshore estuarine front activity is transported shoreward and progressively forms mud banks on the Amapá coast, Brazil. The volume of each mud bank can contain from the equivalent of the annual mud supply of the Amazon to several times this annual sediment discharge. The mechanisms by which individual banks are generated from the Amazon turbidity maximum are still to be elucidated. Areas of research include regional mesoscale oceanographic conditions and mud supply from the Amazon. The second theme is that of variations in rates of migration of mud banks, which influence patterns of coastal accretion. Research emphasis needs to be placed on the analysis of both regional meteorological-hydrodynamic forcing and distant Atlantic forcing, as well as on the hydrology of the large rivers draining the Guyana Shield. The rivers appear to generate significant offshore deflection of mud banks in transit alongshore, through a hydraulic-groyne effect. This may favour both muddy accretion on the updrift coast and downdrift mud liquefaction with probably lessened muddy deposition. The third theme concerns sand supply by the Guiana Shield rivers. The rare sand deposits are important in providing sites for human settlements and routes and for nesting by marine turtles. The limited presence of sand bodies on this coast may reflect 'mud blanketing', a hypothesis that requires verification through high-resolution seismic analyses of shelf deposits and coring operations. The large Guiana Shield rivers, especially in Surinam and Guyana, have supplied sand for the construction of significant bands of cheniers, probably enhanced by the afore-mentioned downdrift hydraulic-groyne effect on hindered mud deposition. In all the three themes of this future research agenda, two central elements are the sediment input of the rivers of the Amazon basin, starting with the massive mud supply from the Amazon catchment itself, followed by sand inputs by the Guiana Shield rivers and their river-mouth effects on mud banks.

Cold-water coral banks and submarine landslides: a review

NASA Astrophysics Data System (ADS)

de Mol, Ben; Huvenne, Veerle; Canals, Miquel

2009-06-01

This paper aims to review the relation between cold-water coral bank development and submarine landslides. Both are common features on continental margins, but so far it has not been reviewed which effect—if at all—they may have upon each other. Indirect and direct relations between coral banks and landslides are evaluated here, based on four case studies: the Magellan Mound Province in the Porcupine Seabight, where fossil coral banks appear partly on top of a buried slide deposit; the Sula Ridge Reef Complex and the Storegga landslide both off mid-Norway; and the Mauritania coral bank province, associated with the Mauritanian Slide Complex. For each of these locations, positive and negative relationships between both features are discussed, based on available datasets. Locally submarine landslides might directly favour coral bank development by creating substratum where corals can settle on, enhancing turbulence due to abrupt seabed morphological variations and, in some cases, causing fluid seepage. In turn, some of these processes may contribute to increased food availability and lower sedimentation rates. Landslides can also affect coral bank development by direct erosion of the coral banks, and by the instantaneous increase of turbidity, which may smother the corals. On the other hand, coral banks might have a stabilising function and delay or stop the headwall retrogradation of submarine landslides. Although local relationships can be deduced from these case studies, no general and direct relationship exists between submarine landslides and cold-water coral banks.

Food insecurity and dietary intake of immigrant food bank users.

PubMed

Rush, Timothy J; Ng, Victor; Irwin, Jennifer D; Stitt, Larry W; He, Meizi

2007-01-01

The degree of food insecurity and dietary intake was examined in adult Colombians who are new immigrants to Canada and use a food bank. In-person surveys were conducted on a convenience sample of 77 adult Colombian immigrant food bank users in London, Ontario. Degree of food insecurity was measured by the Radimer/Cornell questionnaire, food intakes by 24-hour recall, sociodemographics, and questionnaires about changes in dietary patterns before and after immigration. Thirty-six men and 41 women participated in the study. Despite being highly educated, all respondents had experienced some form of food insecurity within the previous 30 days. The degree of food insecurity seems to be inversely associated with income and length of residency in Canada. Total daily energy intake was low, with a mean value of 1,568.3 +/- 606.0 kcal (6,217.5 +/- 2,336.4 kJ). In particular, a large proportion of participants consumed a diet low in fruits and vegetables (73%) and milk and dairy products (58%). Colombian immigrant food bank users new to Canada experience various degrees of food insecurity, which is associated with inadequate food intake. Interventions are needed to assist this population with adapting to society while concurrently sustaining healthy eating patterns.

Enhanced visualization of abnormalities in digital-mammographic images

NASA Astrophysics Data System (ADS)

Young, Susan S.; Moore, William E.

2002-05-01

This paper describes two new presentation methods that are intended to improve the ability of radiologists to visualize abnormalities in mammograms by enhancing the appearance of the breast parenchyma pattern relative to the fatty-tissue surroundings. The first method, referred to as mountain- view, is obtained via multiscale edge decomposition through filter banks. The image is displayed in a multiscale edge domain that causes the image to have a topographic-like appearance. The second method displays the image in the intensity domain and is referred to as contrast-enhancement presentation. The input image is first passed through a decomposition filter bank to produce a filtered output (Id). The image at the lowest resolution is processed using a LUT (look-up table) to produce a tone scaled image (I'). The LUT is designed to optimally map the code value range corresponding to the parenchyma pattern in the mammographic image into the dynamic range of the output medium. The algorithm uses a contrast weight control mechanism to produce the desired weight factors to enhance the edge information corresponding to the parenchyma pattern. The output image is formed using a reconstruction filter bank through I' and enhanced Id.

The French Atlantic littoral and the Massif Armoricain, part 1. [Island of Jersey, Fromentine, Loire Estuary, and Mont Saint-Michel Bay

NASA Technical Reports Server (NTRS)

Verger, F. (Principal Investigator); Monget, J. M.; Guerin, O.; Poisson, R. M.; Thomas, Y.

1977-01-01

The author has identified the following significant results. For interpretation of Isle of Jersey imagery, two types of taxons were defined according to their variability in time. On the whole, taxons with a similar spectral signature were opposed to those with strongly varying spectral signature. The taxon types were low diachronic variations and strong diachronic variation. Imagery interpretation was restricted to the landward part of the Fromentine area, including the sand beaches which were often difficult to spectrally separate from the barren coastal dunes in the southern part of Noirmoutier Island as well as along the Breton marsh. From 1972 to 1976, sandbanks reduced in area. Two high river discharge images showed over a two year period an identical outline for the Bilho bank to seaward, whereas upstream, the bank has receeded in the same time to a line joining Paimboeuf to Montoir. The Brillantes bank has receeded at both ends, partly due to dredging operations in the access channel to Donges harbor.

Latitudinal and stock-specific variation in size- and age-at-maturity of female winter flounder, Pseudopleuronectes americanus, as determined with gonad histology

NASA Astrophysics Data System (ADS)

McBride, Richard S.; Wuenschel, Mark J.; Nitschke, Paul; Thornton, Grace; King, Jeremy R.

2013-01-01

Female winter flounder were examined using gonad histology to determine the adequacy of routine macroscopic maturity classification methods and to determine the spatial variation in size and age of maturity in U.S. waters. Sampling occurred in spring and autumn, which was adequate to collect immature, mature, spawning-active, and non-active females. Females were collected in coastal waters from Delaware Bay, USA, to the Scotian Shelf, Canada, including in Long Island Sound and on Georges Bank, which covered all U.S. stock areas. Mature fish spawned in spring, when gonads comprised up to 30% of the total body weight. Direct comparisons of maturity assignment by macroscopic versus microscopic methods demonstrated that both schemes are compatible, but the more cost-effective macroscopic method had trouble distinguishing larger immature from smaller resting females. Spatial comparisons, using gonad histology only, supported the existence of three stocks in U.S. waters, but also revealed significant variation in age at maturity within the two coastal stocks. Age-at-maturity was more variable than size-at-maturity, which is consistent with known stock-specific patterns of growth rates and a postulated life history tradeoff to delay maturity until a size threshold is reached. The within-stock variation in median age at maturity, about one year for coastal stocks, recommends further investigation of using static, stock-specific maturity ogives to calculate reference points for management.

Climatic teleconnections between the subtropical and polar North Atlantic during the Last Interglacial period (MIS5e)

NASA Astrophysics Data System (ADS)

Bauch, H. A.; Zhuravleva, A.

2017-12-01

Meridional gradients in sea surface temperature (SST) control ocean-atmosphere circulation patterns and, thus, regulate the global climate. Here we reconstruct variability of these gradients in the course of the Last Interglacial (MIS5e), by using sediment records from the low and high latitude North Atlantic which are linked via the Gulf Stream.In the Nordic Seas, i.e., at the northern end of the Gulf Stream extension, strong post-Saalian meltwater discharge reduced northward-directed transport of surface oceanic heat until the mid-MIS5e, resulting in a late and rather weak SST peak. To decipher the corresponding climatic changes in the area of the Gulf Stream origin, we employ stable isotopes data, planktic foraminifera assemblages as well as a new alkenone paleotemperature record from core drilled on the upper northern slope of the Little Bahama Bank. In addition, chemical composition of sediments (XRF data) was used to asses past sea level fluctuations and sedimentation regimes on this shallow-water carbonate bank. Significant variations in Sr/Ca ratios point to a two-fold structure of the Last Interglacial. Stabilized Sr/Ca values were reached only during the second phase of MIS5e, possibly representing the interval of maximum bank-top flooding after the northern hemisphere deglaciation terminated. Faunal-based proxies as well as oxygen isotopic gradients between surface and bottom-dwelling foraminifera corroborate existence of the two major climatic phases within the Last Interglacial, in agreement with the respective development in the polar region. This further suggests a strong climatic coupling between the subtropical and high-latitude North Atlantic with important implications for meridional SST gradients during the Last Interglacial.

Fish communities associated with cold-water corals vary with depth and substratum type

NASA Astrophysics Data System (ADS)

Milligan, Rosanna J.; Spence, Gemma; Roberts, J. Murray; Bailey, David M.

2016-08-01

Understanding the processes that drive the distribution patterns of organisms and the scales over which these processes operate are vital when considering the effective management of species with high commercial or conservation value. In the deep sea, the importance of scleractinian cold-water corals (CWCs) to fish has been the focus of several studies but their role remains unclear. We propose this may be due to the confounding effects of multiple drivers operating over multiple spatial scales. The aims of this study were to investigate the role of CWCs in shaping fish community structure and individual species-habitat associations across four spatial scales in the NE Atlantic ranging from "regions" (separated by >500 km) to "substratum types" (contiguous). Demersal fish and substratum types were quantified from three regions: Logachev Mounds, Rockall Bank and Hebrides Terrace Seamount (HTS). PERMANOVA analyses showed significant differences in community composition between all regions which were most likely caused by differences in depths. Within regions, significant variation in community composition was recorded at scales of c. 20-3500 m. CWCs supported significantly different fish communities to non-CWC substrata at Rockall Bank, Logachev and the HTS. Single-species analyses using generalised linear mixed models showed that Sebastes sp. was strongly associated with CWCs at Rockall Bank and that Neocyttus helgae was more likely to occur in CWCs at the HTS. Depth had a significant effect on several other fish species. The results of this study suggest that the importance of CWCs to fish is species-specific and depends on the broader spatial context in which the substratum is found. The precautionary approach would be to assume that CWCs are important for associated fish, but must acknowledge that CWCs in different depths will not provide redundancy or replication within spatially-managed conservation networks.

[Helminthic fauna of commercial fishes from the Saya-de-Malya bank (Indian Ocean)].

PubMed

Parukhin, A M

1988-01-01

The data on infestation of 8 species of commercial fishes from Saya-de-Malya bank (the Indian Ocean) are presented. 43 helminth species were identified: 10 Monogenea species, 18 trematode, 7 cestode and 8 nematode species. The mature worms are observed to be related to a certain host, whereas the nematode and cestode larvae have wide specificity. High infestation degree by Anisakis larvae is found in fishes, especially in Carangidae. At the bank area fishes are found to be free from Acanthocephala while those Acanthocephala are found in fishes from other areas of the Indian Ocean which may be attributed to the specific diet at the Saya-de-Malya bank. On the whole the helminth fauna of fishes examined at the Saya-de-Malya bank does not demonstrate the endemic pattern. The most specific helminth species were found in some fish species.

To what extent do long-duration high-volume dam releases influence river-aquifer interactions? A case study in New South Wales, Australia

NASA Astrophysics Data System (ADS)

Graham, P. W.; Andersen, M. S.; McCabe, M. F.; Ajami, H.; Baker, A.; Acworth, I.

2015-03-01

Long-duration high-volume dam releases are unique anthropogenic events with no naturally occurring equivalents. The impact from such dam releases on a downstream Quaternary alluvial aquifer in New South Wales, Australia, is assessed. It is observed that long-duration (>26 days), high-volume dam releases (>8,000 ML/day average) result in significant variations in river-aquifer interactions. These variations include a flux from the river to the aquifer up to 6.3 m3/day per metre of bank (at distances of up to 330 m from the river bank), increased extent and volume of recharge/bank storage, and a long-term (>100 days) reversal of river-aquifer fluxes. In contrast, during lower-volume events (<2,000 ML/day average) the flux was directed from the aquifer to the river at rates of up to 1.6 m3/day per metre of bank. A groundwater-head prediction model was constructed and river-aquifer fluxes were calculated; however, predicted fluxes from this method showed poor correlation to fluxes calculated using actual groundwater heads. Long-duration high-volume dam releases have the potential to skew estimates of long-term aquifer resources and detrimentally alter the chemical and physical properties of phreatic aquifers flanking the river. The findings have ramifications for improved integrated management of dam systems and downstream aquifers.

Monetary Expansion and the Banking Lending Channel.

PubMed

Tabak, Benjamin Miranda; Moreira, Tito Belchior Silva; Fazio, Dimas Mateus; Cavalcanti, André Luiz Cordeiro; Cunha, George Henrrique de Moura

2016-01-01

This paper examines the bank lending channel, which considers how monetary authority actions affect the variation of loans. We focus on the BRICS (Brazil, Russia, India, China and South Africa) totalizing 1254 banks from five countries in the period 2000-2012 (totalizing 13 years). The empirical results show that the effect of money supply growth on the growth of loans is non-linear and inverted U-shaped. In this context, our results show empirical evidence expansionary monetary policies do not increase the propensity of economic agents to systematically take greater risks on the market. After a certain level of money stock, increases in the money supply do not lead to increased negotiated credit.

Monetary Expansion and the Banking Lending Channel

PubMed Central

Moreira, Tito Belchior Silva; Fazio, Dimas Mateus; Cavalcanti, André Luiz Cordeiro; Cunha, George Henrrique de Moura

2016-01-01

This paper examines the bank lending channel, which considers how monetary authority actions affect the variation of loans. We focus on the BRICS (Brazil, Russia, India, China and South Africa) totalizing 1254 banks from five countries in the period 2000–2012 (totalizing 13 years). The empirical results show that the effect of money supply growth on the growth of loans is non-linear and inverted U-shaped. In this context, our results show empirical evidence expansionary monetary policies do not increase the propensity of economic agents to systematically take greater risks on the market. After a certain level of money stock, increases in the money supply do not lead to increased negotiated credit. PMID:27716816

1. VIEW OF PATTERN STORAGE BUILDING NO. 5 (wooden structure ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. VIEW OF PATTERN STORAGE BUILDING NO. 5 (wooden structure to right) AND NO. 6 (brick structure to the left, ca. 1891) ON THE EASTERN BANK OF THE STONY CREEK RIVER. Brick foundation for the pump machinery and brick conduit tunnel are still intact in the basement of Pattern Storage Building No. 6. - Johnson Steel Street Rail Company, Pattern Storage Building, 525 Central Avenue, Johnstown, Cambria County, PA

PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank.

PubMed

Sehnal, David; Pravda, Lukáš; Svobodová Vařeková, Radka; Ionescu, Crina-Maria; Koča, Jaroslav

2015-07-01

Well defined biomacromolecular patterns such as binding sites, catalytic sites, specific protein or nucleic acid sequences, etc. precisely modulate many important biological phenomena. We introduce PatternQuery, a web-based application designed for detection and fast extraction of such patterns. The application uses a unique query language with Python-like syntax to define the patterns that will be extracted from datasets provided by the user, or from the entire Protein Data Bank (PDB). Moreover, the database-wide search can be restricted using a variety of criteria, such as PDB ID, resolution, and organism of origin, to provide only relevant data. The extraction generally takes a few seconds for several hundreds of entries, up to approximately one hour for the whole PDB. The detected patterns are made available for download to enable further processing, as well as presented in a clear tabular and graphical form directly in the browser. The unique design of the language and the provided service could pave the way towards novel PDB-wide analyses, which were either difficult or unfeasible in the past. The application is available free of charge at http://ncbr.muni.cz/PatternQuery. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Selective predation on hantavirus-infected voles by owls and confounding effects from landscape properties.

PubMed

Khalil, Hussein; Ecke, Frauke; Evander, Magnus; Hörnfeldt, Birger

2016-06-01

It has been suggested that predators may protect human health through reducing disease-host densities or selectively preying on infected individuals from the population. However, this has not been tested empirically. We hypothesized that Tengmalm's owl (Aegolius funereus) selectively preys on hantavirus-infected individuals of its staple prey, the bank vole (Myodes glareolus). Bank voles are hosts of Puumala hantavirus, which causes a form of hemorrhagic fever in humans. Selective predation by owls on infected voles may reduce human disease risk. We compared the prevalence of anti-Puumala hantavirus antibodies (seroprevalence), in bank voles cached by owls in nest boxes to seroprevalence in voles trapped in closed-canopy forest around each nest box. We found no general difference in seroprevalence. Forest landscape structure could partly account for the observed patterns in seroprevalence. Only in more connected forest patches was seroprevalence in bank voles cached in nest boxes higher than seroprevalence in trapped voles. This effect disappeared with increasing forest patch isolation, as seroprevalence in trapped voles increased with forest patch isolation, but did not in cached voles. Our results suggest a complex relationship between zoonotic disease prevalence in hosts, their predators, and landscape structure. Some mechanisms that may have caused the seroprevalence patterns in our results include higher bank vole density in isolated forest patches. This study offers future research potential to shed further light on the contribution of predators and landscape properties to human health.

Colombia a Source of Cacao Genetic Diversity As Revealed by the Population Structure Analysis of Germplasm Bank of Theobroma cacao L.

PubMed

Osorio-Guarín, Jaime A; Berdugo-Cely, Jhon; Coronado, Roberto Antonio; Zapata, Yeny Patricia; Quintero, Constanza; Gallego-Sánchez, Gerardo; Yockteng, Roxana

2017-01-01

Beans of the species Theobroma cacao L., also known as cacao, are the raw material to produce chocolate. Colombian cacao has been classified as a fine flavor cacao that represents the 5% of cacao world's production. Colombian genetic resources from this species are conserved in ex situ and in-field germplasm banks, since T. cacao has recalcitrant seeds to desication and long-term storage. Currently, the collection of T. cacao of the Colombian Corporation of Agricultural Research (CORPOICA) has approximately 700 germplasm accessions. We conducted a molecular analysis of Corpoica's cacao collection and a morphological characterization of some accessions with the goal to study its genetic diversity and population structure and, to select interesting accessions for the cacao's breeding program. Phenotypic evaluation was performed based on 18 morphological traits and 4 biochemical traits. PCA analysis of morphological traits explained 60.6% of the total variation in seven components and 100% of the total variation of biochemical traits in four components, grouping the collection in 4 clusters for both variables. We explored 565 accessions from Corpoica's germplasm and 252 accessions from reference populations using 96 single nucleotide polymorphism (SNP) molecular markers. Molecular patterns of cacao Corpoica's collection were obtained amplifying specific alleles in a Fluidigm platform that used integrated circuits of fluids. Corpoica's collection showed highest genetic diversity [Expected Heterozygosity ( H E = 0.314), Observed Heterozygosity ( H O = 0.353)] that is reduced when reference populations were included in the dataset ( H E = 0.294, H O = 0.261). The collection was divided into four clusters based on population structure analysis. Cacao accessions from distinct groups showed some taxonomic concordance and reflected their geographic origins. For instance, accessions classified as Criollo were clearly differentiated in one group and we identified two new Colombian genetic groups. Using a number of allelic variations based on 87 SNP markers and 22 different morphological/biochemical traits, a core collection with a total of 232 accessions was selected as a primary genetic resource for cacao breeders.

Colombia a Source of Cacao Genetic Diversity As Revealed by the Population Structure Analysis of Germplasm Bank of Theobroma cacao L.

PubMed Central

Osorio-Guarín, Jaime A.; Berdugo-Cely, Jhon; Coronado, Roberto Antonio; Zapata, Yeny Patricia; Quintero, Constanza; Gallego-Sánchez, Gerardo; Yockteng, Roxana

2017-01-01

Beans of the species Theobroma cacao L., also known as cacao, are the raw material to produce chocolate. Colombian cacao has been classified as a fine flavor cacao that represents the 5% of cacao world’s production. Colombian genetic resources from this species are conserved in ex situ and in-field germplasm banks, since T. cacao has recalcitrant seeds to desication and long-term storage. Currently, the collection of T. cacao of the Colombian Corporation of Agricultural Research (CORPOICA) has approximately 700 germplasm accessions. We conducted a molecular analysis of Corpoica’s cacao collection and a morphological characterization of some accessions with the goal to study its genetic diversity and population structure and, to select interesting accessions for the cacao’s breeding program. Phenotypic evaluation was performed based on 18 morphological traits and 4 biochemical traits. PCA analysis of morphological traits explained 60.6% of the total variation in seven components and 100% of the total variation of biochemical traits in four components, grouping the collection in 4 clusters for both variables. We explored 565 accessions from Corpoica’s germplasm and 252 accessions from reference populations using 96 single nucleotide polymorphism (SNP) molecular markers. Molecular patterns of cacao Corpoica’s collection were obtained amplifying specific alleles in a Fluidigm platform that used integrated circuits of fluids. Corpoica’s collection showed highest genetic diversity [Expected Heterozygosity (HE = 0.314), Observed Heterozygosity (HO = 0.353)] that is reduced when reference populations were included in the dataset (HE = 0.294, HO = 0.261). The collection was divided into four clusters based on population structure analysis. Cacao accessions from distinct groups showed some taxonomic concordance and reflected their geographic origins. For instance, accessions classified as Criollo were clearly differentiated in one group and we identified two new Colombian genetic groups. Using a number of allelic variations based on 87 SNP markers and 22 different morphological/biochemical traits, a core collection with a total of 232 accessions was selected as a primary genetic resource for cacao breeders. PMID:29209353

Glacial landforms on German Bank, Scotian Shelf: evidence for Late Wisconsinan ice-sheet dynamics and implications for the formation of De Geer moraines

USGS Publications Warehouse

Todd, Brian J.; Valentine, Page C.; Longva, Oddvar; Shaw, John

2007-01-01

The extent and behaviour of the southeast margin of the Laurentide Ice Sheet in Atlantic Canada is of significance in the study of Late Wisconsinan ice sheet-ocean interactions. Multibeam sonar imagery of subglacial, ice-marginal and glaciomarine landforms on German Bank, Scotian Shelf, provides evidence of the pattern of glacial-dynamic events in the eastern Gulf of Maine. Northwest-southeast trending drumlins and megaflutes dominate northern German Bank. On southern German Bank, megaflutes of thin glacial deposits create a distinct northwest-southeast grain. Lobate regional moraines (>10km long) are concave to the northwest, up-ice direction and strike southwest-northeast, normal to the direction of ice flow. Ubiquitous, overlying De Geer moraines (

Relationship between seed bank expression, adult longevity and aridity in species of Chaetanthera (Asteraceae) in central Chile.

PubMed

Arroyo, M T K; Chacon, P; Cavieres, L A

2006-09-01

Broad surveys have detected inverse relationships between seed and adult longevity and between seed size and adult longevity. However, low and unpredictable precipitation is also associated with seed bank (SB) expression in semi-arid and arid areas. The relationship between adult longevity, SB formation, seed mass and aridity is examined in annual and perennial herbs of Chaetanthera (Asteraceae) from the Chilean Mediterranean-type climate and winter-rainfall desert areas over a precipitation range of one order of magnitude. Seeds of 18 species and subtaxa (32 populations) were buried in field locations, and exhumed after two successive germination periods. Seeds not germinating in the field were tested in a growth chamber, and remnant intact seed tested for viability. Seed banks were classed as transient or persistent. The effect of life form, species, population and burial time on persistent SB size was assessed with factorial ANOVA. Persistent seed bank size was compared with the Martonne aridity index (shown to be a surrogate for inter-annual variation in precipitation) and seed size using linear regression. ANCOVA assessed the effect of life-form on SB size with aridity as covariate. Three species had a transient SB and 15 a persistent SB. ANOVA revealed a significant effect of life-form on SB size with annuals having larger SB size and greater capacity to form a persistent SB than perennials. Significant inter-population variation in SB size was found in 64% of cases. Seed mass was negatively correlated with persistent SB size. Persistent seed bank size was significantly correlated with the Martonne aridity index in the perennial and annual species, with species from more arid areas having larger persistent SBs. However, when aridity was considered as a covariate, ANCOVA revealed no significant differences between the annual and perennial herbs. Persistent seed bank size in Chaetanthera appears to reflect environmental selection rather than any trade-off with adult longevity.

Diurnal variation in rates of calcification and carbonate sediment dissolution in Florida Bay

USGS Publications Warehouse

Yates, K.K.; Halley, R.B.

2006-01-01

Water quality and circulation in Florida Bay (a shallow, subtropical estuary in south Florida) are highly dependent upon the development and evolution of carbonate mud banks distributed throughout the Bay. Predicting the effect of natural and anthropogenic perturbations on carbonate sedimentation requires an understanding of annual, seasonal, and daily variations in the biogenic and inorganic processes affecting carbonate sediment precipitation and dissolution. In this study, net calcification rates were measured over diurnal cycles on 27 d during summer and winter from 1999 to 2003 on mud banks and four representative substrate types located within basins between mud banks. Substrate types that were measured in basins include seagrass beds of sparse and intermediate density Thalassia sp., mud bottom, and hard bottom communities. Changes in total alkalinity were used as a proxy for calcification and dissolution. On 22 d (81%), diurnal variation in rates of net calcification was observed. The highest rates of net carbonate sediment production (or lowest rates of net dissolution) generally occurred during daylight hours and ranged from 2.900 to -0.410 g CaCO3 m-2 d-1. The lowest rates of carbonate sediment production (or net sediment dissolution) occurred at night and ranged from 0.210 to -1.900 g CaCO3 m -2 night-1. During typical diurnal cycles, dissolution during the night consumed an average of 29% of sediment produced during the day on banks and 68% of sediment produced during the day in basins. Net sediment dissolution also occurred during daylight, but only when there was total cloud cover, high turbidity, or hypersalinity. Diurnal variation in calcification and dissolution in surface waters and surface sediments of Florida Bay is linked to cycling of carbon dioxide through photosynthesis and respiration. Estimation of long-term sediment accumulation rates from diurnal rates of carbonate sediment production measured in this study indicates an overall average accumulation rate for Florida Bay of 8.7 cm 1000 yr-1 and suggests that sediment dissolution plays a more important role than sediment transport in loss of sediment from Florida Bay. ?? 2006 Estuarine Research Federation.

A portable pattern-based design technology co-optimization flow to reduce optical proximity correction run-time

NASA Astrophysics Data System (ADS)

Chen, Yi-Chieh; Li, Tsung-Han; Lin, Hung-Yu; Chen, Kao-Tun; Wu, Chun-Sheng; Lai, Ya-Chieh; Hurat, Philippe

2018-03-01

Along with process improvement and integrated circuit (IC) design complexity increased, failure rate caused by optical getting higher in the semiconductor manufacture. In order to enhance chip quality, optical proximity correction (OPC) plays an indispensable rule in the manufacture industry. However, OPC, includes model creation, correction, simulation and verification, is a bottleneck from design to manufacture due to the multiple iterations and advanced physical behavior description in math. Thus, this paper presented a pattern-based design technology co-optimization (PB-DTCO) flow in cooperation with OPC to find out patterns which will negatively affect the yield and fixed it automatically in advance to reduce the run-time in OPC operation. PB-DTCO flow can generate plenty of test patterns for model creation and yield gaining, classify candidate patterns systematically and furthermore build up bank includes pairs of match and optimization patterns quickly. Those banks can be used for hotspot fixing, layout optimization and also be referenced for the next technology node. Therefore, the combination of PB-DTCO flow with OPC not only benefits for reducing the time-to-market but also flexible and can be easily adapted to diversity OPC flow.

Multilocus phylogeography and population structure of common eiders breeding in North America and Scandinavia

USGS Publications Warehouse

Sonsthagen, Sarah A.; Talbot, Sandra L.; Scribner, Kim T.; McCracken, Kevin G.

2011-01-01

Aim  Glacial refugia during the Pleistocene had major impacts on the levels and spatial apportionment of genetic diversity of species in northern latitude ecosystems. We characterized patterns of population subdivision, and tested hypotheses associated with locations of potential Pleistocene refugia and the relative contribution of these refugia to the post-glacial colonization of North America and Scandinavia by common eiders (Somateria mollissima). Specifically, we evaluated localities hypothesized as ice-free areas or glacial refugia for other Arctic vertebrates, including Beringia, the High Arctic Canadian Archipelago, Newfoundland Bank, Spitsbergen Bank and north-west Norway.Location  Alaska, Canada, Norway and Sweden.Methods  Molecular data from 12 microsatellite loci, the mitochondrial DNA (mtDNA) control region, and two nuclear introns were collected and analysed for 15 populations of common eiders (n = 716) breeding throughout North America and Scandinavia. Population genetic structure, historical population fluctuations and gene flow were inferred using F-statistics, analyses of molecular variance, and multilocus coalescent analyses.Results  Significant inter-population variation in allelic and haplotypic frequencies were observed (nuclear DNA FST = 0.004–0.290; mtDNA ΦST = 0.051–0.927). Whereas spatial differentiation in nuclear genes was concordant with subspecific designations, geographic proximity was more predictive of inter-population variance in mitochondrial DNA haplotype frequency. Inferences of historical population demography were consistent with restriction of common eiders to four geographic areas during the Last Glacial Maximum: Belcher Islands, Newfoundland Bank, northern Alaska and Svalbard. Three of these areas coincide with previously identified glacial refugia: Newfoundland Bank, Beringia and Spitsbergen Bank. Gene-flow and clustering analyses indicated that the Beringian refugium contributed little to common eider post-glacial colonization of North America, whereas Canadian, Scandinavian and southern Alaskan post-glacial colonization is likely to have occurred in a stepwise fashion from the same glacial refugium.Main conclusions  Concordance of proposed glacial refugia used by common eiders and other Arctic species indicates that Arctic and subarctic refugia were important reservoirs of genetic diversity during the Pleistocene. Furthermore, suture zones identified at MacKenzie River, western Alaska/Aleutians and Scandinavia coincide with those identified for other Arctic vertebrates, suggesting that these regions were strong geographic barriers limiting dispersal from Pleistocene refugia.

Bank Erosion, Mass Wasting, Water Clarity, Bathymetry and a Sediment Budget Along the Dam-Regulated Lower Roanoke River, North Carolina

USGS Publications Warehouse

Schenk, Edward R.; Hupp, Cliff R.; Richter, Jean M.; Kroes, Daniel E.

2010-01-01

Dam construction and its impact on downstream fluvial processes may substantially alter ambient bank stability, floodplain inundation patterns, and channel morphology. Most of the world's largest rivers have been dammed, which has prompted management efforts to mitigate dam effects. Three high dams (completed between 1953 and 1963) occur along the Piedmont portion of the Roanoke River, North Carolina; just downstream, the lower part of the river flows across largely unconsolidated Coastal Plain deposits. To document bank erosion rates along the lower Roanoke River, more than 700 bank erosion pins were installed along 124 bank transects. Additionally, discrete measurements of channel bathymetry, water clarity, and presence or absence of mass wasting were documented along the entire 153-kilometer-long study reach. Amounts of bank erosion in combination with prior estimates of floodplain deposition were used to develop a bank erosion and floodplain deposition sediment budget for the lower river. Present bank erosion rates are relatively high [mean 42 milimeters per year (mm/yr)] and are greatest along the middle reaches (mean 60 mm/yr) and on lower parts of the bank on all reaches. Erosion rates were likely higher along upstream reaches than present erosion rates such that erosion rate maxima have migrated downstream. Mass wasting and water clarity also peak along the middle reaches.

Holocene aggradation of the Dry Tortugas coral reef ecosystem

USGS Publications Warehouse

Brock, J.C.; Palaseanu-Lovejoy, M.; Poore, R.Z.; Nayegandhi, A.; Wright, C.W.

2010-01-01

Radiometric age dating of reef cores acquired at the Dry Tortugas coral reef ecosystem (DTCRE) was merged with lidar topographic mapping to examine Holocene reef development linked to spatial variation in growth and erosion under the control of sea level. Analysis of variance of lidar topography confirmed the presence of three distinct terraces on all three major DTCRE banks (Loggerhead Bank, Garden Bank, and Pulaski Bank). Reef building on the middle terrace (T2) began atop Pleistocene edifices on Loggerhead Bank by 8.0 ka (thousands of years ago) and on Garden Bank by 7.2 ka at elevations of about −16.0 m and −11.9 m, respectively, relative to present mean sea level. Following this initiation at different elevations, T2 aggraded vertically on both banks at different rates during the early Holocene under foundering conditions until a highstand at 5.2 ka, resulting in a 2.21 m offset in present mean T2 elevation between these banks. Initiation of an upper terrace (T1) occurred on both Loggerhead Bank and Garden Bank in association with sea-level fall to a lowstand at near 4.8 ka. This upper terrace initiated on Garden Bank at about 5.0 ka and then grew upward at rate of 2.5 mm year−1 until approximately 3.8 ka. On Loggerhead Bank, the upper T1 terrace formed after 4.5 ka at a higher vertical aggradation rate of 4.1 mm year−1, but at a lower elevation than on Garden Bank. Terrace T1 aggraded on Loggerhead Bank below the elevation of lowstands during late Holocene sea-level oscillation, and consequently erosion on Loggerhead Bank was minimal and likely limited to the crest of the upper terrace. In contrast, after 3.8 ka terrace T1 on Garden Bank likely tracked sea level and consequently underwent erosion when sea level fell to second, third and fourth lowstands at 3.3, 1.1, and 0.3 ka.

Diel and spatial patterns in the singing behavior of humpback whales off Oahu, Hawaii

NASA Astrophysics Data System (ADS)

Lammers, Marc O.; Stimpert, Alison K.; Au, Whitlow W. L.; Mooney, T. Aran

2005-09-01

The singing behavior of male humpback whales on the winter breeding grounds is still a poorly understood phenomenon. Previous work indicates that the chorusing levels of singing whales off west Maui are higher at night than during the day. However, the cause of this variation is not known. To investigate whether more whales sing at night or whether the same number simply move closer to near-shore recorders following sunset, the abundance and location of singing whales off Kaena Point, Oahu was examined. A bottom-moored recording system was used to establish that the same diel pattern observed off Maui also occurs off Oahu. The location of singing whales was determined by localizing singers along a preset transect track using a towed hydrophone array. More whales were found singing along the coastline examined at night than during the day. There was no indication of a shoreward migration. These results suggest that, at night, singing displays may be a more effective behavioral tactic than direct competition in a pod. Also, more singers were found along the northern part of the coastline, which is dominated by a shallow bank, indicating that singers were selective with respect to where they chose to sing.

Variation of phytoplankton assemblages along the Mozambique coast as revealed by HPLC and microscopy

NASA Astrophysics Data System (ADS)

Sá, C.; Leal, M. C.; Silva, A.; Nordez, S.; André, E.; Paula, J.; Brotas, V.

2013-05-01

This study is an integrated overview of pigment and microscopic analysis of phytoplankton communities throughout the Mozambican coast. Collected samples revealed notable patterns of phytoplankton occurrence and distribution, with community structure changing between regions and sample depth. Pigment data showed Delagoa Bight, Sofala Bank and Angoche as the most productive regions throughout the sampled area. In general, micro-sized phytoplankton, particularly diatoms, were important contributors to biomass both at surface and sub-surface maximum (SSM) samples, although were almost absent in the northern stations. In contrast, nano- and pico-sized phytoplankton revealed opposing patterns. Picophytoplankton were most abundant at surface, as opposed to nanophytoplankton, which were more abundant at the SSM. Microphytoplankton were associated with cooler southern water masses, while picophytoplankton were related to warmer northern water masses. Nanophytoplankton were found to increase their contribution to biomass with increasing SSM. Microscopy information on the genera and species level revealed the diatoms Chaetoceros spp., Proboscia alata, Pseudo-nitzschia spp., Cylindrotheca closterium and Hemiaulus haukii as the most abundant taxa of the micro-sized phytoplankton. Discosphaera tubifera and Emiliania huxleyi were the most abundant coccolithophores, nano-sized phytoplankton.

Application of short-range photogrammetry for monitoring seepage erosion of riverbank by laboratory experiments

NASA Astrophysics Data System (ADS)

Masoodi, A.; Noorzad, A.; Majdzadeh Tabatabai, M. R.; Samadi, A.

2018-03-01

Temporal and spatial monitoring play a significant role in evaluating and examining the riverbank morphology and its spatiotemporal changes. Unlike the terrestrial laser scanners, other previously used methods such as satellite images, total station surveying, and erosion pins have limited application to quantify the small-scale bank variations due to the lack of rapid survey and resolution in data acquisition. High cost, lack of availability, specialized equipment and hard movement of laser scanners make it necessary to develop new accurate, economical and easily available methods. The present study aims to test the Kinect photogrametric technology for measuring and assessing riverbank variations in laboratory environment. For this purpose, three models of layered soil blocks for three different levels of groundwater (i.e. 24, 34 and 44 cm) were designed to investigate the seepage erosion behavior experimentally. The results indicate the high accuracy of Kinect in measuring the bank erosion cavity dimensions (i.e., 0.5% error) with high spatial resolution data (i.e. 300,000 points per frame). The high speed of Kinect in riverbank scanning enables the analysis of time variations of mechanisms such as seepage erosion which occurs rather rapidly. The results confirmed that there is a power relationship between the seepage gradient and the time of the bank failure with a determination coefficient of 0.97. Moreover, an increase in the level of groundwater on the riverbank increases the rate of undercutting retreat that caused more rapid failure of the riverbank.

The dynamics of mercury near Idrija mercury mine, Slovenia: Horizontal and vertical distributions of total, methyl, and ethyl mercury concentrations in soils.

PubMed

Tomiyasu, Takashi; Kodamatani, Hitoshi; Imura, Ryusuke; Matsuyama, Akito; Miyamoto, Junko; Akagi, Hirokatsu; Kocman, David; Kotnik, Jože; Fajon, Vesna; Horvat, Milena

2017-10-01

The distributions of the total mercury (T-Hg), methylmercury (MeHg), and ethylmercury (EtHg) concentrations in soil and their relationship to chemical composition of the soil and total organic carbon content (TOC, %) were investigated. Core samples were collected from hill slope on the right and left riverbanks of the Idrija River. Former smelting plant is located on the right bank. The T-Hg average in each of the core samples ranged from 0.25 to 1650 mg kg -1 . The vertical T-Hg variations in the samples from the left bank showed no significant change with depth. Conversely, the T-Hg varied with depth, with the surface, or layers several centimeters from the surface, tending to show the highest values in the samples from the right bank. Since the right and left bank soils have different chemical compositions, different pathways of mercury delivery into soils were suggested. The MeHg and EtHg concentrations ranged from n.d. (not detected) to 444 μg kg -1 and n.d. to 17.4 μg kg -1 , respectively. The vertical variations of MeHg and EtHg were similar to those of TOC, except for the near-surface layers containing TOC greater than 20%. These results suggest that the decomposition of organic matter is closely related to organic mercury formation. Copyright © 2017 Elsevier Ltd. All rights reserved.

River banks and channel axis curvature: Effects on the longitudinal dispersion in alluvial rivers

NASA Astrophysics Data System (ADS)

Lanzoni, Stefano; Ferdousi, Amena; Tambroni, Nicoletta

2018-03-01

The fate and transport of soluble contaminants released in natural streams are strongly dependent on the spatial variations of the flow field and of the bed topography. These variations are essentially related to the presence of the channel banks and to the planform configuration of the channel. Large velocity gradients arise near to the channel banks, where the flow depth decreases to zero. Moreover, single thread alluvial rivers are seldom straight, and usually exhibit meandering planforms and a bed topography that deviates from the plane configuration. Channel axis curvature and movable bed deformations drive secondary helical currents which enhance both cross sectional velocity gradients and transverse mixing, thus crucially influencing longitudinal dispersion. The present contribution sets up a rational framework which, assuming mild sloping banks and taking advantage of the weakly meandering character often exhibited by natural streams, leads to an analytical estimate of the contribution to longitudinal dispersion associated with spatial non-uniformities of the flow field. The resulting relationship stems from a physics-based modeling of the flow in natural rivers, and expresses the bend averaged longitudinal dispersion coefficient as a function of the relevant hydraulic and morphologic parameters. The treatment of the problem is river specific, since it relies on an explicit spatial description, although linearized, of the flow field that establishes in the investigated river. Comparison with field data available from tracer tests supports the robustness of the proposed framework, given also the complexity of the processes that affect dispersion dynamics in real streams.

Sediment movement and dispersal patterns on the Grand Banks continental shelf and slope were tied to the dynamics of the Laurentide ice-sheet margin

NASA Astrophysics Data System (ADS)

Rashid, H.; MacKillop, K.; Piper, D.; Vermooten, M.; Higgins, J.; Marche, B.; Langer, K.; Brockway, B.; Spicer, H. E.; Webb, M. D.; Fournier, E.

2015-12-01

The expansion and contraction of the late Pleistocene Laurentide ice-sheet (LIS) was the crucial determining factor for the geomorphic features and shelf and slope sediment mobility on the eastern Canadian continental margin, with abundant mass-transport deposits (MTDs) seaward of ice margins on the upper slope. Here, we report for the first time sediment failure and mass-transport deposits from the central Grand Banks slope in the Salar and Carson petroleum basins. High-resolution seismic profiles and multibeam bathymetry show numerous sediment failure scarps in 500-1600 m water depth. There is no evidence for an ice margin on the upper slope younger than MIS 6. Centimeter-scale X-ray fluorescence analysis (XRF), grain size, and oxygen isotope data from piston cores constrain sediment processes over the past 46 ka. Geotechnical measurements including Atterberg limit tests, vane shear measurements and triaxial and multi-stage isotropic consolidation tests allowed us to assess the instability on the continental margin. Cores with continuous undisturbed stratigraphy in contourite silty muds show normal downcore increase in bulk density and undrained peak shear strength. Heinrich (H) layers are identifiable by a marked increase in the bulk density, high Ca (ppm), increase in iceberg-rafted debris and lighter δ18O in the polar planktonic foram Neogloboquadrina pachyderma (sinistral): with a few C-14 dates they provide a robust chronology. There is no evidence for significant supply of sediment from the Grand Banks at the last-glacial maximum. Mass-transport deposits (MTD) are marked by variability in the bulk density, undrained shear strength and little variation in bulk density or Ca (ppm) values. The MTD are older than 46 ka on the central Grand Banks slope, whereas younger MTDs are present in southern Flemish Pass. Factor of safety calculations suggest the slope is statically stable up to gradients of 10°, but more intervals of silty mud may fail during earthquake-induced cyclic loading based on Atterberg tests. By analogy with the Holocene, contourites deposited in MIS 5e may be particularly silty and form a "weak layer" susceptible to failure.

Seed bank dynamics of blowout penstemon in relation to local patterns of sand movement on the Ferris Dunes, south-central Wyoming

Treesearch

Kassie L. Tilini; Susan E. Meyer; Phil S. Allen

2017-01-01

Plants restricted to active sand dunes possess traits that enable both survival in a harsh environment and local migration in response to a shifting habitat mosaic. We examined seed bank dynamics of Penstemon haydenii S. Watson (blowout penstemon) in relation to local sand movement. We measured within-year sand movement along a 400 m transect and examined plant density...

Energy Transfer to Upper Trophic Levels on a Small Offshore Bank

DTIC Science & Technology

2009-09-30

Observations from Platts Bank and other feeding hotspots in the Gulf of Maine show that high levels of feeding activity are ephemeral—sometimes...feeding hotspots in the Gulf of Maine show that high levels of feeding activity are ephemeral?sometimes very active, often not. Differences can exist...defining patterns of biodiversity in the oceans and the processes that shape them. The Gulf of Maine program has the additional aim of describing how

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data.

PubMed

Blekhman, Ran; Tang, Karen; Archie, Elizabeth A; Barreiro, Luis B; Johnson, Zachary P; Wilson, Mark E; Kohn, Jordan; Yuan, Michael L; Gesquiere, Laurence; Grieneisen, Laura E; Tung, Jenny

2016-08-16

Field studies of wild vertebrates are frequently associated with extensive collections of banked fecal samples-unique resources for understanding ecological, behavioral, and phylogenetic effects on the gut microbiome. However, we do not understand whether sample storage methods confound the ability to investigate interindividual variation in gut microbiome profiles. Here, we extend previous work on storage methods for gut microbiome samples by comparing immediate freezing, the gold standard of preservation, to three methods commonly used in vertebrate field studies: lyophilization, storage in ethanol, and storage in RNAlater. We found that the signature of individual identity consistently outweighed storage effects: alpha diversity and beta diversity measures were significantly correlated across methods, and while samples often clustered by donor, they never clustered by storage method. Provided that all analyzed samples are stored the same way, banked fecal samples therefore appear highly suitable for investigating variation in gut microbiota. Our results open the door to a much-expanded perspective on variation in the gut microbiome across species and ecological contexts.

Unravelling variation in feeding, social interaction and growth patterns among pigs using an agent-based model.

PubMed

Boumans, Iris J M M; de Boer, Imke J M; Hofstede, Gert Jan; Bokkers, Eddie A M

2018-07-01

Domesticated pigs, Sus scrofa, vary considerably in feeding, social interaction and growth patterns. This variation originates partly from genetic variation that affects physiological factors and partly from behavioural strategies (avoid or approach) in competitive food resource situations. Currently, it is unknown how variation in physiological factors and in behavioural strategies among animals contributes to variation in feeding, social interaction and growth patterns in animals. The aim of this study was to unravel causation of variation in these patterns among pigs. We used an agent-based model to explore the effects of physiological factors and behavioural strategies in pigs on variation in feeding, social interaction and growth patterns. Model results show that variation in feeding, social interaction and growth patterns are caused partly by chance, such as time effects and coincidence of conflicts. Furthermore, results show that seemingly contradictory empirical findings in literature can be explained by variation in pig characteristics (i.e. growth potential, positive feedback, dominance, and coping style). Growth potential mainly affected feeding and growth patterns, whereas positive feedback, dominance and coping style affected feeding patterns, social interaction patterns, as well as growth patterns. Variation in behavioural strategies among pigs can reduce aggression at group level, but also make some pigs more susceptible to social constraints inhibiting them from feeding when they want to, especially low-ranking pigs and pigs with a passive coping style. Variation in feeding patterns, such as feeding rate or meal frequency, can indicate social constraints. Feeding patterns, however, can say something different about social constraints at group versus individual level. A combination of feeding patterns, such as a decreased feed intake, an increased feeding rate, and an increased meal frequency might, therefore, be needed to measure social constraints at individual level. Copyright © 2018 Elsevier Inc. All rights reserved.

Understanding Single-Thread Meandering Rivers with High Sinuosity on Mars through Chemical Precipitation Experiments

NASA Astrophysics Data System (ADS)

Lim, Y.; Kim, W.

2015-12-01

Meandering rivers are extremely ubiquitous on Earth, yet it is only recently that single-thread experimental channels with low sinuosity have been created. In these recent experiments, as well as in natural rivers, vegetation plays a crucial role in maintaining a meandering pattern by adding cohesion to the bank and inhibiting erosion. The ancient, highly sinuous channels found on Mars are enigmatic because presumably vegetation did not exist on ancient Mars. Under the hypothesis that Martian meandering rivers formed by chemical precipitation on levees and flood plain deposits, we conducted carbonate flume experiments to investigate the formation and evolution of a single-thread meander pattern without vegetation. The flow recirculating in the flume is designed to accelerate chemical reactions - dissolution of limestone using CO2 gas to produce artificial spring water and precipitation of carbonates to increase cohesion- with precise control of water discharge, sediment discharge, and temperature. Preliminary experiments successfully created a single-thread meandering pattern through chemical processes. Carbonate deposits focused along the channel sides improved the bank stability and made them resistant to erosion, which led to a stream confined in a narrow path. The experimental channels showed lateral migration of the bend through cut bank and point bar deposits; intermittent floods created overbank flow and encouraged cut bank erosion, which enhanced lateral migration of the channel, while increase in sediment supply improved lateral point bar deposition, which balanced erosion and deposition rates. This mechanism may be applied to terrestrial single-thread and/or meandering rivers with little to no vegetation or before its introduction to Earth and also provide the link between meandering river records on Mars to changes in Martian surface conditions.

Roberts Bank: Ecological crucible of the Fraser River estuary

NASA Astrophysics Data System (ADS)

Sutherland, Terri F.; Elner, Robert W.; O'Neill, Jennifer D.

2013-08-01

Roberts Bank, part of the Fraser River delta system on Canada's Pacific coast, is a dynamic estuarine environment supporting important fisheries as well as internationally significant populations of migratory shorebirds. The 8000 ha bank environment comprises a complex of riparian boundaries, intertidal marshes, mud and sand flats, eelgrass meadows, macroalgae and biofilms. Anthropogenic developments (a ferry causeway in 1961 and a port causeway in 1969) have been responsible for changes in tidal flow patterns, tidal elevation, sediment transport and the net expansion of eelgrass beds. The goals of the present study were to (1) directly compare geotechnical properties spanning each side of the coalport causeway, and (2) enhance our understanding of the intercauseway ecosystem under a high-resolution sampling design. Sediment properties (grain size, porosity, organic content, and chlorophyll) and biological communities (eelgrass, macrofauna (0.5-1.0 mm) and meiofauna (0.063-0.5 mm)) were surveyed in 1997 at three stations outside the intercauseway area and three lateral transects spanning the intercauseway tidal flat at tidal heights representing three different habitats: biofilm, Zostera japonica, and Zostera marina. A fine-silt organic-rich porous deposit was observed on the shoreward north side of the coalport causeway relative to the south counterpart, suggesting that consolidation and erosion processes could likely not keep pace with the deposition of Fraser River silt. High chlorophyll levels were found in the protected shoreward northern border of the ferry causeway where fine sands dominate and higher water transparency exists, owing to the redirection of the silt-laden river plume by the coalport causeway. Principle Components Analysis revealed a positive relationship between these porous, organic-rich sediments and cumacean abundance in all regions where eelgrass was absent, including the north side of the coalport causeway. Further, a positive relationship was found between biofilm components (chlorophyll and silt), polydora, and harpacticoid copepod abundance, which, together with cumaceans, are food for Western Sandpipers, Calidris mauri. Finally, 52% of the intercauseway variation was explained by direct correlations between eelgrass attributes and fauna consisting of bivalves, caprellids, and harpacticoid copepods (root biomass, leaf area index), the latter being prey for juvenile salmon which depend on eelgrass beds as rearing habitat. These habitats are vulnerable to changes in tidal flow patterns, tidal elevation, sediment transport, and water clarity that could be caused by future port development and/or sea level rise in response to climate change.

Perisylvian sulcal morphology and cerebral asymmetry patterns in adults who stutter.

PubMed

Cykowski, Matthew D; Kochunov, Peter V; Ingham, Roger J; Ingham, Janis C; Mangin, Jean-François; Rivière, Denis; Lancaster, Jack L; Fox, Peter T

2008-03-01

Previous investigations of cerebral anatomy in persistent developmental stutterers have reported bilateral anomalies in the perisylvian region and atypical patterns of cerebral asymmetry. In this study, perisylvian sulcal patterns were analyzed to compare subjects with persistent developmental stuttering (PDS) and an age-, hand-, and gender-matched control group. This analysis was accomplished using software designed for 3-dimensional sulcal identification and extraction. Patterns of cerebral asymmetry were also investigated with standard planimetric measurements. PDS subjects showed a small but significant increase in both the number of sulci connecting with the second segment of the right Sylvian fissure and in the number of suprasylvian gyral banks (of sulci) along this segment. No differences were seen in the left perisylvian region for either sulcal number or gyral bank number. Measurements of asymmetry revealed typical patterns of cerebral asymmetry in both groups with no significant differences in frontal and occipital width asymmetry, frontal and occipital pole asymmetry, or planum temporale and Sylvian fissure asymmetries. The subtle difference in cortical folding of the right perisylvian region observed in PDS subjects may correlate with functional imaging studies that have reported increased right-hemisphere activity during stuttered speech.

Modification of smoothing in 4253H[T

NASA Astrophysics Data System (ADS)

Azmi, Nurul Nisa'Khairol; Adam, Mohd Bakri; Shitan, Mahendran; Ali, Norhaslinda Mohd

2017-05-01

Some modified non-linear smoothers particularly 4253H[T] are explained in this paper. The modifications are focused on estimating the middle point of running median for even span by applying the following types of means; geometric, harmonic, quadratic and contraharmonic. The performance of the techniques is assessed by applying it to daily price index of a bank in Malaysia that issues sukuk for funding in Islamic banking and financial business. The results show that 4253H[T] with geometric mean modification is better than others in preserving variation and curve fitting.

The Economic Relationship between Institutions of Higher Education and Their Local Communities.

ERIC Educational Resources Information Center

Fink, Ira

1980-01-01

Aspects of the economic impact of colleges and universities on the communities in which they are located are examined. These include revenue sources, cash flow, local expenditures, banking, municipal services, taxes, alteration of neighborhoods, enrollment patterns, employment patterns and needs, housing, lifestyles, and gains in human capital.…

What makes Stellwagen Bank a whale feeding ground?

NASA Astrophysics Data System (ADS)

Zhai, X.; Flierl, G.; Lermusiaux, P. F. J.; Haley, P. J., Jr.; McCarthy, J. J.

2016-12-01

Stellwagen Bank lies at the Massachusetts Bay's eastern boundary with the Gulf of Maine (GoM) and is encompassed by the Gerry E. Studds Stellwagen Bank National Marine Sanctuary. It is a shoal with primarily sandy bottom and with water depth ranging from 20 meters to 40 meters. All across the Bank these waters are highly productive and support a large and diverse planktonic community and benthic community, a large fish diversity and fish biomass, and it is one of the most active whale feeding grounds in coastal waters of the United States makes. According to previous studies, several factors may contribute to the high biomass over sea banks and sea mounts, such as local enhancement due to high dissolved inorganic nitrogen (DIN = NH4 + NO3) and subsequent retention of productivity, plus the advection and local concentration of food produced elsewhere. In this research, the biological and physical processes which can cause the biomass patterns and accumulations over the Stellwagen Bank and its vicinity are investigated separately and together, using a 3D model which has been built in the MSEAS (Multidisciplinary simulation, estimation, and assimilation system) and a simple 2D cross-bank profile model. The study is focused on figuring out which are the dominant factors and processes that contribute to the abundant food in the Stellwagen Bank ecosystem and are responsible for sustaining the large biomass over the Bank, and how local or regional changes in climate and circulation might affect the food availability in this important whale feeding ground. The 2D model result shows that zooplankton diel migration can significantly affect the biological biomass and DIN concentration over the Bank. Both the 2D and 3D models show that upwelling induced by the Bank topography play an important role in nutrient and biomass enhancement.

Spatial and annual variation in fecundity and oocyte atresia of yellowtail flounder, Limanda ferruginea, in U.S. waters

NASA Astrophysics Data System (ADS)

McElroy, W. David; Wuenschel, Mark J.; Towle, Emilee K.; McBride, Richard S.

2016-01-01

Potential annual fecundity (PAF) was estimated over three years (2010-2012) for yellowtail flounder with individuals from the three stocks off the northeast U.S. coast. Down-regulation of PAF, the resorption of oocytes during development, was evident as the vitellogenic cohort advanced, so we directly measured atresia of vitellogenic oocytes using stereological techniques. PAF models including relative fish condition, stock area, year, and oocyte diameter of the leading cohort explained more variation than models with just size alone based on Akaike information criteria. In a given year, Gulf of Maine females had lower PAF at size than southern New England females. Interannual differences were evident: PAF of both stocks was higher in 2010 and lower in 2012, with 2011 showing less synchronization between these stocks. Differences in size at age and relative condition suggested that energy available for somatic and reproductive growth was lower in some years in the Gulf of Maine and Georges Bank, especially in 2011. Georges Bank PAF and condition were intermediate to the other stocks or more similar to the Gulf of Maine, varying annually. A latitudinal gradient in PAF is evident based on our results and relative to earlier studies that included Canadian stocks. The magnitude of down-regulation was variable across stocks and typically 3-25% of PAF. This can be accounted for in fecundity estimates, by the seasonal schedule of sampling and use of an oocyte diameter term in the fecundity model. Theoretical models of atresia patterns suggested variable rates over the later portion of clutch development. The timing of down-regulation varied among years, and its intensity was influenced by female relative condition. Fecundity was related to fish size, but was also affected by fish condition and oocyte diameter (a proxy for time until spawning), and spatial and temporal effects. A longer time series of PAF may identify environmental drivers that modulate annual stock reproductive potential.

Response of Peat-forming Ecosystems of the Western Antarctic Peninsula to Recent Climate Change

NASA Astrophysics Data System (ADS)

Tardona, M.; Beilman, D.; Yu, Z.; Loisel, J.

2014-12-01

Amplified warming and related environmental changes in the high latitudes have a complex geographic pattern, with the Western Antarctic Peninsula experiencing one of the fastest rates of recent warming globally. To better understand the response of terrestrial Antarctic ecosystems to polar change, we applied a paleoscience approach to organic soil profiles from 13 aerobic peatbank ecosystems on 7 islands along the peninsula from 67.6 to 64.2°S. Peatbank ecosystem ages were obtained by Radiocarbon measurements of organic matter from the base of these profiles and cluster in three groups: older than 1000 years old (as old as 2750 years old), 400-500 years old, and younger than 65 years with fixed bomb-spike carbon. Three of these peatbank profiles were studied in detail, and show growth rates over the last 65 years of ~2.5 mm yr-1. This rate is faster than those observed during previous periods but is similar to other recent nearby studies that report recent growth rates of ~2.6 mm yr-1. Organic carbon storage ranged from 6.1 to 21.3 kgC m-2. Values of moss bank organic matter δ13C show progressively more depleted δ13C values; in which depletion increases 3.0‰ over recent decades. Overall increase in source-independent discrimination is 1.7‰, consistent with published records from other locations and an increase in photosynthetic activity at the regional scale. Source-independent discrimination displays substantial variations corresponding negatively to variation of organic matter C:N values. Our results imply several recent changes in Antarctic peat forming ecosystem processes including formation of new moss banks, increased accumulation rates, and high variability in source-independent discrimination. These changes are complex but affected by contemporary climate changes of the region including increasing temperatures over the past century.

Geomorphic processes active in the Southwestern Louisiana Canal, Lafourche Parish, Louisiana

NASA Technical Reports Server (NTRS)

Doiron, L. N.; Whitehurst, C. A.

1974-01-01

The geomorphological changes causing the destruction of the banks of the Southwestern Louisiana Canal are studied by means of field work, laboratory analyses, and infrared color imagery interpretation. Turbulence and flow patterns are mapped, and related to erosion and sediment deposition processes. The accelerated erosion rate of the last decade is discussed, with two causative factors cited: (1) development of faster boats, increasing bank and bottom erosion, and (2) a subsequently larger tidal influx, with greater erosive ability. The physical properties of the canal bank materials are also analyzed. It is concluded that channel erosion progressively increases, with no indications of stabilization, until they merge with other waterways and become indistinguishable from natural water bodies.

Decadal Changes in Zooplankton of the Northeast U.S. Continental Shelf

PubMed Central

Bi, Hongsheng; Ji, Rubao; Liu, Hui; Jo, Young-Heon; Hare, Jonathan A.

2014-01-01

The abundance of the subarctic copepod, Calanus finmarchicus, and temperate, shelf copepod, Centropages typicus, was estimated from samples collected bi-monthly over the Northeast U.S. continental shelf (NEUS) from 1977–2010. Latitudinal variation in long term trends and seasonal patterns for the two copepod species were examined for four sub-regions: the Gulf of Maine (GOM), Georges Bank (GB), Southern New England (SNE), and Mid-Atlantic Bight (MAB). Results suggested that there was significant difference in long term variation between northern region (GOM and GB), and the MAB for both species. C. finmarchicus generally peaked in May – June throughout the entire study region and Cen. typicus had a more complex seasonal pattern. Time series analysis revealed that the peak time for Cen. typicus switched from November – December to January - March after 1985 in the MAB. The long term abundance of C. finmarchicus showed more fluctuation in the MAB than the GOM and GB, whereas the long term abundance of Cen. typicus was more variable in the GB than other sub-regions. Alongshore transport was significantly correlated with the abundance of C. finmarchicus, i.e., more water from north, higher abundance for C. finmarchicus. The abundance of Cen. typicus showed positive relationship with the Gulf Stream north wall index (GSNWI) in the GOM and GB, but the GSNWI only explained 12–15% of variation in Cen. typicus abundance. In general, the alongshore current was negatively correlated with the GSNWI, suggesting that Cen. typicus is more abundant when advection from the north is less. However, the relationship between Cen. typicus and alongshore transport was not significant. The present study highlights the importance of spatial scales in the study of marine populations: observed long term changes in the northern region were different from the south for both species. PMID:24498177

12 CFR 229.37 - Variation by agreement.

Code of Federal Regulations, 2010 CFR

2010-01-01

... can disclaim the responsibility of a bank for its own lack of good faith or failure to exercise ordinary care, or can limit the measure of damages for such lack or failure; but the parties may determine...

Genetics Home Reference: Dupuytren contracture

MedlinePlus

... is the most common inherited disorder of connective tissue. The inheritance pattern is often unclear. Some people who inherit ... Data Bank for Rheumatic Diseases: Joining NDB Research for Dupuytren ...

Spatial variability of theaflavins and thearubigins fractions and their impact on black tea quality.

PubMed

Bhuyan, Lakshi Prasad; Borah, Paban; Sabhapondit, Santanu; Gogoi, Ramen; Bhattacharyya, Pradip

2015-12-01

The spatial distribution of theaflavin and thearubigin fractions and their impact on black tea quality were investigated using multivariate and geostatistics techniques. Black tea samples were collected from tea gardens of six geographical regions of Assam and West Bengal, India. Total theaflavin (TF) and its four fractions of upper Assam, south bank and North Bank teas were higher than the other regions. Simple theaflavin showed highest significant correlation with tasters' quality. Low molecular weight thearubigins of south bank and North Bank were significantly higher than other regions. Total thearubigin (TR) and its fractions revealed significant positive correlation with tasters' organoleptic valuations. Tea tasters' parameters were significantly and positively correlated with each other. The semivariogram for quality parameters were best represented by gaussian models. The nugget/sill ratio indicated a strong/moderate spatial dependence of the studied parameters. Spatial variation of tea quality parameters may be used for quality assessment in the tea growing areas of India.

LDMOS Channel Thermometer Based on a Thermal Resistance Sensor for Balancing Temperature in Monolithic Power ICs.

PubMed

Lin, Tingyou; Ho, Yingchieh; Su, Chauchin

2017-06-15

This paper presents a method of thermal balancing for monolithic power integrated circuits (ICs). An on-chip temperature monitoring sensor that consists of a poly resistor strip in each of multiple parallel MOSFET banks is developed. A temperature-to-frequency converter (TFC) is proposed to quantize on-chip temperature. A pulse-width-modulation (PWM) methodology is developed to balance the channel temperature based on the quantization. The modulated PWM pulses control the hottest of metal-oxide-semiconductor field-effect transistor (MOSFET) bank to reduce its power dissipation and heat generation. A test chip with eight parallel MOSFET banks is fabricated in TSMC 0.25 μm HV BCD processes, and total area is 900 × 914 μm². The maximal temperature variation among the eight banks can reduce to 2.8 °C by the proposed thermal balancing system from 9.5 °C with 1.5 W dissipation. As a result, our proposed system improves the lifetime of a power MOSFET by 20%.

LDMOS Channel Thermometer Based on a Thermal Resistance Sensor for Balancing Temperature in Monolithic Power ICs

PubMed Central

Lin, Tingyou; Ho, Yingchieh; Su, Chauchin

2017-01-01

This paper presents a method of thermal balancing for monolithic power integrated circuits (ICs). An on-chip temperature monitoring sensor that consists of a poly resistor strip in each of multiple parallel MOSFET banks is developed. A temperature-to-frequency converter (TFC) is proposed to quantize on-chip temperature. A pulse-width-modulation (PWM) methodology is developed to balance the channel temperature based on the quantization. The modulated PWM pulses control the hottest of metal-oxide-semiconductor field-effect transistor (MOSFET) bank to reduce its power dissipation and heat generation. A test chip with eight parallel MOSFET banks is fabricated in TSMC 0.25 μm HV BCD processes, and total area is 900 × 914 μm2. The maximal temperature variation among the eight banks can reduce to 2.8 °C by the proposed thermal balancing system from 9.5 °C with 1.5 W dissipation. As a result, our proposed system improves the lifetime of a power MOSFET by 20%. PMID:28617346

A historical legacy of antibiotic utilization on bacterial seed banks in sediments

PubMed Central

Junier, Thomas; Bayrychenko, Zhanna; Filippidou, Sevasti; Beck, Karin; Greub, Gilbert; Bürgmann, Helmut

2018-01-01

The introduction of antibiotics for both medical and non-medical purposes has had a positive effect on human welfare and agricultural output in the past century. However, there is also an important ecological legacy regarding the use of antibiotics and the consequences of increased levels of these compounds in the environment as a consequence of their use and disposal. This legacy was investigated by quantifying two antibiotic resistance genes (ARG) conferring resistance to tetracycline (tet(W)) and sulfonamide (sul1) in bacterial seed bank DNA in sediments. The industrial introduction of antibiotics caused an abrupt increase in the total abundance of tet(W) and a steady increase in sul1. The abrupt change in tet(W) corresponded to an increase in relative abundance from ca. 1960 that peaked around 1976. This pattern of accumulation was highly correlated with the abundance of specific members of the seed bank community belonging to the phylum Firmicutes. In contrast, the relative abundance of sul1 increased after 1976. This correlated with a taxonomically broad spectrum of bacteria, reflecting sul1 dissemination through horizontal gene transfer. The accumulation patterns of both ARGs correspond broadly to the temporal scale of medical antibiotic use. Our results show that the bacterial seed bank can be used to look back at the historical usage of antibiotics and resistance prevalence. PMID:29312823

Effects of 10-year management regimes on the soil seed bank in saline-alkaline grassland.

PubMed

Ma, Hongyuan; Yang, Haoyu; Liang, Zhengwei; Ooi, Mark K J

2015-01-01

Management regimes for vegetation restoration of degraded grasslands can significantly affect the process of ecological succession. However, few studies have focused on variation in the soil seed bank during vegetation restoration under different management regimes, especially in saline-alkaline grassland habitats. Our aim was to provide insights into the ecological effects of grassland management regimes on soil seed bank composition and vegetation establishment in mown, fenced, transplanted and natural grassland sites, all dominated by the perennial rhizomatous grass Leymus chinensis. We studied species composition and diversity in both the soil seed bank and aboveground vegetation in differently managed grasslands in Northeast China. An NMDS (nonmetric multidimensional scaling) was used to evaluate the relationship between species composition, soil seed banks, aboveground vegetation and soil properties. Fenced and mown grassland sites had high density and species richness in both the soil seed bank and aboveground vegetation. The Transplanted treatment exhibited the highest vegetation growth and seed production of the target species L. chinensis. Seeds of L. chinensis in the soil occurred only in transplanted and natural grassland. Based on the NMDS analysis, the number of species in both the soil seed bank and aboveground vegetation were significantly related to soil Na+, Cl-, RSC (residual sodium carbonate), alkalinity, ESP (exchangeable sodium percentage) and AP (available phosphorus). Soil seed bank composition and diversity in the saline-alkaline grassland were significantly affected by the management regimes implemented, and were also significantly related to the aboveground vegetation and several soil properties. Based on vegetative growth, reproductive output and maintenance of soil seed bank, the transplanting was identified as the most effective method for relatively rapid restoration of the target species L. chinensis. This approach could be beneficial for the restoration of dominant species in a wide range of degraded grassland ecosystems.

Interaction between stream temperature, streamflow, and groundwater exchanges in alpine streams

USGS Publications Warehouse

Constantz, James E.

1998-01-01

Four alpine streams were monitored to continuously collect stream temperature and streamflow for periods ranging from a week to a year. In a small stream in the Colorado Rockies, diurnal variations in both stream temperature and streamflow were significantly greater in losing reaches than in gaining reaches, with minimum streamflow losses occurring early in the day and maximum losses occurring early in the evening. Using measured stream temperature changes, diurnal streambed infiltration rates were predicted to increase as much as 35% during the day (based on a heat and water transport groundwater model), while the measured increase in streamflow loss was 40%. For two large streams in the Sierra Nevada Mountains, annual stream temperature variations ranged from 0° to 25°C. In summer months, diurnal stream temperature variations were 30–40% of annual stream temperature variations, owing to reduced streamflows and increased atmospheric heating. Previous reports document that one Sierra stream site generally gains groundwater during low flows, while the second Sierra stream site may lose water during low flows. For August the diurnal streamflow variation was 11% at the gaining stream site and 30% at the losing stream site. On the basis of measured diurnal stream temperature variations, streambed infiltration rates were predicted to vary diurnally as much as 20% at the losing stream site. Analysis of results suggests that evapotranspiration losses determined diurnal streamflow variations in the gaining reaches, while in the losing reaches, evapotranspiration losses were compounded by diurnal variations in streambed infiltration. Diurnal variations in stream temperature were reduced in the gaining reaches as a result of discharging groundwater of relatively constant temperature. For the Sierra sites, comparison of results with those from a small tributary demonstrated that stream temperature patterns were useful in delineating discharges of bank storage following dam releases. Direct coupling may have occurred between streamflow and stream temperature for losing stream reaches, such that reduced streamflows facilitated increased afternoon stream temperatures and increased afternoon stream temperatures induced increased streambed losses, leading to even greater increases in both stream temperature and streamflow losses.

Blood donor show behaviour after an invitation to donate: The influence of collection site factors.

PubMed

Merz, E-M; Zijlstra, B J H; de Kort, W L A M

2017-10-01

Show behaviour after invitation to donate varies considerably across donors. More insight into this variation is important for blood banks in achieving stable stocks. This study examined individual factors determining intended show behaviour. Most importantly, however, this study is the first study to account for variation in donor behaviour across different collection sites. We applied a multilevel approach to data from Donor InSight, including 11 889 donors from 257 fixed and mobile collection sites in the Netherlands. The aim of the multilevel models was to account for variance at two levels, that is donors and collection sites. We estimated the likelihood of showing after invitation based on individual predictors, including demographics, donation history and attitude. At the collection site level, we included satisfaction with the blood bank aggregated from individual responses by donors who donate at this site, opening hours and collection site type, that is fixed/mobile. Most importantly, show behaviour varied considerably across collection sites and depended on characteristics of these sites. Moreover, women, older and more experienced donors had higher odds of showing after invitation than men, younger and less experienced donors. Donors higher on warm glow, self-efficacy and donor identity more likely showed after an invitation. Higher aggregate satisfaction and donating at fixed collection sites increased the odds of show. In addition to individual factors, collection site characteristics are important in explaining variation in donor show behaviour, thus presenting clues for blood bank policies and interventions to improve donor show. © 2017 International Society of Blood Transfusion.

On the origins of Balkan endemics: the complex evolutionary history of the Cyanus napulifer group (Asteraceae).

PubMed

Olšavská, Katarína; Slovák, Marek; Marhold, Karol; Štubňová, Eliška; Kučera, Jaromír

2016-11-01

The Balkan Peninsula is one of the most important centres of plant diversity in Europe. Here we aim to fill the gap in the current knowledge of the evolutionary processes and factors modelling this astonishing biological richness by applying multiple approaches to the Cyanus napulifer group. To reconstruct the mode of diversification within the C. napulifer group and to uncover its relationships with potential relatives with x = 10 from Europe and Northern Africa, we examined variation in genetic markers (amplified fragment length polymorphisms [AFLPs]; 460 individuals), relative DNA content (4',6-diamidino-2-phenylindole [DAPI] flow cytometry, 330 individuals) and morphology (multivariate morphometrics, 40 morphological characters, 710 individuals). To elucidate its evolutionary history, we analysed chloroplast DNA (cpDNA) sequences of the genus Cyanus deposited in the GenBank database. The AFLPs revealed a suite of closely related entities with variable levels of differentiation. The C. napulifer group formed a genetically well-defined unit. Samples outside the group formed strongly diversified and mostly species-specific genetic lineages with no further geographical patterns, often characterized also by a different DNA content. AFLP analysis of the C. napulifer group revealed extensive radiation and split it into nine allopatric (sub)lineages with varying degrees of congruence among genetic, DNA-content and morphological patterns. Genetic admixture was usually detected in contact zones between genetic lineages. Plastid data indicated extensive maintenance of ancestral variation across Cyanus perennials. The C. napulifer group is an example of a rapidly and recently diversified plant group whose genetic lineages have evolved in spatio-temporal isolation on the topographically complex Balkan Peninsula. Adaptive radiation, accompanied in some cases by long-term isolation and hybridization, has contributed to the formation of this species complex and its mosaic pattern. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Flexible colour patterns obscure identification and mimicry in Indo-Pacific Chromodoris nudibranchs (Gastropoda: Chromodorididae).

PubMed

Layton, Kara K S; Gosliner, Terrence M; Wilson, Nerida G

2018-07-01

Chromodoris is a genus of colourful nudibranchs that feed on sponges and is found across the Indo-Pacific. While this was once the most diverse chromodorid genus, recent work has shown that the genus should be restricted to a monophyletic lineage that contains only 22 species, all of which exhibit black pigmentation and planar spawning behaviour. Earlier phylogenies of this group are poorly resolved and thus additional work is needed to clarify species boundaries within Chromodoris. This study presents a maximum-likelihood phylogeny based on mitochondrial loci (COI, 16S) for 345 Chromodoris specimens, including data from 323 new specimens and 22 from GenBank, from across the Indo-Pacific. Species hypotheses and phylogenetic analysis uncovered 39 taxa in total containing 18 undescribed species, with only five of 39 taxa showing stable colour patterns and distinct morphotypes. This study also presents the first evidence for regional mimicry in this genus, with C. colemani and C. joshi displaying geographically-based variation in colour patterns which appear to match locally abundant congenerics, highlighting the flexibility of these colour patterns in Chromodoris nudibranchs. The current phylogeny contains short branch lengths, polytomies and poor support at interior nodes, which is indicative of a recent radiation. As such, future work will employ a transcriptome-based exon capture approach for resolving the phylogeny of this group. In all, this study included 21 of the 22 described species in the Chromodoris sensu stricto group with broad sampling coverage from across the Indo-Pacific, constituting the most comprehensive sampling of this group to date. This work highlights several cases of undocumented diversity, ultimately expanding our knowledge of species boundaries in this group, while also demonstrating the limitations of colour patterns for species identification in this genus. Copyright © 2018 Elsevier Inc. All rights reserved.

Patterns of chlorophyll-a distribution linked to mesoscale structures in two contrasting areas Campeche Canyon and Bank, Southern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Durán-Campos, Elizabeth; Salas-de-León, David Alberto; Monreal-Gómez, María Adela; Coria-Monter, Erik

2017-05-01

The chlorophyll-a (Chl-a) distribution in Campeche Canyon and Campeche Bank, at the Southern Gulf of Mexico, as well as its relationship with hydrographic structure were analyzed. The results show the existence of the Gulf Common Water (GCW), the Caribbean Tropical Surface Water (CTSW) and the Caribbean Subtropical Underwater (CSUW) in the 120 m upper layer at the Campeche Canyon. While at the Campeche Bank only the Caribbean Tropical Surface Water (CTSW) was found. The 15 °C and 18.5 °C isotherms topography depict the presence of a mesoscale anticyclone-cyclone dipole. The nutrient pumping mechanism fertilizes the eutrophic zone promoted by the cyclonic eddy. Submesoscale processes in the border of an anticyclone and a cyclone results in maximum of nitrate concentration and vertically integrated Chl-a at the frontal zone. Two Chl-a vertical distribution patterns were found, a deep maximum at the base of the euphotic layer not associated to the thermocline over the Campeche Canyon and a peak associated to the thermocline related to the shallow bottom at the Campeche Bank. Oligotrophic conditions were observed in the 50 m upper layer and mesotrophic conditions were found below this layer. The differences between the Campeche Bank and Campeche Canyon are that: in the canyon, the nutrient and Chl-a peaks were linked with the cyclone, and the submesoscale processes in the border of an anticyclone and a cyclone, respectively. In the vertical the maximum Chl-a was associated to the base of the euphotic layer and dominated by coccolithophores. In the Campeche Bank the nutrient and Chl-a peaks were influenced by the shelf break in the vertical the maximum Chl-a was associated with the thermocline and the silicoflagellate was identified as the dominant species.

An evaluation of image quality and accuracy of eye bank measurement of donor cornea endothelial cell density in the Specular Microscopy Ancillary Study.

PubMed

Lass, Jonathan H; Gal, Robin L; Ruedy, Katrina J; Benetz, Beth Ann; Beck, Roy W; Baratz, Keith H; Holland, Edward J; Kalajian, Andrea; Kollman, Craig; Manning, Francis J; Mannis, Mark J; McCoy, Kristen; Montoya, Monty; Stulting, Doyle; Xing, Dongyuan

2005-03-01

The Specular Microscopy Ancillary Study was designed to examine donor corneal endothelial specular image quality, compare the central endothelial cell density determined by eye banks with the endothelial cell density determined by a central specular microscopy reading center, and evaluate donor factors that may have an impact on specular image quality and endothelial cell density accuracy. Nonrandomized comparative trial. Endothelial specular images of donor corneas assigned in the Cornea Donor Study. Certified readers assessed donor image quality (analyzable from fair to excellent vs. unanalyzable) and determined the central endothelial cell density. Independent adjudication was performed if there was a difference in the quality of grading or if the endothelial cell density varied by > or =5.0% between readers. Average reading center-determined endothelial cell density was compared with the endothelial cell density determined by each eye bank. Evaluation of image quality and accuracy of endothelial cell density. Of 688 donor endothelial images submitted by 23 eye banks, 663 (96%) were analyzable (excellent, 40 [6%]; good, 302 [44%]; fair, 321 [47%]), and 25 (4%) were unanalyzable by reading center standards. In situ retrieval and greater epithelial exposure correlated with a higher image quality grading. The eye bank-determined endothelial cell density of 434 of the 663 (65%) analyzable images were within 10% of the endothelial cell density determined by the reading center, whereas 185 (28%) were more than 10% higher and 44 (7%) were more than 10% lower. Greater variation in endothelial cell density between the eye banks and the reading center was observed with shorter time of death to preservation, presence of an epithelial defect, folds in Descemet's membrane, lower image quality, and the use of fixed-frame or center method endothelial cell density analysis. Overall, donor endothelial specular image quality and accuracy of endothelial cell density determination were good. However, the data suggest that factors that may affect image quality and contribute to variation in interpretation of the endothelial cell density should be addressed, because the donor endothelial cell density is an important parameter for assessing long-term corneal graft survival.

Genetic comparisons between seed bank and Stipa krylovii plant populations.

PubMed

Han, B; Zhao, M

2011-09-01

The soil seed bank represents the potential plant population since it is the source for population replacement. The genetic structure of a Stipa krylovii (Roshev.) plant population and its soil seed bank was investigated in the Xilinguole Steppe of Inner Mongolia using random amplified polymorphic DNA (RAPD) analyses. The population was sampled at two sites that were in close proximity to each other (0.5 km apart). Thirty plants and 18 seed bank samples were taken from each site to determine the genetic diversity between sites and between sources (plant or seed). The material was analyzed using 13 primers to produce 92 loci. Eighty-six were multi-loci, of which 23 loci (26.74%) of allele frequencies showed significant differences (P < or = 0.05). The genetic similarity between two seed bank sites was 0.9843 while the genetic similarity between two plant sites was 0.9619. Their similarities were all greater than that between the seed bank and plant populations. An analysis of their genetic structure showed that 87.86% of total variation was derived by two-loci. Genetic structures between plant and soil seed bank populations in S. krylovii were different due to the variance of mean gametic disequilibria and mean gene diversity. AMOVA results showed that the majority of variance (88.62%) occurred within sites, 12.75% was from between-groups. Further research is needed to investigate the selective function in maintaining the genetic diversity of Stipa krylovii plant populations.

Volcanic ash in surficial sediments of the Kodiak shelf - An indicator of sediment dispersal patterns

USGS Publications Warehouse

Hampton, M.A.; Bouma, A.H.; Frost, T.P.; Colburn, I.P.

1979-01-01

Surficial sediments of the Kodiak shelf, Gulf of Alaska, contain various amounts of volcanic ash whose physical properties indicate that it originated from the 1912 Katmai eruption. The distribution of ash is related to the shelf physiography and represents redistribution by oceanic circulation rather than the original depositional pattern from the volcanic event. The ash distribution can be used, in conjunction with the distribution of grain sizes, as an indicator of present-day sediment dispersal patterns on the shelf. No significant modern input of sediment is occurring on the Kodiak shelf, which is mostly covered by Pleistocene glacial deposits. Coarse-grained sediments on flat portions of shallow banks apparently are being winnowed, with the removed ash-rich fine material being deposited in shallow depressions on the banks and in three of the four major troughs that cut transversely across the shelf. The other major trough seems to be experiencing a relatively high-energy current regime, with little deposition of fine material. ?? 1979.

Capital Strategy in Diversification Farming Efforts Using SWOT Analysis

NASA Astrophysics Data System (ADS)

Damanhuri; Setyohadi, D. P. S.; Utami, M. M. D.; Kurnianto, M. F.; Hariono, B.

2018-01-01

Wetland farm diversification program in the district of Bojonegoro, Tulungagung, and Ponorogo can not provide an optimal contribution to the income of farmers caused because farmers are not able to cultivate high value-added commodities due to limited capital. This study aims to identify the characteristics of farming, capital pattern, stakeholder role, to analyze farming to know the pattern of planting suggestions and prospects, and to formulate capital facilitation strategy. Farming capital is obtained through loans in financial institutions with different patterns. Small farmers tend to utilize savings and credit cooperatives, microcredit, and loan sharks, while farmers with large wetland holdings tend to utilize commercial banks. P enelitian using descriptive method of farming profit analysis, and SWOT. The government through the banking institutions have provided much facilitation in the form of low-interest loans with flexible payment method. The generic strategy of selected capital facilitation is to empower farmers through farmer groups who have the capability in managing the capital needs of their members.

Characterization of subsurface stratigraphy along the lower American River floodplain using electrical resistivity, Sacramento, California, 2011

USGS Publications Warehouse

Burton, Bethany L.; Powers, Michael H.; Ball, Lyndsay B.

2014-01-01

In July 2011, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, completed a geophysical survey using electrical resistivity along an approximately 6-mile reach of the lower American River in Sacramento, California, to map near-surface lithological variations. This survey is a part of a manifold and comprehensive study of river-flow dynamics and geologic boundary-property knowledge necessary to estimate scour potential and levee erosion risk. Data were acquired on the left (south or west) bank between river mile 5 and 10.7 as well as a short section on the right bank from river mile 5.4 to 6. Thirteen direct-current resistivity profiles and approximately 8.3 miles of capacitively coupled resisistivity data were acquired along accessible areas of the floodplain between the levee and river bank. Capacitively coupled resistivity was used as a reconnaissance tool, because it allowed for greater spatial coverage of data but with lower resolution and depth of investigation than the DC resistivity method. The study area contains Pleistocene-age alluvial deposits, dominated by gravels, sands, silts, and clays, that vary in both lateral extent and depth. Several generations of lithologic logs were used to help interpret resistivity variations observed in the resistivity models.

Differences in delta13C and diameter growth among remnant Scots pine populations in Scotland.

PubMed

Brendel, Oliver; Handley, Linda; Griffiths, Howard

2002-10-01

Published data suggest that differences in wood cellulose carbon isotope composition (delta13C) and xylem ring width among natural populations of Scots pine in Scotland (Pinus sylvestris L.) are attributable to the persistence of palaeotypes of various post-glacial migratory origins. We assessed differences in wood cellulose delta13C and ring width among Scottish Scots pine populations grown in a clone bank and in natural stands at various locations in northern and central Scotland. Ring width and wood cellulose delta13C varied significantly among natural stands. Potential water deficit was positively correlated with wood cellulose delta13C and xylem ring width in the natural stands. Neither wood cellulose delta13C nor xylem ring width of clone bank trees correlated with any climate variables at the sites from which the trees originated, indicating little adaptation to climate for these traits. Xylem ring width showed a site x population interaction for the growth sites (i.e., natural stands versus clone bank), but wood cellulose delta13C did not. These results suggest that climate variation in Scotland has not resulted in significant genetic variation in wood cellulose delta13C or xylem ring width in post-glacial populations.

Indigenous Students in Bolivian Primary Schools: Patterns and Determinants of Inequities. A World Bank Study.

ERIC Educational Resources Information Center

McEwan, Patrick J.; Jimenez, Wilson

This paper examines the patterns and determinants of inequities between indigenous and non-indigenous students in Bolivian primary (elementary) schools, using a 1997 survey of third and sixth graders. Analysis shows that, on average, indigenous students are of lower socioeconomic status, and their schools appear to have fewer instructional…

State activism and the hidden incentives behind bank acquisitions.

PubMed

Marquis, Christopher; Guthrie, Doug; Almandoz, Juan

2012-01-01

A number of studies have shown that, as a result of the ambiguity of US legal mandates, organizations have considerable latitude in how they comply with regulations. In this paper, we address how the different agendas of the federal and state governments increase ambiguities in state-firm relations and how states are interested actors in creating opportunities for firms to navigate the federal legislation. We analyze the institutional forces behind bank acquisitions within and across state lines in order to illuminate the ways that US states take advantage of federal ambiguity and are able to shape corporate practices to their benefit. We specifically examine how patterns of bank acquisitions are shaped by the crucial relationship between the federal Community Reinvestment Act (CRA) and a little-understood provision in the federal tax code that is implemented at the state level, the Low-Income Housing Tax Credit (LIHTC). The relationship is complex because, while the federal government uses the CRA to control bank acquisition activity, states promote use of the LIHTC, through which banks can address federal CRA concerns, and thereby promote bank acquisitions in their jurisdictions. Thus, our findings suggest that the implementation of social legislation at one level in a federal regulatory system undermines the mechanisms of social legislation at another level. We use archival research and in-depth interviews to examine the interaction between these institutional processes and formulate hypotheses that predict the ways in which bank acquisitions are constrained by banks' CRA ratings and the way states in turn help banks overcome their CRA constraints. Quantitative analyses of all bank acquisitions in the United States from 1990-2000 largely support these hypotheses. Copyright © 2011 Elsevier Inc. All rights reserved.

Patterns of seed bank and vegetation diversity along a tidal freshwater river.

PubMed

Elsey-Quirk, Tracy; Leck, Mary Allessio

2015-12-01

Species richness and diversity may increase with spatial scale related to increased area and heterogeneity of habitat. Yet, in bidirectional hydrologically connected tidal ecosystems, secondary dispersal via hydrochory has the potential to homogenize seed banks, and both life history characteristics and tolerances to environmental conditions influence the composition of plant communities. How species richness, diversity, and composition of seed banks and vegetation change along environmental gradients and at different spatial scales is not well understood. We explored the relationships of seed bank and vegetation diversity across 135 plots along a tidal freshwater river in the Delaware Estuary, USA. Species richness and diversity were partitioned across three hierarchical spatial scales: individual plots, transects perpendicular to the tidal channel, and river kilometers. Community structure was also examined as it related to distance from the tidal channel and location along the tidal river. Species richness was 89 in the seed bank and 54 in the vegetation. Species-area relationships revealed that species richness reached a near maximum asymptote inland (20 m from channel) for the seed bank and at the edge (0 m) for the vegetation. Rare occurrences of species in the seed bank and vegetation were greatest 5 m from the channel edge. As spatial scale increased, seed bank richness increased, associated with the progressive accumulation of species. Seed bank diversity, however, was maximized within small plot areas and along the river. Diversity of the vegetation was maximized locally due to the abundance of a few common species. These findings suggest that suites of common species contributed to high localized vegetation diversity, yet large spatial scales maximized the number and diversity of species in the seed bank and vegetation through rare encounters, as well as the complexity of the landscape. © 2015 Botanical Society of America.

Fine sediment trapping in river lateral cavities

NASA Astrophysics Data System (ADS)

Juez, C.; Maechler, G.; Schleiss, A. J.; Franca, M. J.

2016-12-01

River restoration is nowadays a major issue in the field of hydraulics. The natural course and geometry of the rivers have been artificially changed by human activities for different purposes (land gaining, flood protection, agriculture). From a morphologic point of view, channelized rivers often display a straight path and monotonous river banks. This is in contradiction with natural morphology, where a high diversity can be found across the channel path (meanders) and the banks (pools, riffles). One way to restore rivers consist of transforming the artificial banks by adding macro-roughness elements in the lateral river banks (also called cavities and lateral embayments). The creation of irregularities on the banks causes new flow patterns that diversify the river habitat. However, these lateral cavities may be also responsible of the change of the river morphology, since they may trap the fine sediments travelling within the water. This is particularly important in glacier-fed streams such as the upper Rhone River in Switzerland. These are charged with fine sediments resulting from the erosion of the underlying glaciers bottom. The creation of lateral cavities may affect the sediment and morphological equilibrium of the river since these may trap sediments. This work aims to study the influence of the lateral cavities on the transport of fine sediments in the main channel. A set of laboratory experiments were done which covered a wide range of rectangular cavity configurations. Key parameters such as the flow discharge, the aspect ratio of the cavities and the initial sediment concentration were tested. Surface PIV, sediment samples and turbidity temporal records were collected during the experiments. The trapping efficiency of the cavities and the associated flow patterns were analyzed. The resulting conclusions provide a useful information for the future design of river restoration projects.

Bank accretion and the development of vegetated depositional surfaces along modified alluvial channels

USGS Publications Warehouse

Hupp, C.R.; Simon, A.

1991-01-01

This paper describes the recovery of stable bank form and development of vegetated depositional surfaces along the banks of channelized West Tennessee streams. Most perennial streams in West Tennessee were straightened and dredged since the turn of the century. Patterns of fluvial ecological responses to channelization have previously been described by a six-stage model. Dendrogeomorphic (tree-ring) techniques allowed the determination of location, timing, amount, and rate of bank-sediment deposition. Channel cross sections and ecological analyses made at 101 locations along 12 streams, encompassing bends and straight reaches, show that channel and bank processes initially react vertically to channelization through downcutting. A depositional surface forms on banks once bed-degradation and heightened bank mass wasting processes have eased or slowed. The formation of this depositional surface marks the beginning of bank recovery from channelization. Dominating lateral processes, characteristic of stable or natural channels, return during the formation and expansion of the depositional surface, suggesting a relation with thalweg deflection, point-bar development, and meanderloop extension. Characteristic woody riparian vegetation begins to grow as this depositional surface develops and becomes part of the process and form of restabilizing banks. The depositional surface initially forms low on the bank and tends to maintain a slope of about 24??. Mean accretion rates ranges from 5.9 cm/yr on inside bends to 0 cm/yr on most outside bends; straight reaches have a mean-accretion rate of 4.2 cm/yr. The relatively stable, convex upward, depositional surface expands and ultimately attaches to the flood plain. The time required for the recovery process to reach equilibrium averaged about 50 years. Indicative pioneer speccies of woody riparian vegetation include black willow, river birch, silver maple, and boxelder. Stem densities generally decrease with time after and initial flush of about 160 stems per 100 m2. Together bank accretion and vegetative regrowth appear to be the most important environmental processes involved in channel bank recovery from channelization or rejuvenation. ?? 1991.

Variation of Metallothionein I and II Gene Expression in the Bank Vole (Clethrionomys glareolus) Under Environmental Zinc and Cadmium Exposure.

PubMed

Mikowska, Magdalena; Dziublińska, Barbara; Świergosz-Kowalewska, Renata

2018-07-01

The main idea of the study was to assess how environmental metal pollution activates defence responses at transcription levels in the tissues of bank voles (Clethrionomys glareolus). For this purpose, the metallothioneine (MT) genes expression (a well known biomarker of exposure and response to various metals) was measured. The real-time PCR method was used for relative quantification of metallothionein I and metallothionein II expressions in the livers, kidneys and testes of bank voles from six populations exposed to different contaminants, mainly zinc, cadmium and iron. The assessment of Zn, Cu and Fe concentrations in the tissues allowed to study the MTs gene expression responses to these metals. ANOVA analysis showed differences between populations in terms of metal concentration in tissues, livers and kidneys. Student T test showed significant differences in metal concentration between unpolluted and polluted sites only for the liver tissue: significantly lower Zn levels and significantly higher Fe levels in the unpolluted sites. Kruskal-Wallis test performed on C T data shows differences in the gene expressions between populations for both MT genes for liver and testes. In the liver metallothionein I gene expression was upregulated in populations considered as more polluted (up to 7.5 higher expression in Miasteczko Śląskie comparing to Mikołajki). Expression of metallothionein II revealed a similar pattern. In kidneys, differences in expression of both MT genes were not that evident. In testes, MT upregulation in polluted sites was noted for metallothionein II. For metallothionein however, we found downregulation in populations from more contaminated sites. The expressions of both MTs were positively influenced by cadmium in kidney (concentration data from the previous study) and zinc and copper in liver, while cadmium had effects only on the liver MT II gene expression. Positive relationship was obtained for lead and metallothionein II expression in the liver.

Spatial and temporal variations in prehistoric human settlement and their influencing factors on the south bank of the Xar Moron River, Northeastern China

NASA Astrophysics Data System (ADS)

Jia, Xin; Yi, Shuangwen; Sun, Yonggang; Wu, Shuangye; Lee, Harry F.; Wang, Lin; Lu, Huayu

2017-03-01

The West Liao River Basin is the hub of ancient civilizations as well as the birthplace of rain-fed agriculture in Northern China. In the present study, based on 276 archaeological sites on the south bank of the Xar Moron River, Northeastern China, we trace the changes in prehistoric cultures as well as the shifts in the spatial and temporal patterns of human settlement in the West Liao River Basin. Location information for those sites was obtained from fieldwork. Factors such as climate change, landform evolution of the Horqin Dunefield, and subsistence strategies practiced at the sites were extracted via the meta-analysis of published literature. Our results show that the Holocene Optimum promoted the emergence of Neolithic Culture on the south bank of the Xar Moron River. Monsoon failure might have caused the periodic collapse or transformation of prehistoric cultures at (6.5, 4.7, 3.9, and 3.0) kyr B.P., leaving spaces for new cultural types to develop after these gaps. The rise and fall of different cultures was also determined by subsistence strategies. The Xiaoheyan Culture, with mixed modes of subsistence, weakened after 4.7 kyr B.P., whereas the Upper Xiajiadian Culture, supported by sheep breeding, expanded after 3.0 kyr B.P. Global positioning system data obtained from the archaeological sites reveal that cultures with different subsistence strategies occupied distinct geographic regions. Humans who subsisted on hunting and gathering resided at higher altitudes during the Paleolithic Age (1074 m a.s.l.). Mixed subsistence strategies led humans to settle down at 600-1000 m a.s.l. in the Neolithic Age. Agricultural activities caused humans to migrate to 400-800 m a.s.l. in the early Bronze Age, whereas livestock production shifted human activities to 800-1200 m a.s.l. in the late Bronze Age.

Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels

USGS Publications Warehouse

Reinhold, Ann Marie; Bramblett, Robert G.; Zale, Alexander V.; Poole, Geoffrey C.; Roberts, David W.

2017-01-01

The alteration of rivers by anthropogenic bank stabilization to prevent the erosion of economically valuable lands and structures has become commonplace. However, such alteration has ambiguous consequences for fish assemblages, especially in large rivers. Because most large, temperate rivers have impoundments, it can be difficult to separate the influences of bank stabilization structures from those of main-stem impoundments, especially because both stabilization structures and impoundments can cause side-channel loss. Few large rivers are free flowing and retain extensive side channels, but the Yellowstone River (our study area) is one such river. We hypothesized that in this river (1) bank stabilization has changed fish assemblage structure by altering habitats, (2) side-channel availability has influenced fish assemblage structure by providing habitat heterogeneity, and (3) the influences of bank stabilization and side channels on fish assemblages were spatially scale dependent. We developed a spatially explicit framework to test these hypotheses. Fish assemblage structure varied with the extent of bank stabilization and the availability of side channels; however, not all assemblage subsets were influenced. Nevertheless, bank stabilization and side channels had different and sometimes opposite influences on the fish assemblage. The effects of side channels on fish were more consistent and widespread than those of bank stabilization; the catches of more fishes were positively correlated with side-channel availability than with the extent of bank stabilization. The influences of bank stabilization and side channels on the relative abundances of fish also varied, depending on species and river bend geomorphology. The variation in river morphology probably contributed to the assemblage differences between stabilized and reference river bends; stabilized alluvial pools were deeper than reference alluvial pools, but the depths of stabilized and reference bluff pools did not differ. The strengths of the relationships among fish assemblages, bank stabilization, and side channels were spatially scale dependent; optimum spatial scales ranged from less than 200 m to 3,200 m up- and downstream, suggesting that bank stabilization and side channels influenced fish assemblages across multiple spatial scales.

Control control control: a reassessment and comparison of GenBank and chromatogram mtDNA sequence variation in Baltic grey seals (Halichoerus grypus).

PubMed

Fietz, Katharina; Graves, Jeff A; Olsen, Morten Tange

2013-01-01

Genetic data can provide a powerful tool for those interested in the biology, management and conservation of wildlife, but also lead to erroneous conclusions if appropriate controls are not taken at all steps of the analytical process. This particularly applies to data deposited in public repositories such as GenBank, whose utility relies heavily on the assumption of high data quality. Here we report on an in-depth reassessment and comparison of GenBank and chromatogram mtDNA sequence data generated in a previous study of Baltic grey seals. By re-editing the original chromatogram data we found that approximately 40% of the grey seal mtDNA haplotype sequences posted in GenBank contained errors. The re-analysis of the edited chromatogram data yielded overall similar results and conclusions as the original study. However, a significantly different outcome was observed when using the uncorrected dataset based on the GenBank haplotypes. We therefore suggest disregarding the existing GenBank data and instead using the correct haplotypes reported here. Our study serves as an illustrative example reiterating the importance of quality control through every step of a research project, from data generation to interpretation and submission to an online repository. Errors conducted in any step may lead to biased results and conclusions, and could impact management decisions.

Control Control Control: A Reassessment and Comparison of GenBank and Chromatogram mtDNA Sequence Variation in Baltic Grey Seals (Halichoerus grypus)

PubMed Central

Fietz, Katharina; Graves, Jeff A.; Olsen, Morten Tange

2013-01-01

Genetic data can provide a powerful tool for those interested in the biology, management and conservation of wildlife, but also lead to erroneous conclusions if appropriate controls are not taken at all steps of the analytical process. This particularly applies to data deposited in public repositories such as GenBank, whose utility relies heavily on the assumption of high data quality. Here we report on an in-depth reassessment and comparison of GenBank and chromatogram mtDNA sequence data generated in a previous study of Baltic grey seals. By re-editing the original chromatogram data we found that approximately 40% of the grey seal mtDNA haplotype sequences posted in GenBank contained errors. The re-analysis of the edited chromatogram data yielded overall similar results and conclusions as the original study. However, a significantly different outcome was observed when using the uncorrected dataset based on the GenBank haplotypes. We therefore suggest disregarding the existing GenBank data and instead using the correct haplotypes reported here. Our study serves as an illustrative example reiterating the importance of quality control through every step of a research project, from data generation to interpretation and submission to an online repository. Errors conducted in any step may lead to biased results and conclusions, and could impact management decisions. PMID:23977362

Biotic variation in coastal water bodies in Sussex, England: Implications for saline lagoons

NASA Astrophysics Data System (ADS)

Joyce, Chris B.; Vina-Herbon, Cristina; Metcalfe, Daniel J.

2005-12-01

Coastal water bodies are a heterogeneous resource typified by high spatial and temporal variability and threatened by anthropogenic impacts. This includes saline lagoons, which support a specialist biota and are a priority habitat for nature conservation. This paper describes the biotic variation in coastal water bodies in Sussex, England, in order to characterise the distinctiveness of the saline lagoon community and elucidate environmental factors that determine its distribution. Twenty-eight coastal water bodies were surveyed for their aquatic flora and invertebrate fauna and a suite of exploratory environmental variables compiled. Ordination and cluster analyses were used to examine patterns in community composition and relate these to environmental parameters. Biotic variation in the coastal water body resource was high. Salinity was the main environmental parameter explaining the regional distribution of taxa; freshwater and saline assemblages were evident and related to sea water ingress. Freshwater sites were indicated by the plant Myriophyllum spicatum and gastropod mollusc Lymnaea peregra, while more saline communities supported marine and brackish water taxa, notably a range of chlorophytic algae and the bivalve mollusc Cerastoderma glaucum. Site community differences were also related to bank slope and parameters describing habitat heterogeneity. A saline lagoon community was discerned within the matrix of biotic variation consisting of specialist lagoonal species with associated typically euryhaline taxa. For fauna, the latter were the molluscs Abra tenuis and Hydrobia ulvae, and the crustaceans Corophium volutator and Palaemonetes varians, and for flora they were the algae Ulva lactuca, Chaetomorpha mediterranea, Cladophora spp. and Enteromorpha intestinalis. One non-native polychaete species, Ficopomatus enigmaticus, also strongly influenced community structure within the lagoonal resource. The community was not well defined as specialist and associated taxa were distributed throughout the spectrum of sites surveyed. Implications for the identification and conservation of saline lagoons are discussed.

Modifiers: Increasing Richness and Nuance of Design Pattern Languages

NASA Astrophysics Data System (ADS)

Kolfschoten, Gwendolyn L.; Briggs, Robert O.; Lukosch, Stephan

One of the challenges when establishing and maintaining a pattern language is to balance richness with simplicity. On the one hand, designers need a variety of useful design patterns to increase the speed of their design efforts and to reduce design risk. On the other hand, the greater the variety of design patterns in a language, the higher the cognitive load to remember and select among them. One solution to this problem is the concept of a modifier design pattern, a design pattern for pattern languages. A modifier pattern is a named, documented variation that can be applied to some set of other design patterns. They create similar, useful changes and refinements to the solutions derived from any pattern to which they are applied. The modifier concept, described in this paper emerged in a relatively new design pattern language for collaborative work practices in which the design patterns are called thinkLets. When analyzing the thinkLet pattern language, we found that many of the patterns we knew were variations and refinements of other patterns. However, we also found patterns in these variations; we found variations that could be applied to different patterns, with similar effects. We document these variations as modifiers. In this paper, we introduce the concept of modifier design patterns and illustrate the use of modifiers with two case studies.

Regulatory sequence analysis tools.

PubMed

van Helden, Jacques

2003-07-01

The web resource Regulatory Sequence Analysis Tools (RSAT) (http://rsat.ulb.ac.be/rsat) offers a collection of software tools dedicated to the prediction of regulatory sites in non-coding DNA sequences. These tools include sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Alternative formats are supported for the representation of regulatory motifs (strings or position-specific scoring matrices) and several algorithms are proposed for pattern discovery. RSAT currently holds >100 fully sequenced genomes and these data are regularly updated from GenBank.

An improved discriminative filter bank selection approach for motor imagery EEG signal classification using mutual information.

PubMed

Kumar, Shiu; Sharma, Alok; Tsunoda, Tatsuhiko

2017-12-28

Common spatial pattern (CSP) has been an effective technique for feature extraction in electroencephalography (EEG) based brain computer interfaces (BCIs). However, motor imagery EEG signal feature extraction using CSP generally depends on the selection of the frequency bands to a great extent. In this study, we propose a mutual information based frequency band selection approach. The idea of the proposed method is to utilize the information from all the available channels for effectively selecting the most discriminative filter banks. CSP features are extracted from multiple overlapping sub-bands. An additional sub-band has been introduced that cover the wide frequency band (7-30 Hz) and two different types of features are extracted using CSP and common spatio-spectral pattern techniques, respectively. Mutual information is then computed from the extracted features of each of these bands and the top filter banks are selected for further processing. Linear discriminant analysis is applied to the features extracted from each of the filter banks. The scores are fused together, and classification is done using support vector machine. The proposed method is evaluated using BCI Competition III dataset IVa, BCI Competition IV dataset I and BCI Competition IV dataset IIb, and it outperformed all other competing methods achieving the lowest misclassification rate and the highest kappa coefficient on all three datasets. Introducing a wide sub-band and using mutual information for selecting the most discriminative sub-bands, the proposed method shows improvement in motor imagery EEG signal classification.

Leveraging Call Center Logs for Customer Behavior Prediction

NASA Astrophysics Data System (ADS)

Parvathy, Anju G.; Vasudevan, Bintu G.; Kumar, Abhishek; Balakrishnan, Rajesh

Most major businesses use business process outsourcing for performing a process or a part of a process including financial services like mortgage processing, loan origination, finance and accounting and transaction processing. Call centers are used for the purpose of receiving and transmitting a large volume of requests through outbound and inbound calls to customers on behalf of a business. In this paper we deal specifically with the call centers notes from banks. Banks as financial institutions provide loans to non-financial businesses and individuals. Their call centers act as the nuclei of their client service operations and log the transactions between the customer and the bank. This crucial conversation or information can be exploited for predicting a customer’s behavior which will in turn help these businesses to decide on the next action to be taken. Thus the banks save considerable time and effort in tracking delinquent customers to ensure minimum subsequent defaulters. Majority of the time the call center notes are very concise and brief and often the notes are misspelled and use many domain specific acronyms. In this paper we introduce a novel domain specific spelling correction algorithm which corrects the misspelled words in the call center logs to meaningful ones. We also discuss a procedure that builds the behavioral history sequences for the customers by categorizing the logs into one of the predefined behavioral states. We then describe a pattern based predictive algorithm that uses temporal behavioral patterns mined from these sequences to predict the customer’s next behavioral state.

Effects of prevalence on visual search and decision making in fracture detection

NASA Astrophysics Data System (ADS)

Ethell, Susan C.; Manning, David

2001-06-01

Research concerning disease prevalence has inferred that indices of observer performance become, in part, a function of predetermined prevalence. The cause of this modified performance and decision-making is not fully understood, although the alteration of the criterion level of the observer may be a feature. Novice radiography students were randomly assigned to one of three digitised test banks of 72 wrist images. Test bank A, B and C represented a fracture prevalence of 50%, 83% and 22% respectively. Half of the observers from each group were made aware of the prevalence of their respective test bank. Observers recorded their decisions on an operator rating scale. Results showed significant differences in overall Az between the 50% and 83% prevalence sets (p equals 0.04) and the 50% and 22% prevalence sets (p equals 0.005). Knowledge of the prevalence influenced both sensitivity and specificity values at the 83% prevalence level (p equals 0.03 and 0.02) but not at the lower levels. For test bank A sensitivity was 87%; specificity 53%; Az 0.80, test bank B sensitivity 81%; specificity 48%; Az 0.71 and test bank C sensitivity 85%; specificity 43%; Az 0.68. Analysis of the eye movement patterns of observers under conditions of varying prevalence is in progress.

Contrasting patterns of diversity and population differentiation at the innate immunity gene toll-like receptor 2 (TLR2) in two sympatric rodent species.

PubMed

Tschirren, Barbara; Andersson, Martin; Scherman, Kristin; Westerdahl, Helena; Råberg, Lars

2012-03-01

Comparing patterns of diversity and divergence between populations at immune genes and neutral markers can give insights into the nature and geographic scale of parasite-mediated selection. To date, studies investigating such patterns of selection in vertebrates have primarily focused on the acquired branch of the immune system, whereas it remains largely unknown how parasite-mediated selection shapes innate immune genes both within and across vertebrate populations. Here, we present a study on the diversity and population differentiation at the innate immune gene Toll-like receptor 2 (TLR2) across nine populations of yellow-necked mice (Apodemus flavicollis) and bank voles (Myodes glareolus) in southern Sweden. In yellow-necked mice, TLR2 diversity was very low, as was TLR2 population differentiation compared to neutral loci. In contrast, several TLR2 haplotypes co-occurred at intermediate frequencies within and across bank vole populations, and pronounced isolation by distance between populations was observed. The diversity and differentiation at neutral loci was similar in the two species. These results indicate that parasite-mediated selection has been acting in dramatically different ways on a given immune gene in ecologically similar and sympatric species. Furthermore, the finding of TLR2 population differentiation at a small geographical scale in bank voles highlights that vertebrate innate immune defense may be evolutionarily more dynamic than has previously been appreciated. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

Experimental infections of wild bank voles (Myodes glareolus) from nephropatia epidemica endemic and non-endemic regions revealed slight differences in Puumala virological course and immunological responses.

PubMed

Dubois, Adélaïde; Castel, Guillaume; Murri, Séverine; Pulido, Coralie; Pons, Jean-Baptiste; Benoit, Laure; Loiseau, Anne; Lakhdar, Latifa; Galan, Maxime; Charbonnel, Nathalie; Marianneau, Philippe

2017-05-02

In Europe, the occurrence of nephropathia epidemica (NE), a human disease caused by Puumala virus (PUUV), exhibits considerable geographical heterogeneity despite the continuous distribution of its reservoir, the bank vole Myodes glareolus. To better understand the causes of this heterogeneity, wild voles sampled in two adjacent NE endemic and non-endemic regions of France were infected experimentally with PUUV. The responses of bank voles to PUUV infection, based on the levels of anti-PUUV IgG and viral RNA, were compared. Slight regional differences were highlighted despite the high inter-individual variability. Voles from the NE non-endemic region showed greater immune responsiveness to PUUV infection, but lower levels of RNA in their organs than voles from the endemic region. These results suggest the existence of regional variations in the sensitivity of bank voles that could contribute to the apparent absence of PUUV circulation among voles and the absence of NE in the non-endemic region. Copyright © 2017 Elsevier B.V. All rights reserved.

Annual variation in the atmospheric radon concentration in Japan.

PubMed

Kobayashi, Yuka; Yasuoka, Yumi; Omori, Yasutaka; Nagahama, Hiroyuki; Sanada, Tetsuya; Muto, Jun; Suzuki, Toshiyuki; Homma, Yoshimi; Ihara, Hayato; Kubota, Kazuhito; Mukai, Takahiro

2015-08-01

Anomalous atmospheric variations in radon related to earthquakes have been observed in hourly exhaust-monitoring data from radioisotope institutes in Japan. The extraction of seismic anomalous radon variations would be greatly aided by understanding the normal pattern of variation in radon concentrations. Using atmospheric daily minimum radon concentration data from five sampling sites, we show that a sinusoidal regression curve can be fitted to the data. In addition, we identify areas where the atmospheric radon variation is significantly affected by the variation in atmospheric turbulence and the onshore-offshore pattern of Asian monsoons. Furthermore, by comparing the sinusoidal regression curve for the normal annual (seasonal) variations at the five sites to the sinusoidal regression curve for a previously published dataset of radon values at the five Japanese prefectures, we can estimate the normal annual variation pattern. By fitting sinusoidal regression curves to the previously published dataset containing sites in all Japanese prefectures, we find that 72% of the Japanese prefectures satisfy the requirements of the sinusoidal regression curve pattern. Using the normal annual variation pattern of atmospheric daily minimum radon concentration data, these prefectures are suitable areas for obtaining anomalous radon variations related to earthquakes. Copyright © 2015 Elsevier Ltd. All rights reserved.

Investigating the spatio-temporal variability in groundwater and surface water interactions: a multi-technique approach

NASA Astrophysics Data System (ADS)

Unland, N. P.; Cartwright, I.; Andersen, M. S.; Rau, G. C.; Reed, J.; Gilfedder, B. S.; Atkinson, A. P.; Hofmann, H.

2013-09-01

The interaction between groundwater and surface water along the Tambo and Nicholson rivers, southeast Australia, was investigated using 222Rn, Cl, differential flow gauging, head gradients, electrical conductivity (EC) and temperature profiles. Head gradients, temperature profiles, Cl concentrations and 222Rn activities all indicate higher groundwater fluxes to the Tambo River in areas of increased topographic variation where the potential to form large groundwater-surface water gradients is greater. Groundwater discharge to the Tambo River calculated by Cl mass balance was significantly lower (1.48 × 104 to 1.41 × 103 m3 day-1) than discharge estimated by 222Rn mass balance (5.35 × 105 to 9.56 × 103 m3 day-1) and differential flow gauging (5.41 × 105 to 6.30 × 103 m3 day-1) due to bank return waters. While groundwater sampling from the bank of the Tambo River was intended to account for changes in groundwater chemistry associated with bank infiltration, variations in bank infiltration between sample sites remain unaccounted for, limiting the use of Cl as an effective tracer. Groundwater discharge to both the Tambo and Nicholson rivers was the highest under high-flow conditions in the days to weeks following significant rainfall, indicating that the rivers are well connected to a groundwater system that is responsive to rainfall. Groundwater constituted the lowest proportion of river discharge during times of increased rainfall that followed dry periods, while groundwater constituted the highest proportion of river discharge under baseflow conditions (21.4% of the Tambo in April 2010 and 18.9% of the Nicholson in September 2010).

A salmonella data bank for routine surveillance and research.

PubMed

Talaska, T

1994-01-01

A salmonella data bank has been established in the State of Brandenburg, Germany, with due steps being taken to ensure the protection of personal data. The system of data collection and rapid return of information to the local health and veterinary services have become essential elements in intersectoral cooperation in case investigation, disease prevention, and epidemiological research. A number of issues, particularly those concerning the pathways of infection, characteristics of clusters of cases, and the infection of different population strata can now be examined and monitored. An important feature of the data bank is its accessibility by local as well as central state services using a PC-based program and the wide interdisciplinary circulation of regular reports. Preliminary results on the data volume, age distribution of cases, and salmonella isolation rates in different population strata are presented. The data bank supports studies on marketing and purchasing patterns of agricultural products representing potential vehicles of infection, and it should encourage investigations to trace the reservoirs of infection and contamination points along the food chain.

Implementation theory of distortion-invariant pattern recognition for optical and digital signal processing systems

NASA Astrophysics Data System (ADS)

Lhamon, Michael Earl

A pattern recognition system which uses complex correlation filter banks requires proportionally more computational effort than single-real valued filters. This introduces increased computation burden but also introduces a higher level of parallelism, that common computing platforms fail to identify. As a result, we consider algorithm mapping to both optical and digital processors. For digital implementation, we develop computationally efficient pattern recognition algorithms, referred to as, vector inner product operators that require less computational effort than traditional fast Fourier methods. These algorithms do not need correlation and they map readily onto parallel digital architectures, which imply new architectures for optical processors. These filters exploit circulant-symmetric matrix structures of the training set data representing a variety of distortions. By using the same mathematical basis as with the vector inner product operations, we are able to extend the capabilities of more traditional correlation filtering to what we refer to as "Super Images". These "Super Images" are used to morphologically transform a complicated input scene into a predetermined dot pattern. The orientation of the dot pattern is related to the rotational distortion of the object of interest. The optical implementation of "Super Images" yields feature reduction necessary for using other techniques, such as artificial neural networks. We propose a parallel digital signal processor architecture based on specific pattern recognition algorithms but general enough to be applicable to other similar problems. Such an architecture is classified as a data flow architecture. Instead of mapping an algorithm to an architecture, we propose mapping the DSP architecture to a class of pattern recognition algorithms. Today's optical processing systems have difficulties implementing full complex filter structures. Typically, optical systems (like the 4f correlators) are limited to phase-only implementation with lower detection performance than full complex electronic systems. Our study includes pseudo-random pixel encoding techniques for approximating full complex filtering. Optical filter bank implementation is possible and they have the advantage of time averaging the entire filter bank at real time rates. Time-averaged optical filtering is computational comparable to billions of digital operations-per-second. For this reason, we believe future trends in high speed pattern recognition will involve hybrid architectures of both optical and DSP elements.

Evaluating the utility of vegetation indices to monitoring forests in South America, Western & Central Africa, and Southeast Asia

NASA Astrophysics Data System (ADS)

Cherrington, E. A.; Vincent, G.; Barbier, N.; Pélissier, R.; Sabatier, D.; Berger, U.

2017-12-01

In recent years, there has been controversy regarding applying vegetation indices (VIs) for monitoring tropical forests because of data artefacts related to sun-sensor geometry issues. One means of addressing the issue is comparing the VI variation of tropical forests in similar latitudes. That is, if intra-annual variation in VIs is not driven by real structural and biological changes in the vegetation, then one would expect that forests on the same latitudes should display similar patterns of VI variation. Data from multiple vegetation indices (from MODIS and SPOT VEGETATION) were analyzed over three ten degree by ten degree tiles covering the Guianas, western-central Africa, and northern Borneo in Southeast Asia. In addition to comparing the intra-annual trends across the three regions, the trends were also compared with intra-annual patterns of temporal variation, to see if these explained the VI variation. Those analyses showed that not only did the VI variation across the three regions differ significantly, but the patterns in VI variation for at least two of the three regions were largely correlated with intra-annual variation in environmental factors such as rainfall or light availability. For the Guianas, the pattern of VI variation was largely correlated with the variation in solar radiation, while for western-central Africa, the pattern of variation was more correlated to the variation in rainfall. In contrast, for northern Borneo, the pattern of VI variation did not correlate well with either variation in solar elevation or with intra-annual variation in environmental factors. Firstly, the data would seem to suggest that the patterns of variation in VI data for tropical forests are not strongly biased by artefacts related to sun-sensor geometry effects. More importantly, however, the results also suggest that the phenological of forests in both the Guianas and in western-central Africa are governed by different environmental regimes. That is to say, the forests in the Guianas appear to be light-limited, whereas in contrast, the forests in western-central Africa appear to be moisture-limited. This research suggests that vegetation index data - when corrected for artefacts related to bi-directional effects - can indeed be used to study patterns of temporal variation of forests in the tropics.

What can health care marketing learn from bank marketing?

PubMed

Mindak, W A

1988-01-01

A useful technique in assessing opportunities for international marketers is called "lead lag" analysis. It suggests that one can predict developments, such as demand patterns, in one country by looking at an analogous country. Applying such a technique to the domestic scene, what could we predict about the development and application of marketing to the health care sector if we looked at an analogous service such as banking? Many experts believe that health care is following in the footsteps of banking and point to environmental similarities such as changes in government regulation, new forms of nontraditional competition, increased concern about retail sectors, and pressures on scarce resources. Are there lessons that health care marketers can learn from bankers that might help them avoid some false starts or expensive mistakes?

Individual variation and repeatability of basal metabolism in the bank vole, Clethrionomys glareolus.

PubMed Central

Labocha, Marta K.; Sadowska, Edyta T.; Baliga, Katarzyna; Semer, Aleksandra K.; Koteja, Paweł

2004-01-01

Basal metabolic rate (BMR) is a fundamental energetic trait and has been measured in hundreds of birds and mammals. Nevertheless, little is known about the consistency of the population-average BMR or its repeatability at the level of individual variation. Here, we report that average mass-independent BMR did not differ between two generations of bank voles or between two trials separated by one month. Individual differences in BMR were highly repeatable across the one month interval: the coefficient of intraclass correlation was 0.70 for absolute log-transformed values and 0.56 for mass-independent values. Thus, BMR can be a meaningful measure of an individual physiological characteristic and can be used to test hypotheses concerning relationships between BMR and other traits. On the other hand, mass-independent BMR did not differ significantly across families, and the coefficient of intraclass correlation for full sibs did not differ from zero, which suggests that heritability of BMR in voles is not high. PMID:15101695

Channel Stability and Water Quality of the Alagnak River, Southwestern Alaska

USGS Publications Warehouse

Curran, Janet H.

2003-01-01

The Alagnak River, a National Wild River located in southwestern Alaska, drains an area of 3,600 square kilometers and is used for recreational and subsistence activities, primarily angling, camping, rafting, and hunting by visitors and seasonal residents, and for commercial guiding by several lodges. Increases in visitor use in the 1990s included an increase in the use of high-horsepower motorboats on the river, primarily for angling, and raised concerns regarding human impacts on water quality. Downstream from its confluence with the Nonvianuk River at river kilometer (RK) 93, the Alagnak River is formed in glacial drift and outwash with a single, low bedrock outcrop. Analysis of aerial photography from 1951, 1982, and 2001 shows that the river's multiple channels from RK 57 to 93 have been relatively stable. In contrast, long reaches of multiple channels from RK 35 to 57 changed substantially between 1951 and 1982, creating a new complex of channels. Downstream from RK 35, channel changes in the past 50 years consist largely of minor meander migration. Analysis of water samples collected during this study at RK 21, 46, and 93 and in the Alagnak and Nonvianuk Rivers at the outlets of the lakes that form their source shows that the Alagnak River is a nutrient-poor, calcium-bicarbonate water with low suspended-sediment concentrations. Water chemistry changes little over time or in a downstream direction. Weak patterns over time include high late May/early June concentrations of some nutrients, carbon, and iron. Weak patterns over distance include downstream increases in iron, manganese, and phosphorous. No pervasive human impacts on Alagnak River water chemistry were detected. Local effects that could be diluted within a kilometer downstream of the source were not detectable by this study. Data collected at three continuously recording wake gaging stations at RK 21, 46, and 93 showed that 1999-2000 motorboat use was heaviest in the lower reaches of the river, moderate in the middle reaches, and very light in the upper reaches. Maximum boat use was 137, 40, and 4 wakes per day at RK 21, 46, and 93, respectively. The mean height of the maximum wave generated in each wake was about 0.15 m (meters) at all three gaging stations. Bank erosion monitoring at 14 sites between RK 21 and 93 quantified erosion rates ranging from 0 to 1.1 m/yr (meters per year). Erodibility (based on grain-size analysis) increases in a downstream direction, as do measured erosion rates. Alagnak River banks are noncohesive and erode by grain-by-grain removal of sediment in an alternating pattern of water-driven erosion and gravitydriven erosion. Periodic surveys at bank erosion monitoring sites detected the development of a shallow underwater shelf formed by the action of wind waves and boat wakes at several sites. This shelf contains sediment eroded from the bank and redeposited adjacent to the bank; the shelf reformed as water levels changed but maintained the same wave-generated form throughout much of the season. Measurements of bank erosion processes, particularly the development of a wave-generated shelf, and visual observations suggest that boat wakes increase bank erosion rates, especially at high, exposed banks. Analysis of aerial photography and other assessments of bank erosion processes indicate that this increase in erosion rates has not altered the mechanisms of channel change, which in the past 50 years have included complex, compound channel changes and meander migration.

Rice Agriculture in the River Parishes: The Historical Archeology of the Vacherie Site (16 SJ 40), St. James Parish, Louisiana

DTIC Science & Technology

1990-09-01

1893 and 1921 Mississippi River Commission Chart 72; ca. 1930s Caving Bank Survey Map; Mississippi River Hydrographic Survey Chart 41; and the U.S.G.S...of 1876-1893 and 1921 Mississippi River Commission Charts 72, the Caving Bank survey (ca. 1940s-1970s) map, the Mississippi River Hydrographic Survey... Chart (41), and the U.S.G.S. 7.5’ Lutcher, LA quadrangle, were used to examine patterns of erosion, stability, and bankline aggradation. The batture

Effects of 10-Year Management Regimes on the Soil Seed Bank in Saline-Alkaline Grassland

PubMed Central

Ma, Hongyuan; Yang, Haoyu; Liang, Zhengwei; Ooi, Mark K. J.

2015-01-01

Background Management regimes for vegetation restoration of degraded grasslands can significantly affect the process of ecological succession. However, few studies have focused on variation in the soil seed bank during vegetation restoration under different management regimes, especially in saline-alkaline grassland habitats. Our aim was to provide insights into the ecological effects of grassland management regimes on soil seed bank composition and vegetation establishment in mown, fenced, transplanted and natural grassland sites, all dominated by the perennial rhizomatous grass Leymus chinensis. Methodology We studied species composition and diversity in both the soil seed bank and aboveground vegetation in differently managed grasslands in Northeast China. An NMDS (nonmetric multidimensional scaling) was used to evaluate the relationship between species composition, soil seed banks, aboveground vegetation and soil properties. Principal Findings Fenced and mown grassland sites had high density and species richness in both the soil seed bank and aboveground vegetation. The Transplanted treatment exhibited the highest vegetation growth and seed production of the target species L. chinensis. Seeds of L. chinensis in the soil occurred only in transplanted and natural grassland. Based on the NMDS analysis, the number of species in both the soil seed bank and aboveground vegetation were significantly related to soil Na+, Cl-, RSC (residual sodium carbonate), alkalinity, ESP (exchangeable sodium percentage) and AP (available phosphorus). Conclusions Soil seed bank composition and diversity in the saline-alkaline grassland were significantly affected by the management regimes implemented, and were also significantly related to the aboveground vegetation and several soil properties. Based on vegetative growth, reproductive output and maintenance of soil seed bank, the transplanting was identified as the most effective method for relatively rapid restoration of the target species L. chinensis. This approach could be beneficial for the restoration of dominant species in a wide range of degraded grassland ecosystems. PMID:25902145

Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France.

PubMed

Castel, Guillaume; Couteaudier, Mathilde; Sauvage, Frank; Pons, Jean-Baptiste; Murri, Séverine; Plyusnina, Angelina; Pontier, Dominique; Cosson, Jean-François; Plyusnin, Alexander; Marianneau, Philippe; Tordo, Noël

2015-10-22

Puumala virus (PUUV) is the agent of nephropathia epidemica (NE), a mild form of hemorrhagic fever with renal syndrome (HFRS) in Europe. NE incidence presents a high spatial variation throughout France, while the geographical distribution of the wild reservoir of PUUV, the bank vole, is rather continuous. A missing piece of the puzzle is the current distribution and the genetic variation of PUUV in France, which has been overlooked until now and remains poorly understood. During a population survey, from 2008 to 2011, bank voles were trapped in eight different forests of France located in areas known to be endemic for NE or in area from where no NE case has been reported until now. Bank voles were tested for immunoglobulin (Ig)G ELISA serology and two seropositive animals for each of three different areas (Ardennes, Jura and Orleans) were then subjected to laboratory analyses in order to sequence the whole S, M and L segments of PUUV. Phylogenetic analyses revealed that French PUUV isolates globally belong to the central European (CE) lineage although isolates from Ardennes are clearly distinct from those in Jura and Orleans, suggesting a different evolutionary history and origin of PUUV introduction in France. Sequence analyses revealed specific amino acid signatures along the N protein, including in PUUV from the Orleans region from where NE in humans has never been reported. The relevance of these mutations in term of pathophysiology is discussed.

Variations in Developmental Patterns across Pragmatic Features

ERIC Educational Resources Information Center

Li, Qiong

2016-01-01

Drawing on the findings of longitudinal studies in uninstructed contexts over the last two decades, this synthesis explores variations in developmental patterns across second language (L2) pragmatic features. Two synthesis questions were addressed: (a) What are the variations in developmental patterns across pragmatic features?, and (b) What are…

The accumulation of genetic diversity within a canopy-stored seed bank.

PubMed

Ayre, David; O'Brien, Eleanor; Ottewell, Kym; Whelan, Rob

2010-07-01

Many plants regenerate after fire from a canopy-stored seed bank, in which seed are housed in fire resistant confructescences (cones) that remain on maternal plants. This strategy would be favoured if plants accumulate a sufficiently large and genetically diverse seed bank during interfire intervals. We use a 16-year demographic study and surveys of microsatellite variation to quantify and explain the rate of accumulation of genetic diversity within the canopy seed bank of the shrub Banksia spinulosa. Flowering and fruit set were highly variable. An initial sample in 1991 of 354 reproductively mature plants generated 426 cones over 16 years, of which only 55 cones from 40 maternal plants persisted until 2005. By genotyping seed from these 55 cones we demonstrated that genetic diversity accumulated rapidly within the seed bank. Resampling revealed that diversity was determined by the number, not the age, of cones. Cones were widely distributed among plants, outcrossing rates were high (mean t(m) = 1.00 +/- 0.04) and biparental inbreeding low. Adults displayed little evidence of isolation by distance and the genotypic diversity of seed cohorts was independent of the density of neighbouring potential sires. We therefore estimate that within at least 13 individual years the number of cones produced per year (14-63) would have contained 100% of the adult genetic diversity. We conclude that a highly outcrossed mating system and relatively widespread pollen dispersal ensure the rapid development of a genetically diverse and spatially and temporally homogeneous seed bank.

33 CFR 332.1 - Purpose and general considerations.

Code of Federal Regulations, 2013 CFR

2013-07-01

..., mitigation banks, and in-lieu fee mitigation to offset unavoidable impacts to waters of the United States... available credits and opportunities for mitigation, provide for regional variations in wetland conditions... and the Corps at the national or regional level. No modifications to the basic application, meaning...

40 CFR 230.91 - Purpose and general considerations.

Code of Federal Regulations, 2013 CFR

2013-07-01

..., mitigation banks, and in-lieu fee mitigation to offset unavoidable impacts to waters of the United States..., provide for regional variations in wetland conditions, functions, and values, and apply equivalent... national or regional level. No modifications to the basic application, meaning, or intent of this subpart...

33 CFR 332.1 - Purpose and general considerations.

Code of Federal Regulations, 2014 CFR

2014-07-01

..., mitigation banks, and in-lieu fee mitigation to offset unavoidable impacts to waters of the United States... available credits and opportunities for mitigation, provide for regional variations in wetland conditions... and the Corps at the national or regional level. No modifications to the basic application, meaning...

Space Radar Image of Lisbon, Portugal

NASA Image and Video Library

1999-04-15

This radar image of Lisbon, Portugal illustrates the different land use patterns that are present in coastal Portugal. Lisbon, the national capital, lies on the north bank of the Rio Tejo where the river enters the Atlantic Ocean.

Riparian vegetation recovery patterns following stream channelization: a geomorphic perspective

USGS Publications Warehouse

Hupp, C.R.

1992-01-01

Hundreds of kilometres of West Tennessee streams have been channelized since the turn of the century. After a stream is straightened, dredged, or cleared, basin-wide ecologic, hydrologic, and geomorphic processes bring about an integrated, characteristic recovery sequence. The rapid pace of channel responses to channelization provides an opportunity to document and interpret vegetation recovery patterns relative to otherwise long-term, concomitant evolution of river geomorphology. The linkage of channel bed aggradation, woody vegetation establishment, and bank accretion all lead to recovery of the channel. Pioneer species are hardy and fast growing, and can tolerate moderate amounts of slope instability and sediment deposition; these species include river birch (Betula nigra), black willow (Salix nigra), boxelder (Acer negundo), and silver maple (Acer saccharinum). High stem densities and root-mass development appear to enhance bank stability. Tree-ring analyses suggest that on average 65 yr may be required for recovery after channelization. -from Author

A petabyte size electronic library using the N-Gram memory engine

NASA Technical Reports Server (NTRS)

Bugajski, Joseph M.

1993-01-01

A model library containing petabytes of data is proposed by Triada, Ltd., Ann Arbor, Michigan. The library uses the newly patented N-Gram Memory Engine (Neurex), for storage, compression, and retrieval. Neurex splits data into two parts: a hierarchical network of associative memories that store 'information' from data and a permutation operator that preserves sequence. Neurex is expected to offer four advantages in mass storage systems. Neurex representations are dense, fully reversible, hence less expensive to store. Neurex becomes exponentially more stable with increasing data flow; thus its contents and the inverting algorithm may be mass produced for low cost distribution. Only a small permutation operator would be recalled from the library to recover data. Neurex may be enhanced to recall patterns using a partial pattern. Neurex nodes are measures of their pattern. Researchers might use nodes in statistical models to avoid costly sorting and counting procedures. Neurex subsumes a theory of learning and memory that the author believes extends information theory. Its first axiom is a symmetry principle: learning creates memory and memory evidences learning. The theory treats an information store that evolves from a null state to stationarity. A Neurex extracts information data without a priori knowledge; i.e., unlike neural networks, neither feedback nor training is required. The model consists of an energetically conservative field of uniformly distributed events with variable spatial and temporal scale, and an observer walking randomly through this field. A bank of band limited transducers (an 'eye'), each transducer in a bank being tuned to a sub-band, outputs signals upon registering events. Output signals are 'observed' by another transducer bank (a mid-brain), except the band limit of the second bank is narrower than the band limit of the first bank. The banks are arrayed as n 'levels' or 'time domains, td.' The banks are the hierarchical network (a cortex) and transducers are (associative) memories. A model Neurex was built and studied. Data were 50 MB to 10 GB samples of text, data base, and images: black/white, grey scale, and high resolution in several spectral bands. Memories at td, S(m(sub td)), were plotted against outputs of memories at td-1. S(m(sub td)) was Boltzman distributed, and memory frequencies exhibited self-organized criticality (SOC); i.e., 'l/f(sup beta)' after long exposures to data. Whereas output signals from level n may be encoded with B(sub output) = O(-log(2)f(sup beta)) bits, and input data encoded with B(sub input) = O((S(td)/S(td-1))(sup n)), B(sup output)/B(sub input) is much less than 1 always, the Neurex determines a canonical code for data and it is a lossless data compressor. Further tests are underway to confirm these results with more data types and larger samples.

Ecological niche modelling of bank voles in Western Europe.

PubMed

Amirpour Haredasht, Sara; Barrios, Miguel; Farifteh, Jamshid; Maes, Piet; Clement, Jan; Verstraeten, Willem W; Tersago, Katrien; Van Ranst, Marc; Coppin, Pol; Berckmans, Daniel; Aerts, Jean-Marie

2013-01-28

The bank vole (Myodes glareolus) is the natural host of Puumala virus (PUUV) in vast areas of Europe. PUUV is one of the hantaviruses which are transmitted to humans by infected rodents. PUUV causes a general mild form of hemorrhagic fever with renal syndrome (HFRS) called nephropathia epidemica (NE). Vector-borne and zoonotic diseases generally display clear spatial patterns due to different space-dependent factors. Land cover influences disease transmission by controlling both the spatial distribution of vectors or hosts, as well as by facilitating the human contact with them. In this study the use of ecological niche modelling (ENM) for predicting the geographical distribution of bank vole population on the basis of spatial climate information is tested. The Genetic Algorithm for Rule-set Prediction (GARP) is used to model the ecological niche of bank voles in Western Europe. The meteorological data, land cover types and geo-referenced points representing the locations of the bank voles (latitude/longitude) in the study area are used as the primary model input value. The predictive accuracy of the bank vole ecologic niche model was significant (training accuracy of 86%). The output of the GARP models based on the 50% subsets of points used for testing the model showed an accuracy of 75%. Compared with random models, the probability of such high predictivity was low (χ(2) tests, p < 10(-6)). As such, the GARP models were predictive and the used ecologic niche model indeed indicates the ecologic requirements of bank voles. This approach successfully identified the areas of infection risk across the study area. The result suggests that the niche modelling approach can be implemented in a next step towards the development of new tools for monitoring the bank vole's population.

Ecological Niche Modelling of Bank Voles in Western Europe

PubMed Central

Amirpour Haredasht, Sara; Barrios, Miguel; Farifteh, Jamshid; Maes, Piet; Clement, Jan; Verstraeten, Willem W.; Tersago, Katrien; Van Ranst, Marc; Coppin, Pol; Berckmans, Daniel; Aerts, Jean-Marie

2013-01-01

The bank vole (Myodes glareolus) is the natural host of Puumala virus (PUUV) in vast areas of Europe. PUUV is one of the hantaviruses which are transmitted to humans by infected rodents. PUUV causes a general mild form of hemorrhagic fever with renal syndrome (HFRS) called nephropathia epidemica (NE). Vector-borne and zoonotic diseases generally display clear spatial patterns due to different space-dependent factors. Land cover influences disease transmission by controlling both the spatial distribution of vectors or hosts, as well as by facilitating the human contact with them. In this study the use of ecological niche modelling (ENM) for predicting the geographical distribution of bank vole population on the basis of spatial climate information is tested. The Genetic Algorithm for Rule-set Prediction (GARP) is used to model the ecological niche of bank voles in Western Europe. The meteorological data, land cover types and geo-referenced points representing the locations of the bank voles (latitude/longitude) in the study area are used as the primary model input value. The predictive accuracy of the bank vole ecologic niche model was significant (training accuracy of 86%). The output of the GARP models based on the 50% subsets of points used for testing the model showed an accuracy of 75%. Compared with random models, the probability of such high predictivity was low (χ2 tests, p < 10−6). As such, the GARP models were predictive and the used ecologic niche model indeed indicates the ecologic requirements of bank voles. This approach successfully identified the areas of infection risk across the study area. The result suggests that the niche modelling approach can be implemented in a next step towards the development of new tools for monitoring the bank vole’s population. PMID:23358234

Spatial occupancy patterns and activity of arid rangeland cattle grazing small riparian pastures.

PubMed

Larson, Larry; Johnson, Douglas E; Wilson, Marie; Wilson, Kerry; Louhaichi, Mounir; Williams, John

2017-03-01

The spatial occupancy patterns and activity of cattle grazing three riparian pastures was investigated in northeastern Oregon using Global Positioning System (GPS) collars logging at 1-sec intervals. Cattle consistently selected plant communities as grazing areas that had forage in sufficient volume to meet their requirements and favored communities as resting areas that were dry and open. Cattle were stationary for more than 50% of the time in each pasture and consistently rested between dark and 04:00 hours. Interaction with stream channels was found to be 1-2% of total occupancy time and occurred on less than 10% of channel length. Cattle were indifferent or avoided channel areas relative to their area and, when in this zone, they spent most of their time moving not resting. Cattle did not prefer the stream bank zone and spent only 2% of their time in that zone. When occupied, the stream bank zone was used as a travel corridor to gain access to water or cross the channel to access other pasture areas. These results are in contrast with the general belief that cattle are a primary occupant of the stream bank/channel area; additional research is needed to define factors influencing cattle occupancy. © 2016 Japanese Society of Animal Science.

Novel Gentic Variations Contributing to Asthma Susceptability in Saudi Arabia

ClinicalTrials.gov

2014-04-13

Collection of Clinical Data That Will be Used in This Study and Will Form a Data Bank for Asthma in Saudi Arabia; Identify Known and NOVEL Genetic Risk Factors Contributing to Asthma Susceptibility; Study the Mechanistic Roles of the Genetic Variants Within Major Asthma Susceptibility Genes

21 CFR 207.25 - Information required in registration and drug listing.

Code of Federal Regulations, 2010 CFR

2010-04-01

...-2657 or in conjunction with the FDA voluntary inventory on Form FDA-2422 (Survey Report of Marketed... blood bank, a quantitative listing of the active ingredient(s). Unless the quantitative listing is...)(iii), the registrant may limit the quantitative listing of ingredients to each variation of level of...

21 CFR 207.25 - Information required in registration and drug listing.

Code of Federal Regulations, 2011 CFR

2011-04-01

...-2657 or in conjunction with the FDA voluntary inventory on Form FDA-2422 (Survey Report of Marketed... blood bank, a quantitative listing of the active ingredient(s). Unless the quantitative listing is...)(iii), the registrant may limit the quantitative listing of ingredients to each variation of level of...

21 CFR 207.25 - Information required in registration and drug listing.

Code of Federal Regulations, 2012 CFR

2012-04-01

...-2657 or in conjunction with the FDA voluntary inventory on Form FDA-2422 (Survey Report of Marketed... blood bank, a quantitative listing of the active ingredient(s). Unless the quantitative listing is...)(iii), the registrant may limit the quantitative listing of ingredients to each variation of level of...

21 CFR 207.25 - Information required in registration and drug listing.

Code of Federal Regulations, 2014 CFR

2014-04-01

...-2657 or in conjunction with the FDA voluntary inventory on Form FDA-2422 (Survey Report of Marketed... blood bank, a quantitative listing of the active ingredient(s). Unless the quantitative listing is...)(iii), the registrant may limit the quantitative listing of ingredients to each variation of level of...

21 CFR 207.25 - Information required in registration and drug listing.

Code of Federal Regulations, 2013 CFR

2013-04-01

...-2657 or in conjunction with the FDA voluntary inventory on Form FDA-2422 (Survey Report of Marketed... blood bank, a quantitative listing of the active ingredient(s). Unless the quantitative listing is...)(iii), the registrant may limit the quantitative listing of ingredients to each variation of level of...

Genetic Diversity and Phenotypic Variation for Drought Resistance in Alfalfa (Medicago sativa L.) Germplasm Collected for Drought Tolerance

USDA-ARS?s Scientific Manuscript database

Drought is a major environmental factor hampering alfalfa productivity worldwide. Gene banks provide an array of trait diversity, frequently consisting of specific seed collection projects that focused on acquiring germplasm adapted to specific traits such as drought tolerance. These subsets provide...

Filter Bank Regularized Common Spatial Pattern Ensemble for Small Sample Motor Imagery Classification.

PubMed

Park, Sang-Hoon; Lee, David; Lee, Sang-Goog

2018-02-01

For the last few years, many feature extraction methods have been proposed based on biological signals. Among these, the brain signals have the advantage that they can be obtained, even by people with peripheral nervous system damage. Motor imagery electroencephalograms (EEG) are inexpensive to measure, offer a high temporal resolution, and are intuitive. Therefore, these have received a significant amount of attention in various fields, including signal processing, cognitive science, and medicine. The common spatial pattern (CSP) algorithm is a useful method for feature extraction from motor imagery EEG. However, performance degradation occurs in a small-sample setting (SSS), because the CSP depends on sample-based covariance. Since the active frequency range is different for each subject, it is also inconvenient to set the frequency range to be different every time. In this paper, we propose the feature extraction method based on a filter bank to solve these problems. The proposed method consists of five steps. First, motor imagery EEG is divided by a using filter bank. Second, the regularized CSP (R-CSP) is applied to the divided EEG. Third, we select the features according to mutual information based on the individual feature algorithm. Fourth, parameter sets are selected for the ensemble. Finally, we classify using ensemble based on features. The brain-computer interface competition III data set IVa is used to evaluate the performance of the proposed method. The proposed method improves the mean classification accuracy by 12.34%, 11.57%, 9%, 4.95%, and 4.47% compared with CSP, SR-CSP, R-CSP, filter bank CSP (FBCSP), and SR-FBCSP. Compared with the filter bank R-CSP ( , ), which is a parameter selection version of the proposed method, the classification accuracy is improved by 3.49%. In particular, the proposed method shows a large improvement in performance in the SSS.

Biodiversity and spatial patterns of benthic habitat and associated demersal fish communities at two tropical submerged reef ecosystems

NASA Astrophysics Data System (ADS)

Abdul Wahab, Muhammad Azmi; Radford, Ben; Cappo, Mike; Colquhoun, Jamie; Stowar, Marcus; Depczynski, Martial; Miller, Karen; Heyward, Andrew

2018-06-01

Submerged reef ecosystems can be very diverse and may serve as important refugia for shallow-water conspecifics. This study quantified the benthic and fish communities of two proximate, predominantly mesophotic coral ecosystems (MCEs), Glomar Shoal and Rankin Bank, which are geographically isolated from other similar features in the region. Glomar Shoal is identified as a key ecological feature (KEF) in the North West Marine Region of Australia. Multibeam surveys were performed to characterise the seafloor and to derive secondary environmental variables, used to explain patterns in benthic and fish communities. Towed video surveys quantified benthic cover, and stereo baited remote underwater stations were used to survey fish abundance and diversity. Surveys were completed in depths of 20-115 m. The two MCEs exhibited distinct communities; Rankin Bank consistently had higher cover (up to 30×) of benthic taxa across depths, and fish communities that were twice as abundant and 1.5× more diverse than Glomar Shoal. The location of the MCEs, depth and rugosity were most influential in structuring benthic communities. Phototrophic taxa, specifically macroalgae and hard corals, had up to 22 × higher cover at Rankin Bank than at Glomar Shoal and were dominant to 80 m (compared to 60 m at Glomar Shoal), presumably due to greater light penetration (lower turbidity) and lower sand cover at greater depths. The 20% coral cover at Rankin Bank was comparable to that reported for shallow reefs. The cover of sand, hard corals and sponges influenced fish communities, with higher abundance and diversity of fish associated with shallow hard coral habitats. This study demonstrated that the two MCEs were unique within the local context, and when coupled with their geographical isolation and biodiversity, presents compelling support for the additional recognition of Rankin Bank as a KEF.

Riparian vegetation controls on channels formed in non-cohesive sediment

NASA Astrophysics Data System (ADS)

Gran, K.; Tal, M.; Paola, C.

2002-05-01

Riparian vegetation can significantly influence the morphology of a river, affecting channel geometry and flow dynamics. In channels formed in non-cohesive material, vegetation is the main source of bank cohesion and could affect the overall behavior of the river, potentially constraining the flow from a multi-thread channel to a single-thread channel. To examine the effects of riparian vegetation on streams formed in non-cohesive material, we conducted a series of physical experiments at the St. Anthony Falls Laboratory. The first set of experiments examines the effects of varying densities of vegetation on braided stream dynamics. Water discharge, sediment discharge, and grain size were held constant. For each run, we allowed a braided system to develop, then halved the discharge, and seeded the flume with alfalfa (Medicago sativa). After ten to fourteen days of growth, we returned the discharge to its original value and continued the run for 30-36 hours. Our results show that the influence of vegetation on the overall river pattern varied systematically with the spatial density of plant stems. The vegetation reduced the number of active channels and increased bank stability, leading to lower lateral migration rates, narrower and deeper channels, and an increase in channel relief. All these effects increased with vegetation density. Vegetation also influenced flow dynamics, increasing the variance of flow direction in the vegetated runs, and increasing scour depths through strong downwelling where the flow collided with relatively resistant banks. This oblique bank collision provides a new mechanism for producing secondary flows. We found these bank collision driven secondary flows to be more important than the classical curvature-driven mechanism in the vegetated runs. The next set of experiments examines more closely how the channel pattern evolves through time, allowing for both channel migration and successive vegetation growth. In these on-going experiments, vegetation is reseeded following repeat high flow events, simulating the natural process of vegetation encroachment on the floodplain and channel.

Computational mining for hypothetical patterns of amino acid side chains in protein data bank (PDB)

NASA Astrophysics Data System (ADS)

Ghani, Nur Syatila Ab; Firdaus-Raih, Mohd

2018-04-01

The three-dimensional structure of a protein can provide insights regarding its function. Functional relationship between proteins can be inferred from fold and sequence similarities. In certain cases, sequence or fold comparison fails to conclude homology between proteins with similar mechanism. Since the structure is more conserved than the sequence, a constellation of functional residues can be similarly arranged among proteins of similar mechanism. Local structural similarity searches are able to detect such constellation of amino acids among distinct proteins, which can be useful to annotate proteins of unknown function. Detection of such patterns of amino acids on a large scale can increase the repertoire of important 3D motifs since available known 3D motifs currently, could not compensate the ever-increasing numbers of uncharacterized proteins to be annotated. Here, a computational platform for an automated detection of 3D motifs is described. A fuzzy-pattern searching algorithm derived from IMagine an Amino Acid 3D Arrangement search EnGINE (IMAAAGINE) was implemented to develop an automated method for searching of hypothetical patterns of amino acid side chains in Protein Data Bank (PDB), without the need for prior knowledge on related sequence or structure of pattern of interest. We present an example of the searches, which is the detection of a hypothetical pattern derived from known structural motif of C2H2 structural pattern from zinc fingers. The conservation of particular patterns of amino acid side chains in unrelated proteins is highlighted. This approach can act as a complementary method for available structure- and sequence-based platforms and may contribute in improving functional association between proteins.

Enhanced sediment loading facilitates point bar growth and accelerates bank erosion along a modelled meander bend on the Sacramento River, USA

NASA Astrophysics Data System (ADS)

Ahmed, J.; Constantine, J. A.; Hales, T. C.

2017-12-01

Meandering channels provide a conduit through which sediment and water is routed from the uplands to the sea. Alluvial material is periodically stored and transported through the channel network as permitted by the prevailing hydrologic conditions. The lowlands are typically characterised by accumulations of sediment attached to the inner banks of meander bends (point bars). These bedforms have been identified as important for facilitating a link between in-stream sediment supplies and channel dynamism. A 2D curvilinear hydrodynamic model (MIKE 21C) was used to perform a number of experiments in which the sediment load was adjusted to investigate how changes in alluvial material fluxes affect the development of point bars and the resultant patterns of bank erosion. A doubling of the sediment load caused a longitudinal increase in the bar in the upstream direction and caused a coeval doubling of the transverse channel slope at the meander apex. The upstream growth of the point bar was accompanied by an increase in length over which lateral migration took place at the outer bank. The magnitude of outer bank erosion was 9-times greater for the high-sediment simulation. These results suggest that enhanced sediment loads (potentially the result of changes in land use or climate) can trigger greater rates of bank erosion and channel change through the sequestration of alluvial material on point bars, which encourage high-velocity fluid deflection towards the outer bank of the meander. This controls riparian habitat development and exchanges of sediment and nutrients across the channel-floodplain interface.

International Heart Valve Bank Survey: A Review of Processing Practices and Activity Outcomes

PubMed Central

Albrecht, Helmi; Lim, Yeong Phang; Manning, Linda

2013-01-01

A survey of 24 international heart valve banks was conducted to acquire information on heart valve processing techniques used and outcomes achieved. The objective was to provide an overview of heart valve banking activities for tissue bankers, tissue banking associations, and regulatory bodies worldwide. Despite similarities found for basic manufacturing processes, distinct differences in procedural details were also identified. The similarities included (1) use of sterile culture media for procedures, (2) antibiotic decontamination, (3) use of dimethyl sulfoxide (DMSO) as a cryoprotectant, (4) controlled rate freezing for cryopreservation, and (5) storage at ultralow temperatures of below −135°C. Differences in procedures included (1) type of sterile media used, (2) antibiotics combination, (3) temperature and duration used for bioburden reduction, (4) concentration of DMSO used for cryopreservation, and (5) storage duration for released allografts. For most banks, the primary reasons why allografts failed to meet release criteria were positive microbiological culture and abnormal morphology. On average, 85% of allografts meeting release criteria were implanted, with valve size and type being the main reasons why released allografts were not used clinically. The wide variation in percentage of allografts meeting release requirements, despite undergoing validated manufacturing procedures, justifies the need for regular review of important outcomes as cited in this paper, in order to encourage comparison and improvements in the HVBs' processes. PMID:24163756

[Donors' personal profile in Tuscany's network of milk banks].

PubMed

Strambi, M; Anselmi, A; Coppi, S

2012-10-01

An investigation on human milk donors among the milk banks of Tuscany's network was carried out. Milk banks select, collect, check, process, store and deliver human milk, whose donors should have certain physical and psychological well-being features. The aim of the study was to describe a personal and social profile of milk donors. The study included a sample of 100 milk donors and a sample of 100 non-milk donor mothers; a questionnaire that collected data about mothers' general information, clinical history, pregnancy and delivery, weight variations, state of health, lifestyle, breastfeeding and knowledge about milk banks was administered to all of them. Then information about food history of mothers has also been collected. First the samples of donors were analysed for all variables considered. Subsequently the samples of donors were compared with the samples of non-donors: statistical analysis was carried out with χ2 test and documented significant differences between donors and non-donors for the majority of variables considered in the questionnaire and for food history. Milk donors have a good state of health, and the integration in milk donation initiative headed towards a healthier lifestyle. It is necessary to promote an advertising campaign to integrate social and sanitary politics, fitting to local socio-economical contest. Furthermore, the improvement of milk banks of public hospitals is necessary, as hospitals are places of major stream both of potential donors and newborns.

Effect of Cord Blood Processing on Transplant Outcomes after Single Myeloablative Umbilical Cord Blood Transplantation

PubMed Central

Ballen, Karen K.; Logan, Brent R.; Laughlin, Mary J.; He, Wensheng; Ambruso, Daniel R.; Armitage, Susan E.; Beddard, Rachel L.; Bhatla, Deepika; Hwang, William Y.K.; Kiss, Joseph E.; Koegler, Gesine; Kurtzberg, Joanne; Nagler, Arnon; Oh, David; Petz, Lawrence D.; Price, Thomas H.; Quinones, Ralph R.; Ratanatharathorn, Voravit; Rizzo, J. Douglas; Sazama, Kathleen; Scaradavou, Andromachi; Schuster, Michael W.; Sender, Leonard S.; Shpall, Elizabeth J.; Spellman, Stephen R.; Sutton, Millicent; Weitekamp, Lee Ann; Wingard, John R.; Eapen, Mary

2015-01-01

Variations in cord blood manufacturing and administration are common, and the optimal practice, not known. We compared processing and banking practices at 16 public cord blood banks (CBB) in the United States, and assessed transplant outcomes on 530 single umbilical cord blood (UCB) myeloablative transplantations for hematologic malignancies, facilitated by these banks. UCB banking practices were separated into three mutually exclusive groups based on whether processing was automated or manual; units were plasma and red blood cell reduced or buffy coat production method or plasma reduced. Compared to the automated processing system for units, the day-28 neutrophil recovery was significantly lower after transplantation of units that were manually processed and plasma reduced (red cell replete) (odds ratio [OR] 0.19 p=0.001) or plasma and red cell reduced (OR 0.54, p=0.05). Day-100 survival did not differ by CBB. However, day-100 survival was better with units that were thawed with the dextran-albumin wash method compared to the “no wash” or “dilution only” techniques (OR 1.82, p=0.04). In conclusion, CBB processing has no significant effect on early (day 100) survival despite differences in kinetics of neutrophil recovery. PMID:25543094

Population issues in economic planning: uses of demography in business.

PubMed

Graham, R J

1984-01-01

Economists use demography in planning and forecasting business needs. As a bank, Westpac uses the information for its own internal business purposes and to assess general economic trends. Externally, the bank is expected by government and the public to have some authoritative views on the state of the economy. To form these views, it is necessary to understand a very wide array of statistical indicators, including demographic statistics. The main population issues of concern are: size, location, and changes in the population of Australia as a whole and by State; labor force (including projections); age profile of Australia and by State. The major source for this information is the Australian Bureau of Statistics. More detailed patterns often emerge, particularly for individual States, from papers prepared by others. This information is used by Westpac in 3 main planning areas and 2 broad assessment areas: planning -- location of bank branches, products/services offered, and marketing of products/services; and assessment -- economic outlook (labor force, housing needs, demand for funds) and specific industries. Recently, Westpac restructured its organization to cater to the changing needs of customers and the changing geographic patterns of population spread. The bank now has 4 major groups: retail financial services for personal and commercial markets; corporate and international; management services; and group planning (includes economic department). To offer products that fit the market, the bank needs to know the characteristics of the population by age, spending patterns, lifestyle preferences, and investment needs. Within Australia, a relatively new service offered by most financial institutions, which is directly related to population issues, is a counseling service for retirees. Westpac has a product called Club 55, which is a package of services designed for persons who have retired or are planning to retire. Another clearly perceived community need is for superannuation schemes. The marketing of financial services clearly is in evidence. With deregulation of the financial system, the pace of competition for the household dollar and corporate banking business has intensified in the last year or so, and the barrage of advertising is 1 result. Such advertising is carefully aimed at potential customers grouped by age, location, lifestyle, and spending patterns. Marketing is also conducted indirectly through industry groups and at various trade seminars. Turning to the broader aspects of economic planning, the same kinds of population indicators are applied to macroeconomic issues. In particular, assessments of labor force trends, housing needs, and demand for funds from the public and private sectors will affect financial policy of business and monetary and fiscal policy of governments. The most commonly used indicators are: population size/characteristics; location; population growth; labor force; labor force mobility, including geographic mobility; migration -- both shortterm and longterm. The aging of the population holds many implications for future government economic policy. This trend holds obvious implications for government spending and the taxation burden on the work force. Australia will face significantly higher welfare expenditures for which funding will need to be obtained from a relatively stable working age population -- about 65% of total population for the next 20 years.

Contrasting Patterns of Fine Fluvial Sediment Delivery in Two Adjacent Upland Catchments

NASA Astrophysics Data System (ADS)

Perks, M.; Bracken, L.; Warburton, J.

2010-12-01

Quantifying patterns of fine suspended sediment transfer in UK upland rivers is of vital importance in combating the damaging effects of elevated fluxes of suspended sediment, and sediment associated transport of contaminants, on in-stream biota. In many catchments of the UK there is still a lack of catchment-wide understanding of both the spatial patterns and temporal variation in fine sediment delivery. This poster describes the spatial and temporal distribution of in-stream fine sediment delivery from a network of 44 time-integrated mass flux samplers (TIMs) in two adjacent upland catchments. The two catchments are the Esk (210 km2) and Upper Derwent (236 km2) which drain the North York Moors National Park. Annual suspended sediment loads in the Upper Derwent are 1273 t, whereas in the Esk catchment they are greater at 1778 t. Maximum yields of 22 t km-2 yr -1 were measured in the headwater tributaries of the Rye River (Derwent), whereas peak yields in the Esk are four times greater (98 t km-2 yr-1) on the Butter Beck subcatchment. Analysis of the within-storm sediment dynamics, indicates that the sediment sources within the Upper Derwent catchment are from distal locations possibly mobilised by hillslope runoff processes, whereas in the Esk, sediment sources are more proximal to the channel e.g. within channel stores or bank failures. These estimates of suspended sediment flux are compared with the diffuse pollution potential generated by a risk-based model of sediment transfer (SCIMAP) in order to assess the similarity between the model predictions and observed fluxes.

Variation of ecosystem services and human activities: A case study in the Yanhe Watershed of China

NASA Astrophysics Data System (ADS)

Su, Chang-hong; Fu, Bo-Jie; He, Chan-Sheng; Lü, Yi-He

2012-10-01

The concept of 'ecosystem service' provides cohesive views on mechanisms by which nature contributes to human well-being. Fast social and economic development calls for research on interactions between human and natural systems. We took the Yanhe Watershed as our study area, and valued the variation of ecosystem services and human activities of 2000 and 2008. Five ecosystem services were selected i.e. net primary production (NPP), carbon sequestration and oxygen production (CSOP), water conservation, soil conservation, and grain production. Human activity was represented by a composite human activity index (HAI) that integrates human population density, farmland ratio, influence of residential sites and road network. Analysis results of the five ecosystem services and human activity (HAI) are as follows: (i) NPP, CSOP, water conservation, and soil conservation increased from 2000 to 2008, while grain production declined. HAI decreased from 2000 to 2008. Spatially, NPP, CSOP, and water conservation in 2000 and 2008 roughly demonstrated a pattern of decline from south to north, while grain production shows an endocentric increasing spatial pattern. Soil conservation showed a spatial pattern of high in the south and low in the north in 2000 and a different pattern of high in the west and low in the east in 2008 respectively. HAI is proportional to the administrative level and economic development. Variation of NPP/CSOP between 2000 and 2008 show an increasing spatial pattern from northwest to southeast. In contrast, the variation of soil conservation shows an increasing pattern from southeast to northwest. Variation of water conservation shows a fanning out decreasing pattern. Variation of grain production doesn't show conspicuous spatial pattern. (ii) Variation of water conservation and of soil conservation is significantly positively correlated at 0.01 level. Both variations of water conservation and soil conservation are negatively correlated with variation of HAI at 0.01 level. Variations of NPP/CSOP are negatively correlated with variations of soil conservation and grain production at 0.05 level. (iii) Strong tradeoffs exist between regulation services and provision service, while synergies exist within regulation services. Driving effect of human activities on ecosystem services and tradeoffs and synergies among ecosystem service are also discussed.

CDU improvement technology of etching pattern using photo lithography

NASA Astrophysics Data System (ADS)

Tadokoro, Masahide; Shinozuka, Shinichi; Jyousaka, Megumi; Ogata, Kunie; Morimoto, Tamotsu; Konishi, Yoshitaka

2008-03-01

Semiconductor manufacturing technology has shifted towards finer design rules, and demands for critical dimension uniformity (CDU) of resist patterns have become greater than ever. One of the methods for improving Resist Pattern CDU is to control post-exposure bake (PEB) temperature. When ArF resist is used, there is a certain relationship between critical dimension (CD) and PEB temperature. By utilizing this relationship, Resist Pattern CDU can be improved through control of within-wafer temperature distribution in the PEB process. Resist Pattern CDU improvement contributes to Etching Pattern CDU improvement to a certain degree. To further improve Etching Pattern CDU, etcher-specific CD variation needs to be controlled. In this evaluation, 1. We verified whether etcher-specific CD variation can be controlled and consequently Etching Pattern CDU can be further improved by controlling resist patterns through PEB control. 2. Verifying whether Etching Pattern CDU improvement through has any effect on the reduction in wiring resistance variation. The evaluation procedure is as follows.1. Wafers with base film of Doped Poly-Si (D-Poly) were prepared. 2. Resist patterns were created on them. 3. To determine etcher-specific characteristics, the first etching was performed, and after cleaning off the resist and BARC, CD of etched D-Poly was measured. 4. Using the obtained within-wafer CD distribution of the etching patterns, within-wafer temperature distribution in the PEB process was modified. 5. Resist patterns were created again, followed by the second etching and cleaning, which was followed by CD measurement. We used Optical CD Measurement (OCD) for measurement of resist patterns and etching patterns as OCD is minimally affected by Line Edge Roughness (LER). As a result, 1. We confirmed the effect of Resist Pattern CD control through PEB control on the reduction in etcher-specific CD variation and the improvement in Etching Pattern CDU. 2. The improvement in Etching Pattern CDU has an effect on the reduction in wiring resistance variation. The method for Etching Pattern CDU improvement through PEB control reduces within-wafer variation of MOS transistor's gate length. Therefore, with this method, we can expect to observe uniform within-wafer MOS transistor characteristics.

Model of an axially strained weakly guiding optical fiber modal pattern

NASA Technical Reports Server (NTRS)

Egalon, Claudio O.; Rogowski, Robert S.

1992-01-01

Axial strain can be determined by monitoring the modal pattern variation of an optical fiber. The results of a numerical model developed to calculate the modal pattern variation at the end of a weakly guiding optical fiber under axial strain is presented. Whenever an optical fiber is under stress, the optical path length, the index of refraction, and the propagation constants of each fiber mode change. In consequence, the modal phase term for the fields and the fiber output pattern are also modified. For multimode fibers, very complicated patterns result. The predicted patterns are presented, and an expression for the phase variation with strain is derived.

Cross-correlation matrix analysis of Chinese and American bank stocks in subprime crisis

NASA Astrophysics Data System (ADS)

Zhu, Shi-Zhao; Li, Xin-Li; Nie, Sen; Zhang, Wen-Qing; Yu, Gao-Feng; Han, Xiao-Pu; Wang, Bing-Hong

2015-05-01

In order to study the universality of the interactions among different markets, we analyze the cross-correlation matrix of the price of the Chinese and American bank stocks. We then find that the stock prices of the emerging market are more correlated than that of the developed market. Considering that the values of the components for the eigenvector may be positive or negative, we analyze the differences between two markets in combination with the endogenous and exogenous events which influence the financial markets. We find that the sparse pattern of components of eigenvectors out of the threshold value has no change in American bank stocks before and after the subprime crisis. However, it changes from sparse to dense for Chinese bank stocks. By using the threshold value to exclude the external factors, we simulate the interactions in financial markets. Project supported by the National Natural Science Foundation of China (Grant Nos. 11275186, 91024026, and FOM2014OF001) and the University of Shanghai for Science and Technology (USST) of Humanities and Social Sciences, China (Grant Nos. USST13XSZ05 and 11YJA790231).

Seasonal and photoperiodic effects on lipid droplet size and lipid peroxidation in the brown adipose tissue of bank voles (Myodes glareolus).

PubMed

Bonda-Ostaszewska, Elżbieta; Włostowski, Tadeusz; Krasowska, Alicja; Kozłowski, Paweł

2012-10-01

Seasonal changes in lipid droplet size and lipid peroxidation in the brown adipose tissue (BAT) of wild bank voles were examined. In addition, a role of photoperiod in these changes was studied; bank voles were held from the birth under long photoperiod (LP) for 12 weeks, and then half of them was transferred to short photoperiod (SP) for 6 weeks and another one remained under LP. In the wild bank voles the absolute BAT weight was seasonally constant, while the significant differences in the lipid droplet size were observed. The smallest lipid droplets (mean, 11 μm(2)) were seen in winter; they increased by 30 % in spring and reached the highest size (24 μm(2)) in summer. Lipid peroxidation in the BAT did not differ significantly between the seasons, although high intraseason variation of this process was noted. The laboratory experiment revealed that the size of lipid droplets was determined by photoperiod; SP induced 13-fold decrease, and continuous exposure to LP brought about a further 2.5-fold increase in the size of lipid droplets. Conversely, a significant decrease in lipid peroxidation was seen in LP bank voles in comparison with the SP animals. The data indicate that short photoperiod is responsible for the small size of lipid droplets in the BAT of bank voles during winter, which may be a necessary requirement for high thermogenic capacity of the tissue. Photoperiod appears also to affect lipid peroxidation in the BAT of these animals.

Artificial insemination with donor sperm (AID): heterogeneity in sperm banking facilities in a single country (Belgium).

PubMed

Thijssen, A; Dhont, N; Vandormael, E; Cox, A; Klerkx, E; Creemers, E; Ombelet, W

2014-01-01

Due to the high inflow of foreign patients seeking cross-border reproductive care in Belgium and the increased number of lesbian couples and single women who call for artificial insemination with donor sperm (AID), Belgian sperm banks nowadays face a shortage in donor sperm. However, since there is no central registration system for sperm donors in Belgium, no figures are currently available supporting this statement. Therefore a study was performed to obtain a detailed overview of the sperm banking facilities in Belgium. Questionnaires were sent to all Belgian centres for assisted reproduction with laboratory facilities (n = 18) to report on their sperm banking methods. The results showed that 82% of the centres rely partially or completely on foreign donor sperm. Moreover, four of the thirteen centres that have their own sperm bank use imported donor sperm in > 95% AID cycles. Our results show that in 63% of the Belgian AID cycles imported Danish donor sperm is being used. Donor recruitment is mainly performed through the centre's website (61%) or by distributing flyers in the centre (46%) and 9 to 180 potential donors have been recruited per centre in 2013. Eventually, 15 to 50% of these candidate donors were accepted. Different criteria for donor acceptance are handled by the centres: donor age limits range from 18-25 to 36-46 years old, and thresholds for sperm normality differ considerably. We can conclude that a wide variation in methods associated with sperm banking is observed in Belgian centres.

Artificial insemination with donor sperm (AID): heterogeneity in sperm banking facilities in a single country (Belgium)

PubMed Central

Thijssen, A.; Dhont, N.; Vandormael, E.; Cox, A.; Klerkx, E.; Creemers, E.; Ombelet, W.

2014-01-01

Due to the high inflow of foreign patients seeking cross-border reproductive care in Belgium and the increased number of lesbian couples and single women who call for artificial insemination with donor sperm (AID), Belgian sperm banks nowadays face a shortage in donor sperm. However, since there is no central registration system for sperm donors in Belgium, no figures are currently available supporting this statement. Therefore a study was performed to obtain a detailed overview of the sperm banking facilities in Belgium. Questionnaires were sent to all Belgian centres for assisted reproduction with laboratory facilities (n = 18) to report on their sperm banking methods. The results showed that 82% of the centres rely partially or completely on foreign donor sperm. Moreover, four of the thirteen centres that have their own sperm bank use imported donor sperm in > 95% AID cycles. Our results show that in 63% of the Belgian AID cycles imported Danish donor sperm is being used. Donor recruitment is mainly performed through the centre’s website (61%) or by distributing flyers in the centre (46%) and 9 to 180 potential donors have been recruited per centre in 2013. Eventually, 15 to 50% of these candidate donors were accepted. Different criteria for donor acceptance are handled by the centres: donor age limits range from 18-25 to 36-46 years old, and thresholds for sperm normality differ considerably. We can conclude that a wide variation in methods associated with sperm banking is observed in Belgian centres. PMID:25009728

Do cacti form soil seed banks? An evaluation using species from the Southern Central Andes.

PubMed

Lindow-López, Lucía; Galíndez, Guadalupe; Sühring, Silvia; Pastrana-Ignes, Valeria; Gorostiague, Pablo; Gutiérrez, Angela; Ortega-Baes, Pablo

2018-06-22

There is controversy over whether cactus species form soil seed banks. Although it is commonly assumed that cacti do not form seed banks, very few studies have evaluated them. In this work, we analyzed whether cactus species form soil seed banks, studying seed distribution, seed density and seed longevity in the Southern Central Andes. Soil samples were collected in two microhabitats (under nurse plants and in bare areas) at 12 selected sites. We determined seed presence-absence, density and distribution for 32 native cactus species. Seed longevity for six of these species was determined through a burial experiment. We recorded viable seeds for 62.5% of the 32 evaluated species, finding variation in seed density between microenvironments and among populations. In some species, the greatest seed density was found under potential nurse plants. Seed germination and seed viability decreased with burial time, with seed longevity always being less than 24 months after burial. Our results show strong evidence that cactus species do form seed banks. Seed density can vary between microenvironments and among populations, suggesting that cactus-nurse plant associations can also be explained by differential seed dispersal and not only by differential establishment. We found that Echinopsis and Gymnocalycium species form short-term seed banks. Our results will help to better understand the population dynamics of cactus species, a focal species group for conservation actions because many of them are threatened by human activities. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Composition and Variation of Macronutrients, Immune Proteins, and Human Milk Oligosaccharides in Human Milk From Nonprofit and Commercial Milk Banks.

PubMed

Meredith-Dennis, Laura; Xu, Gege; Goonatilleke, Elisha; Lebrilla, Carlito B; Underwood, Mark A; Smilowitz, Jennifer T

2018-02-01

When human milk is unavailable, banked milk is recommended for feeding premature infants. Milk banks use processes to eliminate pathogens; however, variability among methods exists. Research aim: The aim of this study was to compare the macronutrient (protein, carbohydrate, fat, energy), immune-protective protein, and human milk oligosaccharide (HMO) content of human milk from three independent milk banks that use pasteurization (Holder vs. vat techniques) or retort sterilization. Randomly acquired human milk samples from three different milk banks ( n = 3 from each bank) were analyzed for macronutrient concentrations using a Fourier transform mid-infrared spectroscopy human milk analyzer. The concentrations of IgA, IgM, IgG, lactoferrin, lysozyme, α-lactalbumin, α antitrypsin, casein, and HMO were analyzed by mass spectrometry. The concentrations of protein and fat were significantly ( p < .05) less in the retort sterilized compared with the Holder and vat pasteurized samples, respectively. The concentrations of all immune-modulating proteins were significantly ( p < .05) less in the retort sterilized samples compared with vat and/or Holder pasteurized samples. The total HMO concentration and HMOs containing fucose, sialic acid, and nonfucosylated neutral sugars were significantly ( p < .05) less in retort sterilized compared with Holder pasteurized samples. Random milk samples that had undergone retort sterilization had significantly less immune-protective proteins and total and specific HMOs compared with samples that had undergone Holder and vat pasteurization. These data suggest that further analysis of the effect of retort sterilization on human milk components is needed prior to widespread adoption of this process.

Large submarine sand waves and gravel lag substrates on Georges Bank off Atlantic Canada

USGS Publications Warehouse

Todd, B.J.; Valentine, Page C.; Harris, Peter T; Baker, E.K.

2012-01-01

Georges Bank is a large, shallow, continental shelf feature offshore of New England and Atlantic Canada. The bank is mantled with a veneer of glacial debris transported during the late Pleistocene from continental areas lying to the north. These sediments were reworked by marine processes during postglacial sea-level transgression and continue to be modified by the modern oceanic regime. The surficial geology of the Canadian portion of the bank is a widespread gravel lag overlain in places by well sorted sand occurring as bedforms. The most widespread bedforms are large, mobile, asymmetrical sand waves up to 19 m in height formed through sediment transport by strong tidal-driven and possibly storm-driven currents. Well-defined curvilinear bedform crests up to 15 km long form a complex bifurcating pattern having an overall southwest–northeast strike, which is normal to the direction of the major axis of the semidiurnal tidal current ellipse. Minor fields of immobile, symmetrical sand waves are situated in bathymetric lows. Rare mobile, asymmetrical barchan dunes are lying on the gravel lag in areas of low sand supply. On Georges Bank, the management of resources and habitats requires an understanding of the distribution of substrate types, their surface dynamics and susceptibility to movement, and their associated fauna.

MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data.

PubMed

Zou, Dong; Sun, Shixiang; Li, Rujiao; Liu, Jiang; Zhang, Jing; Zhang, Zhang

2015-01-01

DNA methylation plays crucial roles during embryonic development. Here we present MethBank (http://dnamethylome.org), a DNA methylome programming database that integrates the genome-wide single-base nucleotide methylomes of gametes and early embryos in different model organisms. Unlike extant relevant databases, MethBank incorporates the whole-genome single-base-resolution methylomes of gametes and early embryos at multiple different developmental stages in zebrafish and mouse. MethBank allows users to retrieve methylation levels, differentially methylated regions, CpG islands, gene expression profiles and genetic polymorphisms for a specific gene or genomic region. Moreover, it offers a methylome browser that is capable of visualizing high-resolution DNA methylation profiles as well as other related data in an interactive manner and thus is of great helpfulness for users to investigate methylation patterns and changes of gametes and early embryos at different developmental stages. Ongoing efforts are focused on incorporation of methylomes and related data from other organisms. Together, MethBank features integration and visualization of high-resolution DNA methylation data as well as other related data, enabling identification of potential DNA methylation signatures in different developmental stages and accordingly providing an important resource for the epigenetic and developmental studies. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

The spatial distribution and temporal variation of desert riparian forests and their influencing factors in the downstream Heihe River basin, China

NASA Astrophysics Data System (ADS)

Ding, Jingyi; Zhao, Wenwu; Daryanto, Stefani; Wang, Lixin; Fan, Hao; Feng, Qiang; Wang, Yaping

2017-05-01

Desert riparian forests are the main restored vegetation community in Heihe River basin. They provide critical habitats and a variety of ecosystem services in this arid environment. Since desert riparian forests are also sensitive to disturbance, examining the spatial distribution and temporal variation of these forests and their influencing factors is important to determine the limiting factors of vegetation recovery after long-term restoration. In this study, field experiment and remote sensing data were used to determine the spatial distribution and temporal variation of desert riparian forests and their relationship with the environmental factors. We classified five types of vegetation communities at different distances from the river channel. Community coverage and diversity formed a bimodal pattern, peaking at the distances of 1000 and 3000 m from the river channel. In general, the temporal normalized difference vegetation index (NDVI) trend from 2000 to 2014 was positive at different distances from the river channel, except for the region closest to the river bank (i.e. within 500 m from the river channel), which had been undergoing degradation since 2011. The spatial distribution of desert riparian forests was mainly influenced by the spatial heterogeneity of soil properties (e.g. soil moisture, bulk density and soil particle composition). Meanwhile, while the temporal variation of vegetation was affected by both the spatial heterogeneity of soil properties (e.g. soil moisture and soil particle composition) and to a lesser extent, the temporal variation of water availability (e.g. annual average and variability of groundwater, soil moisture and runoff). Since surface (0-30 cm) and deep (100-200 cm) soil moisture, bulk density and the annual average of soil moisture at 100 cm obtained from the remote sensing data were regarded as major determining factors of community distribution and temporal variation, conservation measures that protect the soil structure and prevent soil moisture depletion (e.g. artificial soil cover and water conveyance channels) were suggested to better protect desert riparian forests under climate change and intensive human disturbance.

A velocimetric survey of the Lower Missouri River from river mile 492.38 to 290.20, July-October 2011 and July 2012

USGS Publications Warehouse

Armstrong, Daniel J.; Wilkison, Donald H.; Norman, Richard D.

2014-01-01

Of the July 2012 synoptic velocimetric surveys, velocities near St. Joseph, Missouri, indicated no longitudinal trends in the main-channel, near-bed, near-bank, and whole-river velocities. The Kansas City and Waverly synoptic velocimetric surveys indicated a general decrease in these velocities proceeding downstream. For all 2012 surveys, near-bed velocity was closest in magnitude to Winriver II mean velocity and near-bed and whole-river velocities decreased with increasing channel area. For the entire study, variations in near-bank velocity may have been due to the influence of channel structures and their diversion of higher velocities away from the channel edges.

NASA's Software Bank (NETS)

NASA Technical Reports Server (NTRS)

1992-01-01

NETS (A Neural Network Development Tool) is a software system for mimicking the human brain. It is used in a University of Arkansas project in pattern matching of chemical systems. If successful, chemists would be able to identify mixtures of compounds without long and costly separation procedures. Using NETS, the group has trained the computer to recognize pattern relationships in a known compound and associate the results to an unknown compound. The research appears to be promising.

Body Temperature Patterns and Rhythmicity in Free-Ranging Subterranean Damaraland Mole-Rats, Fukomys damarensis

PubMed Central

Streicher, Sonja; Boyles, Justin G.; Oosthuizen, Maria K.; Bennett, Nigel C.

2011-01-01

Body temperature (Tb) is an important physiological component that affects endotherms from the cellular to whole organism level, but measurements of Tb in the field have been noticeably skewed towards heterothermic species and seasonal comparisons are largely lacking. Thus, we investigated patterns of Tb patterns in a homeothermic, free-ranging small mammal, the Damaraland mole-rat (Fukomys damarensis) during both the summer and winter. Variation in Tb was significantly greater during winter than summer, and greater among males than females. Interestingly, body mass had only a small effect on variation in Tb and there was no consistent pattern relating ambient temperature to variation in Tb. Generally speaking, it appears that variation in Tb patterns varies between seasons in much the same way as in heterothermic species, just to a lesser degree. Both cosinor analysis and Fast Fourier Transform analysis revealed substantial individual variation in Tb rhythms, even within a single colony. Some individuals had no Tb rhythms, while others appeared to exhibit multiple rhythms. These data corroborate previous laboratory work showing multiplicity of rhythms in mole-rats and suggest the variation seen in the laboratory is a true indicator of the variation seen in the wild. PMID:22028861

Device for detecting imminent failure of high-dielectric stress capacitors. [Patent application

DOEpatents

McDuff, G.G.

1980-11-05

A device is described for detecting imminent failure of a high-dielectric stress capacitor utilizing circuitry for detecting pulse width variations and pulse magnitude variations. Inexpensive microprocessor circuitry is utilized to make numerical calculations of digital data supplied by detection circuitry for comparison of pulse width data and magnitude data to determine if preselected ranges have been exceeded, thereby indicating imminent failure of a capacitor. Detection circuitry may be incorporated in transmission lines, pulse power circuitry, including laser pulse circuitry or any circuitry where capacitors or capacitor banks are utilized.

Device for detecting imminent failure of high-dielectric stress capacitors

DOEpatents

McDuff, George G.

1982-01-01

A device for detecting imminent failure of a high-dielectric stress capacitor utilizing circuitry for detecting pulse width variations and pulse magnitude variations. Inexpensive microprocessor circuitry is utilized to make numerical calculations of digital data supplied by detection circuitry for comparison of pulse width data and magnitude data to determine if preselected ranges have been exceeded, thereby indicating imminent failure of a capacitor. Detection circuitry may be incorporated in transmission lines, pulse power circuitry, including laser pulse circuitry or any circuitry where capacitors or capactior banks are utilized.

Idea Bank: I Can't Do That! Improvisation for Classically Trained Musicians

ERIC Educational Resources Information Center

Buonviri, Nathan

2013-01-01

The Partnership for 21st Century Skills lists among its top priorities for students the development of "learning and innovation skills," of which the first are "creativity and innovation." The third National Standard from the National Association for Music Education is "Improvising melodies, variations, and accompaniments." These guiding…

The Sociolinguistic Complexity of Quasi-Isolated Southern Coastal Communities.

ERIC Educational Resources Information Center

Wolfram, Walt; And Others

A sociolinguistic study of Ocracoke, an island community in North Carolina's Outer Banks, investigated the social dynamics of language change and variation. Data were gathered in interviews with 43 island residents aged 12-82, most of whose families have been on the island for several generations. Several major sociolinguistic issues were…

Genetic structure and gene flow in Beta vulgaris subspecies maritima along the Atlantic coast of France

USDA-ARS?s Scientific Manuscript database

Locating and quantifying genetic variation within crop wild relatives is an ongoing activity of gene banks tasked with ex situ conservation. Without detailed information about the population genetics of a species geography often serves as a reasonable proxy for differentiation. With this in mind, ...

Environmental effects on the shape variation of male ultraviolet patterns in the Brimstone butterfly ( Gonepteryx rhamni, Pieridae, Lepidoptera)

NASA Astrophysics Data System (ADS)

Pecháček, Pavel; Stella, David; Keil, Petr; Kleisner, Karel

2014-12-01

The males of the Brimstone butterfly ( Gonepteryx rhamni) have ultraviolet pattern on the dorsal surfaces of their wings. Using geometric morphometrics, we have analysed correlations between environmental variables (climate, productivity) and shape variability of the ultraviolet pattern and the forewing in 110 male specimens of G. rhamni collected in the Palaearctic zone. To start with, we subjected the environmental variables to principal component analysis (PCA). The first PCA axis (precipitation, temperature, latitude) significantly correlated with shape variation of the ultraviolet patterns across the Palaearctic. Additionally, we have performed two-block partial least squares (PLS) analysis to assess co-variation between intraspecific shape variation and the variation of 11 environmental variables. The first PLS axis explained 93 % of variability and represented the effect of precipitation, temperature and latitude. Along this axis, we observed a systematic increase in the relative area of ultraviolet colouration with increasing temperature and precipitation and decreasing latitude. We conclude that the shape variation of ultraviolet patterns on the forewings of male Brimstones is correlated with large-scale environmental factors.

Global health inequalities and breast cancer: an impending public health problem for developing countries.

PubMed

Igene, Helen

2008-01-01

The aim of the study was to provide information on the global health inequality pattern produced by the increasing incidence of breast cancer and its relationship with the health expenditure of developing countries with emphasis on sub-Saharan Africa. It examines the difference between the health expenditure of developed and developing countries, and how this affects breast cancer incidence and mortality. The data collected from the World Health Organization and World Bank were examined, using bivariate analysis, through scatter-plots and Pearson's product moment correlation coefficient. Multivariate analysis was carried out by multiple regression analysis. National income, health expenditure affects breast cancer incidence, particularly between the developed and developing countries. However, these factors do not adequately explain variations in mortality rates. The study reveals the risk posed to developing countries to solving the present and predicted burden of breast cancer, currently characterized by late presentation, inadequate health care systems, and high mortality. Findings from this study contribute to the knowledge of the burden of disease in developing countries, especially sub-Saharan Africa, and how that is related to globalization and health inequalities.

Color banding on Georges Bank as viewed by coastal zone color scanner

NASA Technical Reports Server (NTRS)

Yentsch, C. S.; Phinney, D. A.; Campbell, J. W.

1994-01-01

Observations of Georges Bank by coastal zone color scanner (CZCS) show bandlike patterns that appear to be related to the large sand dunes and ridges which dominate the bottom topography there. Ship measurements of temperature and chlorophyll on Georges Bank in July 1979 also reflect the influence of the underwater dune fields. The cause of the banding in the CZCS data is unknown but is speculated to be the creation of alternating zones of divergence and convergence by tidal currents as the water flows over the underwater dune-trough configuration. The banding observed by CZCS appears to be seasonal, following the sequence of primary production in the Gulf of Maine, and is believed to be important to biological processes as a site of new production and/or as an effective transport mechanism. Any future models that attempt to interrelate tidal mixing and primary production must consider bottom topography and secondary flows.

Using a Numerical Model to Assess the Geomorphic Impacts of Forest Management Scenarios on Streams

NASA Astrophysics Data System (ADS)

Davidson, S. L.; Eaton, B. C.

2014-12-01

In-stream large wood governs the morphology of many small to intermediate streams, while riparian vegetation influences bank strength and channel pattern. Forest management practices such as harvesting and fire suppression therefore dramatically influence channel processes and associated aquatic habitat. The primary objective of this research is to compare the impacts of three common forest scenarios - natural fire disturbance, forest harvesting with a riparian buffer, and fire suppression - on the volume of in-channel wood and the complexity of aquatic habitat in channels at a range of scales. Each scenario is explored through Monte Carlo simulations run over a period of 1000 years using a numerical reach scale channel simulator (RSCS), with variations in tree toppling rate and forest density used to represent each forest management trajectory. The habitat complexity associated with each scenario is assessed based on the area of the bed occupied by pools and spawning sized sediment, the availability of wood cover, and the probability of avulsion. Within the fire scenario, we also use the model to separately investigate the effects of root decay and recovery on equilibrium channel geometry by varying the rooting depth and associated bank strength through time. The results show that wood loading and habitat complexity are influenced by the timing and magnitude of wood recruitment, as well as channel scale. The forest harvesting scenario produces the lowest wood loads and habitat complexity so long as the buffer width is less than the average mature tree height. The natural fire cycle produces the greatest wood loading and habitat complexity, but also the greatest variability because these streams experience significant periods without wood recruitment as forests regenerate. In reaches that experience recurrent fires, width increases in the post-fire period as roots decay, at times producing a change in channel pattern when a threshold width to depth ratio is exceeded, and decreases as the forest regenerates. In all cases, the effects are greatest in small to intermediate sized streams where wood is the dominant driver of channel morphology, and become negligible in large streams governed by fluvial processes.

Evolutionary stasis in pollen morphogenesis due to natural selection.

PubMed

Matamoro-Vidal, Alexis; Prieu, Charlotte; Furness, Carol A; Albert, Béatrice; Gouyon, Pierre-Henri

2016-01-01

The contribution of developmental constraints and selective forces to the determination of evolutionary patterns is an important and unsolved question. We test whether the long-term evolutionary stasis observed for pollen morphogenesis (microsporogenesis) in eudicots is due to developmental constraints or to selection on a morphological trait shaped by microsporogenesis: the equatorial aperture pattern. Most eudicots have three equatorial apertures but several taxa have independently lost the equatorial pattern and have microsporogenesis decoupled from aperture pattern determination. If selection on the equatorial pattern limits variation, we expect to see increased variation in microsporogenesis in the nonequatorial clades. Variation of microsporogenesis was studied using phylogenetic comparative analyses in 83 species dispersed throughout eudicots including species with and without equatorial apertures. The species that have lost the equatorial pattern have highly variable microsporogenesis at the intra-individual and inter-specific levels regardless of their pollen morphology, whereas microsporogenesis remains stable in species with the equatorial pattern. The observed burst of variation upon loss of equatorial apertures shows that there are no strong developmental constraints precluding variation in microsporogenesis, and that the stasis is likely to be due principally to selective pressure acting on pollen morphogenesis because of its implication in the determination of the equatorial aperture pattern. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Model of an axially strained weakly guiding optical fiber modal pattern

NASA Technical Reports Server (NTRS)

Egalon, Claudio O.; Rogowski, Robert S.

1991-01-01

Axial strain may be determined by monitoring the modal pattern variation of an optical fiber. In this paper we present the results of a numerical model that has been developed to calculate the modal pattern variation at the end of a weakly guiding optical fiber under axial strain. Whenever an optical fiber is under stress, the optical path length, the index of refraction and the propagation constants of each fiber mode change. In consequence, the modal phase term of the fields and the fiber output pattern are also modified. For multimode fibers, very complicated patterns result. The predicted patterns are presented, and an expression for the phase variation with strain is derived.

Historical trends in salinity and substrate in central Florida Bay: A paleoecological reconstruction using modern analogue data

USGS Publications Warehouse

Brewster-Wingard, G. L.; Ishman, S.E.

1999-01-01

Understanding the natural spatial and temporal variability that exists within an ecosystem is a critical component of efforts to restore systems to their natural state. Analysis of benthic foraminifers and molluscs from modern monitoring sites within Florida Bay allows us to determine what environmental parameters control spatial and temporal variability of their assemblages. Faunal assemblages associated with specific environmental parameters, including salinity and substrate, serve as proxies for an interpretation of paleoecologic data. The faunal record preserved in two shallow (< 2 m) cores in central Florida Bay (Russell Bank and Bob Allen Bank) provides a record of historical trends in environmental parameters for those sites. Analysis of these two cores has revealed two distinct patterns of salinity change at these sites: 1) a long-term trend of slightly increasing average salinity; and 2) a relatively rapid change to salinity fluctuations of greater frequency and amplitude, beginning around the turn of the century and becoming most pronounced after 1940. The degree of variability in substrate types at each locality limits interpretations of substrate trends to specific sites. A common sequence of change is present in the Russell Bank and Bob Allen Bank cores: from mixed grass and bare-sediment indicators at the bottom of the cores, to bare-sediment dwellers in the center, to a dominance of vegetative-cover indicators at the top of the cores. Changes in interpreted salinity patterns around the turn of the century are consistent with the timing of the construction of the Flagler Railroad from 1905 to 1912, and the Tamiami Trail and the canal and levee systems between 1915 and 1928. Beginning around 1940, the changes in the frequency and amplitude of salinity fluctuations may be related to changes in water management practices, meteorologic events (frequent hurricanes coupled with severe droughts in 1943 and 1944), or a combination of factors. The correspondence of these changes in Florida Bay with changes in the terrestrial Everglades suggests factors affecting the entire ecosystem are responsible for the salinity and substrate patterns seen in Florida Bay.

Planform Dynamics of a Mixed Bedrock-Alluvial Meandering River

NASA Astrophysics Data System (ADS)

Rhoads, B. L.; Konsoer, K. M.; Best, J.; Garcia, M. H.; Abad, J. D.

2013-12-01

The planform evolution of meandering rivers involves dynamic interactions among planform geometry, three-dimensional flow structure, bed morphology, sediment transport, and bank resistance. Modes of interaction among these factors in different types of bends have yet to be completely determined. This paper examines flow structure, bed morphology, and planform evolution in three different types of bends on the Wabash River, Illinois: an elongated loop with forested banks and extensive bedrock at the downstream end of the bend (Horseshoe Bend), an elongated loop with unforested banks and local bedrock control within the bend (Maier Bend), and a series of simple bends with forested banks and no bedrock control. Data consist of velocity measurements obtained between May 2011 and February 2013 for bankfull or near-bankfull flows using acoustic Doppler current profilers. Rates of migration and planform evolution were determined through GIS-based analysis of historical aerial photography from 1938 to present, including annual photos in recent years. Lidar data, sediment samples, and multi-beam echosounding data provide information on bed morphology, on the spatial extent of bedrock, and on bank materials. Horseshoe Bend has not moved substantially over the historical period of record. This lack of migration is in part related to extensive bedrock control, but also reflects high near-bank flow resistance produced by LWD and the relatively high resistance of bank materials to erosion. At Maier Bend, migration rates are high due to low resistance of bank materials to erosion, resulting in bend extension; however, the pattern of extension has been strongly influenced by the local outcropping of bedrock into the channel. In the simple bends, planform evolution has been dominated by translation, despite migration of the channel into forested sections of the floodplain. Bed morphology in these bends, especially the structure of point bars, strongly influences flow structure, resulting in high velocities near the outer bank well downstream of the bend apex. The results show that bedrock control can have an important influence on the planform evolution of mixed alluvial-bedrock rivers, yet also highlight the substantive effects of planform geometry, bed morphology, and bank resistance on bend development in these types of rivers.

Wavelet Analyses of Oil Prices, USD Variations and Impact on Logistics

NASA Astrophysics Data System (ADS)

Melek, M.; Tokgozlu, A.; Aslan, Z.

2009-07-01

This paper is related with temporal variations of historical oil prices and Dollar and Euro in Turkey. Daily data based on OECD and Central Bank of Turkey records beginning from 1946 has been considered. 1D-continuous wavelets and wavelet packets analysis techniques have been applied on data. Wavelet techniques help to detect abrupt changing's, increasing and decreasing trends of data. Estimation of variables has been presented by using linear regression estimation techniques. The results of this study have been compared with the small and large scale effects. Transportation costs of track show a similar variation with fuel prices. The second part of the paper is related with estimation of imports, exports, costs, total number of vehicles and annual variations by considering temporal variation of oil prices and Dollar currency in Turkey. Wavelet techniques offer a user friendly methodology to interpret some local effects on increasing trend of imports and exports data.

On the patterns and processes of wood in northern California streams

NASA Astrophysics Data System (ADS)

Benda, Lee; Bigelow, Paul

2014-03-01

Forest management and stream habitat can be improved by clarifying the primary riparian and geomorphic controls on streams. To this end, we evaluated the recruitment, storage, transport, and the function of wood in 95 km of streams (most drainage areas < 30 km2) in northern California, crossing four coastal to inland regions with different histories of forest management (managed, less-managed, unmanaged). The dominant source of variability in stream wood storage and recruitment is driven by local variation in rates of bank erosion, forest mortality, and mass wasting. These processes are controlled by changes in watershed structure, including the location of canyons, floodplains and tributary confluences; types of geology and topography; and forest types and management history. Average wood storage volumes in coastal streams are 5 to 20 times greater than inland sites primarily from higher riparian forest biomass and growth rates (productivity), with some influence by longer residence time of wood in streams and more wood from landsliding and logging sources. Wood recruitment by mortality (windthrow, disease, senescence) was substantial across all sites (mean 50%) followed by bank erosion (43%) and more locally by mass wasting (7%). The distances to sources of stream wood are controlled by recruitment process and tree height. Ninety percent of wood recruitment occurs within 10 to 35 m of channels in managed and less-managed forests and upward of 50 m in unmanaged Sequoia and coast redwood forests. Local landsliding extends the source distance. The recruitment of large wood pieces that create jams (mean diameter 0.7 m) is primarily by bank erosion in managed forests and by mortality in unmanaged forests. Formation of pools by wood is more frequent in streams with low stream power, indicating the further relevance of environmental context and watershed structure. Forest management influences stream wood dynamics, where smaller trees in managed forests often generate shorter distances to sources of stream wood, lower stream wood storage, and smaller diameter stream wood. These findings can be used to improve riparian protection and inform spatially explicit riparian management.

Change In Course Pattern Of The Teesta River: After Effect Of An Engineering Project

NASA Astrophysics Data System (ADS)

Ashrafi, Z. M.; Shuvo, S. D.; Mahmud, M. S.

2016-12-01

Bangladesh is blessed by rivers that contribute to country's agriculture, landscape development and water supply. Due to nature of the river's flow and morphology, several engineering project have been initiated to enhance its utility, Teesta barrage was one of them. After two decades of its construction in Northern Bangladesh, several study identified major impacts on local ecosystem due to hindrance in water flow. However, how Teesta River evolved in last 25 years after the barrage construction, has not been quantified yet. This study quantifies the downstream evolution of Teesta River in after-construction period (1990-2015). Time series earth observation satellite (Landsat) data and geo-spatial techniques have been utilized to understand the changes in course pattern. Besides, sinuosity index has been used to quantify it. Analysis shows that the river is becoming more braided with the rise of numerous `Char' areas (islands); as well as bifurcation of the main channel, creating newer channels increasingly. Statistically significant changes in Sinuosity Index (SI) of the Teesta river has found in post construction period. In some locations SI increased which indicate that the river is becoming more and more winding than straight it used to be around 1990. It is also found that the river is shifting towards the east where the number of human settlement is higher. The rate of shifting has accelerated during the 2000s. There are places where the course has moved about 3 kilometers from its earlier course. Therefore, higher number of human settlements are in threat of river bank erosion in recent years. River bank management should be developed considering the pattern of course change so that rural settlement can save from destructive river bank erosion.

The role of historical barriers in the diversification processes in open vegetation formations during the Miocene/Pliocene using an ancient rodent lineage as a model.

PubMed

Nascimento, Fabrícia F; Lazar, Ana; Menezes, Albert N; Durans, Andressa da Matta; Moreira, Jânio C; Salazar-Bravo, Jorge; D'Andrea, Paulo S; Bonvicino, Cibele R

2013-01-01

The Neotropics harbors a high diversity of species and several hypotheses have been proposed to account for this pattern. However, while species of forested domains are frequently studied, less is known of species from open vegetation formations occupying, altogether, a larger area than the Amazon Forest. Here we evaluate the role of historical barriers and the riverine hypothesis in the speciation patterns of small mammals by analyzing an ancient rodent lineage (Thrichomys, Hystricomorpha). Phylogenetic and biogeographic analyses were carried out with mitochondrial and nuclear DNA markers to analyze the evolutionary relationships between Thrichomys lineages occurring in dry domains along both banks of the Rio São Francisco. This river is one of the longest of South America whose course and water flow have been modified by inland tectonic activities and climate changes. Molecular data showed a higher number of lineages than previously described. The T. inermis species complex with 2n = 26, FN = 48 was observed in both banks of the river showing a paraphyletic arrangement, suggesting that river crossing had occurred, from east to west. A similar pattern was also observed for the T. apereoides complex. Thrichomys speciation occurred in Late Miocene when the river followed a different course. The current geographic distribution of Thrichomys species and their phylogenetic relationships suggested the existence of frequent past connections between both banks in the middle section of the Rio São Francisco. The extensive palaeodune region found in this area has been identified as a centre of endemism of several vertebrate species and is likely to be a center of Thrichomys diversification.

The Role of Historical Barriers in the Diversification Processes in Open Vegetation Formations during the Miocene/Pliocene Using an Ancient Rodent Lineage as a Model

PubMed Central

Nascimento, Fabrícia F.; Lazar, Ana; Menezes, Albert N.; Durans, Andressa da Matta; Moreira, Jânio C.; Salazar-Bravo, Jorge; D′Andrea, Paulo S.; Bonvicino, Cibele R.

2013-01-01

The Neotropics harbors a high diversity of species and several hypotheses have been proposed to account for this pattern. However, while species of forested domains are frequently studied, less is known of species from open vegetation formations occupying, altogether, a larger area than the Amazon Forest. Here we evaluate the role of historical barriers and the riverine hypothesis in the speciation patterns of small mammals by analyzing an ancient rodent lineage (Thrichomys, Hystricomorpha). Phylogenetic and biogeographic analyses were carried out with mitochondrial and nuclear DNA markers to analyze the evolutionary relationships between Thrichomys lineages occurring in dry domains along both banks of the Rio São Francisco. This river is one of the longest of South America whose course and water flow have been modified by inland tectonic activities and climate changes. Molecular data showed a higher number of lineages than previously described. The T. inermis species complex with 2n = 26, FN = 48 was observed in both banks of the river showing a paraphyletic arrangement, suggesting that river crossing had occurred, from east to west. A similar pattern was also observed for the T. apereoides complex. Thrichomys speciation occurred in Late Miocene when the river followed a different course. The current geographic distribution of Thrichomys species and their phylogenetic relationships suggested the existence of frequent past connections between both banks in the middle section of the Rio São Francisco. The extensive palaeodune region found in this area has been identified as a centre of endemism of several vertebrate species and is likely to be a center of Thrichomys diversification. PMID:24349576

Two unusual anatomic variations create a diagnostic dilemma in distal ulnar nerve compression.

PubMed

Kiehn, Mark W; Derrick, Allison J; Iskandar, Bermans J

2008-09-01

Diagnosis of peripheral neuropathies is based upon patterns of functional deficits and electrodiagnostic testing. However, anatomic variations can lead to confounding patterns of physical and electrodiagnostic findings. Authors present a case of ulnar nerve compression due to a rare combination of anatomic variations, aberrant branching pattern, and FCU insertion at the wrist, which posed a diagnostic and therapeutic dilemma. The literature related to isolated distal ulnar motor neuropathy and anatomic variations of the ulnar nerve and adjacent structures is also reviewed. This case demonstrates how anatomic variations can complicate the interpretation of clinical and electrodiagnostic findings and underscores the importance of thorough exploration of the nerve in consideration for possible variations. (c) 2008 Wiley-Liss, Inc.

Within-individual variation in bullfrog vocalizations: implications for a vocally mediated social recognition system.

PubMed

Bee, Mark A

2004-12-01

Acoustic signals provide a basis for social recognition in a wide range of animals. Few studies, however, have attempted to relate the patterns of individual variation in signals to behavioral discrimination thresholds used by receivers to discriminate among individuals. North American bullfrogs (Rana catesbeiana) discriminate among familiar and unfamiliar individuals based on individual variation in advertisement calls. The sources, patterns, and magnitudes of variation in eight acoustic properties of multiple-note advertisement calls were examined to understand how patterns of within-individual variation might either constrain, or provide additional cues for, vocal recognition. Six of eight acoustic properties exhibited significant note-to-note variation within multiple-note calls. Despite this source of within-individual variation, all call properties varied significantly among individuals, and multivariate analyses indicated that call notes were individually distinct. Fine-temporal and spectral call properties exhibited less within-individual variation compared to gross-temporal properties and contributed most toward statistically distinguishing among individuals. Among-individual differences in the patterns of within-individual variation in some properties suggest that within-individual variation could also function as a recognition cue. The distributions of among-individual and within-individual differences were used to generate hypotheses about the expected behavioral discrimination thresholds of receivers.

Soil seed-bank composition reveals the land-use history of calcareous grasslands

NASA Astrophysics Data System (ADS)

Karlík, Petr; Poschlod, Peter

2014-07-01

We compared soil seed banks and vegetation of recent (established on abandoned arable fields) and ancient (continuously managed as pastures at least since 1830) calcareous grasslands if there is any impact of former arable field use. The study was carried out in two regions of Southern Germany with well-preserved dry grassland vegetation: the western Jurassic mountains (Kaltes Feld) and the climatically drier eastern part of Southern Germany (Kallmünz). Total number of species in the seed bank was similar in both regions, but species composition partly differed, reflecting phytogeographical differences between the regions. The total number of emerged seedlings showed a large disparity (5457 compared to 2523 seedlings/m2 in Kaltes Feld and Kallmünz, respectively). Though there were differences in seed bank composition and size, we found a uniform pattern of plant traits (affiliation to phytosociological groups, Raunkiaer plant life-forms and seed longevity), which depended on the age of the grassland. The main conclusion is that seed banks in contemporary calcareous grasslands still reflect the history of former land use - in this case arable cultivation, even though it occurred a long time ago (up to 150 years). Indicators of former arable fields are germinable seeds of weeds which have persisted in the soil to the present. By contrast, weedy species are completely absent from the seed banks of ancient grasslands. Soil seed banks of recent grasslands may be of substantial conservation importance because they may store seeds of rare and endangered weed species such as Kickxia spuria, Silene noctiflora and Stachys annua, the majority of which have already gone extinct from the current vegetation of the study sites.

Development of a PROMIS item bank to measure pain interference.

PubMed

Amtmann, Dagmar; Cook, Karon F; Jensen, Mark P; Chen, Wen-Hung; Choi, Seung; Revicki, Dennis; Cella, David; Rothrock, Nan; Keefe, Francis; Callahan, Leigh; Lai, Jin-Shei

2010-07-01

This paper describes the psychometric properties of the PROMIS-pain interference (PROMIS-PI) bank. An initial candidate item pool (n=644) was developed and evaluated based on the review of existing instruments, interviews with patients, and consultation with pain experts. From this pool, a candidate item bank of 56 items was selected and responses to the items were collected from large community and clinical samples. A total of 14,848 participants responded to all or a subset of candidate items. The responses were calibrated using an item response theory (IRT) model. A final 41-item bank was evaluated with respect to IRT assumptions, model fit, differential item function (DIF), precision, and construct and concurrent validity. Items of the revised bank had good fit to the IRT model (CFI and NNFI/TLI ranged from 0.974 to 0.997), and the data were strongly unidimensional (e.g., ratio of first and second eigenvalue=35). Nine items exhibited statistically significant DIF. However, adjusting for DIF had little practical impact on score estimates and the items were retained without modifying scoring. Scores provided substantial information across levels of pain; for scores in the T-score range 50-80, the reliability was equivalent to 0.96-0.99. Patterns of correlations with other health outcomes supported the construct validity of the item bank. The scores discriminated among persons with different numbers of chronic conditions, disabling conditions, levels of self-reported health, and pain intensity (p<0.0001). The results indicated that the PROMIS-PI items constitute a psychometrically sound bank. Computerized adaptive testing and short forms are available. Copyright 2010 International Association for the Study of Pain. All rights reserved.

Cranial and mandibular shape variation in the genus Carollia (Mammalia: Chiroptera) from Colombia: biogeographic patterns and morphological modularity.

PubMed

López-Aguirre, Camilo; Pérez-Torres, Jairo; Wilson, Laura A B

2015-01-01

Neotropical bats of the genus Carollia are widely studied due to their abundance, distribution and relevance for ecosystems. However, the ecomorphological boundaries of these species are poorly differentiated, and consequently correspondence between their geographic distribution, ecological plasticity and morphological variation remains unclear. In this study, patterns of cranial and mandibular morphological variation were assessed for Carollia brevicauda, C. castanea and C. perspicillata from Colombia. Using geometric morphometrics, morphological variation was examined with respect to: differences in intraspecific variation, morphological modularity and integration, and biogeographic patterns. Patterns of intraspecific variation were different for each species in both cranial and mandibular morphology, with functional differences apparent according to diet. Cranial modularity varied between species whereas mandibular modularity did not. High cranial and mandibular correlation reflects Cranium-Mandible integration as a functional unit. Similarity between the biogeographic patterns in C. brevicauda and C. perspicillata indicates that the Andes do not act as a barrier but rather as an independent region, isolating the morphology of Andean populations of larger-bodied species. The biogeographic pattern for C. castanea was not associated with the physiography of the Andes, suggesting that large body size does not benefit C. brevicauda and C. perspicillata in maintaining homogeneous morphologies among populations.

Cranial and mandibular shape variation in the genus Carollia (Mammalia: Chiroptera) from Colombia: biogeographic patterns and morphological modularity

PubMed Central

Pérez-Torres, Jairo; Wilson, Laura A. B.

2015-01-01

Neotropical bats of the genus Carollia are widely studied due to their abundance, distribution and relevance for ecosystems. However, the ecomorphological boundaries of these species are poorly differentiated, and consequently correspondence between their geographic distribution, ecological plasticity and morphological variation remains unclear. In this study, patterns of cranial and mandibular morphological variation were assessed for Carollia brevicauda, C. castanea and C. perspicillata from Colombia. Using geometric morphometrics, morphological variation was examined with respect to: differences in intraspecific variation, morphological modularity and integration, and biogeographic patterns. Patterns of intraspecific variation were different for each species in both cranial and mandibular morphology, with functional differences apparent according to diet. Cranial modularity varied between species whereas mandibular modularity did not. High cranial and mandibular correlation reflects Cranium-Mandible integration as a functional unit. Similarity between the biogeographic patterns in C. brevicauda and C. perspicillata indicates that the Andes do not act as a barrier but rather as an independent region, isolating the morphology of Andean populations of larger-bodied species. The biogeographic pattern for C. castanea was not associated with the physiography of the Andes, suggesting that large body size does not benefit C. brevicauda and C. perspicillata in maintaining homogeneous morphologies among populations. PMID:26413433

The study on the effect of pattern density distribution on the STI CMP process

NASA Astrophysics Data System (ADS)

Sub, Yoon Myung; Hian, Bernard Yap Tzen; Fong, Lee It; Anak, Philip Menit; Minhar, Ariffin Bin; Wui, Tan Kim; Kim, Melvin Phua Twang; Jin, Looi Hui; Min, Foo Thai

2017-08-01

The effects of pattern density on CMP characteristics were investigated using specially designed wafer for the characterization of pattern-dependencies in STI CMP [1]. The purpose of this study is to investigate the planarization behavior based on a direct STI CMP used in cerium (CeO2) based slurry system in terms of pattern density variation. The minimal design rule (DR) of 180nm generation technology node was adopted for the mask layout. The mask was successfully applied for evaluation of a cerium (CeO2) abrasive based direct STI CMP process. In this study, we described a planarization behavior of the loading-effects of pattern density variation which were characterized with layout pattern density and pitch variations using masks mentioned above. Furthermore, the characterizing pattern dependent on the variations of the dimensions and spacing features, in thickness remaining after CMP, were analyzed and evaluated. The goal was to establish a concept of library method which will be used to generate design rules reducing the probability of CMP-related failures. Details of the characterization were measured in various layouts showing different pattern density ranges and the effects of pattern density on STI CMP has been discussed in this paper.

Redox properties of transitional milk from mothers of preterm infants.

PubMed

Minić, Simeon; Ješić, Miloš; Đurović, Dijana; Miletić, Srdjan; Lugonja, Nikoleta; Marinković, Vesna; Nikolić-Kokić, Aleksandra; Spasić, Snežana; Vrvić, Miroslav M

2018-02-01

There is a discrepancy between the amount of transitional milk produced by mothers of preterm infants and the low capacity of premature infants to consume it. This milk can be used in milk banks, but previous studies found that there are large variations in the level of host-defence proteins in individual samples of milk from mothers of premature infants, which implies that large individual variations in antioxidative defence composition are also possible. Milk samples were collected from 20 healthy mothers of preterm infants. We determined the values for non-enzymatic antioxidative capacity parameters (oxygen radical absorbance capacity (ORAC)), static oxidation-reduction potential (ORP), activities of antioxidant defence enzymes and the amount of vitamin C in whole milk, skim and whey fractions of transitional milk. The main low-molecular-weight antioxidant in transitional milk is vitamin C and most of it is contained in whey. ORAC is higher in whole transitional milk than in skim milk and whey, and ORP is lower in whole transitional milk than that in skim milk and whey. Antioxidative enzyme activities are similar in all individual samples of transitional milk from mothers of preterm infants. Our results indicate that transitional milk of mothers of preterm infants shows slow individual variations in antioxidative defence composition; therefore, it can be used in human milk banks. © 2017 Paediatrics and Child Health Division (The Royal Australasian College of Physicians).

Body temperature patterns and rhythmicity in free-ranging subterranean Damaraland mole-rats, Fukomys damarensis.

PubMed

Streicher, Sonja; Boyles, Justin G; Oosthuizen, Maria K; Bennett, Nigel C

2011-01-01

Body temperature (T(b)) is an important physiological component that affects endotherms from the cellular to whole organism level, but measurements of T(b) in the field have been noticeably skewed towards heterothermic species and seasonal comparisons are largely lacking. Thus, we investigated patterns of T(b) patterns in a homeothermic, free-ranging small mammal, the Damaraland mole-rat (Fukomys damarensis) during both the summer and winter. Variation in T(b) was significantly greater during winter than summer, and greater among males than females. Interestingly, body mass had only a small effect on variation in T(b) and there was no consistent pattern relating ambient temperature to variation in T(b). Generally speaking, it appears that variation in T(b) patterns varies between seasons in much the same way as in heterothermic species, just to a lesser degree. Both cosinor analysis and Fast Fourier Transform analysis revealed substantial individual variation in T(b) rhythms, even within a single colony. Some individuals had no T(b) rhythms, while others appeared to exhibit multiple rhythms. These data corroborate previous laboratory work showing multiplicity of rhythms in mole-rats and suggest the variation seen in the laboratory is a true indicator of the variation seen in the wild.

Crustal structure and origin of the Eggvin Bank west of Jan Mayen, NE Atlantic

NASA Astrophysics Data System (ADS)

Tan, Pingchuan; Breivik, Asbjørn Johan; Trønnes, Reidar G.; Mjelde, Rolf; Azuma, Ryosuke; Eide, Sigurd

2017-01-01

The Eggvin Bank, located between the Jan Mayen Island and Greenland, is an unusually shallow area containing several submarine volcanic peaks, confined by two transforms on the Northern Kolbeinsey Ridge (NKR). We represent P and S wave velocity models for the Eggvin Bank based on an Ocean Bottom Seismometer profile collected in 2011, showing igneous crustal thickness variations from 8 km to 13 km. A 2-5 km increase is associated with two separate 20-30 km wide segments under the main seamounts. The oceanic crust has three layers: upper crust (L2A: 2.8-4.8 km/s), middle crust (L2B: 5.5-6.5 km/s), and lower crust (L3: 6.7-7.35 km/s). Both the thick layer 2(A/B) and the high ratio of layer 2(A/B) thickness to total crustal thickness indicate that secondary, intraplate magmatism built the seamounts of the Eggvin Bank. The seamount in the north where the crust is thickest has a flat top indicating subaerial exposure but is deeper than those with rounded tops in the south and is therefore probably older. Comparing lower crustal seismic velocity with crustal thickness also indicates that the degree of mantle melting may be higher in the north than in the south. An enriched mantle source presently feeds the NKR magmatism and probably influenced the Eggvin Bank development also at earlier times. To what extent the Eggvin Bank has been influenced by the Iceland plume is uncertain, both an enriched mantle component and elevated mantle temperature may have played a role at different times and locations.

Does the seed bank contribute to the build-up of a genetic extinction debt in the grassland perennial Campanula rotundifolia?

PubMed

Plue, Jan; Vandepitte, Katrien; Honnay, Olivier; Cousins, Sara A O

2017-09-01

Habitat fragmentation threatens global biodiversity. Many plant species persist in habitat fragments via persistent life cycle stages such as seed banks, generating a species extinction debt. Here, seed banks are hypothesized to cause a temporal delay in the expected loss of genetic variation, which can be referred to as a genetic extinction debt, as a possible mechanism behind species extinction debts. Fragmented grassland populations of Campanula rotundifolia were examined for evidence of a genetic extinction debt, investigating if the seed bank contributed to the extinction debt build-up. The genetic make-up of 15 above- and below-ground populations was analysed in relation to historical and current levels of habitat fragmentation, both separately and combined. Genetic diversity was highest in above-ground populations, though below-ground populations contained 8 % of unique alleles that were absent above-ground. Above-ground genetic diversity and composition were related to historical patch size and connectivity, but not current patch characteristics, suggesting the presence of a genetic extinction debt in the above-ground populations. No such relationships were found for the below-ground populations. Genetic diversity measures still showed a response to historical but not present landscape characteristics when combining genetic diversity of the above- and below-ground populations. The fragmented C. rotundifolia populations exhibited a genetic extinction debt. However, the role of the seed banks in the build-up of this extinction debt is probably small, since the limited, unique genetic diversity of the seed bank alone seems unable to counter the detrimental effects of habitat fragmentation on the population genetic structure of C. rotundifolia. © The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Genetic connectivity in scleractinian corals across the Northern Gulf of Mexico: oil/gas platforms, and relationship to the Flower Garden Banks.

PubMed

Sammarco, Paul W; Brazeau, Daniel A; Sinclair, James

2012-01-01

The 3,000 oil/gas structures currently deployed in the northern Gulf of Mexico (GOM) provide hard substratum for marine organisms in a region where such has been rare since the Holocene. The major exception to this are the Flower Garden Banks (FGB). Corals are known to have colonized oil/gas platforms around the FGB, facilitating biogeographic expansion. We ask the question, what are the patterns of genetic affinity in these coral populations. We sampled coral tissue from populations of two species occurring on oil and gas platforms: Madracis decactis (hermatype) and Tubastraea coccinea (invasive ahermatype). We sampled 28 platforms along four transects from 20 km offshore to the continental shelf edge off 1) Matagorda Island, TX; 2) Lake Sabine, TX; 3) Terrebonne Bay, LA; and 4) Mobile, AL. The entire population of M. decactis was sampled between depths of 5 m and 37 m. T. coccinea populations were sub-sampled. Genetic variation was assessed using the PCR-based Amplified Fragment Length Polymorphisms (AFLPs). Data were analyzed via AFLPOP and STRUCTURE. Genetic connectivity among M. decactis platform populations was highest near the FGB and decreased to the east. Connectivity increased again in the eastern sector, indicating isolation between the populations from different sides of the Mississippi River (Transects 3 and 4). A point-drop in genetic affinity (relatedness) at the shelf edge south of Terrebonne Bay, LA indicated a population differing from all others in the northern GOM. Genetic affinities among T. coccinea were highest in the west and decreased to the east. Very low genetic affinities off Mobile, AL indicated a dramatic difference between those populations and those west of the Mississippi River, apparently a formidable barrier to larval dispersal.

Temporal Patterns in the Abundance and Species Composition of Spiders on Host Plants of the Invasive Moth Epiphyas postvittana (Lepidoptera: Tortricidae).

PubMed

Hogg, Brian N; Mills, Nicholas J; Daane, Kent M

2017-06-01

Generalist predators such as spiders may help mitigate the spread and impact of exotic herbivores. The lack of prey specificity and long generation times of spiders may allow them to persist when pests are scarce, and to limit the growth of pest populations before they reach damaging levels. We examined whether resident spiders are likely to play a role in maintaining populations of the invasive light brown apple moth, Epiphyas postvittana (Walker) (Lepidoptera: Tortricidae), below outbreak levels in California. We surveyed the spider community on two E. postvittana host plants, the ornamental Australian tea tree, Leptospermum laevigatum, and the weed French broom, Genista monspessulana, to characterize spider and larval E. postvittana abundance and spider species composition throughout the year. Spider densities and species composition showed slight seasonal changes. Spiders were present during periods of high and low E. postvittana abundance. Anyphaenid hunting spiders, Anyphaena aperta Banks in Australian tea tree and Anyphaena pacifica Banks in French broom, dominated spider species composition at four of five sampled sites, and underwent only slight seasonal variation in abundance. Adult A. aperta were rare at all times of the year, suggesting that high mortality among juvenile A. aperta limits the potential of this species as a predator of E. postvittana. Nevertheless, the continued presence of spiders throughout the year indicates that the resident spider community is likely to play a key role in reducing E. postvittana populations in California. Published by Oxford University Press on behalf of Entomological Society of America 2017. This work is written by US Government employees and is in the public domain in the US.

Genetic Connectivity in Scleractinian Corals across the Northern Gulf of Mexico: Oil/Gas Platforms, and Relationship to the Flower Garden Banks

PubMed Central

Sammarco, Paul W.; Brazeau, Daniel A.; Sinclair, James

2012-01-01

The 3,000 oil/gas structures currently deployed in the northern Gulf of Mexico (GOM) provide hard substratum for marine organisms in a region where such has been rare since the Holocene. The major exception to this are the Flower Garden Banks (FGB). Corals are known to have colonized oil/gas platforms around the FGB, facilitating biogeographic expansion. We ask the question, what are the patterns of genetic affinity in these coral populations. We sampled coral tissue from populations of two species occurring on oil and gas platforms: Madracis decactis (hermatype) and Tubastraea coccinea (invasive ahermatype). We sampled 28 platforms along four transects from 20 km offshore to the continental shelf edge off 1) Matagorda Island, TX; 2) Lake Sabine, TX; 3) Terrebonne Bay, LA; and 4) Mobile, AL. The entire population of M. decactis was sampled between depths of 5 m and 37 m. T. coccinea populations were sub-sampled. Genetic variation was assessed using the PCR-based Amplified Fragment Length Polymorphisms (AFLPs). Data were analyzed via AFLPOP and STRUCTURE. Genetic connectivity among M. decactis platform populations was highest near the FGB and decreased to the east. Connectivity increased again in the eastern sector, indicating isolation between the populations from different sides of the Mississippi River (Transects 3 and 4). A point-drop in genetic affinity (relatedness) at the shelf edge south of Terrebonne Bay, LA indicated a population differing from all others in the northern GOM. Genetic affinities among T. coccinea were highest in the west and decreased to the east. Very low genetic affinities off Mobile, AL indicated a dramatic difference between those populations and those west of the Mississippi River, apparently a formidable barrier to larval dispersal. PMID:22558066

Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

PubMed Central

Supple, Megan A.; Hines, Heather M.; Dasmahapatra, Kanchon K.; Lewis, James J.; Nielsen, Dahlia M.; Lavoie, Christine; Ray, David A.; Salazar, Camilo; McMillan, W. Owen; Counterman, Brian A.

2013-01-01

Identifying the genetic changes driving adaptive variation in natural populations is key to understanding the origins of biodiversity. The mosaic of mimetic wing patterns in Heliconius butterflies makes an excellent system for exploring adaptive variation using next-generation sequencing. In this study, we use a combination of techniques to annotate the genomic interval modulating red color pattern variation, identify a narrow region responsible for adaptive divergence and convergence in Heliconius wing color patterns, and explore the evolutionary history of these adaptive alleles. We use whole genome resequencing from four hybrid zones between divergent color pattern races of Heliconius erato and two hybrid zones of the co-mimic Heliconius melpomene to examine genetic variation across 2.2 Mb of a partial reference sequence. In the intergenic region near optix, the gene previously shown to be responsible for the complex red pattern variation in Heliconius, population genetic analyses identify a shared 65-kb region of divergence that includes several sites perfectly associated with phenotype within each species. This region likely contains multiple cis-regulatory elements that control discrete expression domains of optix. The parallel signatures of genetic differentiation in H. erato and H. melpomene support a shared genetic architecture between the two distantly related co-mimics; however, phylogenetic analysis suggests mimetic patterns in each species evolved independently. Using a combination of next-generation sequencing analyses, we have refined our understanding of the genetic architecture of wing pattern variation in Heliconius and gained important insights into the evolution of novel adaptive phenotypes in natural populations. PMID:23674305

Caenorhabditis elegans vulval cell fate patterning

NASA Astrophysics Data System (ADS)

Félix, Marie-Anne

2012-08-01

The spatial patterning of three cell fates in a row of competent cells is exemplified by vulva development in the nematode Caenorhabditis elegans. The intercellular signaling network that underlies fate specification is well understood, yet quantitative aspects remain to be elucidated. Quantitative models of the network allow us to test the effect of parameter variation on the cell fate pattern output. Among the parameter sets that allow us to reach the wild-type pattern, two general developmental patterning mechanisms of the three fates can be found: sequential inductions and morphogen-based induction, the former being more robust to parameter variation. Experimentally, the vulval cell fate pattern is robust to stochastic and environmental challenges, and minor variants can be detected. The exception is the fate of the anterior cell, P3.p, which is sensitive to stochastic variation and spontaneous mutation, and is also evolving the fastest. Other vulval precursor cell fates can be affected by mutation, yet little natural variation can be found, suggesting stabilizing selection. Despite this fate pattern conservation, different Caenorhabditis species respond differently to perturbations of the system. In the quantitative models, different parameter sets can reconstitute their response to perturbation, suggesting that network variation among Caenorhabditis species may be quantitative. Network rewiring likely occurred at longer evolutionary scales.

[Effects of submarine topography and water depth on distribution of pelagic fish community in minnan-taiwan bank fishing ground].

PubMed

Fang, Shuimei; Yang, Shengyun; Zhang, Chengmao; Zhu, Jinfu

2002-11-01

According to the fishing record of the light-seine information vessel in Minnan-Taiwan bank ground during 1989 to 1999, the effects of submarine topography and water depth on distribution of pelagic fish community in Minnan-Taiwan bank fishing ground was studied. The results showed that the pelagic fish distributed concentratively, while the submarine topography and water depth varied widely, but in different fishing regions, the distribution of pelagic fishes was uneven. The distribution of fishing yield increased from north to south, and closed up from sides of the bank to south or north in the regions. Pelagic fish distributed mainly in mixed water in the southern Taiwan Strait, and in warm water in the Taiwan Strait. The central fishing grounds were at high salt regions. Close gathering regions of pelagic fish or central fishing ground would be varied with the seasonal variation of mixed water in the southern Taiwan Strait and warm water in the Taiwan Strait. Central fishing ground was not only related to submarine topography and water depth, but also related to wind direction, wind-power and various water systems. In the fishing ground, the gathering depth of pelagic fish was 30-60 m in spring and summer, and 40-80 m in autumn and winter.

Genomic Prediction and Association Mapping of Curd-Related Traits in Gene Bank Accessions of Cauliflower.

PubMed

Thorwarth, Patrick; Yousef, Eltohamy A A; Schmid, Karl J

2018-02-02

Genetic resources are an important source of genetic variation for plant breeding. Genome-wide association studies (GWAS) and genomic prediction greatly facilitate the analysis and utilization of useful genetic diversity for improving complex phenotypic traits in crop plants. We explored the potential of GWAS and genomic prediction for improving curd-related traits in cauliflower ( Brassica oleracea var. botrytis ) by combining 174 randomly selected cauliflower gene bank accessions from two different gene banks. The collection was genotyped with genotyping-by-sequencing (GBS) and phenotyped for six curd-related traits at two locations and three growing seasons. A GWAS analysis based on 120,693 single-nucleotide polymorphisms identified a total of 24 significant associations for curd-related traits. The potential for genomic prediction was assessed with a genomic best linear unbiased prediction model and BayesB. Prediction abilities ranged from 0.10 to 0.66 for different traits and did not differ between prediction methods. Imputation of missing genotypes only slightly improved prediction ability. Our results demonstrate that GWAS and genomic prediction in combination with GBS and phenotyping of highly heritable traits can be used to identify useful quantitative trait loci and genotypes among genetically diverse gene bank material for subsequent utilization as genetic resources in cauliflower breeding. Copyright © 2018 Thorwarth et al.

Continuity and Variation in Chinese Patterns of Socialization.

ERIC Educational Resources Information Center

Ho, David Y. F.

1989-01-01

Reviews literature on Chinese patterns of socialization. Discusses methodological issues with respect to continuity versus change through time, and variation across geographical locations, systematically considering variables of gender, age, and social class. Concludes that departures from traditional pattern in different locations are evident,…

Compressional velocities from multichannel refraction arrivals on Georges Bank: northwest Atlantic Ocean

USGS Publications Warehouse

McGinnis, L. D.; Otis, R. M.

1979-01-01

Velocities were obtained from unreversed, refracted arrivals on analog records from a 48‐channel, 3.6-km hydrophone cable (3.89 km from the airgun array to the last hydrophone array). Approximately 200 records were analyzed along 1500 km of ship track on Georges Bank, northwest Atlantic Ocean, to obtain regional sediment velocity distribution to a depth of 1.4 km below sea level. This technique provides nearly continuous coverage of refraction velocities and vertical velocity gradients. Because of the length of the hydrophone cable and the vertical velocity gradients, the technique is applicable only to the Continental Shelf and the shallower parts of the Continental Slope in water depths less than 300 m. Sediment diagenesis, the influence of overburden pressure on compaction, lithology, density, and porosity are inferred from these data. Velocities of the sediment near the water‐sediment interface range from less than 1500 m/sec on the north edge of Georges Bank to 1830 m/sec for glacial deposits in the northcentral part of the bank. Velocity gradients in the upper 400 m range from 1.0km/sec/km(sec−1) on the south edge of the bank to 1.7sec−1 on the north. Minimum gradients of 0.8sec−1 were observed south of Nantucket Island. Velocities and velocity gradients are explained in relation to physical properties of the Cretaceous, Tertiary, and Pleistocene sediments. Isovelocity contours at 100-m/sec intervals are nearly horizontal in the upper 400 m. Isovelocity contours at greater depths show a greater difference from a mean depth because of the greater structural and lithological variation. Bottom densities inferred from the velocities range from 1.7 to 1.9g/cm3 and porosities range from 48 to 62 percent. The most significant factor controlling velocity distribution on Georges Bank is overburden pressure and resulting compaction. From the velocity data we conclude that Georges Bank has been partially overridden by a continental ice sheet.

Spectroscopic vector analysis for fast pattern quality monitoring

NASA Astrophysics Data System (ADS)

Sohn, Younghoon; Ryu, Sungyoon; Lee, Chihoon; Yang, Yusin

2018-03-01

In semiconductor industry, fast and effective measurement of pattern variation has been key challenge for assuring massproduct quality. Pattern measurement techniques such as conventional CD-SEMs or Optical CDs have been extensively used, but these techniques are increasingly limited in terms of measurement throughput and time spent in modeling. In this paper we propose time effective pattern monitoring method through the direct spectrum-based approach. In this technique, a wavelength band sensitive to a specific pattern change is selected from spectroscopic ellipsometry signal scattered by pattern to be measured, and the amplitude and phase variation in the wavelength band are analyzed as a measurement index of the pattern change. This pattern change measurement technique is applied to several process steps and verified its applicability. Due to its fast and simple analysis, the methods can be adapted to the massive process variation monitoring maximizing measurement throughput.

Neighborhood binary speckle pattern for deformation measurements insensitive to local illumination variation by digital image correlation.

PubMed

Zhao, Jian; Yang, Ping; Zhao, Yue

2017-06-01

Speckle pattern-based characteristics of digital image correlation (DIC) restrict its application in engineering fields and nonlaboratory environments, since serious decorrelation effect occurs due to localized sudden illumination variation. A simple and efficient speckle pattern adjusting and optimizing approach presented in this paper is aimed at providing a novel speckle pattern robust enough to resist local illumination variation. The new speckle pattern, called neighborhood binary speckle pattern, derived from original speckle pattern, is obtained by means of thresholding the pixels of a neighborhood at its central pixel value and considering the result as a binary number. The efficiency of the proposed speckle pattern is evaluated in six experimental scenarios. Experiment results indicate that the DIC measurements based on neighborhood binary speckle pattern are able to provide reliable and accurate results, even though local brightness and contrast of the deformed images have been seriously changed. It is expected that the new speckle pattern will have more potential value in engineering applications.

Macrophyte presence is an indicator of enhanced denitrification and nitrification in sediments of a temperate restored agricultural stream

EPA Science Inventory

Stream macrophytes are often removed with their sediments to deepen stream channels, stabilize channel banks, or provide habitat for target species. These sediments may support enhanced nitrogen processing. To evaluate sediment nitrogen processing, identify seasonal patterns, and...

Subordinate Imitation of Supervisor Behavior: The Role of Supervisor Power and Subordinate Self-Esteem.

ERIC Educational Resources Information Center

Adler, Seymour

1983-01-01

Examined similarity in the behavior tendencies of subordinates and their supervisors. Respondents were 66 department heads and branch managers in an Israeli banking organization. The overall pattern of results largely supported the applicability of Social Learning Theory to organizational modeling. (JAC)

Energy Transfer to Upper Trophic Levels on a Small Offshore Bank

DTIC Science & Technology

2007-01-01

that generate feeding “ hotspots ” is essential to understanding their temporal variability, and whether good feeding conditions are limited by bottom...processes influencing patterns of biodiversity in the oceans) and with NOAA agency interests in the conservation of marine mammal populations. This

Seasonal variation in plasma lipids and lipases in young healthy humans.

PubMed

Cambras, Trinitat; Baena-Fustegueras, Juan A; Pardina, Eva; Ricart-Jané, David; Rossell, Joana; Díez-Noguera, Antoni; Peinado-Onsurbe, Julia

2017-01-01

Although intermediate metabolism is known to follow circadian rhythms, little information is available on the variation in lipase activities (lipoprotein and hepatic lipase, LPL and HL, respectively) and lipids throughout the year. In a cross-sectional study, we collected and analysed blood from 245 healthy students (110 men and 135 women) between 18 and 25 years old from the University of Barcelona throughout the annual campaign (March, May, October and December) of the blood bank. All subjects gave their written informed consent to participate. All blood samples were taken after breakfast at 8:00 and 11:00 am. Plasma glucose, total plasma protein, triacylglycerides (TAG), free fatty acids (FFA), free cholesterol and esterified cholesterol (FC and TC, respectively), cholesterol in low-density lipoproteins (cLDL), cholesterol in high-density lipoproteins (cHDL), phospholipids (PL) and lipase activities (LPL and HL) were determined. Cosinor analysis was used to evaluate the presence (significance of fit cosine curve to data and variance explained by rhythm) and characteristics of possible 12-month rhythms (acrophase, MESOR and amplitude). Statistically significant seasonal rhythms were detected for all the variables studied except proteins, with most of them peaking in the winter season. The lowest value for cLDL and the HL occurs in summer, while for cHDL and the LPL it is in winter. These findings demonstrate for the first time that in physiological conditions, plasma LPL and HL activities and lipids follow seasonal rhythms. The metabolic significance of this pattern is discussed.

Linkage Disequilibrium and Haplotype Diversity in the Genes of the Renin–Angiotensin System: Findings From the Family Blood Pressure Program

PubMed Central

Zhu, Xiaofeng; Yan, Denise; Cooper, Richard S.; Luke, Amy; Ikeda, Morna A.; Chang, Yen-Pei C.; Weder, Alan; Chakravarti, Aravinda

2003-01-01

Association studies of candidate genes with complex traits have generally used one or a few single nucleotide polymorphisms (SNPs), although variation in the extent of linkage disequilibrium (LD) within genes markedly influences the sensitivity and precision of association studies. The extent of LD and the underlying haplotype structure for most candidate genes are still unavailable. We sampled 193 blacks (African-Americans) and 160 whites (European-Americans) and estimated the intragenic LD and the haplotype structure in four genes of the renin–angiotensin system. We genotyped 25 SNPs, with all but one of the pairs spaced between 1 and 20 kb, thus providing resolution at small scale. The pattern of LD within a gene was very heterogeneous. Using a robust method to define haplotype blocks, blocks of limited haplotype diversity were identified at each locus; between these blocks, LD was lost owing to the history of recombination events. As anticipated, there was less LD among blacks, the number of haplotypes was substantially larger, and shorter haplotype segments were found, compared with whites. These findings have implications for candidate-gene association studies and indicate that variation between populations of European and African origin in haplotype diversity is characteristic of most genes. [The sequence data described in this paper are available in GenBank under the following accession nos: AGT, MIM 106150; Renin, MIM 179820; ACE, MIM 106180; Angiotensin receptor I, MIM 106165. Supplementary material is available online at http://www.genome.org.] PMID:12566395

Wave-driven spatial and temporal variability in sea-floor sediment mobility in the Monterey Bay, Cordell Bank, and Gulf of the Farallones National Marine Sanctuaries

USGS Publications Warehouse

Storlazzi, Curt D.; Reid, Jane A.; Golden, Nadine E.

2007-01-01

Wind and wave patterns affect many aspects of continental shelves and shorelines geomorphic evolution. Although our understanding of the processes controlling sediment suspension on continental shelves has improved over the past decade, our ability to predict sediment mobility over large spatial and temporal scales remains limited. The deployment of robust operational buoys along the U.S. West Coast in the early 1980s provides large quantities of high-resolution oceanographic and meteorologic data. By 2006, these data sets were long enough to clearly identify long-term trends and compute statistically significant probability estimates of wave and wind behavior during annual and interannual climatic cycles (that is, El Niño and La Niña). Wave-induced sediment mobility on the shelf and upper slope off central California was modeled using synthesized oceanographic and meteorologic data as boundary input for the Delft SWAN model, sea-floor grain-size data provided by the usSEABED database, and regional bathymetry. Differences in waves (heights, periods, and directions) and winds (speeds and directions) between El Niño and La Niña months cause temporal and spatial variations in peak wave-induced bed shear stresses. These variations, in conjunction with spatially heterogeneous unconsolidated sea-floor sedimentary cover, result in predicted sediment mobility widely varying in both time and space. These findings indicate that these factors have significant consequences for both geological and biological processes.

Glareosin: a novel sexually dimorphic urinary lipocalin in the bank vole, Myodes glareolus.

PubMed

Loxley, Grace M; Unsworth, Jennifer; Turton, Michael J; Jebb, Alexandra; Lilley, Kathryn S; Simpson, Deborah M; Rigden, Daniel J; Hurst, Jane L; Beynon, Robert J

2017-09-01

The urine of bank voles ( Myodes glareolus ) contains substantial quantities of a small protein that is expressed at much higher levels in males than females, and at higher levels in males in the breeding season. This protein was purified and completely sequenced at the protein level by mass spectrometry. Leucine/isoleucine ambiguity was completely resolved by metabolic labelling, monitoring the incorporation of dietary deuterated leucine into specific sites in the protein. The predicted mass of the sequenced protein was exactly consonant with the mass of the protein measured in bank vole urine samples, correcting for the formation of two disulfide bonds. The sequence of the protein revealed that it was a lipocalin related to aphrodisin and other odorant-binding proteins (OBPs), but differed from all OBPs previously described. The pattern of secretion in urine used for scent marking by male bank voles, and the similarity to other lipocalins used as chemical signals in rodents, suggest that this protein plays a role in male sexual and/or competitive communication. We propose the name glareosin for this novel protein to reflect the origin of the protein and to emphasize the distinction from known OBPs. © 2017 The Authors.

Seasonal variations in the stable carbon isotopic signature of biogenic methane in a coastal sediment

NASA Technical Reports Server (NTRS)

Martens, C. S.; Green, C. D.; Blair, N. E.; Des Marais, D. J.

1986-01-01

Systematic seasonal variations in the stable carbon isotopic signature of methane gas occur in the anoxic sediments of Cape Lookout Bight, a lagoonal basin on North Carolina's Outer Banks. Values for the carbon isotope ratio of methane range from -57.3 per mil during summer to -68.5 per mil during winter in gas bubbles with an average methane content of 95 percent. The variations are hypothesized to result from changes in the pathways of microbial methane production and cycling of key substrates including acetate and hydrogen. The use of stable isotopic signatures to investigate the global methane cycle through mass balance calculations, involving various sediment and soil biogenic sources, appears to require seasonally averaged data from individual sites.

Biomarker patterns in present-day vegetation: consistency and variation - A study on plaggen soils

NASA Astrophysics Data System (ADS)

Kirkels, Frédérique; Jansen, Boris; Kalbitz, Karsten

2013-04-01

Biomarker patterns in present-day vegetation are commonly used as proxies to reconstruct paleo-vegetation composition, land use history and to elucidate carbon cycling. Plaggen soils are formed by diverse vegetational inputs during century-long plaggen (i.e. sod) application associated with plaggen-agriculture on poor soils in north-western Europe. This resulted in remarkably stable organic matter. Plant source identification by biomarkers could provide insight in yet unknown stabilization mechanisms and the fate of organic matter upon ongoing land use change. The current rationale behind biomarker-based source identification is that patterns observed in present-day vegetation are generally representative with little random variation. However, our knowledge on variability and consistency of biomarker patterns is yet scarce. Therefore, to assess the applicability of biomarkers for source identification in plaggen soils, we analyzed published n-alkane and n-alcohol patterns of species and their various parts which contribute(d) input to plaggen soils. We considered shrubs, trees and grass species and evaluated rescaled patterns (i.e. relative abundances in chain-length range C17-36), odd-over-even predominance (OEP) and predominant n-alkanes. In addition, we explicitly looked into potential sources of systematic variation, e.g. spatial variation (climate, site conditions), temporal variation (seasonality, ontogeny) and laboratory methodology (extraction technique: washing/shaking, Soxhlet/ASE, saponification). We found meaningful clustering of n-alkanes C27, C29, C31 and C33, allowing for clear distinction of input by shrubs, trees and grasses to plaggen soils. Combination of these homologues with complete n-alkane patterns (C17-36) and OEP enabled further differentiation, while n-alcohols patterns were less distinct. Current limitation is the lack of extended and diverse quantitative records on biomarker patterns, especially for n-alcohols, non-leaf and belowground tissues, which hindered full statistical analysis. On species level we also recognized outliers and spreading. Systematic variation was indicated among tree species according to spatial conditions and by ontogeny. Yet, observed effects were ambiguous for other variation sources. This study highlights clear opportunities for application of biomarker patterns for source identification and elucidation of stabilization processes in (plaggen) soils. At the same time, application is challenged by systematic variation. Further research is key to quantify controls, magnitude and potential correction factors for such systematic variation. This would validate the use of n-alkane and n-alcohol patterns across broad spatial and temporal scales or identify boundaries wherein their consistency is ensured. Likely, these challenges apply to vegetation in a broad perspective, transcending plaggen vegetation, as assessment and application of present-day vegetation patterns is emerging.

Genetic constraints on wing pattern variation in Lycaeides butterflies: A case study on mapping complex, multifaceted traits in structured populations.

PubMed

Lucas, Lauren K; Nice, Chris C; Gompert, Zachariah

2018-03-13

Patterns of phenotypic variation within and among species can be shaped and constrained by trait genetic architecture. This is particularly true for complex traits, such as butterfly wing patterns, that consist of multiple elements. Understanding the genetics of complex trait variation across species boundaries is difficult, as it necessitates mapping in structured populations and can involve many loci with small or variable phenotypic effects. Here, we investigate the genetic architecture of complex wing pattern variation in Lycaeides butterflies as a case study of mapping multivariate traits in wild populations that include multiple nominal species or groups. We identify conserved modules of integrated wing pattern elements within populations and species. We show that trait covariances within modules have a genetic basis and thus represent genetic constraints that can channel evolution. Consistent with this, we find evidence that evolutionary changes in wing patterns among populations and species occur in the directions of genetic covariances within these groups. Thus, we show that genetic constraints affect patterns of biological diversity (wing pattern) in Lycaeides, and we provide an analytical template for similar work in other systems. © 2018 John Wiley & Sons Ltd.

Ecosystem history of southern and central Biscayne Bay; summary report on sediment core analyses

USGS Publications Warehouse

Wingard, G.L.; Cronin, T. M.; Dwyer, G.S.; Ishman, S.E.; Willard, D.A.; Holmes, C.W.; Bernhardt, C.E.; Williams, C.P.; Marot, M.E.; Murray, J.B.; Stamm, R.G.; Murray, J.H.; Budet, C.

2003-01-01

During the last century, the environs of Biscayne Bay have been greatly affected by anthropogenic alteration through urbanization of the Miami/Dade County area. The sources, timing, delivery, and quality of freshwater flow into the Bay have been changed by construction of a complex canal system that controls movement of water throughout south Florida. Changes in shoreline and sub-aquatic vegetation and marine organisms have been observed and changes in water delivery are believed to be the cause. Current restoration goals are attempting to restore natural flow of fresh water into Biscayne and Florida Bays and to restore the natural fauna and flora, but first we need to determine pre-alteration baseline conditions in order to establish targets and performance measures for restoration. This research is part of an ongoing study designed to address the needs of the Biscayne Bay Coastal Wetlands Project (BBCW) of the Comprehensive Everglades Restoration Plan (CERP). By establishing the natural patterns of temporal change in salinity, water quality, vegetation, and benthic fauna in Biscayne Bay and the nearby wetlands over the last 100- 500 years the USGS, in collaboration with our partners, will provide the data necessary to set realistic targets to achieve the BBCW Project goals. Six cores from three sites in Biscayne Bay were collected in April 2002 for multidisciplinary multi-proxy analyses. This report details the results of these analyses and compares the 2002 cores to cores collected in 1997. The following are our significant findings to date: ?\tThe salinity of central Biscayne Bay has become increasingly marine and increasingly stable over the last 100 years. o\tAt No Name Bank, prior to approximately 1915, the inter-decadal and decadal salinity fluctuations appear to have been greater than after 1915 when salinities stabilized at that site. o\tContinental shelf/open marine influence on the sites has increased during the 20th century. o\tThere is no indication of inter-decadal salinity extremes or periods of hypersalinity. o\tFreshwater and mesohaline salinities have had a minor influence on No Name bank throughout the time of deposition. At Featherbed Bank, the influence is reduced to mesohaline salinities. ?\tCard Bank has experienced relatively large swings in salinity over multi-decadal and centennial timescales, compared to central Biscayne Bay, but marine influence at the site has increased over the last century. ?\tIndications of regional scale patterns have been found, especially in the shell chemistry data and the pollen assemblages. These regional patterns indicate that the changes are not site specific and may not be limited to Biscayne Bay. ?\tSub-aquatic vegetation has undergone bay-wide patterns of change over the last 200-500 years, which includes expansion prior to 1900 and declines during the last century in central Biscayne Bay. o\tThalassia appears to have increased at all three core sites sometime between 1550 and 1750 AD. o\tA decline in Thalassia appears to have occurred after 1950 at No Name Bank and slightly earlier in the 20th century at Featherbed Bank. o\tCard Bank does not appear to have experienced any declines in vegetation on an inter-decadal scale during the 20th century. ?\tMolluscan faunal abundance and diversity have undergone significant changes in central Biscayne Bay. ?\tIndicators of increased organic-rich sediments at No Name occur between 1869 to 1888 and between the 1930's to 1975. These changes may correlate to human activities (settlement, population growth). These findings represent a first step towards the project's goal to reconstruct the history of Biscayne Bay and they provide us with a working model to be tested at other sites. It is clear from our findings that Biscayne Bay has been a dynamic environment over the last 500 years, with natural changes occurring in salinity and benthic habitats. However, several significant changes have occurred in the 20th ce

The Dynamics of the Atmospheric Radiation Environment at Aviation Altitudes

NASA Technical Reports Server (NTRS)

Stassinopoulos, Epaminondas G.

2004-01-01

Single Event Effects vulnerability of on-board computers that regulate the: navigational, flight control, communication, and life support systems has become an issue in advanced modern aircraft, especially those that may be equipped with new technology devices in terabit memory banks (low voltage, nanometer feature size, gigabit integration). To address this concern, radiation spectrometers need to fly continually on a multitude of carriers over long periods of time so as to accumulate sufficient information that will broaden our understanding of the very dynamic and complex nature of the atmospheric radiation environment regarding: composition, spectral distribution, intensity, temporal variation, and spatial variation.

Sensitivity Analysis of an Automated Calibration Routine for Airborne Cameras

DTIC Science & Technology

2013-03-01

Karl Walli, Lt Col, USAF (Member) Date v AFIT-ENG-13- M -51 Abstract Given a known aircraft...pitch up. 7. Holding Pattern – A standard holding pattern with 30 second straight legs and 180° turns using 30° angle of bank at each end. 8. S ...It can be seen that at noise levels 0 1000 2000 3000 4000 5000 6000 7000 0 1 2 3 4 5 6 7 8 Er ro r ( m et er s ) PIxel Noise Standard

Patterns of among- and within-species variation in heterospecific pollen receipt: The importance of ecological generalization.

PubMed

Arceo-Gómez, Gerardo; Abdala-Roberts, Luis; Jankowiak, Anneka; Kohler, Clare; Meindl, George A; Navarro-Fernández, Carmen M; Parra-Tabla, Víctor; Ashman, Tia-Lynn; Alonso, Conchita

2016-03-01

Coflowering plants are at risk for receiving pollen from heterospecifics as well as conspecifics, yet evidence shows wide variation in the degree that heterospecific pollen transfer occurs. Evaluation of patterns and correlates of among- and within-species variation in heterospecific pollen (HP) receipt is key to understanding its importance for floral evolution and species coexistence; however, the rarity of deeply sampled multispecies comparisons has precluded such an evaluation. We evaluated patterns of among- and within-species variation in HP load size and diversity in 19 species across three distinct plant communities. We assessed the importance of phenotypic specialization (floral phenotype), ecological specialization (contemporary visitor assemblage), and conspecific flower density as determinants of among-species variation. We present hypotheses for different accrual patterns of HP within species based on the evenness and quality of floral visitors and evaluated these by characterizing the relationship between conspecific pollen (CP) and HP receipt. We found that within-species variation in HP receipt was greater than among-species and among-communities variation. Among species, ecological generalization emerged as the strongest driver of variation in HP receipt irrespective of phenotypic specialization. Within-species variation in HP load size and diversity was predicted most often from two CP-HP relationships (linear or exponentially decreasing), suggesting that two distinct types of plant-pollinator interactions prevail. Our results give important insights into the potential drivers of among- and within-species variation in HP receipt. They also highlight the value of explorations of patterns at the intraspecific level, which can ultimately shed light on plant-pollinator-mediated selection in diverse plant communities. © 2016 Botanical Society of America.

Lateral temperature variations at the core-mantle boundary deduced from the magnetic field

NASA Technical Reports Server (NTRS)

Bloxham, Jeremy; Jackson, Andrew

1990-01-01

Recent studies of the secular variation of the earth's magnetic field over periods of a few centuries have suggested that the pattern of fluid motion near the surface of earth's outer core may be strongly influenced by lateral temperature variations in the lowermost mantle. This paper introduces a self-consistent method for finding the temperature variations near the core surface by assuming that the dynamical balance there is geostrophic and that lateral density variations there are thermal in origin. As expected, the lateral temperature variations are very small. Some agreement is found between this pattern and the pattern of topography of the core-mantle boundary, but this does not conclusively answer to what extent core surface motions are controlled by the mantle, rather than being determined by processes in the core.

The Role of Language in National and Multinational Enterprises in Taiwan.

ERIC Educational Resources Information Center

Du-Babcock, Bertha; Babcock, Richard D.

Communication patterns and language use in four national and multinational companies operating in Taiwan illustrate the potential for communication problems when more than one language is in use. The companies include Texas Instruments, Kaohsiung Monomer Company, Ltd., Bank of America, and Cheng-Yia International Corporation. In the four…

The Dynamics of Stigmatizing Difference.

ERIC Educational Resources Information Center

Proudford, Karen L.

1999-01-01

Interviews and observations of a series of exchanges between black women's and white women's groups in a large banking organization were used to formulate theory about behavior patterns that produce one of the most troubling aspects of cross-racial interactions--stigmatizing. Results indicate that stigmas arise from group-level interaction that…

Life beyond the Basal.

ERIC Educational Resources Information Center

Grey, Jeanne; Carbone, Carole

1987-01-01

Reading is a tool for learning. The goal for the teaching of reading must be to produce lovers of reading. A holistic approach should replace exclusive dependence on basal readers. Effective methods are the following: (1) language experience approach; (2) word banks; (3) pattern books; (4) sustained silent reading; and (5) directed…

Exploring Evolutionary Patterns in Genetic Sequence: A Computer Exercise

ERIC Educational Resources Information Center

Shumate, Alice M.; Windsor, Aaron J.

2010-01-01

The increase in publications presenting molecular evolutionary analyses and the availability of comparative sequence data through resources such as NCBI's GenBank underscore the necessity of providing undergraduates with hands-on sequence analysis skills in an evolutionary context. This need is particularly acute given that students have been…

Patterns of School Change.

ERIC Educational Resources Information Center

Cohen, Marvin

An examination was done of school reform efforts supported by Bank Street College of Education's Center for Minority Achievement in two urban junior high schools in New York City. One school was a traditional junior high school with majority minority enrollment with most teachers using traditional techniques. The other school, the Media Arts…

Mirrors of Minds: Patterns of Experience in Educational Computing.

ERIC Educational Resources Information Center

Pea, Roy D., Ed.; Sheingold, Karen, Ed.

This publication presents selected papers that address certain questions that are being investigated by Bank Street College's Center for Children and Technology (CCT). CCT's researchers are working to help define new research inquiries and to document students' and teachers' uses and understandings of educational technologies. Included in this…

Salinity variability along the eastern continental shelf of Canada and the United States, 1973-2013

NASA Astrophysics Data System (ADS)

Bisagni, James J.

2016-09-01

Continental shelf waters located off the east coast of Canada and the United States are part of a long shelf current system that is partly comprised of colder, less-saline waters originating from high latitudes, including waters from the North Atlantic sub-polar gyre, along with ice-melt and freshwater input from local rivers. A 41-year analysis (1973-2013) of near-surface salinity (NSS) using three hydrographic datasets (Bedford Institute of Oceanography "Climate", NOAA/ESDIM, and Canadian Marine Environmental Data Service (MEDS)) allowed an examination of NSS variability within 11 continental shelf sub-regions, extending from the southern Newfoundland Shelf of eastern Canada to the DelMarVa/Hatteras Shelf of the United States. Although the periods of record containing sufficient data vary between sub-regions, regional mean NSS values are lowest within the Gulf of St. Lawrence and highest on the DelMarVa/Hatteras shelf, with largest annual variability within the Gulf of St. Lawrence. After removal of outliers, long-term linear trends computed from annual mean NSS were detected along the Newfoundland Shelf (+0.011 y-1), Western Scotian Shelf (-0.007 y-1), Gulf of Maine (-0.014 y-1), Georges Bank (-0.011 y-1), and DelMarVa/Hatteras Shelf (+0.024 y-1). A long-term quadratic fit to annual mean NSS from the Eastern Scotian Shelf displays a salinity increase through 1992 of +0.026 y-1, decreasing thereafter until 2013 by -0.028 y-1. A quadratic fit for the Western Grand Banks displays a NSS increase through 2007 of +0.022 y-1, decreasing thereafter through 2013 by -0.006 y-1. Annual mean NSS from the Eastern Grand Banks, Tail of the Grand Banks, Gulf of St. Lawrence, and Middle Atlantic Bight display no long-term trends. Inter-annual variability (IAV) of NSS residuals shows similar small mean squared error (mse) of 0.02-0.04 for the four northern-most sub-regions (Newfoundland Shelf, Eastern, Tail and Western Grand Banks) and are correlated at 0-year lag. IAV of NSS residuals (mse) are larger for the Gulf of St. Lawrence (~0.19), Eastern and Western Scotian Shelf (~0.09-0.06), Gulf of Maine and Georges Bank (~0.08-0.06), Middle Atlantic Bight (~0.19), and maximal for the DelMarVa/Hatteras Shelf (~0.36), and are also correlated at 0-year lag, but are uncorrelated with the four northern-most sub-regions. Consideration of a simple "flux variation" model that includes along-shelf, altimeter-derived velocity anomalies measured upstream on the Western Scotian Shelf and the positive along-shelf mean salinity gradient between the Eastern Scotian Shelf and the DelMarVa/Hatteras Shelf, may explain the synchronous nature of NSS residuals for the southern-most 6 sub-regions. Furthermore, the flux variation model results in calculated NSS residuals that are within a factor of two of observed NSS residuals for the southern-most DelMarVa/Hatteras Shelf. Co-varying broad-scale coastal sea level and shelf break front position anomalies also support the flux variation model, as do CMV Oleander temperature anomalies across a limited Middle Atlantic Bight shelf region. Overall, the relationships between along-shelf observations of NSS and other shelf parameters support an existing wind-driven dynamical shelf model. Specifically, a flux variation model is able to describe IAV of NSS along a section of the Canadian and U.S shelf for periods greater than one year. In the future, this model may be able to provide useful indices of regime change as noted within the Northeast Shelf Large Marine Ecosystem by other workers.

Process variation challenges and resolution in the negative-tone develop double patterning for 20nm and below technology node

NASA Astrophysics Data System (ADS)

Mehta, Sohan S.; Ganta, Lakshmi K.; Chauhan, Vikrant; Wu, Yixu; Singh, Sunil; Ann, Chia; Subramany, Lokesh; Higgins, Craig; Erenturk, Burcin; Srivastava, Ravi; Singh, Paramjit; Koh, Hui Peng; Cho, David

2015-03-01

Immersion based 20nm technology node and below becoming very challenging to chip designers, process and integration due to multiple patterning to integrate one design layer . Negative tone development (NTD) processes have been well accepted by industry experts for enabling technologies 20 nm and below. 193i double patterning is the technology solution for pitch down to 80 nm. This imposes tight control in critical dimension(CD) variation in double patterning where design patterns are decomposed in two different masks such as in litho-etch-litho etch (LELE). CD bimodality has been widely studied in LELE double patterning. A portion of CD tolerance budget is significantly consumed by variations in CD in double patterning. The objective of this work is to study the process variation challenges and resolution in the Negative Tone Develop Process for 20 nm and Below Technology Node. This paper describes the effect of dose slope on CD variation in negative tone develop LELE process. This effect becomes even more challenging with standalone NTD developer process due to q-time driven CD variation. We studied impact of different stacks with combination of binary and attenuated phase shift mask and estimated dose slope contribution individually from stack and mask type. Mask 3D simulation was carried out to understand theoretical aspect. In order to meet the minimum insulator requirement for the worst case on wafer the overlay and critical dimension uniformity (CDU) budget margins have slimmed. Besides the litho process and tool control using enhanced metrology feedback, the variation control has other dependencies too. Color balancing between the two masks in LELE is helpful in countering effects such as iso-dense bias, and pattern shifting. Dummy insertion and the improved decomposition techniques [2] using multiple lower priority constraints can help to a great extent. Innovative color aware routing techniques [3] can also help with achieving more uniform density and color balanced layouts.

Climate uniformity: its influence on team communication quality, task conflict, and team performance.

PubMed

González-Romá, Vicente; Hernández, Ana

2014-11-01

We investigated whether climate uniformity (the pattern of climate perceptions of organizational support within the team) is related to task conflict, team communication quality, and team performance. We used a sample composed of 141 bank branches and collected data at 3 time points. The results obtained showed that, after controlling for aggregate team climate, climate strength, and their interaction, a type of nonuniform climate pattern (weak dissimilarity) was directly related to task conflict and team communication quality. Teams with weak dissimilarity nonuniform patterns tended to show higher levels of task conflict and lower levels of team communication quality than teams with uniform climate patterns. The relationship between weak dissimilarity patterns and team performance was fully mediated by team communication quality. (PsycINFO Database Record (c) 2014 APA, all rights reserved).

Patterns of breast cancer mortality trends in Europe.

PubMed

Amaro, Joana; Severo, Milton; Vilela, Sofia; Fonseca, Sérgio; Fontes, Filipa; La Vecchia, Carlo; Lunet, Nuno

2013-06-01

To identify patterns of variation in breast cancer mortality in Europe (1980-2010), using a model-based approach. Mortality data were obtained from the World Health Organization database and mixed models were used to describe the time trends in the age-standardized mortality rates (ASMR). Model-based clustering was used to identify clusters of countries with homogeneous variation in ASMR. Three patterns were identified. Patterns 1 and 2 are characterized by stable or slightly increasing trends in ASMR in the first half of the period analysed, and a clear decline is observed thereafter; in pattern 1 the median of the ASMR is higher, and the highest rates were achieved sooner. Pattern 3 is characterised by a rapid increase in mortality until 1999, declining slowly thereafter. This study provides a general model for the description and interpretation of the variation in breast cancer mortality in Europe, based in three main patterns. Copyright © 2013 Elsevier Ltd. All rights reserved.

Beyond Impervious: Urban Land-Cover Pattern Variation and Implications for Watershed Management

NASA Astrophysics Data System (ADS)

Beck, Scott M.; McHale, Melissa R.; Hess, George R.

2016-07-01

Impervious surfaces degrade urban water quality, but their over-coverage has not explained the persistent water quality variation observed among catchments with similar rates of imperviousness. Land-cover patterns likely explain much of this variation, although little is known about how they vary among watersheds. Our goal was to analyze a series of urban catchments within a range of impervious cover to evaluate how land-cover varies among them. We then highlight examples from the literature to explore the potential effects of land-cover pattern variability for urban watershed management. High-resolution (1 m2) land-cover data were used to quantify 23 land-cover pattern and stormwater infrastructure metrics within 32 catchments across the Triangle Region of North Carolina. These metrics were used to analyze variability in land-cover patterns among the study catchments. We used hierarchical clustering to organize the catchments into four groups, each with a distinct landscape pattern. Among these groups, the connectivity of combined land-cover patches accounted for 40 %, and the size and shape of lawns and buildings accounted for 20 %, of the overall variation in land-cover patterns among catchments. Storm water infrastructure metrics accounted for 8 % of the remaining variation. Our analysis demonstrates that land-cover patterns do vary among urban catchments, and that trees and grass (lawns) are divergent cover types in urban systems. The complex interactions among land-covers have several direct implications for the ongoing management of urban watersheds.

Heat Transport upon River-Water Infiltration investigated by Fiber-Optic High-Resolution Temperature Profiling

NASA Astrophysics Data System (ADS)

Vogt, T.; Schirmer, M.; Cirpka, O. A.

2010-12-01

Infiltrating river water is of high relevance for drinking water supply by river bank filtration as well as for riparian groundwater ecology. Quantifying flow patterns and velocities, however, is hampered by temporal and spatial variations of exchange fluxes. In recent years, heat has become a popular natural tracer to estimate exchange rates between rivers and groundwater. Nevertheless, field investigations are often limited by insufficient sensors spacing or simplifying assumptions such as one-dimensional flow. Our interest lies in a detailed local survey of river water infiltration at a restored river section at the losing river Thur in northeast Switzerland. Here, we measured three high-resolution temperature profiles along an assumed flow path by means of distributed temperature sensing (DTS) using fiber optic cables wrapped around poles. Moreover, piezometers were equipped with standard temperature sensors for a comparison to the DTS data. Diurnal temperature oscillations were tracked in the river bed and the riparian groundwater and analyzed by means of dynamic harmonic regression and subsequent modeling of heat transport with sinusoidal boundary conditions to quantify seepage velocities and thermal diffusivities. Compared to the standard temperature sensors, the DTS data give a higher vertical resolution, facilitating the detection of process- and structure-dependent patterns of the spatiotemporal temperature field. This advantage overcompensates the scatter in the data due to instrument noise. In particular, we could demonstrate the impact of heat conduction through the unsaturated zone on the riparian groundwater by the high resolution temperature profiles.

Global patterns in coronavirus diversity

PubMed Central

Johnson, Christine K.; Greig, Denise J.; Kramer, Sarah; Che, Xiaoyu; Wells, Heather; Hicks, Allison L.; Joly, Damien O.; Wolfe, Nathan D.; Daszak, Peter; Karesh, William; Lipkin, W. I.; Morse, Stephen S.; Mazet, Jonna A. K.

2017-01-01

Abstract Since the emergence of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Middle East Respiratory Syndrom Coronavirus (MERS-CoV) it has become increasingly clear that bats are important reservoirs of CoVs. Despite this, only 6% of all CoV sequences in GenBank are from bats. The remaining 94% largely consist of known pathogens of public health or agricultural significance, indicating that current research effort is heavily biased towards describing known diseases rather than the ‘pre-emergent’ diversity in bats. Our study addresses this critical gap, and focuses on resource poor countries where the risk of zoonotic emergence is believed to be highest. We surveyed the diversity of CoVs in multiple host taxa from twenty countries to explore the factors driving viral diversity at a global scale. We identified sequences representing 100 discrete phylogenetic clusters, ninety-one of which were found in bats, and used ecological and epidemiologic analyses to show that patterns of CoV diversity correlate with those of bat diversity. This cements bats as the major evolutionary reservoirs and ecological drivers of CoV diversity. Co-phylogenetic reconciliation analysis was also used to show that host switching has contributed to CoV evolution, and a preliminary analysis suggests that regional variation exists in the dynamics of this process. Overall our study represents a model for exploring global viral diversity and advances our fundamental understanding of CoV biodiversity and the potential risk factors associated with zoonotic emergence. PMID:28630747

Evolution of the vestibulo-ocular system

NASA Technical Reports Server (NTRS)

Fritzsch, B.

1998-01-01

The evolutionary and developmental changes in the eye muscle innervation, the inner ear, and the vestibulo-ocular reflex are examined. Three eye muscle patterns, based on the innervation by distinct ocular motoneurons populations, can be identified: a lamprey, an elasmobranch, and a bony fish/tetrapod pattern. Four distinct patterns of variation in the vestibular system are described: a hagfish pattern, a lamprey pattern, an elasmobranch pattern, and a bony fish/tetrapod pattern. Developmental data suggest an influence of the hindbrain on ear pattern formation, thus potentially allowing a concomitant change of eye muscle innervation and ear variation. The connections between the ear and the vestibular nuclei and between the vestibular nuclei and ocular motoneurons are reviewed, and the role of neurotrophins for pattern specification is discussed. Three patterns are recognized in central projections: a hagfish pattern, a lamprey pattern, and a pattern for jawed vertebrates. Second-order connections show both similarities and differences between distantly related species such as lampreys and mammals. For example, elasmobranchs lack an internuclear system, which is at best poorly developed in lampreys. It is suggested that the vestibulo-ocular system shows only a limited degree of variation because of the pronounced functional constraints imposed on it.

Mycelial growth rate and toxin production in the seed pathogen Pyrenophora semeniperda: Resource trade-offs and temporally varying selection

Treesearch

S. E. Meyer; M. Masi; S. Clement; T. L. Davis; J. Beckstead

2015-01-01

Pyrenophora semeniperda, an important pathogen in Bromus tectorum seed banks in semi-arid western North America, exhibits >4-fold variation in mycelial growth rate. Host seeds exhibit seasonal changes in dormancy that affect the risk of pathogen-caused mortality. The hypothesis tested is that contrasting seed dormancy phenotypes select for contrasting strategies...

Effect of strain and cultural conditions on the production of cytochalasin B by the potential mycoherbicide Pyrenophora semeniperda (Pleosporaceae, Pleosporales)

Treesearch

Marco Masi; Antonio Evidente; Susan Meyer; Joshua Nicholson; Ashley Munoz

2014-01-01

The seed pathogen Pyrenophora semeniperda has demonstrated potential as a mycoherbicidal biocontrol for eliminating persistent seed banks of annual bromes on western North American rangelands. This pathogen exhibits variation in virulence that is related to mycelial growth rate, but direct laboratory tests of virulence on seeds often have low repeatability. We...

Robust linear discriminant models to solve financial crisis in banking sectors

NASA Astrophysics Data System (ADS)

Lim, Yai-Fung; Yahaya, Sharipah Soaad Syed; Idris, Faoziah; Ali, Hazlina; Omar, Zurni

2014-12-01

Linear discriminant analysis (LDA) is a widely-used technique in patterns classification via an equation which will minimize the probability of misclassifying cases into their respective categories. However, the performance of classical estimators in LDA highly depends on the assumptions of normality and homoscedasticity. Several robust estimators in LDA such as Minimum Covariance Determinant (MCD), S-estimators and Minimum Volume Ellipsoid (MVE) are addressed by many authors to alleviate the problem of non-robustness of the classical estimates. In this paper, we investigate on the financial crisis of the Malaysian banking institutions using robust LDA and classical LDA methods. Our objective is to distinguish the "distress" and "non-distress" banks in Malaysia by using the LDA models. Hit ratio is used to validate the accuracy predictive of LDA models. The performance of LDA is evaluated by estimating the misclassification rate via apparent error rate. The results and comparisons show that the robust estimators provide a better performance than the classical estimators for LDA.

Spatial and temporal patterning of bank vole demography and the epidemiology of the Puumala hantavirus in northeastern France

PubMed Central

AUGOT, D.; SAUVAGE, F.; BOUE, F.; BOULOY, M.; ARTOIS, M.; DEMERSON, J. M.; COMBES, B.; COUDRIER, D.; ZELLER, H.; CLIQUET, F.; PONTIER, D.

2008-01-01

SUMMARY Epidemiological data from bank voles, Myodes glareolus, naturally infected by the hantavirus Puumala (PUUV) were collected by a capture–mark–recapture protocol from 2000 to 2002 in the French department of Ardennes. Four monitored trapping sites were established in two forests located in two cantons (Flize and Monthermé). We captured 912 bank voles corresponding to 557 different individuals during 8820 trapping nights for an overall trapping success of 10·34%. The average PUUV seroprevalence was 22·4%. Characteristics of the system reported in North European countries are confirmed in France. PUUV seroprevalence and abundance of rodents appeared weakly linked. Adult voles were more frequently antibody-positive, but no difference between sexes was established. Anti-PUUV seropositive voles were captured and high seroprevalence was observed from both forests, without human infection reported in Flize canton during the study. One site among the four exhibited peculiar infection dynamics, where vole weight and infection risk were negatively correlated. PMID:18325126

Patterns of Communication in a Rural Population. Research Bulletin 1095.

ERIC Educational Resources Information Center

Ross, Peggy J.; Napier, Ted L.

Patterns of communication among residents of a predominantly rural county in Ohio were analyzed in 1975 to examine behavioral and attitudinal patterns regarding mass communication systems, and to test the extent to which variations in attitudes toward mass media were a function of variations in socio-economic and demographic characteristics.…

Aspirin Hydrolysis in Plasma Is a Variable Function of Butyrylcholinesterase and Platelet-activating Factor Acetylhydrolase 1b2 (PAFAH1b2)*

PubMed Central

Zhou, Gang; Marathe, Gopal K.; Hartiala, Jaana; Hazen, Stanley L.; Allayee, Hooman; Tang, W. H. Wilson; McIntyre, Thomas M.

2013-01-01

Aspirin is rapidly hydrolyzed within erythrocytes by a heterodimer of PAFAH1b2/PAFAH1b3 but also in plasma by an unidentified activity. Hydrolysis in both compartments was variable, with a 12-fold variation in plasma among 2226 Cleveland Clinic GeneBank patients. Platelet inhibition by aspirin was suppressed in plasma that rapidly hydrolyzed aspirin. Plasma aspirin hydrolysis was significantly higher in patients with coronary artery disease compared with control subjects (16.5 ± 4.4 versus 15.1 ± 3.7 nmol/ml/min; p = 3.4 × 10−8). A genome-wide association study of 2054 GeneBank subjects identified a single locus immediately adjacent to the BCHE (butyrylcholinesterase) gene associated with plasma aspirin hydrolytic activity (lead SNP, rs6445035; p = 9.1 × 10−17). However, its penetrance was low, and plasma from an individual with an inactivating mutation in BCHE still effectively hydrolyzed aspirin. A second aspirin hydrolase was identified in plasma, the purification of which showed it to be homomeric PAFAH1b2. This is distinct from the erythrocyte PAFAH1b2/PAFAH1b3 heterodimer. Inhibitors showed that both butyrylcholinesterase (BChE) and PAFAH1b2 contribute to aspirin hydrolysis in plasma, with variation primarily reflecting non-genetic variation of BChE activity. Therefore, aspirin is hydrolyzed in plasma by two enzymes, BChE and a new extracellular form of platelet-activating factor acetylhydrolase, PAFAH1b2. Hydrolytic effectiveness varies widely primarily from non-genetic variation of BChE activity that affects aspirin bioavailability in blood and the ability of aspirin to inhibit platelet aggregation. PMID:23508960

Ability of commercial demineralized freeze-dried bone allograft to induce new bone formation.

PubMed

Schwartz, Z; Mellonig, J T; Carnes, D L; de la Fontaine, J; Cochran, D L; Dean, D D; Boyan, B D

1996-09-01

Demineralized freeze-dried bone allograft (DFDBA) has been used extensively in periodontal therapy. The rationale for use of DFDBA includes the fact that proteins capable of inducing new bone; i.e., bone morphogenetic proteins, can be isolated from bone grafts. Commercial bone banks have provided DFDBA to the dental practitioner for many years; however, these organizations have not verified the osteoinductive capacity of their DFDBA preparations. The aim of this study was to determine the ability of commercial DFDBA preparations to induce new bone formation. DFDBA with particle sizes ranging from 200 to 500 microns was received from six bone banks using various bone production methods. Different lots of DFDBA from the same tissue bank were sometimes available. A total of 14 lots were examined. The surface area of bone particles in each sample was measured morphometrically and the pH of a solution containing the particles after suspension in distilled water determined. Samples from each DFDBA lot were implanted intramuscularly (10 mg) or subcutaneously (20 mg) into three different animals and tissue biopsies harvested after 4 weeks. One sample from each tissue bank was implanted and harvested after 8 weeks. At harvest, each area where DFDBA had been implanted was excised and examined by light microscopy. The ability of DFDBA to produce new bone was evaluated and the amount of residual bone particles measured. The results show that bone particles from all tissue banks had a variety of shapes and sizes, both before implantation and after 1 or 2 months of implantation. The pH of particle suspensions also varied between batches, as well as between tissue banks. None of the DFDBA induced new bone formation when implanted subcutaneously. Intramuscular implants from three banks induced new bone formation after 1 and 2 months. DFDBA from two banks caused new bone formation only after 2 months. However, DFDBA from one bank did not induce new bone at all. Particle size before implantation correlated with particle size after implantation. However, particle size did not correlate with ability to induce bone. The results show that commercial DFDBA differs in both size and ability to induce new bone formation, but that the two are not related. The study also indicates that wide variation in commercial bone bank preparations of DFDBA exist and that ability to induce new bone formation also varies widely. Furthermore, the results suggest that methods or assays for evaluating the ability of DFDBA to induce new bone should be developed and standardized.

Variations in Obesity Rates between US Counties: Impacts of Activity Access, Food Environments, and Settlement Patterns.

PubMed

Congdon, Peter

2017-09-07

There is much ongoing research about the effect of the urban environment as compared with individual behaviour on growing obesity levels, including food environment, settlement patterns (e.g., sprawl, walkability, commuting patterns), and activity access. This paper considers obesity variations between US counties, and delineates the main dimensions of geographic variation in obesity between counties: by urban-rural status, by region, by area poverty status, and by majority ethnic group. Available measures of activity access, food environment, and settlement patterns are then assessed in terms of how far they can account for geographic variation. A county level regression analysis uses a Bayesian methodology that controls for spatial correlation in unmeasured area risk factors. It is found that environmental measures do play a significant role in explaining geographic contrasts in obesity.

Variations in Obesity Rates between US Counties: Impacts of Activity Access, Food Environments, and Settlement Patterns

PubMed Central

2017-01-01

There is much ongoing research about the effect of the urban environment as compared with individual behaviour on growing obesity levels, including food environment, settlement patterns (e.g., sprawl, walkability, commuting patterns), and activity access. This paper considers obesity variations between US counties, and delineates the main dimensions of geographic variation in obesity between counties: by urban-rural status, by region, by area poverty status, and by majority ethnic group. Available measures of activity access, food environment, and settlement patterns are then assessed in terms of how far they can account for geographic variation. A county level regression analysis uses a Bayesian methodology that controls for spatial correlation in unmeasured area risk factors. It is found that environmental measures do play a significant role in explaining geographic contrasts in obesity. PMID:28880209

Impacts of exploratory drilling for oil and gas on the benthic environment of Georges Bank

USGS Publications Warehouse

Neff, J. M.; Bothner, Michael H.; Maciolek, N. J.; Grassle, J. F.

1989-01-01

Cluster analysis revealed a strong relationship between community structure and both sediment type and water depth. Little seasonal variation was detected, but some interannual differences were revealed by cluster analysis and correspondence analysis. The replicates from a station always resembled each other more than they resembled any replicates from other stations. In addition, the combined replicates from a station always clustered with samples from that station taken on other cruises. This excellent replication and uniformity of the benthic infaunal community at a station over time made it possible to detect very subtle changes in community parameters that might be related to discharges of drilling fluid and drill cuttings. Nevertheless, no changes were detected in benthic communities of Georges Bank that could be attributed to drilling activities.

Weekly variation in health-care quality by day and time of admission: a nationwide, registry-based, prospective cohort study of acute stroke care.

PubMed

Bray, Benjamin D; Cloud, Geoffrey C; James, Martin A; Hemingway, Harry; Paley, Lizz; Stewart, Kevin; Tyrrell, Pippa J; Wolfe, Charles D A; Rudd, Anthony G

2016-07-09

Studies in many health systems have shown evidence of poorer quality health care for patients admitted on weekends or overnight than for those admitted during the week (the so-called weekend effect). We postulated that variation in quality was dependent on not only day, but also time, of admission, and aimed to describe the pattern and magnitude of variation in the quality of acute stroke care across the entire week. We did this nationwide, registry-based, prospective cohort study using data from the Sentinel Stroke National Audit Programme. We included all adult patients (aged >16 years) admitted to hospital with acute stroke (ischaemic or primary intracerebral haemorrhage) in England and Wales between April 1, 2013, and March 31, 2014. Our outcome measure was 30 day post-admission survival. We estimated adjusted odds ratios for 13 indicators of acute stroke-care quality by fitting multilevel multivariable regression models across 42 4-h time periods per week. The study cohort comprised 74,307 patients with acute stroke admitted to 199 hospitals. Care quality varied across the entire week, not only between weekends and weekdays, with different quality measures showing different patterns and magnitudes of temporal variation. We identified four patterns of variation: a diurnal pattern (thrombolysis, brain scan within 12 h, brain scan within 1 h, dysphagia screening), a day of the week pattern (stroke physician assessment, nurse assessment, physiotherapy, occupational therapy, and assessment of communication and swallowing by a speech and language therapist), an off-hours pattern (door-to-needle time for thrombolysis), and a flow pattern whereby quality changed sequentially across days (stroke-unit admission within 4 h). The largest magnitude of variation was for door-to-needle time within 60 min (range in quality 35-66% [16/46-232/350]; coefficient of variation 18·2). There was no difference in 30 day survival between weekends and weekdays (adjusted odds ratio 1·03, 95% CI 0·95-1·13), but patients admitted overnight on weekdays had lower odds of survival (0·90, 0·82-0·99). The weekend effect is a simplification, and just one of several patterns of weekly variation occurring in the quality of stroke care. Weekly variation should be further investigated in other health-care settings, and quality improvement should focus on reducing temporal variation in quality and not only the weekend effect. None. Copyright © 2016 Elsevier Ltd. All rights reserved.

Dryland anabranching river morphodynamics: Río Capilla, Salar de Uyuni, Bolivia

NASA Astrophysics Data System (ADS)

Li, Jiaguang; Bristow, Charlie S.; Luthi, Stefan M.; Donselaar, Marinus E.

2015-12-01

The dryland anabranching river Río Capilla is characterized by nonvegetated and vegetated reaches with prominent channel morphology. To identify the morphodynamics of such dryland anabranching systems and their controls, we investigated the Río Capilla of the southern Altiplano Plateau using high-resolution satellite imagery and field measurements. Comparison of high-resolution satellite data reveals that erosion exceeds deposition for the main channel, accompanied by changes in channel planform, such as meander and channel morphology. On-site surveys combined with high-precision GPS and high-resolution satellite imagery show that channels are characterized by shallowness and poor development of levees. The study area of the Río Capilla is divided into two zones of different slopes: zone 1 with a high slope and zone 2 with a low slope. Zone 1 has a relatively straight main channel with few anabranches and grass-covered banks that are stable despite the high gradient; whereas zone 2 is typified by more anabranches with nonvegetated banks, and the main channel experiences prominent bank accretion and erosion. Excavations show that point-bar deposits are fine-sand-dominated in two reaches and that river banks primarily consist of silt and clay. The limited vegetation cover and abundance of desiccation cracks and macropores make the river bank more erodible leading to pronounced lateral migration in this low-gradient dryland river system. Shallow channels and poor development of levees in combination with in-channel accretionary benches result in frequent overbank flooding, which results in a high density of crevasse splays over unconsolidated river banks and accretionary benches. Connection of headcuts and crevasse channels together with lateral migration and chute channels and reactivation of partially abandoned meanders produces an anabranching pattern in such dryland river systems.

Formation of offshore tidal sand banks triggered by a gasmined bed subsidence

NASA Astrophysics Data System (ADS)

Roos, Pieter C.; Hulscher, Suzanne J. M. H.

2002-12-01

Offshore gasmining is an example of a human intervention with a morphological impact. On land, it is usually attended with a dish-like bed depression. We show that, if located at sea, such a bed depression can become morphodynamically active by triggering mechanisms related to tidal sand bank formation. To that end, a simple morphological model is considered which describes an erodible bed subject to a tidal wave in a shallow sea. The continuous subsidence is modelled by a sink term in the sediment balance. Then, a linear approximation is carried out to describe the bed evolution after the onset of subsidence. The results, presented in physical space, show that the subsidence triggers the formation of a sand bank pattern that gradually spreads around the centre of subsidence, at a rate that may go up to 160 m year -1, depending on the tidal transport rate and the tidal eccentricity. The dimension of the depression does not affect the spreading rate nor the orientation of the sand banks, but it does influence their spacing. The main conclusion is that the horizontal extent of the area influenced by the bed depression by far exceeds that of the direct subsidence, thus showing that bed depressions on land and at sea indeed behave in fundamentally different ways. The results suggest that nonlinear effects are worthwhile to be investigated in order to describe finite amplitude development of sand banks as well as the interaction between subsidence and bed forms.

The presence of accessory cusps in chimpanzee lower molars is consistent with a patterning cascade model of development

PubMed Central

Skinner, Matthew M; Gunz, Philipp

2010-01-01

Tooth crown morphology is of primary importance in fossil primate systematics and understanding the developmental basis of its variation facilitates phenotypic analyses of fossil teeth. Lower molars of species in the chimp/human clade (including fossil hominins) possess between four and seven cusps and this variability has been implicated in alpha taxonomy and phylogenetic systematics. What is known about the developmental basis of variation in cusp number – based primarily on experimental studies of rodent molars – suggests that cusps form under a morphodynamic, patterning cascade model involving the iterative formation of enamel knots. In this study we test whether variation in cusp 6 (C6) presence in common chimpanzee and bonobo lower molars (n = 55) is consistent with predictions derived from the patterning cascade model. Using microcomputed tomography we imaged the enamel-dentine junction of lower molars and used geometric morphometrics to examine shape variation in the molar crown correlated with variation in C6 presence (in particular the size and spacing of the dentine horns). Results indicate that C6 presence is consistent with predictions of a patterning cascade model, with larger molars exhibiting a higher frequency of C6 and with the location and size of later-forming cusps correlated with C6 variation. These results demonstrate that a patterning cascade model is appropriate for interpreting cusp variation in Pan and have implications for cusp nomenclature and the use of accessory cusp morphology in primate systematics. PMID:20629983

Global vegetation productivity response to climatic oscillations during the satellite era.

PubMed

Gonsamo, Alemu; Chen, Jing M; Lombardozzi, Danica

2016-10-01

Climate control on global vegetation productivity patterns has intensified in response to recent global warming. Yet, the contributions of the leading internal climatic variations to global vegetation productivity are poorly understood. Here, we use 30 years of global satellite observations to study climatic variations controls on continental and global vegetation productivity patterns. El Niño-Southern Oscillation (ENSO) phases (La Niña, neutral, and El Niño years) appear to be a weaker control on global-scale vegetation productivity than previously thought, although continental-scale responses are substantial. There is also clear evidence that other non-ENSO climatic variations have a strong control on spatial patterns of vegetation productivity mainly through their influence on temperature. Among the eight leading internal climatic variations, the East Atlantic/West Russia Pattern extensively controls the ensuing year vegetation productivity of the most productive tropical and temperate forest ecosystems of the Earth's vegetated surface through directionally consistent influence on vegetation greenness. The Community Climate System Model (CCSM4) simulations do not capture the observed patterns of vegetation productivity responses to internal climatic variations. Our analyses show the ubiquitous control of climatic variations on vegetation productivity and can further guide CCSM and other Earth system models developments to represent vegetation response patterns to unforced variability. Several winter time internal climatic variation indices show strong potentials on predicting growing season vegetation productivity two to six seasons ahead which enables national governments and farmers forecast crop yield to ensure supplies of affordable food, famine early warning, and plan management options to minimize yield losses ahead of time. © 2016 John Wiley & Sons Ltd.

The Development of a Conceptual Framework and Preliminary Item Bank for Childbirth-Specific Patient-Reported Outcome Measures.

PubMed

Korst, Lisa M; Fridman, Moshe; Saeb, Samia; Greene, Naomi; Fink, Arlene; Gregory, Kimberly D

2018-05-24

To develop a conceptual framework and preliminary item bank for childbirth-specific patient-reported outcome (PRO) domains. Women, who were U.S. residents, ≥18 years old, and ≥20 weeks pregnant, were surveyed regarding their childbirth values and preferences (V&P) using online panels. Using community-based research techniques and Patient-Reported Outcomes Management Information System (PROMIS ® ) methodology, we conducted a comprehensive literature review to identify self-reported survey items regarding patient-reported V&P and childbirth experiences and outcomes (PROs). The V&P/PRO domains were validated by focus groups. We conducted a cross-sectional observational study and fitted a multivariable logistic regression model to each V&P item to describe "who" wanted each item. We identified 5,880 V&P/PRO items that mapped to 19 domains and 58 subdomains. We present results for the 2,250 survey respondents who anticipated a vaginal delivery in a hospital. Wide variation existed regarding each V&P item, and personal characteristics, such as maternal confidence and ability to cope well with pain, were frequent predictors in the models. The resulting preliminary item bank consisted of 60 key personal characteristics and 63 V&P/PROs. The conceptual framework and preliminary (PROMIS ® ) item bank presented here provide a foundation for the development of childbirth-specific V&P/PROs. © Health Research and Educational Trust.

Variation in Strategy Use across Grade Level by Pattern Generalization Types

ERIC Educational Resources Information Center

El Mouhayar, Rabih; Jurdak, Murad

2015-01-01

This paper explored variation of strategy use in pattern generalization across different generalization types and across grade level. A test was designed to assess students' strategy use in pattern generalization tasks. The test was given to a sample of 1232 students from grades 4 to 11 from five schools in Lebanon. The findings of this study…

Evolutionary Perspective on Collective Decision Making

NASA Astrophysics Data System (ADS)

Farrell, Dene; Sayama, Hiroki; Dionne, Shelley D.; Yammarino, Francis J.; Wilson, David Sloan

Team decision making dynamics are investigated from a novel perspective by shifting agency from decision makers to representations of potential solutions. We provide a new way to navigate social dynamics of collective decision making by interpreting decision makers as constituents of an evolutionary environment of an ecology of evolving solutions. We demonstrate distinct patterns of evolution with respect to three forms of variation: (1) Results with random variations in utility functions of individuals indicate that groups demonstrating minimal internal variation produce higher true utility values of group solutions and display better convergence; (2) analysis of variations in behavioral patterns within a group shows that a proper balance between selective and creative evolutionary forces is crucial to producing adaptive solutions; and (3) biased variations of the utility functions diminish the range of variation for potential solution utility, leaving only the differential of convergence performance static. We generally find that group cohesion (low random variation within a group) and composition (appropriate variation of behavioral patterns within a group) are necessary for a successful navigation of the solution space, but performance in both cases is susceptible to group level biases.

Energy Transfer to Upper Trophic Levels on a Small Offshore Bank

DTIC Science & Technology

2008-01-01

other feeding hotspots in the Gulf of Maine show that they are ephemeral—sometimes very active, often not. Our goals are to understand the factors that...focused on defining patterns of biodiversity in the oceans and the processes that shape them. The Gulf of Maine program has the additional aim of

Fractal Inequality: A Social Network Analysis of Global and Regional International Student Mobility

ERIC Educational Resources Information Center

Macrander, Ashley

2017-01-01

Literature on global international student mobility (ISM) highlights the uneven nature of student flows--from the developing to the developed world--however, studies have yet to address whether this pattern is replicated within expanding regional networks. Utilizing social network analysis, UNESCO ISM data, and World Bank income classifications,…

Data-Banks in Theory and in Practice; A Case Study in Higher Education.

ERIC Educational Resources Information Center

McIntosh, Naomi E.

In a home-based institution like the Open University of Great Britain where enrollment is open and participation patterns are erratic, maintaining up-to-date, accurate records of students is imperative. A systematized data base is required for the administration of admissions, fee collection, materials distribution, monitoring and marking of…

Optimal design of a bank of spatio-temporal filters for EEG signal classification.

PubMed

Higashi, Hiroshi; Tanaka, Toshihisa

2011-01-01

The spatial weights for electrodes called common spatial pattern (CSP) are known to be effective in EEG signal classification for motor imagery based brain computer interfaces (MI-BCI). To achieve accurate classification in CSP, the frequency filter should be properly designed. To this end, several methods for designing the filter have been proposed. However, the existing methods cannot consider plural brain activities described with different frequency bands and different spatial patterns such as activities of mu and beta rhythms. In order to efficiently extract these brain activities, we propose a method to design plural filters and spatial weights which extract desired brain activity. The proposed method designs finite impulse response (FIR) filters and the associated spatial weights by optimization of an objective function which is a natural extension of CSP. Moreover, we show by a classification experiment that the bank of FIR filters which are designed by introducing an orthogonality into the objective function can extract good discriminative features. Moreover, the experiment result suggests that the proposed method can automatically detect and extract brain activities related to motor imagery.

A geostatistical analysis of small-scale spatial variability in bacterial abundance and community structure in salt marsh creek bank sediments

NASA Technical Reports Server (NTRS)

Franklin, Rima B.; Blum, Linda K.; McComb, Alison C.; Mills, Aaron L.

2002-01-01

Small-scale variations in bacterial abundance and community structure were examined in salt marsh sediments from Virginia's eastern shore. Samples were collected at 5 cm intervals (horizontally) along a 50 cm elevation gradient, over a 215 cm horizontal transect. For each sample, bacterial abundance was determined using acridine orange direct counts and community structure was analyzed using randomly amplified polymorphic DNA fingerprinting of whole-community DNA extracts. A geostatistical analysis was used to determine the degree of spatial autocorrelation among the samples, for each variable and each direction (horizontal and vertical). The proportion of variance in bacterial abundance that could be accounted for by the spatial model was quite high (vertical: 60%, horizontal: 73%); significant autocorrelation was found among samples separated by 25 cm in the vertical direction and up to 115 cm horizontally. In contrast, most of the variability in community structure was not accounted for by simply considering the spatial separation of samples (vertical: 11%, horizontal: 22%), and must reflect variability from other parameters (e.g., variation at other spatial scales, experimental error, or environmental heterogeneity). Microbial community patch size based upon overall similarity in community structure varied between 17 cm (vertical) and 35 cm (horizontal). Overall, variability due to horizontal position (distance from the creek bank) was much smaller than that due to vertical position (elevation) for both community properties assayed. This suggests that processes more correlated with elevation (e.g., drainage and redox potential) vary at a smaller scale (therefore producing smaller patch sizes) than processes controlled by distance from the creek bank. c2002 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved.

Fish Distribution and Habitat Complexity on Banks of the Strait of Sicily (Central Mediterranean Sea) from Remotely-Operated Vehicle (ROV) Explorations

PubMed Central

Esposito, Valentina; Battaglia, Pietro; Altobelli, Chiara; Perzia, Patrizia; Romeo, Teresa; Canese, Simonepietro; Andaloro, Franco

2016-01-01

The Strait of Sicily was recognized internationally as an “Ecologically or Biologically Significant Area” by the Contracting Parties of the Convention on Biological Diversity in 2014. However, basic aspects of its fish diversity are still unknown and most of the information comes from traditional trawl surveys. This paper provides the first detailed description, using a Remotely Operated Vehicle (ROV), of the composition and depth distribution of the demersal fish assemblages found on banks of the Strait of Sicily and the related habitat complexity from 35 to 240 m depth. A total of 24 families and 52 fish species were recorded and depth was consistently associated with a significant proportion of the variation of the fish assemblage. The highest species richness was observed at the shallowest depth layer (0–50 m) and significantly decreased, remaining almost constant, in deeper layers. Similarly the highest abundance was recorded at 0–50 m, where C. julis represented the most abundant species, and decreased progressively throughout the whole depth gradient. Although the factor habitat complexity explained only a small proportion of the fish assemblage variation, significant differences among different degrees of habitat complexity were observed, together with a general positive trend for species richness and abundance with increasing habitat complexity. The ROV also allowed us to observe some rare or poorly known fish species such as Scorpaenodes arenai, Hyporthodus haifensis, Myliobatis aquila, Gadella maraldi, Epinephelus caninus and Lappanella fasciata. These findings show that banks serve as reservoirs for fish abundance and biodiversity and that immediate environmental conservation and management actions represent a priority not only for Italy but also for other countries which share the same area. PMID:27936221

Crustal characteristic variation in the central Yamato Basin, Japan Sea back-arc basin, deduced from seismic survey results

NASA Astrophysics Data System (ADS)

Sato, Takeshi; No, Tetsuo; Miura, Seiichi; Kodaira, Shuichi

2018-02-01

The crustal structure of the Yamato Bank, the central Yamato Basin, and the continental shelf in the southern Japan Sea back-arc basin is obtained based on a seismic survey using ocean bottom seismographs and seismic shot to elucidate the back-arc basin formation processes. The central Yamato Basin can be divided into three domains based on the crustal structure: the deep basin, the seamount, and the transition domains. In the deep basin domain, the crust without the sedimentary layer is about 12-13 km thick. Very few units have P-wave velocity of 5.4-6.0 km/s, which corresponds to the continental upper crust. In the seamount and transition domains, the crust without the sedimentary layer is about 12-16 km thick. The P-wave velocities of the upper and lower crusts differs among the deep basin, the seamount, and the transition domains. These results indicate that the central Yamato Basin displays crustal variability in different domains. The crust of the deep basin domain is oceanic in nature and suggests advanced back-arc basin development. The seamount domain might have been affected by volcanic activity after basin opening. In the transition domain, the crust comprises mixed characters of continental and oceanic crust. This crustal variation might represent the influence of different processes in the central Yamato Basin, suggesting that crustal development was influenced not only by back-arc opening processes but also by later volcanic activity. In the Yamato Bank and continental shelf, the upper crust has thickness of about 17-18 km and P-wave velocities of 3.3-4.1 to 6.6 km/s. The Yamato Bank and the continental shelf suggest a continental crustal character.

Recent variations in seasonality of temperature and precipitation in Canada, 1976-95

NASA Astrophysics Data System (ADS)

Whitfield, Paul H.; Bodtker, Karin; Cannon, Alex J.

2002-11-01

A previously reported analysis of rehabilitated monthly temperature and precipitation time series for several hundred stations across Canada showed generally spatially coherent patterns of variation between two decades (1976-85 and 1986-95). The present work expands that analysis to finer time scales and a greater number of stations. We demonstrate how the finer temporal resolution, at 5 day or 11 day intervals, increases the separation between clusters of recent variations in seasonal patterns of temperature and precipitation. We also expand the analysis by increasing the number of stations from only rehabilitated monthly data sets to rehabilitated daily sets, then to approximately 1500 daily observation stations. This increases the spatial density of data and allows a finer spatial resolution of patterns between the two decades. We also examine the success of clustering partial records, i.e. sites where the data record is incomplete. The intent of this study was to be consistent with previous work and explore how greater temporal and spatial detail in the climate data affects the resolution of patterns of recent climate variations. The variations we report for temperature and precipitation are taking place at different temporal and spatial scales. Further, the spatial patterns are much broader than local climate regions and ecozones, indicating that the differences observed may be the result of variations in atmospheric circulation.

Specimen banking of marine organisms in the United States: Current status and long-term prospective

USGS Publications Warehouse

Becker, P.R.; Wise, S.A.; Thorsteinson, L.; Koster, B.J.; Rowles, T.

1997-01-01

A major part of the activities conducted over the last decade by the National Biomonitoring Specimen Bank (NBSB) has involved the archival of marine specimens collected by ongoing environmental monitoring programs. These archived specimens include bivalves, marine sediments, and fish tissues collected by the National Status and Trends and the Exxon Valdez Oil Spill Damage Assessment programs, and marine mammal tissues collected by the Marine Mammal Health and Stranding Response Program and the Alaska Marine Mammal Tissue Archival Project. In addition to supporting these programs, the specimens have been used to investigate circumpolar patterns of chlorinated hydrocarbon concentrations, genetic separation of marine animal stocks, baseline levels of essential and nonessential elements in marine mammals, and the potential risk to human consumers in the Arctic from anthropogenic contaminants found in local subsistence foods. The NBSB specimens represent a resource that has the potential for addressing future issues of marine environmental quality and ecosystem changes through retrospective analysis; however, an ecosystem-based food web approach would maximize this potential. The current status of the NBSB activities related to the banking of marine organisms is presented and discussed, the long-term prospective of these activities is presented, and the importance of an ecosystem-based food web monitoring approach to the value of specimen banking is discussed.

Polymorphism and methylation patterns in Agave tequilana Weber var. 'Azul' plants propagated asexually by three different methods.

PubMed

Díaz-Martínez, Miriam; Nava-Cedillo, Alejandro; Guzmán-López, José Alfredo; Escobar-Guzmán, Rocío; Simpson, June

2012-04-01

Genetic variation in three forms of asexually propagated Agave tequilana Weber var. 'Azul' plants namely offsets, bulbils and in vitro cultured individuals was studied by AFLP analysis. Low levels of variation were observed between mother plants and offsets and a higher level between mother plant and bulbils. Families obtained from commercial plantations showed lower levels of variation in comparison to families grown as ornamentals. No variation was observed between the original explant and four generations of in vitro cultured plants. Epigenetic variation was also studied by analyzing changes in methylation patterns between mother plants and offspring in each form of asexual reproduction. Offsets and bulbils showed an overall decrease in methylation whereas in vitro cultured plants showed patterns specific to each generation: Generations 1 and 4 showed overall demethylation whereas Generations 2 and 3 showed increased methylation. Analysis of ESTs associated with transposable elements revealed higher proportions of ESTs from Ty1-copia-like, Gypsy and CACTA transposable elements in cDNA libraries obtained from pluripotent tissue suggesting a possible correlation between methylation patterns, expression of transposable element associated genes and somaclonal variation. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

Anatomical Variability in the Termination of the Basilar Artery in the Human Cadaveric Brain.

PubMed

Gunnal, Sandhya; Farooqui, Mujeebuddin; Wabale, Rajendra

2015-01-01

The basilar artery (BA) is the prominent median vessel of the vertebrobasilar circulation and usually terminates into two posterior cerebral arteries forming the posterior angle of the Circle of Willis (CW). To tackle different variations of CW, basilar artery acts as a guideline for neuroradiologists and neurosurgeons. Basilar termination is the most frequent site of aneurysm. Abnormalities at the site of termination may compress the oculomotor nerve. Variations at the termination may complicate surgeries at the base of brain. The present study aims to add to the knowledge regarding the termination pattern of the BA. 170 BA terminations were studied. Morphological variations in the termination pattern were noted. Frequency of variations in termination patterns was recorded. Dimensions of BA were measured. Data were analyzed. Morphological variations in termination were seen in 17.64%. Bifurcation, Trifurcation, Quadrifurcation, Pentafurcation and Nonfurcation of BA was seen in 82.35%, 5.29%, 5.88%, 3.52% and 2.94% respectively. BA associated with aneurysm and Fenestration was seen in 3.52% and 1.17% respectively. Mean length and diameter of BA was 30.27 mm and 4.8 mm respectively. Awareness of these anatomical variations in termination patterns of BA is important in neurovascular procedures.

Evolutionary ecology of resprouting and seeding in fire-prone ecosystems

USGS Publications Warehouse

Pausas, Juli G.; Keeley, Jon E.

2014-01-01

There are two broad mechanisms by which plant populations persist under recurrent disturbances: resprouting from surviving tissues, and seedling recruitment. Species can have one of these mechanisms or both. However, a coherent framework explaining the differential evolutionary pressures driving these regeneration mechanisms is lacking. We propose a bottom-up approach in addressing this question that considers the relative survivorship of adults and juveniles in an evolutionary context, based on two assumptions. First, resprouting and seeding can be interpreted by analogy with annual versus perennial life histories; that is, if we consider disturbance cycles to be analogous to annual cycles, then resprouting species are analogous to the perennial life history with iteroparous reproduction, and obligate seeding species that survive disturbances solely through seed banks are analogous to the annual life history with semelparous reproduction. Secondly, changes in the selective regimes differentially modify the survival rates of adults and juveniles and thus the relative costs and benefits of resprouting versus seeding. Our approach provides a framework for understanding temporal and spatial variation in resprouting and seeding under crown-fire regimes. It accounts for patterns of coexistence and environmental changes that contribute to the evolution of seeding from resprouting ancestors.

Interbreeding among deeply divergent mitochondrial lineages in the American cockroach (Periplaneta americana)

NASA Astrophysics Data System (ADS)

von Beeren, Christoph; Stoeckle, Mark Y.; Xia, Joyce; Burke, Griffin; Kronauer, Daniel J. C.

2015-02-01

DNA barcoding promises to be a useful tool to identify pest species assuming adequate representation of genetic variants in a reference library. Here we examined mitochondrial DNA barcodes in a global urban pest, the American cockroach (Periplaneta americana). Our sampling effort generated 284 cockroach specimens, most from New York City, plus 15 additional U.S. states and six other countries, enabling the first large-scale survey of P. americana barcode variation. Periplaneta americana barcode sequences (n = 247, including 24 GenBank records) formed a monophyletic lineage separate from other Periplaneta species. We found three distinct P. americana haplogroups with relatively small differences within (<=0.6%) and larger differences among groups (2.4%-4.7%). This could be interpreted as indicative of multiple cryptic species. However, nuclear DNA sequences (n = 77 specimens) revealed extensive gene flow among mitochondrial haplogroups, confirming a single species. This unusual genetic pattern likely reflects multiple introductions from genetically divergent source populations, followed by interbreeding in the invasive range. Our findings highlight the need for comprehensive reference databases in DNA barcoding studies, especially when dealing with invasive populations that might be derived from multiple genetically distinct source populations.

Landscape Pattern Dynamic Change Research of Harbin Songbei Based on GIS Technology

NASA Astrophysics Data System (ADS)

Chenyang, Ding; Kun, Wang; Kang, Li Kang

2018-05-01

With the rapid development of social economy in the Songhua River basin, there are big dynamic change of the landscape of the new area beside the river bank, which is represented by Harbin Songbei. This paper selects 13 representative indexes from landscape and patch level, analyzes the cause and process of the change of landscape pattern in Songbei during 2005-2015, and probes into the characteristics of the change based on the principle of landscape ecology, using remote sensing and GIS technology and Fragstats3.3 software data statistics.

Residual flow patterns and morphological changes along a macro- and meso-tidal coastline

NASA Astrophysics Data System (ADS)

Leonardi, Nicoletta; Plater, Andrew James

2017-11-01

The hydrodynamic and residual transport patterns arising from oscillating tidal motion have important consequences for the transport of sediments, and for the evolution of the shoreline, especially under macro- and meso-tidal conditions. For many locations there are significant uncertainties about residual currents and sediment transport characteristics, and their possible influence on the morphological evolution of the coastline and on the character of the bed. Herein we use the coastline of SE England as a test case to investigate possible changes in residual currents, and residual transport patterns from neap to spring tide, the reciprocal interaction between residuals and the character of the bed, and the morphological evolution of the coastline at a century timescale. We found that in the long term the morphology of the system evolves toward a dynamic equilibrium configuration characterized by smaller, and spatially constant residual transport patterns. While the spatial distribution of residual currents maintains a similar trend during both neap and spring tide, during spring tide and for large areas residual currents switch between northerly and southerly directions, and their magnitude is doubled. Residual eddies develop in regions characterized by the presence of sand bars due to the interaction of the tide with the varying topography. Residual transport patterns are also computed for various sediment fractions, and based on the hydrodynamics and sediment availability at the bottom. We found that the distribution of sediments on the bed is significantly correlated with the intensity of residuals. Finally, the majority of long-term morphological changes tend to develop or augment sand banks features, with an increase in elevation and steepening of the bank contours.

Mapping irrigated areas of Ghana using fusion of 30 m and 250 m resolution remote-sensing data

USGS Publications Warehouse

Gumma, M.K.; Thenkabail, P.S.; Hideto, F.; Nelson, A.; Dheeravath, V.; Busia, D.; Rala, A.

2011-01-01

Maps of irrigated areas are essential for Ghana's agricultural development. The goal of this research was to map irrigated agricultural areas and explain methods and protocols using remote sensing. Landsat Enhanced Thematic Mapper (ETM+) data and time-series Moderate Resolution Imaging Spectroradiometer (MODIS) data were used to map irrigated agricultural areas as well as other land use/land cover (LULC) classes, for Ghana. Temporal variations in the normalized difference vegetation index (NDVI) pattern obtained in the LULC class were used to identify irrigated and non-irrigated areas. First, the temporal variations in NDVI pattern were found to be more consistent in long-duration irrigated crops than with short-duration rainfed crops due to more assured water supply for irrigated areas. Second, surface water availability for irrigated areas is dependent on shallow dug-wells (on river banks) and dug-outs (in river bottoms) that affect the timing of crop sowing and growth stages, which was in turn reflected in the seasonal NDVI pattern. A decision tree approach using Landsat 30 m one time data fusion with MODIS 250 m time-series data was adopted to classify, group, and label classes. Finally, classes were tested and verified using ground truth data and national statistics. Fuzzy classification accuracy assessment for the irrigated classes varied between 67 and 93%. An irrigated area derived from remote sensing (32,421 ha) was 20-57% higher than irrigated areas reported by Ghana's Irrigation Development Authority (GIDA). This was because of the uncertainties involved in factors such as: (a) absence of shallow irrigated area statistics in GIDA statistics, (b) non-clarity in the irrigated areas in its use, under-development, and potential for development in GIDA statistics, (c) errors of omissions and commissions in the remote sensing approach, and (d) comparison involving widely varying data types, methods, and approaches used in determining irrigated area statistics using GIDA and remote sensing. Extensive field campaigns to help in better classification and validation of irrigated areas using high (30 m ) to very high (<5 m) resolution remote sensing data that are fused with multi temporal data like MODIS are the way forward. This is especially true in accounting for small yet contiguous patches of irrigated areas from dug-wells and dug-outs. ?? 2011 by the authors.

Atmospheric circulation patterns and spatial climatic variations in Beringia

NASA Astrophysics Data System (ADS)

Mock, Cary J.; Bartlein, Patrick J.; Anderson, Patricia M.

1998-08-01

Analyses of more than 40 years of climatic data reveal intriguing spatial variations in climatic patterns for Beringia (North-eastern Siberia and Alaska), aiding the understanding of the hierarchy of climatic controls that operate at different spatial scales within the Arctic. A synoptic climatology, using a subjective classification methodology on January and July sea level pressure, and July 500 hPa height anomaly patterns, identified 13 major atmospheric circulation patterns (26 pairs consisting of 13 synoptic/temperature and 13 synoptic/precipitation comparisons) that occur over Beringia. Composite anomaly maps of circulation, temperature, and precipitation described the spatial variability of surface climatic responses to circulation. Results indicate that nine synoptic pairs yield homogeneous surface climatic anomaly patterns throughout most of Beringia. However, many of the surface climatic responses illustrate heterogeneous anomaly patterns as a result of variations in circulation controls, such as troughing over East Asia and the Pacific subtropical high superimposed over topography, with small shifts in atmospheric circulation dramatically altering spatial variations of anomaly patterns. Distinctive contrasts in climatic responses, as suggested from ten synoptic pairs, are clearly evident for Western Beringia versus Eastern Beringia. These results offer important implications for scholars interested in assessing late Quaternary climatic change in the region from interannual to millennial timescales.

Physical forcing mechanisms controlling the variability of chlorophyll-a over the Royal-Charlotte and Abrolhos Banks-Eastern Brazilian Shelf.

PubMed

Ghisolfi, Renato David; Pereira da Silva, Meyre; Thomaz dos Santos, Felipe; Servino, Ricardo Nogueira; Cirano, Mauro; Thompson, Fabiano Lopes

2015-01-01

The Abrolhos Bank is part of the so-called Eastern Brazilian Shelf and is an area of high ecological and economic importance. The bank supports the largest and richest coral reefs in the South Atlantic and the largest rhodolith bed in the world. The spatial and seasonal variation of phytoplankton concentration, however, and the dynamic processes controlling that variability have remained poorly known. The present study investigates the seasonal and spatial distributions of chlorophyll-a (Chl-a) and water conditions by analyzing nine years (2003-2011) of level-3 Moderate-resolution Imaging Spectroradiometer (MODIS) derived Chl-a, National Centers for Environmental Prediction (NCEP)/ETA model-derived winds, NCEP model-derived heat fluxes, thermohaline and velocity results from the Hybrid Circulation Ocean Model (HYCOM) 1/12o assimilated simulation. The results show that low/high concentrations occurred in austral spring-summer (wet season)/autumn-winter (dry season), with the highest values observed in the northern portion of the Abrolhos Bank. The typical meteorological and oceanographic conditions during austral summer favor the development of strong stratification. These conditions are 1) N-NE winds that favor an upwelling-type Ekman circulation; 2) coupling between the open ocean and the continental shelf through the western boundary current, which promotes cooler subsurface water to rise onto the shelf break; and 3) positive net heat flux. In contrast, the S-SE winds during autumn are in the opposite direction of the predominant current system over the Abrolhos Bank, thus reducing their speed and inducing an inverse shear. The warmer ocean and a somewhat cool and dry atmosphere promote the evaporative cooling of the surface layer. The above processes drive mixed layer cooling and deepening that reaches its maximum in winter. The blooming of phytoplankton in the Abrolhos Bank waters appears to be regulated by changes in the mixed layer depth, with Chl-a levels that start to increase during autumn and reach their peak in June-July.

Musculoskeletal disorders among bank office workers in Kuwait.

PubMed

Akrouf, Q A S; Crawford, J O; Al-Shatti, A S; Kamel, M I

2010-01-01

This cross-sectional observational study assessed the pattern of musculoskeletal disorder (MSDs) suffered by bank office workers in Kuwait. A self-administered validated questionnaire was used that included the Nordic musculoskeletal questionnaire and 12-item general health questionnaire (GHQ12). Of 750 employees, 80% suffered at least 1 episode of MSD during the previous year and 42% suffered at least 1 disabling episode. The most affected body parts were the neck (53.5%), lower back (51.1%), shoulders (49.2%) and upper back (38.4%). Nationality, GHQ12 score, smoking and sex were significant predictors of MSDs during the previous year, while alcohol drinking, marital status, GHQ12 score, years in Kuwait and sex were significant predictors of disabling MSDs during the previous year.

Effects produced by CDU improvement of resist pattern with PEB temperature control for wiring resistance variation reduction

NASA Astrophysics Data System (ADS)

Tadokoro, Masahide; Shinozuka, Shinichi; Ogata, Kunie; Morimoto, Tamotsu

2008-03-01

Semiconductor manufacturing technology has shifted towards finer design rules, and demands for critical dimension uniformity (CDU) of resist patterns have become greater than ever. One of the methods for improving CDU of resist pattern is to control the temperature of post-exposure bake (PEB). When ArF resist is used, there is a certain relationship between critical dimension (CD) and PEB temperature. By utilizing this relationship, Resist Pattern CDU can be improved through control of within-wafer temperature distribution in the PEB process. We have already applied this method to Resist Pattern CDU improvement and have achieved these results. In this evaluation, we aim at: 1. Clarifying the relationship between the improvement in Resist Pattern CDU through PEB temperature control and the improvement in Etching Pattern CDU. 2. Verifying whether Resist Pattern CDU improvement through PEB temperature control has any effect on the reduction in wiring resistance variation. The evaluation procedure is: 1. Preparation of wafers with base film of doped Poly-Si (D-Poly). 2. Creation of two sets of samples on the base, a set of samples with good Resist Pattern CDU and a set of samples with poor Resist Pattern CDU. 3. Etching of the two sets under the same conditions. 4. Measurements of CD and wiring resistance. We used Optical CD Measurement (OCD) for measurement of resist pattern and etching pattern for the reason that OCD is minimally affected by Line Edge Roughness (LER). As a result, we found that; 1. The improvement in Resist Pattern CDU leads to the improvement in Etching Pattern CDU . 2. The improvement in Resist Pattern CDU has an effect on the reduction in wiring resistance variation. There is a cause-and-effect relationship between wiring resistance variation and transistor characteristics. From this relationship, we expect that the improvement in Resist Pattern CDU through PEB temperature control can contribute to device performance improvement.

Neural Activity Patterns in the Human Brain Reflect Tactile Stickiness Perception.

PubMed

Kim, Junsuk; Yeon, Jiwon; Ryu, Jaekyun; Park, Jang-Yeon; Chung, Soon-Cheol; Kim, Sung-Phil

2017-01-01

Our previous human fMRI study found brain activations correlated with tactile stickiness perception using the uni-variate general linear model (GLM) (Yeon et al., 2017). Here, we conducted an in-depth investigation on neural correlates of sticky sensations by employing a multivoxel pattern analysis (MVPA) on the same dataset. In particular, we statistically compared multi-variate neural activities in response to the three groups of sticky stimuli: A supra-threshold group including a set of sticky stimuli that evoked vivid sticky perception; an infra-threshold group including another set of sticky stimuli that barely evoked sticky perception; and a sham group including acrylic stimuli with no physically sticky property. Searchlight MVPAs were performed to search for local activity patterns carrying neural information of stickiness perception. Similar to the uni-variate GLM results, significant multi-variate neural activity patterns were identified in postcentral gyrus, subcortical (basal ganglia and thalamus), and insula areas (insula and adjacent areas). Moreover, MVPAs revealed that activity patterns in posterior parietal cortex discriminated the perceptual intensities of stickiness, which was not present in the uni-variate analysis. Next, we applied a principal component analysis (PCA) to the voxel response patterns within identified clusters so as to find low-dimensional neural representations of stickiness intensities. Follow-up clustering analyses clearly showed separate neural grouping configurations between the Supra- and Infra-threshold groups. Interestingly, this neural categorization was in line with the perceptual grouping pattern obtained from the psychophysical data. Our findings thus suggest that different stickiness intensities would elicit distinct neural activity patterns in the human brain and may provide a neural basis for the perception and categorization of tactile stickiness.

Neural Activity Patterns in the Human Brain Reflect Tactile Stickiness Perception

PubMed Central

Kim, Junsuk; Yeon, Jiwon; Ryu, Jaekyun; Park, Jang-Yeon; Chung, Soon-Cheol; Kim, Sung-Phil

2017-01-01

Our previous human fMRI study found brain activations correlated with tactile stickiness perception using the uni-variate general linear model (GLM) (Yeon et al., 2017). Here, we conducted an in-depth investigation on neural correlates of sticky sensations by employing a multivoxel pattern analysis (MVPA) on the same dataset. In particular, we statistically compared multi-variate neural activities in response to the three groups of sticky stimuli: A supra-threshold group including a set of sticky stimuli that evoked vivid sticky perception; an infra-threshold group including another set of sticky stimuli that barely evoked sticky perception; and a sham group including acrylic stimuli with no physically sticky property. Searchlight MVPAs were performed to search for local activity patterns carrying neural information of stickiness perception. Similar to the uni-variate GLM results, significant multi-variate neural activity patterns were identified in postcentral gyrus, subcortical (basal ganglia and thalamus), and insula areas (insula and adjacent areas). Moreover, MVPAs revealed that activity patterns in posterior parietal cortex discriminated the perceptual intensities of stickiness, which was not present in the uni-variate analysis. Next, we applied a principal component analysis (PCA) to the voxel response patterns within identified clusters so as to find low-dimensional neural representations of stickiness intensities. Follow-up clustering analyses clearly showed separate neural grouping configurations between the Supra- and Infra-threshold groups. Interestingly, this neural categorization was in line with the perceptual grouping pattern obtained from the psychophysical data. Our findings thus suggest that different stickiness intensities would elicit distinct neural activity patterns in the human brain and may provide a neural basis for the perception and categorization of tactile stickiness. PMID:28936171

Phylogenetic congruence of lichenised fungi and algae is affected by spatial scale and taxonomic diversity.

PubMed

Buckley, Hannah L; Rafat, Arash; Ridden, Johnathon D; Cruickshank, Robert H; Ridgway, Hayley J; Paterson, Adrian M

2014-01-01

The role of species' interactions in structuring biological communities remains unclear. Mutualistic symbioses, involving close positive interactions between two distinct organismal lineages, provide an excellent means to explore the roles of both evolutionary and ecological processes in determining how positive interactions affect community structure. In this study, we investigate patterns of co-diversification between fungi and algae for a range of New Zealand lichens at the community, genus, and species levels and explore explanations for possible patterns related to spatial scale and pattern, taxonomic diversity of the lichens considered, and the level sampling replication. We assembled six independent datasets to compare patterns in phylogenetic congruence with varied spatial extent of sampling, taxonomic diversity and level of specimen replication. For each dataset, we used the DNA sequences from the ITS regions of both the fungal and algal genomes from lichen specimens to produce genetic distance matrices. Phylogenetic congruence between fungi and algae was quantified using distance-based redundancy analysis and we used geographic distance matrices in Moran's eigenvector mapping and variance partitioning to evaluate the effects of spatial variation on the quantification of phylogenetic congruence. Phylogenetic congruence was highly significant for all datasets and a large proportion of variance in both algal and fungal genetic distances was explained by partner genetic variation. Spatial variables, primarily at large and intermediate scales, were also important for explaining genetic diversity patterns in all datasets. Interestingly, spatial structuring was stronger for fungal than algal genetic variation. As the spatial extent of the samples increased, so too did the proportion of explained variation that was shared between the spatial variables and the partners' genetic variation. Different lichen taxa showed some variation in their phylogenetic congruence and spatial genetic patterns and where greater sample replication was used, the amount of variation explained by partner genetic variation increased. Our results suggest that the phylogenetic congruence pattern, at least at small spatial scales, is likely due to reciprocal co-adaptation or co-dispersal. However, the detection of these patterns varies among different lichen taxa, across spatial scales and with different levels of sample replication. This work provides insight into the complexities faced in determining how evolutionary and ecological processes may interact to generate diversity in symbiotic association patterns at the population and community levels. Further, it highlights the critical importance of considering sample replication, taxonomic diversity and spatial scale in designing studies of co-diversification.

Selection and sex-biased dispersal in a coastal shark: the influence of philopatry on adaptive variation.

PubMed

Portnoy, D S; Puritz, J B; Hollenbeck, C M; Gelsleichter, J; Chapman, D; Gold, J R

2015-12-01

Sex-biased dispersal is expected to homogenize nuclear genetic variation relative to variation in genetic material inherited through the philopatric sex. When site fidelity occurs across a heterogeneous environment, local selective regimes may alter this pattern. We assessed spatial patterns of variation in nuclear-encoded, single nucleotide polymorphisms (SNPs) and sequences of the mitochondrial control region in bonnethead sharks (Sphyrna tiburo), a species thought to exhibit female philopatry, collected from summer habitats used for gestation. Geographic patterns of mtDNA haplotypes and putatively neutral SNPs confirmed female philopatry and male-mediated gene flow along the northeastern coast of the Gulf of Mexico. A total of 30 outlier SNP loci were identified; alleles at over half of these loci exhibited signatures of latitude-associated selection. Our results indicate that in species with sex-biased dispersal, philopatry can facilitate sorting of locally adaptive variation, with the dispersing sex facilitating movement of potentially adaptive variation among locations and environments. © 2015 John Wiley & Sons Ltd.

Signal polymorphism under a constant environment: the odd cross in a web decorating spider

NASA Astrophysics Data System (ADS)

Walter, André; Elgar, Mark A.

2016-12-01

The quality of many animal signals varies, perhaps through their use in different contexts or by representing an adaptive response to reduce the risk of exploitation. Spiders of the orb weaver genus Argiope add linear, cruciate or circular silk structures to their orb webs, creating inter- and intra-specific polymorphic visual signals. Different decoration patterns are frequently attributed to different signal effects, but this view is contradicted by commonly observed intraspecific variation in decorating behaviour. Adults of Argiope mascordi are bimodal web decorators, building two distinct patterns, circular and cruciate silk structures. We investigated the variation of patterns under controlled, invariant laboratory conditions. Circular decorations were most frequent, but individuals often switch to the other pattern. This variation neither increased nor decreased over time, suggesting that pattern variability is primarily intrinsic rather than an exclusive response to environmental changes. Accordingly, we discuss the evolutionary implications in the light of the conservation of a single signal function through maintaining the variation of its quality and the alternative view that silk decorations may not represent adaptive signals at all.

The dynamics of bedrock channel adjustment: Modeling the influence of sediment supply, weathering, and lithology on channel cross-sectional and longitudinal shape

NASA Astrophysics Data System (ADS)

Wobus, C.; Tucker, G.; Anderson, R.; Kean, J.; Small, E.; Hancock, G.

2007-12-01

The cross-sectional form of a natural river channel controls the capacity of the system to carry water off a landscape, to convey sediment derived from hillslopes, and to erode its bed and banks. Numerical models that describe the response of a landscape to changes in climate or tectonics therefore require formulations that can accommodate changes in channel cross-sectional geometry through time. We have developed a 2D numerical model that computes the formation of a channel in a cohesive, detachment-limited substrate subject to steady, unidirectional flow. Boundary shear stress is calculated using a simple approximation of the flow field in which log-velocity profiles are assumed to apply along vectors that are perpendicular to the local boundary surface. The resulting model predictions for the velocity structure, peak boundary shear stress, and equilibrium channel shape compare well with the predictions of a more sophisticated but more computationally demanding ray-isovel model. For example, the mean velocities computed by the two models are consistent to within ~3%, and the predicted peak shear stress is consistent to within ~7%. The efficiency of our model makes it suitable for calculations of long-term morphologic change both in single cross-sections and in series of cross-sections arrayed downstream. For a uniform substrate, the model predicts a strong tendency toward a fixed width-to-depth ratio, regardless of gradient or discharge. The model predicts power-law relationships between width and discharge with an exponent near 2/5, and between width and gradient with an exponent near -1/5. Recent enhancements to the model include the addition of sediment, which increases the width-to-depth ratio at steady state by favoring erosion of the channel walls relative to the channel bed (the "cover effect"). Inclusion of a probability density function of discharges with a simple parameterization of weathering along channel banks leads to the formation of model strath terraces. Downstream changes in substrate erodibility or tectonic uplift rate lead to step-function changes in channel width, consistent with empirical observations. Finally, explicit inclusion of bedload transport allows channel width, gradient, and the pattern of sediment flux to evolve dynamically, allowing us to explore the response of bedrock channels to both spatial patterns of rock uplift, and temporal variations in sediment input.

Analysis of network clustering behavior of the Chinese stock market

NASA Astrophysics Data System (ADS)

Chen, Huan; Mai, Yong; Li, Sai-Ping

2014-11-01

Random Matrix Theory (RMT) and the decomposition of correlation matrix method are employed to analyze spatial structure of stocks interactions and collective behavior in the Shanghai and Shenzhen stock markets in China. The result shows that there exists prominent sector structures, with subsectors including the Real Estate (RE), Commercial Banks (CB), Pharmaceuticals (PH), Distillers&Vintners (DV) and Steel (ST) industries. Furthermore, the RE and CB subsectors are mostly anti-correlated. We further study the temporal behavior of the dataset and find that while the sector structures are relatively stable from 2007 through 2013, the correlation between the real estate and commercial bank stocks shows large variations. By employing the ensemble empirical mode decomposition (EEMD) method, we show that this anti-correlation behavior is closely related to the monetary and austerity policies of the Chinese government during the period of study.

Mid- to late-Holocene environmental evolution of the Loire estuary as observed from sedimentary characteristics and benthic foraminiferal assemblages

NASA Astrophysics Data System (ADS)

Durand, M.; Mojtahid, M.; Maillet, G. M.; Proust, J.-N.; Lehay, D.; Ehrhold, A.; Barré, A.; Howa, H.

2016-12-01

We used sedimentological and foraminiferal characteristics of four sedimentary cores, supported by paleogeographical and historical data, to reconstruct the depositional history of the inner Loire estuary (Near Saint-Nazaire, France) and the response of benthic foraminifera to the mid- to late-Holocene marine flooding of the incised valley. These were further used to evaluate the consequent changes in estuarine morphological and hydro-sedimentary patterns during this time period. Our results described significant changes in hydro-sedimentary dynamics over the past 6 kyrs BP. At our location, these changes expressed the combined influence of marine (e.g., tide, storm waves) and fluvial dynamics (e.g., floods), which are linked, on a broader scale, to sea-level variations and the regional climate regime. Three main periods stand out: (1) from 6.0 to 2.5 kyrs BP, when the sea-level rise slowed down, a large brackish bay extended over and around the study area. The fine-grained tidal rythmites recorded north of the Bilho bank (the main tidal bar located in our study area) indicated a calm depositional environment, protected from the main riverine influence. The presence of thick flood deposits from 5.4 to 4.0 kyrs BP near the Bilho bank indicates further the dominance of humid conditions. (2) From 2.5 kyrs BP to 1850 CE (pre-industrial state), sea-level stabilized at its present value, and the pre-existing bay was progressively infilled. North of the Bilho bank, near a major mudflat (Méan), the generally homogenous sedimentation composed of silty muds rich in organic matter indicated a sheltered environment; the main water flow channel being located south of the Bilho bank. Within this overall homogenous sedimentation, foraminiferal assemblages described rather accurately the progressive infilling of the valley (indicated by a decrease in the proportions of outer estuarine species), accompanied with the channelization of the main entering marine currents (tide, storm waves) (indicated by an increase in the proportions of transported species from the adjacent upper continental shelf), and finally the buildup of the Méan mudflat and the stabilization of the environment to its present day configuration (indicated by the dominance of autochthonous inner estuarine species). (3) Since 1850 CE, the human impact progressively modified the general landscape of our study area with the construction of the Saint-Nazaire shipyard, the digging of the northern navigation channel and the polderization of the northern Bay. The southern channel was progressively abandoned by the main water flow in favor of the newly dug northern channel, causing the southern migration of the Bilho sandbank and the progressive filling of the southern channel.

Child Health in China. World Bank Staff Working Papers, Number 767.

ERIC Educational Resources Information Center

Young, Mary E.; Prost, Andre

Utilizing mainly Chinese publications, this paper reviews the existing data on childhood diseases in order to assess the health status and morbidity patterns of Chinese children. China's infant mortality rate is among the very lowest in the developing world. The number of post-neonatal deaths as a proportion of total infant deaths has decreased to…

Shifting migration patterns without genetic erosion: evidence from the Zamia pumila complex (Cycadales: Zamiaceae) at the northern of the Caribbean island biodiversity hotspot

USDA-ARS?s Scientific Manuscript database

The Bahamas archipelago is the northernmost land area of the Caribbean island biodiversity hotspot (CIBH). It is defined by several banks composed of quaternary carbonates that are tectonically stable. Such stability has provided direct geological evidence of global ice-volume changes that is valuab...

Financing Vocational Training in Sub-Saharan Africa. Africa Region Human Development Series.

ERIC Educational Resources Information Center

Ziderman, Adrian

This document is part of the World Bank's comprehensive study of post-basic education and training in Sub-Sahara Africa and includes findings from three short field studies conducted in South Africa, Tanzania, and Zimbawe in early 2001. Chapter titles are as follows: Executive Summary; Introduction; Conventional Patterns of Financing Training;…

The Impact of Changing Affluence on Diet and Demand Patterns for Agricultural Commodities. World Bank Staff Working Papers Number 785.

ERIC Educational Resources Information Center

Chaudhri, Rajiv; Timmer, C. Peter

Demand for agricultural commodities, particularly for basic food-stuffs, depends on a household's income, competitive prices, and a set of unique household characteristics which include tastes, location, education, family composition, and farm status. This monograph reviews disaggregated evidence at the national level on the relative contribution…

Using Stream Classification to Prioritize Riparian Rehabilitation After Extreme Events

Treesearch

Sherman Swanson

1989-01-01

Historic use of many stream riparian areas and associated watersheds has impaired the capacity of riparian vegetation and floodplains to reduce stream energy and trap sediments. As low-gradient streams with erodible banks increase in width and change their pattern, they approach a threshold of instability. Once a stream exceeds a threshold, it must proceed through a...

The Heart´s rhythm 'n' blues: Sex differences in circadian variation patterns of vagal activity vary by depressive symptoms in predominantly healthy employees.

PubMed

Jarczok, Marc N; Aguilar-Raab, Corina; Koenig, Julian; Kaess, Michael; Borniger, Jeremy C; Nelson, Randy J; Hall, Martica; Ditzen, Beate; Thayer, Julian F; Fischer, Joachim E

2018-03-15

Successful regulation of emotional states is positively associated to mental health, while difficulties in regulating emotions are negatively associated to overall mental health and in particular associated with anxiety or depression symptoms. A key structure associated to socio-emotional regulatory processes is the central autonomic network. Activity in this structure is associated to vagal activity can be indexed noninvasively and simply by measures of peripheral cardiac autonomic modulations such as heart rate variability. Vagal activity exhibits a circadian variation pattern, with a maximum during nighttime. Depression is known to affect chronobiology. Also, depressive symptoms are known to be associated with decreased resting state vagal activity, but studies investigating the association between circadian variation pattern of vagal activity and depressive symptoms are scarce. We aim to examine these patterns in association to symptom severity of depression using chronobiologic methods. Data from the Manheim Industrial Cohort Studies (MICS) were used. A total of 3,030 predominantly healthy working adults underwent, among others, ambulatory 24-h hear rate-recordings, detailed health examination and online questionnaires and were available for this analysis. The root mean sum of successive differences (RMSSD) was used as an indicator of vagally mediated heart rate variability. Three individual-level cosine function parameters (MESOR, amplitude, acrophase) were estimated to quantify circadian variation pattern. Multivariate linear regression models including important covariates such as age, sex, and lifestyle factors as well as an interaction effect of sex with depressive symptoms were used to estimate the association of circadian variation pattern of vagal activity with depressive symptoms simultaneously. The analysis sample consisted of 20.2% females and an average age 41 with standard deviation of 11 years. Nonparametric bivariate analysis revealed significant MESOR and amplitude differences between the 90 th percentile split, but not on acrophase. Multivariate linear regression models estimated depressive symptoms to be negatively associated with the 24h mean (MESOR) and oscillation amplitude in men but positively associated in women. This pattern of findings indicates a blunted day-night rhythm of vagal activity in men with greater depressive symptoms as well as a moderation effect of sex in the association of CVP and depressive symptoms. This is the first study investigating circadian variation pattern by mild depressive symptoms in a large, rather healthy occupational sample. Depressive symptoms were associated with decreased circadian variation pattern of vagal activity in men but with increased circadian variation pattern in women. The possible underlying mechanism(s) are discussed using the neurovisceral integration model. These findings may have implications for the knowledge on etiology, diagnosis, course, and treatment of depressive symptoms and thus may be of significant public health relevance.

[Angiographic evaluation of branching pattern and anatomy of the aortic arch].

PubMed

Ergun, Onur; Tatar, İdil Güneş; Birgi, Erdem; Durmaz, Hasan Ali; Akçalar, Seray; Kurt, Aydın; Hekimoğlu, Baki

2015-04-01

The study aimed to investigate anatomical variations in branching pattern and anatomy of the aortic arch, and the prevalence of each type. Between September 2011 and November 2013, angiographic studies of 270 patients (144 male, 126 female) were analyzed retrospectively for variations in branching pattern and anatomy of the aortic arch. Patient mean age was 59.8 years (range, 13-88). Branching variations were found and divided into subtypes. Patients were also classified according to arch anatomy. Incidence of variations and types of aortic arch were statistically analysed. Analysis of the 270 patients revealed six types of branching pattern. Type I, classical pattern arch with three branches (TB, LCC, LS), was observed in 198 cases (73.3%). Type II (bovine arch), the most commonly observed variation, in which LCC originates from TB, was observed in 58 cases (21.5%). Type III, in which the left vertebral artery arises from the arch, was seen in seven cases (2.6%). Type IV, a combination of types II and III, was observed in three cases (1.1%). Type V, common origin of common carotids, LS and aberrant RS, was found in three cases (1.1%). Type VI (avian type), arch with only two branches, was observed in one case (0.4%). When patients were classified according to aortic arch anatomy, Type 1, Type 2 and Type 3 were observed in 195, 40 and 35 patients respectively. Knowledge of the variations and anatomy of the aortic arch is essential during interventional procedures and neck-thorax surgery.

[Serological screening for Trypanosoma cruzi among blood donors in central Brazil].

PubMed

de Andrade, A L; Martelli, C M; Luquetti, A O; de Oliveira, O S; Almeida e Silva, S; Zicker, F

1992-07-01

The present study compares the results of serological screening for Trypanosoma cruzi infection done at blood banks with results obtained in Chagas' disease studies undertaken by the Reference Laboratory of the Federal University of Goiás (UFG) and evaluates the use of the enzyme-linked immunosorbent assay (ELISA) for this purpose. The study was conducted with data from six of the eight blood banks in the city of Goiânia in central Brazil, an urban area in which this infection is highly endemic. The population studied consisted of 1,513 volunteers who had donated blood for the first time between October 1988 and April 1989. The sample represented 50% of all first-time blood donors during the period. Of these donors, 94% were residents of urban areas, and of these, approximately 26% had migrated from the countryside. Nearly 90% of the blood donations in the city are received at these banks, which normally use the indirect hemagglutination and complement-fixation tests. The samples selected for the study of T. cruzi antibody in first-time blood donors were assayed at the Reference Laboratory of the Federal University of Goiás using the indirect hemagglutination (IH), indirect immunofluorescence (IF), and enzyme-linked immunosorbent assay (ELISA) tests, independently of the serological classification performed by the blood banks. Comparison of the results provided by the latter with the positivity pattern established in the study (IH and IF yielded simultaneous positive results in the Reference Laboratory) revealed a relative sensitivity of 77%, with extremes ranging between 50% and 100%, depending on the blood bank studied.(ABSTRACT TRUNCATED AT 250 WORDS)

Seed banks of native forbs, but not exotic grasses, increase during extreme drought.

PubMed

LaForgia, Marina L; Spasojevic, Marko J; Case, Erica J; Latimer, Andrew M; Harrison, Susan P

2018-04-01

Extreme droughts such as the one that affected California in 2012-2015 have been linked to severe ecological consequences in perennial-dominated communities such as forests. In annual communities, drought impacts are difficult to assess because many species persist through facultative multiyear seed dormancy, which leads to the development of seed banks. Impacts of extreme drought on the abundance and composition of the seed banks of whole communities are little known. In 80 heterogeneous grassland plots where cover is dominated by ~15 species of exotic annual grasses and diversity is dominated by ~70 species of native annual forbs, we grew out seeds from soil cores collected early in the California drought (2012) and later in the multiyear drought (2014), and analyzed drought-associated changes in the seed bank. Over the course of the study we identified more than 22,000 seedlings to species. We found that seeds of exotic annual grasses declined sharply in abundance during the drought while seeds of native annual forbs increased, a pattern that resembled but was even stronger than the changes in aboveground cover of these groups. Consistent with the expectation that low specific leaf area (SLA) is an indicator of drought tolerance, we found that the community-weighted mean SLA of annual forbs declined both in the seed bank and in the aboveground community, as low-SLA forbs increased disproportionately. In this system, seed dormancy reinforces the indirect benefits of extreme drought to the native forb community. © 2018 by the Ecological Society of America.

Germination and soil seed bank traits of Podocarpus angustifolius (Podocarpaceae): an endemic tree species from Cuban rain forests.

PubMed

Ferrandis, Pablo; Bonilla, Marta; Osorio, Licet del Carmen

2011-09-01

Podocarpus angustifolius is an endangered recalcitrant-seeded small tree, endemic to mountain rain forests in the central and Pinar del Río regions in Cuba. In this study, the germination patterns of P. angustifolius seeds were evaluated and the nature of the soil seed bank was determined. Using a weighted two-factor design, we analyzed the combined germination response to seed source (i.e. freshly matured seeds directly collected from trees versus seeds extracted from soil samples) and pretreatment (i.e. seed water-immersion for 48h at room temperature). Germination was delayed for four weeks (= 30 days) in all cases, regardless of both factors analyzed. Moreover, nine additional days were necessary to achieve high germination values (in the case of fresh, pretreated seeds). These results overall may indicate the existence of a non-deep simple morphophysiological dormancy in P. angustifolius seeds. The water-immersion significantly enhanced seed germination, probably as a result of the hydration of recalcitrant seeds. Although germination of seeds extracted from soil samples was low, probably due to aging and pathogen effects throughout the time of burial, the study revealed the existence of a persistent soil seed bank (at least short-termed) of approximately 42 viable seeds per m2 in the upper 10cm of soil. Such a record is noteworthy since references to persistent soil seed banks in recalcitrant-seeded species are scarce in the literature. The population consequences derived from the formation of persistent soil seed banks in this endangered species are discussed.

Diurnal variations in maize and soybean vegetation indices from continuous measurements of ground-based spectral reflectance

NASA Astrophysics Data System (ADS)

Arkebauer, T. J.; Walter-Shea, E. A.

2017-12-01

Vegetation indices, based on canopy spectral reflectance, are widely used to infer physical and biological characteristics of vegetation. Understanding the changes in remotely sensed signals as vegetation responds to its changing environment is essential for full assessment of canopy structure and function. Canopy-level reflectance has been measured at Nebraska AmeriFlux sites US-Ne1, US-Ne2 and US-Ne3 for most years since flux measurements were initiated in 2001. Tower-mounted spectral sensors provided 10-minute averaged reflectance (in PAR and NIR spectral regions) every half hour through the growing season for maize and soybean. Canopy reflectance varied over diurnal and seasonal time periods which led to variations in vegetation indices. One source of variation is due to the interaction of incident solar radiant energy with canopy structure (e.g., reflectance varies with changes in solar zenith angle and direct beam fraction, vegetative fraction, and leaf angle distribution). Another source of variation results from changes in canopy function (e.g., fluctuations in gross primary production and invocation of photoprotective mechanisms with plant stress). We present here a series of diurnal "patterns" of vegetation indices (including Normalized Difference Vegetation Index and Chlorophyll Index) for maize and soybean under mostly clear sky conditions. We demonstrate that diurnal patterns change as the LAI of the canopy changes through the course of the growing season in a somewhat predictable pattern from plant emergence (low vegetative cover) through peak green LAI (full vegetation cover). However, there are changes in the diurnal pattern that we have yet to fully understand; this variation in pattern may indicate variation in canopy function. Initially, we have explored the pattern changes qualitatively and are currently developing more quantitative approaches.

Size variation, growth strategies, and the evolution of modularity in the mammalian skull.

PubMed

Porto, Arthur; Shirai, Leila Teruko; de Oliveira, Felipe Bandoni; Marroig, Gabriel

2013-11-01

Allometry is a major determinant of within-population patterns of association among traits and, therefore, a major component of morphological integration studies. Even so, the influence of size variation over evolutionary change has been largely unappreciated. Here, we explore the interplay between allometric size variation, modularity, and life-history strategies in the skull from representatives of 35 mammalian families. We start by removing size variation from within-species data and analyzing its influence on integration magnitudes, modularity patterns, and responses to selection. We also carry out a simulation in which we artificially alter the influence of size variation in within-taxa matrices. Finally, we explore the relationship between size variation and different growth strategies. We demonstrate that a large portion of the evolution of modularity in the mammalian skull is associated to the evolution of growth strategies. Lineages with highly altricial neonates have adult variation patterns dominated by size variation, leading to high correlations among traits regardless of any underlying modular process and impacting directly their potential to respond to selection. Greater influence of size variation is associated to larger intermodule correlations, less individualized modules, and less flexible responses to natural selection. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico

PubMed Central

Green, Elizabeth A.; Davies, Sarah W.; Matz, Mikhail V.

2014-01-01

The genetic composition of the resident Symbiodinium endosymbionts can strongly modulate the physiological performance of reef-building corals. Here, we used quantitative metabarcoding to investigate Symbiodinium genetic diversity in two species of mountainous star corals, Orbicella franksi and Orbicella faveolata, from two reefs separated by 19 km of deep water. We aimed to determine if the frequency of different symbiont genotypes varied with respect to coral host species or geographic location. Our results demonstrate that across the two reefs both coral species contained seven haplotypes of Symbiodinium, all identifiable as clade B and most closely related to type B1. Five of these haplotypes have not been previously described and may be endemic to the Flower Garden Banks. No significant differences in symbiont composition were detected between the two coral species. However, significant quantitative differences were detected between the east and west banks for three background haplotypes comprising 0.1%–10% of the total. The quantitative metabarcoding approach described here can help to sensitively characterize cryptic genetic diversity of Symbiodinium and potentially contribute to the understanding of physiological variations among coral populations. PMID:24883247

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico.

PubMed

Green, Elizabeth A; Davies, Sarah W; Matz, Mikhail V; Medina, Mónica

2014-01-01

The genetic composition of the resident Symbiodinium endosymbionts can strongly modulate the physiological performance of reef-building corals. Here, we used quantitative metabarcoding to investigate Symbiodinium genetic diversity in two species of mountainous star corals, Orbicella franksi and Orbicella faveolata, from two reefs separated by 19 km of deep water. We aimed to determine if the frequency of different symbiont genotypes varied with respect to coral host species or geographic location. Our results demonstrate that across the two reefs both coral species contained seven haplotypes of Symbiodinium, all identifiable as clade B and most closely related to type B1. Five of these haplotypes have not been previously described and may be endemic to the Flower Garden Banks. No significant differences in symbiont composition were detected between the two coral species. However, significant quantitative differences were detected between the east and west banks for three background haplotypes comprising 0.1%-10% of the total. The quantitative metabarcoding approach described here can help to sensitively characterize cryptic genetic diversity of Symbiodinium and potentially contribute to the understanding of physiological variations among coral populations.

Analysis of power gating in different hierarchical levels of 2MB cache, considering variation

NASA Astrophysics Data System (ADS)

Jafari, Mohsen; Imani, Mohsen; Fathipour, Morteza

2015-09-01

This article reintroduces power gating technique in different hierarchical levels of static random-access memory (SRAM) design including cell, row, bank and entire cache memory in 16 nm Fin field effect transistor. Different structures of SRAM cells such as 6T, 8T, 9T and 10T are used in design of 2MB cache memory. The power reduction of the entire cache memory employing cell-level optimisation is 99.7% with the expense of area and other stability overheads. The power saving of the cell-level optimisation is 3× (1.2×) higher than power gating in cache (bank) level due to its superior selectivity. The access delay times are allowed to increase by 4% in the same energy delay product to achieve the best power reduction for each supply voltages and optimisation levels. The results show the row-level power gating is the best for optimising the power of the entire cache with lowest drawbacks. Comparisons of cells show that the cells whose bodies have higher power consumption are the best candidates for power gating technique in row-level optimisation. The technique has the lowest percentage of saving in minimum energy point (MEP) of the design. The power gating also improves the variation of power in all structures by at least 70%.

Phase Evolution of the Crab Pulsar between Radio and X-Ray

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, L. L.; Ge, M. Y.; Zheng, S. J.

We study the X-ray phases of the Crab pulsar utilizing the 11-year observations from the Rossi X-ray Timing Explorer , 6-year radio observations from Nanshan Telescope, and the ephemeris from Jodrell Bank Observatory. It is found that the X-ray phases in different energy bands and the radio phases from the Nanshan Telescope show similar behaviors, including long-time evolution and short-time variations. Such strong correlations between the X-ray and radio phases imply that the radio and X-ray timing noises are both generated from the pulsar spin that cannot be well described by the the monthly ephemeris from the Jodrell Bank observatory.more » When using the Nanshan phases as references to study the X-ray timing noise, it has a significantly smaller variation amplitude and shows no long-time evolution, with a change rate of (−1.1 ± 1.1) × 10{sup −7} periods per day. These results show that the distance of the X-ray and radio emission regions on the Crab pulsar has no detectable secular change, and it is unlikely that the timing noises resulted from any unique physical processes in the radio or X-ray emitting regions. The similar behaviors of the X-ray and radio timing noises also imply that the variation of the interstellar medium is not the origin of the Crab pulsar’s timing noises, which is consistent with the results obtained from the multi-frequency radio observations of PSR B1540−06.« less

High-Resolution Inkjet-Printed Oxide Thin-Film Transistors with a Self-Aligned Fine Channel Bank Structure.

PubMed

Zhang, Qing; Shao, Shuangshuang; Chen, Zheng; Pecunia, Vincenzo; Xia, Kai; Zhao, Jianwen; Cui, Zheng

2018-05-09

A self-aligned inkjet printing process has been developed to construct small channel metal oxide (a-IGZO) thin-film transistors (TFTs) with independent bottom gates on transparent glass substrates. Poly(methylsilsesquioxane) was used to pattern hydrophobic banks on the transparent substrate instead of commonly used self-assembled octadecyltrichlorosilane. Photolithographic exposure from backside using bottom-gate electrodes as mask formed hydrophilic channel areas for the TFTs. IGZO ink was selectively deposited by an inkjet printer in the hydrophilic channel region and confined by the hydrophobic bank structure, resulting in the precise deposition of semiconductor layers just above the gate electrodes. Inkjet-printed IGZO TFTs with independent gate electrodes of 10 μm width have been demonstrated, avoiding completely printed channel beyond the broad of the gate electrodes. The TFTs showed on/off ratios of 10 8 , maximum mobility of 3.3 cm 2 V -1 s -1 , negligible hysteresis, and good uniformity. This method is conductive to minimizing the area of printed TFTs so as to the development of high-resolution printing displays.

Behavioural development of conspecific odour preferences in bank voles, Clethrionomys glareolus.

PubMed

Kruczek, Malgorzata; Golas, Aniela

2003-08-29

Biological odours of conspecifics are known to have strong influences on behavioural interaction in bank voles Clethrionomys glareolus. This experiment tested two hypotheses. (1) Olfactory cues from familiar and unfamiliar mature opposite-sex conspecifics differ in their attractiveness to males and females, and their behavioural reactions change with age. (2) A genetically based mechanism is involved in female recognition of kin.In a two-choice preference test, prepubertal males and females were more attracted to familiar than to unfamiliar odours of opposite-sex conspecifics, as manifested by more time spent sniffing familiar voles. As the young reached sexual maturity they shifted their odour preferences. Mature males and females preferred the novel odour of unrelated opposite-sex conspecifics to that of relatives. The results of experiments testing the second hypothesis indicate that females use a genetically based mechanism to recognise their kin. Young and mature females were able to recognise the odour of their biological but socially unknown fathers, and showed the same pattern of behaviour as females in previous experiments.The possible biological functions of kin recognition in bank voles are discussed.

Bank note recognition for the vision impaired.

PubMed

Hinwood, A; Preston, P; Suaning, G J; Lovell, N H

2006-06-01

Blind Australians find great difficulty in recognising bank notes. Each note has the same feel, with no Braille markings, irregular edges or other tangible features. In Australia, there is only one device available that can assist blind people recognise their notes. Internationally, there are devices available; however they are expensive, complex and have not been developed to cater for Australian currency. This paper discusses a new device, the MoneyTalker that takes advantage of the largely different colours and patterns on each Australian bank note and recognises the notes electronically, using the reflection and transmission properties of light. Different coloured lights are transmitted through the inserted note and the corresponding sensors detect distinct ranges of values depending on the colour of the note. Various classification algorithms were studied and the final algorithm was chosen based on accuracy and speed of recognition. The MoneyTalker has shown an accuracy of more than 99%. A blind subject has tested the device and believes that it is usable, compact and affordable. Based on the devices that are available currently in Australia, the MoneyTalker is an effective alternative in terms of accuracy and usability.

Evaluation of popliteal artery branching patterns and a new subclassification of the 'usual' branching pattern.

PubMed

Celtikci, Pinar; Ergun, Onur; Durmaz, Hasan Ali; Conkbayir, Isik; Hekimoglu, Baki

2017-09-01

To determine the frequency of popliteal artery branching variations in a wide study cohort and to investigate the relationship between these variations and infrapopliteal peripheral arterial disease (PAD). A subclassification was proposed for the most encountered type I-A, utilizing tibio-fibular trunk (TFT) length. A total number of 1184 lower extremity digital subtraction angiography (DSA) studies of 669 patients were evaluated. Following exclusion, 863 lower extremity DSA studies (431 right, 432 left) of 545 patients were enrolled. Popliteal artery branching type, patency of anterior tibial artery (ATA), fibular artery (FA) and posterior tibial artery (PTA) in each extremity and TFT length for type I-A extremities were recorded. Percentages of branching patterns, mean length and cut-off value of TFT and incidence of PAD in different types of branching were calculated. Type I-A was the most common type of branching (81.3%). Frequency of branching pattern variation was 18.7%, the most common variation category was category III (12.2%) and the most common variation type was type III-A (5.6%). ATA and PTA had higher percentages of PAD in extremities with variant branching types. Cut-off value of 3 cm for TFT length was proposed in order to subclassify type I-A. Our study cohort presents a higher incidence of popliteal artery branching variations. Some branching variations might have effect on the involvement pattern of the infrapopliteal arteries by PAD. We propose a subclassification for type I-A; type I-A-S (TFT < 3 cm) and type I-A-L (TFT ≥ 3 cm) which might have impact on interventional procedures.

Redox zonation for different groundwater flow paths during bank filtration: a case study at Liao River, Shenyang, northeastern China

NASA Astrophysics Data System (ADS)

Su, Xiaosi; Lu, Shuai; Yuan, Wenzhen; Woo, Nam Chil; Dai, Zhenxue; Dong, Weihong; Du, Shanghai; Zhang, Xinyue

2018-03-01

The spatial and temporal distribution of redox zones in an aquifer is important when designing groundwater supply systems. Redox zonation can have direct or indirect control of the biological and chemical reactions and mobility of pollutants. In this study, redox conditions are characterized by interpreting the hydrogeological conditions and water chemistry in groundwater during bank infiltration at a site in Shenyang, northeast China. The relevant redox processes and zonal differences in a shallow flow path and deeper flow path at the field scale were revealed by monitoring the redox parameters and chemistry of groundwater near the Liao River. The results show obvious horizontal and vertical components of redox zones during bank filtration. Variations in the horizontal extent of the redox zone were controlled by the different permeabilities of the riverbed sediments and aquifer with depth. Horizontally, the redox zone was situated within 17 m of the riverbank for the shallow flow path and within 200 m for the deep flow path. The vertical extent of the redox zone was affected by precipitation and seasonal river floods and extended to 10 m below the surface. During bank filtration, iron and manganese oxides or hydroxides were reductively dissolved, and arsenic that was adsorbed onto the medium surface or coprecipitated is released into the groundwater. This leads to increased arsenic content in groundwater, which poses a serious threat to water supply security.

Groundwater exchanges near a channelized versus unmodified stream mouth discharging to a subalpine lake

USGS Publications Warehouse

Constantz, James; Naranjo, Ramon C.; Niswonger, Richard G.; Allander, Kip K.; Neilson, B.; Rosenberry, Donald O.; Smith, David W.; Rosecrans, C.; Stonestrom, David A.

2016-01-01

The terminus of a stream flowing into a larger river, pond, lake, or reservoir is referred to as the stream-mouth reach or simply the stream mouth. The terminus is often characterized by rapidly changing thermal and hydraulic conditions that result in abrupt shifts in surface water/groundwater (sw/gw) exchange patterns, creating the potential for unique biogeochemical processes and ecosystems. Worldwide shoreline development is changing stream-lake interfaces through channelization of stream mouths, i.e., channel straightening and bank stabilization to prevent natural meandering at the shoreline. In the central Sierra Nevada (USA), Lake Tahoe's shoreline has an abundance of both “unmodified” (i.e., not engineered though potentially impacted by broader watershed engineering) and channelized stream mouths. Two representative stream mouths along the lake's north shore, one channelized and one unmodified, were selected to compare and contrast water and heat exchanges. Hydraulic and thermal properties were monitored during separate campaigns in September 2012 and 2013 and sw/gw exchanges were estimated within the stream mouth-shoreline continuum. Heat-flow and water-flow patterns indicated clear differences in the channelized versus the unmodified stream mouth. For the channelized stream mouth, relatively modulated, cool-temperature, low-velocity longitudinal streambed flows discharged offshore beneath warmer buoyant lakeshore water. In contrast, a seasonal barrier bar formed across the unmodified stream mouth, creating higher-velocity subsurface flow paths and higher diurnal temperature variations relative to shoreline water. As a consequence, channelization altered sw/gw exchanges potentially altering biogeochemical processing and ecological systems in and near the stream mouth.

Pollutant levels in discarded fish species by Spanish trawlers operating in the Great Sole Bank and the Atlantic coast of the Iberian Peninsula.

PubMed

Antelo, Luis T; Ordóñez-Del Pazo, Tatiana; Lopes, Carla; Franco-Uría, Amaya; Pérez-Martín, Ricardo I; Alonso, Antonio A

2016-07-15

Organic and inorganic pollutant levels were determined for the most discarded species from trawlers operating in Great Sole and Spanish coastal fishing grounds. Results for heavy metals indicated that Cd can reach values higher than legal limits for some species and tissues, while Hg and Pb concentrations are below established values. No significant variation was noticed with fishing grounds, but both season influences in the case of Pb and interspecies variation for Hg and Cd have been detected. Valorization recommendations could be therefore established according to the levels found in the different species. Copyright © 2016 Elsevier Ltd. All rights reserved.

Variational method for integrating radial gradient field

NASA Astrophysics Data System (ADS)

Legarda-Saenz, Ricardo; Brito-Loeza, Carlos; Rivera, Mariano; Espinosa-Romero, Arturo

2014-12-01

We propose a variational method for integrating information obtained from circular fringe pattern. The proposed method is a suitable choice for objects with radial symmetry. First, we analyze the information contained in the fringe pattern captured by the experimental setup and then move to formulate the problem of recovering the wavefront using techniques from calculus of variations. The performance of the method is demonstrated by numerical experiments with both synthetic and real data.

Unveiling the physics of AGN through X-ray variability

NASA Astrophysics Data System (ADS)

Hernández-García, L.; González-Martín, O.; Masegosa, J.; Márquez, I.

2017-03-01

Although variability is a general property characterizing active galactic nuclei (AGN), it is not well established whether the changes occur in the same way in every nuclei. The main purpose of this work is to study the X-ray variability pattern(s) in AGN selected at optical wavelengths in a large sample, including low ionization nuclear emission line regions (LINERs) and type 1.8, 1.9, and 2 Seyferts, using the public archives in Chandra and/or XMM-Newton. Spectra of the same source gathered at different epochs were simultaneously fitted to study long term variations; the variability patterns were studied allowing different parameters to vary during the spectral fit. Whenever possible, short term variations from the analysis of the light curves and long term UV flux variability were studied. Variations at X-rays in timescales of months/years are very common in all AGN families but short term variations are only found in type 1.8 and 1.9 Seyferts. The main driver of the long term X-ray variations seems to be related to changes in the nuclear power. Other variability patterns cannot be discarded in a few cases. We discuss the geometry and physics of AGN through the X-ray variability analysis.

Dental and phylogeographic patterns of variation in gorillas.

PubMed

Pilbrow, Varsha

2010-07-01

Gorilla patterns of variation have great relevance for studies of human evolution. In this study, molar morphometrics were used to evaluate patterns of geographic variation in gorillas. Dental specimens of 323 adult individuals, drawn from the current distribution of gorillas in equatorial Africa were divided into 14 populations. Discriminant analyses and Mahalanobis distances were used to study population structure. Results reveal that: 1) the West and East African gorillas form distinct clusters, 2) the Cross River gorillas are well separated from the rest of the western populations, 3) gorillas from the Virunga mountains and the Bwindi Forest can be differentiated from the lowland gorillas of Utu and Mwenga-Fizi, 4) the Tshiaberimu gorillas are distinct from other eastern gorillas, and the Kahuzi-Biega gorillas are affiliated with them. These findings provide support for a species distinction between Gorilla gorilla and Gorilla beringei, with subspecies G. g. diehli, G. g. gorilla, G. b. graueri, G. b. beringei, and possibly, G. b. rex-pygmaeorum. Clear correspondence between dental and other patterns of taxonomic diversity demonstrates that dental data reveal underlying genetic patterns of differentiation. Dental distances increased predictably with altitude but not with geographic distances, indicating that altitudinal segregation explains gorilla patterns of population divergence better than isolation-by-distance. The phylogeographic pattern of gorilla dental metric variation supports the idea that Plio-Pleistocene climatic fluctuations and local mountain building activity in Africa affected gorilla phylogeography. I propose that West Africa comprised the historic center of gorilla distribution and experienced drift-gene flow equilibrium, whereas Nigeria and East Africa were at the periphery, where climatic instability and altitudinal variation promoted drift and genetic differentiation. This understanding of gorilla population structure has implications for gorilla conservation, and for understanding the distribution of sympatric chimpanzees and Plio-Pleistocene hominins.

Relaxed functional constraints on triplicate α-globin gene in the bank vole suggest a different evolutionary history from other rodents

PubMed Central

Marková, S; Searle, J B; Kotlík, P

2014-01-01

Gene duplication plays an important role in the origin of evolutionary novelties, but the mechanisms responsible for the retention and functional divergence of the duplicated copy are not fully understood. The α-globin genes provide an example of a gene family with different numbers of gene duplicates among rodents. Whereas Rattus and Peromyscus each have three adult α-globin genes (HBA-T1, HBA-T2 and HBA-T3), Mus has only two copies. High rates of amino acid evolution in the independently derived HBA-T3 genes of Peromyscus and Rattus have been attributed to positive selection. Using RACE PCR, reverse transcription-PCR (RT–PCR) and RNA-seq, we show that another rodent, the bank vole Clethrionomys glareolus, possesses three transcriptionally active α-globin genes. The bank vole HBA-T3 gene is distinguished from each HBA-T1 and HBA-T2 by 20 amino acids and is transcribed 23- and 4-fold lower than HBA-T1 and HBA-T2, respectively. Polypeptides corresponding to all three genes are detected by electrophoresis, demonstrating that the translated products of HBA-T3 are present in adult erythrocytes. Patterns of codon substitution and the presence of low-frequency null alleles suggest a postduplication relaxation of purifying selection on bank vole HBA-T3. PMID:24595364

Riparian vegetation controls on braided stream dynamics

NASA Astrophysics Data System (ADS)

Gran, Karen; Paola, Chris

2001-12-01

Riparian vegetation can significantly influence the morphology of a river, affecting channel geometry and flow dynamics. To examine the effects of riparian vegetation on gravel bed braided streams, we conducted a series of physical experiments at the St. Anthony Falls Laboratory with varying densities of bar and bank vegetation. Water discharge, sediment discharge, and grain size were held constant between runs. For each run, we allowed a braided system to develop, then seeded the flume with alfalfa (Medicago sativa), allowed the seeds to grow, and then continued the run. We collected data on water depth, surface velocity, and bed elevation throughout each run using image-based techniques designed to collect data over a large spatial area with minimal disturbance to the flow. Our results show that the influence of vegetation on overall river patterns varied systematically with the spatial density of plant stems. Vegetation reduced the number of active channels and increased bank stability, leading to lower lateral migration rates, narrower and deeper channels, and increased channel relief. These effects increased with vegetation density. Vegetation influenced flow dynamics, increasing the variance of flow direction in vegetated runs and increasing scour depths through strong downwelling where the flow collided with relatively resistant banks. This oblique bank collision also provides a new mechanism for producing secondary flows. We found it to be more important than the classical curvature-driven mechanism in vegetated runs.

Two case studies in river naturalization: planform migration and bank erosion control

NASA Astrophysics Data System (ADS)

Abad, J. D.; Guneralp, I.; Rhoads, B. L.; Garcia, M. H.

2005-05-01

A sound understanding of river planform evolution and bank erosion control, along with integration of expertise from several disciplines is required for the development of predictive models for river naturalization. Over the last few years, several methodologies have been presented for naturalization projects, from purely heuristic to more advanced methods. Since the time and space scales of concern in naturalization vary widely, there is a need for appropriate tools at a variety of time and space scales. This study presents two case studies at different scales. The first case study describes the prediction of river planform evolution for a remeandering project based on a simplified two-dimensional hydrodynamic model. The second case study describes the applicability of a Computational Fluid Dynamics (CFD) model for evaluating the effectiveness of bank-erosion control structures in individual meander bends. Understanding the hydrodynamic influence of control structures on flow through bends allows accurate prediction of depositional and erosional distribution patterns, resulting in better assessment on river planform stability, especially for the case of natural complex systems. The first case study introduces a mathematical model for evolution of meandering rivers that can be used in remeandering projects. In United States in particular, several rivers have been channelized in the past causing environmental and ecological problems. Following Newton's third law, "for every action, there is a reaction", naturalization techniques evolve as natural reactive solutions to channelization. This model (herein referred as RVR Meander) can be used as a stand-alone Windows application or as module in a Geographic Information System. The model was applied to the Poplar Creek re-meanderization project and used to evaluate re-meandering alternatives for an approximately 800-meter long reach of Poplar Creek that was straightened in 1938. The second case study describes a streambank protection project using bendway weirs. In the State of Illinois, bendway weirs constructed of rock have been installed at hundreds of sites, especially on small streams, to control streambank erosion. Bendway weirs are low hard structures installed in the concave bank of a meander bend. Design criteria for these weirs are approximate and have not been rigorously evaluated for overall effectiveness at low-, medium- and high flows. This initial step of the study attempted to describe the hydrodynamics around the weirs and the influence of the hydrodynamic patterns on sediment transport (near-field and far-field). To do that, a state-of-the-art three-dimensional CFD model was used to simulate flow through meander bends where 3D velocity measurements have been obtained to validate model predictions at low stages. Results indicate that the weirs produce highly complex patterns of flow around the weirs, which in some cases may actually increase erosional potential near the outer bank. These two case studies represent components of an emerging initiative to develop predictive tools for naturalization over a range of spatial and temporal scales

Variation and Mathematics Pedagogy

ERIC Educational Resources Information Center

Leung, Allen

2012-01-01

This discussion paper put forwards variation as a theme to structure mathematical experience and mathematics pedagogy. Patterns of variation from Marton's Theory of Variation are understood and developed as types of variation interaction that enhance mathematical understanding. An idea of a discernment unit comprising mutually supporting variation…

Fatigue level estimation of monetary bills based on frequency band acoustic signals with feature selection by supervised SOM

NASA Astrophysics Data System (ADS)

Teranishi, Masaru; Omatu, Sigeru; Kosaka, Toshihisa

Fatigued monetary bills adversely affect the daily operation of automated teller machines (ATMs). In order to make the classification of fatigued bills more efficient, the development of an automatic fatigued monetary bill classification method is desirable. We propose a new method by which to estimate the fatigue level of monetary bills from the feature-selected frequency band acoustic energy pattern of banking machines. By using a supervised self-organizing map (SOM), we effectively estimate the fatigue level using only the feature-selected frequency band acoustic energy pattern. Furthermore, the feature-selected frequency band acoustic energy pattern improves the estimation accuracy of the fatigue level of monetary bills by adding frequency domain information to the acoustic energy pattern. The experimental results with real monetary bill samples reveal the effectiveness of the proposed method.

Time-series analysis of foreign exchange rates using time-dependent pattern entropy

NASA Astrophysics Data System (ADS)

Ishizaki, Ryuji; Inoue, Masayoshi

2013-08-01

Time-dependent pattern entropy is a method that reduces variations to binary symbolic dynamics and considers the pattern of symbols in a sliding temporal window. We use this method to analyze the instability of daily variations in foreign exchange rates, in particular, the dollar-yen rate. The time-dependent pattern entropy of the dollar-yen rate was found to be high in the following periods: before and after the turning points of the yen from strong to weak or from weak to strong, and the period after the Lehman shock.

Construction of quality of life change patterns: example in oncology in a phase III therapeutic trial (FFCD 0307).

PubMed

Nuemi, Gillles; Devilliers, Hervé; Le Malicot, Karine; Guimbaud, Rosine; Lepage, Côme; Quantin, Catherine

2015-09-22

Quality of life data in cancerology are often difficult to summarize due to missing data and difficulty to analyze the pattern of evolution in different groups of patients. The aim of this work was to apply a new methodology to construct Quality of Life (QoL) change patterns within patients included in a clinical trial comparing to regimen of treatment in locally advanced eosogastric cancer. In this trial, QoL was assessed every 2 months by self-reported EORTC QLQ-C30 questionnaire. Physical dimension scores were analyzed. After multiple imputation of missing data, 27 statistical measures aiming to describe the variation of QoL measures among follow-up were computed for each patient. Based on these measures, patient were grouped into homogenous groups in terms of QoL variation pattern using a K-Means classification method. The mean QoL score at each time was graphically represented in each obtained pattern. Finally, clinical characteristic of patients in each pattern of QoL were described and compared. The trial included 416 patients and 1023 questionnaire were collected. 74% of patients were male with a mean ± SD age of 62 ± 11 years. 43% of scores were missing. Patients were grouped into four classes of homogeneous QoL variation patterns. 1) a Pattern of 24 (6%) patients showing improvement in QoL with a mean variation of +10.7 points on the 0-100 scale, 2) a Pattern of 171 (41 %) patients showing a stability 3) two Patterns of 78 (19%) and 143 (34%) patients respectively showing a deterioration of QoL with a mean variation of -67.2 and -67.6, respectively. There were no difference between patterns in terms of gender or age. Patients within "degradation" pattern had significantly lower performance status (p = 0.015), higher severe after-effects rate (p < 10-3) and death rate (p < 10-3). This work opens up perspectives for longitudinal data analysis with a high probability of missing values while providing a relevant graphical summary. Patterns of QoL evolution with clinical relevance may help to interpret longitudinal QoL data in Cancer studies.

Unique inhibitory cascade pattern of molars in canids contributing to their potential to evolutionary plasticity of diet

PubMed Central

Asahara, Masakazu

2013-01-01

Developmental origins that guide the evolution of dental morphology and dental formulae are fundamental subjects in mammalian evolution. In a previous study, a developmental model termed the inhibitory cascade model was established. This model could explain variations in relative molar sizes and loss of the lower third molars, which sometimes reflect diet, in murine rodents and other mammals. Here, I investigated the pattern of relative molar sizes (inhibitory cascade pattern) in canids, a taxon exhibiting a wide range of dietary habits. I found that interspecific variation in canid molars suggests a unique inhibitory cascade pattern that differs from that in murine rodents and other previously reported mammals, and that this variation reflects dietary habits. This unique variability in molars was also observed in individual variation in canid species. According to these observations, canid species have greater variability in the relative sizes of first molars (carnassials), which are functionally important for dietary adaptation in the Carnivora. In conclusion, an inhibitory cascade that differs from that in murine rodents and other mammals may have contributed to diverse dietary patterns and to their parallel evolution in canids. PMID:23467478

Spatial and temporal drivers of phenotypic diversity in polymorphic snakes.

PubMed

Cox, Christian L; Davis Rabosky, Alison R

2013-08-01

Color polymorphism in natural populations presents an ideal opportunity to study the evolutionary drivers of phenotypic diversity. Systems with striking spatial, temporal, and qualitative variation in color can be leveraged to study the mechanisms promoting the distribution of different types of variation in nature. We used the highly polymorphic ground snake (Sonora semiannulata), a putative coral snake mimic with both cryptic and conspicuous morphs, to compare patterns of neutral genetic variation and variation over space and time in color polymorphism to investigate the mechanistic drivers of phenotypic variation across scales. We found that strong selection promotes color polymorphism across spatial and temporal scales, with morph frequencies differing markedly between juvenile and adult age classes within a single population, oscillating over time within multiple populations, and varying drastically over the landscape despite minimal population genetic structure. However, we found no evidence that conspicuousness of morphs was related to which color pattern was favored by selection or to any geographic factors, including sympatry with coral snakes. We suggest that complex patterns of phenotypic variation in polymorphic systems may be a fundamental outcome of the conspicuousness of morphs and that explicit tests of temporal and geographic variation are critical to the interpretation of conspicuousness and mimicry.

Delineating modern variation from extinct morphology in the fossil record using shells of the Eastern Box Turtle (Terrapene carolina)

PubMed Central

2018-01-01

Characterization of morphological variation in the shells of extant Eastern Box Turtles, Terrapene carolina, provides a baseline for comparison to fossil populations. It also provides an example of the difficulties inherent to recognizing intraspecific diversity in the fossil record. The degree to which variation in fossils of T. carolina can be accommodated by extant variation in the species has been disagreed upon for over eighty years. Using morphometric analyses of the carapace, I address the relationship between modern and fossil T. carolina in terms of sexual dimorphism, geographic and subspecific variation, and allometric variation. Modern T. carolina display weak male-biased sexual size dimorphism. Sexual shape dimorphism cannot be reliably detected in the fossil record. Rather than a four-part subspecific division, patterns of geographic variation are more consistent with clinal variation between various regions in the species distribution. Allometric patterns are qualitatively similar to those documented in other emydid turtles and explain a significant amount of shape variation. When allometric patterns are accounted for, Holocene specimens are not significantly different from modern specimens. In contrast, several geologically older specimens have significantly different carapace shape with no modern analogue. Those large, fossilized specimens represent extinct variation occupying novel portions of morphospace. This study highlights the need for additional documentation of modern osteological variation that can be used to test hypotheses of intraspecific evolution in the fossil record. PMID:29513709

Interpretation of biological and mechanical variations between the Lowry versus Bradford method for protein quantification.

PubMed

Lu, Tzong-Shi; Yiao, Szu-Yu; Lim, Kenneth; Jensen, Roderick V; Hsiao, Li-Li

2010-07-01

The identification of differences in protein expression resulting from methodical variations is an essential component to the interpretation of true, biologically significant results. We used the Lowry and Bradford methods- two most commonly used methods for protein quantification, to assess whether differential protein expressions are a result of true biological or methodical variations. MATERIAL #ENTITYSTARTX00026; Differential protein expression patterns was assessed by western blot following protein quantification by the Lowry and Bradford methods. We have observed significant variations in protein concentrations following assessment with the Lowry versus Bradford methods, using identical samples. Greater variations in protein concentration readings were observed over time and in samples with higher concentrations, with the Bradford method. Identical samples quantified using both methods yielded significantly different expression patterns on Western blot. We show for the first time that methodical variations observed in these protein assay techniques, can potentially translate into differential protein expression patterns, that can be falsely taken to be biologically significant. Our study therefore highlights the pivotal need to carefully consider methodical approaches to protein quantification in techniques that report quantitative differences.

A new species of Fizesereneia Takeda & Tamura, 1980 (Crustacea: Brachyura: Cryptochiridae) from the Red Sea and Oman.

PubMed

Van Der Meij, Sancia E T; Berumen, Michael L; Paulay, Gustav

2015-03-16

A new species of cryptochirid crab, Fizesereneia panda van der Meij, is described and illustrated based on specimens collected from the scleractinian corals Lobophyllia cf. hemprichii and L. cf. corymbosa from the Farasan Banks, Farasan Islands, and the reefs off Thuwal in the Saudi Arabian Red Sea, and from Symphyllia recta from reefs in the Gulf of Oman. This is the second cryptochirid species with the Red Sea as type locality. It can be separated from its congeners by the subrectangular carapace, raised midline and the complete division of the carapace depressions, and reddish black colour pattern of these concavities in live specimens. This new species is the seventh assigned to Fizesereneia. A DNA barcode for the new species has been deposited in GenBank.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boudell-Flanary, J.A.; Link, S.O.

Seeds recovered from soils in the semi-arid shrub-steppe were compared to test for differences between the seed banks found beneath and cryptogamic crust and the crevices in the crust. Seed quantity found within the crevices was 56% higher than that under the cryptogamic crust. Pseudoroegneria spicata, Poa sandbergii, Bromus tectorum, and Artemisia tridentata are the common species found at the research site. Seeds of Bromus tectorum, Erigeron spp., and Poa spp. were found in the crevices of the crust. Seeds of Artemisia tridentata were not found in the seed banks of either the cryptogamic crust or the crevices in themore » crust. The higher amount of seeds found in the crevices of the cryptogamic crust suggests that the crevices play a significant role in determining the distributional pattern of shrub-steppe vegetation.« less

Re-thinking skilled international labour migration: world cities and banking organisations.

PubMed

Beaverstock, J V

1994-08-01

"Highly skilled professional and managerial labour migration has become an important facet of the contemporary world economy. The operations of transnational corporations have created more opportunities for skilled migrants to work abroad.... There is a growing interest amongst economic geographers to examine this form of migration through an appreciation of global economic restructuring, labour market change and world cities. Consequently, this paper introduces a new conceptual framework...[which] is based on the rationale that world cities, and the patterns of labour market demand that exist within them, are of paramount importance in influencing highly skilled professional and managerial labour migration within the world economy. The author uses an example of highly skilled labour migration within the transnational banking sector [in London] to illustrate this new conceptual framework." excerpt

Mate choice and body pattern variations in the Crown Butterfly fish Chaetodon paucifasciatus (Chaetodontidae)

PubMed Central

Levy, Keren; Lerner, Amit; Shashar, Nadav

2014-01-01

ABSTRACT Mate choice is an important ecological behavior in fish, and is often based on visual cues of body patterns. The Crown Butterfly fish Chaetodon paucifasciatus (Chaetodontidae) is a monogamist, territorial species; it swims in close proximity to its partner throughout most of its life. This species is characterized by a pattern of 6–8 vertical black stripes on a white background, on both sides of its body. Our aim was to define spatial features (variations) in body patterns by evaluating the level of dissimilarity between both sides of each individual fish, and the level of dissimilarity between patterns of different individuals. In addition, we tested whether the fish are attracted to or reject specific features of the body patterns. Features were defined and counted using photographs of body patterns. Attraction to or rejection of specific features were tested behaviorally using a dual-choice experiment of video animations of individuals swimming over a coral-reef background. We found that the patterns of each fish and sides of the body were no less dissimilar, compared intraspecificly to other fish, and that each side pattern was unique and distinguishable. Variations in the patterns occurred mostly in the last three posterior stripes. Individuals were mainly attracted to conspecifics with multiple crossing patterns (two or more consecutive crossings), and rejected patterns with holes. Our results suggest that in this species the unique body pattern of each fish is used for conspecific identification of mates and intruders. PMID:25432516

Establishing the environmental risk of metal contaminated river bank sediments

NASA Astrophysics Data System (ADS)

Lynch, Sarah; Batty, Lesley; Byrne, Patrick

2016-04-01

Climate change predictions indicate an increase in the frequency and duration of flood events along with longer dry antecedent conditions, which could alter patterns of trace metal release from contaminated river bank sediments. This study took a laboratory mesocosm approach. Chemical analysis of water and sediment samples allowed the patterns of Pb and Zn release and key mechanisms controlling Pb and Zn mobility to be determined. Trace metal contaminants Pb and Zn were released throughout flooded periods. The highest concentrations of dissolved Pb were observed at the end of the longest flood period and high concentrations of dissolved Zn were released at the start of a flood. These concentrations were found to exceed environmental quality standards. Key mechanisms controlling mobility were (i) evaporation, precipitation and dissolution of Zn sulphate salts, (ii) anglesite solubility control of dissolved Pb, (iii) oxidation of galena and sphalerite, (iv) reductive dissolution of Mn/Fe hydroxides and co-precipitation/adsorption with Zn. In light of climate change predictions these results indicate future scenarios may include larger or more frequent transient 'pulses' of dissolved Pb and Zn released to river systems. These short lived pollution episodes could act as a significant barrier to achieving the EU Water Framework Directive objectives.

Long-term dim light during nighttime changes activity patterns and space use in experimental small mammal populations.

PubMed

Hoffmann, Julia; Palme, Rupert; Eccard, Jana Anja

2018-07-01

Artificial light at night (ALAN) is spreading worldwide and thereby is increasingly interfering with natural dark-light cycles. Meanwhile, effects of very low intensities of light pollution on animals have rarely been investigated. We explored the effects of low intensity ALAN over seven months in eight experimental bank vole (Myodes glareolus) populations in large grassland enclosures over winter and early breeding season, using LED garden lamps. Initial populations consisted of eight individuals (32 animals per hectare) in enclosures with or without ALAN. We found that bank voles under ALAN experienced changes in daily activity patterns and space use behavior, measured by automated radiotelemetry. There were no differences in survival and body mass, measured with live trapping, and none in levels of fecal glucocorticoid metabolites. Voles in the ALAN treatment showed higher activity at night during half moon, and had larger day ranges during new moon. Thus, even low levels of light pollution as experienced in remote areas or by sky glow can lead to changes in animal behavior and could have consequences for species interactions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Abnormal Image Detection in Endoscopy Videos Using a Filter Bank and Local Binary Patterns

PubMed Central

Nawarathna, Ruwan; Oh, JungHwan; Muthukudage, Jayantha; Tavanapong, Wallapak; Wong, Johnny; de Groen, Piet C.; Tang, Shou Jiang

2014-01-01

Finding mucosal abnormalities (e.g., erythema, blood, ulcer, erosion, and polyp) is one of the most essential tasks during endoscopy video review. Since these abnormalities typically appear in a small number of frames (around 5% of the total frame number), automated detection of frames with an abnormality can save physician’s time significantly. In this paper, we propose a new multi-texture analysis method that effectively discerns images showing mucosal abnormalities from the ones without any abnormality since most abnormalities in endoscopy images have textures that are clearly distinguishable from normal textures using an advanced image texture analysis method. The method uses a “texton histogram” of an image block as features. The histogram captures the distribution of different “textons” representing various textures in an endoscopy image. The textons are representative response vectors of an application of a combination of Leung and Malik (LM) filter bank (i.e., a set of image filters) and a set of Local Binary Patterns on the image. Our experimental results indicate that the proposed method achieves 92% recall and 91.8% specificity on wireless capsule endoscopy (WCE) images and 91% recall and 90.8% specificity on colonoscopy images. PMID:25132723

Filter bank common spatial patterns in mental workload estimation.

PubMed

Arvaneh, Mahnaz; Umilta, Alberto; Robertson, Ian H

2015-01-01

EEG-based workload estimation technology provides a real time means of assessing mental workload. Such technology can effectively enhance the performance of the human-machine interaction and the learning process. When designing workload estimation algorithms, a crucial signal processing component is the feature extraction step. Despite several studies on this field, the spatial properties of the EEG signals were mostly neglected. Since EEG inherently has a poor spacial resolution, features extracted individually from each EEG channel may not be sufficiently efficient. This problem becomes more pronounced when we use low-cost but convenient EEG sensors with limited stability which is the case in practical scenarios. To address this issue, in this paper, we introduce a filter bank common spatial patterns algorithm combined with a feature selection method to extract spatio-spectral features discriminating different mental workload levels. To evaluate the proposed algorithm, we carry out a comparative analysis between two representative types of working memory tasks using data recorded from an Emotiv EPOC headset which is a mobile low-cost EEG recording device. The experimental results showed that the proposed spatial filtering algorithm outperformed the state-of-the algorithms in terms of the classification accuracy.

Seed dormancy and persistent sediment seed banks of ephemeral freshwater rock pools in the Australian monsoon tropics

PubMed Central

Cross, Adam T.; Turner, Shane R.; Renton, Michael; Baskin, Jerry M.; Dixon, Kingsley W.; Merritt, David J.

2015-01-01

Background and Aims Rock pools are small, geologically stable freshwater ecosystems that are both hydrologically and biologically isolated. They harbour high levels of plant endemism and experience environmental unpredictability driven by the presence of water over variable temporal scales. This study examined the hypothesis that the sediment seed bank in monsoon tropical freshwater rock pools would persist through one or more periods of desiccation, with seed dormancy regulating germination timing in response to rock pool inundation and drying events. Methods Seeds were collected from seven dominant rock pool species, and germination biology and seed dormancy were assessed under laboratory conditions in response to light, temperature and germination stimulators (gibberellic acid, karrikinolide and ethylene). Field surveys of seedling emergence from freshwater rock pools in the Kimberley region of Western Australia were undertaken, and sediment samples were collected from 41 vegetated rock pools. Seedling emergence and seed bank persistence in response to multiple wetting and drying cycles were determined. Key Results The sediment seed bank of individual rock pools was large (13 824 ± 307 to 218 320 ± 42 412 seeds m−2 for the five species investigated) and spatially variable. Seedling density for these same species in the field ranged from 13 696 to 87 232 seedlings m−2. Seeds of rock pool taxa were physiologically dormant, with germination promoted by after-ripening and exposure to ethylene or karrikinolide. Patterns of seedling emergence varied between species and were finely tuned to seasonal temperature and moisture conditions, with the proportions of emergent seedlings differing between species through multiple inundation events. A viable seed bank persisted after ten consecutive laboratory inundation events, and seeds retained viability in dry sediments for at least 3 years. Conclusions The persistent seed bank in freshwater rock pools is likely to provide resilience to plant communities against environmental stochasticity. Since rock pool communities are often comprised of highly specialized endemic and range-restricted species, sediment seed banks may represent significant drivers of species persistence and diversification in these ecosystems. PMID:25660345

Internal solitary waves on the Saya de Malha bank of the Mascarene Plateau: SAR observations and interpretation

NASA Astrophysics Data System (ADS)

New, A. L.; Magalhaes, J. M.; da Silva, J. C. B.

2013-09-01

Energetic Internal Solitary Waves (ISWs) were recently discovered radiating from the central region of the Mascarene Plateau in the south-western Indian Ocean (da Silva et al., 2011). SAR imagery revealed the two-dimensional structure of the waves which propagated for several hundred kilometres in deep water both to the east and west of a sill, located near 12.5°S, 61°E between the Saya de Malha and Nazareth banks. These waves were presumed to originate from the disintegration of a large lee wave formed on the western side of the sill at the time of maximum barotropic flow to the west. In the present paper we focus instead on ISWs propagating in the shallow water above the Saya da Malha (SM) bank (to the north of the sill), rather than on those propagating in deep water (here denominated as type-I or -II waves if propagating to the west or east respectively). Analysis of an extended SAR image dataset reveals strong sea surface signatures of complex patterns of ISWs propagating over the SM bank arising from different sources. We identify three distinct types of waves, and propose suitable generation mechanisms for them using synergy from different remotely sensed datasets, together with analyses of linear phase speeds (resulting from local stratification and bathymetry). In particular, we find a family of ISWs (termed here A-type waves) which results from the disintegration of a lee wave which forms on the western slopes of SM. We also identify two further wave trains (B- and C-type waves) which we suggest result from refraction of the deep water type-I and -II waves onto the SM bank. Therefore, both B- and C-type waves can be considered to result from the same generation source as the type-I and -II waves. Finally, we consider the implications of the ISWs for mixing and biological production over the SM bank, and provide direct evidence, from ocean colour satellite images, of enhanced surface chlorophyll over a shallow topographic feature on the bank, which is consistent with the breaking of the ISWs.

Acquiring Constraints on Morphosyntactic Variation: Children's Spanish Subject Pronoun Expression

ERIC Educational Resources Information Center

Shin, Naomi Lapidus

2016-01-01

Constraints on linguistic variation are consistent across adult speakers, yielding probabilistic and systematic patterns. Yet, little is known about the development of such patterns during childhood. This study investigates Spanish subject pronoun expression in naturalistic data from 154 monolingual children in Mexico, divided into four age…

Variation in salmonid life histories: patterns and perspectives.

Treesearch

Mary F. Willson

1997-01-01

Salmonid fishes differ in degree of anadromy, age of maturation, frequency of reproduction, body size and fecundity, sexual dimorphism, breeding season, morphology, and, to a lesser degree, parental care. Patterns of variation and their possible significance for ecology and evolution and for resource management are the focus of this review.

Patterns of Diel Variation in Nitrate Concentrations in the Potomac River

NASA Astrophysics Data System (ADS)

Burns, D. A.; Miller, M. P.; Pellerin, B. A.; Capel, P. D.

2015-12-01

The Potomac River is the second largest source of nitrogen to Chesapeake Bay, where reducing nutrient loads has been a focus of efforts to improve estuarine trophic status. Two years of high frequency sensor measurements of nitrate (NO3-) concentrations in the Upper Potomac River at the Little Falls gage were analyzed to quantify seasonal variation in the magnitude and timing of the apparent loss of NO3- from the water column that results from diel-driven processes. In addition to broad seasonal and flow-driven variation in NO3- concentrations, clear diel patterns were evident in the river, especially during low flow conditions that follow stormflow by several days. Diel variation was about 0.01 mg N/L in winter and 0.02 to 0.03 mg N/L in summer with intermediate values during spring and fall. This variation was equivalent to <1% of the mean daily NO3- concentration in winter and about 4% in summer; however, variation >10% occurred during some summer days. Maximum diel concentrations occurred during mid- to late-morning in most seasons, with the most repeatable patterns in summer and wider variation in timing during fall and winter. Diel NO3- loss diminished loads by about 0.6% in winter and 1.3% in summer, and diel-driven processes were minor compared to estimates of total in-stream NO3- loss that averaged about one-third of the inferred groundwater NO3- contribution to the river network. The magnitude of diel NO3- variation was more strongly related to metrics based on water temperature and discharge than to metrics based on photosynthetically active radiation. Despite the fairly low diminishment of NO3- loads attributable to diel variation, estimates of diel NO3- uptake were fairly high compared to published values from smaller streams and rivers. The diel NO3- patterns observed in the Potomac River are consistent with photosynthesis of periphyton as a principal driver which may be linked to denitrification through the release of labile carbon. The extent to which these diel patterns are related to measures of aquatic metabolism are unknown as is the role of dispersion in obscuring diel patterns. Improvements to these diel estimates will require additional measures such as dissolved oxygen and ammonium, and the use of a second upstream measurement station to better constrain NO3- uptake values.

A Fully-Automatic Method to Segment the Carotid Artery Layers in Ultrasound Imaging: Application to Quantify the Compression-Decompression Pattern of the Intima-Media Complex During the Cardiac Cycle.

PubMed

Zahnd, Guillaume; Kapellas, Kostas; van Hattem, Martijn; van Dijk, Anouk; Sérusclat, André; Moulin, Philippe; van der Lugt, Aad; Skilton, Michael; Orkisz, Maciej

2017-01-01

The aim of this study was to introduce and evaluate a contour segmentation method to extract the interfaces of the intima-media complex in carotid B-mode ultrasound images. The method was applied to assess the temporal variation of intima-media thickness during the cardiac cycle. The main methodological contribution of the proposed approach is the introduction of an augmented dimension to process 2-D images in a 3-D space. The third dimension, which is added to the two spatial dimensions of the image, corresponds to the tentative local thickness of the intima-media complex. The method is based on a dynamic programming scheme that runs in a 3-D space generated with a shape-adapted filter bank. The optimal solution corresponds to a single medial axis representation that fully describes the two anatomical interfaces of the arterial wall. The method is fully automatic and does not require any input from the user. The method was trained on 60 subjects and validated on 184 other subjects from six different cohorts and four different medical centers. The arterial wall was successfully segmented in all analyzed images (average pixel size = 57 ± 20 mm), with average segmentation errors of 47 ± 70 mm for the lumen-intima interface, 55 ± 68 mm for the media-adventitia interface and 66 ± 90 mm for the intima-media thickness. The amplitude of the temporal variations in IMT during the cardiac cycle was significantly higher in the diseased population than in healthy volunteers (106 ± 48 vs. 86 ± 34 mm, p = 0.001). The introduced framework is a promising approach to investigate an emerging functional parameter of the arterial wall by assessing the cyclic compression-decompression pattern of the tissues. Copyright © 2016 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Cenozoic tectonic subsidence in the Southern Continental Margin, South China Sea

NASA Astrophysics Data System (ADS)

Fang, Penggao; Ding, Weiwei; Fang, Yinxia; Zhao, Zhongxian; Feng, Zhibing

2017-06-01

We analyzed two recently acquired multichannel seismic profiles across the Dangerous Grounds and the Reed Bank area in the South China Sea. Reconstruction of the tectonic subsidence shows that the southern continental margin can be divided into three stages with variable subsidence rate. A delay of tectonic subsidence existed in both areas after a break-up, which was likely related to the major mantle convection during seafloor spreading, that was triggered by the secondary mantle convection below the continental margin, in addition to the variation in lithospheric thickness. Meanwhile, the stage with delayed subsidence rate differed along strikes. In the Reed Bank area, this stage is between 32-23.8 Ma, while in the Dangerous Grounds, it was much later (between 19-15.5 Ma). We believe the propagated rifting in the South China Sea dominated the changes of this delayed subsidence rate stage.

Three-Dimensional Numerical Modelling of Flow and Sediment Transport for Field Scale Application of Stream Barbs at Sawmill Creek, Ottawa

NASA Astrophysics Data System (ADS)

Jamieson, E. C.; Rennie, C. D.; Townsend, R. D.

2009-05-01

Stream barbs (a type of submerged groyne or spur dike) are low-profile linear rock structures that prevent the erosion of stream banks by redirecting high velocity flow away from the bank. Stream barbs are becoming a popular method for stream bank protection as they can be built at a relatively low cost and provide added ecological benefit. The design and construction of stream barbs in Sawmill Creek, a small urban stream in the city of Ottawa, Canada, will serve as a demonstration project for the use of barbs as a bank stabilization technique that will contribute to the rehabilitation of urban creeks while reducing erosion threats to property and infrastructure. As well as providing bank protection, these structures promote vegetated stream banks, create resting pools and scour holes for fish habitat, and increase bio-diversity for aquatic species. Despite these benefits, stream barbs are not a common means of stream bank protection in Canada, due largely to a lack of suitable design guidelines. The overall goal of stream habitat restoration in incising channel systems should be to accelerate natural processes of channel equilibrium recovery, riparian re-vegetation, and stream-floodplain interaction. Incorporating stream barbs, instead of traditional bank protection measures, attempts to achieve these goals. A three-dimensional numerical model: 'Simulation in Intakes with Multiblock option' (SSIIM), was used to model the effects of placing a series of stream barbs along an unstable section of Sawmill Creek. The average bankfull depth, width, and discharge of the creek are 1.2 m, 7.5 m, and 9 m3/s respectively. The model was used to assess various design alternatives for a series of seven stream barbs at two consecutive channel bends requiring stabilization measures along their outer banks. Design criteria were principally based on the reduction of velocity, shear stress and subsequent erosion at the outside bank of each bend, and on the relocation of a new thalweg towards the centre of the channel, away from the outside bank. Sawmill Creek has the added complexity of having predominately clay bed and banks. The erosional behaviour of cohesive sediments such as clay is difficult to model correctly, due to the complex site-specific physio- chemical properties of clay particles. Following the construction of the proposed barbs at our field test site this summer (2009), and data collection the following spring and summer, we hope to advance the current knowledge of cohesive sediment transport processes in a complicated three-dimensional turbulent flow field. For the present modelling effort, erodibility of the consolidated clay bed and bank material was estimated based on establishing an entrainment threshold at near-bankfull conditions. The focus of this research is on (i) the unique site conditions and environmental protection requirements, (ii) design methodology, and (iii) results of the numerical simulation. The three-dimensional numerical model was capable of reproducing the expected distribution of secondary flow in a channel bend, the unique three- dimensional flow field resulting from a series of submerged structures and the associated patterns of soil erosion and deposition. The numerical modelling also demonstrated to be a useful tool for optimizing barb design for stream bank protection at the proposed field test site. Modelling results confirmed that in the vicinity of the barbs, the addition of the proposed barb layout achieved substantial reduction in erosion (up to 98 %), bed shear stress (up to 59 %) and streamwise velocity (up to 51 %).

The Contemporary Land Mammals of Egypt (Including Sinai).

DTIC Science & Technology

1980-08-15

libyca and adult male and female Ictonyx striatus erythreae .............. 400 49. Variation in median lumbar stripe in samples of Poecilictis libyca...vampI)(stris ptitrizii: wadis of ’{ebel Uw ~einat and probably (;ilf el Kebir;, lMpodillus cam ;wstris uenjistus: \\Aest bank of Nile in Upper Egypt. I...white base in lumbar and sacral region. Width of tip, subter- minal, and basal color bands variable. Ear pigmented, covered with whitish hairs. Tail

Institutional Capacity for Natural Disasters: Methodology for Case Studies in Africa

DTIC Science & Technology

2013-03-01

Politician’s Dilemma (Berkeley: University of California Press, 1994); Haggard, Stephan, “Reform of the State in Latin America ” in Shahid Javed...Burki, et al., eds., Development in Latin America and the Caribbean (Washington: World Bank, 1997). 30 Cohen and Werker 2008: 797. 31 Keefer 2009: 21...capacity for natural disasters examines the causes of variation in government policies to reduce the risk of, prepare for, and respond to natural

Modelling reveals endogenous osmotic adaptation of storage tissue water potential as an important driver determining different stem diameter variation patterns in the mangrove species Avicennia marina and Rhizophora stylosa.

PubMed

Vandegehuchte, Maurits W; Guyot, Adrien; Hubeau, Michiel; De Swaef, Tom; Lockington, David A; Steppe, Kathy

2014-09-01

Stem diameter variations are mainly determined by the radial water transport between xylem and storage tissues. This radial transport results from the water potential difference between these tissues, which is influenced by both hydraulic and carbon related processes. Measurements have shown that when subjected to the same environmental conditions, the co-occurring mangrove species Avicennia marina and Rhizophora stylosa unexpectedly show a totally different pattern in daily stem diameter variation. Using in situ measurements of stem diameter variation, stem water potential and sap flow, a mechanistic flow and storage model based on the cohesion-tension theory was applied to assess the differences in osmotic storage water potential between Avicennia marina and Rhizophora stylosa. Both species, subjected to the same environmental conditions, showed a resembling daily pattern in simulated osmotic storage water potential. However, the osmotic storage water potential of R. stylosa started to decrease slightly after that of A. marina in the morning and increased again slightly later in the evening. This small shift in osmotic storage water potential likely underlaid the marked differences in daily stem diameter variation pattern between the two species. The results show that in addition to environmental dynamics, endogenous changes in the osmotic storage water potential must be taken into account in order to accurately predict stem diameter variations, and hence growth.

PAPER: The Precision Array to Probe the Epoch of Reionization

NASA Astrophysics Data System (ADS)

Backer, Donald C.; PAPER Team

2009-01-01

PAPER is being developed for an experiment series whose long term goal is detection of the power spectrum of faint, redshifted-21cm signals from hydrogen heated by the first stars during the epoch of reionization. Our instrumentation goals include: of dipole elements that are optimized for operation from 100-200 MHz with a clean beam response; amplifiers and receivers with good impedance match and smooth gain response over a wide bandpass; FPGA-based correlator (Parsons et al. 2008) capable of producing full stokes products for the non-tracking array; and a calibration and imaging package (AIPY) tailored to the unique problem of ultrawide field imaging. PAPER is being built and tested in stages at the NRAO Green Bank, WV site with deployment of the full instrument in Western Australia. Results from a 16-station deployment in September 2008 in Green Bank (PGB-16) are presented including: phase and amplitude calibration; RFI mitigation; full northern sky maps; and wide-field snapshot imaging. Our previous PGB-8 (8 dipole) results already reach down below 100 mJy per synthesized beam (4 K) in cold parts of the sky. We are developing new techniques to improve system stability: ambient temperature to track active balun gain variations and ORBCOM satellite monitoring to assess beam pattern and ionospheric phase gradients. In 2009 we will deploy a 64-antenna PAPER at the Murchison Radio Observatory in the outback of Western Australia (PWA-64). Our initial PWA-4 experiment in 2007 July with 4 dipoles showed the dramatic improvement in data quality owing to the ultra radio quiet site. A multi-month integration will be done during 2009 Sep-Dec when the coldest synchrotron sky is overhead at night, when the sun is down and the ionospheric column density is minimal. The depth of this integration toward our detection goal will be highly dependent on calibration and imaging algorithm development.

Sources of polycyclic aromatic hydrocarbons in sediments of the Bharalu River, a tributary of the River Brahmaputra in Guwahati, India.

PubMed

Hussain, Karishma; Balachandran, S; Rafiqul Hoque, Raza

2015-12-01

Analysis of riverine sediments offers important information regarding anthropogenic activities in the adjacent watershed. In this study, we provide polycyclic aromatic hydrocarbon (PAH) levels, their possible sources and potential hazards in the Bharalu tributary of the Brahmaputra River flowing through Guwahati city in India. The USEPA's 16 priority PAHs were determined in river bank sediments during two distinct seasons viz. pre- and post-monsoon. The ∑PAHs concentrations varied between 338 and 23,100 ng g(-1) during post-monsoon and between 609 and 8620 ng g(-1) during pre-monsoon. Mean benzo(a)pyrene (BaP) levels were between 17.8 ± 12 and 21.9 ± 27 ng g(-1) during post- and pre-monsoon seasons respectively. Spatial variations were observed. Interestingly, bank sediment samples from the sites near the confluence of the Bharalu River with the Brahmaputra River were found to have maximum concentrations of PAHs during post-monsoon season. The profile of the PAHs was dominated by 3-, 4- and 6-ring compounds. We estimated hazards of PAHs as RQ∑PAHs, which showed seasonal variation: 3 times higher during post-monsoon than pre-monsoon. 3-and 4-ring PAHs were the major PAHs of concern. The Bharalu River sediment was found to pose medium to high hazards to ecosystem. The individual PAHs including Acy, Phen and Pyr were observed with RQ(MPCs) value >1 indicating severe hazards during post-monsoon and pre-monsoon season. A very high percentage of coefficient of variation (CV) for PAHs during post-monsoon also revealed great variation in hazards and sources in this season. The diagnostic ratios indicated both petrogenic and pyrogenic origin of the PAHs. The pyrogenic contributions were mainly attributed to emissions from diesel, gasoline and wood combustion which are mainly from anthropogenic sources. Copyright © 2015 Elsevier Inc. All rights reserved.

Robust dynamic inversion controller design and analysis (using the X-38 vehicle as a case study)

NASA Astrophysics Data System (ADS)

Ito, Daigoro

A new way to approach robust Dynamic Inversion controller synthesis is addressed in this paper. A Linear Quadratic Gaussian outer-loop controller improves the robustness of a Dynamic Inversion inner-loop controller in the presence of uncertainties. Desired dynamics are given by the dynamic compensator, which shapes the loop. The selected dynamics are based on both performance and stability robustness requirements. These requirements are straightforwardly formulated as frequency-dependent singular value bounds during synthesis of the controller. Performance and robustness of the designed controller is tested using a worst case time domain quadratic index, which is a simple but effective way to measure robustness due to parameter variation. Using this approach, a lateral-directional controller for the X-38 vehicle is designed and its robustness to parameter variations and disturbances is analyzed. It is found that if full state measurements are available, the performance of the designed lateral-directional control system, measured by the chosen cost function, improves by approximately a factor of four. Also, it is found that the designed system is stable up to a parametric variation of 1.65 standard deviation with the set of uncertainty considered. The system robustness is determined to be highly sensitive to the dihedral derivative and the roll damping coefficients. The controller analysis is extended to the nonlinear system where both control input displacements and rates are bounded. In this case, the considered nonlinear system is stable up to 48.1° in bank angle and 1.59° in sideslip angle variations, indicating it is more sensitive to variations in sideslip angle than in bank angle. This nonlinear approach is further extended for the actuator failure mode analysis. The results suggest that the designed system maintains a high level of stability in the event of aileron failure. However, only 35% or less of the original stability range is maintained for the rudder failure case. Overall, this combination of controller synthesis and robustness criteria compares well with the mu-synthesis technique. It also is readily accessible to the practicing engineer, in terms of understanding and use.

Monte Carlo simulation of edge placement error

NASA Astrophysics Data System (ADS)

Kobayashi, Shinji; Okada, Soichiro; Shimura, Satoru; Nafus, Kathleen; Fonseca, Carlos; Estrella, Joel; Enomoto, Masashi

2018-03-01

In the discussion of edge placement error (EPE), we proposed interactive pattern fidelity error (IPFE) as an indicator to judge pass/fail of integrated patterns. IPFE consists of lower and upper layer EPEs (CD and center of gravity: COG) and overlay, which is decided from the combination of each maximum variation. We succeeded in obtaining the IPFE density function by Monte Carlo simulation. In the results, we also found that the standard deviation (σ) of each indicator should be controlled by 4.0σ, at the semiconductor grade, such as 100 billion patterns per die. Moreover, CD, COG and overlay were analyzed by analysis of variance (ANOVA); we can discuss all variations from wafer to wafer (WTW), pattern to pattern (PTP), line edge roughness (LWR) and stochastic pattern noise (SPN) on an equal footing. From the analysis results, we can determine that these variations belong to which process and tools. Furthermore, measurement length of LWR is also discussed in ANOVA. We propose that the measurement length for IPFE analysis should not be decided to the micro meter order, such as >2 μm length, but for which device is actually desired.

Unusual pattern of the first dorsal metacarpal artery.

PubMed

Bianchi, Homero; Saravia, Diego; Ottone, Nicolas Ernesto

2017-07-01

This report describes an unusual pattern of the first dorsal metacarpal artery (FDMA) regarding its course and termination. This FDMA had an abnormal course, passing deep to various anatomical elements related to the index finger, with unusual termination in the radial and ulnar proper palmar digital arteries feeding the second and third fingers, respectively. There is no mention of this anatomical variation in the literature. We report the possible embryological origin of this case and other variations related to the FDMA. This unusual pattern represents a new reason to consider anatomical knowledge important for surgeons whose procedures are in this area and to ensure an accurate diagnosis and safe treatment of pathologies that might engage this anatomical variation.

Shifting stream planform state decreases stream productivity yet increases riparian animal production.

PubMed

Venarsky, Michael P; Walters, David M; Hall, Robert O; Livers, Bridget; Wohl, Ellen

2018-05-01

In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging < 200 years ago) are single-channeled with mostly erosional habitat. We tested how these opposing stream states influenced organic matter, benthic macroinvertebrate secondary production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m -2 ), but values were 2 ×-21 × higher in undisturbed reaches per unit of stream valley (m -1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream-riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

Shifting stream planform state decreases stream productivity yet increases riparian animal production

USGS Publications Warehouse

Venarsky, Michael P.; Walters, David M.; Hall, Robert O.; Livers, Bridget; Wohl, Ellen

2018-01-01

In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging < 200 years ago) are single-channeled with mostly erosional habitat. We tested how these opposing stream states influenced organic matter, benthic macroinvertebrate secondary production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m−2), but values were 2 ×–21 × higher in undisturbed reaches per unit of stream valley (m−1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream–riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

Combining Field and Laboratory Experiments in Order to Understand Interactions Between Flow, Sediment, Vegetation And Bank Erosion in Riparian Rehabilitation Works

NASA Astrophysics Data System (ADS)

Rodriguez, J. F.; Gorrick, S.; Kalma, J.; Cook, N.; Outhet, D.; Raine, A.

2005-12-01

Riparian lands are important for maintaining viable ecosystems, improving water quality and reducing sediment yields. Yet, riparian lands are frequently neglected, degraded and poorly managed. In many Australian riverine zones clearing or grazing of native riparian vegetation has resulted in varying degrees of erosion, sedimentation and degradation of aquatic ecosystems. Reintroducing riparian vegetation is one of the preferred methods for improving bank stability, reducing bank erosion to natural rates and rehabilitating channels. The present research aims to explore how reintroduced riparian vegetation modifies the flow and sediment transport patterns and at the same time how the vegetation is affected by flow and sediment. Both field experimentation and laboratory studies will lead to basic understanding of the processes involved and will help the efficient design of plantings for riparian rehabilitation. In order to be able to reproduce the most important processes in a laboratory physical model, a field site with a relatively simple geometry has been selected for the study. The site is on a small sand bed stream in the Hunter Valley in NSW. The reach has a large radius bend with no riparian vegetation on the outer bank, where erosion occurs periodically. Reintroduction of vegetation is planned for October 2005, with pre and post monitoring stages running from March 2005 to August 2008. Laboratory physical modelling based on field characteristics and with varying flow discharges and plant arrangement will provide information to help develop, adapt and test quantitative models of flow dynamics, sediment transport and bank erosion incorporating the effects of vegetation. These results can then be used by river managers when they are developing rehabilitation strategies.

Epigenetic Inheritance across the Landscape.

PubMed

Whipple, Amy V; Holeski, Liza M

2016-01-01

The study of epigenomic variation at the landscape-level in plants may add important insight to studies of adaptive variation. A major goal of landscape genomic studies is to identify genomic regions contributing to adaptive variation across the landscape. Heritable variation in epigenetic marks, resulting in transgenerational plasticity, can influence fitness-related traits. Epigenetic marks are influenced by the genome, the environment, and their interaction, and can be inherited independently of the genome. Thus, epigenomic variation likely influences the heritability of many adaptive traits, but the extent of this influence remains largely unknown. Here, we summarize the relevance of epigenetic inheritance to ecological and evolutionary processes, and review the literature on landscape-level patterns of epigenetic variation. Landscape-level patterns of epigenomic variation in plants generally show greater levels of isolation by distance and isolation by environment then is found for the genome, but the causes of these patterns are not yet clear. Linkage between the environment and epigenomic variation has been clearly shown within a single generation, but demonstrating transgenerational inheritance requires more complex breeding and/or experimental designs. Transgenerational epigenetic variation may alter the interpretation of landscape genomic studies that rely upon phenotypic analyses, but should have less influence on landscape genomic approaches that rely upon outlier analyses or genome-environment associations. We suggest that multi-generation common garden experiments conducted across multiple environments will allow researchers to understand which parts of the epigenome are inherited, as well as to parse out the relative contribution of heritable epigenetic variation to the phenotype.

Epigenetic Inheritance across the Landscape

PubMed Central

Whipple, Amy V.; Holeski, Liza M.

2016-01-01

The study of epigenomic variation at the landscape-level in plants may add important insight to studies of adaptive variation. A major goal of landscape genomic studies is to identify genomic regions contributing to adaptive variation across the landscape. Heritable variation in epigenetic marks, resulting in transgenerational plasticity, can influence fitness-related traits. Epigenetic marks are influenced by the genome, the environment, and their interaction, and can be inherited independently of the genome. Thus, epigenomic variation likely influences the heritability of many adaptive traits, but the extent of this influence remains largely unknown. Here, we summarize the relevance of epigenetic inheritance to ecological and evolutionary processes, and review the literature on landscape-level patterns of epigenetic variation. Landscape-level patterns of epigenomic variation in plants generally show greater levels of isolation by distance and isolation by environment then is found for the genome, but the causes of these patterns are not yet clear. Linkage between the environment and epigenomic variation has been clearly shown within a single generation, but demonstrating transgenerational inheritance requires more complex breeding and/or experimental designs. Transgenerational epigenetic variation may alter the interpretation of landscape genomic studies that rely upon phenotypic analyses, but should have less influence on landscape genomic approaches that rely upon outlier analyses or genome–environment associations. We suggest that multi-generation common garden experiments conducted across multiple environments will allow researchers to understand which parts of the epigenome are inherited, as well as to parse out the relative contribution of heritable epigenetic variation to the phenotype. PMID:27826318

Species frequency dynamics in an old-field succession: Effects of disturbance, fertilization and scale

USGS Publications Warehouse

Gibson, D.J.; Middleton, B.A.; Foster, K.; Honu, Y.A.K.; Hoyer, E.W.; Mathis, M.

2005-01-01

Question: Can patterns of species frequency in an old-field be explained within the context of a metapopulation model? Are the patterns observed related to time, spatial scale, disturbance, and nutrient availability? Location: Upland and lowland old-fields in Illinois, USA. Method: Species richness was recorded annually for seven years following plowing of an upland and lowland old-field subject to crossed fertilizer and disturbance treatments (mowing and rototilling). Species occupancy distributions were assessed with respect to the numbers of core and satellite species. Results: In both fields, species richness became higher in disturbed plots than in undisturbed plots over time, and decreased in fertilized plots irrespective of time. A bimodal pattern of species richness consistent with the Core-satellite species (CSS) hypothesis occurred in the initial seed bank and through the course of early succession. The identity of native and exotic core species (those present in > 90% of blocks) changed with time. Some core species from the seed bank became core species in the vegetation, albeit after several years. At the scale of individual plots, a bimodal fit consistent with the CSS hypothesis applied only in year 1 and rarely thereafter. Conclusions: The CSS hypothesis provides a metapopulation perspective for understanding patterns of species richness but requires the assessment of spatial and temporal scaling effects. Regional processes (e.g. propagule availability) at the largest scale have the greatest impact influencing community structure during early secondary succession. Local processes (e.g., disturbance and soil nutrients) are more important at smaller scales and place constraints on species establishment and community structure of both native and exotic species. Under the highest intensity of disturbance, exotic species may be able to use resources unavailable to, or unused by, native species. ?? IAVS; Opulus Press.

Genomic determinants of epidermal appendage patterning and structure in domestic birds

PubMed Central

Boer, Elena F.; Van Hollebeke, Hannah F.; Shapiro, Michael D.

2017-01-01

Variation in regional identity, patterning, and structure of epidermal appendages contributes to skin diversity among many vertebrate groups, and is perhaps most striking in birds. In pioneering work on epidermal appendage patterning, John Saunders and his contemporaries took advantage of epidermal appendage diversity within and among domestic chicken breeds to establish the importance of mesoderm-ectoderm signaling in determining skin patterning. Diversity in chickens and other domestic birds, including pigeons, is driving a new wave of research to dissect the molecular genetic basis of epidermal appendage patterning. Domestic birds are not only outstanding models for embryonic manipulations, as Saunders recognized, but they are also ideal genetic models for discovering the specific genes that control normal development and the mutations that contribute to skin diversity. Here, we review recent genetic and genomic approaches to uncover the basis of epidermal macropatterning, micropatterning, and structural variation. We also present new results that confirm expression changes in two limb identity genes in feather-footed pigeons, a case of variation in appendage structure and identity. PMID:28347644

Seasonal and inter-annual dynamics of suspended sediment at the mouth of the Amazon river: The role of continental and oceanic forcing, and implications for coastal geomorphology and mud bank formation

NASA Astrophysics Data System (ADS)

Gensac, Erwan; Martinez, Jean-Michel; Vantrepotte, Vincent; Anthony, Edward J.

2016-04-01

Fine-grained sediments supplied to the Ocean by the Amazon River and their transport under the influence of continental and oceanic forcing drives the geomorphic change along the 1500 km-long coast northward to the Orinoco River delta. The aim of this study is to give an encompassing view of the sediment dynamics in the shallow coastal waters from the Amazon River mouth to the Capes region (northern part of the Amapa region of Brazil and eastern part of French Guiana), where large mud banks are formed. Mud banks are the overarching features in the dynamics of the Amazon-Orinoco coast. They start migrating northward in the Capes region. Suspended Particulate Matter (SPM) concentrations were calculated from satellite products (MODIS Aqua and Terra) acquired over the period 2000-2013. The Census-X11 decomposition method used to discriminate short-term, seasonal and long-term time components of the SPM variability has rendered possible a robust analysis of the impact of continental and oceanic forcing. Continental forcing agents considered are the Amazon River water discharge, SPM concentration and sediment discharge. Oceanic forcing comprises modelled data of wind speed and direction, wave height and direction, and currents. A 150 km-long area of accretion is detected at Cabo Norte that may be linked with a reported increase in the river's sediment discharge concurrent with the satellite data study period. We also assess the rate of mud bank migration north of Cabo Norte, and highlight its variability. Although we confirm a 2 km y-1 migration rate, in agreement with other authors, we show that this velocity may be up to 5 km y-1 along the Cabo Orange region, and we highlight the effect of water discharge by major rivers debouching on this coastal mud belt in modulating such rates. Finally, we propose a refined sediment transport pattern map of the region based on our results and of previous studies in the area such as the AMASSEDS programme, and discuss the relationship between sediment transport and accumulation patterns and the coastal geomorphology of this region.

Constraining formation of the Eggvin Bank (West of Jan Mayen, N. Atlantic) from OBS data

NASA Astrophysics Data System (ADS)

Tan, P.; Breivik, A. J.; Mjelde, R.; Azuma, R.

2015-12-01

The anomalously high magma flux in the Eggvin Bank area has triggered new research efforts to better understand the crustal development in this area. The Eggvin Bank is located between the Jan Mayen Island and the west coast of Greenland. Some proposed origins of the Eggvin Bank are: a distinct plume located beneath Jan Mayen; an extension of the Iceland plume; minor spreading or leakage along West Jan Mayen Fracture Zone (WJMFZ); intruded continental crust extending from Jan Mayen Microcontinent (JMMC); and rifted Greenland sub-continental lithospheric mantle. In this first modern refraction seismic study of the Eggvin Bank, we present a 2D velocity model based on OBS data. The OBSs were deployed approx. N-S over the Eggvin Bank with good data quality constrained by 4 OBSs. The air-gun array used during OBS shooting produced good quality reflection data. Three distinct seamounts are observed along the profile: the northern seamount (water depth 730m), has a flat top with a thin sedimentary veneer on top, which indicates it has been eroded at sea surface; while the southern two seamounts, one (water depth 550m) is less flat with around 100m thick sedimentary units on top, another one is rounded with tiny sedimentary veneer on top having the shallowest water depth (460m). This could suggest that the southern seamounts are younger, since they are shallower but without obvious signs that they were subaerially exposed. However, increased cooling of the lithosphere across the WJMFZ in the north may also contribute to depth differences. A normal fault offsetting sedimentary strata (~300 m) in the Greenland Basin indicates recent tectonic activity north of the Eggvin Bank. The velocity modeling shows crustal thickness with large variations, ranging from 8 km to 14 km, where crustal thickness changes of 4-5 km are associated with 20-30 km wide segments with thick crust under the seamounts. The crust consists of three oceanic crustal layers: upper crust (2.8km/s-4.8km/s); middle crust (5.5 km/s -6.5 km/s); lower crust (6.7 km/s - 7.35 km/s). The high crustal thickness and crustal morphology differ from the more uniform Kolbeinsey Ridge crust to the south, and it may represent oceanic crust with multiphase off-axis volcanic activity.

Earth Observations taken by the Expedition 17 Crew

NASA Image and Video Library

2008-08-19

ISS017-E-013789 (19 Aug. 2008) --- Desert erosion in Libya is featured in this image photographed by an Expedition 17 crewmember on the International Space Station. This detailed view (covering 13 kilometers) shows the classic patterns of an erosional desert landscape located 300 kilometers south of Libya's Mediterranean coast. Widespread indented patterns are low escarpments and stream terraces generated by stream erosion -- on those few occasions in any decade when enough rain falls for streams to flow. The only areas with active sediment deposition are the stream beds which appear in this image as sinuous zones with a distinct component of black minerals, resulting in a darker coloration than adjacent low escarpments. Sediment is transported into the area from a volcanic landscape immediately upstream to the west. Other stream-generated features are several relict stream banks, one of which even shows both of the original parallel banks. According to scientists, the ancient stream banks are preserved from erosion by various hardening cements (mainly calcium carbonate and gypsum) introduced by the streams when they were active, probably during wetter climates in the past two million years. Relict stream courses show prior positions of streams, and also provide Earth analogs for similar features on Mars. The lack of vegetation is the first indication of the great aridity of the region, but sand dunes also appear as sinuous lines oriented perpendicular to the dominant northeasterly wind direction (transverse dunes). Assuming the dominant wind direction remains the same, these transverse dunes are expected to move further to the southwest over time. Some of the dunes cross the river courses, showing how seldom the river flows.

Seedling establishment in a masting desert shrub parallels the pattern for forest trees

NASA Astrophysics Data System (ADS)

Meyer, Susan E.; Pendleton, Burton K.

2015-05-01

The masting phenomenon along with its accompanying suite of seedling adaptive traits has been well studied in forest trees but has rarely been examined in desert shrubs. Blackbrush (Coleogyne ramosissima) is a regionally dominant North American desert shrub whose seeds are produced in mast events and scatter-hoarded by rodents. We followed the fate of seedlings in intact stands vs. small-scale disturbances at four contrasting sites for nine growing seasons following emergence after a mast year. The primary cause of first-year mortality was post-emergence cache excavation and seedling predation, with contrasting impacts at sites with different heteromyid rodent seed predators. Long-term establishment patterns were strongly affected by rodent activity in the weeks following emergence. Survivorship curves generally showed decreased mortality risk with age but differed among sites even after the first year. There were no detectable effects of inter-annual precipitation variability or site climatic differences on survival. Intraspecific competition from conspecific adults had strong impacts on survival and growth, both of which were higher on small-scale disturbances, but similar in openings and under shrub crowns in intact stands. This suggests that adult plants preempted soil resources in the interspaces. Aside from effects on seedling predation, there was little evidence for facilitation or interference beneath adult plant crowns. Plants in intact stands were still small and clearly juvenile after nine years, showing that blackbrush forms cohorts of suppressed plants similar to the seedling banks of closed forests. Seedling banks function in the absence of a persistent seed bank in replacement after adult plant death (gap formation), which is temporally uncoupled from masting and associated recruitment events. This study demonstrates that the seedling establishment syndrome associated with masting has evolved in desert shrublands as well as in forests.

Knowledge and prevalence of risk factors for arterial hypertension and blood pressure pattern among bankers and traffic wardens in Ilorin, Nigeria.

PubMed

Salaudeen, A G; Musa, O I; Babatunde, O A; Atoyebi, O A; Durowade, K A; Omokanye, L O

2014-09-01

High job strain, mental stress, sedentary lifestyle, increase in BMI are among the factors associated with significantly higher incidence of hypertension. The job of bank employees is both sedentary in nature and accompanies high mental stress. The aim of this study is to assess the level of knowledge of risk factors among respondents and to compare the blood pressure pattern of bankers and traffic wardens. The study design is a descriptive cross-sectional conducted among bankers and traffic wardens in Ilorin to determine the pattern and knowledge of blood pressure. Self-administered questionnaires, weighing scale (Omron Digital scale), stadiometer and sphygmomanometer were used as the research instruments. Simple random sampling was used to select respondents involved in the study. The prevalence of hypertension in this study was 34.4% in bankers and 22.2% in traffic wardens. The risk factors the bankers commonly had knowledge of are alcohol, obesity, high salt intake, certain drugs, stress, emotional problems and family history while the traffic wardens commonly had knowledge of all these in addition to cigarette smoking. Also, more bankers (32.2%) than traffic wardens (13.3%) were smoking cigarette and more of these cigarette smokers that are bankers (17.8%) had elevated blood pressure compared to the traffic wardens (3.3%). Workers in the banking industry as well as traffic wardens should be better educated about the risk factors of hypertension and bankers should be encouraged to create time for exercise.

Geographic Variation in Advertisement Calls in a Tree Frog Species: Gene Flow and Selection Hypotheses

PubMed Central

Jang, Yikweon; Hahm, Eun Hye; Lee, Hyun-Jung; Park, Soyeon; Won, Yong-Jin; Choe, Jae C.

2011-01-01

Background In a species with a large distribution relative to its dispersal capacity, geographic variation in traits may be explained by gene flow, selection, or the combined effects of both. Studies of genetic diversity using neutral molecular markers show that patterns of isolation by distance (IBD) or barrier effect may be evident for geographic variation at the molecular level in amphibian species. However, selective factors such as habitat, predator, or interspecific interactions may be critical for geographic variation in sexual traits. We studied geographic variation in advertisement calls in the tree frog Hyla japonica to understand patterns of variation in these traits across Korea and provide clues about the underlying forces for variation. Methodology We recorded calls of H. japonica in three breeding seasons from 17 localities including localities in remote Jeju Island. Call characters analyzed were note repetition rate (NRR), note duration (ND), and dominant frequency (DF), along with snout-to-vent length. Results The findings of a barrier effect on DF and a longitudinal variation in NRR seemed to suggest that an open sea between the mainland and Jeju Island and mountain ranges dominated by the north-south Taebaek Mountains were related to geographic variation in call characters. Furthermore, there was a pattern of IBD in mitochondrial DNA sequences. However, no comparable pattern of IBD was found between geographic distance and call characters. We also failed to detect any effects of habitat or interspecific interaction on call characters. Conclusions Geographic variations in call characters as well as mitochondrial DNA sequences were largely stratified by geographic factors such as distance and barriers in Korean populations of H. japoinca. Although we did not detect effects of habitat or interspecific interaction, some other selective factors such as sexual selection might still be operating on call characters in conjunction with restricted gene flow. PMID:21858061

Size-associated morphological variation in the red tree vole (Arborimus longicaudus)

Treesearch

Mark P. Miller; Eric D. Forsman; James K. Swingle; Stephanie A. Miller; Susan M. Haig

2010-01-01

We examined patterns of size-associated morphological variation within the Red Tree Vole (Arborimus longicaudus) for the purposes of 1) identifying differences between the Red Tree Vole and the Dusky Tree Vole (A. l. silvicola), a putative subspecies of the Red Tree Vole; and 2) examining spatial patterns of morphological...

Short-Term Variations in Response Distribution to Cortical Stimulation

ERIC Educational Resources Information Center

Lesser, Ronald P.; Lee, Hyang Woon; Webber, W. R. S.; Prince, Barry; Crone, Nathan E.; Miglioretti, Diana L.

2008-01-01

Patterns of responses in the cerebral cortex can vary, and are influenced by pre-existing cortical function, but it is not known how rapidly these variations can occur in humans. We investigated how rapidly response patterns to electrical stimulation can vary in intact human brain. We also investigated whether the type of functional change…

Qualitative variation of photolabelled benzodiazepine receptors in different species.

PubMed

Hebebrand, J; Friedl, W; Lentes, K U; Propping, P

1986-01-01

In order to examine whether species differences of benzodiazepine receptor subunits exist, we compared the fluorographic pattern of photoaffinity labelled subunits after SDS-PAGE in five species: fish, frog, chicken, mouse and calf. Each species showed a distinct pattern of specifically labelled proteins. We conclude that species variation of benzodiazepine receptor does indeed exist.

Embracing heterothermic diversity: non-stationary waveform analysis of temperature variation in endotherms.

PubMed

Levesque, Danielle L; Menzies, Allyson K; Landry-Cuerrier, Manuelle; Larocque, Guillaume; Humphries, Murray M

2017-07-01

Recent research is revealing incredible diversity in the thermoregulatory patterns of wild and captive endotherms. As a result of these findings, classic thermoregulatory categories of 'homeothermy', 'daily heterothermy', and 'hibernation' are becoming harder to delineate, impeding our understanding of the physiological and evolutionary significance of variation within and around these categories. However, we lack a generalized analytical approach for evaluating and comparing the complex and diversified nature of the full breadth of heterothermy expressed by individuals, populations, and species. Here we propose a new approach that decomposes body temperature time series into three inherent properties-waveform, amplitude, and period-using a non-stationary technique that accommodates the temporal variability of body temperature patterns. This approach quantifies circadian and seasonal variation in thermoregulatory patterns, and uses the distribution of observed thermoregulatory patterns as a basis for intra- and inter-specific comparisons. We analyse body temperature time series from multiple species, including classical hibernators, tropical heterotherms, and homeotherms, to highlight the approach's general usefulness and the major axes of thermoregulatory variation that it reveals.

Speciation gradients and the distribution of biodiversity.

PubMed

Schluter, Dolph; Pennell, Matthew W

2017-05-31

Global patterns of biodiversity are influenced by spatial and environmental variations in the rate at which new species form. We relate variations in speciation rates to six key patterns of biodiversity worldwide, including the species-area relationship, latitudinal gradients in species and genetic diversity, and between-habitat differences in species richness. Although they sometimes mirror biodiversity patterns, recent rates of speciation, at the tip of the tree of life, are often highest where species richness is low. Speciation gradients therefore shape, but are also shaped by, biodiversity gradients and are often more useful for predicting future patterns of biodiversity than for interpreting the past.

Gene expression underlying adaptive variation in Heliconius wing patterns: non-modular regulation of overlapping cinnabar and vermilion prepatterns.

PubMed

Reed, Robert D; McMillan, W Owen; Nagy, Lisa M

2008-01-07

Geographical variation in the mimetic wing patterns of the butterfly Heliconius erato is a textbook example of adaptive polymorphism; however, little is known about how this variation is controlled developmentally. Using microarrays and qPCR, we identified and compared expression of candidate genes potentially involved with a red/yellow forewing band polymorphism in H. erato. We found that transcripts encoding the pigment synthesis enzymes cinnabar and vermilion showed pattern- and polymorphism-related expression patterns, respectively. cinnabar expression was associated with the forewing band regardless of pigment colour, providing the first gene expression pattern known to be correlated with a major Heliconius colour pattern. In contrast, vermilion expression changed spatially over time in red-banded butterflies, but was not expressed at detectable levels in yellow-banded butterflies, suggesting that regulation of this gene may be involved with the red/yellow polymorphism. Furthermore, we found that the yellow pigment, 3-hydroxykynurenine, is incorporated into wing scales from the haemolymph rather than being synthesized in situ. We propose that some aspects of Heliconius colour patterns are determined by spatio-temporal overlap of pigment gene transcription prepatterns and speculate that evolutionary changes in vermilion regulation may in part underlie an adaptive colour pattern polymorphism.

Organic micropollutant removal from wastewater effluent-impacted drinking water sources during bank filtration and artificial recharge.

PubMed

Maeng, Sung Kyu; Ameda, Emmanuel; Sharma, Saroj K; Grützmacher, Gesche; Amy, Gary L

2010-07-01

Natural treatment systems such as bank filtration (BF) and artificial recharge (via an infiltration basin) are a robust barrier for many organic micropollutants (OMPs) and may represent a low-cost alternative compared to advanced drinking water treatment systems. This study analyzes a comprehensive database of OMPs at BF and artificial recharge (AR) sites located near Lake Tegel in Berlin (Germany). The focus of the study was on the derivation of correlations between the removal efficiencies of OMPs and key factors influencing the performance of BF and AR. At the BF site, shallow monitoring wells located close to the Lake Tegel source exhibited oxic conditions followed by prolonged anoxic conditions in deep monitoring wells and a production well. At the AR site, oxic conditions prevailed from the recharge pond along monitoring wells to the production well. Long residence times of up to 4.5 months at the BF site reduced the temperature variation during soil passage between summer and winter. The temperature variations were greater at the AR site as a consequence of shorter residence times. Deep monitoring wells and the production well located at the BF site were under the influence of ambient groundwater and old bank filtrate (up to several years of age). Thus, it is important to account for mixing with native groundwater and other sources (e.g., old bank filtrate) when estimating the performance of BF with respect to removal of OMPs. Principal component analysis (PCA) was used to investigate correlations between OMP removals and hydrogeochemical conditions with spatial and temporal parameters (e.g., well distance, residence time and depth) from both sites. Principal component-1 (PC1) embodied redox conditions (oxidation-reduction potential and dissolved oxygen), and principal component-2 (PC2) embodied degradation potential (e.g., total organic carbon and dissolved organic carbon) with the calcium carbonate dissolution potential (Ca(2+) and HCO(3)(-)) for the BF site. These two PCs explained a total variance of 55% at the BF site. At the AR site, PCA revealed redox conditions (PC1) and degradation potential with temperature (PC2) as principal components, which explained a total variance of 56%. Copyright 2010 Elsevier Ltd. All rights reserved.

Phytogeographic patterns and cryptic diversity in an aposematic toad from NW Argentina.

PubMed

Clemente-Carvalho, Rute B; Vaira, Marcos; King, Laura E; Koscinski, Daria; Bonansea, Maria I; Lougheed, Stephen C

2017-11-01

The Yungas Redbelly Toad, Melanophryniscus rubriventris, is patchily distributed in Argentina, confined to the upland portion (1000-2000m above sea level) of the montane forests of northern and central regions of Salta, and in central-eastern and south-eastern Jujuy. This species is known for its striking aposematic color variation across its geographic distribution, and was once treated as a complex of three subspecies based on distinctive color patterns. Here we assess the geographical genetic variation within M. rubriventris and quantify divergence in color and pattern among individuals sampled from Northwestern Argentina. We compare multi-gene phylogeography of M. rubriventris to patterns of dorsal and ventral coloration to test whether evolutionary affinities predict variation in warning color. Our results reveal two well-supported species lineages: one confined to the extreme northern portion of our sampling area, and the other extending over most of the Argentine portion of the species' range, within which there are two populations. However, these well-supported evolutionary relationships do not mirror the marked variation in warning coloration. This discordance between DNA genealogy and warning color variation may reflect selection brought about by differences in local predation pressures, potentially coupled with effects of sexual selection and thermoregulation. Copyright © 2017 Elsevier Inc. All rights reserved.

Intrapopulation variation in stature and body proportions: social status and sex differences in an Italian medieval population (Trino Vercellese, VC).

PubMed

Vercellotti, Giuseppe; Stout, Sam D; Boano, Rosa; Sciulli, Paul W

2011-06-01

The phenotypic expression of adult body size and shape results from synergistic interactions between hereditary factors and environmental conditions experienced during growth. Variation in body size and shape occurs even in genetically relatively homogeneous groups, due to different occurrence, duration, and timing of growth insults. Understanding the causes and patterns of intrapopulation variation can foster meaningful information on early life conditions in living and past populations. This study assesses the pattern of biological variation in body size and shape attributable to sex and social status in a medieval Italian population. The sample includes 52 (20 female, 32 male) adult individuals from the medieval population of Trino Vercellese, Italy. Differences in element size and overall body size (skeletal height and body mass) were assessed through Monte Carlo methods, while univariate non-parametric tests and Principal Component Analysis (PCA) were employed to examine segmental and overall body proportions. Discriminant Analysis was employed to determine the predictive value of individual skeletal elements for social status in the population. Our results highlight a distinct pattern in body size and shape variation in relation to status and sex. Male subsamples exhibit significant postcranial variation in body size, while female subsamples express smaller, nonsignificant differences. The analysis of segmental proportions highlighted differences in trunk/lower limb proportions between different status samples, and PCA indicated that in terms of purely morphological variation high status males were distinct from all other groups. The pattern observed likely resulted from a combination of biological factors and cultural practices. Copyright © 2011 Wiley-Liss, Inc.

Patterns of Variation for the Sun and Sun-like Stars

NASA Astrophysics Data System (ADS)

Radick, Richard R.; Lockwood, G. Wesley; Henry, Gregory W.; Hall, Jeffrey C.; Pevtsov, Alexei A.

2018-03-01

We compare patterns of variation for the Sun and 72 Sun-like stars by combining total and spectral solar irradiance measurements between 2003 and 2017 from the SORCE satellite, Strömgren b, y stellar photometry between 1993 and 2017 from Fairborn Observatory, and solar and stellar chromospheric Ca II H+K emission observations between 1992 and 2016 from Lowell Observatory. The new data and their analysis strengthen the relationships found previously between chromospheric and brightness variability on the decadal timescale of the solar activity cycle. Both chromospheric H+K and photometric b, y variability among Sun-like stars are related to average chromospheric activity by power laws on this timescale. Young active stars become fainter as their H+K emission increases, and older, less active, more Sun-age stars tend to show a pattern of direct correlation between photometric and chromospheric emission variations. The directly correlated pattern between total solar irradiance and chromospheric Ca II emission variations shown by the Sun appears to extend also to variations in the Strömgren b, y portion of the solar spectrum. Although the Sun does not differ strongly from its stellar age and spectral class mates in the activity and variability characteristics that we have now studied for over three decades, it may be somewhat unusual in two respects: (1) its comparatively smooth, regular activity cycle, and (2) its rather low photometric brightness variation relative to its chromospheric activity level and variation, perhaps indicating that facular emission and sunspot darkening are especially well-balanced on the Sun.

A Coral-based Reconstruction of Sea Surface Salinity at Sabine Bank, Vanuatu from 2007 to 1843 CE

NASA Astrophysics Data System (ADS)

Gorman, M. K.; Quinn, T. M.; Taylor, F. W.; Dunn, E. M.; Cabioch, G.; Ballu, V.; Maes, C.; Austin, J. A.; Saustrup, S.; Pelletier, B.

2011-12-01

We present a reconstruction of sea surface salinity (SSS) derived from a coral δ18O time series extending from 2007-1843 CE at Sabine Bank, Vanuatu (SBV, 166.04° E, 15.94°S). This reconstruction is significant because instrumental records of SSS are rare in time and space, yet the SSS response to the El Niño Southern Oscillation (ENSO) forcing is large in many regions of the tropical oceans. There is a strong positive relationship between sea surface temperature anomalies (SSTA) in the central Pacific (Niño 3.4 region; canonical ENSO signal) and six month lagged sea surface salinity anomalies (SSSA, data from Delcroix et al., 2011) at SBV, which establishes a dynamical link between surface ocean variability at SBV and ENSO variability. We calculate a coral δ18O anomaly time series and note that there is a strong correlation between it and instrumental SSS variations over the period 1970-2007 (r = 0.70, p < 0.01). We compute a linear transfer function that we use to predict SSS variations given observed coral δ18O variations. A calibration-verification exercise conducted over two intervals (1970-1987, 1988-2007) resulted in similar correlations between instrumental and reconstructed SSS for both time periods, which provides confidence in our SSS reconstructions in the pre-1970 interval. We further test our SBV transfer function by applying it to a previously published coral δ18O record from Malo Channel, Vanuatu (Kilbourne et al., 2004b), located 130 km to the east of Sabine Bank. The reconstructed SSS time series from the two locations over their common time interval (1991-1939 CE) are nearly always the same within error, indicating that the ENSO-influenced salinity signal is regional in extent, and can be reconstructed using coral δ18O records from Vanuatu. We observe high salinity excursions (>0.5 psu) pre-1970 corresponding to strong ENSO warm phase events recorded in the SST instrumental record and historical ENSO record (i.e. 1941-42, 1918-19, 1877-78), and an overall freshening trend, demonstrating the ability of our reconstructed dataset to capture interannual variability as well as long-term trends in SSS at Vanuatu.

The Influence of Weather Variation, Urban Design and Built Environment on Objectively Measured Sedentary Behaviour in Children.

PubMed

Katapally, Tarun Reddy; Rainham, Daniel; Muhajarine, Nazeem

2016-01-01

With emerging evidence indicating that independent of physical activity, sedentary behaviour (SB) can be detrimental to health, researchers are increasingly aiming to understand the influence of multiple contexts such as urban design and built environment on SB. However, weather variation, a factor that continuously interacts with all other environmental variables, has been consistently underexplored. This study investigated the influence of diverse environmental exposures (including weather variation, urban design and built environment) on SB in children. This cross-sectional observational study is part of an active living research initiative set in the Canadian prairie city of Saskatoon. Saskatoon's neighbourhoods were classified based on urban street design into grid-pattern, fractured grid-pattern and curvilinear types of neighbourhoods. Diverse environmental exposures were measured including, neighbourhood built environment, and neighbourhood and household socioeconomic environment. Actical accelerometers were deployed between April and June 2010 (spring-summer) to derive SB of 331 10-14 year old children in 25 one week cycles. Each cycle of accelerometry was conducted on a different cohort of children within the total sample. Accelerometer data were matched with localized weather patterns derived from Environment Canada weather data. Multilevel modeling using Hierarchical Linear and Non-linear Modeling software was conducted by factoring in weather variation to depict the influence of diverse environmental exposures on SB. Both weather variation and urban design played a significant role in SB. After factoring in weather variation, it was observed that children living in grid-pattern neighbourhoods closer to the city centre (with higher diversity of destinations) were less likely to be sedentary. This study demonstrates a methodology that could be replicated to integrate geography-specific weather patterns with existing cross-sectional accelerometry data to understand the influence of urban design and built environment on SB in children.

Time-series analysis of multiple foreign exchange rates using time-dependent pattern entropy

NASA Astrophysics Data System (ADS)

Ishizaki, Ryuji; Inoue, Masayoshi

2018-01-01

Time-dependent pattern entropy is a method that reduces variations to binary symbolic dynamics and considers the pattern of symbols in a sliding temporal window. We use this method to analyze the instability of daily variations in multiple foreign exchange rates. The time-dependent pattern entropy of 7 foreign exchange rates (AUD/USD, CAD/USD, CHF/USD, EUR/USD, GBP/USD, JPY/USD, and NZD/USD) was found to be high in the long period after the Lehman shock, and be low in the long period after Mar 2012. We compared the correlation matrix between exchange rates in periods of high and low of the time-dependent pattern entropy.

Species identification of medicinal pteridophytes by a DNA barcode marker, the chloroplast psbA-trnH intergenic region.

PubMed

Ma, Xin-Ye; Xie, Cai-Xiang; Liu, Chang; Song, Jing-Yuan; Yao, Hui; Luo, Kun; Zhu, Ying-Jie; Gao, Ting; Pang, Xiao-Hui; Qian, Jun; Chen, Shi-Lin

2010-01-01

Medicinal pteridophytes are an important group used in traditional Chinese medicine; however, there is no simple and universal way to differentiate various species of this group by morphological traits. A novel technology termed "DNA barcoding" could discriminate species by a standard DNA sequence with universal primers and sufficient variation. To determine whether DNA barcoding would be effective for differentiating pteridophyte species, we first analyzed five DNA sequence markers (psbA-trnH intergenic region, rbcL, rpoB, rpoC1, and matK) using six chloroplast genomic sequences from GeneBank and found psbA-trnH intergenic region the best candidate for availability of universal primers. Next, we amplified the psbA-trnH region from 79 samples of medicinal pteridophyte plants. These samples represented 51 species from 24 families, including all the authentic pteridophyte species listed in the Chinese pharmacopoeia (2005 version) and some commonly used adulterants. We found that the sequence of the psbA-trnH intergenic region can be determined with both high polymerase chain reaction (PCR) amplification efficiency (94.1%) and high direct sequencing success rate (81.3%). Combined with GeneBank data (54 species cross 12 pteridophyte families), species discriminative power analysis showed that 90.2% of species could be separated/identified successfully by the TaxonGap method in conjunction with the Basic Local Alignment Search Tool 1 (BLAST1) method. The TaxonGap method results further showed that, for 37 out of 39 separable species with at least two samples each, between-species variation was higher than the relevant within-species variation. Thus, the psbA-trnH intergenic region is a suitable DNA marker for species identification in medicinal pteridophytes.

Characteristics of ACS-verified Level I and Level II trauma centers: A study linking trauma center verification review data and the National Trauma Data Bank of the American College of Surgeons Committee on Trauma.

PubMed

Shafi, Shahid; Barnes, Sunni; Ahn, Chul; Hemilla, Mark R; Cryer, H Gill; Nathens, Avery; Neal, Melanie; Fildes, John

2016-10-01

The Trauma Quality Improvement Project of the American College of Surgeons (ACS) has demonstrated variations in trauma center outcomes despite similar verification status. The purpose of this study was to identify structural characteristics of trauma centers that affect patient outcomes. Trauma registry data on 361,187 patients treated at 222 ACS-verified Level I and Level II trauma centers were obtained from the National Trauma Data Bank of ACS. These data were used to estimate each center's observed-to-expected (O-E) mortality ratio with 95% confidence intervals using multivariate logistic regression analysis. De-identified data on structural characteristics of these trauma centers were obtained from the ACS Verification Review Committee. Centers in the lowest quartile of mortality based on O-E ratio (n = 56) were compared to the rest (n = 166) using Classification and Regression Tree (CART) analysis to identify institutional characteristics independently associated with high-performing centers. Of the 72 structural characteristics explored, only 3 were independently associated with high-performing centers: annual patient visits to the emergency department of fewer than 61,000; proportion of patients on Medicare greater than 20%; and continuing medical education for emergency department physician liaison to the trauma program ranging from 55 and 113 hours annually. Each 5% increase in O-E mortality ratio was associated with an increase in total length of stay of one day (r = 0.25; p < 0.001). Very few structural characteristics of ACS-verified trauma centers are associated with risk-adjusted mortality. Thus, variations in patient outcomes across trauma centers are likely related to variations in clinical practices. Therapeutic study, level III.

Wavelet filter analysis of local atmospheric pressure effects in the long-period tidal bands

NASA Astrophysics Data System (ADS)

Hu, X.-G.; Liu, L. T.; Ducarme, B.; Hsu, H. T.; Sun, H.-P.

2006-11-01

It is well known that local atmospheric pressure variations obviously affect the observation of short-period Earth tides, such as diurnal tides, semi-diurnal tides and ter-diurnal tides, but local atmospheric pressure effects on the long-period Earth tides have not been studied in detail. This is because the local atmospheric pressure is believed not to be sufficient for an effective pressure correction in long-period tidal bands, and there are no efficient methods to investigate local atmospheric effects in these bands. The usual tidal analysis software package, such as ETERNA, Baytap-G and VAV, cannot provide detailed pressure admittances for long-period tidal bands. We propose a wavelet method to investigate local atmospheric effects on gravity variations in long-period tidal bands. This method constructs efficient orthogonal filter bank with Daubechies wavelets of high vanishing moments. The main advantage of the wavelet filter bank is that it has excellent low frequency response and efficiently suppresses instrumental drift of superconducting gravimeters (SGs) without using any mathematical model. Applying the wavelet method to the 13-year continuous gravity observations from SG T003 in Brussels, Belgium, we filtered 12 long-period tidal groups into eight narrow frequency bands. Wavelet method demonstrates that local atmospheric pressure fluctuations are highly correlated with the noise of SG measurements in the period band 4-40 days with correlation coefficients higher than 0.95 and local atmospheric pressure variations are the main error source for the determination of the tidal parameters in these bands. We show the significant improvement of long-period tidal parameters provided by wavelet method in term of precision.

Mining sequential patterns for protein fold recognition.

PubMed

Exarchos, Themis P; Papaloukas, Costas; Lampros, Christos; Fotiadis, Dimitrios I

2008-02-01

Protein data contain discriminative patterns that can be used in many beneficial applications if they are defined correctly. In this work sequential pattern mining (SPM) is utilized for sequence-based fold recognition. Protein classification in terms of fold recognition plays an important role in computational protein analysis, since it can contribute to the determination of the function of a protein whose structure is unknown. Specifically, one of the most efficient SPM algorithms, cSPADE, is employed for the analysis of protein sequence. A classifier uses the extracted sequential patterns to classify proteins in the appropriate fold category. For training and evaluating the proposed method we used the protein sequences from the Protein Data Bank and the annotation of the SCOP database. The method exhibited an overall accuracy of 25% in a classification problem with 36 candidate categories. The classification performance reaches up to 56% when the five most probable protein folds are considered.

Patterns of seasonal variation in lagoonal macrozoobenthic assemblages (Mellah lagoon, Algeria).

PubMed

Magni, Paolo; Draredja, Brahim; Melouah, Khalil; Como, Serena

2015-08-01

In coastal lagoons, many studies indicated that macrozoobenthic assemblages undergo marked temporal fluctuations as related to the strong environmental variability of these systems. However, most of these studies have not assessed the seasonal patterns of these fluctuations and none of them has investigated the consistency of this variation in different areas within the same lagoon system. In this study, we assessed patterns of variation at multiple temporal (date, season and year) scales in two different areas in the coastal lagoon of Mellah (northeast Algeria). These areas (hereafter Shore and Center) are representative of two different environments typically found in coastal lagoons. The Shore (water depth of about 1.5-2 m) is characterized by relatively higher hydrodynamics, sand to silty-sand sediments and the presence of vegetation (Ruppia maritima), the Center (water depth of about 3-3.5 m) is characterized by mud to sandy-mud, organic-enriched sediments due to fine particle accumulation. Results showed two distinct patterns of seasonal variation in Shore and Center assemblages for two consecutive years. In Shore, species richness (S), total abundance (N) and the abundance of several dominant taxa were highest in summer and/or autumn. This pattern can be related to the local environmental conditions maintaining relatively well oxidized conditions, while increasing food availability, and favoring the recruitment of species and individuals in summer/autumn. On the contrary in Center, S was lowest in summer and autumn, and N and the abundance of fewer dominant taxa were lowest in summer. In Center, the bivalve Loripes lucinalis showed a 10-fold increase from summer to autumn in both years, likely related to the lagoon's hydrodynamics favoring larval transport and settlement in the central sector of the lagoon. Overall, the seasonal variation found in Center followed a regression/recovery pattern typical of opportunistic assemblages occurring in confined organic-enriched environments. In conclusion, our results provide new insight into the patterns of seasonal variation in lagoon soft-sediment benthos and highlight the importance of local environmental conditions on this variation. This study provides a valuable tool for adopting appropriate monitoring strategies in these systems, with special reference to Southern-Eastern Mediterranean lagoons which are expected to suffer from increasing coastal development and human pressure in the near future. Copyright © 2015 Elsevier Ltd. All rights reserved.

Diurnal lighting patterns and habitat alter opsin expression and colour preferences in a killifish

PubMed Central

Johnson, Ashley M.; Stanis, Shannon; Fuller, Rebecca C.

2013-01-01

Spatial variation in lighting environments frequently leads to population variation in colour patterns, colour preferences and visual systems. Yet lighting conditions also vary diurnally, and many aspects of visual systems and behaviour vary over this time scale. Here, we use the bluefin killifish (Lucania goodei) to compare how diurnal variation and habitat variation (clear versus tannin-stained water) affect opsin expression and the preference to peck at different-coloured objects. Opsin expression was generally lowest at midnight and dawn, and highest at midday and dusk, and this diurnal variation was many times greater than variation between habitats. Pecking preference was affected by both diurnal and habitat variation but did not correlate with opsin expression. Rather, pecking preference matched lighting conditions, with higher preferences for blue at noon and for red at dawn/dusk, when these wavelengths are comparatively scarce. Similarly, blue pecking preference was higher in tannin-stained water where blue wavelengths are reduced. In conclusion, L. goodei exhibits strong diurnal cycles of opsin expression, but these are not tightly correlated with light intensity or colour. Temporally variable pecking preferences probably result from lighting environment rather than from opsin production. These results may have implications for the colour pattern diversity observed in these fish. PMID:23698009

Pacific/North American teleconnection controls on precipitation isotope ratios across the contiguous United States

NASA Astrophysics Data System (ADS)

Liu, Zhongfang; Kennedy, Casey D.; Bowen, Gabriel J.

2011-10-01

Large-scale climate teleconnections such as the Pacific/North American (PNA) pattern strongly influence atmospheric processes and continental climate. Here we show that precipitation δ 18O values in the contiguous United States are correlated with an index of the PNA pattern. The δ 18O/PNA relationship varies across the study region and exhibits two prominent modes, with positive correlation in the western USA and negative correlation in the east. This spatial pattern appears not to reflect variation in local climate variables, but rather primarily reflects differences in atmospheric circulation and moisture sources associated with PNA. Our results suggest that strong antiphase variation in paired paleo-water δ 18O proxy records from regions characterized by the two modes of δ 18O/PNA correlation, especially in the Midwest and southwestern USA, may provide a robust basis for reconstruction of past variation in the PNA pattern.

Exploring the interaction between O₃ and NOx pollution patterns in the atmosphere of Barcelona, Spain using the MCR-ALS method.

PubMed

Malik, Amrita; Tauler, Roma

2015-06-01

This work focuses on understanding the behaviour and patterns of three atmospheric pollutants namely, nitric oxide (NO), nitrogen dioxide (NO2), and ozone (O3) along with their mutual interactions in the atmosphere of Barcelona, North Spain. Hourly samples were collected for NO, NO2 and O3 from the same city location for three consecutive years (2010-2012). The study explores the seasonal, annual and weekday-weekend variations in their diurnal profiles along with the possible identification of their source and mutual interactions in the region. Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) was applied to the individual datasets of these pollutants, as well as to all of them simultaneously (augmented mode) to resolve the profiles related to their source and variation patterns in the atmosphere. The analysis of the individual datasets confirmed the source pattern variations in the concerned pollutant's profiles; and the resolved profiles for augmented datasets suggested for the mutual interaction of the pollutants along with their patterns variations, simultaneously. The study suggests vehicular pollution as the major source of atmospheric nitrogen oxides and presence of weekend ozone effect in the region. Copyright © 2015 Elsevier B.V. All rights reserved.

Variable coloration is associated with dampened population fluctuations in noctuid moths

PubMed Central

Forsman, Anders; Betzholtz, Per-Eric; Franzén, Markus

2015-01-01

Theory and recent reviews state that greater genetic and phenotypic variation should be beneficial for population abundance and stability. Experimental evaluations of this prediction are rare, of short duration and conducted under controlled environmental settings. The question whether greater diversity in functionally important traits stabilizes populations under more complex ecological conditions in the wild has not been systematically evaluated. Moths are mainly nocturnal, with a large variation in colour patterns among species, and constitute an important food source for many types of organisms. Here, we report the results of a long-term (2003–2013) monitoring study of 115 100 noctuid moths from 246 species. Analysis of time-series data provide rare evidence that species with higher levels of inter-individual variation in colour pattern have higher average abundances and undergo smaller between-year fluctuations compared with species having less variable colour patterns. The signature of interspecific temporal synchronization of abundance fluctuations was weak, suggesting that the dynamics were driven by species-specific biotic interactions rather than by some common, density-independent factor(s). We conclude that individual variation in colour patterns dampens population abundance fluctuations, and suggest that this may partly reflect that colour pattern polymorphism provides protection from visually oriented predators and parasitoids. PMID:25972462

Effects of river geomorphology on the spatial importance of aquatic energy flows into terrestrial food webs

NASA Astrophysics Data System (ADS)

Muehlbauer, J. D.; Doyle, M. W.; Tockner, K.

2011-12-01

This presentation will present the results of a meta-analysis on river-floodplain carbon/energy subsidies. This analysis combines data from the existing body of literature (ca. 100 studies) to determine a "stream signature:" a regression equation that fits the decline in aquatic-derived energy in terrestrial predator food webs as a function of distance from the river. The nature of this decay curve and its implications for river/riparian ecological dynamics will be desrcibed. Variation in this metric due to the influence of stream order, river bank characteristics, and channel geomorphology will be assessed. In addition, the implications of variation in the stream signature for terrestrial aquatic food webs under different geomorphic and anthropogenic scenarios will be discussed.

[Transfer characteristic and source identification of soil heavy metals from water-level-fluctuating zone along Xiangxi River, three-Gorges Reservoir area].

PubMed

Xu, Tao; Wang, Fei; Guo, Qiang; Nie, Xiao-Qian; Huang, Ying-Ping; Chen, Jun

2014-04-01

Transfer characteristics of heavy metals and their evaluation of potential risk were studied based on determining concentration of heavy metal in soils from water-level-fluctuating zone (altitude:145-175 m) and bank (altitude: 175-185 m) along Xiangxi River, Three Gorges Reservoir area. Factor analysis-multiple linear regression (FA-MLR) was employed for heavy metal source identification and source apportionment. Results demonstrate that, during exposing season, the concentration of soil heavy metals in water-level-fluctuation zone and bank showed the variation, and the concentration of soil heavy metals reduced in shallow soil, but increased in deep soil at water-level-fluctuation zone. However, the concentration of soil heavy metals reduced in both shallow and deep soil at bank during the same period. According to the geoaccumulation index,the pollution extent of heavy metals followed the order: Cd > Pb > Cu > Cr, Cd is the primary pollutant. FA and FA-MLR reveal that in soils from water-level-fluctuation zone, 75.60% of Pb originates from traffic, 62.03% of Cd is from agriculture, 64.71% of Cu and 75.36% of Cr are from natural rock. In soils from bank, 82.26% of Pb originates from traffic, 68.63% of Cd is from agriculture, 65.72% of Cu and 69.33% of Cr are from natural rock. In conclusion, FA-MLR can successfully identify source of heavy metal and compute source apportionment of heavy metals, meanwhile the transfer characteristic is revealed. All these information can be a reference for heavy metal pollution control.

Using altimetry and seafloor pressure data to estimate vertical deformation offshore: Vanuatu case study

NASA Astrophysics Data System (ADS)

Ballu, V.; Bonnefond, P.; Calmant, S.; Bouin, M.-N.; Pelletier, B.; Laurain, O.; Crawford, W. C.; Baillard, C.; de Viron, O.

2013-04-01

Measuring ground deformation underwater is essential for understanding Earth processes at many scales. One important example is subduction zones, which can generate devastating earthquakes and tsunamis, and where the most important deformation signal related to plate locking is usually offshore. We present an improved method for making offshore vertical deformation measurements, that involve combining tide gauge and altimetry data. We present data from two offshore sites located on either side of the plate interface at the New Hebrides subduction zone, where the Australian plate subducts beneath the North Fiji basin. These two sites have been equipped with pressure gauges since 1999, to extend an on-land GPS network across the plate interface. The pressure series measured at both sites show that Wusi Bank, located on the over-riding plate, subsides by 11 ± 4 mm/yr with respect to Sabine Bank, which is located on the down-going plate. By combining water depths derived from the on-bottom pressure data with sea surface heights derived from altimetry data, we determine variations of seafloor heights in a global reference frame. Using altimetry data from TOPEX/Poseidon, Jason-1, Jason-2 and Envisat missions, we find that the vertical motion at Sabine Bank is close to zero and that Wusi Bank subsides by at least 3 mm/yr and probably at most 11 mm/yr.This paper represents the first combination of altimetry and pressure data to derive absolute vertical motions offshore. The deformation results are obtained in a global reference frame, allowing them to be integrated with on-land GNSS data.

Genetic divergence and diversity in the Mona and Virgin Islands Boas, Chilabothrus monensis (Epicrates monensis) (Serpentes: Boidae), West Indian snakes of special conservation concern.

PubMed

Rodríguez-Robles, Javier A; Jezkova, Tereza; Fujita, Matthew K; Tolson, Peter J; García, Miguel A

2015-07-01

Habitat fragmentation reduces the extent and connectivity of suitable habitats, and can lead to changes in population genetic structure. Limited gene flow among isolated demes can result in increased genetic divergence among populations, and decreased genetic diversity within demes. We assessed patterns of genetic variation in the Caribbean boa Chilabothrus monensis (Epicrates monensis) using two mitochondrial and seven nuclear markers, and relying on the largest number of specimens of these snakes examined to date. Two disjunct subspecies of C. monensis are recognized: the threatened C. m. monensis, endemic to Mona Island, and the rare and endangered C. m. granti, which occurs on various islands of the Puerto Rican Bank. Mitochondrial and nuclear markers revealed unambiguous genetic differences between the taxa, and coalescent species delimitation methods indicated that these snakes likely are different evolutionary lineages, which we recognize at the species level, C. monensis and C. granti. All examined loci in C. monensis (sensu stricto) are monomorphic, which may indicate a recent bottleneck event. Each population of C. granti exclusively contains private mtDNA haplotypes, but five of the seven nuclear genes assayed are monomorphic, and nucleotide diversity is low in the two remaining markers. The faster pace of evolution of mtDNA possibly reflects the present-day isolation of populations of C. granti, whereas the slower substitution rate of nuDNA may instead mirror the relatively recent episodes of connectivity among the populations facilitated by the lower sea level during the Pleistocene. The small degree of overall genetic variation in C. granti suggests that demes of this snake could be managed as a single unit, a practice that would significantly increase their effective population size. Copyright © 2015 Elsevier Inc. All rights reserved.

Retrieval of Understory NDVI in Sparse Boreal Forests By MODIS Brdf Data

NASA Astrophysics Data System (ADS)

Yang, W.; Kobayashi, H.; Suzuki, R.; Nasahara, K. N.

2014-12-01

Global products of leaf area index (LAI) usually show large uncertainties in sparsely vegetated areas. The reason is that the understory contribution is not negligible in reflectance modeling for the case of low to intermediate canopy cover. Therefore many efforts have been carried out on inclusion of understory properties in the LAI estimation algorithms. Compared with conventional data bank method, estimation of forest understory property from satellite data is superior in the studies at global or continental scale during a long periods. However, the existing remote sensing method based on multi-angular observations is very complicated to implement. Alternatively, a simple method to retrieve understory NDVI (NDVIu) for sparse boreal forests was proposed in this study. The method is based on the property that the bi-directional variation of NDVIu is much smaller than that of the canopy-level NDVI. To retrieve NDVIu for a certain pixel, linear extrapolation was applied using the pixels within a 5×5 target-pixel-centered window. The NDVI values were reconstructed from the MODIS BRDF data corresponding to eight different solar-view angles. NDVIu was estimated as the average of the NDVI values corresponding to the position where the stand NDVI has the smallest angular variation. Validation by noise-free simulation dataset yielded high agreement between estimated and true NDVIu with R2 and RMSE of 0.99 and 0.03, respectively. By the MODIS BRDF data, we got the estimate of NDVIu close to the in situ measured value (0.61 vs. 0.66 for estimate and measurement, respectively), and also reasonable seasonal patterns of NDVIu in 2010-2013. The results imply a potential application of the retrieved NDVIu to improve the estimation of overstory LAI for sparse boreal forests.

Describing temporal variation in reticuloruminal pH using continuous monitoring data.

PubMed

Denwood, M J; Kleen, J L; Jensen, D B; Jonsson, N N

2018-01-01

Reticuloruminal pH has been linked to subclinical disease in dairy cattle, leading to considerable interest in identifying pH observations below a given threshold. The relatively recent availability of continuously monitored data from pH boluses gives new opportunities for characterizing the normal patterns of pH over time and distinguishing these from abnormal patterns using more sensitive and specific methods than simple thresholds. We fitted a series of statistical models to continuously monitored data from 93 animals on 13 farms to characterize normal variation within and between animals. We used a subset of the data to relate deviations from the normal pattern to the productivity of 24 dairy cows from a single herd. Our findings show substantial variation in pH characteristics between animals, although animals within the same farm tended to show more consistent patterns. There was strong evidence for a predictable diurnal variation in all animals, and up to 70% of the observed variation in pH could be explained using a simple statistical model. For the 24 animals with available production information, there was also a strong association between productivity (as measured by both milk yield and dry matter intake) and deviations from the expected diurnal pattern of pH 2 d before the productivity observation. In contrast, there was no association between productivity and the occurrence of observations below a threshold pH. We conclude that statistical models can be used to account for a substantial proportion of the observed variability in pH and that future work with continuously monitored pH data should focus on deviations from a predictable pattern rather than the frequency of observations below an arbitrary pH threshold. Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Macroevolutionary patterns of ultraviolet floral pigmentation explained by geography and associated bioclimatic factors.

PubMed

Koski, Matthew H; Ashman, Tia-Lynn

2016-07-01

Selection driven by biotic interactions can generate variation in floral traits. Abiotic selection, however, also contributes to floral diversity, especially with respect to patterns of pigmentation. Combining comparative studies of floral pigmentation and geography can reveal the bioclimatic factors that may drive macroevolutionary patterns of floral color. We create a molecular phylogeny and measure ultraviolet (UV) floral pattern for 177 species in the Potentilleae tribe (Rosaceae). Species are similar in flower shape and visible color but vary in UV floral pattern. We use comparative approaches to determine whether UV pigmentation variation is associated with geography and/or bioclimatic features (UV-B, precipitation, temperature). Floral UV pattern was present in half of the species, while others were uniformly UV-absorbing. Phylogenetic signal was detected for presence/absence of pattern, but among patterned species, quantitative variation in UV-absorbing area was evolutionarily labile. Uniformly UV-absorbing species tended to experience higher UV-B irradiance. Patterned species occurring at higher altitudes had larger UV-absorbing petal areas, corresponding with low temperature and high UV exposure. This analysis expands our understanding of the covariation of UV-B irradiance and UV floral pigmentation from within species to that among species, and supports the view that abiotic selection is associated with floral diversification among species. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Spatial and temporal variation in biting rates and parasite transmission potentials of onchocerciasis vectors in Ecuador.

PubMed

Vieira, J C; Brackenboro, L; Porter, C H; Basáñez, M-G; Collins, R C

2005-03-01

The influence of spatial and temporal factors on onchocerciasis transmission by Simulium exiguum s.l. and S. quadrivittatum in Ecuador was investigated to help develop sampling protocols for entomological surveillance of ivermectin programmes. Flies were collected in alternate months (November 1995-November 1996) at four sites each in the hyperendemic communities of San Miguel and El Tigre. A fixed-effects analysis of variance was used to explore the influence on vector abundance of locality, site, month and hour. Infectivity rates detected by dissection and PCR assays were compared. Simulium exiguum s.l. predominated at El Tigre (75%) whereas S. quadrivittatum prevailed at San Miguel (62%). Vector abundance was highest on river banks and outside houses. Biting and infection rates peaked from March to July. Hourly activity patterns were bimodal in S. exiguum but unimodal in S. quadrivittatum. Annual transmission potentials (ATP) for both species combined were 385 and 733 third stage larvae/person in San Miguel and El Tigre respectively, with S. exiguum accounting for 80% of the combined ATP at both localities. We recommend protocols that may maximize detection of parasite transmission. Infection rates thus obtained must be linked with vector density estimates to assess meaningfully host exposure as treatment progresses.

Long-term population patterns of rodents and associated damage in German forestry.

PubMed

Imholt, Christian; Reil, Daniela; Plašil, Pavel; Rödiger, Kerstin; Jacob, Jens

2017-02-01

Several rodent species can damage forest trees, especially at young tree age in afforestation. Population outbreaks of field voles (Microtus agrestis L.) and bank voles (Myodes glareolus Schreber) in particular can cause losses. Analyses of long-term time series indicate good synchrony of population abundance in rodent species associated with damage in forestry. This synchrony could be related to the effect of beech (Fagus spec.) mast in the previous year on population growth rates of both species. In shorter time series from Eastern Germany, damage in forestry was mostly associated with autumn abundances of rodents. Environmental factors such as beech mast and snow cover did not explain additional variation in rodent damage to trees. Beech mast is a good indicator of long-term rodent abundance in Northern German afforestation areas. However, rodent damage to forestry in Central Germany did not seem to depend on environmental parameters other than rodent abundance at large scale. As a result, there is still uncertainty about the link between environmental predictors and rodent damage to forestry, and further experimental work is required to identify suitable environmental drivers and their interplay with other potential factors such as the local predator community. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

New England Cod Collapse and the Climate.

PubMed

Meng, Kyle C; Oremus, Kimberly L; Gaines, Steven D

2016-01-01

To improve fishery management, there is an increasing need to understand the long-term consequences of natural and anthropogenic climate variability for ecological systems. New England's iconic cod populations have been in decline for several decades and have recently reached unprecedented lows. We find that 17% of the overall decline in Gulf of Maine cod biomass since 1980 can be attributed to positive phases of the North Atlantic Oscillation (NAO). This is a consequence of three results: i) a 1-unit increase in the NAO winter index is associated with a 17% decrease in the spring biomass of age-1 cod the following year; ii) this NAO-driven decrease persists as the affected cohort matures; iii) fishing practices appear to exacerbate NAO's direct biological effect such that, since 1913, a 1-unit increase in the NAO index lowers subsequent cod catch for up to 19 years. The Georges Bank cod stock displays similar patterns. Because we statistically detect a delay between the NAO and subsequent declines in adult biomass, our findings imply that observed current NAO conditions can be used in stock forecasts, providing lead time for adaptive policy. More broadly, our approach can inform forecasting efforts for other fish populations strongly affected by natural and anthropogenic climatic variation.

New England Cod Collapse and the Climate

PubMed Central

Meng, Kyle C.; Oremus, Kimberly L.; Gaines, Steven D.

2016-01-01

To improve fishery management, there is an increasing need to understand the long-term consequences of natural and anthropogenic climate variability for ecological systems. New England’s iconic cod populations have been in decline for several decades and have recently reached unprecedented lows. We find that 17% of the overall decline in Gulf of Maine cod biomass since 1980 can be attributed to positive phases of the North Atlantic Oscillation (NAO). This is a consequence of three results: i) a 1-unit increase in the NAO winter index is associated with a 17% decrease in the spring biomass of age-1 cod the following year; ii) this NAO-driven decrease persists as the affected cohort matures; iii) fishing practices appear to exacerbate NAO’s direct biological effect such that, since 1913, a 1-unit increase in the NAO index lowers subsequent cod catch for up to 19 years. The Georges Bank cod stock displays similar patterns. Because we statistically detect a delay between the NAO and subsequent declines in adult biomass, our findings imply that observed current NAO conditions can be used in stock forecasts, providing lead time for adaptive policy. More broadly, our approach can inform forecasting efforts for other fish populations strongly affected by natural and anthropogenic climatic variation. PMID:27463967

Design space exploration for early identification of yield limiting patterns

NASA Astrophysics Data System (ADS)

Li, Helen; Zou, Elain; Lee, Robben; Hong, Sid; Liu, Square; Wang, JinYan; Du, Chunshan; Zhang, Recco; Madkour, Kareem; Ali, Hussein; Hsu, Danny; Kabeel, Aliaa; ElManhawy, Wael; Kwan, Joe

2016-03-01

In order to resolve the causality dilemma of which comes first, accurate design rules or real designs, this paper presents a flow for exploration of the layout design space to early identify problematic patterns that will negatively affect the yield. A new random layout generating method called Layout Schema Generator (LSG) is reported in this paper, this method generates realistic design-like layouts without any design rule violation. Lithography simulation is then used on the generated layout to discover the potentially problematic patterns (hotspots). These hotspot patterns are further explored by randomly inducing feature and context variations to these identified hotspots through a flow called Hotspot variation Flow (HSV). Simulation is then performed on these expanded set of layout clips to further identify more problematic patterns. These patterns are then classified into design forbidden patterns that should be included in the design rule checker and legal patterns that need better handling in the RET recipes and processes.

Low worldwide genetic diversity in the killer whale (Orcinus orca): implications for demographic history.

PubMed Central

Hoelzel, A Rus; Natoli, Ada; Dahlheim, Marilyn E; Olavarria, Carlos; Baird, Robin W; Black, Nancy A

2002-01-01

A low level of genetic variation in mammalian populations where the census population size is relatively large has been attributed to various factors, such as a naturally small effective population size, historical bottlenecks and social behaviour. The killer whale (Orcinus orca) is an abundant, highly social species with reduced genetic variation. We find no consistent geographical pattern of global diversity and no mtDNA variation within some regional populations. The regional lack of variation is likely to be due to the strict matrilineal expansion of local populations. The worldwide pattern and paucity of diversity may indicate a historical bottleneck as an additional factor. PMID:12137576

Climatic suitability, isolation by distance and river resistance explain genetic variation in a Brazilian whiptail lizard.

PubMed

Oliveira, Eliana Faria; Martinez, Pablo Ariel; São-Pedro, Vinícius Avelar; Gehara, Marcelo; Burbrink, Frank Thomas; Mesquita, Daniel Oliveira; Garda, Adrian Antonio; Colli, Guarino Rinaldi; Costa, Gabriel Correa

2018-03-01

Spatial patterns of genetic variation can help understand how environmental factors either permit or restrict gene flow and create opportunities for regional adaptations. Organisms from harsh environments such as the Brazilian semiarid Caatinga biome may reveal how severe climate conditions may affect patterns of genetic variation. Herein we combine information from mitochondrial DNA with physical and environmental features to study the association between different aspects of the Caatinga landscape and spatial genetic variation in the whiptail lizard Ameivula ocellifera. We investigated which of the climatic, environmental, geographical and/or historical components best predict: (1) the spatial distribution of genetic diversity, and (2) the genetic differentiation among populations. We found that genetic variation in A. ocellifera has been influenced mainly by temperature variability, which modulates connectivity among populations. Past climate conditions were important for shaping current genetic diversity, suggesting a time lag in genetic responses. Population structure in A. ocellifera was best explained by both isolation by distance and isolation by resistance (main rivers). Our findings indicate that both physical and climatic features are important for explaining the observed patterns of genetic variation across the xeric Caatinga biome.

High morphological variation of vestibular system accompanies slow and infrequent locomotion in three-toed sloths

PubMed Central

Billet, Guillaume; Hautier, Lionel; Asher, Robert J.; Schwarz, Cathrin; Crumpton, Nick; Martin, Thomas; Ruf, Irina

2012-01-01

The semicircular canals (SCs), part of the vestibular apparatus of the inner ear, are directly involved in the detection of angular motion of the head for maintaining balance, and exhibit adaptive patterns for locomotor behaviour. Consequently, they are generally believed to show low levels of intraspecific morphological variation, but few studies have investigated this assumption. On the basis of high-resolution computed tomography, we present here, to our knowledge, the first comprehensive study of the pattern of variation of the inner ear with a focus on Xenarthra. Our study demonstrates that extant three-toed sloths show a high level of morphological variation of the bony labyrinth of the inner ear. Especially, the variation in shape, relative size and angles of their SCs greatly differ from those of other, faster-moving taxa within Xenarthra and Placentalia in general. The unique pattern of variation in three-toed sloths suggests that a release of selection and/or constraints on their organ of balance is associated with the observed wide range of phenotypes. This release is coincident with their slow and infrequent locomotion and may be related, among other possible factors, to a reduced functional demand for a precise sensitivity to movement. PMID:22859594

Genetic diversity and mating system of Copaifera langsdorffii (Leguminosae/Caesalpinioideae).

PubMed

Gonela, A; Sebbenn, A M; Soriani, H H; Mestriner, M A; Martinez, C A; Alzate-Marin, A L

2013-02-27

Copaifera langsdorffii, locally known as copaíba, is a valuable tropical tree with medicinal properties of its oil. We studied the genetic variation, genetic structure, and the mating system of trees in stands of C. langsdorffii (Leguminosae/Caesalpinioideae) located in an extensive area between the Pardo and Mogi-Guaçu basins in São Paulo State, Brazil, and their offspring, conserved in an ex situ germplasm bank at the University of São Paulo in Ribeirão Preto, SP, Brazil, using six microsatellite loci. Leaves were collected from 80 seed trees and from 259 offspring and their DNA extracted. A total of 140 and 175 alleles were found in the seed trees and their offspring, respectively. Low genetic differentiation was observed between stands, indicating intense gene flow due to efficient pollen dispersion vectors. An estimation of the outcrossing rate showed that these stands are outcrossed (tm = 0.98, P > 0.05). The mean variance of the effective population size of each family in two of the stands was 3.69 and 3.43, while the total effective population size retained in the germplasm bank was between 81 and 96. The paternity correlation was low, ranging from 0.052 to 0.148, demonstrating that the families implanted in this germplasm bank are composed predominantly of half-sibs.

Holocene millennial to centennial scale carbonate cycles (leeward margin, Great Bahama Bank)

NASA Astrophysics Data System (ADS)

Roth, S.; Reijmer, J. J. G.

2003-04-01

The main research topic of this project is the evaluation of Holocene to Recent climatic variability and the impact on shallow-water sediment production of carbonate platforms. A 38m long sediment core (MD992201) was analyzed, obtained from 290m water depth on the leeward margin of Great Bahama Bank. Fourteen Accelerator Mass Spectrometry (AMS) dates determined a core bottom age of 7,230 years BP and permitted the construction of a precise time frame. With a sampling interval of 5cm, a decadal time resolution could be achieved. Sedimentation rates varied between 3 to 14m/kyr. Carbonate content ranges from 96 to almost 100wt%, most of which is aragonite (83-92wt%). High Magnesium Calcite (HMC) makes up the second major fraction with 2-9wt%, while Low Magnesium Calcite occurs with minor percentages (0.5-4wt%). Singular Spectrum Analysis (SSA) of the aragonitic carbonate phase showed two different trends and two primary oscillatory signals. Aragonite production on Great Bahama Bank started at 7,230yr BP when the Holocene sea-level rise flooded the shallow platform top. The first eigenvector captures this long-term trend extending over the entire Mid to Late Holocene succession displaying the Holocene sea-level fluctuations. The second trend indicates millennial scale variations, which can be attributed to a combination of geomagnetic shielding and solar parameters. The two quasi-periodic signals show wavelengths of 400-600 years and approx. 210 years. These oscillations are interpreted in terms of instabilities of the thermohaline circulation and solar parameters, respectively. The oscillatory aragonite signals and oxygen isotope derived temperatures (planktonic foraminifers) agree with northern hemisphere temperature changes (e.g. Medieval Warm Period and Little Ice Age) and the delta-14C record of tree rings (e.g. Oort to Dalton solar minima). This study shows that carbonate platform systems not only respond to sea-level variations but also are precise recorders of short-term climate changes.

Natural habitats matter: Determinants of spatial pattern in the composition of animal assemblages of the Czech Republic

NASA Astrophysics Data System (ADS)

Divíšek, Jan; Zelený, David; Culek, Martin; Št'astný, Karel

2014-08-01

Studies that explore species-environment relationships at a broad scale are usually limited by the availability of sufficient habitat description, which is often too coarse to differentiate natural habitat patches. Therefore, it is not well understood how the distribution of natural habitats affects broad-scale patterns in the distribution of animal species. In this study, we evaluate the role of field-mapped natural habitats, land-cover types derived from remote sensing and climate on the composition of assemblages of five distinct animal groups, namely non-volant mammals, birds, reptiles, amphibians and butterflies native to the Czech Republic. First, we used variation partitioning based on redundancy analysis to evaluate the extent to which the environmental variables and their spatial structure might underlie the observed spatial patterns in the composition of animal assemblages. Second, we partitioned variations explained by climate, natural habitats and land-cover to compare their relative importance. Finally, we tested the independent effects of each variable in order to evaluate the significance of their contributions to the environmental model. Our results showed that spatial patterns in the composition of assemblages of almost all the considered animal groups may be ascribed mostly to variations in the environment. Although the shared effects of climatic variables, natural habitats and land-cover types explained the largest proportion of variation in each animal group, the variation explained purely by natural habitats was always higher than the variation explained purely by climate or land-cover. We conclude that most spatial variation in the composition of assemblages of almost all animal groups probably arises from biological processes operating within a spatially structured environment and suggest that natural habitats are important to explain observed patterns because they often perform better than habitat descriptions based on remote sensing. This underlines the value of using appropriate habitat data, for which high-resolution and large-area field-mapping projects are necessary.

Intraspecific karyotypic polymorphism is highly concordant with allozyme variation in Lysimachia mauritiana (Primulaceae: Myrsinoideae) in Taiwan: implications for the colonization history and dispersal patterns of coastal plants

PubMed Central

Kono, Yoshiko; Chung, Kuo-Fang; Chen, Chih-Hui; Hoshi, Yoshikazu; Setoguchi, Hiroaki; Chou, Chang-Hung; Oginuma, Kazuo; Peng, Ching-I

2012-01-01

Background and Aims Investigating intraspecific karyotypic and genetic variations jointly can provide unique insights into how historical, ecological and cytogenetic factors influence microevolution. A coastal herb, Lysimachia mauritiana, exhibits extensive karyotypic polymorphism and displays a complex cytogeographic pattern across the Ryukyus. To explore whether a similar degree of chromosomal variation exists south of the Ryukyus, and in an attempt to ascertain the mechanisms that may have generated the patterns, comprehensive sampling was conducted in Taiwan. Methods Karyotypes were analysed at mitotic metaphase for 550 individuals from 42 populations throughout Taiwan Proper and its adjacent islands. In addition, genetic variation was estimated using 12 allozymes (21 loci) of 314 individuals sampled from 12 localities. Key Results Four chromosome numbers and eight cytotypes, including four endemic cytotypes, were detected. Cytotype distributions were highly structured geographically, with single cytotypes present in most populations and four major cytotypes dominating the north, east and south of Taiwan and the Penghu Archipelago. Allozyme variation was very low and F-statistics indicated an extremely high level of population differentiation, implying limited gene flow among populations. Cluster analysis of allozyme variation uncovered four geographic groups, each corresponding perfectly to the four dominant cytotypes. The geographic structure of cytotype distribution and allozyme variation probably resulted from severe genetic drift triggered by genetic bottlenecks, suggesting that Taiwanese populations were likely to be derived from four independent founder events. In the few localities with multiple cytotypes, cytogeographic patterns and inferences of chromosomal evolution revealed a trend of northward dispersal, consistent with the course of the Kuroshio Current that has been influential in shaping the coastal biota of the region. Conclusions The data elucidate the patterns of colonization and the effects of the Kuroshio Current on the distribution of L. mauritiana in Taiwan. These inferences are highly relevant to other coastal plant species in the region and will stimulate further studies. PMID:23022678

Properties of High-Temperature Ceramics and Cermets. Elasticity and Density at Room Temperature

DTIC Science & Technology

1958-01-01

in the field of jet, has been established. This bank contains samples rocket, and atomic-powered heat engines have from the leading manufacturers as...mlaterials were of Laterial, were supplied by the manufacturer . resuilt inl products comparable varia- ’he different groups were either fabricated at. of...coefficient of variation actually set and lyzing the data that are already available to the groups of specimens having such a coefficient of manufacturer

Approximations of Thermoelastic and Viscoelastic Control Systems

DTIC Science & Technology

1990-06-01

parabolic partial differential equations. The development of computational algorithms for designing controllers for such systems is an Immenselv complex...hereditary differential system on Rr , then approximate the "’historv" or -’memory- term (i.e.. the integral term in i.S)). In this paper we will use a... variation introduced by Fabiano and Ito ([FI]) of the averaging scheme considered by Banks and Burns ([BB]) for the second stage. The idea of the "’AVE

Polymorphisms at the innate immune receptor TLR2 are associated with Borrelia infection in a wild rodent population

PubMed Central

Tschirren, Barbara; Andersson, Martin; Scherman, Kristin; Westerdahl, Helena; Mittl, Peer R. E.; Råberg, Lars

2013-01-01

The discovery of the key role of Toll-like receptors (TLRs) in initiating innate immune responses and modulating adaptive immunity has revolutionized our understanding of vertebrate defence against pathogens. Yet, despite their central role in pathogen recognition and defence initiation, there is little information on how variation in TLRs influences disease susceptibility in natural populations. Here, we assessed the extent of naturally occurring polymorphisms at TLR2 in wild bank voles (Myodes glareolus) and tested for associations between TLR2 variants and infection with Borrelia afzelii, a common tick-transmitted pathogen in rodents and one of the causative agents of human Lyme disease. Bank voles in our population had 15 different TLR2 haplotypes (10 different haplotypes at the amino acid level), which grouped in three well-separated clusters. In a large-scale capture–mark–recapture study, we show that voles carrying TLR2 haplotypes of one particular cluster (TLR2c2) were almost three times less likely to be Borrelia infected than animals carrying other haplotypes. Moreover, neutrality tests suggested that TLR2 has been under positive selection. This is, to our knowledge, the first demonstration of an association between TLR polymorphism and parasitism in wildlife, and a striking example that genetic variation at innate immune receptors can have a large impact on host resistance. PMID:23554395

Polymorphisms at the innate immune receptor TLR2 are associated with Borrelia infection in a wild rodent population.

PubMed

Tschirren, Barbara; Andersson, Martin; Scherman, Kristin; Westerdahl, Helena; Mittl, Peer R E; Råberg, Lars

2013-05-22

The discovery of the key role of Toll-like receptors (TLRs) in initiating innate immune responses and modulating adaptive immunity has revolutionized our understanding of vertebrate defence against pathogens. Yet, despite their central role in pathogen recognition and defence initiation, there is little information on how variation in TLRs influences disease susceptibility in natural populations. Here, we assessed the extent of naturally occurring polymorphisms at TLR2 in wild bank voles (Myodes glareolus) and tested for associations between TLR2 variants and infection with Borrelia afzelii, a common tick-transmitted pathogen in rodents and one of the causative agents of human Lyme disease. Bank voles in our population had 15 different TLR2 haplotypes (10 different haplotypes at the amino acid level), which grouped in three well-separated clusters. In a large-scale capture-mark-recapture study, we show that voles carrying TLR2 haplotypes of one particular cluster (TLR2c2) were almost three times less likely to be Borrelia infected than animals carrying other haplotypes. Moreover, neutrality tests suggested that TLR2 has been under positive selection. This is, to our knowledge, the first demonstration of an association between TLR polymorphism and parasitism in wildlife, and a striking example that genetic variation at innate immune receptors can have a large impact on host resistance.

Activity and growth efficiency of heterotrophic bacteria in a salt marsh (Ria de Aveiro, Portugal).

PubMed

Cunha, M A; Pedro, R; Almeida, M A; Silva, M H

2005-01-01

Bacterial utilization of monomers is recognized as an important step in the biogeochemical cycling of organic matter. In this study we have compared the heterotrophic activity of bacterial communities from different micro-habitats within a salt marsh environment (Ria de Aveiro, Portugal) in order to establish spatial patterns of bacterial abundance, monomer turnover rates (Tr) and bacterial growth efficiency (BGE). Differences in bacterial abundance and activity could be found between distinct plant rhizospheres. BGE tended to be lower at Halimione portulacoides banks, when compared to Sarcocornia perennis subsp. perennis banks which, on the contrary, showed the highest bacterial densities. Experiments of amendment of natural samples with organic and inorganic supplements indicated that salt marsh bacteria are not strongly regulated by salinity but the increased availability of labile organic matter causes a significant metabolic shift towards mineralization.

Taxonomic evaluation of selected Ganoderma species and database sequence validation

PubMed Central

Jargalmaa, Suldbold; Eimes, John A.; Park, Myung Soo; Park, Jae Young; Oh, Seung-Yoon

2017-01-01

Species in the genus Ganoderma include several ecologically important and pathogenic fungal species whose medicinal and economic value is substantial. Due to the highly similar morphological features within the Ganoderma, identification of species has relied heavily on DNA sequencing using BLAST searches, which are only reliable if the GenBank submissions are accurately labeled. In this study, we examined 113 specimens collected from 1969 to 2016 from various regions in Korea using morphological features and multigene analysis (internal transcribed spacer, translation elongation factor 1-α, and the second largest subunit of RNA polymerase II). These specimens were identified as four Ganoderma species: G. sichuanense, G. cf. adspersum, G. cf. applanatum, and G. cf. gibbosum. With the exception of G. sichuanense, these species were difficult to distinguish based solely on morphological features. However, phylogenetic analysis at three different loci yielded concordant phylogenetic information, and supported the four species distinctions with high bootstrap support. A survey of over 600 Ganoderma sequences available on GenBank revealed that 65% of sequences were either misidentified or ambiguously labeled. Here, we suggest corrected annotations for GenBank sequences based on our phylogenetic validation and provide updated global distribution patterns for these Ganoderma species. PMID:28761785

LES Modeling with Experimental Validation of a Compound Channel having Converging Floodplain

NASA Astrophysics Data System (ADS)

Mohanta, Abinash; Patra, K. C.

2018-04-01

Computational fluid dynamics (CFD) is often used to predict flow structures in developing areas of a flow field for the determination of velocity field, pressure, shear stresses, effect of turbulence and others. A two phase three-dimensional CFD model along with the large eddy simulation (LES) model is used to solve the turbulence equation. This study aims to validate CFD simulations of free surface flow or open channel flow by using volume of fluid method by comparing the data observed in hydraulics laboratory of the National Institute of Technology, Rourkela. The finite volume method with a dynamic sub grid scale was carried out for a constant aspect ratio and convergence condition. The results show that the secondary flow and centrifugal force influence flow pattern and show good agreement with experimental data. Within this paper over-bank flows have been numerically simulated using LES in order to predict accurate open channel flow behavior. The LES results are shown to accurately predict the flow features, specifically the distribution of secondary circulations both for in-bank channels as well as over-bank channels at varying depth and width ratios in symmetrically converging flood plain compound sections.

A novel land surface-hydrologic-sediment dynamics model for stream corridor conservation assessment and its first application

NASA Astrophysics Data System (ADS)

Smithgall, K.; Shen, C.; Langendoen, E. J.; Johnson, P. A.

2015-12-01

Nationally and in the Chesapeake Bay (CB), Stream Corridor restoration costs unsustainable amount of public resources, but decisions are often made with inadequate knowledge of regional-scale system behavior. Bank erosion is a significant issue relevant to sediment and nutrient pollution, aquatic and riparian habitat and stream health. Existing modeling effort either focuses only on reach-scale responses or overly simplifies the descriptions for bank failure mechanics. In this work we present a novel regional-scale processes model integrating hydrology, vegetation dynamics, hydraulics, bank mechanics and sediment transport, based on a coupling between Community Land Model, Process-based Adaptive Watershed Simulator and CONservational Channel Evolution and Pollutant Transport System (CLM + PAWS + CONCEPTS, CPC). We illustrate the feasibility of this modeling platform in a Valley and Ridge basin in Pennsylvania, USA, with channel geometry data collected in 2004 and 2014. The simulations are able to reproduce essential pattern of the observed trends. We study the causes of the noticeable evolution of a relocated channel and the hydrologic controls. Bridging processes on multiple scales, the CPC model creates a new, integrated system that may serve as a confluence point for inter-disciplinary research.

Antibodies against Pasteurella multocida in snow geese in the western arctic

USGS Publications Warehouse

Samuel, M.D.; Shadduck, D.J.; Goldberg, Diana R.; Baranyuk, V.; Sileo, L.; Price, J.I.

1999-01-01

To determine if lesser snow geese (Chen caerulescens caerulescens) are a potential reservoir for the Pasteurella multocida bacterium that causes avian cholera, serum samples and/or pharyngeal swabs were collected from > 3,400 adult geese breeding on Wrangel Island (Russia) and Banks Island (Canada) during 1993-1996. Pharyngeal swab sampling rarely (> 0.1%) detected birds that were exposed to P. multocida in these populations. Geese with serum antibody levels indicating recent infection with P. multocida were found at both breeding colonies. Prevalence of seropositive birds was 3.5% at Wrangel Island, an area that has no recorded history of avian cholera epizootics. Prevalence of seropositive birds was 2.8% at Banks Island in 1994, but increased to 8.2% during 1995 and 1996 when an estimated 40,000-60,000 snow geese were infected. Approximately 50% of the infected birds died during the epizootic and a portion of the surviving birds may have become carriers of the disease. This pattern of prevalence indicated that enzootic levels of infection with P. multocida occurred at both breeding colonies. When no avian cholera epizootics occurred (Wrangel Island, Banks Island in 1994), female snow geese (4.7%) had higher antibody prevalence than males (2.0%).

Geographic variation in body size and its relationship with environmental gradients in the Oriental Garden Lizard, Calotes versicolor.

PubMed

Wei, Xiaomei; Yan, Linmiao; Zhao, Chengjian; Zhang, Yueyun; Xu, Yongli; Cai, Bo; Jiang, Ni; Huang, Yong

2018-05-01

Patterns of geographic variation in body size are predicted to evolve as adaptations to local environmental gradients. However, many of these clinal patterns in body size, such as Bergmann's rule, are controversial and require further investigation into ectotherms such as reptiles on a regional scale. To examine the environmental variables (temperature, precipitation, topography and primary productivity) that shaped patterns of geographic variation in body size in the reptile Calotes versicolor , we sampled 180 adult specimens (91 males and 89 females) at 40 locations across the species range in China. The MANOVA results suggest significant sexual size dimorphism in C. versicolor ( F 23,124  = 11.32, p  < .001). Our results showed that C. versicolor failed to fit the Bergmann's rule. We found that the most important predictors of variation in body size of C. versicolor differed for males and females, but mechanisms related to heat balance and water availability hypotheses were involved in both sexes. Temperature seasonality, precipitation of the driest month, precipitation seasonality, and precipitation of the driest quarter were the most important predictors of variation in body size in males, whereas mean precipitation of the warmest quarter, mean temperature of the wettest quarter, precipitation seasonality, and precipitation of the wettest month were most important for body size variation in females. The discrepancy between patterns of association between the sexes suggested that different selection pressures may be acting in males and females.

Individual variation in prey selection by sea otters: Patterns, causes and implications

USGS Publications Warehouse

Estes, J.A.; Riedman, M.L.; Staedler, M.M.; Tinker, M.T.; Lyon, B.E.

2003-01-01

1. Longitudinal records of prey selection by 10 adult female sea otters on the Monterey Peninsula, California, from 1983 to 1990 demonstrate extreme inter-individual variation in diet. Variation in prey availability cannot explain these differences as the data were obtained from a common spatial-temporal area. 2. Individual dietary patterns persisted throughout our study, thus indicating that they are life-long characteristics. 3. Individual dietary patterns in sea otters appear to be transmitted along matrilines, probably by way of learning during the period of mother-young association. 4. Efficient utilization of different prey types probably requires radically different sensory/motor skills, each of which is difficult to acquire and all of which may exceed the learning and performance capacities of any single individual. This would explain the absence of generalists and inertia against switching, but not the existence of alternative specialists. 5. Such individual variation might arise in a constant environment from frequency-dependent effects, whereby the relative benefit of a given prey specialization depends on the number of other individuals utilizing that prey. Additionally, many of the sea otter's prey fluctuate substantially in abundance through time. This temporal variation, in conjunction with matrilineal transmission of foraging skills, may act to mediate the temporal dynamics of prey specializations. 6. Regardless of the exact cause, such extreme individual variation in diet has broad ramifications for population and community ecology. 7. The published literature indicates that similar patterns occur in many other species.

On Identifiability of Bias-Type Actuator-Sensor Faults in Multiple-Model-Based Fault Detection and Identification

NASA Technical Reports Server (NTRS)

Joshi, Suresh M.

2012-01-01

This paper explores a class of multiple-model-based fault detection and identification (FDI) methods for bias-type faults in actuators and sensors. These methods employ banks of Kalman-Bucy filters to detect the faults, determine the fault pattern, and estimate the fault values, wherein each Kalman-Bucy filter is tuned to a different failure pattern. Necessary and sufficient conditions are presented for identifiability of actuator faults, sensor faults, and simultaneous actuator and sensor faults. It is shown that FDI of simultaneous actuator and sensor faults is not possible using these methods when all sensors have biases.

Patterns of Genetic Variation in Woody Plant Species in the Missouri Ozark Forest Ecosystem Project

Treesearch

Victoria L. Sork; Anthony Koop; Marie Ann de la Fuente; Paul Foster; Jay Raveill

1997-01-01

We quantified current patterns of genetic variation of three woody plant species—Carya tomentosa (Juglandaceae), Quercus alba (Fagaceae), and Sassafras albidum (Lauraceae)—distributed throughout the nine Missouri Ozark Forest Ecosystem Project (MOFEP) study sites and evaluated the data in light of the MOFEP...

Genetic variation patterns of American chestnut populations at EST-SSRs

Treesearch

Oliver Gailing; C. Dana Nelson

2017-01-01

The objective of this study is to analyze patterns of genetic variation at genic expressed sequence tag - simple sequence repeats (EST-SSRs) and at chloroplast DNA markers in populations of American chestnut (Castanea dentata Borkh.) to assist in conservation and breeding efforts. Allelic diversity at EST-SSRs decreased significantly from southwest to northeast along...

Variation in motor output and motor performance in a centrally generated motor pattern

PubMed Central

Norris, Brian J.; Doloc-Mihu, Anca; Calabrese, Ronald L.

2014-01-01

Central pattern generators (CPGs) produce motor patterns that ultimately drive motor outputs. We studied how functional motor performance is achieved, specifically, whether the variation seen in motor patterns is reflected in motor performance and whether fictive motor patterns differ from those in vivo. We used the leech heartbeat system in which a bilaterally symmetrical CPG coordinates segmental heart motor neurons and two segmented heart tubes into two mutually exclusive coordination modes: rear-to-front peristaltic on one side and nearly synchronous on the other, with regular side-to-side switches. We assessed individual variability of the motor pattern and the beat pattern in vivo. To quantify the beat pattern we imaged intact adults. To quantify the phase relations between motor neurons and heart constrictions we recorded extracellularly from two heart motor neurons and movement from the corresponding heart segments in minimally dissected leeches. Variation in the motor pattern was reflected in motor performance only in the peristaltic mode, where larger intersegmental phase differences in the motor neurons resulted in larger phase differences between heart constrictions. Fictive motor patterns differed from those in vivo only in the synchronous mode, where intersegmental phase differences in vivo had a larger front-to-rear bias and were more constrained. Additionally, load-influenced constriction timing might explain the amplification of the phase differences between heart segments in the peristaltic mode and the higher variability in motor output due to body shape assumed in this soft-bodied animal. The motor pattern determines the beat pattern, peristaltic or synchronous, but heart mechanics influence the phase relations achieved. PMID:24717348

Form drag in rivers due to small-scale natural topographic features: 1. Regular sequences

USGS Publications Warehouse

Kean, J.W.; Smith, J.D.

2006-01-01

Small-scale topographic features are commonly found on the boundaries of natural rivers, streams, and floodplains. A simple method for determining the form drag on these features is presented, and the results of this model are compared to laboratory measurements. The roughness elements are modeled as Gaussian-shaped features defined in terms of three parameters: a protrusion height, H; a streamwise length scale, ??; and a spacing between crests, ??. This shape is shown to be a good approximation to a wide variety of natural topographic bank features. The form drag on an individual roughness element embedded in a series of identical elements is determined using the drag coefficient of the individual element and a reference velocity that includes the effects of roughness elements further upstream. In addition to calculating the drag on each element, the model determines the spatially averaged total stress, skin friction stress, and roughness height of the boundary. The effects of bank roughness on patterns of velocity and boundary shear stress are determined by combining the form drag model with a channel flow model. The combined model shows that drag on small-scale topographic features substantially alters the near-bank flow field. These methods can be used to improve predictions of flow resistance in rivers and to form the basis for fully predictive (no empirically adjusted parameters) channel flow models. They also provide a foundation for calculating the near-bank boundary shear stress fields necessary for determining rates of sediment transport and lateral erosion.

Time-specific patterns of nest survival for ducks and passerines breeding in North Dakota

USGS Publications Warehouse

Shaffer, Terry L.; Grant, Todd A.

2012-01-01

In many bird species, survival can vary with the age of the nest, with the date a nest was initiated, or among years within the same nesting area. A literature review showed that patterns of survival vary in relation to nest age and date and are often contradictory. Inconsistencies could be a result of temporal variation in the environment or life-history differences among species. We examined patterns of nest survival in relation to nest age, date, and year for several duck and passerine species nesting at a single location in North Dakota during 1998–2003. We predicted that if environment shaped nest survival patterns, then temporal patterns in survival might be similar among three species of upland nesting ducks, and also among three species of grassland passerines nesting at the same site. We expected that survival patterns would differ between ducks and passerines because of relatively disparate life histories and differences in predators that prey on their nests. Nest survival was rarely constant among years, seasonally, or with age of the nest for species that we studied. As predicted, the pattern of survival was similar among duck species, driven mainly by differences in nest survival associated with nest initiation date. The pattern of survival also was similar among passerine species, but nest survival was more influenced by nest age than by date. Our findings suggest that some but not all variation in temporal patterns of nest survival in grassland birds reported in the literature can be explained on the basis of temporal environmental variation. Because patterns of survival were dissimilar among ducks and passerines, it is likely that mechanisms such as predation or brood parasitism have variable influences on productivity of ducks and passerines nesting in the same area. Our results indicate that biologists and managers should not assume that temporal environmental variations, especially factors that affect nest survival, act similarly on all grassland birds.

Physical Forcing Mechanisms Controlling the Variability of Chlorophyll-a over the Royal-Charlotte and Abrolhos Banks—Eastern Brazilian Shelf

PubMed Central

Ghisolfi, Renato David; Pereira da Silva, Meyre; Thomaz dos Santos, Felipe; Servino, Ricardo Nogueira; Cirano, Mauro; Thompson, Fabiano Lopes

2015-01-01

The Abrolhos Bank is part of the so-called Eastern Brazilian Shelf and is an area of high ecological and economic importance. The bank supports the largest and richest coral reefs in the South Atlantic and the largest rhodolith bed in the world. The spatial and seasonal variation of phytoplankton concentration, however, and the dynamic processes controlling that variability have remained poorly known. The present study investigates the seasonal and spatial distributions of chlorophyll-a (Chl-a) and water conditions by analyzing nine years (2003–2011) of level-3 Moderate-resolution Imaging Spectroradiometer (MODIS) derived Chl-a, National Centers for Environmental Prediction (NCEP)/ETA model-derived winds, NCEP model-derived heat fluxes, thermohaline and velocity results from the Hybrid Circulation Ocean Model (HYCOM) 1/12o assimilated simulation. The results show that low/high concentrations occurred in austral spring-summer (wet season)/autumn-winter (dry season), with the highest values observed in the northern portion of the Abrolhos Bank. The typical meteorological and oceanographic conditions during austral summer favor the development of strong stratification. These conditions are 1) N-NE winds that favor an upwelling-type Ekman circulation; 2) coupling between the open ocean and the continental shelf through the western boundary current, which promotes cooler subsurface water to rise onto the shelf break; and 3) positive net heat flux. In contrast, the S-SE winds during autumn are in the opposite direction of the predominant current system over the Abrolhos Bank, thus reducing their speed and inducing an inverse shear. The warmer ocean and a somewhat cool and dry atmosphere promote the evaporative cooling of the surface layer. The above processes drive mixed layer cooling and deepening that reaches its maximum in winter. The blooming of phytoplankton in the Abrolhos Bank waters appears to be regulated by changes in the mixed layer depth, with Chl-a levels that start to increase during autumn and reach their peak in June-July. PMID:25700269

Genetic diversity and accession structure in European Cynara cardunculus collections

PubMed Central

Fernández, Juan A.; Sonnante, Gabriella; Egea-Gilabert, Catalina

2017-01-01

Understanding the distribution of genetic variations and accession structures is an important factor for managing genetic resources, but also for using proper germplasm in association map analyses and breeding programs. The globe artichoke is the fourth most important horticultural crop in Europe. Here, we report the results of a molecular analysis of a collection including globe artichoke and leafy cardoon germplasm present in the Italian, French and Spanish gene banks. The aims of this study were to: (i) assess the diversity present in European collections, (ii) determine the population structure, (iii) measure the genetic distance between accessions; (iv) cluster the accessions; (v) properly distinguish accessions present in the different national collections carrying the same name; and (vi) understand the diversity distribution in relation to the gene bank and the geographic origin of the germplasm. A total of 556 individuals grouped into 174 accessions of distinct typologies were analyzed by different types of molecular markers, i.e. dominant (ISSR and AFLP) and co-dominant (SSR). The data of the two crops (globe artichoke and leafy cardoon) were analyzed jointly and separately to compute, among other aims, the gene diversity, heterozygosity (He, Ho), fixation indexes, AMOVA, genetic distance and structure. The findings underline the huge diversity present in the analyzed material, and the existence of alleles that are able to discriminate among accessions. The accessions were clustered not only on the basis of their typology, but also on the basis of the gene bank they come from. Probably, the environmental conditions of the different field gene banks affected germplasm conservation. These outcomes will be useful in plant breeding to select accessions and to fingerprint varieties. Moreover, the results highlight the particular attention that should be paid to the method used to conserve the Cynara cardunculus germplasm and suggest to the preference of using accessions from different gene banks to run an association map. PMID:28570688

Visual area of the lateral suprasylvian gyrus (Clare—Bishop area) of the cat

PubMed Central

Hubel, David H.; Wiesel, Torsten N.

1969-01-01

On anatomical and physiological grounds a zone of cat cortex deep in the medial bank of the suprasylvian sulcus (the Clare—Bishop area) is known to receive strong visual projections both from the lateral geniculate body and area 17. We have mapped receptive fields of single cells in this area in eight cats. Active responses to visual stimuli were found over most of the medial bank of the suprasylvian sulcus extending to the depths and over to the lowest part of the lateral bank. The area is clearly topographically arranged. The first responsive cells, recorded over the lateral convexity and 2-3 mm down the medial bank, had receptive fields in the far periphery of the contralateral visual fields. The receptive fields tended to be large, but showed considerable variation in size and scatter in their positions. As the electrode advanced down the bank, fields of successively recorded cells gradually tended to move inwards, so that in the depths of the sulcus the inner borders of many of the fields reached the vertical mid line. Here the fields were smaller, though they still varied very much in size. Receptive fields were larger than in 17, 18, or 19, but otherwise were not obviously different from the complex and lower-order hypercomplex fields in those areas. No simple fields, or concentric fields of the retino-geniculate type, were seen. Cells with common receptive-field orientation were grouped together, but whether or not the grouping occurs in columns was not established. Most cells were driven independently by the two eyes. Fields in the two eyes seemed to be identical in organization. Cells dominated by the contralateral eye were much more common than ipsilaterally dominated ones, but when cells with parafoveal and peripheral fields were considered separately, the asymmetry was seen to apply mainly to cells with peripheral fields. PMID:5770897

Intraspecific ecomorphological variation: linear and geometric morphometrics reveal habitat-related patterns within Podarcis bocagei wall lizards.

PubMed

Kaliontzopoulou, Antigoni; Carretero, M A; Llorente, G A

2010-06-01

Morphological variation in relation to habitat is known to occur in several lizard groups. Comparative studies have linked morphology and habitat use, showing that locomotion is the principal mediator of this evolutionary relationship. Here, we investigate intraspecific ecomorphological variation in Podarcis bocagei by examining three habitat types, representing a variety between saxicolous and ground-dwelling habits. Our results indicate variation in absolute and relative limb length, but patterns are only partially concordant to biomechanical predictions. Whereas the femur and hind foot are longer in ground-dwelling lizards, confirming previous observations, the tibia and hind limb are relatively shorter, contradicting expectations. Additionally, head shape varies substantially between habitats, in line with a hypothesis of mechanical restrictions related to microhabitat and refuge use. Finally, we detect male-specific variation between habitats in total body size and head size, providing evidence for interactions between natural and sexual selection. Although performance and behaviour studies are necessary to definitely confirm the functional and evolutionary significance of the observed patterns, our study indicates that ecomorphological adaptations can arise in a very short evolutionary time in this group of lizards.

Comprehensive assessment of dam impacts on flow regimes with consideration of interannual variations

NASA Astrophysics Data System (ADS)

Zhang, Yongyong; Shao, Quanxi; Zhao, Tongtiegang

2017-09-01

Assessing the impact of human intervention on flow regimes is important in policy making and resource management. Previous impact assessments of dam regulation on flow regimes have focused on long-term average patterns, but interannual variations, which are important characteristics to be considered, have been ignored. In this study, the entire signatures of hydrograph variations of Miyun Reservoir in northern China were described by forty flow regime metrics that incorporate magnitude, variability and frequency, duration, timing, and rate of change for flow events based on a long-term synchronous observation series of inflow and outflow. Principal component analysis and cluster analysis were used to reduce the multidimensionality of the metrics and time and to determine impact patterns and their interannual shifts. Statistically significant driving factors of impact pattern variations were identified. We found that dam regulation resulted in four main impact classes on the flow regimes and that the regulated capacity was interannually attenuated from 1973 to 2010. The impact patterns alternated between the highly regulated class with extremely decreasing flow magnitude, slight variability, and extreme intermittency and the slightly regulated class with extremely increasing flow magnitude, slight variability, and extreme intermittency from 1973 to 1987 and then stabilized in the latter class from 1988 to 2001. After 2001, the pattern gradually changed from the moderately regulated class with moderately decreasing flow magnitude, extreme variability, and extreme intermittency to the slightly regulated class with slightly decreasing flow magnitude, slight variability, and no intermittency. Decreasing precipitation and increasing drought were the primary drivers for the interannual variations of the impact patterns, and inflow variability was the most significant factor affecting the patterns, followed by flow event frequency and duration, magnitude, and timing. This study shows that the use of interannual characteristics can help to gain more insight into the impact of dam regulation on flow regimes and will provide important information to scientifically guide the multi-purpose regulation of dams.

Ventilatory Patterning in a Mouse Model of Stroke

PubMed Central

Koo, Brian B; Strohl, Kingman P; Gillombardo, Carl B; Jacono, Frank J

2010-01-01

Cheyne-Stokes respiration (CSR) is a breathing pattern characterized by waxing and waning of breath volume and frequency, and is often recognized following stroke, when causal pathways are often obscure. We used an animal model to address the hypothesis that cerebral infarction is a mechanism for producing breathing instability. Fourteen male A/J mice underwent either stroke (n=7) or sham (n=7) procedure. Ventilation was measured using whole body plethysmography. Respiratory rate (RR), tidal volume (VT) and minute ventilation (Ve) mean values and coefficient of variation were computed for ventilation and oscillatory behavior. In addition, the ventilatory data were computationally fit to models to quantify autocorrelation, mutual information, sample entropy and a nonlinear complexity index. At the same time post procedure, stroke when compared to sham animal breathing consisted of a lower RR and autocorrelation, higher coefficient of variation for VT and higher coefficient of variation for Ve. Mutual information and the nonlinear complexity index were higher in breathing following stroke which also demonstrated a waxing/waning pattern. The absence of stroke in the sham animals was verified anatomically. We conclude that ventilatory pattern following cerebral infarction demonstrated increased variability with increased nonlinear patterning and a waxing/waning pattern, consistent with CSR. PMID:20472101

Seismo-Geochemical Variations in SW Taiwan: Multi-Parameter Automatic Gas Monitoring Results

NASA Astrophysics Data System (ADS)

Yang, T. F.; Fu, C.-C.; Walia, V.; Chen, C.-H.; Chyi, L. L.; Liu, T.-K.; Song, S.-R.; Lee, M.; Lin, C.-W.; Lin, C.-C.

2006-04-01

Gas variations of many mud volcanoes and hot springs distributed along the tectonic sutures in southwestern Taiwan are considered to be sensitive to the earthquake activity. Therefore, a multi-parameter automatic gas station was built on the bank of one of the largest mud-pools at an active fault zone of southwestern Taiwan, for continuous monitoring of CO2, CH4, N2 and H2O, the major constituents of its bubbling gases. During the year round monitoring from October 2001 to October 2002, the gas composition, especially, CH4 and CO2, of the mud pool showed significant variations. Taking the CO2/CH4 ratio as the main indicator, anomalous variations can be recognized from a few days to a few weeks before earthquakes and correlated well with those with a local magnitude >4.0 and local intensities >2. It is concluded that the gas composition in the area is sensitive to the local crustal stress/strain and is worthy to conduct real-time monitoring for the seismo-geochemical precursors.

Large-Scale Atmospheric Teleconnection Patterns Associated with the Interannual Variability of Heatwaves in East Asia and Its Decadal Changes

NASA Astrophysics Data System (ADS)

Choi, N.; Lee, M. I.; Lim, Y. K.; Kim, K. M.

2017-12-01

Heatwave is an extreme hot weather event which accompanies fatal damage to human health. The heatwave has a strong relationship with the large-scale atmospheric teleconnection patterns. In this study, we examine the spatial pattern of heatwave in East Asia by using the EOF analysis and the relationship between heatwave frequency and large-scale atmospheric teleconnection patterns. We also separate the time scale of heatwave frequency as the time scale longer than a decade and the interannual time scale. The long-term variation of heatwave frequency in East Asia shows a linkage with the sea surface temperature (SST) variability over the North Atlantic with a decadal time scale (a.k.a. the Atlantic Multidecadal Oscillation; AMO). On the other hands, the interannual variation of heatwave frequency is linked with the two dominant spatial patterns associated with the large-scale teleconnection patterns mimicking the Scandinavian teleconnection (SCAND-like) pattern and the circumglobal teleconnection (CGT-like) pattern, respectively. It is highlighted that the interannual variation of heatwave frequency in East Asia shows a remarkable change after mid-1990s. While the heatwave frequency was mainly associated with the CGT-like pattern before mid-1990s, the SCAND-like pattern becomes the most dominant one after mid-1990s, making the CGT-like pattern as the second. This study implies that the large-scale atmospheric teleconnection patterns play a key role in developing heatwave events in East Asia. This study further discusses possible mechanisms for the decadal change in the linkage between heatwave frequency and the large-scale teleconnection patterns in East Asia such as early melting of snow cover and/or weakening of East Asian jet stream due to global warming.

A tripolar pattern as an internal mode of the East Asian summer monsoon

NASA Astrophysics Data System (ADS)

Hirota, Nagio; Takahashi, Masaaki

2012-11-01

A tripolar anomaly pattern with centers located around the Philippines, China/Japan, and East Siberia dominantly appears in climate variations of the East Asian summer monsoon. In this study, we extracted this pattern as the first mode of a singular value decomposition (SVD1) over East Asia. The squared covariance fraction of SVD1 was 59 %, indicating that this pattern can be considered a dominant pattern of climate variations. Moreover, the results of numerical experiments suggested that the structure is also a dominant pattern of linear responses, even if external forcing is distributed homogeneously over the Northern Hemisphere. Thus, the tripolar pattern can be considered an internal mode that is characterized by the internal atmospheric processes. In this pattern, the moist processes strengthen the circulation anomalies, the dynamical energy conversion supplies energy to the anomalies, and the Rossby waves propagate northward in the lower troposphere and southeastward in the upper troposphere. These processes are favorable for the pattern to have large amplitude and to influence a large area.

High intralocus variability and interlocus recombination promote immunological diversity in a minimal major histocompatibility system.

PubMed

Wilson, Anthony B; Whittington, Camilla M; Bahr, Angela

2014-12-20

The genes of the major histocompatibility complex (MHC/MH) have attracted considerable scientific interest due to their exceptional levels of variability and important function as part of the adaptive immune system. Despite a large number of studies on MH class II diversity of both model and non-model organisms, most research has focused on patterns of genetic variability at individual loci, failing to capture the functional diversity of the biologically active dimeric molecule. Here, we take a systematic approach to the study of MH variation, analyzing patterns of genetic variation at MH class IIα and IIβ loci of the seahorse, which together form the immunologically active peptide binding cleft of the MH class II molecule. The seahorse carries a minimal class II system, consisting of single copies of both MH class IIα and IIβ, which are physically linked and inherited in a Mendelian fashion. Both genes are ubiquitously expressed and detectible in the brood pouch of male seahorses throughout pregnancy. Genetic variability of the two genes is high, dominated by non-synonymous variation concentrated in their peptide-binding regions. Coding variation outside these regions is negligible, a pattern thought to be driven by intra- and interlocus recombination. Despite the tight physical linkage of MH IIα and IIβ loci, recombination has produced novel composite alleles, increasing functional diversity at sites responsible for antigen recognition. Antigen recognition by the adaptive immune system of the seahorse is enhanced by high variability at both MH class IIα and IIβ loci. Strong positive selection on sites involved in pathogen recognition, coupled with high levels of intra- and interlocus recombination, produce a patchwork pattern of genetic variation driven by genetic hitchhiking. Studies focusing on variation at individual MH loci may unintentionally overlook an important component of ecologically relevant variation.

Passive acoustic tracking of singing humpback whales (Megaptera novaeangliae) on a northwest Atlantic feeding ground.

PubMed

Stanistreet, Joy E; Risch, Denise; Van Parijs, Sofie M

2013-01-01

Passive acoustic tracking provides an unobtrusive method of studying the movement of sound-producing animals in the marine environment where traditional tracking methods may be costly or infeasible. We used passive acoustic tracking to characterize the fine-scale movements of singing humpback whales (Megaptera novaeangliae) on a northwest Atlantic feeding ground. Male humpback whales produce complex songs, a phenomenon that is well documented in tropical regions during the winter breeding season, but also occurs at higher latitudes during other times of year. Acoustic recordings were made throughout 2009 using an array of autonomous recording units deployed in the Stellwagen Bank National Marine Sanctuary. Song was recorded during spring and fall, and individual singing whales were localized and tracked throughout the array using a correlation sum estimation method on the time-synchronized recordings. Tracks were constructed for forty-three song sessions, revealing a high level of variation in movement patterns in both the spring and fall seasons, ranging from slow meandering to faster directional movement. Tracks were 30 min to 8 h in duration, and singers traveled distances ranging from 0.9 to 20.1 km. Mean swimming speed was 2.06 km/h (SD 0.95). Patterns and rates of movement indicated that most singers were actively swimming. In one case, two singers were tracked simultaneously, revealing a potential acoustic interaction. Our results provide a first description of the movements of singers on a northwest Atlantic feeding ground, and demonstrate the utility of passive acoustic tracking for studying the fine-scale movements of cetaceans within the behavioral context of their calls. These methods have further applications for conservation and management purposes, particularly by enhancing our ability to estimate cetacean densities using passive acoustic monitoring.