The effects of oil pollution on Antarctic benthic diatom communities over 5 years.

PubMed

Polmear, R; Stark, J S; Roberts, D; McMinn, A

2015-01-15

Although considered pristine, Antarctica has not been impervious to hydrocarbon pollution. Antarctica's history is peppered with oil spills and numerous abandoned waste disposal sites. Both spill events and constant leakages contribute to previous and current sources of pollution into marine sediments. Here we compare the response of the benthic diatom communities over 5 years to exposure to a commonly used standard synthetic lubricant oil, an alternative lubricant marketed as more biodegradable, in comparison to a control treatment. Community composition varied significantly over time and between treatments with some high variability within contaminated treatments suggesting community stress. Both lubricants showed evidence of significant effects on community composition after 5 years even though total petroleum hydrocarbon reduction reached approximately 80% over this time period. It appears that even after 5 years toxicity remains high for both the standard and biodegradable lubricants revealing the temporal scale at which pollutants persist in Antarctica. Copyright © 2014 Elsevier Ltd. All rights reserved.

Response of benthic algae to environmental gradients in an agriculturally dominated landscape

USGS Publications Warehouse

Munn, M.D.; Black, R.W.; Gruber, S.J.

2002-01-01

Benthic algal communities were assessed in an agriculturally dominated landscape in the Central Columbia Plateau, Washington, to determine which environmental variables best explained species distributions, and whether algae species optima models were useful in predicting specific water-quality parameters. Land uses in the study area included forest, range, urban, and agriculture. Most of the streams in this region can be characterized as open-channel systems influenced by intensive dryland (nonirrigated) and irrigated agriculture. Algal communities in forested streams were dominated by blue-green algae, with communities in urban and range streams dominated by diatoms. The predominance of either blue-greens or diatoms in agricultural streams varied greatly depending on the specific site. Canonical correspondence analysis (CCA) indicated a strong gradient effect of several key environmental variables on benthic algal community composition. Conductivity and % agriculture were the dominant explanatory variables when all sites (n = 24) were included in the CCA; water velocity replaced conductivity when the CCA included only agricultural and urban sites. Other significant explanatory variables included dissolved inorganic nitrogen (DIN), orthophosphate (OP), discharge, and precipitation. Regression and calibration models accurately predicted conductivity based on benthic algal communities, with OP having slightly lower predictability. The model for DIN was poor, and therefore may be less useful in this system. Thirty-four algal taxa were identified as potential indicators of conductivity and nutrient conditions, with most indicators being diatoms except for the blue-greens Anabaenasp. and Lyngbya sp.

Purification and culture characteristics of 36 benthic marine diatoms isolated from the Solthörn tidal flat (Southern North Sea).

PubMed

Scholz, Bettina

2014-08-01

Marine benthic diatoms growing in biofilms on sediment surfaces generally occur associated with heterotrophic bacteria, whereas modern molecular techniques and analyses of species-specific physiology create a demand for axenic cultures. Numerous benthic diatoms were isolated from surface sediments during a monitoring of the Solthörn tidal flat (southern North Sea, Germany) from May 2008 to May 2009. Of these, around 50% could be purified from the accompanying heterotrophic bacteria using different antibiotics combined with physical separation methods (vortexing, ultrasound). Overall, seven different antibiotics were tested at different concentrations, and a best working protocol was developed. The axenic strains were stable on average for only around 15 months, indicating a symbiotic interaction between the benthic diatoms and the associated bacteria. While most short-term effects during the purification process were restricted to differences in growth rates among xenic and axenic diatom strains, long-term cultivation led to distinct changes in cell volumes and growth characteristics of the axenic strains. © 2014 Phycological Society of America.

ENERGY-BASED LAND USE PREDICTORS OF PROXIMAL FACTORS AND BENTHIC DIATOM COMPOSITION IN FLORIDA FRESHWATER MARSHES

EPA Science Inventory

The development of rigorous biological assessments is dependent upon well-constructed abscissa, and various methods, both subjective and objective, exist to measure expected impairment at both the landscape and local scale. A new, landscape-scale method has recently been offered...

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

PubMed Central

Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition are affected by the plastic type and habitat. Further, it reveals that already within two weeks biodegradable plastic shows signs of degradation in the benthic and pelagic habitat. PMID:26394047

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

PubMed

Eich, Andreas; Mildenberger, Tobias; Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition are affected by the plastic type and habitat. Further, it reveals that already within two weeks biodegradable plastic shows signs of degradation in the benthic and pelagic habitat.

Inorganic carbon availability in benthic diatom communities: photosynthesis and migration.

PubMed

Marques da Silva, Jorge; Cruz, Sónia; Cartaxana, Paulo

2017-09-05

Diatom-dominated microphytobenthos (MPB) is the main primary producer of many intertidal and shallow subtidal environments, being therefore of critical importance to estuarine and coastal food webs. Owing to tidal cycles, intertidal MPB diatoms are subjected to environmental conditions far more variable than the ones experienced by pelagic diatoms (e.g. light, temperature, salinity, desiccation and nutrient availability). Nevertheless, benthic diatoms evolved adaptation mechanisms to these harsh conditions, including the capacity to move within steep physical and chemical gradients, allowing them to perform photosynthesis efficiently. In this contribution, we will review present knowledge on the effects of dissolved inorganic carbon (DIC) availability on photosynthesis and productivity of diatom-dominated MPB. We present evidence of carbon limitation of photosynthesis in benthic diatom mats and highly productive MPB natural communities. Furthermore, we hypothesize that active vertical migration of epipelic motile diatoms could overcome local depletion of DIC in the photic layer, providing the cells alternately with light and inorganic carbon supply. The few available longer-term experiments on the effects of inorganic carbon enrichment on the productivity of diatom-dominated MPB have yielded inconsistent results. Therefore, further studies are needed to properly assess the response of MPB communities to increased CO 2 and ocean acidification related to climate change.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

How benthic diatoms within natural communities respond to eight common herbicides with different modes of action.

PubMed

Wood, Rebecca J; Mitrovic, Simon M; Lim, Richard P; Kefford, Ben J

2016-07-01

Herbicides are common pollutants of rivers in agricultural regions. These contaminants include various types of chemicals with different modes of toxic action. Herbicides can have toxic effects on freshwater benthic diatoms, the base of the aquatic food web. We examined the effects of (non-mixture) herbicide exposure to the health of diatoms for eight common herbicides with three different modes of action; the photosystem II (PSII) inhibitors: atrazine, simazine, hexazinone, tebuthiuron and diuron; two auxinic herbicides: MCPA and 2,4-D; and the EPSP synthase inhibitor: glyphosate. Benthic diatoms within riverine communities were exposed to each herbicide in rapid toxicity tests at concentrations of 50, 200 and 500μgL(-1). The most sensitive taxa were Gomphonema spp. and Encyonema gracilis. Navicula cryptotenella was the most tolerant to herbicide exposure. There was no significant effect of the different herbicide modes of action at the community level. Herbicide mode of action did not alter which taxa were most sensitive within the community and sensitivity rankings of the dominant diatom taxa were similar for each of the eight herbicides. The consistency of the results between herbicides suggests that freshwater benthic diatoms may be suitable in situ indicators for detecting the toxicity of herbicides with differing modes of action. Copyright © 2016 Elsevier B.V. All rights reserved.

Effects of pulp mill effluent on benthic assemblages in mesocosms along the Saint John River, Canada.

PubMed

Culp, Joseph M; Cash, Kevin J; Glozier, Nancy E; Brua, Robert B

2003-12-01

We used mesocosms to examine the impact of different concentrations of pulp mill effluent (PME) on structural and functional endpoints of a benthic assemblage in the Saint John River (NB, Canada) during 1999 and 2000. Previous studies on this effluent's effects produced conflicting results, with field surveys suggesting a pattern of mild nutrient enrichment, while laboratory toxicity tests linked effluent exposure to moderate contaminant effects. Experimental treatments included three concentrations of sulfite pulp mill effluent (0, 5, 10% v/v PME). Endpoints for the assessment included algal biomass and taxonomic composition, benthic invertebrate abundance and composition, and insect emergence. Low concentrations of PME increased periphyton biomass and caused changes in community structure within the diatom-dominated community. Pulp mill effluent addition had little effect on several structural endpoints measured for benthic invertebrates, including abundance and taxonomic richness, but significantly changed community composition. For both periphyton and benthic invertebrates, community composition endpoints were more sensitive indicators of PME exposure. Insect emergence was a highly relevant functional endpoint. When benthic and emerged insects were combined, total abundance increased with PME addition. Results from two trophic levels, which provided multiple lines of evidence, indicated that the main impact of these PME concentrations is nutrient enrichment rather than effluent toxicity. Our findings also suggest that benthic invertebrate and periphyton assemblages, algal biomass production, and insect emergence are sensitive response measures. Future studies may confirm this observation. The consideration of both functional and structural endpoints at different trophic levels can greatly improve our understanding the effects of discharges to rivers. Such an understanding could not have been obtained using standard assessment techniques and illustrates the value of mesocosms and the benthic community assemblage approach in environmental assessment.

Concentrations of selected heavy metals in benthic diatoms and sediment in the Westerschelde Estuary

DOE Office of Scientific and Technical Information (OSTI.GOV)

Absil, M.C.P.; Scheppingen, Y. van

1996-12-31

In recent years considerable data have been compiled on heavy metal levels in biota in marine and estuarine environments. With respect to the fauna, much information is available on accumulation and effects of heavy metals in birds, fish and benthic macrofauna. Accumulation of heavy metals in aquatic flora has been studied mostly in benthic macroalgae, in particular in relation to the use as a biological monitor. The response of planktonic algal species to heavy metals has been studied extensively in cultured populations. Also. heavy metal concentrations in natural plankton have been studied. As far as we know, very few datamore » are available on the concentrations of heavy metals in the lowest benthic trophic level, the benthic microflora. It is a major food supply for numerous intertidal species, so it is obvious that microflora might play an important role in the accumulation of contaminants through coastal food chains. The aim of this research was to adjust a recently developed collection technique for benthic diatoms so that it is suitable for large-scale field studies. The method was then used to assess the concentration of the heavy metals Cd, Cu, Pb and Zn in benthic diatoms and sediments along an estuarine gradient. 18 refs., 2 figs., 1 tab.« less

The effects of fine-scale substratum roughness on diatom community structure in estuarine biofilms.

PubMed

Sweat, L Holly; Johnson, Kevin B

2013-09-01

Benthic diatoms are a major component of biofilms that form on surfaces submerged in marine environments. Roughness of the underlying substratum affects the settlement of both diatoms and subsequent macrofouling colonizers. This study reports the effects of roughness on estuarine diatom communities established in situ in the Indian River Lagoon, FL, USA. Natural communities were established on acrylic panels with a range of surface roughnesses. Smoother substrata exhibited higher cell density, species richness, and diversity. Twenty-three of 58 species were found either exclusively or more abundantly on the smooth surfaces compared to one or both roughened treatments. The results suggest a greater ability of benthic diatoms to recruit and colonize smooth surfaces, which is probably explained by a higher degree of contact between the cells and the surface.

Diatom biostratigraphy and paleoecology of the type section of the Luisian Stage, central California

USGS Publications Warehouse

Baldauf, Jack G.; Barron, John A.

1982-01-01

Diatoms from the type section of the Luisian Stage in central California correlate with the lowermost part of the Denticulopsis lauta Zone through the lower part of subzone "a" of the Denticulopsis hustedtii-D. lauta Zone and are early Middle Miocene in age (about 6.0 to 14.0 Ma), Rocks assigned to the Luisian Stage by benthic foraminifers elsewhere in California exhibit little diachroneity in terms of diatom biostratigraphy, however, detailed studies of boundaries have not been done. Planktic diatoms dominate the assemblages, although an increase in benthic and tychopelagic diatoms in the overlying Hames Member of the Monterey Formation probably reflects shoaling. A cooling trend is suggested by diatom assemblages in the upper part of the section and is most marked near the top of the type Luisian. This cooling trend is supported by data elsewhere in the Pacific Basin as well as by both megafossil and microfossil studies in California. One hundred four diatom taxa are documented, and one new species, Coscinodiscus volutus Baldauf, is described.

Watershed Alteration Impacts to Benthic Diatom Assemblages in Streams

EPA Science Inventory

To examine the use of diatoms as indicators of urban impacts to streams, we identified relationships of diatom assemblages with water chemistry and land use for 160 sites in New England. The first axis of a nonmetric multidimensional scaling ordination showed significant relation...

The role of diatom resting spores in pelagic-benthic coupling in the Southern Ocean

NASA Astrophysics Data System (ADS)

Rembauville, Mathieu; Blain, Stéphane; Manno, Clara; Tarling, Geraint; Thompson, Anu; Wolff, George; Salter, Ian

2018-05-01

Natural iron fertilization downstream of Southern Ocean island plateaus supports large phytoplankton blooms and promotes carbon export from the mixed layer. In addition to sequestering atmospheric CO2, the biological carbon pump also supplies organic matter (OM) to deep-ocean ecosystems. Although the total flux of OM arriving at the seafloor sets the energy input to the system, the chemical nature of OM is also of significance. However, a quantitative framework linking ecological flux vectors to OM composition is currently lacking. In the present study we report the lipid composition of export fluxes collected by five moored sediment traps deployed in contrasting productivity regimes of Southern Ocean island systems (Kerguelen, Crozet and South Georgia) and compile them with quantitative data on diatom and faecal pellet fluxes. At the three naturally iron-fertilized sites, the relative contribution of labile lipids (mono- and polyunsaturated fatty acids, unsaturated fatty alcohols) is 2-4 times higher than at low productivity sites. There is a strong attenuation of labile components as a function of depth, irrespective of productivity. The three island systems also display regional characteristics in lipid export. An enrichment of zooplankton dietary sterols, such as C27Δ5, at South Georgia is consistent with high zooplankton and krill biomass in the region and the importance of faecal pellets to particulate organic carbon (POC) flux. There is a strong association of diatom resting spore fluxes that dominate productive flux regimes with energy-rich unsaturated fatty acids. At the Kerguelen Plateau we provide a statistical framework to link seasonal variation in ecological flux vectors and lipid composition over a complete annual cycle. Our analyses demonstrate that ecological processes in the upper ocean, e.g. resting spore formation and grazing, not only impact the magnitude and stoichiometry of the Southern Ocean biological pump, but also regulate the composition of exported OM and the nature of pelagic-benthic coupling.

[Impacts of large hydropower station on benthic algal communities].

PubMed

Jia, Xing-Huan; Jiang, Wan-Xiang; Li, Feng-Qing; Tang, Tao; Duan, Shu-Gui; Cai, Qing-Hua

2009-07-01

To investigate the impacts of large hydropower station in Gufu River on benthic algae, monthly samplings were conducted from September 2004 to June 2007 at the site GF04 which was impacted by the hydropower station, with the site GL03 in Gaolan River as reference. During sampling period, no significant differences were observed in the main physicochemical variables between GF04 and GL03, but the hydrodynamics differed significantly. GL03 was basically at a status of slow flow; while GF04, owing to the discharging from the reservoir, was at a riffle status during more than 60% of the sampling period. Such a difference in hydrodynamics induced significant differences in the community similarity of benthic algae and the relative abundance of unattached diatoms, erect diatoms, and stalked diatoms between GF04 and GL03, which could better reflect the impacts of irregular draw-off by large hydropower station on river eco-system.

Feasibility of remote sensing benthic microalgae

NASA Technical Reports Server (NTRS)

Zingmark, R. G.

1979-01-01

Results of data analyses from multispectral scanning data are presented. The data was collected in July 1977 for concentration of chlorophyll in benthic microalgae (mainly diatoms) on an estuary mudflat.

Inland diatoms from the McMurdo Dry Valleys and James Ross Island, Antarctica

USGS Publications Warehouse

Esposito, R.M.M.; Spaulding, S.A.; McKnight, Diane M.; Van De Vijver, B.; Kopalova, K.; Lubinski, D.; Hall, B.; Whittaker, T.

2008-01-01

Diatom taxa present in the inland streams and lakes of the McMurdo Dry Valleys and James Ross Island, Antarctica, are presented in this paper. A total of nine taxa are illustrated, with descriptions of four new species (Luticola austroatlantica sp. nov., Luticola dolia sp. nov., Luticola laeta sp. nov., Muelleria supra sp. nov.). In the perennially ice-covered lakes of the McMurdo Dry Valleys, diatoms are confined to benthic mats within the photic zone. In streams, diatoms are attached to benthic surfaces and within the microbial mat matrix. One species, L. austroatlantica, is found on James Ross Island, of the southern Atlantic archipelago, and the McMurdo Dry Valleys. The McMurdo Dry Valley populations are at the lower range of the size spectrum for the species. Streams flow for 6-10 weeks during the austral summer, when temperatures and solar radiation allow glacial ice to melt. The diatom flora of the region is characterized by species assemblages favored under harsh conditions, with naviculoid taxa as the dominant group and several major diatom groups conspicuously absent. ?? 2008 NRC.

The effects of hydrological dynamics on benthic diatom community structure in a highly stratified estuary: The case of the Ebro Estuary (Catalonia, Spain)

NASA Astrophysics Data System (ADS)

Rovira, L.; Trobajo, R.; Leira, M.; Ibáñez, C.

2012-04-01

This study of the distribution of benthic diatom assemblages and their relationship with environmental factors in a highly stratified Mediterranean estuary, i.e. the Ebro Estuary, shows the importance of hydrological dynamics to explain the features of the diatom community in such an estuary, where river flow magnitude and fluctuations imply strong physicochemical variability especially in sites close to the sea. Eight sites along the estuary were sampled during 2007-2008 both at superficial and deep water layers, in order to gather both horizontal and vertical estuarine physicochemical and hydrological gradients. Canonical Variates Analysis and Hierarchical Cluster Analysis segregated diatom community in two assemblages depending on the dynamics of the salt-wedge. The diatom assemblages of riverine conditions (i.e. without salt-wedge influence) where characterised by high abundances of Cocconeis placentula var. euglypta and Amphora pediculus, meanwhile high abundances of Nizschia frustulum and Nitzschia inconspicua were characteristic of estuarine conditions (i.e. under salt-wedge influence). Redundancy Analysis showed that both diatom assemblages responded seasonally to Ebro River flows, especially in estuarine conditions, where fluctuating conditions affected diatom assemblages both at spatial and temporal scale.

Diatoms as Proxies for Abrupt Events in the Hudson River Estuary

NASA Astrophysics Data System (ADS)

Skorski, W.; Abbott, D. H.; Recasens, C.; Breger, D. L.

2014-12-01

The Hudson River estuary has been subject to many abrupt events throughout its history including hurricanes, droughts and pluvials. Hurricanes in particular are rare, discrete events that if fingerprinted can be used to develop better age models for Hudson River sediments. Proxies use observed physical characteristics or biological assemblages (e.g. diatom and foraminiferal assemblages) as tools to reconstruct past conditions prior to the modern instrumental record. Using a sediment core taken from the Hudson River (CDO2-29A), in New York City, drought and pluvial layers were selected based on Cs-137 dating while hurricane layers were determined from occurrences of tropical to subtropical foraminifera. Contrary to previous studies (Weaver, 1970, Weiss et al, 1978), more than sixty different diatom species have been identified using a scanning electron microscope (SEM). Cosmopolitan, hurricane and drought assemblages have begun to be identified after observing multiple layers (Table 1). Tropical foraminifera dominated by Globigerinoides ruber pink were also found in a hurricane layer that we infer was deposited during Hurricane Belle in 1976. More diatom abundance analyses and cataloged SEM pictures will provide further insight into these proxies. Table 1 Diatom Genera and Species Environment Clarification Cyclotella caspia Planktonic, marine-brackish Cosmopolitan Karayevia clevei Freshwater Cosmopolitan Melosira sp Planktonic, marine Cosmopolitan Thalassiosira sp Marine, brackish Cosmopolitan Staurosirella leptostauron Benthic, freshwater Cosmopolitan Actinoptychus senarius Planktonic or benthic, freshwater to brackish Hurricane and pluvial layers Amphora aff. sp Benthic, marine or freshwater Hurricane layers only Nitzschia sp Benthic, marine or freshwater Hurricane layers only Gomphonema sp Freshwater Hurricane layers only Surirella sp Marine-brackish Drought layer only Triceratium sp Marine Drought layer only Other Genera and species Environment Clarification Globigerinoides ruber pink Tropical Hurricane layers only Silicoflagellate sp Planktonic, marine Hurricane layers only

Ecological effects of acid precipitation on primary producers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conway, H.L.; Hendrey, G.R.

1981-01-01

Non-acidic, oligotrophic lakes are typically dominated by golden-brown algae, diatoms and green algae. With increasing acidity, the number of species decrease and the species composition changes to dinoflagellates and golden-brown algae, with blue-green algae dominating in some cases. For macrophytic plants, dense stands of Sphagnum and Utricularia are found in some acidic lakes which may reduce nutrient availability and benthic regeneration. Hydrogen ion concentration does not appear to be as important as inorganic phosphorus in controlling primary production and biomass in acidic lakes. In acidic, oligotrophic lakes, benthic plants may have a competitive advantage over pelagic algae because of themore » high concentrations of inorganic carbon and phosphorus available to them in the sediment.« less

Tidal variability in benthic silicic acid fluxes and microphytobenthos uptake in intertidal sediment

NASA Astrophysics Data System (ADS)

Leynaert, Aude; Longphuirt, Sorcha Ní; An, Soonmo; Lim, Jae-Hyun; Claquin, Pascal; Grall, Jacques; Kwon, Bong Oh; Koh, Chul Hwan

2011-11-01

Silicic acid (DSi) benthic fluxes play a major role in the benthic-pelagic coupling of coastal ecosystems. They can sustain microphytobenthos (MPB) development at the water-sediment interface and support pelagic diatoms when river DSi inputs decrease. DSi benthic fluxes have been studied at the seasonal scale but little is known about their dial variations. This study measured the amplitude of such variations in an intertidal area over an entire tidal cycle by following the alteration of DSi pore water concentrations at regular intervals over the flood/ebb period. Furthermore we independently estimated the potential DSi uptake by benthic diatoms and compared it to the variations of DSi pore water concentrations and fluxes. The microphytobenthos DSi demand was estimated from primary production measurements on cells extracted from the sediment. There were large changes in DSi pore water concentration and a prominent effect of tidal pumping: the DSi flushed out from the sediment at rising tide, occurs in a very short period of time, but plays a far more important role in fueling the ecosystem (800 μmol-Si m -2 d -1), than diffusive fluxes occurring throughout the rest of the tidal cycle (2 μmol-Si m -2 d -1). This process is not, to our knowledge, currently considered when describing the DSi cycling of intertidal sediments. Moreover, there was a large potential MPB requirement for DSi (812 μmol-Si m -2 d -1), similar to the advective flow periodically pumped by the incoming tide, and largely exceeded benthic diffusive fluxes. However, this DSi uptake by benthic diatoms is almost undetectable given the variation of DSi concentration profiles within the sediment.

Diatom responses to precipitation and anthropogenic disturbances in an azorean lake during the last seven centuries

NASA Astrophysics Data System (ADS)

Vázquez-Loureiro, David; Bao, Roberto; Gonçalves, Vitor; Rubio-Inglés, Maria J.; Sáez, Alberto; Hernández, Armand; Raposeiro, Pedro M.; Pueyo, Juan J.; Masqué, Pere; Trigo, Ricardo; Giralt, Santiago

2015-04-01

Sedimentary lacustrine records provide an important source of knowledge of past environmental changes at regional and local scales. Here we perform a diatom-based paleoenvironmental reconstruction, complemented with geochemical proxies, of the recent history of Lake Azul (37° 52' 21' N - 25° 46' 26' W), located in the crater caldera of Sete Cidades volcano, São Miguel Island. A 132 cm long sediment core from the offshore and deepest part of the lake was selected, from a total of fourteen cores extracted in 2011, and dated with21Pb and137Cs, as well as AMS14C. Two main litological intervals were described: at the lower part there are hard volcanic rocks interbedding silty lacustrine episodes, whereas the upper part is made up by silty mud lacustrine sediments. Eight terrestrial-nearshore levels with high values of TOC/TN ratio, low values of δ13C and high abundances of aerophilic diatoms, plus nine volcanic levels, were removed from any further analysis in order to assess changes in in-lake processes. Main environmental gradients driving the composition of the diatom assemblages were explored by a Principal Component Analysis (PCA) on the diatom relative abundance data, and four statistically significant Diatom Assemblage Zones (DAZs) were defined with a cluster analysis (CONISS). The first axis of PCA (PC1), explaining 47.3% of total variance, confronts benthic vs tychoplanktonic and euplanktonic taxa, suggesting a relationship with water depth. The second axis (PC2) explained 23.1% of total variance, showing high positive values for eutrophic taxa of the genus Aulacoseira, and negative values for oligotrophic taxa and diatoms of a broad trophic spectrum. This axis is very likely related to a trophic gradient. DAZ-1 (c. 1280 - 1400 cal yr AD), dominated by benthic taxa, is characterized by positive values of PC1 and PC2, indicating relative shallow lake conditions and a high trophic level, respectively. A transition from a benthic to a facultatively planktonic community (lower PC1 values) occurs in DAZ-2 (c. 1400 - 1800 cal yr AD), suggesting a rise in water level, probably triggered by an increase in precipitation. Negative values of PC2 in this zone and DAZ-3 (c. 1800 - 1960 cal yr AD) might be explained by the dilution of nutrients in a larger water volume. The sharp transition to high positive values of PC2 in DAZ-4 (c. 1960 cal yr AD) coincides with the start in the use of nitrate- and phosphate-rich fertilizers in the surrounding farming area. Long-term changes in diatoms assemblages since the late XIII century in Lake Azul are driven by two factors of natural and anthropogenic origin, respectively; the strong inter-annual variability of the precipitation (largely controlled by the North Atlantic Oscillation, NAO), and the eutrophication of lakes in recent decades.

Diatoms as a paleoproductivity proxy in the NW Iberian coastal upwelling system (NE Atlantic)

NASA Astrophysics Data System (ADS)

Zúñiga, Diana; Santos, Celia; Froján, María; Salgueiro, Emilia; Rufino, Marta M.; De la Granda, Francisco; Figueiras, Francisco G.; Castro, Carmen G.; Abrantes, Fátima

2017-03-01

The objective of the current work is to improve our understanding of how water column diatom's abundance and assemblage composition is seasonally transferred from the photic zone to seafloor sediments. To address this, we used a dataset derived from water column, sediment trap and surface sediment samples recovered in the NW Iberian coastal upwelling system. Diatom fluxes (2.2 (±5.6) 106 valves m-2 d-1) represented the majority of the siliceous microorganisms sinking out from the photic zone during all studied years and showed seasonal variability. Contrasting results between water column and sediment trap diatom abundances were found during downwelling periods, as shown by the unexpectedly high diatom export signals when diatom-derived primary production achieved their minimum levels. They were principally related to surface sediment remobilization and intense Minho and Douro river discharge that constitute an additional source of particulate matter to the inner continental shelf. In fact, contributions of allochthonous particles to the sinking material were confirmed by the significant increase of both benthic and freshwater diatoms in the sediment trap assemblage. In contrast, we found that most of the living diatom species blooming during highly productive upwelling periods were dissolved during sinking, and only those resistant to dissolution and the Chaetoceros and Leptocylindrus spp. resting spores were susceptible to being exported and buried. Furthermore, Chaetoceros spp. dominate during spring-early summer, when persistent northerly winds lead to the upwelling of nutrient-rich waters on the shelf, while Leptocylindrus spp. appear associated with late-summer upwelling relaxation, characterized by water column stratification and nutrient depletion. These findings evidence that the contributions of these diatom genera to the sediment's total marine diatom assemblage should allow for the reconstruction of different past upwelling regimes.

DIATOMS AS INDICATORS OF ISOLATED HERBACEOUS WETLAND CONDITION IN FLORIDA, USA

EPA Science Inventory

Benthic, epiphytic, and phytoplanktonic diatoms, as well as soil and water physical-chemical parameters, were sampled from 70 small (~1 ha) isolated depressional herbaceous wetlands located along a gradient of human disturbance in peninsular Florida to: 1) compare assemblage str...

Cladocera from bottom deposits as an indicator of changes in climate and ecological conditions

NASA Astrophysics Data System (ADS)

Frolova, L. A.

2018-01-01

Diatoms, pollen, and remains of higher vegetation are used as indicator groups in paleoecological studies. Using certain groups of zoological indicators such as planktonic and benthic organisms (Ostracoda, Cladocera, Chironomidae) has recently become popular in paleolimnology and paleoecology. This study aims to estimate the possibilities, benefits, problems and prospects of Cladocera use in the composition of zoothanatocoenosis of lakes’ sediments as one of the biological indicators in paleoenvironmental studies and paleoreconstructions of abiotic conditions of the past.

Application of a spectrofluorimetric tool (bbe BenthoTorch) for monitoring potentially toxic benthic cyanobacteria in rivers.

PubMed

Echenique-Subiabre, Isidora; Dalle, Caroline; Duval, Charlotte; Heath, Mark W; Couté, Alain; Wood, Susanna A; Humbert, Jean-François; Quiblier, Catherine

2016-09-15

Over the last decade reports of animal poisoning following accidental consumption of neurotoxin-producing benthic cyanobacteria (mainly Phormidium spp.) have increased. There is a need for rapid and cost-effective tools to survey benthic cyanobacteria. In this study we assessed the performance of the BenthoTorch, a fluorometric probe that provides in situ estimations of cyanobacteria, diatoms and green algae biomass in biofilms. Biofilms (n = 288) were analysed from two rivers in France and eight in New Zealand. Correlations between chlorophyll-a measured using the BenthoTorch and spectrophotometry were higher for thin (<2 mm) compared to thick (>2 mm) biofilms (r(2) = 0.58 and 0.27 respectively; p < 0.001). When cyanobacteria represented less than 50% of the total biomass (based on biovolumes), microscopic and BenthoTorch compositional estimations were significantly correlated (r(2) = 0.53, p < 0.001). Conversely, there was no correlation when cyanobacteria exceeded 50% of the total biomass. Under this scenario diatoms were overestimated. Our results suggest that the observed biases occur because the BenthoTorch only measures the upper biofilm layer and it underestimates the biomass of phycoerythrin-containing cyanobacteria. To improve the performance of this sensor and render it a useful tool for a rapid evaluation of benthic cyanobacterial biomass in rivers, we propose that: (i) the algorithms based on the LEDs responses currently available on this tool need revision, (ii) new excitation wavelengths should be included that allow the fingerprints of phycoerythrin-containing cyanobacteria to be discriminated, and (iii) a sensor that penetrates the biofilms is needed to obtain more accurate estimates of cyanobacterial biomass. Copyright © 2016 Elsevier Ltd. All rights reserved.

ASSESSMENT STREAMS OF THE EASTERN UNITED STATES USING A PERIPHYTON INDEX OF BIOTIC INTEGRITY

EPA Science Inventory

Benthic algae were collected from 186 eastern United States streams and analyzed for diatom species richness and dominance, the relative abundance of acidobiontic, eutraphentic, and motile diatoms, standing crops of chlorophyll and biomass, and alkaline phosphatase activity. Thes...

Tidal Channel Diatom Assemblages Reflect within Wetland Environmental Conditions and Land Use at Multiple Scales

EPA Science Inventory

We characterized regional patterns of the tidal channel benthic diatom community and examined the relative importance of local wetland and surrounding landscape level factors measured at multiple scales in structuring this assemblage. Surrounding land cover was characterized at ...

Foraminifer- and diatom-based paleoceanographic study of Holocene sediments from the Sabrina Coast, East Antarctica

NASA Astrophysics Data System (ADS)

Vadman, K. J.; Shevenell, A.; Leventer, A.; Domack, E. W.; Huber, B. A.; Orsi, A. H.; Gulick, S. P. S.

2015-12-01

Cruise NBP14-02 conducted the first interdisciplinary oceanographic survey of the continental shelf adjacent to the Totten Glacier-Moscow University Ice Shelf system on the Sabrina Coast, East Antarctica. Hydrographic data indicate that this system is presently influenced by subsurface (>350 m) intrusion of relatively warm (>0°C) modified Circumpolar Deep Water (mCDW) via a cross-shelf trough. To assess the late Quaternary influence of mCDW, we collected marine sediment cores at two locations, each of which recovered a complete 10-13 m sequence of glacial diamict and Holocene laminated diatom ooze/mud. Chronology is constrained by 210Pb and species-specific foraminifer-based AMS 14C dates. Foraminifer CaCO3 is most abundant in surface sediments (0-0.2 mcd) and from 1.5 to 5 mcd. Planktic foraminifer, Neogloboquadrina pachyderma(s), dominates surface sediments and diatom muds downcore, but is less abundant in diatom oozes. Benthic foraminifer species, Bulimina aculeata, which prefers hemipelagic environments and bottom waters >0°C, dominates the living benthic assemblage. The fossil benthic assemblage is characterized by Trifarina angulosa, associated with oxygenated bottom waters and strong bottom currents, suggesting that this assemblage may record past changes in the shoreward flow of ocean currents and the location of oceanic frontal zones. T. angulosa presence in oozes of mat-forming diatom species associated with oceanic fronts, supports this interpretation. Modern benthic and planktic δ18O suggest a well-mixed water column. Below 1.5 mcd, foraminifer isotopes and diatom assemblages indicate surface stratification and increased biogenic productivity, suggesting that modern environmental conditions, including mCDW inflow, existed episodically during the Holocene. Paired T. angulosa δ18O and Mg/Ca analyses will provide additional information on past mCDW influence on this climatically sensitive region at the outlet of the extensive (287,000 km2) Aurora Subglacial Basin, which holds a 2-4.5 km thick volume of ice equivalent to >5 m of eustatic sea level rise.

Uptake of algal carbon and the synthesis of an "essential" fatty acid by Uvigerina ex. gr. semiornata (Foraminifera) within the Pakistan margin oxygen minimum zone: evidence from fatty acid biomarker and 13C tracer experiments

NASA Astrophysics Data System (ADS)

Larkin, K. E.; Gooday, A. J.; Woulds, C.; Jeffreys, R.; Schwartz, M.; Cowie, G.; Whitcraft, C.; Levin, L.; Dick, J. R.; Pond, D. W.

2014-01-01

Foraminifera are an important component of benthic communities in oxygen depleted settings, where they potentially play a~significant role in the processing of organic matter. We tracked the uptake of a 13C-labeled algal food source into individual fatty acids in the benthic foraminiferal species, Uvigerina ex. gr. semiornata, from the Arabian Sea oxygen minimum zone (OMZ). The tracer experiments were conducted on the Pakistan Margin during the late/post monsoon period (August-October 2003). A monoculture of the diatom Thalassiosira weisflogii was 13C-labeled and used to simulate a pulse of phytoplankton in two complementary experiments. A lander system was used for in situ incubations at 140 m and for 2.5 days duration, whilst a laboratory incubation used an oxystat system to maintain ambient dissolved oxygen concentrations. These shipboard experiments were terminated after 5 days. Uptake of diatoms was rapid, with high incorporation of diatom fatty acids into foraminifera after ~2 days in both experiments. Ingestion of the diatom food source was indicated by the increase over time in the quantity of diatom biomarker fatty acids in the foraminifera and by the high percentage of 13C in many of the fatty acids present at the endpoint of both in~situ and laboratory-based experiments. These results indicate that U. ex. gr. semiornata rapidly ingested the diatom food source and that this foraminifera will play an important role in the short-term cycling of organic matter within this OMZ environment. The experiments also suggested that U. ex. gr. semiornata consumed non-labeled bacterial food items, particularly bacteria, and synthesised the polyunsaturated fatty acid 20:4(n-6) de novo. 20:4(n-6) is often abundant in benthic fauna yet its origins and function have remained unclear. This study demonstrates that U. ex. gr. semiornata is capable of de novo synthesis of this "essential fatty acid" and is potentially a major source of this dietary nutrient in benthic food webs.

Uptake of algal carbon and the likely synthesis of an "essential" fatty acid by Uvigerina ex. gr. semiornata (Foraminifera) within the Pakistan margin oxygen minimum zone: evidence from fatty acid biomarker and 13C tracer experiments

NASA Astrophysics Data System (ADS)

Larkin, K. E.; Gooday, A. J.; Woulds, C.; Jeffreys, R. M.; Schwartz, M.; Cowie, G.; Whitcraft, C.; Levin, L.; Dick, J. R.; Pond, D. W.

2014-07-01

Foraminifera are an important component of benthic communities in oxygen-depleted settings, where they potentially play a significant role in the processing of organic matter. We tracked the uptake of a 13C-labelled algal food source into individual fatty acids in the benthic foraminiferal species Uvigerina ex. gr. semiornata from the Arabian Sea oxygen minimum zone (OMZ). The tracer experiments were conducted on the Pakistan margin during the late/post monsoon period (August-October 2003). A monoculture of the diatom Thalassiosira weisflogii was 13C-labelled and used to simulate a pulse of phytoplankton in two complementary experiments. A lander system was used for in situ incubations at 140 m water depth and for 2.5 days in duration. Shipboard laboratory incubations of cores collected at 140 m incorporated an oxystat system to maintain ambient dissolved oxygen concentrations and were terminated after 5 days. Uptake of diatoms was rapid, with a high incorporation of diatom fatty acids into foraminifera after ~ 2 days in both experiments. Ingestion of the diatom food source was indicated by the increase over time in the quantity of diatom biomarker fatty acids in the foraminifera and by the high percentage of 13C in many of the fatty acids present at the endpoint of both in situ and laboratory-based experiments. These results indicate that

Mussels can both outweigh and interact with the effects of terrestrial to freshwater resource subsidies on littoral benthic communities.

PubMed

Smith, Bethany R; Aldridge, David C; Tanentzap, Andrew J

2018-05-01

Litterfall is an important resource subsidy for lake ecosystems that primarily accumulates in littoral zones. Bivalves are abundant within littoral zones and may modify the effects of terrestrial resource subsidies through trophic interactions and engineering their surrounding habitat. Leaf inputs to lakes and freshwater mussel abundances are changing throughout the boreal ecoregion so we set out to investigate how the co-occurring benthic community might respond. We set up an in situ mesocosm experiment in Ramsey Lake, Sudbury, ON, Canada. Mesocosms contained sediments of either 5% or 35% terrestrial organic matter (tOM), into which we placed mussels (Elliptio complanata) at differing densities (0, 0.4 and 2musselsm -2 , with a sham mussel treatment at 0.4musselsm -2 ). Over one month we recorded the sediment chemistry (dissolved organic carbon, nitrogen and phosphorus), littoral organisms (benthic algae and zooplankton) and mussel growth. At high mussel densities we recorded a 90%, 80%, 45% and 40% reduction in phosphorus, dissolved organic carbon, nitrogen and benthic diatoms, respectively, whereas at low mussel densities we observed a 3-fold increase in zooplankton. We discuss that these results were caused by a combination of bioturbation and trophic interactions. Benthic diatom concentrations were also reduced by 20% in sediments of 35% tOM, likely due to shading and competition with bacteria. Mussel growth increased at high mussel densities but was offset at high tOM, likely due to the organic matter interfering with filter feeding. Our results suggest that mussels can alter the geochemical composition of sediments and abundances of associated littoral organisms, in some cases regardless of tOM quantity. Therefore, the dominant top-down control exerted by freshwater mussels may outweigh bottom-up effects of tOM additions. Generally, our study reveals the importance of considering dominant species when studying the effects of cross-ecosystem resource fluxes. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Surviving anoxia in marine sediments: The metabolic response of ubiquitous benthic foraminifera (Ammonia tepida).

PubMed

LeKieffre, Charlotte; Spangenberg, Jorge E; Mabilleau, Guillaume; Escrig, Stéphane; Meibom, Anders; Geslin, Emmanuelle

2017-01-01

High input of organic carbon and/or slowly renewing bottom waters frequently create periods with low dissolved oxygen concentrations on continental shelves and in coastal areas; such events can have strong impacts on benthic ecosystems. Among the meiofauna living in these environments, benthic foraminifera are often the most tolerant to low oxygen levels. Indeed, some species are able to survive complete anoxia for weeks to months. One known mechanism for this, observed in several species, is denitrification. For other species, a state of highly reduced metabolism, essentially a state of dormancy, has been proposed but never demonstrated. Here, we combined a 4 weeks feeding experiment, using 13C-enriched diatom biofilm, with correlated TEM and NanoSIMS imaging, plus bulk analysis of concentration and stable carbon isotopic composition of total organic matter and individual fatty acids, to study metabolic differences in the intertidal species Ammonia tepida exposed to oxic and anoxic conditions. Strongly contrasting cellular-level dynamics of ingestion and transfer of the ingested biofilm components were observed between the two conditions. Under oxic conditions, within a few days, intact diatoms were ingested, degraded, and their components assimilated, in part for biosynthesis of different cellular components: 13C-labeled lipid droplets formed after a few days and were subsequently lost (partially) through respiration. In contrast, in anoxia, fewer diatoms were initially ingested and these were not assimilated or metabolized further, but remained visible within the foraminiferal cytoplasm even after 4 weeks. Under oxic conditions, compound specific 13C analyses showed substantial de novo synthesis by the foraminifera of specific polyunsaturated fatty acids (PUFAs), such as 20:4(n-6). Very limited PUFA synthesis was observed under anoxia. Together, our results show that anoxia induced a greatly reduced rate of heterotrophic metabolism in Ammonia tepida on a time scale of less than 24 hours, these observations are consistent with a state of dormancy.

Surviving anoxia in marine sediments: The metabolic response of ubiquitous benthic foraminifera (Ammonia tepida)

PubMed Central

Spangenberg, Jorge E.; Mabilleau, Guillaume; Escrig, Stéphane; Meibom, Anders; Geslin, Emmanuelle

2017-01-01

High input of organic carbon and/or slowly renewing bottom waters frequently create periods with low dissolved oxygen concentrations on continental shelves and in coastal areas; such events can have strong impacts on benthic ecosystems. Among the meiofauna living in these environments, benthic foraminifera are often the most tolerant to low oxygen levels. Indeed, some species are able to survive complete anoxia for weeks to months. One known mechanism for this, observed in several species, is denitrification. For other species, a state of highly reduced metabolism, essentially a state of dormancy, has been proposed but never demonstrated. Here, we combined a 4 weeks feeding experiment, using 13C-enriched diatom biofilm, with correlated TEM and NanoSIMS imaging, plus bulk analysis of concentration and stable carbon isotopic composition of total organic matter and individual fatty acids, to study metabolic differences in the intertidal species Ammonia tepida exposed to oxic and anoxic conditions. Strongly contrasting cellular-level dynamics of ingestion and transfer of the ingested biofilm components were observed between the two conditions. Under oxic conditions, within a few days, intact diatoms were ingested, degraded, and their components assimilated, in part for biosynthesis of different cellular components: 13C-labeled lipid droplets formed after a few days and were subsequently lost (partially) through respiration. In contrast, in anoxia, fewer diatoms were initially ingested and these were not assimilated or metabolized further, but remained visible within the foraminiferal cytoplasm even after 4 weeks. Under oxic conditions, compound specific 13C analyses showed substantial de novo synthesis by the foraminifera of specific polyunsaturated fatty acids (PUFAs), such as 20:4(n-6). Very limited PUFA synthesis was observed under anoxia. Together, our results show that anoxia induced a greatly reduced rate of heterotrophic metabolism in Ammonia tepida on a time scale of less than 24 hours, these observations are consistent with a state of dormancy. PMID:28562648

Reconstructing the climatic ultrastructure and aquatic biotic communities response to Heinrich stadials in the continental northern Neotropics

NASA Astrophysics Data System (ADS)

Cohuo, Sergio; Macario, Laura; Sylvestre, Florence; Pailles, Christine; Kutterolf, Steffen; Pérez, Liseth; Curtis, Jason; Schwalb, Antje

2016-04-01

Heinrich stadials (HS) are recognized as fast-acting "pulses" of global rapid environmental change that affect the climate and cause alterations in species composition and distribution. Past changes in aquatic ecosystems due to HSs may be an analog for future disruptions caused by climate change in the Neotropics. Our aim is to provide high resolution water temperature and conductivity records for HSs (HS1-HS6) in the northern Neotropics and identify their effects on aquatic communities. We analyzed the geochemical sediment composition (TIC and TOC) and quantified ostracode and diatom fossil abundances in cores PI-6 (73m long, from71m water depth) and PI-2 (84m long and from 54m water depth) from Lake Petén Itzá, Guatemala. Sediment cores were dated using a combination of radiocarbon and tephra chronology. Taxonomical analysis revealed that the ostracode fauna through all HSs had an exclusive tropical composition, reflecting that water temperatures remained warm, likely within the current tolerant range (26-33°C) observed for modern species inhabiting Central American lakes. Because of these warm conditions on the lake ecosystem, we infer that there was not a large change in temperatures as suggested by Hodell et al. (2012), but a small on such at the 5°C suggested by Correa-Metrio et al. (2012). Sediments during HSs are dominated by gypsum, suggesting variable water solute composition. Low TIC and TOC values during HSs indicate that these variations resulted from a decrease in precipitation and prevailing dry conditions. Bioproxy composition however, suggests sharp climatic transitions from humid to arid (HS5, HS3and H1) and from arid to humid (HS4, HS2). HS6 (63.2-60.1 ka BP) was characterized by domination of benthic diatoms and nektobenthic Cypria petenensis, Paracythereis opesta and Pseudocandona sp. ostracode species, suggesting low lake levels with predominance of littoral conditions. HS5 (50-47ka BP), HS3 (32.7-31.3ka BP) and HS1 (18-15.6ka BP) were characterized by rapid changes from planktonic to benthic diatoms, suggesting deepening of water. These transitions occurred at the onset of HS5, the middle-end of HS3 and the end of HS1. Lake ecosystem, thus had different response to these events. Ostracode community during HS5 was characterized by the nektobenthic and conductivity tolerant ostracodes Cypridopsis vidua, C. petenensis, P. opesta and Heterocypris putei suggesting low lake levels prevailing with high conductivity. During HS1 and HS3 ostracode assemblages was mostly dominated by nektobenthic species with the emergence of conductivity-tolerant H. putei at the end of the periods. Thus, humid conditions dominated during these HSs, but they ended with a rapid transition to a dry environment with increasing of conductivity. HS4 (38.3-40.2ka BP) and HS2 (24.3-26.5ka BP) showed abrupt changes from benthic to planktonic diatoms suggesting increasing water depth due to increased precipitation rates. The HS4 ostracode assemblage was initially dominated by benthic species such as Pseudocandona sp and Darwinula stevensoni but later on only necktobenthic species were present. Similar patter occurred during HS2, but the dominance of littoral-related species lasted longer, suggesting predominant dry conditions and low lake levels. The occurrence of necktobenthic species at the end of the period suggests increase of humidity. Our study highlights good agreement of the cores analyzed from different water depths and the applicability of multiproxy approach for a high resolution interpretation of past climate forces in northern Neotropics.

A conceptual model for the growth, persistence, and blooming behavior of the benthic mat-forming diatom Didymosphenia geminata (Invited)

NASA Astrophysics Data System (ADS)

Cullis, J. D.; Gillis, C.; Bothwell, M.; Kilroy, C.; Packman, A. I.; Hassan, M. A.

2010-12-01

The nuisance diatom Didymosphenia geminata (didymo) presents an ecological paradox. How can this benthic algae produce such large amounts of biomass in cold, fast flowing, low nutrient streams? The aim of this paper is to present a conceptual model for the growth, persistence, and blooming behavior of this benthic mat-forming diatom that may help to explain this paradox. The conceptual model highlights the importance of distinguishing between mat thickness and cell growth. It presents evidence gathered from a range of existing studies around the world to support the proposed relationship between growth and light, nutrients and temperature as well as the importance of flood events and bed disturbance in mat removal. It is anticipated that this conceptual model will not only help in identifying the key controlling variables and set a framework for future studies but also support the future management of this nuisance algae. Summary of the conceptual model for didymo growth showing the proposed relationships for the growth of cells and mats with nutrients, radiation and water temperature and the dependence of removal on bed shear stress and the potential for physical bed disturbance.

Development of the initial diatom microfouling layer on antifouling and fouling-release surfaces in temperate and tropical Australia.

PubMed

Molino, Paul J; Campbell, Ewan; Wetherbee, Richard

2009-11-01

Diatoms are a major component of the slime layers that form on artificial surfaces in marine environments. In this article, the role played by diatoms during the pioneering stages of colonization of three marine antifouling (AF) coatings, viz Intersmooth 360, Super Yacht 800 and a fouling-release (FR) coating Intersleek 700, was investigated. The study was conducted over three distinct seasons in two very different marine environments in Australia, ie temperate Williamstown, Victoria and tropical Cairns, Queensland. Diatom fouling occurred more rapidly on the FR coating Intersleek 700, compared to both biocidal AF paints. However, colonization by diatoms on all three coatings was generally slow during the 16-day study. Benthic diatoms do not subsist by floating around in the water column, rather they only gain the opportunity to colonize new surfaces when they either voluntarily release or are displaced from their benthic habitat, thereafter entering the water column where the opportunity to adhere to a new surface presents itself. However, once settled, fouling diatoms grow exponentially from the site of attachment, spreading out until they populate large areas of the surface. This mode of surface colonization correlates more with an 'infection' type, epidemiology model, a mechanism that accounts for the colonization of significant regions of the coating surface from a single fouling diatom cell, forming 'clonal patches'. This is in comparison to the bacterial colonization of the surface, which exhibits far more rapid recruitment and growth of cells on the substratum surface. Therefore, it is hypothesized that fouling diatoms may be characterized more by their ability to adhere and grow on surfaces already modified by bacterial biofilms, rather than on their strength of adhesion. Cell morphology and the ability to avoid shear may also be an important factor.

The cascade construction of artificial ponds as a tool for urban stream restoration - The use of benthic diatoms to assess the effects of restoration practices.

PubMed

Żelazna-Wieczorek, Joanna; Nowicka-Krawczyk, Paulina

2015-12-15

A series of cascade artificial ponds were constructed to improve the ecological status of the stream. To evaluate the effects of restoration practices, a bioassessment, based on phytobenthic algae - the diatoms, was made. Hierarchical Cluster Analysis (HCA) and Principal Component Analysis (PCA) of diatom assemblages allowed for evaluating the influence of a series of cascade artificial ponds on stream integrity. To reveal which environmental factors had the greatest influence on shaping diatom assemblages, the BIO-ENV procedure was used, and in order to examine whether these factors had equal influence on diatoms along the stream, Redundancy Analysis (RDA) was used. The analysis of diatom assemblages allowed for the calculation of the diatom indices in order to assess the water quality and the ecological status of the stream. Artificial ponds constructed on the stream had significant effects on the integrity of the stream ecosystem. Diatom assemblages characteristic of stream habitats were disrupted by the species from ponds. HCA and PCA revealed that the stream was clearly divided into three sections: ponds, stream parts under the influence of ponds, and stream parts isolated from ponds. The ponds thus altered stream environmental conditions. Benthic diatom assemblages were affected by a combination of four environmental factors: the concentration of ammonium ions, dissolved oxygen, conductivity, and the amount of total suspended material in the water. These factors, together with water pH, had a diverse influence on diatom assemblages alongside the stream, which was caused by a series of cascade ponds. In theory, this restoration practice should restore the stream close to its natural state, but bioassessment of the stream ecosystem based on diatoms revealed that there was no improvement of the ecological status alongside the stream. The construction of artificial ponds disrupted stream continuity and altered the character of the stream ecosystem. Copyright © 2015 Elsevier B.V. All rights reserved.

Continental diatom biodiversity in stream benthos declines as more nutrients become limiting

PubMed Central

Passy, Sophia I.

2008-01-01

Biodiversity of both terrestrial ecosystems and lacustrine phytoplankton increases with niche dimensionality, which can be determined by the number of limiting resources (NLR) in the environment. In the present continental study, I tested whether niche dimensionality and, with this species, richness scale positively with NLR in running waters. Diatom richness in 2,426 benthic and 383 planktonic communities from 760 and 127 distinct localities, respectively, was examined as a function of NLR, including basic cations, silica, iron, ammonia, nitrate, and dissolved phosphorus. The patterns found in the two communities were opposite: as more resources became limiting, diatom richness declined in the benthos but increased in the phytoplankton. The divergence of benthic from both planktonic and terrestrial communities is attributed to the complex spatial organization of the benthos, generating strong internal resource gradients. Differential stress tolerance among benthic diatoms allows substantial overgrowth, which greatly reduces nutrient transport to the biofilm base and can be supported only by high ambient resource levels. Therefore, niche dimensionality in the benthos increases with the number of resources at high supply. These findings provide a mechanistic explanation of the well documented phenomenon of increased species richness after fertilization in freshwater as opposed to terrestrial ecosystems. Clearly, however, new theoretical approaches, retaining resource availability as an environmental constraint but incorporating a trade-off between tolerance and spatial positioning, are necessary to address coexistence in one of the major producer communities in streams, the algae. PMID:18599459

Diatom cultivation and biotechnologically relevant products. Part I: cultivation at various scales.

PubMed

Lebeau, Thierry; Robert, Jean-Michel

2003-02-01

Biotechnological applications of diatoms are still in development. Further development at the industrial scale will depend on optimisation of the culture process with the aim of reducing costs. Because of the photoautotrophic status of the majority of diatoms, microalgal cultures suffer from the limitation of light diffusion, which requires the development of suitable photobioreactors. Thus, genetically engineered microalgae that may be cultivated in heterotrophic conditions present a new opportunity. Other limiting factors, such as nutrients (phosphate, nitrogen, silicon), pH, temperature, bioturbation and many more must be taken into account. Most of the time, metabolic stress conditions lead to an overproduction of the products of interest, with a decrease in biomass production as a consequence. Outdoor cultures in open ponds are usually devoted to aquaculture for the feeding of shrimps and bivalve molluscs (commercial production), while closed axenic indoor/outdoor photobioreactors are used for biotechnological compounds of homogeneous composition (still at the laboratory scale). In addition to the optimum culture conditions that have to be taken into account for photobioreactor design, the localisation of produced metabolites (intra- or extracellular) may also be taken into account when choosing the design. Microalgal cell immobilisation may be a suitable technique for application to benthic diatoms, which are usually sensitive to bioturbation and/or metabolites which may be overexpressed.

Attraction Pheromone of The Benthic Diatom Seminavis robusta: Studies on Structure-Activity Relationships.

PubMed

Lembke, Christine; Stettin, Daniel; Speck, Franziska; Ueberschaar, Nico; De Decker, Sam; Vyverman, Wim; Pohnert, Georg

2018-04-01

Recently the first pheromone of a marine diatom was identified to be the diketopiperazine (S,S)-diproline. This compound facilitates attraction between mating partners in the benthic diatom Seminavis robusta. Interestingly, sexualized S. robusta cells are attracted to both the natural pheromone (S,S)-diproline as well as to its enantiomer (R,R)-diproline. Usually stereospecificity is a prerequisite for successful substrate-receptor interactions, and especially pheromone perception is often highly enantioselective. Here we introduce a structure-activity relationship study, to learn more about the principles of pheromone reception in diatoms. We analyzed the activity of nine different diketopiperazines in attraction and interference assays. The pheromone diproline itself, as well as a pipecolic acid derived diketopiperazine with two expanded aliphatic ring systems, showed the highest attractivity. Hydroxylatoin of the aliphatic rings abolished any bioactivity. Diketopiperazines derived from acyclic amino acids were not attrative as well. All stereoisomers of both the diproline and the pipecolic acid derived diketopiperazine were purified by enantioselective high-performance liquid chromatography, and application in bioactivity tests confirmed that attraction pheromone perception in this diatom is indeed not stereospecific. However, the lack of activity of diketopiperazines derived from acyclic amino acids suggests a specificity that prevents misguidance to sources of other naturally occurring diketopiperazines.

Microphytobenthos in ecotoxicology: a review of the use of marine benthic diatoms in bioassays.

PubMed

Araújo, Cristiano V M; Blasco, Julián; Moreno-Garrido, Ignacio

2010-08-01

Contamination in coastal zones is an increasing problem that adversely affects biological diversity and the functioning of coastal ecosystems. Sediment is an important compartment of these zones since large quantities of diverse contaminants can accumulate there. Whole-sediment toxicity assays are of increasing importance, and several assay methods using mainly invertebrates have been developed. However, an important part of the benthic community, the microphytobenthos (represented principally by benthic diatoms and cyanobacteria), has surprisingly been neglected. Recently, comprehensive studies have been conducted using benthic marine microalgae with the object of establishing a toxicity assay method for sediment samples. The main results published to date in the literature and obtained by our own team have been compiled and are discussed in this review. The value and feasibility of using certain organisms of the microphytobenthos group in ecotoxicology studies are also discussed, and a sediment quality guideline based on multivariate procedure has been derived from data obtained in previous studies. Finally, future perspectives for research in this field are discussed. Copyright 2010 Elsevier Ltd. All rights reserved.

Diagenetic alteration of biogenic silica oxygen isotope values: implications for use as a paleoenvironmental proxy

NASA Astrophysics Data System (ADS)

Dodd, J. P.; Abbott, T.; Scherer, R. P.

2016-12-01

Oxygen isotope (δ18O) values of biogenic silica have enormous potential as paleoenvironmental proxies in marine and non-marine environments. Isotopic exchange and phase changes (opal-A to opal-CT) can overprint the initial δ18O values, but these diagenetic processes can also provide additional paleoenvironmental information. The timing and magnitude of isotopic exchange reactions are difficult to constrain in natural environments; however, experimental results of diatom aging indicate that changes in the δ18O values of the biogenic silca occur coincident with dehydroxylation of the silica prior to opal-CT formation. Diagenetic alteration of biogenic silica dramatically changes our interpretation of silica isotope data from sedimentary records. For example, diatom δ18O values from a Pliocene ( 4.68 to 3.44 Ma) age marine sediment core (AND-1B) from the Ross Sea, Antarctica range from +28 to +36‰. The silica-water fractionation relationship for marine diatoms of Juillet-Leclerc and Labeyrie (1987) and a standard marine δ18O water value of 0‰ results in unrealistic sea surface temperatures of >20°C. Conversely, if water temperatures of 0 to 10°C are used, the resulting water δ18O values range from -8 to -16‰. A plausible alternate scenario is that the diatom δ18O values are recording sediment pore-water conditions. Pore waters in the AND-2A core had δ18O values of -11‰, possibly as a result cryogenic brine formation (Frank et al., 2010). These low δ18O values are in close agreement with our calculated δ18O water values. Despite diagenetic overprinting of the diatom δ18O values, there is still good agreement between the measured diatom δ18O values and the stacked benthic δ18O record (Lisiecki and Raymo, 2005); biogenic silica δ18O values in the AND-1B core likely record the composition of shallow sediment pore water and cryogenic brine formation. The agreement between our δ18O record and the benthic stack δ18O values suggests that brine formation in the early Pliocene Ross Sea may be driven by regional and global scale climate processes. Sedimentary diatoms most likely represent a combination of growth and diagenetic environments, and the δ18O value of diagenetic water needs to be addressed when reconstructing paleoceanographic and paleoenvironmental conditions.

Isotopic Determination of Food Sources of Crassostrea gigasAlong a Trophic Gradient in the Estuarine Bay of Marennes-Ol éron

NASA Astrophysics Data System (ADS)

Riera, P.; Richard, P.

1996-03-01

Along a trophic gradient from the head of an estuary to the open ocean, carbon isotope ratios were determined both in tissues of the Pacific oyster Crassostrea gigasand in different components of the oysters ' potential food resource. In the study area, the Marennes-Ol éron Bay (France), a gradient in δ 13C occurred in the particulate organic carbon (POC) from riverine ( -29 ·2 - -27 ·4 ‰) to open sea littoral ( -21 ·8 - -19 ·5 ‰). Isotope composition of oysters collected along this estuarine gradient followed a similar trend, indicating a predominant contribution of organic matter derived from terrestrial detritus to the diet of C. gigasinhabiting the upper estuarine reaches. A remarkable departure from this general pattern was noted in the isotope composition of oysters sampled from a reef, at the mouth of the Charente river. These oysters exhibited enriched 13C composition, suggesting that they were largely feeding upon benthic microalgae ( -16 ‰) from an adjacent wide mudflat. The reported results suggest that C. gigasis able to preferentially ingest and/or assimilate particular food sources (i.e. benthic diatoms) among diverse sources within the total organic matter pool.

Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure

PubMed Central

Learman, Deric R.; Henson, Michael W.; Thrash, J. Cameron; Temperton, Ben; Brannock, Pamela M.; Santos, Scott R.; Mahon, Andrew R.; Halanych, Kenneth M.

2016-01-01

Western Antarctica, one of the fastest warming locations on Earth, is a unique environment that is underexplored with regards to biodiversity. Although pelagic microbial communities in the Southern Ocean and coastal Antarctic waters have been well-studied, there are fewer investigations of benthic communities and most have a focused geographic range. We sampled surface sediment from 24 sites across a 5500 km region of Western Antarctica (covering the Ross Sea to the Weddell Sea) to examine relationships between microbial communities and sediment geochemistry. Sequencing of the 16S and 18S rRNA genes showed microbial communities in sediments from the Antarctic Peninsula (AP) and Western Antarctica (WA), including the Ross, Amundsen, and Bellingshausen Seas, could be distinguished by correlations with organic matter concentrations and stable isotope fractionation (total organic carbon; TOC, total nitrogen; TN, and δ13C). Overall, samples from the AP were higher in nutrient content (TOC, TN, and NH4+) and communities in these samples had higher relative abundances of operational taxonomic units (OTUs) classified as the diatom, Chaetoceros, a marine cercozoan, and four OTUs classified as Flammeovirgaceae or Flavobacteria. As these OTUs were strongly correlated with TOC, the data suggests the diatoms could be a source of organic matter and the Bacteroidetes and cercozoan are grazers that consume the organic matter. Additionally, samples from WA have lower nutrients and were dominated by Thaumarchaeota, which could be related to their known ability to thrive as lithotrophs. This study documents the largest analysis of benthic microbial communities to date in the Southern Ocean, representing almost half the continental shoreline of Antarctica, and documents trophic interactions and coupling of pelagic and benthic communities. Our results indicate potential modifications in carbon sequestration processes related to change in community composition, identifying a prospective mechanism that links climate change to carbon availability. PMID:27047451

Bivalve grazing can shape phytoplankton communities

USGS Publications Warehouse

Lucas, Lisa; Cloern, James E.; Thompson, Janet K.; Stacey, Mark T.; Koseff, Jeffrey K.

2016-01-01

The ability of bivalve filter feeders to limit phytoplankton biomass in shallow waters is well-documented, but the role of bivalves in shaping phytoplankton communities is not. The coupled effect of bivalve grazing at the sediment-water interface and sinking of phytoplankton cells to that bottom filtration zone could influence the relative biomass of sinking (diatoms) and non-sinking phytoplankton. Simulations with a pseudo-2D numerical model showed that benthic filter feeding can interact with sinking to alter diatom:non-diatom ratios. Cases with the smallest proportion of diatom biomass were those with the fastest sinking speeds and strongest bivalve grazing rates. Hydrodynamics modulated the coupled sinking-grazing influence on phytoplankton communities. For example, in simulations with persistent stratification, the non-sinking forms accumulated in the surface layer away from bottom grazers while the sinking forms dropped out of the surface layer toward bottom grazers. Tidal-scale stratification also influenced vertical gradients of the two groups in opposite ways. The model was applied to Suisun Bay, a low-salinity habitat of the San Francisco Bay system that was transformed by the introduction of the exotic clam Potamocorbula amurensis. Simulation results for this Bay were similar to (but more muted than) those for generic habitats, indicating that P. amurensis grazing could have caused a disproportionate loss of diatoms after its introduction. Our model simulations suggest bivalve grazing affects both phytoplankton biomass and community composition in shallow waters. We view these results as hypotheses to be tested with experiments and more complex modeling approaches.

Surface-water quality, Oneida Reservation and vicinity, Wisconsin, 1997-98

USGS Publications Warehouse

Schmidt, Morgan A.; Scudder, Barbara C.; Richards, Kevin D.

2000-01-01

Assessments of the benthic algal community provided relative results as did invertebrate community assessments. Shannon-Wiener diversity values for diatoms indicate that algal communities are under minor stress in four of five streams sampled and under moderate stress in Dutchman Creek. A pollution index based on the percentages of diatoms that are pollution sensitive and pollution tolerant revealed that pollution at Dutchman Creek likely is moderate; pollution at the other four sampled creeks is either minor or nonexistent in terms of effects on the diatom community.

Response of an algal assemblage to nutrient enrichment and shading in a Hawaiian stream

USGS Publications Warehouse

Stephens, S.H.; Brasher, A.M.D.; Smith, C.M.

2012-01-01

To investigate the effects of nitrate enrichment, phosphate enrichment, and light availability on benthic algae, nutrient-diffusing clay flowerpots were colonized with algae at two sites in a Hawaiian stream during spring and autumn 2002 using a randomized factorial design. The algal assemblage that developed under the experimental conditions was investigated by determining biomass (ash-free dry mass and chlorophyll a concentrations) and composition of the diatom assemblage. In situ pulse amplitude-modulated fluorometry was also used to model photosynthetic rate of the algal assemblage. Algal biomass and maximum photosynthetic rate were significantly higher at the unshaded site than at the shaded site. These parameters were higher at the unshaded site with either nitrate, or to a lesser degree, nitrate plus phosphate enrichment. Analysis of similarity of diatom assemblages showed significant differences between shaded and unshaded sites, as well as between spring and autumn experiments, but not between nutrient treatments. However, several individual species of diatoms responded significantly to nitrate enrichment. These results demonstrate that light availability (shaded vs. unshaded) is the primary limiting factor to algal growth in this stream, with nitrogen as a secondary limiting factor. ?? 2011 Springer Science+Business Media B.V.

Benthic diatoms from Potter Cove, 25 de Mayo (King George) Island, Antarctica: Mucilage and glucan storage as a C-source for limpets

NASA Astrophysics Data System (ADS)

Daglio, Yasmin; Sacristán, Hernán; Ansaldo, Martín; Rodríguez, María C.

2018-03-01

Biofilms were allowed to develop on ceramic tiles placed in closed containers on the shore of Potter Cove, 25 de Mayo (King George) Island. Water pumping from the cove inside the containers extended for 25 days. Diatoms were the dominant microalgae in these biofilms, which were removed from a set of tiles to a) characterize the extracellular mucilage, b) carry out floristic determination and c) perform grazing experiments with the limpet Nacella concinna. Biofilms mucilaginous matrix consisted of proteins and carbohydrates. Room temperature aqueous extraction of the freeze-dried material rendered a fraction enriched in the storage glucan chrysolaminarin, its identity confirmed by methylation structural analyses. Hot water extracted products showed greater heterogeneity in monosaccharide composition, including glucose, mannose, galactose, fucose, xylose and rhamnose. Diatom identification revealed that Pseudogomphonema kamtschaticum was the dominant species followed by several Navicula species, Nitzschia pellucida and Synedra kerguelensis. Photographical survey of colonized tiles placed in glass flasks together with a specimen of Nacella concinna exhibited between 5 and 30% removal of the biofilms coverage after 24 h of exposure to the limpet, suggesting that EPS and chrysolaminarin constitute a C-source for the gastropod.

Distribution of algae in the San Joaquin River, California, in relation to nutrient supply, salinity and other environmental factors

USGS Publications Warehouse

Leland, H.V.; Brown, L.R.; Mueller, D.K.

2001-01-01

1. The taxonomic composition and biomass of the phytoplankton and the taxonomic composition of the phytobenthos of the San Joaquin River and its major tributaries were examined in relation to water chemistry, habitat and flow regime. Agricultural drainage and subsurface flow contribute to a complex gradient of salinity and nutrients in this eutrophic, 'lowland type' river.2. Because of light-limiting conditions for growth, maintenance demands of the algae exceed production during summer and autumn in the San Joaquin River where there is no inflow from tributaries. In contrast to substantial gains in concentration of inorganic nitrogen and soluble reactive phosphorus during the summer of normal-flow years, net losses of algal biomass (2-4 ??g L-1 day-1 chlorophyll a) occurred in a mid-river segment with no significant tributary inflow. However, downstream of a large tributary draining the Sierra Nevada, a substantial net gain in algal biomass (6-11 μg L-1 day-1) occurred in the summer, but not in the spring (loss of 1-6 μg L-1 day-1) or autumn (loss of 2-5 ??g L-1 day-1).3. The phytoplankton was dominated in summer by 'r-selected' centric diatoms (Thalassiosirales), species both tolerant of variable salinity and widely distributed in the San Joaquin River. Pennate diatoms were proportionally more abundant (in biomass) in the winter, spring and autumn. Abundant taxa included the diatoms Cyclotella meneghiniana, Skeletonema cf. potamos, Cyclostephanos invisitatus, Thalassiosira weissflogii, Nitzschia acicularis, N. palea and N. reversa, and the chlorophytes Chlamydomonas sp. and Scenesdesmus quadricauda. Patterns in the abundance of species indicated that assembly of the phytoplankton is limited more by light and flow regime than by nutrient supply.4. The phytobenthos was dominated by larger, more slowly reproducing pennate diatoms. Few of the abundant species are euryhaline. The diatoms Navicula recens and Nitzschia inconspicua and cyanophytes, Oscillatoria spp., were the principal late-summer benthic species upstream in the mainstem and in drainages of the San Joaquin Valley. Many of the other abundant diatoms (Amphora veneta, Bacillaria paxillifer, Navicula symmetrica, Nitzschia amphibia, N. fonticola, N. palea, Pleurosigma salinarum) of late-summer assemblages in these segments also are motile species. While many of these species also were abundant in segments downstream of confluences with rivers draining the Sierra Nevada, the relative abundance of prostrate (Cocconeis placentula var. euglypta, Navicula minima) and erect or stalked (Achnanthidium deflexum, Achnanthes lanceolata, Gomphonema kobayasii, G. parvulum var. lagenula) diatoms and Stigeoclonium sp. was greater in these lower San Joaquin River segments.5. A weighted-averaging regression model, based on salinity and benthic-algal abundance in the San Joaquin River and segments of its major tributaries within the San Joaquin Valley, yielded a highly significant coefficient-of-determination (r2 = 0.84) and low prediction error between salinity inferred from the species and that observed, indicating that salinity tolerance is a primary constraint on growth and assembly of the phytobenthos. The same measures of predictability indicated poor performance of a model based on inorganic nitrogen. However, with a greater representation of tributaries (including segments within the Sierra Nevada foothills) in the sample set, an inorganic nitrogen model also yielded a highly significant coefficient-of-determination (r2 = 0.87) and low prediction error between the species-inferred and the observed concentration. As with the salinity model (r2 = 0.94) for the enlarged data set, a systematic difference (increased deviation of residuals) existed at high inorganic nitrogen concentrations. These results indicate substantial interaction between salinity and inorganic nitrogen as constraints on the structure of benthic-algal communities of the San Joaquin River basin.

Diatoms as Proxies for a Fluctuating Ice Cap Margin, Hvitarvatn, Iceland

NASA Astrophysics Data System (ADS)

Black, J. L.; Miller, G. H.; Geirsdottir, A.

2005-12-01

There are no complete records of terrestrial environmental change for the Holocene (11,000yrs) in Iceland and the status of Icelandic glaciers in the early Holocene remains unclear. It is not even known whether Iceland's large ice caps disappeared in the early Holocene, and if they did, when they re-grew. Icelandic lakes are particularly well suited to address these uncertainties as: 1) Glacial erosion and soft bedrock result in high lacustrine sedimentation rates, 2) Diagnostic tephras aid the geochronology, 3) Iceland's sensitivity to changes in North Atlantic circulation should produce clear signals in key environmental proxies (diatoms) preserved in lacustrine sequences, and 4) Ice-cap profiles are relatively flat so small changes in the equilibrium line altitude result in large changes in accumulation area. Hence, large changes in ice-sheet margins during the Holocene will impact sedimentation in glacier-dominated lakes and the diatom assemblages at those times. Hvitarvatn is a glacier dominated lake located on the eastern margin of Langjokull Ice Cap in central-western Iceland. The uppermost Hvitarvatn sediments reflect a glacially dominated system with planktonic, silica-demanding diatom taxa that suggest a high dissolved silica and turbid water environment consistent with high fluxes of glacial flour. Below this are Neoglacial sediments deposited when Langjokull was active, but outlet glaciers were not in contact with Hvitarvatn. The diatom assemblage here shows a small increase in abundance, but is still dominated by planktic, silica-demanding taxa. A distinct shift in lake conditions is reflected in the lowermost sediments, composed of predominantly benthic diatoms and deposited in clear water conditions with long growing seasons likely found in an environment with warmer summers than present and with no glacial erosion. Langjokull must have disappeared in the early Holocene for such a diverse, benthic dominated diatom assemblage to flourish.

Determining diatom ecotones and their relationship to terrestrial ecoregion designations in the central Canadian Arctic Islands.

PubMed

Antoniades, Dermot; Douglas, Marianne S V; Michelutti, Neal; Smol, John P

2014-08-01

Ecotones are key areas for the detection of global change because many are predicted to move with shifts in climate. Prince of Wales Island, in the Canadian Arctic Archipelago, spans the transition between mid- to high-Arctic ecoregions. We analyzed limnological variables and recent diatom assemblages from its lakes and ponds to determine if assemblages reflected this ecotone. Limnological gradients were short, and water chemistry explained 20.0% of diatom variance in a redundancy analysis (RDA), driven primarily by dissolved organic carbon, Ca and SO4 . Most taxa were small, benthic forms; key taxa such as planktonic Cyclotella species were restricted to the warmer, southern portion of the study area, while benthic Staurosirella were associated with larger, ice-dominated lakes. Nonetheless, there were no significant changes in diatom assemblages across the mid- to high-Arctic ecoregion boundary. We combined our data set with one from nearby Cornwallis Island to expand the study area and lengthen its environmental gradients. Within this expanded data set, 40.6% of the diatom variance was explained by a combination of water chemistry and geographic variables, and significant relationships were revealed between diatom distributions and key limnological variables, including pH, specific conductivity, and chl-a. Using principal coordinates analysis, we estimated community turnover with latitude and applied piecewise linear regression to determine diatom ecotone positions. A pronounced transition was present between Prince of Wales Island and the colder, more northerly Cornwallis Island. These data will be important in detecting any future northward ecotone movement in response to predicted Arctic climate warming in this highly sensitive region. © 2014 Phycological Society of America.

Community composition, distribution, and contribution of microbenthos in offshore sediments from the Yellow Sea

NASA Astrophysics Data System (ADS)

Meng, Zhaocui; Xu, Kuidong; Lei, Yanli

2011-09-01

We investigated the spatial distribution and composition of microbenthos in the seafloor sediments from 48 stations in the Yellow Sea using epifluorescence microscopy and quantitative protargol staining techniques. The bacterial abundance ranged from 2.4×10 8 to 1.9×10 9 cells cm -3 in the wet sediment, about three orders of magnitude higher than that of phototrophic (PNFs, from 6.4×10 5 to 8.8×10 6 cells cm -3) and heterotrophic nanoflagellates (HNFs, from 5.8×10 4 to 5.9×10 6 cells cm -3) and four orders of magnitude higher than that of cyanobacteria (from 2.3×10 4 to 2.3×10 6 cells cm -3) in the upper 5 cm of sediments. The abundance of diatoms varied greatly, from 3-1.1×10 5 cells cm -3 in the upper 8 cm of sediments, whereas those of heterotrophic microflagellates (HMFs, 1-182 cells cm -3) and ciliates (1-221 cells cm -3) were less varied and lower. The biomass partitioning indicates the primary importance of benthic bacteria (50.3 μg C cm -3 on average), followed by PNFs (40.7 μg C cm -3), HNFs (19.3 μg C cm -3), and finally by cyanobacteria (8.8 μg C cm -3). Benthic diatoms (0.8 μg C cm -3), ciliates (0.15 μg C cm -3), and HMFs (0.03 μg C cm -3) contribute relatively small fractions to the total biomass of the microbenthos. About 95% of diatoms, 77% of ciliates, and 56% of HMFs were distributed in the upper 2 cm of sediments, whereas no distinct vertical distributions were observed for bacteria, cyanobacteria, PNFs, and HNFs. The microbenthos are quantitatively important in the shallow seafloor, wherein their main components have an average abundance three orders of magnitude higher than the corresponding planktonic organisms in the same sea area. Our estimates indicate that pico-sized phytobenthos might contribute a large proportion to the primary production. Benthic ciliates and heterotrophic flagellates contribute about 90% to the estimated combined metabolic rate of micro- and meiobenthic consumers in the whole sea area, with nanoheterotrophs accounting for the majority. The data suggest the potential for the rapid primary and secondary production of microbenthos and detrital utilization in the shallow seafloor sediments of the Yellow Sea.

Methane seep events of the southern Joetsu Knoll since middle Pleistocene based on benthic foraminifera

NASA Astrophysics Data System (ADS)

Oi, T.; Akiba, F.; Matsumoto, R.; Kakuwa, Y.

2016-12-01

Gas hydrates were collected at several sites off Joetsu which presented anomalous seismic structures. "Gas chimneys", major host structures for shallow gas hydrates, were recognized ROV off Joetsu in eastern margin of the Japan Sea, as were a number of active methane seeps. The assemblage components and carbon isotope of benthic foraminifera, which are ubiquitous in global marine settings, can indicate methane seep environments (Akimoto et al., 1994; Bhaumik and Gupta, 2007). Preliminary work by Oi et al. (2015) documented the obvious occurrences of methane related foraminifera, Rutherfordoides sp., in three core sediments recovered from Umitaka Spur, west Oki Trough and north Mogami Trough in the eastern margin of the Japan Sea, and found them to comprise the early part of the MIS 2, calculated to 28-25ka. These records suggest that active methane seep events might occur at the same time during early MIS 2, but were confined within the last 100ka. In this study, we analyzed benthic foraminiferal fossils from drilling core J04RB (core length 122 m; one of the gas hydrate bearing sites at a southern part of the Joetsu Knoll) in order to document methane seep events during the last 500ka. Firstly, we estimated sedimentation ages from diatom biostratigraphy and identification of Aso-1 tephra. Based on diatom components, we recognized a boundary between NPD (Neogene North Pacific diatom Zonations) 12 and NPD11, estimated at 300 ka (MIS8/9; Yanagisawa and Akiba, 1998). The bottom age was estimated to almost 530-560 ka (around MIS14) especially from the alternation with warm and cold diatom zones (Akiba et al., 2014). Secondary, we could suppose the paleoenvironments from benthic foraminifera as below. 1. The rare benthic foraminifera during the cold stages (MIS8, MIS10, and MIS12) indicate anoxic bottom conditions characteristic of falling sea level, just as with MIS 2. 2. We recognized the continuous distributions of tiny methane related specimens of Rutherfordoides sp. during MIS10. In order to confirm new records of active methane seep events in the Joetsu Knoll, we need to measure isotope records of this species. This study was conducted under the commission from AIST as a part of the methane hydrate research project of METI (the Ministry of Economy, Trade and Industry, Japan).

Benthic Foraminifera, Food in the Deep Sea, and Limits to Bentho-Pelagic Coupling

NASA Astrophysics Data System (ADS)

Thomas, E.; Boscolo-Galazzo, F.; Arreguin-Rodrigu, G. J.; Ortiz, S.; Alegret, L.

2015-12-01

The deep-sea is the largest habitat on Earth, contains highly diverse biota, but is very little known. Many of its abundant benthic biota (e.g., nematodes) are not preserved in the fossil record. Calcareous and agglutinated benthic foraminifera (unicellular eukaryotes, Rhizaria; efficient dispersers) and ostracodes (Animalia, Crustacea; non-efficient dispersers) are the most common organisms providing a fossil record of deep-sea environments. Very little food is supplied to the deep-sea, because organic matter produced by photosynthesis is largely degraded before it arrives at the seafloor. Only a few % of organic matter is carried to the ocean bottom by 'marine snow', with its particle size and behavior in the water column controlled by surface ecosystem structure, including type of dominant primary producers (diatoms, cyanobacteria). Food supply and its seasonality are generally seen as the dominant control on benthic assemblages (combined with oxygenation), providing bentho-pelagic coupling between primary and benthic productivity. Benthic foraminiferal assemblages (composition and density) thus are used widely to estimate past productivity, especially during episodes of global climate change, ocean acidification, and mass extinction of primary producers. We show that some environmental circumstances may result in interrupting bentho-pelagic coupling, e.g. through lateral supply of organic matter along continental margins (adding more refractory organic matter), through trophic focusing and/or fine particle winnowing on seamounts (giving an advantage to suspension feeders), and through carbonate undersaturation (giving advantage to infaunal over epifaunal calcifyers). In addition, increased remineralization of organic matter combined with increased metabolic rates may cause assemblages to reflect more oligotrophic conditions at stable primary productivity during periods of global warming. As a result, benthic foraminiferal accumulation rates must be carefully evaluated before use as proxies for primary productivity.

Toxic Diatom Aldehydes Affect Defence Gene Networks in Sea Urchins

PubMed Central

Varrella, Stefano; Ruocco, Nadia; Ianora, Adrianna; Bentley, Matt G.; Costantini, Maria

2016-01-01

Marine organisms possess a series of cellular strategies to counteract the negative effects of toxic compounds, including the massive reorganization of gene expression networks. Here we report the modulated dose-dependent response of activated genes by diatom polyunsaturated aldehydes (PUAs) in the sea urchin Paracentrotus lividus. PUAs are secondary metabolites deriving from the oxidation of fatty acids, inducing deleterious effects on the reproduction and development of planktonic and benthic organisms that feed on these unicellular algae and with anti-cancer activity. Our previous results showed that PUAs target several genes, implicated in different functional processes in this sea urchin. Using interactomic Ingenuity Pathway Analysis we now show that the genes targeted by PUAs are correlated with four HUB genes, NF-κB, p53, δ-2-catenin and HIF1A, which have not been previously reported for P. lividus. We propose a working model describing hypothetical pathways potentially involved in toxic aldehyde stress response in sea urchins. This represents the first report on gene networks affected by PUAs, opening new perspectives in understanding the cellular mechanisms underlying the response of benthic organisms to diatom exposure. PMID:26914213

Using Bioassays and Species Sensitivity Distributions to Assess Herbicide Toxicity towards Benthic Diatoms

PubMed Central

Larras, Floriane; Bouchez, Agnès; Rimet, Frédéric; Montuelle, Bernard

2012-01-01

Although benthic diatoms are widely used in ecological studies of aquatic systems, there is still a dearth of data concerning species sensitivities towards several contaminants. Within the same community, different species may respond differently depending on their physiological and ecological characteristics. This lack of knowledge makes specific appropriate risk assessment impossible. To find out whether species sensitivity distribution (SSD) could be used to estimate the risk of herbicide toxicity for diatoms, we need to know whether their sensitivity depends on their physiological and ecological characteristics. We carried out single-species bioassays on 11 diatom species exposed to 8 herbicides. Dose-responses relationships were used to extrapolate the Effective Concentration 5 (EC5) and the Effective Concentration 50 (EC50) for each exposure. These data were used to fit a SSD curve for each herbicide, and to determine the Hazardous concentration 5 (HC5) and 50 (HC50). Our results revealed a high level of variability of the sensitivity in the set of species tested. For photosystem-II inhibitor (PSII) herbicides, diatoms species displayed a typical grouping of sensitivity levels consistent with their trophic mode and their ecological guild. N-heterotroph and “motile” guild species were more tolerant of PSII inhibitors, while N-autotroph and “low profile” guild species were more sensitive. Comprehensive SSD curves were obtained for 5 herbicides, but not for sulfonylurea herbicides or for dimetachlor, which had toxicity levels that were below the range of concentration tested. The SSD curves provided the following ranking of toxicity: diuron> terbutryn> isoproturon> atrazine> metolachlor. The HC that affected 5% of the species revealed that, even at the usual environmental concentrations of herbicides, diatom assemblages could be affected, especially by isoproturon, terbutryn, and diuron. PMID:22952981

Dietary bioavailability of Cu adsorbed to colloidal hydrous ferric oxide

USGS Publications Warehouse

Cain, Daniel J.; Croteau, Marie-Noële; Fuller, Christopher C.

2013-01-01

The dietary bioavailability of copper (Cu) adsorbed to synthetic colloidal hydrous ferric oxide (HFO) was evaluated from the assimilation of 65Cu by two benthic grazers, a gastropod and a larval mayfly. HFO was synthesized, labeled with 65Cu to achieve a Cu/Fe ratio comparable to that determined in naturally formed HFO, and then aged. The labeled colloids were mixed with a food source (the diatom Nitzschia palea) to yield dietary 65Cu concentrations ranging from 211 to 2204 nmol/g (dry weight). Animals were pulse fed the contaminated diet and assimilation of 65Cu from HFO was determined following 1–3 days of depuration. Mass transfer of 65Cu from HFO to the diatom was less than 1%, indicating that HFO was the source of 65Cu to the grazers. Estimates of assimilation efficiency indicated that the majority of Cu ingested as HFO was assimilated (values >70%), implying that colloidal HFO potentially represents a source of dietary Cu to benthic grazers, especially where there is active formation and infiltration of these particles into benthic substrates.

Diatom paleoecology Pass Key core 37, Everglades National Park, Florida Bay

USGS Publications Warehouse

Pyle, Laura; Cooper, S.R.; Huvane, J.K.

1998-01-01

During the 20th century, there have been large-scale anthropogenic modifications to the South Florida ecosystem. The effects of these changes on Florida Bay and its biological communities are currently of political and scientific interest. This study is part of a larger effort to reconstruct the history of environmental changes in the bay, using paleoecological techniques. We are using diatom indicators preserved in Florida Bay sediments to infer long-term water quality, productivity, nutrient, and salinity changes. We are also obtaining information concerning the natural variability of the ecosystem. Diatoms are microscopic algae, the remains of which are generally well preserved in sediments, and their distributions are closely linked to water quality. Diatoms were extracted from a 70-cm sediment core collected from the Pass Key mudbank of Florida Bay by the U.S. Geological Survey. Between 300-500 diatom valves from each of 15 core samples were identified and counted. Estimates of absolute abundance, species richness, Shannon-Wiener diversity, and centric:pennate ratios were calculated for each sample that was counted. Information on the ecology of the diatom species is presented, and changes in diatom community composition are evaluated. Samples contained an average of four million diatom valves per gram of sediment. Major changes in the diatom community are evident down core. These include increases in the percent abundance of marine diatoms in the time period represented by the core, probably the result of increasing salinity at Pass Key. Benthic diatoms become less abundant in the top half of the core. This may be related to a number of factors including the die-off of sea grass beds or increased turbidity of the water column. Once the chronology of the Pass Key core 37 is established, these down-core changes can be related to historical events and compared with other indicators in the sedimentary record that are currently being investigated by U.S Geological Survey researchers. This report is preliminary and has not been reviewed for conformity with U.S. Geological Survey editorial standards or with the North American Stratigraphic Code. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Deposits of the 1983 and 1993 tsunamis on the coast of Primorye

NASA Astrophysics Data System (ADS)

Ganzey, L. A.; Razjigaeva, N. G.; Nishimura, Yu.; Grebennikova, T. A.; Gorbunov, A. O.; Kaistrenko, V. M.; Naumov, Yu. A.; Lebedev, I. I.

2017-07-01

Deposits of the two strongest tsunamis of the 20th century have been found on the eastern coast of Primorye. The tsunamis had epicenters in the Sea of Japan west of the coast of Hokkaido. The distribution and preservation of deposits in bays of different geomorphological structure have been analyzed. The best defined sedimentary covers occur in the upper part of sections in low-lying areas of bay shores, where the wave runup was more than 3 m. The best preserved deposits have been observed in bays attributed to loworder streams. Variations of the structural composition of tsunami deposits formed by traction processes associated with the tsunamis have been analyzed depending on distance from the shoreline; the sources of material have been identified. Tsunami waves transported sand not only from beaches, ancient storm ridges, and terraces, but also from the underwater coastal slope; waves also grabbed material from estuarine lagoons and lakes located in the shore inundation zone. Deposits include marine diatoms with dominant sublittoral planktonic and benthic species, which suggests that the material was transported from a depth no more than 15 m. Deep-sea species of diatoms and their fragments have been encountered. Among freshwater diatoms are species with different ecological identities, indicating erosion and redeposition of material transported from various sources.

Distribution patterns of phytoplankton in the Changjiang River estuary and adjacent waters in spring 2009

NASA Astrophysics Data System (ADS)

Kong, Fanzhou; Xu, Zijun; Yu, Rencheng; Yuan, Yongquan; Zhou, Mingjiang

2016-09-01

The Changjiang River estuary and adjacent waters are one of the most notable regions for red tides/harmful algal blooms in China's coastal waters. In this study, phytoplankton samples were collected and analyzed during the outbreak stage of red tides in May 2009. It was found that dinoflagellates, Prorocentrum donghaiense and Karenia mikimotoi, and diatoms, Skeletonema spp. and Paralia sulcata, were the major taxa dominating the phytoplankton community. Cluster analysis, non-metric multidimensional scaling (NMDS) and analysis of similarities (ANOSIM) was conducted on a data matrix including taxa composition and cell abundance of the phytoplankton samples. The analyses categorized the samples into three groups at a similarity level of 30%. Group I was characterized by estuarine diatoms and distributed mainly in the highly turbid estuarine region. Group II, which was dominated by the diatom Skeletonema spp. and represented the red tide of Skeletonema spp., was situated around Group I in the sea area west of 122°50'E. Group III was characterized by a high proportion of dinoflagellates and was found further offshore compared with Groups I and II. Group III was further divided into two subgroups (III-S1 and III-S2) at a similarity level of 40%. Group III-S1 was characterized by the presence of the benthic diatom P. sulcata, representing phytoplankton samples collected either from the bottom or from the sea area affected by upwelling. Group III-S2 was dominated by dinoflagellates and represented red tides formed by P. donghaiense and K. mikimotoi. A gradual change of red-tide causative species was observed from the estuary to the offshore sea area, from diatoms to armored dinoflagellates and then unarmored dinoflagellates. Environmental factors associated with each group, and thus affecting the distribution of phytoplankton and red tides, are discussed.

Spatial changes in fatty acids signatures of the great scallop Pecten maximus across the Bay of Biscay continental shelf

NASA Astrophysics Data System (ADS)

Nerot, Caroline; Meziane, Tarik; Schaal, Gauthier; Grall, Jacques; Lorrain, Anne; Paulet, Yves-Marie; Kraffe, Edouard

2015-10-01

The spatial variability of food resources along continental margins can strongly influence the physiology and ecology of benthic bivalves. We explored the variability of food sources of the great scallop Pecten maximus, by determining their fatty acid (FA) composition along an inshore-offshore gradient in the Bay of Biscay (from 15 to 190 m depth). The FA composition of the digestive gland showed strong differences between shallow and deep-water habitats. This trend was mainly driven by their content in diatom-characteristic fatty acids, which are abundant near the coast. Scallops collected from the middle of the continental shelf were characterized by higher contents of flagellate markers than scallops from shallow habitats. This could be related to a permanent vertical stratification in the water column, which reduced vertical mixing of waters, thereby enhancing organic matter recycling through the microbial loop. In the deeper water station (190 m), FA compositions were close to the compositions found in scallops from shallow areas, which suggest that scallops could have access to the same resources (i.e. diatoms). Muscle FA composition was more indicative of the physiological state of scallops over this depth range, revealing contrasting reproductive strategies among the two coastal sites and metabolic or physiological adaptation at greater depth (e.g. structural and functional adjustments of membrane composition). This study therefore revealed contrasted patterns between shallow and deeper habitats for both P. maximus muscle and digestive gland tissues. This emphasizes the variability in the diet of this species along its distribution range, and stresses the importance of analyzing different tissues for their FA composition in order to better understand their physiology and ecology.

Influence of Didymosphenia geminata blooms on prey composition and associated diet and growth of Brown Trout

USGS Publications Warehouse

James, Daniel A.; Chipps, Steven R.

2016-01-01

We compared diet, stomach fullness, condition, and growth of Brown Trout Salmo trutta among streams with or without blooms of the benthic diatom Didymosphenia geminata in the Black Hills, South Dakota. In Rapid Creek, where D. geminata blooms covered ∼30% of the stream bottom, Brown Trout consumed fewer ephemeropterans (6–8% by weight) than individuals from two stream sections that have not had D. geminatablooms (Castle and Spearfish creeks; 13–39% by weight). In contrast, dipterans (primarily Chironomidae) represented a larger percentage of Brown Trout diets from Rapid Creek (D. geminata blooms present; 16–28% dry weight) compared with diets of trout from streams without D. geminata blooms (6–19% dry weight). Diets of small Brown Trout (100–199 mm TL) reflected the invertebrate species composition in benthic stream samples; in Rapid Creek, ephemeropterans were less abundant whereas dipterans were more abundant than in streams without D. geminata blooms. Stomach fullness and condition of Brown Trout from Rapid Creek were generally greater than those of Brown Trout from other populations. Linkages among invertebrate availability, diet composition, and condition of Brown Trout support the hypothesis that changes in invertebrate assemblages associated with D. geminata (i.e., more Chironomidae) could be contributing to high recruitment success for small Brown Trout in Rapid Creek.

Diatom diversity and response in metal-polluted river environment: preliminary reports from Gromolo Torrent (Liguria, Italy)

NASA Astrophysics Data System (ADS)

Capello, Marco; Tolotti, Raffaella; Bernabè, Dimitri; Carbone, Cristina; Consani, Sirio; Vagge, Greta; Cutroneo, Laura

2016-04-01

Mineral content and physico-chemical properties of the freshwaters are the main factors affecting both algal assemblages and distributions, while presence of dissolved silicon, low water conductivity, and rocky-mountain habitats host benthic diatom assemblages of high species richness. It is shown that diatoms are sensible to the freshwater acidification (used as pH indicators in acid waters), environmental and climate changes, river organic load, and heavy metal water pollution. For this characteristic, diatoms are among the major biological markers for a variety of environmental and stratigraphic applications. In particular, qualitative and quantitative analyses (assemblage analyses) together with biotic indices as well as morphological and ultrastructure parameterisation provide tools for detailed environmental control and paleo-environmental reconstructions. Severe environmental problems are typically caused by "abandoned mine" and are consequences of the cessation of the mining activity with a lack in infrastructure maintenance. The mine waters which flow into the Gromolo Torrent are almost acidic (pH varying from 2.4 to 5) and enriched in heavy metals and SO42-. This pollution is caused by Acid Mine Drainage (AMD) processes that interest the Libiola mining area, known as a typical example of active AMD processes. The aim of this work is: 1) to characterise the local benthic diatom assemblages along the acidic mine effluents that discharge from Libiola mine, the entire Gromolo torrent course, and in the marine area off the torrent mouth; 2) to identify the main diatom biomarker taxa; 3) to highlight striking situations of equilibrium-disequilibrium in the algal communities, and 4) to point out types and frequency of some teratologies affecting specific diatom taxa as a response to environmental stressors (such as metal-metalloid enrichment). A total of 17 diatom samples was collected and examined, including some marine samples. Diatoms were collected in the riverbed from the hard surface of selected cobblestone by scraping. In laboratory all the samples were washed (by digestion with hydrogen peroxide) and mounted according to the protocol used by the DISTAV Laboratories (University of Genoa). Identification and enumeration of diatom valves was performed using an LM Reichert Jung-Polyvar microscope with 1000x oil-immersion lens. Moreover, a representative subsample of each preparation was observed using SEM images providing an interesting iconographic dataset. Preliminary results show that diatom assemblages are characteristic (in both quality and quantity) in the three different environmental conditions highlighted: a) in AMD environment diatoms are quantitatively scarcely, represented by both typically pioneer and highly tolerant species; b) in the Gromolo torrent diatoms are well represented with fairly well-structured communities, but present specific types and different frequencies in teratological frustula, whereas c) in marine environment they are very poorly represented.

Mussel beds are biological power stations on intertidal flats

NASA Astrophysics Data System (ADS)

Engel, Friederike G.; Alegria, Javier; Andriana, Rosyta; Donadi, Serena; Gusmao, Joao B.; van Leeuwe, Maria A.; Matthiessen, Birte; Eriksson, Britas Klemens

2017-05-01

Intertidal flats are highly productive areas that support large numbers of invertebrates, fish, and birds. Benthic diatoms are essential for the function of tidal flats. They fuel the benthic food web by forming a thin photosynthesizing compartment in the top-layer of the sediment that stretches over the vast sediment flats during low tide. However, the abundance and function of the diatom film is not homogenously distributed. Recently, we have realized the importance of bivalve reefs for structuring intertidal ecosystems; by creating structures on the intertidal flats they provide habitat, reduce hydrodynamic stress and modify the surrounding sediment conditions, which promote the abundance of associated organisms. Accordingly, field studies show that high chlorophyll a concentration in the sediment co-vary with the presence of mussel beds. Here we present conclusive evidence by a manipulative experiment that mussels increase the local biomass of benthic microalgae; and relate this to increasing biomass of microalgae as well as productivity of the biofilm across a nearby mussel bed. Our results show that the ecosystem engineering properties of mussel beds transform them into hot spots for primary production on tidal flats, highlighting the importance of biological control of sedimentary systems.

Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake

PubMed Central

Hawes, Ian; Mackey, Tyler J.; Krusor, Megan; Doran, Peter T.; Sumner, Dawn Y.; Eisen, Jonathan A.; Hillman, Colin; Goroncy, Alexander K.

2015-01-01

Lake Fryxell is a perennially ice-covered lake in the McMurdo Dry Valleys, Antarctica, with a sharp oxycline in a water column that is density stabilized by a gradient in salt concentration. Dissolved oxygen falls from 20 mg liter−1 to undetectable over one vertical meter from 8.9- to 9.9-m depth. We provide the first description of the benthic mat community that falls within this oxygen gradient on the sloping floor of the lake, using a combination of micro- and macroscopic morphological descriptions, pigment analysis, and 16S rRNA gene bacterial community analysis. Our work focused on three macroscopic mat morphologies that were associated with different parts of the oxygen gradient: (i) “cuspate pinnacles” in the upper hyperoxic zone, which displayed complex topography and were dominated by phycoerythrin-rich cyanobacteria attributable to the genus Leptolyngbya and a diverse but sparse assemblage of pennate diatoms; (ii) a less topographically complex “ridge-pit” mat located immediately above the oxic-anoxic transition containing Leptolyngbya and an increasing abundance of diatoms; and (iii) flat prostrate mats in the upper anoxic zone, dominated by a green cyanobacterium phylogenetically identified as Phormidium pseudopriestleyi and a single diatom, Diadesmis contenta. Zonation of bacteria was by lake depth and by depth into individual mats. Deeper mats had higher abundances of bacteriochlorophylls and anoxygenic phototrophs, including Chlorobi and Chloroflexi. This suggests that microbial communities form assemblages specific to niche-like locations. Mat morphologies, underpinned by cyanobacterial and diatom composition, are the result of local habitat conditions likely defined by irradiance and oxygen and sulfide concentrations. PMID:26567300

A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta

PubMed Central

Moeys, Sara; Frenkel, Johannes; Lembke, Christine; Gillard, Jeroen T. F.; Devos, Valerie; Van den Berge, Koen; Bouillon, Barbara; Huysman, Marie J. J.; De Decker, Sam; Scharf, Julia; Bones, Atle; Brembu, Tore; Winge, Per; Sabbe, Koen; Vuylsteke, Marnik; Clement, Lieven; De Veylder, Lieven; Pohnert, Georg; Vyverman, Wim

2016-01-01

Although sexual reproduction is believed to play a major role in the high diversification rates and species richness of diatoms, a mechanistic understanding of diatom life cycle control is virtually lacking. Diatom sexual signalling is controlled by a complex, yet largely unknown, pheromone system. Here, a sex-inducing pheromone (SIP+) of the benthic pennate diatom Seminavis robusta was identified by comparative metabolomics, subsequently purified, and physicochemically characterized. Transcriptome analysis revealed that SIP+ triggers the switch from mitosis-to-meiosis in the opposing mating type, coupled with the transcriptional induction of proline biosynthesis genes, and the release of the proline-derived attraction pheromone. The induction of cell cycle arrest by a pheromone, chemically distinct from the one used to attract the opposite mating type, highlights the existence of a sophisticated mechanism to increase chances of mate finding, while keeping the metabolic losses associated with the release of an attraction pheromone to a minimum. PMID:26786712

Disentangling diatom species complexes: does morphometry suffice?

PubMed Central

Borrego-Ramos, María; Olenici, Adriana

2017-01-01

Accurate taxonomic resolution in light microscopy analyses of microalgae is essential to achieve high quality, comparable results in both floristic analyses and biomonitoring studies. A number of closely related diatom taxa have been detected to date co-occurring within benthic diatom assemblages, sharing many morphological, morphometrical and ecological characteristics. In this contribution, we analysed the hypothesis that, where a large sample size (number of individuals) is available, common morphometrical parameters (valve length, width and stria density) are sufficient to achieve a correct identification to the species level. We focused on some common diatom taxa belonging to the genus Gomphonema. More than 400 valves and frustules were photographed in valve view and measured using Fiji software. Several statistical tools (mixture and discriminant analysis, k-means clustering, classification trees, etc.) were explored to test whether mere morphometry, independently of other valve features, leads to correct identifications, when compared to identifications made by experts. In view of the results obtained, morphometry-based determination in diatom taxonomy is discouraged. PMID:29250472

Diatom-inferred Holocene record of moisture variability in Lower Bear Lake, San Bernardino Mountains, California, USA

NASA Astrophysics Data System (ADS)

Starratt, S.; Kirby, M. E.

2014-12-01

Although Holocene diatom records from southern California lakes have been difficult to obtain, diatoms have been found in Lower Bear Lake (LBL) sediments, providing a 9200-year hydroclimatological record for the San Bernardino Mountains. Based on several physical and chemical properties as well as gastropod and ostracod assemblages. Kirby et al. (2012, QSR,46:57-65) inferred nine decadal to multi-centennial pluvial episodes (five major (PE-V to PE-I), four minor (PE-IIIa-c, PE-IIa) in sediment core BBLVC05-1 (34o15'20" N, 116o55'20" W; 4.5 m long). Here, we consider the implications of this new diatom data. The diatom record shows a gradual increase in salinity during the Holocene, corroborating the inference of decreasing lake size made by Kirby et al. (2012). The longest pluvial (PE-V; 9170?-8250 cal yr BP), is dominated by small fragilaroid taxa, indicating fresh, slightly alkaline waters. An increase in halophilic taxa at ~8700 cal yr BP suggests a several-decades-long drier interval within the pluvial. PE-IV (7000-6400 cal yr BP) is dominated by benthic taxa, including relatively high numbers of epiphytic taxa, indicating an increase in aquatic macrophytes. The abundance of Aulacoseira in PE-IV and PE-III (3350-3000 cal yr BP) suggests increased turbulence due to increased storminess. PE-III and PE-II (850-700 cal yr BP) contain greater abundances of benthic (epiphytic) and halophilic species, although the latter never dominate the assemblage. PE-I (500-476 cal yr BP) was not sampled. Aerophilic taxa comprise up to 3% of the assemblage during pluvial events suggesting increased erosion during those periods and the presence of symbiotic species throughout the record indicates nitrogen-depleted waters. The diatom data generally support the occurrence of multiple pluvials over the Holocene with the most sustained occurring in the early Holocene. Furthermore, the diatom data suggest LBL likely diminished in size through the Holocene becoming more saline in the late Holocene. This decrease in size may have been a response to an insolation-forced decrease in winter season precipitation with a negligible contribution from the North American Monsoon.

Variability in Lotic Communities in Three Contrasting Stream Environments in the Santa Ana River Basin, California, 1999-2001

USGS Publications Warehouse

Burton, Carmen A.

2008-01-01

Biotic communities and environmental conditions can be highly variable between natural ecosystems. The variability of natural assemblages should be considered in the interpretation of any ecological study when samples are either spatially or temporally distributed. Little is known about biotic variability in the Santa Ana River Basin. In this report, the lotic community and habitat assessment data from ecological studies done as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) program are used for a preliminary assessment of variability in the Santa Ana Basin. Habitat was assessed, and benthic algae, benthic macroinvertebrate, and fish samples were collected at four sites during 1999-2001. Three of these sites were sampled all three years. One of these sites is located in the San Bernardino Mountains, and the other two sites are located in the alluvial basin. Analysis of variance determined that the three sites with multiyear data were significantly different for 41 benthic algae metrics and 65 macroinvertebrate metrics and fish communities. Coefficients of variation (CVs) were calculated for the habitat measurements, metrics of benthic algae, and macroinvertebrate data as measures of variability. Annual variability of habitat data was generally greater at the mountain site than at the basin sites. The mountain site had higher CVs for water temperature, depth, velocity, canopy angle, streambed substrate, and most water-quality variables. In general, CVs of most benthic algae metrics calculated from the richest-targeted habitat (RTH) samples were greater at the mountain site. In contrast, CVs of most benthic algae metrics calculated from depositional-targeted habitat (DTH) samples were lower at the mountain site. In general, CVs of macroinvertebrate metrics calculated from qualitative multihabitat (QMH) samples were lower at the mountain site. In contrast, CVs of many metrics calculated from RTH samples were greater at the mountain site than at one of the basin sites. Fish communities were more variable at the basin sites because more species were present at these sites. Annual variability of benthic algae metrics was related to annual variability in habitat variables. The CVs of benthic algae metrics related to the most CVs of habitat variables included QMH taxon richness, the RTH percentage richness, RTH abundance of tolerant taxa, RTH percentage richness of halophilic diatoms, RTH percentage abundance of sestonic diatoms, DTH percentage richness of nitrogen heterotrophic diatoms, and DTH pollution tolerance index. The CVs of macroinvertebrate metrics related to the most CVs of habitat variables included the RTH trichoptera, RTH EPT, RTH scraper richness, RTH nonchironomid dipteran abundance (in percent), and RTH EPA (U.S. Environmental Protection Agency) tolerance, which is based on abundance. Many of the CVs of habitat variables related to CVs of macroinvertebrate metrics were the same habitat variables that were related to the CVs of benthic algae metrics. On the basis of these results, annual variability may have a role in the relationship of benthic algae and macroinvertebrates assemblages with habitat and water quality in the Santa Ana Basin. This report provides valuable baseline data on the variability of biological communities in the Santa Ana Basin.

CONCORDANCE OF TAXONOMIC RICHNESS PATTERNS ACROSS MULTIPLE ASSEMBLAGES IN LAKES OF THE NORTHEASTERN UNITED STATES

EPA Science Inventory

We investigated the concordance of taxonomic richness patterns and their environmental correlates for assemblages of benthic macroinvertebrates, riparian birds, sedimentary diatoms, fish, planktonic crustaceans, and planktonic rotifers in 186 northeastern U.S. lakes. Taxon counts...

Contribution of benthic microalgae to the temporal variation in phytoplankton assemblages in a macrotidal system.

PubMed

Hernández Fariñas, Tania; Ribeiro, Lourenço; Soudant, Dominique; Belin, Catherine; Bacher, Cédric; Lampert, Luis; Barillé, Laurent

2017-10-01

Suspended marine benthic microalgae in the water column reflect the close relationship between the benthic and pelagic components of coastal ecosystems. In this study, a 12-year phytoplankton time-series was used to investigate the contribution of benthic microalgae to the pelagic system at a site along the French-Atlantic coast. Furthermore, all taxa identified were allocated into different growth forms in order to study their seasonal patterns. The highest contribution of benthic microalgae was observed during the winter period, reaching up to 60% of the carbon biomass in the water column. The haptobenthic growth form showed the highest contribution in terms of biomass, dominant in the fall-winter period when the turbidity and the river flow were high. The epipelic growth form did not follow any seasonal pattern. The epiphytic diatom Licmophora was most commonly found during summer. As benthic microalgae were found in the water column throughout the year, the temporal variation detected in the structure of pelagic assemblages in a macrotidal ecosystem was partly derived from the differentiated contribution of several benthic growth forms. © 2017 Phycological Society of America.

[Ecological characteristic of benthic epipelic algae and the characteristic of water environment quality in heavily polluted river in city].

PubMed

Zhao, Zhen-hua; Ruan, Xiao-hong; Xing, Ya-nan; Ni, Li-xiao; Gao, Li-cun

2009-12-01

The water quality and algae community of Nanyuan Water System in the old city area of Suzhou were monitored for a year. Results showed that the water pollution in the studied area was mainly related to nitrogen (NH4+ -N and TN). Sometimes, they even exceeded the Environmental Quality Standards for Surface Water (GB 3838-2002, PRC) more than 5 times. 34 species of benthic epipelic algae were observed by microscope, and the species amount of diatom algae, green algae and blue algae are more than others. Their abundance and biomass are far higher than that of the pelagic algae in the same sites,and reach 2 145.5 x 10(4) cells/mL and 3.524 mg/mL,respectively. The dominant species of benthic epipelic algae in Nanyuan's water system are diatom algae and blue algae, most of which belong to the heterotrophic type or bi-trophic type algae, the typical genera include: Oscillaria amphibian (affiliated to Cyanophyta), Cyclotella sp., Melosira sp., Stephanodiscus hantzschii, Navicula sp., Nitzschia sp., Gomphonema (affiliated to Bacillariophyta) and so on. And their distribution of species and abundance are very nonuniform in different reach of heavily polluted city river, which relates to the pollutant characteristics of the river. The seasonal variety trend of the abundance for benthic algae showed that:summer > autumn > spring > winter, and that of biomass for benthic algae showed that: the biomass in winter is the most of four seasons and change extent of the biomass is not obvious in spring, summer and autumn. The research results can provide reference for the ecology restoration of city heavily polluted river.

Effect of water current on the distribution of polycyclic aromatic hydrocarbons, heavy metals and benthic diatom community in sediments of Haihe estuary, China.

PubMed

Yan, Jinxia; Liu, Jingling; Li, Yi; Lang, Sisi

2014-10-01

The pollution loads continuously increased in Haihe estuary, of Tianjin, China, due to intensive human activities, especially the construction of the Haihe Gate and Lingang Industrial Area. In 2011, hydrological variability in Haihe estuary was investigated and sediments were collected. Total organic carbon (TOC), particle size, total polycyclic aromatic hydrocarbons (ΣPAHs), heavy metals (Cd, Cr, Cu, Ni, Pb, and Zn), and benthic diatom community were analyzed. The highest concentrations of ΣPAHs and heavy metals were found near the Haihe Gate. The Shannon diversity index and the relative abundance of Coscinodiscus perforatus (RC) indicated a decreasing trend seaward. Results of Pearson correlation analysis illustrated significant relations between water current velocity and ΣPAHs (p < 0.01), Cr (p < 0.05), and RC (p < 0.05). Path analysis further indicated that water current played an important role in the distribution of PAH, Cr, and RC.

Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake.

PubMed

Jungblut, Anne D; Hawes, Ian; Mackey, Tyler J; Krusor, Megan; Doran, Peter T; Sumner, Dawn Y; Eisen, Jonathan A; Hillman, Colin; Goroncy, Alexander K

2016-01-15

Lake Fryxell is a perennially ice-covered lake in the McMurdo Dry Valleys, Antarctica, with a sharp oxycline in a water column that is density stabilized by a gradient in salt concentration. Dissolved oxygen falls from 20 mg liter(-1) to undetectable over one vertical meter from 8.9- to 9.9-m depth. We provide the first description of the benthic mat community that falls within this oxygen gradient on the sloping floor of the lake, using a combination of micro- and macroscopic morphological descriptions, pigment analysis, and 16S rRNA gene bacterial community analysis. Our work focused on three macroscopic mat morphologies that were associated with different parts of the oxygen gradient: (i) "cuspate pinnacles" in the upper hyperoxic zone, which displayed complex topography and were dominated by phycoerythrin-rich cyanobacteria attributable to the genus Leptolyngbya and a diverse but sparse assemblage of pennate diatoms; (ii) a less topographically complex "ridge-pit" mat located immediately above the oxic-anoxic transition containing Leptolyngbya and an increasing abundance of diatoms; and (iii) flat prostrate mats in the upper anoxic zone, dominated by a green cyanobacterium phylogenetically identified as Phormidium pseudopriestleyi and a single diatom, Diadesmis contenta. Zonation of bacteria was by lake depth and by depth into individual mats. Deeper mats had higher abundances of bacteriochlorophylls and anoxygenic phototrophs, including Chlorobi and Chloroflexi. This suggests that microbial communities form assemblages specific to niche-like locations. Mat morphologies, underpinned by cyanobacterial and diatom composition, are the result of local habitat conditions likely defined by irradiance and oxygen and sulfide concentrations. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Interactions between Benthic Copepods, Bacteria and Diatoms Promote Nitrogen Retention in Intertidal Marine Sediments

PubMed Central

Stock, Willem; Heylen, Kim; Sabbe, Koen; Willems, Anne; De Troch, Marleen

2014-01-01

The present study aims at evaluating the impact of diatoms and copepods on microbial processes mediating nitrate removal in fine-grained intertidal sediments. More specifically, we studied the interactions between copepods, diatoms and bacteria in relation to their effects on nitrate reduction and denitrification. Microcosms containing defaunated marine sediments were subjected to different treatments: an excess of nitrate, copepods, diatoms (Navicula sp.), a combination of copepods and diatoms, and spent medium from copepods. The microcosms were incubated for seven and a half days, after which nutrient concentrations and denitrification potential were measured. Ammonium concentrations were highest in the treatments with copepods or their spent medium, whilst denitrification potential was lowest in these treatments, suggesting that copepods enhance dissimilatory nitrate reduction to ammonium over denitrification. We hypothesize that this is an indirect effect, by providing extra carbon for the bacterial community through the copepods' excretion products, thus changing the C/N ratio in favour of dissimilatory nitrate reduction. Diatoms alone had no effect on the nitrogen fluxes, but they did enhance the effect of copepods, possibly by influencing the quantity and quality of the copepods' excretion products. Our results show that small-scale biological interactions between bacteria, copepods and diatoms can have an important impact on denitrification and hence sediment nitrogen fluxes. PMID:25360602

Effects of shelter and enrichment on the ecology and nutrient cycling of microbial communities of subtidal carbonate sediments.

PubMed

Forehead, Hugh I; Kendrick, Gary A; Thompson, Peter A

2012-04-01

The interactions between physical disturbances and biogeochemical cycling are fundamental to ecology. The benthic microbial community controls the major pathway of nutrient recycling in most shallow-water ecosystems. This community is strongly influenced by physical forcing and nutrient inputs. Our study tests the hypotheses that benthic microbial communities respond to shelter and enrichment with (1) increased biomass, (2) change in community composition and (3) increased uptake of inorganic nutrients from the water column. Replicate in situ plots were sheltered from physical disturbance and enriched with inorganic nutrients or left without additional nutrients. At t(0) and after 10 days, sediment-water fluxes of nutrients, O(2) and N(2) , were measured, the community was characterized with biomarkers. Autochthonous benthic microalgal (BMA) biomass increased 30% with shelter and a natural fivefold increase in nutrient concentration; biomass did not increase with greater enrichment. Diatoms remained the dominant taxon of BMA, suggesting that the sediments were not N or Si limited. Bacteria and other heterotrophic organisms increased with enrichment and shelter. Daily exchanges of inorganic nutrients between sediments and the water column did not change in response to shelter or nutrient enrichment. In these sediments, physical disturbance, perhaps in conjunction with nutrient enrichment, was the primary determinant of microbial biomass. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Sources and relative reactivities of amino acids, neutral sugars, and lignin in an intermittently anoxic marine environment

NASA Astrophysics Data System (ADS)

Cowie, Gregory L.; Hedges, John I.; Calvert, Stephen E.

1992-05-01

A sediment-trap sample, representing an annual average particle flux at 50 m in Saanich Inlet, British Columbia, was analyzed for its elemental, amino acid, neutral sugar, and lignin composition. Amino acid analyses also were performed on underlying sediments which were analyzed previously for organic carbon, nitrogen, neutral sugars, and lignin. The results uniformly indicate primarily marine organic matter sources for all samples, although relatively higher terrigenous contributions are evident in the sediments. The δ13C values of trap materials also point to primarily autochthonous particle fluxes. Comparison of annual average water-column fluxes to sediment accumulation rates indicates under-sampling of sinking particles due to lateral sediment inputs at depth. The anoxic benthic interface appears to be an important site of diagenesis, and selective removal is observed both at compound-class and molecular levels. Cinnamyl and syringyl phenols are selectively removed relative to vanillyl phenols and loss patterns of the monosaccharides, and to a lesser degree the amino acids, strongly indicate preferential preservation of diatom cell-wall materials. Low flux ratios displayed by the nonprotein amino acids are consistent with their diagenetic origin. Preferential loss of marine organic material is indicated by the calculated δ13C value and biochemical composition of the substrate. Concentrations of all measured organic constituents decreased with depth in the uniformly varved 0-14 cm sediment interval, and suggest in situ degradation. Relative reactivities of the biochemical classes indicate a change in diagenetic substrate from that utilized above and at the benthic interface. With the exception of the amino acids, however, diagenesis is generally less selective in the sediments. The amino acid utilization pattern differs from that observed across the benthic interface, and down-core changes in protein and nonprotein amino acid compositions clearly indicate in situ degradation. The sedimentary degraded fraction also appears to be predominantly marine, but lignin yields and sugar compositions suggest a relative increase in the utilization of vascular plant remains. Protein, polysaccharide, and lignin contributions to total organic carbon decrease from 37% in the sediment-trap sample to 22% at the bottom of the 0-14 cm sediment interval. These biochemicals represent over 40 and 50-60% of the degraded carbon and nitrogen, respectively, and thus are important nutrients for the benthic and water-column communities.

The Diatom Staurosirella pinnata for Photoactive Material Production

PubMed Central

Prosposito, Paolo; Casalboni, Mauro; Lamastra, Francesca Romana; Nanni, Francesca; Congestri, Roberta

2016-01-01

A native isolate of the colonial benthic diatom Staurosirella pinnata was cultivated for biosilica production. The silicified cell walls (frustules) were used as a source of homogeneous and structurally predictable porous biosilica for dye trapping and random laser applications. This was coupled with the extraction of lipids from biomass showing potential to fabricate photoactive composite materials sustainably. The strain was selected for its ease of growth in culture and harvesting. Biosilica and lipids were obtained at the end of growth in indoor photobioreactors. Frustules were structurally characterized microscopically and their chemistry analyzed with Fourier Transform Infrared Spectroscopy. Frustule capacity of binding laser dyes was evaluated on a set of frustules/Rhodamine B (Rho B) solutions and with respect to silicon dioxide and diatomite by Fluorescence Spectroscopy demonstrating a high affinity for the organic dye. The effect of dye trapping property in conveying Rho B emission to frustules, with enhancement of scattering events, was analyzed on Rho B doped polyacrylamide gels filled or not with frustules. Amplified spontaneous emission was recorded at increasing pump power indicating the onset of a random laser effect in frustule filled gels at lower power threshold compared to unfilled matrices. PMID:27828985

Biophysical control of intertidal benthic macroalgae revealed by high-frequency multispectral camera images

NASA Astrophysics Data System (ADS)

van der Wal, Daphne; van Dalen, Jeroen; Wielemaker-van den Dool, Annette; Dijkstra, Jasper T.; Ysebaert, Tom

2014-07-01

Intertidal benthic macroalgae are a biological quality indicator in estuaries and coasts. While remote sensing has been applied to quantify the spatial distribution of such macroalgae, it is generally not used for their monitoring. We examined the day-to-day and seasonal dynamics of macroalgal cover on a sandy intertidal flat using visible and near-infrared images from a time-lapse camera mounted on a tower. Benthic algae were identified using supervised, semi-supervised and unsupervised classification techniques, validated with monthly ground-truthing over one year. A supervised classification (based on maximum likelihood, using training areas identified in the field) performed best in discriminating between sediment, benthic diatom films and macroalgae, with highest spectral separability between macroalgae and diatoms in spring/summer. An automated unsupervised classification (based on the Normalised Differential Vegetation Index NDVI) allowed detection of daily changes in macroalgal coverage without the need for calibration. This method showed a bloom of macroalgae (filamentous green algae, Ulva sp.) in summer with > 60% cover, but with pronounced superimposed day-to-day variation in cover. Waves were a major factor in regulating macroalgal cover, but regrowth of the thalli after a summer storm was fast (2 weeks). Images and in situ data demonstrated that the protruding tubes of the polychaete Lanice conchilega facilitated both settlement (anchorage) and survival (resistance to waves) of the macroalgae. Thus, high-frequency, high resolution images revealed the mechanisms for regulating the dynamics in cover of the macroalgae and for their spatial structuring. Ramifications for the mode, timing, frequency and evaluation of monitoring macroalgae by field and remote sensing surveys are discussed.

Non-wadeable river bioassessment: spatial variation of benthic diatom assemblages in Pacific Northwest rivers, USA

EPA Science Inventory

Current bioassessment efforts are focused on small wadeable streams, at least partly because assessing ecological conditions in non-wadeable large rivers poses many additional challenges. In this study, we sampled 20 sites in each of seven large rivers in the Pacific Northwest, U...

ABSCISSA ASSESSMENT WITH ALGAE: A COMPARISON OF LOCAL AND LANDSCAPE IMPAIRMENT MEASURES FOR BIOLOGICAL ASSESSMENT USING BENTHIC DIATOMS

EPA Science Inventory

The development of rigorous biological assessments is dependent upon well-constructed abscissa, and various methods, both subjective and objective, exist to measure expected impairment at both the landscape and local scale. A new, landscape-scale method has recently been offered...

Sediment diatom species and community response to nitrogen addition in Oregon (USA) estuarine tidal wetlands

EPA Science Inventory

Sediment microalgae play an important role in nutrient cycling and are important primary producers in the food web in Pacific Northwest estuaries. This study examines the effects of nitrogen addition to benthic microalgae in tidal wetlands of Yaquina Bay estuary on the Oregon c...

Diatom cultivation and biotechnologically relevant products. Part II: current and putative products.

PubMed

Lebeau, T; Robert, J-M

2003-02-01

While diatoms are widely present in terms of diversity and abundance in nature, few species are currently used for biotechnologically applications. Most studies have focussed on intracellularly synthesised eicosapentaenoic acid (EPA), a polyunsaturated fatty acid (PUFA) used for pharmaceutical applications. Applications for other intracellular molecules, such as total lipids for biodiesel, amino acids for cosmetic, antibiotics and antiproliferative agents, are at the early stage of development. In addition, the active principle component must be identified amongst the many compounds of biotechnological interest. Biomass from diatom culture may be applied to: (1). aquaculture diets, due to the lipid- and amino-acid-rich cell contents of these microorganisms, and (2). the treatment of water contaminated by phosphorus and nitrogen in aquaculture effluent, or heavy metal (bioremediation). The most original application of microalgal biomass, and specifically diatoms, is the use of silicon derived from frustules in nanotechnology. The competitiveness of biotechnologically relevant products from diatoms will depend on their cost of production. Apart from EPA, which is less expensive when obtained from Phaeodactylum tricornutum than from cod liver, comparative economic studies of other diatom-derived products as well as optimisation of culture conditions are needed. Extraction of intracellular metabolites should be also optimised to reduce production costs, as has already been shown for EPA. Using cell immobilisation techniques, benthic diatoms can be cultivated more efficiently allowing new, biotechnologically relevant products to be investigated.

From sanddabs to blue whales: the pervasiveness of domoic acid.

PubMed

Lefebvre, Kathi A; Bargu, Sibel; Kieckhefer, Tom; Silver, Mary W

2002-07-01

Domoic acid (DA) is a potent food web transferred algal toxin that has caused dramatic mortality events involving sea birds and sea lions. Although no confirmed DA toxicity events have been reported in whales, here we present data demonstrating that humpback and blue whales are exposed to the toxin and consume DA contaminated prey. Whale fecal samples were found to contain DA at levels ranging from 10 to 207microg DA g(-1) feces via HPLC-UV methods. SEM analysis of whale feces containing DA, collected from krill-feeding whales, revealed the presence of diatom frustules identified as Pseudo-nitzschia australis, a known DA producer. Humpback whales were observed feeding on anchovies and sardines that contained DA at levels ranging from 75 to 444microg DA g(-1) viscera. DA contamination of whale feces and fish occurred only during blooms of toxic Pseudo-nitzschia. Additionally, several novel fish species collected during a toxic diatom bloom were tested for DA. Fish as diverse as benthic sanddabs and pelagic albacore were found to contain the neurotoxin, suggesting that DA permeates benthic as well as pelagic communities.

Selective and context-dependent effects of chemical stress across trophic levels at the basis of marine food webs.

PubMed

Mensens, Christoph; De Laender, Frederik; Janssen, Colin R; Rivera, Frances Camille; Sabbe, Koen; De Troch, Marleen

2018-04-26

Human activities increasingly impact the functioning of marine food webs, but anthropogenic stressors are seldom included in ecological study designs. Diet quality, as distinct from just diet quantity, has moreover rarely been highlighted in food web studies in a stress context. We measured the effects of metal and pesticide stress (copper and atrazine) on the contribution of a benthic intertidal diatom community to two processes that are key to the functioning of intertidal systems: biomass (diet quantity) and lipid (diet quality) production. We then examined if stressors affected diatom functioning by selectively targeting the species contributing most to functioning (selective stress effects) or by changing the species' functional contribution (context-dependent effects). Finally, we tested if stress-induced changes in diet quality altered the energy flow to the diatoms' main grazers (harpacticoid copepods). Diatom diet quantity was reduced by metal stress but not by low pesticide levels due to the presence of an atrazine-tolerant, mixotrophic species. Selective effects of the pesticide reduced diatom diet quality by 60% and 75% at low and high pesticide levels respectively, by shifting diatom community structure from dominance by lipid-rich species toward dominance by an atrazine-tolerant, but lipid-poor, species. Context-dependent effects did not affect individual diatom lipid content at low levels of both stressors, but caused diatoms to lose 40% of their lipids at high copper stress. Stress-induced changes in diet quality predicted the energy flow from the diatoms to their copepod consumers, which lost half of their lipids when feeding on diatoms grown under low and high pesticide and high metal stress. Selective pesticide effects were a more important threat for trophic energy transfer than context-dependent effects of both stressors, with shifts in diatom community structure affecting the energy flow to their copepod grazers at stress levels where no changes in diatom lipid content were detected. © 2018 by the Ecological Society of America.

Assessment of river quality in a subtropical Austral river system: a combined approach using benthic diatoms and macroinvertebrates

NASA Astrophysics Data System (ADS)

Nhiwatiwa, Tamuka; Dalu, Tatenda; Sithole, Tatenda

2017-12-01

River systems constitute areas of high human population densities owing to their favourable conditions for agriculture, water supply and transportation network. Despite human dependence on river systems, anthropogenic activities severely degrade water quality. The main aim of this study was to assess the river health of Ngamo River using diatom and macroinvertebrate community structure based on multivariate analyses and community metrics. Ammonia, pH, salinity, total phosphorus and temperature were found to be significantly different among the study seasons. The diatom and macroinvertebrate taxa richness increased downstream suggesting an improvement in water as we moved away from the pollution point sources. Canonical correspondence analyses identified nutrients (total nitrogen and reactive phosphorus) as important variables structuring diatom and macroinvertebrate community. The community metrics and diversity indices for both bioindicators highlighted that the water quality of the river system was very poor. These findings indicate that both methods can be used for water quality assessments, e.g. sewage and agricultural pollution, and they show high potential for use during water quality monitoring programmes in other regions.

Isolation and biochemical characterization of underwater adhesives from diatoms.

PubMed

Poulsen, Nicole; Kröger, Nils; Harrington, Matthew J; Brunner, Eike; Paasch, Silvia; Buhmann, Matthias T

2014-01-01

Many aquatic organisms are able to colonize surfaces through the secretion of underwater adhesives. Diatoms are unicellular algae that have the capability to colonize any natural and man-made submerged surfaces. There is great technological interest in both mimicking and preventing diatom adhesion, yet the biomolecules responsible have so far remained unidentified. A new method for the isolation of diatom adhesive material is described and its amino acid and carbohydrate composition determined. The adhesive materials from two model diatoms show differences in their amino acid and carbohydrate compositions, but also share characteristic features including a high content of uronic acids, the predominance of hydrophilic amino acid residues, and the presence of 3,4-dihydroxyproline, an extremely rare amino acid. Proteins containing dihydroxyphenylalanine, which mediate underwater adhesion of mussels, are absent. The data on the composition of diatom adhesives are consistent with an adhesion mechanism based on complex coacervation of polyelectrolyte-like biomolecules.

Establishing the Ecological Status of Mining-Impacted Freshwaters from Abrud River Catchment Area Using Benthic Diatom Communities (Ros, ia MontanÄă, Romania)

NASA Astrophysics Data System (ADS)

Olenici, Adriana; Baciu, Calin; Momeu, Laura; Cozma, Alexandra; Brahaita, Dorian; Pop, Cristian; Lazar, Laura; Popita, Gabriela; Teodosiu, Gabriela

2015-04-01

Keywords: diatom communities, indicator species, mine waters, water quality, Romania. Diatoms are a very distinct group of algae, identifiable under the light microscope by their yellow - brown coloration and by the presence of a thick silica cell wall. The potential for freshwater organisms to reflect changes in environmental conditions was first noted by Kolenati (1848) and Cohn (1853), who observed that biota in polluted waters were different from those in non-polluted situations. Diatoms are widely used to monitor river pollution because they are sensitive to water chemistry, especially to ionic content, pH, dissolved organic matter and nutrients. Wide geographic distribution and well-studied ecology of most diatom species are mentioned as major advantages of using diatoms as indicator organisms. At the same time water quality has begun to deteriorate increasingly, mainly as a result of the physical, chemical and bacteriological alterations, and the aquatic ecosystems are evermore affected by various types of pollution, the anthropic one being almost always included. A good example is Abrud River and its main tributaries (Roșia Montană and surrounding areas, Romania), which has suffered along the years because of the mining waters discharge. In this context, this study presents data on benthic diatom communities from the Abrud River catchment area. Sixteen sites have been sampled seasonal and the best represented diatom genera were Navicula, Nitzschia, Cymbella, Gomphonema, Achnantes, Surirella and Fragilaria. Qualitatively, the number of diatom species exhibited significant variation among sampling sites, also suggesting seasonal dynamics. For instance, in some sampling sites, algal assemblages were absent, as diatom communities were strongly affected by acid mine waters, released from old mining works and waste rocks depots. Some dominant taxa have been observed as well, suggesting critical saprobic levels of the Abrud River and some of its tributaries. The large quantity of organic matter, originating from untreated municipal water, together with the high concentrations of NO3-, draw attention to the mediocre quality of water in the area. Moreover, the values of the measured physical and chemical parameters (i.e. pH, salinity, conductivity, O2) and the concentrations of SO42-, Fe, Pb, Ni, Cu, Cd and Zn also indicates quality alterations caused by the mine waters flowing into some tributaries and the river. Besides diatoms, the study also referrs to the determination of bacterial communities existing in the same sampling area, that revealed the presence of the main groups of microorganisms involved in the biogeochemical cycles of C, N, Fe and S, and the absence of pathogenic bacteria such as total and faecal coliforms and faecal streptococci. The heterotrophic bacteria strains obtained which are highly adapted to the heavy metals occuring in the investigated habitats could be used as new microorganisms in the bioremediation processes of this water resource in future studies. Acknowledgments: The present contribution was financially supported by a grant of the Romanian National Authority for Scientific Research, CCCDI - UEFISCDI, project 3-005 Tools for sustainable gold mining in EU (SUSMIN). Dorian Brahaita has benefited from the financial support provided by the project POSDRU/159/1.5/S/132400.

The late Cenozoic diatom stratigraphy and paleolimnology of Tule Lake, Siskiyou Co. California

USGS Publications Warehouse

Bradbury, J.P.

1991-01-01

Lacustrine diatoms are diverse, well preserved and abundant in cores of lake sediment to 334 m depth near the town of Tulelake, Siskiyou County, northern California. The cores have been dated by radiometric, tephrochronologic and paleomagnetic techniques, which indicate a basal age of about 3 million years (Ma) and a nearly continuous depositional record for the Tule Lake basin for the last 3 million years (My). Fossil diatoms document the late Cenozoic paleolimnologic and paleoclimatic history for the northwestern edge of the Basin and Range Province. During the last 3 My, Tule Lake was typically a relatively deep, extensive lake. The Pliocene is characterized by a diatom flora dominated by Aulacoseira solida suggesting more abundant summer precipitation and warmer winters. Increases in 'Fragilaria' at 2.4 Ma and between 2.0 and 1.7 Ma imply cooler summers that correlate to glacial environments recorded elsewhere in the world. Stephanodiscus niagarae and 'Fragilaria' species dominate the Pleistocene. Benthic diatoms of alkalineenriched, saline waters occur with S. niagarae between 100 and 40 m depth (0.90-0.14 Ma). Tephrochronology indicates slow deposition and possible hiatuses between about 0.6 and 0.2 Ma. Overall, the Pleistocene diatom flora reflects cooler and sometimes drier climates, especially after major glaciations began 0.85 Ma. The chronology of even-numbered oxygen isotope stages approximately matches fluctuations in the abundance in 'Fragilaria' species since 1 Ma, suggesting that glacial periods at Tule Lake were expressed by relatively cool summers with enhanced effective moisture. Interglacial periods are represented by variable mixtures of freshwater planktonic and benthic alkaline diatom assemblages that suggest seasonal environments with winter-spring precipitation and summer moisture deficits. Glacial-interglacial environments since 150 ka were distinct from, and more variable than, those occurring earlier. The last full glacial period was very dry. Aulacoseira ambigua characterizes the late glacial and early Holocene record of Tule Lake. Its distribution indicates that warmer and wetter climates began about 15 ka in this part of the Great Basin. Fluctuations in diatom concentration suggests a 41000-yr. cycle between 3.0 and 2.5 Ma and 100000-yr. cycles after 1.0 Ma. In the late Pliocene and early Pleistocene, Aulacoseira solida percentages wax and wane in an approximately 400000-yr. cycle. The apparent response of Tule Lake diatom communities to orbitally induced insolation cycles underscores the importance of this record for the study of late Cenozoic paleoclimate change. The diatom stratigraphy records the evolution and local extinction of several species that may be biochronologically important. Stephanodiscus niagarae first appeared and became common in the Tule Lake record shortly after 1.8 Ma. Stephanodiscus carconensis disappeared about 1.8 Ma, while Aulacoseira solida is rare in the core after about 1.35 Ma. Cyclotella elgeri, a diatom characteristic of some outcrops referred to the Yonna Formation (Pliocene), is common only near the base of the core at an age of about 3 Ma. Detection of local extinctions is complicated by reworking of distinctive species from Pliocene diatomites surrounding Tule Lake. A new species, Aulacoseira paucistriata, is described from Pliocene lake deposits in the Klamath Basin. ?? 1991 Kluwer Academic Publishers.

Lake Level Variation in Small Lakes: Not a Clear Picture

NASA Astrophysics Data System (ADS)

Starratt, S.

2017-12-01

Lake level is a useful tool for identifying regional changes in precipitation and evaporation. Due to the volume of water in large lakes, they may only record large-scale changes in water balance, while smaller lakes may record more subtle variations. However, the record of water level in small lakes is affected by a number of factors including elevation, bathymetry, nutrient load, and aquatic macrophyte abundance. The latest Quaternary diatom records from three small lakes with areas of <10 ha (Hobart Lake, OR, 1458 masl; Swamp Lake, CA, 1554 masl; Favre Lake, NV, 2899 masl) and a larger lake (Medicine Lake, CA, 2036 masl, 154 ha) were compared in this study. All the lakes have a deep central basin (>10 m) surrounded by a shallow (1-2 m) shelf. Changes in the abundance of diatoms representing different life habits (benthic, tychoplanktic, planktic) were used to identify lake level variation. Benthic taxa dominate the assemblage when only the central basin is occupied. As the shallow shelf is flooded, the abundance of tychoplanktic taxa increases. Planktic taxa increase with the establishment of stratification. Favre Lake presents the clearest indication of initial lake level rise (7600-5750 cal yr BP) and intermittent flooding of the shelf for the remainder of the record. Stratification appears to become established only in the last few hundred years. Higher nutrient levels in the early part of the Hobart Lake record lead to a nearly monotypic planktic assemblage which is replaced by a tychoplanktic-dominated assemblage as the lake floods the shelf at about 3500 cal yr BP. The last 500 years is dominated by benthic taxa associated with aquatic macrophytes. The consistent presence of planktic taxa in the Swamp Lake record suggests that the lake was stratified during most of its history, although slight variations in the relative abundances of planktic and tychoplanktic groups occur. The Medicine Lake record shows a gradual increase in planktic species between 11,400 and 5500 cal yr BP, reflecting a gradual increase in stratification. Changes in the abundance of benthic and planktic taxa during the remainder of the record indicate variations in the shallow (<2 m) part of the lake. These results indicate diatom ecological groups show promise as a proxy for lake level reconstructions, and further ground-truthing is necessary.

Variations in diatom communities at genus and species levels in peatlands (central China) linked to microhabitats and environmental factors.

PubMed

Chen, Xu; Bu, Zhaojun; Stevenson, Mark A; Cao, Yanmin; Zeng, Linghan; Qin, Bo

2016-10-15

Peatlands are a specialized type of organic wetlands, fulfilling essential roles as global carbon sinks, headwaters of rivers and biodiversity hotspots. Despite their importance, peatlands are being lost at an alarming rate due to human disturbance and climatic variability. Both the scientific and regulatory communities have focused considerable attention on developing tools for assessing environmental changes in peatlands. Diatoms are widely used in biomonitoring studies of lakes, rivers and streams as they have high abundance, specific ecological preferences and can respond rapidly to environmental change. However, diatom-based assessment studies in peatlands remain limited. The aims of this study were to identify indicator species and genus for three types of habitats (hummocks, hollows and ditch edges) in peatlands (central China), to examine the effects of physiochemical factors on diatom composition at genus and species levels, and to compare the efficiency of species- and genus-level identification in environmental assessment. Our results revealed that hummocks were characterized by drought-tolerant diatoms, while hollows were dominated by species and genus preferring wet conditions. Ditch edges were characterized by diatoms with different life strategies. Depth to water table, redox potential, conductivity and calcium were significant predictors of both genus- and species-level composition. According to ordination analyses, pH was not correlated with species composition while it was a significant factor associated with genus-level composition. Genus-level composition outperformed species composition in describing the response of diatoms to environmental variables. Our results indicate that diatoms can be useful environmental indicators of peatlands, and show that genus-level taxonomic analysis can be a potential tool for assessing environmental change in peatlands. Copyright © 2016 Elsevier B.V. All rights reserved.

Microbenthic community structure and trophic status of sediments in the Mar Piccolo of Taranto (Mediterranean, Ionian Sea).

PubMed

Rubino, F; Cibic, T; Belmonte, M; Rogelja, M

2016-07-01

This study aimed to assess the benthic ecosystem trophic status in a heavily polluted marine area and the response of the microbenthic community to multiple and diffuse anthropogenic impacts, integrating information coming from the active and resting (plankton's cysts) components of microbenthos. Two sampling campaigns were carried out in the period 2013-2014 and four sampling sites at different levels of industrial contamination were chosen within the first and second inlet of the Mar Piccolo of Taranto. The chemical contamination affected to a higher extent the active microbenthos than the resting one. In the central part of the first inlet, characterised by more marine features, thrives a very rich and biodiverse microbenthic community. In contrast, at the polluted site near the military navy arsenal, extremely low densities (9576 ± 1732 cells cm(-3)) were observed for active microbenthos, but not for the resting community. Here, the high level of contamination selected for tychopelagic diatom species, i.e., thriving just above the surface sediments, while the other life forms died or moved away. Following the adoption of a 10 μm mesh, for the first time, resting spores produced by small diatoms of the genus Chaetoceros were found. Our results further indicate that although the Mar Piccolo is very shallow, the benthic system is scarcely productive, likely as a consequence of the accumulated contaminants in the surface sediments that probably interfere with the proper functioning of the benthic ecosystem.

Ecological health monitoring of the Mekong River by using benthic algae in 2003-2004

NASA Astrophysics Data System (ADS)

Kunpradid, T.

2005-05-01

The monitoring of ecological health of the Mekong River by using benthic algae was carried out from 2003 - 2004. Thirty sampling sites along the Mekong River and its tributaries were selected in Laos, Thailand, Cambodia and Veitnam. In this investigation, the distribution of some species of benthic algae in different environments revealed that there was a significant relationship in the presence of them to the water quality, and these species could be used as a potential biomonitor of water quality in the Mekong River. One hundred and eighty six species of benthic diatoms and 46 species of macroalgae were found. Some dominant species of benthic algae could be used as biomonitors to assess water quality. Hydrodictyon recticulatum and Microspora floccosa and indicated clean-moderate water quality; Audouinella cylindrica, Cladophora glomerata, Achnanthes inflate and Cymbella turgidula indicated moderate water quality; Stigeoclonium flagelliforum, Aulacoseira granulata and Cymbella tumida indicated moderate-polluted water quality and Caloglossa leprieurii, Gomphonema parvulum and Nitzschia clausii indicated polluted water quality. The ecological health assessment of the Mekong River by using the species of benthic algae as biomonitors reveled that in the upstream and tributaries revealed moderate water quality. In contrast, some sites in the lower Mekong showed moderate-polluted to polluted water quality.

The Laminated Marca Shale: High-Frequency Climate Cycles From the Latest Cretaceous

NASA Astrophysics Data System (ADS)

Davies, A.; Kemp, A. E.; Weedon, G.; Barron, J. A.

2005-12-01

The Latest Cretaceous (Maastrichtian) Marca Shale Member, California, displays a well-preserved record of alternating terrigenous and diatomaceous laminae couplets, remarkably similar in lithology to recent laminated sediments from the Gulf of California and Santa Barbara Basin. This similarity, together with the recognition of intra- and inter-annual variability in the diatom flora, implies an annual origin for these couplets. High-resolution backscattered electron imagery has identified two sublaminae types within the varved succession; near monospecific lamina of Chaetoceros-type resting spore and of large Azpeitiopsis morenoensis. The composition and occurrence of these laminae is similar to ENSO forced intra-annual variability of diatom flora along the modern Californian margin. Relative thickness variations in terrigenous and biogenic laminae (proxies for precipitation and productivity respectively) also exhibit similar characteristics to variability in Quaternary varves from the Santa Barbara Basin, shown to be imparted by ENSO forcing. In order to track changes in the levels of bottom water oxygenation within the basin, a bioturbation index was established. Periods when bioturbation was minimal (enhanced benthic anoxia) coincide with times of greatest diatomaceous export flux and also lowest flux of detrital material. Conversely, periods of enhanced bioturbation correspond with reduced diatomaceous export flux and an increased flux of detrital material, comparable with ENSO forced variations in diatomaceous and terrigenous export flux and associated benthic oxygenation levels in Pleistocene varves off the Californian margin. Power spectra obtained from time-series analysis of the bioturbation index and laminae thickness variations exhibit strong signals within the ENSO band. This research implies that high-frequency climate perturbations are inherent components of the climate system and that ENSO-type variability was not confined to the dynamic climate system of the Quaternary, but occurred as far back as the Cretaceous. These results also add to the growing body of evidence which indicate that warm end-member climate states are not characterised by a permanent El Nino state.

Plant pigment types, distributions, and influences on shallow water submerged aquatic vegetation mapping

NASA Astrophysics Data System (ADS)

Hall, Carlton R.; Bostater, Charles R., Jr.; Virnstein, Robert

2004-11-01

Development of robust protocols for use in mapping shallow water habitats using hyperspectral imagery requires knowledge of absorbing and scattering features present in the environment. These include, but are not limited to, water quality parameters, phytoplankton concentrations and species, submerged aquatic vegetation (SAV) species and densities, epiphytic growth on SAV, benthic microalgae and substrate reflectance characteristics. In the Indian River Lagoon, Fl. USA we conceptualize the system as having three possible basic layers, water column and SAV bed above the bottom. Each layer is occupied by plants with their associated light absorbing pigments that occur in varying proportions and concentrations. Phytoplankton communities are composed primarily of diatoms, dinoflagellates, and picoplanktonic cyanobacteria. SAV beds, including flowering plants and green, red, and brown macro-algae exist along density gradients ranging in coverage from 0-100%. SAV beds may be monotypic, or more typically, mixtures of the several species that may or may not be covered in epiphytes. Shallow water benthic substrates are colonized by periphyton communities that include diatoms, dinoflagellates, chlorophytes and cyanobacteria. Inflection spectra created form ASIA hyperspectral data display a combination of features related to water and select plant pigment absorption peaks.

Assessing the influence of multiple stressors on stream diatom metrics in the upper Midwest, USA

USGS Publications Warehouse

Munn, Mark D.; Waite, Ian R.; Konrad, Christopher P.

2018-01-01

Water resource managers face increasing challenges in identifying what physical and chemical stressors are responsible for the alteration of biological conditions in streams. The objective of this study was to assess the comparative influence of multiple stressors on benthic diatoms at 98 sites that spanned a range of stressors in an agriculturally dominated region in the upper Midwest, USA. The primary stressors of interest included: nutrients, herbicides and fungicides, sediment, and streamflow; although the influence of physical habitat was incorporated in the assessment. Boosted Regression Tree was used to examine both the sensitivity of various diatom metrics and the relative importance of the primary stressors. Percent Sensitive Taxa, percent Highly Motile Taxa, and percent High Phosphorus Taxa had the strongest response to stressors. Habitat and total phosphorous were the most common discriminators of diatom metrics, with herbicides as secondary factors. A Classification and Regression Tree (CART) model was used to examine conditional relations among stressors and indicated that fine-grain streams had a lower percentage of Sensitive Taxa than coarse-grain streams, with Sensitive Taxa decreasing further with increased water temperature (>30 °C) and triazine concentrations (>1500 ng/L). In contrast, streams dominated by coarse-grain substrate contained a higher percentage of Sensitive Taxa, with relative abundance increasing with lower water temperatures (<29 °C) and shallower water depth (<0.3 m). Quantile regression indicated that maximum water temperature appears to be a major limiting factor in Midwest streams; whereas both total phosphorus and percent fines showed a slight subsidy-stress response. While using benthic algae for assessing stream quality can be challenging, field-based studies can elucidate stressor effects and interactions when the response variables are appropriate, sufficient stressor resolution is achieved, and the number and type of sites represent a gradient of stressor conditions and at least a quasi-factorial design.

Accounting for regional variation in both natural environment and human disturbance to improve performance of multimetric indices of lotic benthic diatoms.

PubMed

Tang, Tao; Stevenson, R Jan; Infante, Dana M

2016-10-15

Regional variation in both natural environment and human disturbance can influence performance of ecological assessments. In this study we calculated 5 types of benthic diatom multimetric indices (MMIs) with 3 different approaches to account for variation in ecological assessments. We used: site groups defined by ecoregions or diatom typologies; the same or different sets of metrics among site groups; and unmodeled or modeled MMIs, where models accounted for natural variation in metrics within site groups by calculating an expected reference condition for each metric and each site. We used data from the USEPA's National Rivers and Streams Assessment to calculate the MMIs and evaluate changes in MMI performance. MMI performance was evaluated with indices of precision, bias, responsiveness, sensitivity and relevancy which were respectively measured as MMI variation among reference sites, effects of natural variables on MMIs, difference between MMIs at reference and highly disturbed sites, percent of highly disturbed sites properly classified, and relation of MMIs to human disturbance and stressors. All 5 types of MMIs showed considerable discrimination ability. Using different metrics among ecoregions sometimes reduced precision, but it consistently increased responsiveness, sensitivity, and relevancy. Site specific metric modeling reduced bias and increased responsiveness. Combined use of different metrics among site groups and site specific modeling significantly improved MMI performance irrespective of site grouping approach. Compared to ecoregion site classification, grouping sites based on diatom typologies improved precision, but did not improve overall performance of MMIs if we accounted for natural variation in metrics with site specific models. We conclude that using different metrics among ecoregions and site specific metric modeling improve MMI performance, particularly when used together. Applications of these MMI approaches in ecological assessments introduced a tradeoff with assessment consistency when metrics differed across site groups, but they justified the convenient and consistent use of ecoregions. Copyright © 2016 Elsevier B.V. All rights reserved.

Diatom-sedimentation feedback generates a self-organized geomorphic landscape on intertidal mudflats (Invited)

NASA Astrophysics Data System (ADS)

van de Koppel, J.; Weerman, E.; Herman, P.

2010-12-01

During spring, intertidal flats can exhibit strikingly regular spatial patterns of diatom-covered hummocks alternating with almost bare, water-filled hollows. We hypothesize that 1) the formation of this geomorphic landscape is caused by a strong interaction between benthic diatoms and sediment dynamics, inducing spatial self-organization, and 2) that self-organization affects ecosystem functioning by increasing the net average sedimentation on the tidal flat. We present a combined empirical and mathematical study to test the first hypothesis. We determined how the sediment erosion threshold varied with diatom cover and elevation. Our results were incorporated into a mathematical model to investigate whether the proposed mechanism could explain the formation of the observed patterns. Our mathematical model confirmed that the interaction between sedimentation, diatom growth and water redistribution could induce the formation of regular patterns on the intertidal mudflat. The model predicts that areas exhibiting spatially-self-organized patterns have increased sediment accretion and diatom biomass compared with areas lacking spatial patterns. We tested this prediction by following the sediment elevation during the season on both patterned and unpatterned parts of the mudflat. The results of our study confirmed our model prediction, as more sediment was found to accumulate in patterned parts of the mudflat, revealing how self-organization affected the functioning of mudflat ecosystems. Our study on intertidal mudflats provides a simple but clear-cut example of how the interaction between biological and geomorphological processes, through the process of self-organization, induces a self-organized geomorphic landscape.

Response of Spring Diatoms to CO2 Availability in the Western North Pacific as Determined by Next-Generation Sequencing.

PubMed

Endo, Hisashi; Sugie, Koji; Yoshimura, Takeshi; Suzuki, Koji

2016-01-01

Next-generation sequencing (NGS) technologies have enabled us to determine phytoplankton community compositions at high resolution. However, few studies have adopted this approach to assess the responses of natural phytoplankton communities to environmental change. Here, we report the impact of different CO2 levels on spring diatoms in the Oyashio region of the western North Pacific as estimated by NGS of the diatom-specific rbcL gene (DNA), which encodes the large subunit of RubisCO. We also examined the abundance and composition of rbcL transcripts (cDNA) in diatoms to assess their physiological responses to changing CO2 levels. A short-term (3-day) incubation experiment was carried out on-deck using surface Oyashio waters under different pCO2 levels (180, 350, 750, and 1000 μatm) in May 2011. During the incubation, the transcript abundance of the diatom-specific rbcL gene decreased with an increase in seawater pCO2 levels. These results suggest that CO2 fixation capacity of diatoms decreased rapidly under elevated CO2 levels. In the high CO2 treatments (750 and 1000 μatm), diversity of diatom-specific rbcL gene and its transcripts decreased relative to the control treatment (350 μatm), as well as contributions of Chaetocerataceae, Thalassiosiraceae, and Fragilariaceae to the total population, but the contributions of Bacillariaceae increased. In the low CO2 treatment, contributions of Bacillariaceae also increased together with other eukaryotes. These suggest that changes in CO2 levels can alter the community composition of spring diatoms in the Oyashio region. Overall, the NGS technology provided us a deeper understanding of the response of diatoms to changes in CO2 levels in terms of their community composition, diversity, and photosynthetic physiology.

Ciona intestinalis as a Marine Model System to Study Some Key Developmental Genes Targeted by the Diatom-Derived Aldehyde Decadienal

PubMed Central

Lettieri, Anna; Esposito, Rosaria; Ianora, Adrianna; Spagnuolo, Antonietta

2015-01-01

The anti-proliferative effects of diatoms, described for the first time in copepods, have also been demonstrated in benthic invertebrates such as polychaetes, sea urchins and tunicates. In these organisms PUAs (polyunsaturated aldehydes) induce the disruption of gametogenesis, gamete functionality, fertilization, embryonic mitosis, and larval fitness and competence. These inhibitory effects are due to the PUAs, produced by diatoms in response to physical damage as occurs during copepod grazing. The cell targets of these compounds remain largely unknown. Here we identify some of the genes targeted by the diatom PUA 2-trans-4-trans-decadienal (DD) using the tunicate Ciona intestinalis. The tools, techniques and genomic resources available for Ciona, as well as the suitability of Ciona embryos for medium-to high-throughput strategies, are key to their employment as model organisms in different fields, including the investigation of toxic agents that could interfere with developmental processes. We demonstrate that DD can induce developmental aberrations in Ciona larvae in a dose-dependent manner. Moreover, through a preliminary analysis, DD is shown to affect the expression level of genes involved in stress response and developmental processes. PMID:25789602

Benthic Food Webs of the Chukchi and Beaufort Seas: Relative Importance of Ultimate Carbon Sources in a Changing Climate

NASA Astrophysics Data System (ADS)

Dunton, K. H.; Schonberg, S. V.; Mctigue, N.; Bucolo, P. A.; Connelly, T. L.; McClelland, J. W.

2014-12-01

Changes in sea-ice cover, coastal erosion, and freshwater run-off have the potential to greatly influence carbon assimilation pathways and affect trophic structure in benthic communities across the western Arctic. In the Chukchi Sea, variations in the duration and timing of ice cover affect the delivery of ice algae to a relatively shallow (40-50 m) shelf benthos. Although ice algae are known as an important spring carbon subsidy for marine benthic fauna, ice algal contributions may also help initiate productivity of an active microphytobenthos. Recent studies provide clear evidence that the microphytobenthos are photosynthetically active, and have sufficient light and nutrients for in situ growth. The assimilation of benthic diatoms from both sources may explain the 13C enrichment observed in benthic primary consumers throughout the northern Chukchi. On the eastern Beaufort Sea coast, shallow (2-4 m) estuarine lagoon systems receive massive subsidies of terrestrial carbon that is assimilated by a benthic fauna of significant importance to upper trophic level species, but again, distinct 13C enrichment in benthic primary consumers suggests the existence of an uncharacterized food source. Since ice algae are absent, we believe the 13C enrichment in benthic fauna is caused by the assimilation of benthic microalgae, as reflected in seasonally high benthic chlorophyll in spring under replete light and nutrient conditions. Our observations suggest that changes in ice cover, on both temporal and spatial scales, are likely to have significant effects on the magnitude and timing of organic matter delivery to both shelf and nearshore systems, and that locally produced organic matter may become an increasingly important carbon subsidy that affects trophic assimilation and secondary ecosystem productivity.

Effect of Ocean Acidification and pH Fluctuations on the Growth and Development of Coralline Algal Recruits, and an Associated Benthic Algal Assemblage

PubMed Central

Roleda, Michael Y.; Cornwall, Christopher E.; Feng, Yuanyuan; McGraw, Christina M.; Smith, Abigail M.; Hurd, Catriona L.

2015-01-01

Coralline algae are susceptible to the changes in the seawater carbonate system associated with ocean acidification (OA). However, the coastal environments in which corallines grow are subject to large daily pH fluctuations which may affect their responses to OA. Here, we followed the growth and development of the juvenile coralline alga Arthrocardia corymbosa, which had recruited into experimental conditions during a prior experiment, using a novel OA laboratory culture system to simulate the pH fluctuations observed within a kelp forest. Microscopic life history stages are considered more susceptible to environmental stress than adult stages; we compared the responses of newly recruited A. corymbosa to static and fluctuating seawater pH with those of their field-collected parents. Recruits were cultivated for 16 weeks under static pH 8.05 and 7.65, representing ambient and 4× preindustrial pCO2 concentrations, respectively, and two fluctuating pH treatments of daily x~ = 8.05 (daytime pH = 8.45, night-time pH = 7.65) and daily x~ = 7.65 (daytime pH = 8.05, night-time pH = 7.25). Positive growth rates of new recruits were recorded in all treatments, and were highest under static pH 8.05 and lowest under fluctuating pH 7.65. This pattern was similar to the adults’ response, except that adults had zero growth under fluctuating pH 7.65. The % dry weight of MgCO3 in calcite of the juveniles was reduced from 10% at pH 8.05 to 8% at pH 7.65, but there was no effect of pH fluctuation. A wide range of fleshy macroalgae and at least 6 species of benthic diatoms recruited across all experimental treatments, from cryptic spores associated with the adult A. corymbosa. There was no effect of experimental treatment on the growth of the benthic diatoms. On the community level, pH-sensitive species may survive lower pH in the presence of diatoms and fleshy macroalgae, whose high metabolic activity may raise the pH of the local microhabitat. PMID:26469945

Effect of Ocean Acidification and pH Fluctuations on the Growth and Development of Coralline Algal Recruits, and an Associated Benthic Algal Assemblage.

PubMed

Roleda, Michael Y; Cornwall, Christopher E; Feng, Yuanyuan; McGraw, Christina M; Smith, Abigail M; Hurd, Catriona L

2015-01-01

Coralline algae are susceptible to the changes in the seawater carbonate system associated with ocean acidification (OA). However, the coastal environments in which corallines grow are subject to large daily pH fluctuations which may affect their responses to OA. Here, we followed the growth and development of the juvenile coralline alga Arthrocardia corymbosa, which had recruited into experimental conditions during a prior experiment, using a novel OA laboratory culture system to simulate the pH fluctuations observed within a kelp forest. Microscopic life history stages are considered more susceptible to environmental stress than adult stages; we compared the responses of newly recruited A. corymbosa to static and fluctuating seawater pH with those of their field-collected parents. Recruits were cultivated for 16 weeks under static pH 8.05 and 7.65, representing ambient and 4× preindustrial pCO2 concentrations, respectively, and two fluctuating pH treatments of daily [Formula: see text] (daytime pH = 8.45, night-time pH = 7.65) and daily [Formula: see text] (daytime pH = 8.05, night-time pH = 7.25). Positive growth rates of new recruits were recorded in all treatments, and were highest under static pH 8.05 and lowest under fluctuating pH 7.65. This pattern was similar to the adults' response, except that adults had zero growth under fluctuating pH 7.65. The % dry weight of MgCO3 in calcite of the juveniles was reduced from 10% at pH 8.05 to 8% at pH 7.65, but there was no effect of pH fluctuation. A wide range of fleshy macroalgae and at least 6 species of benthic diatoms recruited across all experimental treatments, from cryptic spores associated with the adult A. corymbosa. There was no effect of experimental treatment on the growth of the benthic diatoms. On the community level, pH-sensitive species may survive lower pH in the presence of diatoms and fleshy macroalgae, whose high metabolic activity may raise the pH of the local microhabitat.

Distribution of Diatoms in Relation to Land Use and pH in Blackwater Coastal Plain Streams

NASA Astrophysics Data System (ADS)

Zampella, Robert A.; Laidig, Kim J.; Lowe, Rex L.

2007-03-01

We compared the composition of diatom assemblages collected from New Jersey Pinelands blackwater streams draining four different land uses, including forest land, abandoned-cranberry bogs, active-cranberry bogs, and developed and upland-agricultural land. Over a 2-year period (2002-2003), we collected 132 diatom taxa at 14 stream sites. Between-year variability in the composition of stream samples was high. Most diatom species were rarely encountered and were found in low abundance. Specific conductance and pH were higher at developed/agricultural sites compared with all other site types. Neither species richness nor genus richness was significantly different between stream types. However, clear community patterns were evident, and a significant difference in species composition existed between the developed/agricultural sites and both cranberry and forest sites. The primary community gradient, represented by the first axis of a DCA ordination, was associated with variations in pH and specific conductance. Although community patterns revealed by ordinating the data collected in 2002 differed from those obtained using the 2003 data, both ordinations contrasted the developed/agricultural sites and the other sites. Acidobiontic and acidophilous diatoms characterized the dominant species at forest, abandoned-bog, and cranberry sites, whereas indifferent species dominated the developed/agricultural samples. Although our study demonstrated a relationship between the composition of diatom assemblages and watershed conditions, several factors, including taxonomic problems, the large number of diatom species, incomplete pH classifications, and year-to-year variability may limit the utility of diatom species as indicators of watershed conditions in the New Jersey Pinelands.

Seasonal changes of diatom species in the Hooghly estuary, India

NASA Astrophysics Data System (ADS)

Goswami, P. K.

2013-12-01

The Hooghly estuary is considered as one of the most important fishing ground of north-east India which is mainly because presence of large shallow parts of Bays, which provide extensive growths for benthic and planktonic community and also makes it a highly productive area .Anthropogenic effects induce intensive pressure to this ecosystem ;and consequently results in the eutrophication followed by rapid plankton growth, sometimes even bloom. Diatom comprises one of the most diverse and significant part of the biota of aquatic habitats. Ecologically they are of immense importance since they constitute the podium of food chain and are at pinnacle of the biomass pyramid. The present study was based on the diversity of most dominant diatom species found in the brackish waters of Hooghly estuarine region in three locations of Sagar islands - Gangasagar, Chemaguri and Kachuberia. In this study diatom distribution from post monsoon - pre monsoon period was studied on the specific assemblages of them.. There was wide diversity of diatom species in different locations and in different seasons. Maximum number of diatom species was found in post-monsoon period in Gangasagar and Chemaguri, while in Kachuberia maximum number was found in pre-monsoon period. In Gangasagar, Navicula socialis, Coscinodiscus spp. and Biddulphia spp. were the predominant species in early, mid and late post monsoon period respectively and Biddulphia spp. also continues as the predominant diatom in pre-monsoon period. In Chemaguri, Amphora ostrearia, Coscinodiscus perforatus and Nitzschia acuminate were the predominant species in early, mid and late post monsoon period respectively while Coscinodiscus radiates was the stable predominant diatom species in pre-monsoon period while Thalassionema spp., Ditylum spp., Proboscia spp. and Biddulphia spp. were also found in significantly increased numbers at different times of pre-monsoon period. In Kachuberia area although a wide range of diatoms are present in post-monsoon period it was Coscinodiscus radiates which was the single predominant species found in total pre-monsoon period. Although such changes of diatom species in different seasons may be due to influence of various factors but seasonal changes may be the major factor influencing such changes of diatom species in this area.

A Pliocene marine diatom δ18O record of terrestrial-marine feedbacks and orbitally-paced cryogenic brine formation in the McMurdo Dry Valleys

NASA Astrophysics Data System (ADS)

Dodd, J. P.; Abbott, T.; Gibbons, J. A.

2017-12-01

Orbital frequencies are well documented in a number of terrestrial and marine climate records throughout the Cenozoic; however, assessing the feedbacks and timing of terrestrial-marine systems on glacial-interglacial timescales is often challenging. This is particularly the case in high-latitude, near-shore environments where traditional proxy records like benthic foraminifera are absent. Here we present oxygen isotope (δ18O and δ17O) values from marine diatom silica in the mid-Pliocene (3.5 - 4.7Ma) section of the AND-1B core from McMurdo Sound, Antarctica. Diatom silica δ18O values range between +28.1 and +36.4‰ VSMOW. Over a range of temperatures (0 to 10°C) that reflect both growth and shallow (<100mbsf) diagenetic conditions, the calculated formation water δ18O values range from -14.7 to -6.7 (± 1.7)‰. The diatom silica δ18O values are in close agreement with the average pore water δ18O values in the nearby AND-2A sediment core of -10 ± 1‰. Pore water chemistry reflects cryogenic brines that formed through progressive freezing of seawater and mirabilite formation. Our calculated pore water δ18O values for the AND-1B core support the cryogenic brine hypothesis, with very low δ18O values during the mid-Pliocene interval. Δ17O values of the biogenic silica reflect formation water that does not fall on a mixing line between marine and meteoric waters, which also supports our cryogenic brine hypothesis. The AND-1B δ18O values have an inverse relationship with the stacked benthic foraminifera δ18O record where lower δ18O values in the AND-1B diatom silica correspond with colder intervals, and we interpret variations in the diatom δ18O values as increased brine flux from the MDV to McMurdo Sound. Currently, subsurface brines in the MDV are hydrologically connected with McMurdo Sound. Density-driven transport of these brines from the MDV to the marine costal environments during the warm mid-Pliocene indicate a potentially overlooked terrestrial source of hypersaline waters. Although the lateral extent of these brines is not known, mixing between the terrestrial cryogenic brines and seawater may represent a significant flux of hypersaline water to the marine environment during warmer-than-present global conditions.

Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

NASA Astrophysics Data System (ADS)

Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M.

2013-02-01

Benthic macroalgae are a common symptom of eutrophication in shallow coastal bays as a result of increased nutrient loads. Microphytobenthos (MPB) and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and MPB on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (∼16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g. L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ∼1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of MPB (i.e. light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24 %, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of MPB. The presence of macroalgae decreased SOM lability as well, which resulted in diminished buildup of bacterial biomass. By the final day of the experiment, PCA analyses revealed that sediment composition in treatments with macroalgae were more similar to dark treatments and less similar to light treatments without macroalgae. Overall MPB and benthic macroalgae fundamentally altered SOM quality and quantity, which may have notable ecological consequences for shallow-water systems such as increased hypoxia/anoxia, sulfide accumulation, enhanced mineralization and/or stimulated denitrification.

Cenozoic planktonic marine diatom diversity and correlation to climate change

USGS Publications Warehouse

Lazarus, David; Barron, John; Renaudie, Johan; Diver, Patrick; Türke, Andreas

2014-01-01

Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂18O (climate) and carbon cycle records (∂13C, and 20-0 Ma pCO2). Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p2 were only moderately higher than today. Diversity is strongly correlated to both ∂13C and pCO2 over the last 15 my (for both: r>.9, detrended r>.6, all p<.001), but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

Biochemical Composition of Dissolved Organic Matter Released During Experimental Diatom Blooms

NASA Technical Reports Server (NTRS)

Mannino, Antonio; Harvey, H. Rodger

2002-01-01

An axenic culture of Skeletonema costatum was grown to late-log phase to examine the molecular weight distribution and the biochemical composition of high molecular weight dissolved organic matter released in the absence of actively growing bacteria. A second culture was grown in a 5 m(exp 3) mesocosm and placed in darkness for a period of 51 days to examine the impact of phytoplankton bloom dynamics and microbial decomposition on dissolved (DOM) and particulate organic matter (POM) composition. DOM was separated using tangential-flow ultrafiltration into three nominal size fractions: LDOM (less than 1 kDa DOM), HDOM (1-30 kDa) and VHDOM (30 kDa-0.2 micron) and characterized. Both axenic and mesocosm diatom blooms released 28-33% of net primary production as dissolved organic carbon (DOC). In the axenic culture, HDOM and LDOM each comprised about half of the diatom-released DOC with less than l% as VHDOM. Diatoms from both experiments released carbohydrate-rich high molecular weight DOM. Much of the axenic diatom-released high molecular weight DOC could be chemically characterized (61% of HDOM and 78% of VHDOM) with carbohydrates as the primary component (45% of HDOM and 55% of VHDOM). Substantial amounts of hydrolyzable amino acids (16% of HDOM and 22% of VHDOM) and small amounts of lipids (less than 1%) were also released. Proportions of recognizable biochemical components in DOM produced in the mesocosm bloom were lower compared to the axenic culture. The presence of bacterial fatty acids and peptidoglycan-derived D-amino acids within high molecular weight fractions from the mesocosm bloom revealed that bacteria contributed a variety of macromolecules to DOM during the growth and decay of the diatom bloom. Release of significant amounts of DOC by diatoms demonstrates that DOM excretion is an important component of phytoplankton primary production. Similarities in high molecular weight DOM composition in marine waters and diatom cultures highlight the importance of phytoplankton to DOM composition in the ocean.

Decadal-Scale Changes of Dinoflagellates and Diatoms in the Anomalous Baltic Sea Spring Bloom

PubMed Central

Klais, Riina; Tamminen, Timo; Kremp, Anke; Spilling, Kristian; Olli, Kalle

2011-01-01

The algal spring bloom in the Baltic Sea represents an anomaly from the winter-spring bloom patterns worldwide in terms of frequent and recurring dominance of dinoflagellates over diatoms. Analysis of approximately 3500 spring bloom samples from the Baltic Sea monitoring programs revealed (i) that within the major basins the proportion of dinoflagellates varied from 0.1 (Kattegat) to >0.8 (central Baltic Proper), and (ii) substantial shifts (e.g. from 0.2 to 0.6 in the Gulf of Finland) in the dinoflagellate proportion over four decades. During a recent decade (1995–2004) the proportion of dinoflagellates increased relative to diatoms mostly in the northernmost basins (Gulf of Bothnia, from 0.1 to 0.4) and in the Gulf of Finland, (0.4 to 0.6) which are typically ice-covered areas. We hypothesize that in coastal areas a specific sequence of seasonal events, involving wintertime mixing and resuspension of benthic cysts, followed by proliferation in stratified thin layers under melting ice, favors successful seeding and accumulation of dense dinoflagellate populations over diatoms. This head-start of dinoflagellates by the onset of the spring bloom is decisive for successful competition with the faster growing diatoms. Massive cyst formation and spreading of cyst beds fuel the expanding and ever larger dinoflagellate blooms in the relatively shallow coastal waters. Shifts in the dominant spring bloom algal groups can have significant effects on major elemental fluxes and functioning of the Baltic Sea ecosystem, but also in the vast shelves and estuaries at high latitudes, where ice-associated cold-water dinoflagellates successfully compete with diatoms. PMID:21747911

Decadal-scale changes of dinoflagellates and diatoms in the anomalous baltic sea spring bloom.

PubMed

Klais, Riina; Tamminen, Timo; Kremp, Anke; Spilling, Kristian; Olli, Kalle

2011-01-01

The algal spring bloom in the Baltic Sea represents an anomaly from the winter-spring bloom patterns worldwide in terms of frequent and recurring dominance of dinoflagellates over diatoms. Analysis of approximately 3500 spring bloom samples from the Baltic Sea monitoring programs revealed (i) that within the major basins the proportion of dinoflagellates varied from 0.1 (Kattegat) to >0.8 (central Baltic Proper), and (ii) substantial shifts (e.g. from 0.2 to 0.6 in the Gulf of Finland) in the dinoflagellate proportion over four decades. During a recent decade (1995-2004) the proportion of dinoflagellates increased relative to diatoms mostly in the northernmost basins (Gulf of Bothnia, from 0.1 to 0.4) and in the Gulf of Finland, (0.4 to 0.6) which are typically ice-covered areas. We hypothesize that in coastal areas a specific sequence of seasonal events, involving wintertime mixing and resuspension of benthic cysts, followed by proliferation in stratified thin layers under melting ice, favors successful seeding and accumulation of dense dinoflagellate populations over diatoms. This head-start of dinoflagellates by the onset of the spring bloom is decisive for successful competition with the faster growing diatoms. Massive cyst formation and spreading of cyst beds fuel the expanding and ever larger dinoflagellate blooms in the relatively shallow coastal waters. Shifts in the dominant spring bloom algal groups can have significant effects on major elemental fluxes and functioning of the Baltic Sea ecosystem, but also in the vast shelves and estuaries at high latitudes, where ice-associated cold-water dinoflagellates successfully compete with diatoms.

A conceptual model for the blooming behavior and persistence of the benthic mat-forming diatom Didymosphenia geminata in oligotrophic streams

NASA Astrophysics Data System (ADS)

Cullis, James D. S.; Gillis, Carole-Anne; Bothwell, Max L.; Kilroy, Cathy; Packman, Aaron; Hassan, Marwan

2012-06-01

The benthic, mat-forming diatomDidymosphenia geminata has the unique ability to produce large amounts of algal biomass under oligotrophic conditions in cold, fast flowing streams and rivers. This presents an ecological paradox that challenges our current understanding of stream ecosystem dynamics. Our understanding of the drivers of D. geminata ecology is still limited. Here we present a conceptual model for the blooming behavior and persistence of this species to advance scientific understanding of strategies for life in fast flowing oligotrophic waters and support the design of future research and mitigation measures for nuisance algal blooms. The conceptual model is based on a synthesis of data and ideas from a range of disciplines including hydrology, geomorphology, biogeochemistry, and ecology. The conceptual model highlights the role of water chemistry, river morphology, and flow thresholds in defining the habitat window for D. geminata. We propose that bed disturbance is a primary control on accumulation and persistence of D. geminataand that the removal threshold can be determined by synthesizing site-specific information on hydrology and geomorphology. Further, we propose that a key to understanding the didymo paradox is the separation of cellular reproduction and mat morphology with specific controls acting in respect of the different processes.

Cenozoic Planktonic Marine Diatom Diversity and Correlation to Climate Change

PubMed Central

Lazarus, David; Barron, John; Renaudie, Johan; Diver, Patrick; Türke, Andreas

2014-01-01

Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂18O (climate) and carbon cycle records (∂13C, and 20-0 Ma pCO2). Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p<.001; detrended, r = .6, p = .01). Diatoms were 20% less diverse in the early late Miocene, when temperatures and pCO2 were only moderately higher than today. Diversity is strongly correlated to both ∂13C and pCO2 over the last 15 my (for both: r>.9, detrended r>.6, all p<.001), but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls. PMID:24465441

Drivers of Change in a 7300-Year Holocene Diatom Record from the Hemi-Boreal Region of Ontario, Canada

PubMed Central

Beck, Kristen K.; Medeiros, Andrew S.

2016-01-01

A Holocene lake sediment record spanning the past 7300 years from Wishart Lake in the Turkey Lakes Watershed in the Hemi-Boreal of central Ontario, Canada, was used to evaluate the potential drivers of long-term change in diatom assemblages at this site. An analysis of diatom assemblages found that benthic and epiphytic taxa dominated the mid-Holocene (7300–4000 cal yr BP), indicating shallow, oligotrophic, circum-neutral conditions, with macrophytes present. A significant shift in diatom assemblages towards more planktonic species (mainly Cyclotella sensu lato, but also several species of Aulacoseira, and Tabellaria flocculosa) occurred ~4000 cal yr BP. This change likely reflects an increase in lake level, coincident with the onset of a more strongly positive moisture balance following the drier climates of the middle Holocene, established by numerous regional paleoclimate records. Pollen-inferred regional changes in vegetation around 4000 yrs BP, including an increase in Betula and other mesic taxa, may have also promoted changes in diatom assemblages through watershed processes mediated by the chemistry of runoff. A more recent significant change in limnological conditions is marked by further increases in Cyclotella sensu lato beginning in the late 19th century, synchronous with the Ambrosia pollen rise and increases in sediment bulk density, signaling regional and local land clearance at the time of Euro-Canadian settlement (1880 AD). In contrast to the mid-Holocene increase in planktonic diatoms, the modern increase in Cyclotella sensu lato likely indicates a response to land use and vegetation change, and erosion from the watershed, rather than a further increase in water level. The results from Wishart Lake illustrate the close connection between paleoclimate change, regional vegetation, watershed processes, and diatom assemblages and also provides insight into the controls on abundance of Cyclotella sensu lato, a diatom taxonomic group which has shown significant increases and complex dynamics in the post-industrial era in lakes spanning temperate to Arctic regions. PMID:27532216

Cenozoic planktonic marine diatom diversity and correlation to climate change.

PubMed

Lazarus, David; Barron, John; Renaudie, Johan; Diver, Patrick; Türke, Andreas

2014-01-01

Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂(18)O (climate) and carbon cycle records (∂(13)C, and 20-0 Ma pCO2). Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p<.001; detrended, r = .6, p = .01). Diatoms were 20% less diverse in the early late Miocene, when temperatures and pCO2 were only moderately higher than today. Diversity is strongly correlated to both ∂(13)C and pCO2 over the last 15 my (for both: r>.9, detrended r>.6, all p<.001), but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

Community and Ecosystem-Level Impacts of an Emergent Macrophyte on the Ventura River, California.

NASA Astrophysics Data System (ADS)

Simpson, J.; Leydecker, A.; Melack, J.

2005-05-01

Ludwigia hexapetala is a pervasive, emergent vascular plant on the lower Ventura River. Presence of this plant appears to facilitate growth of shade-tolerant diatoms, while indirectly inhibiting filamentous green macroalgae. Four sites on the river were monitored during 2003; three downstream of a wastewater treatment plant, where Ludwigia is present, and one upstream site where it is absent. Filamentous algae occurred at all four sites, but declined rapidly at the below-treatment plant sites as growth and cover of vascular plants increased. By late summer, percent cover at these sites was dominated by Ludwigia, while the upstream site was consistently dominated by green macroalgae. Submerged plant parts provided substrate for diatom colonization, roughly doubling benthic diatom biomass (measured as chlorophyll a) at the downstream sites. Presence of the Ludwigia population also had strong ecosystem-level effects. The wastewater effluent produced typical stream water nitrate concentrations of 100-200 uM. Nitrate uptake rates downstream of the treatment plant inputs averaged 5 kg N/km/day, and direct uptake by Ludwigia could account for 20-40% of this nitrate drawdown. Further nitrate removal from the water column may be indirectly facilitated by the presence of Ludwigia through facilitation of diatom population growth.

Millennial-scale changes of surface and bottom water conditions in the northwestern Pacific during the last deglaciation

NASA Astrophysics Data System (ADS)

Kim, Sunghan; Khim, Boo-Keun; Ikehara, Ken; Itaki, Takuya; Shibahara, Akihiko; Yamamoto, Masanobu

2017-07-01

Changes in water column conditions in the northwestern Pacific during the last 23 ka were reconstructed using geochemical and isotope proxies and redox elemental compositions along with published data (alkenone sea surface temperature (SST) and benthic foraminiferal fauna) at core GH02-1030. Surface water primary productivity in terms of biogenic opal and TOC contents, which mainly represented export production of diatom, was closely related to alkenone (spring-summer) SST and the development of spring-summer mixed layer depth. The different variation patterns of nitrate and silicic acid utilization, estimated by bulk δ15N and δ30Sidiatom values, respectively, are most likely due to the water column denitrification influence on bulk δ15N. Dysoxic bottom water conditions occurred during the Bølling-Allerød (BA) and the Pre-Boreal (PB), which was evident by laminated sediments, abundant dysoxic benthic foraminifers, and increased redox elemental compositions. Although surface water productivity increased during the BA and PB, dysoxic bottom water conditions were caused by a combination of enhanced surface water productivity and reduced ventilation of North Pacific Intermediate Water (NPIW) in response to meltwater input from the high latitude areas. Based on records of core GH02-1030 and other cores in the northwestern Pacific, the Okhotsk Sea, and the Bering Sea, which are all proximal to the modern NPIW source region, dissolved oxygen concentrations of bottom water were more depleted during the BA than PB. Such difference was attributed to more sluggish NPIW ventilation due to more meltwater input during the BA than the PB. The opening or closure of the Bering Strait is critical to the direction of meltwater transport to the northwestern Pacific.

Diatoms as paleoecological indicators of environmental change in the Lake Czechowskie catchments ecosystem (Northern Tuchola Pinewoods, Poland)

NASA Astrophysics Data System (ADS)

Rzodkiewicz, Monika; Zawiska, Izabela; Noryśkiewicz, Agnieszka Maria; Obremska, Milena; Ott, Florian; Kramkowski, Mateusz; Słowiński, Michał; Błaszkiewicz, Mirosław; Brauer, Achim

2016-04-01

In this study we investigated four cores of biogenic sediments from the lakes located in close vicinity. Three cores are situated along a transect in the Lake Czechowskie basin from its deepest point towards a former lake bay. The fourth sediment core was retrieved from the nearby Trzechowskie paleolake. Lake Czechowskie is located in the northern part of the Tuchola Pinewoods District (Northern Poland) in a young glacial landscape. At present, the majority of the area is forested or used for agriculture. The main focus was of the study was Late Glacial and early Holocene period. We performed diatom, Cladocera and pollen analyses, the chronology was established by varve counting, confirmed by AMS 14C dating and Laacher See Tephra (Wulf et. all 2013). In this study we focused on the results of diatom analyses. Diatom assemblages are integrated indicators of environmental change because their distributions are closely linked to water quality parameters including such as nutrient availability. At the beginning of Allerød there are more eutrophic diatom taxa such as Staurosira construens, Pseudostaurosira brevistriata, Staurosira pinnata. These species are widely distributed in the littoral mainly freshwater, many of which are species of epiphytic, preferring water rich in nutrients. At the end of the Allerød we observe significant changes within diatom assemblages. The increase of planktonic Cyclotella comensis together with the decrease of benthic Stauroseria construens indicate the shortening of time with ice cove on the lake and longer time with summer stratification. In the Younger Dryas cooling we can see the increase of the abundance of diatom Staurosira construens which indicate cold spring and late ice-out (Bradbury et al., 2002). At the early Holocene planktonic diatoms increase in particular Cyclotella comensis, Punciculata radiosa and Cyclotella praetermissa. Some of Aulacoseira species at the end of Younger Dryas. The Holocene sediments showed no variation of the species composition. Planktonic diatoms dominate in all studied location, expecially Cyclotella comensis, Punciculata radiosa, Cyclotella praetermissa and Stephanodiscus parvus. The results of our research shows that diatom communities were sensitive to climatic changes, which are well reflected in lake environment conditions. The strongest shifts in species assemblagess were noted at the beginning of the Allerød, the Younger Dryas onset and the transition into the early Holocene. The Late Glacial climate fluctuations caused more abrupt lake environment changes than during the Early Holocene. This study is a contribution to the Virtual Institute ICLEA (Integrated Climate and Landscape Evolution Analysis) funded by the Helmholtz Association. The research was supported by the National Science Centre Poland (grant NCN 2011/01/B/ST10/07367). Literature: Bradbury, P., Cumming, B., Laird, K., 2002. A 1500-year record of climatic and environmental change in ElkLake, Minnesota III: measures of past primary productivity. Journal of Paleolimnology 27, 321-340 Wulf S., Ott F., Słowiński M., Noryśkiewicz A. M., Drager N., Martin-Puertas C., Czymzik M., Neugebauer I., Dulski P., Bourne A., Błaszkiewicz M., Brauer A. 2013. Tracing the Laacher See Tephra in the varved sediment record of the Trzechowskie palaeolake in central Northern Poland. Quaternary Science Reviews, s. 129-139.

Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

NASA Astrophysics Data System (ADS)

Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M. N.

2013-08-01

Microphytobenthos and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and microphytobenthos on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (~ 16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g., L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ~ 1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of microphytobenthos (i.e., light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24%, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of microphytobenthos. The presence of macroalgae decreased SOM lability as well, which resulted in diminished buildup of bacterial biomass. By the final day of the experiment, principal component analysis revealed that sediment composition in treatments with macroalgae was more similar to dark treatments and less similar to light treatments without macroalgae. Overall, microphytobenthos and benthic macroalgae fundamentally altered SOM quality and quantity, which may have notable ecological consequences for shallow-water systems such as increased hypoxia/anoxia, sulfide accumulation, enhanced mineralization and/or stimulated denitrification.

A shift in the biogenic silica of sediment in the Larsen B continental shelf, off the Eastern Antarctic Peninsula, resulting from climate change.

PubMed

Sañé, Elisabet; Isla, Enrique; Bárcena, María Ángeles; DeMaster, David J

2013-01-01

In 2002, section B of the Larsen ice shelf, off of the Eastern Antarctic Peninsula, collapsed and created the opportunity to study whether the changes at the sea surface left evidence in the sedimentary record. Biogenic silica is major constituent of Antarctic marine sediment, and its presence in the sediment column is associated with diatom production in the euphotic zone. The abundance of diatom valves and the number of sponge spicules in the biogenic silica was analyzed to determine how the origin of the biogenic silica in the upper layers of the sediment column responded to recent environmental changes. Diatom valves were present only in the upper 2 cm of sediment, which roughly corresponds to the period after the collapse of the ice shelf. In contrast, sponge spicules, a more robust form of biogenic silica, were also found below the upper 2 cm layer of the sediment column. Our results indicate that in this region most of the biogenic silica in the sedimentary record originated from sponge spicules rather than diatoms during the time when the sea surface was covered by the Larsen ice shelf. Since the collapse of the ice shelf, the development of phytoplankton blooms and the consequent influx of diatom debris to the seabed have shifted the biogenic silica record to one dominated by diatom debris, as occurs in most of the Antarctic marine sediment. This shift provides further evidence of the anthropogenic changes to the benthic habitats of the Antarctic and will improve the interpretation of the sedimentary record in Polar Regions where these events occur.

What controls silicon isotope fractionation during dissolution of diatom opal?

NASA Astrophysics Data System (ADS)

Wetzel, F.; de Souza, G. F.; Reynolds, B. C.

2014-04-01

The silicon isotope composition of opal frustules from photosynthesising diatoms is a promising tool for studying past changes in the marine silicon cycle, and indirectly that of carbon. Dissolution of this opal may be accompanied by silicon isotope fractionation that could disturb the pristine silicon isotope composition of diatom opal acquired in the surface ocean. It has previously been shown that dissolution of fresh and sediment trap diatom opal in seawater does fractionate silicon isotopes. However, as the mechanism of silicon isotope fractionation remained elusive, it is uncertain whether opal dissolution in general is associated with silicon isotope fractionation considering that opal chemistry and surface properties are spatially and temporally (i.e. opal of different age) diverse. In this study we dissolved sediment core diatom opal in 5 mM NaOH and found that this process is not associated with significant silicon isotope fractionation. Since no variability of the isotope effect was observed over a wide range of dissolution rates, we can rule out the suggestion that back-reactions had a significant influence on the net isotope effect. Similarly, we did not observe an impact of temperature, specific surface area, or degree of undersaturation on silicon isotope partitioning during dissolution, such that these can most likely also be ruled out as controlling factors. We discuss the potential impacts of the chemical composition of the dissolution medium and age of diatom opal on silicon isotope fractionation during dissolution. It appears most likely that the controlling mechanism of silicon isotope fractionation during dissolution is related to the reactivity, or potentially, aluminium content of the opal. Such a dependency would imply that silicon isotope fractionation during dissolution of diatom opal is spatially and temporally variable. However, since the isotope effects during dissolution are small, the silicon isotope composition of diatom opal appears to be robust against dissolution in the deep sea sedimentary environment.

Didymosphenia geminata invasion in South America: Ecosystem impacts and potential biogeochemical state change in Patagonian rivers

NASA Astrophysics Data System (ADS)

Reid, Brian; Torres, Rodrigo

2014-01-01

The diatom Didymosphenia geminata has emerged as a major global concern, as both an aggressive invader of rivers and streams in the southern hemisphere, and for its ability to form nuisance blooms in oligotrophic systems in its native range. South American D. geminata blooms were first documented in Chilean Patagonia in May 2010, and have spread to over five regions and three provinces, in Chile and Argentina respectively. The Patagonian invasion represents a distinct challenge compared to other regions; not only are affected systems poorly characterized, but also a general synthesis of the nature and magnitude of ecosystem impacts is still lacking. The latter is essential in evaluating impacts to ecosystem services, forms the basis for a management response that is proportional to the potentially valid threats, or aids in the determination of whether action is warranted or feasible. Based on a revision of the recent literature, some of the most significant impacts may be mediated through physical changes: substantially increased algal biomass, trapping of fine sediment, altered hydrodynamics, and consequent effects on biogeochemical states and processes such as redox condition, pH and nutrient cycling in the benthic zone. Surveys conducted during the early invasion in Chile show a strong correlation between benthic biomass and associated fine sediments, both of which were one-two orders of magnitude higher within D. geminata blooms. Experimental phosphorous amendments showed significant abiotic uptake, while interstitial water in D. geminata mats had nearly 10-20 fold higher soluble reactive phosphorous and a pronounced pH cycle compared to the water column. A dominant and aggressive stalk-forming diatom with this combination of characteristics is in sharp contrast to the colonial cyanobacteria and bare gravel substrate that characterize many Patagonian streams. The potential displacement of native benthic algal communities with contrasting functional groups, increased primary producer biomass, and fine benthic sediment accumulation, all may have a significant effect on stream nutrient cycling and ecosystem function, in Patagonia and elsewhere where nuisance blooms have been reported.

Diatoms (Class Bacillariophyceae) and geochemistry from annually laminated mid-Holocene sediments, west coast Canada: insights into abrupt climate change in the past

NASA Astrophysics Data System (ADS)

Chang, A.; Pedersen, T. F.

2009-04-01

A 115-year record of annually laminated sediments from Effingham Inlet, a small anoxic fjord on the west coast of Vancouver Island, British Columbia (49˚N, 125˚W), was analyzed for diatoms (species and abundances) and geochemistry (C and N isotopes, organic C and trace elements Ag, Cd, Re and Mo) from a piston core. The sediments were radiocarbon dated at approx. 4200-4400 years before present (yr BP) and show diatom enriched varves in the lower 70 years, with a sudden transition to diatom impoverished varves above. In the lower section, varves are thick (2-5 mm) and consist of well-defined Thalassiosira-Skeletonema-Chaetoceros spring bloom successions. Diatom concentrations average at 787 ± 733 million valves/g of dry sediment, del 15N at 7.0 ± 0.5 per mil, and organic C at 5.2 ± 0.5 wt. %. In the upper section, the varves are thinner (1-2 mm), do not clearly show the seasonal diatom succession, and contain increased terrigenous detritus. Diatom concentrations average at 388 ± 202 million valves/g with an increased relative abundance of benthic and freshwater taxa, del 15N at 7.3 ± 0.6 per mil and organic C at 5.7 ± 0.5 wt. %. Values of del 13C for both sections are similar, averaging at -24.0 ± 0.5 per mil. The trace element concentrations are quite variable throughout the section. However, several thin (<1 cm) nonlaminated intervals show decreased diatom abundances with concomitant increases in trace element concentrations, suggesting short-lived changes in surface productivity, upwelling and nutrient delivery, and/or anoxic conditions. The abrupt transition from diatom-rich to diatom-poor varves could reflect a shift in dominance of the North Pacific High and Aleutian Low atmospheric pressure systems over the northeast Pacific Ocean, not unlike the well-documented 1976/1977 climate regime shift which showed a change in upwelling and nutrient delivery. A transition between warm and sunny climates to cooler and wetter regimes at around 4000 yr BP has been noted in previous paleoenvironmental studies from British Columbia and the northern hemisphere in general. The Effingham Inlet sediment record data will also be compared with modern sediment trap data from the inlet.

Microphytoplankton variations during coral spawning at Los Roques, Southern Caribbean

PubMed Central

Zubillaga, Ainhoa L.; Bastidas, Carolina

2016-01-01

Phytoplankton drives primary productivity in marine pelagic systems. This is also true for the oligotrophic waters in coral reefs, where natural and anthropogenic sources of nutrients can alter pelagic trophic webs. In this study, microphytoplankton assemblages were characterized for the first time in relation to expected coral spawning dates in the Caribbean. A hierarchical experimental design was used to examine these assemblages in Los Roques archipelago, Venezuela, at various temporal and spatial scales for spawning events in both 2007 and 2008. At four reefs, superficial water samples were taken daily for 9 days after the full moon of August, including days before, during and after the expected days of coral spawning. Microphytoplankton assemblages comprised 100 microalgae taxa at up to 50 cells per mL (mean ± 8 SD) and showed temporal and spatial variations related to the coral spawning only in 2007. However, chlorophyll a concentrations increased during and after the spawning events in both years, and this was better matched with analyses of higher taxonomical groups (diatoms, cyanophytes and dinoflagellates), that also varied in relation to spawning times in 2007 and 2008, but asynchronously among reefs. Heterotrophic and mixotrophic dinoflagellates increased in abundance, correlating with a decrease of the diatom Cerataulina pelagica and an increase of the diatom Rhizosolenia imbricata. These variations occurred during and after the coral spawning event for some reefs in 2007. For the first time, a fresh-water cyanobacteria species of Anabaena was ephemerally found (only 3 days) in the archipelago, at reefs closest to human settlements. Variability among reefs in relation to spawning times indicated that reef-specific processes such as water residence time, re-mineralization rates, and benthic-pelagic coupling can be relevant to the observed patterns. These results suggest an important role of microheterotrophic grazers in re-mineralization of organic matter in coral reef waters and highlight the importance of assessing compositional changes of larger size fractions of the phytoplankton when evaluating primary productivity and nutrient fluxes. PMID:27019774

Influence of the Little Ice Age on the biological structure of lakes in South West Greenland

NASA Astrophysics Data System (ADS)

McGowan, S.; Hogan, E. J.; Jones, V.; Anderson, N. J.; Simpson, G.

2013-12-01

Arctic lakes are considered to be particularly sensitive to environmental change, with biological remains in lake sediment records being interpreted as reflecting climate forcing. However the influence that differences in catchment properties and lake morphometries have on the sedimentary record is rarely considered. We investigated sediment cores from three lakes located close to the inland ice sheet margin in the Kangerlussuaq area of South West Greenland but within a few kilometres of one another. This regional replication allowed for direct comparisons of biological change in lakes exposed to identical environmental pressures (cooling, increased wind speeds) over the past c.2000 years. Sedimentary pigments were used as a proxy for whole-lake production and to investigate differences in phytoplankton community structure whilst fossil diatom assemblages were studied to determine differences in ecological responses during this time. We noted several major effects of the Little Ice Age cooling (LIA, c. 1400-1850AD). The organic content of sediments in all three lakes declined, and this effect was most pronounced in lakes closest to the inland ice sheet margin, which suggests that aeolian inputs derived from the glacial outwash plains (sandurs), and wind-scouring of the thin catchment soils by strong katabatic winds associated with the regional cooling might have both contributed to this sedimentary change. During the LIA total algal production (as indicated by chlorophyll and carotenoid pigments) was lower in all three lakes, most likely because of extended ice-cover and shorter growing seasons, and the ratio of planktonic: benthic diatom taxa increased, possibly because of lower light availability or fertilization from loess material. Despite this coherence in lake response to the LIA, diatom community composition changes in individual lakes differed, reflecting individual lake morphometry and catchment characteristics. These findings highlight the importance of regionally-replicated palaeo-studies when interpreting ecological impacts of long-term climate variability, and in assessing likely future response to climate change.

Trophic Dynamics of Filter Feeding Bivalves in the Yangtze Estuarine Intertidal Marsh: Stable Isotope and Fatty Acid Analyses

PubMed Central

Wang, Sikai; Jin, Binsong; Qin, Haiming; Sheng, Qiang; Wu, Jihua

2015-01-01

Benthic bivalves are important links between primary production and consumers, and are essential intermediates in the flow of energy through estuarine systems. However, information on the diet of filter feeding bivalves in estuarine ecosystems is uncertain, as estuarine waters contain particulate matter from a range of sources and as bivalves are opportunistic feeders. We surveyed bivalves at different distances from the creek mouth at the Yangtze estuarine marsh in winter and summer, and analyzed trophic dynamics using stable isotope (SI) and fatty acid (FA) techniques. Different bivalve species had different spatial distributions in the estuary. Glauconome chinensis mainly occurred in marshes near the creek mouth, while Sinonovacula constricta preferred the creek. Differences were found in the diets of different species. S. constricta consumed more diatoms and bacteria than G. chinensis, while G. chinensis assimilated more macrophyte material. FA markers showed that plants contributed the most (38.86 ± 4.25%) to particular organic matter (POM) in summer, while diatoms contributed the most (12.68 ± 1.17%) during winter. Diatoms made the largest contribution to the diet of S. constricta in both summer (24.73 ± 0.44%) and winter (25.51 ± 0.59%), and plants contributed no more than 4%. This inconsistency indicates seasonal changes in food availability and the active feeding habits of the bivalve. Similar FA profiles for S. constricta indicated that the bivalve had a similar diet composition at different sites, while different δ13C results suggested the diet was derived from different carbon sources (C4 plant Spartina alterniflora and C3 plant Phragmites australis and Scirpus mariqueter) at different sites. Species-specific and temporal and/or spatial variability in bivalve feeding may affect their ecological functions in intertidal marshes, which should be considered in the study of food webs and material flows in estuarine ecosystems. PMID:26261984

Long-term (1998 vs. 2010) large-scale comparison of soft-bottom benthic macrofauna composition in the Gulf of Lions, NW Mediterranean Sea

NASA Astrophysics Data System (ADS)

Bonifácio, Paulo; Grémare, Antoine; Gauthier, Olivier; Romero-Ramirez, Alicia; Bichon, Sabrina; Amouroux, Jean-Michel; Labrune, Céline

2018-01-01

We achieved a long term (i.e., 1998 vs. 2010) large scale (i.e., whole Gulf of Lions) study of benthic macrofauna composition in the Gulf of Lions based on the resampling of 91 stations located along 21 inshore-offshore transects. Results show that the 3 main benthic communities identified in 1998 were still present in 2010 although their composition changed. Using only year and station of sampling we found a significant space-time interaction explaining changes in macrofaunal community composition, and, in this study, stations differ primarily in terms of depth and distance to the Rhône river mouth. Temporal changes in benthic macrofauna composition were clearly most important at shallow stations (i.e., in the Littoral Fine Sand community) than at deep ones (i.e., Terrigenous Coastal Mud community). These results are in good agreement with the current paradigm according to which climatic oscillations such as NAO (North Atlantic Oscillation) and WeMO (Western Mediterranean Oscillation) are indirectly (i.e., through changes in the frequency of occurrence and the intensity of storms) controlling benthic macrofauna composition in the Gulf of Lions. This hypothesis is further supported by a meta-analysis of changes in the average and maximal yearly abundances of the polychaete Ditrupa arietina. At last, the spatial modelling of 1998 and 2010 benthic macrofauna compositions both suggested a significant effect of Rhône River inputs on the spatial distribution of benthic macrofauna in the Gulf of Lions.

Differential dissolution of Lake Baikal diatoms: correction factors and implications for palaeoclimatic reconstruction

NASA Astrophysics Data System (ADS)

Battarbee, Richard W.; Mackay, A. W.; Jewson, D. H.; Ryves, D. B.; Sturm, M.

2005-04-01

In order to assess how faithfully the composition of diatom assemblages in the recent sediments of Lake Baikal represents the composition of the planktonic diatom populations in the lake, we have compared the flux of diatoms from the water column (i.e., "expected" in the sediment) with the accumulation rates of the same diatom taxa (i.e., "observed" in the sediment) from BAIK 38, a sediment core collected in the south basin of the lake. Whilst there are many uncertainties, the results indicate that only approximately 1% of the phytoplankton crop is preserved in the sediment and some species are more affected by dissolution than others. These findings are comparable to similar studies undertaken in the marine environment. In terms of differential dissolution, our studies suggest that the endemic taxa (e.g., Cyclotella minuta and Aulacoseira baicalensis) are the most resilient, whereas cosmopolitan taxa such as Nitzschia acicularis and Synedra acus are the least resilient. N. acicularis dissolves in the water column, but for other taxa, most dissolution takes place at the surface sediment-water interface. We use the data to develop a series of species-specific correction factors that allow the composition of the source populations to be reconstituted, and we argue that failure to take these processes into account can undermine the use of the diatom and biogenic silica record in Lake Baikal for palaeo-productivity and palaeoclimate reconstruction.

Linking the Modern Distribution of Biogenic Proxies in High Arctic Greenland Shelf Sediments to Sea Ice, Primary Production, and Arctic-Atlantic Inflow

NASA Astrophysics Data System (ADS)

Limoges, Audrey; Ribeiro, Sofia; Weckström, Kaarina; Heikkilä, Maija; Zamelczyk, Katarzyna; Andersen, Thorbjørn J.; Tallberg, Petra; Massé, Guillaume; Rysgaard, Søren; Nørgaard-Pedersen, Niels; Seidenkrantz, Marit-Solveig

2018-03-01

The eastern north coast of Greenland is considered to be highly sensitive to the ongoing Arctic warming, but there is a general lack of data on modern conditions and in particular on the modern distribution of climate and environmental proxies to provide a baseline and context for studies on past variability. Here we present a detailed investigation of 11 biogenic proxies preserved in surface sediments from the remote High Arctic Wandel Sea shelf, the entrance to the Independence, Hagen, and Danmark fjords. The composition of organic matter (organic carbon, C:N ratios, δ13C, δ15N, biogenic silica, and IP25) and microfossil assemblages revealed an overall low primary production dominated by benthic diatoms, especially at the shallow sites. While the benthic and planktic foraminiferal assemblages underline the intrusion of chilled Atlantic waters into the deeper parts of the study area, the distribution of organic-walled dinoflagellate cysts is controlled by the local bathymetry and sea ice conditions. The distribution of the dinoflagellate cyst Polarella glacialis matches that of seasonal sea ice and the specific biomarker IP25, highlighting the potential of this species for paleo sea ice studies. The information inferred from our multiproxy study has important implications for the interpretation of the biogenic-proxy signal preserved in sediments from circum-Arctic fjords and shelf regions and can serve as a baseline for future studies. This is the first study of its kind in this area.

Calibration of diatom-pH-alkalinity methodology for the interpretation of the sedimentary record in Emerald Lake Integrated watershed study. Final report, 6 May 1985-10 October 1986

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holmes, R.W.

1986-10-10

The present study was designed to establish quantitative relationships between lake air-equilibrated pH, alkalinity, and diatoms occurring in the surface sediments in high-elevation Sierra Nevada Lakes. These relationships provided the necessary information to develop predictive equations relating lake pH to the composition of surface-sediment diatom assemblages in 27 study lakes. Using the Hustedt diatom pH classification system, Index B of Renberg and Hellberg, and multiple linear regression analysis, two equations were developed which predict lake pH from the relative abundance of sediment diatoms occurring in each of four diatom pH groupings.

Hydroecological Connections: Hyporheic Zone Weathering of Silicate Minerals Controls Diatom Biodiversity in Microbial Mats in Glacial Meltwater Streams of the McMurdo Dry Valleys, Antarctica

NASA Astrophysics Data System (ADS)

McKnight, D. M.; Dyson, I.; Esposito, R. M.; Gooseff, M. N.; Lyons, W. B.; Welch, K. A.

2015-12-01

The McMurdo Dry Valleys of Antarctica is comprised of alpine and terminal glaciers, large expanses of patterned ground, and ice-covered lakes in the valley floors, which are linked by glacial meltwater streams that flow during the austral summer. As part of the McMurdo Dry Valleys Long-Term Ecological research project, we have observed stream ecosystem response to a sustained 18 year cool period with low flows, which has been recently interrupted by three "flood events" during sunny, warm summers. Many of these streams contain thriving microbial mats comprised of cyanobacteria and endemic diatoms, the most diverse group of eukaryotic organisms in the valleys. Of the 45 diatom taxa, some common taxa are heavily silicified, Hantzschia amphioxys f. muelleri, while others are only lightly silicified. By comparing diatom communities in streams which flow every summer with those in streams that only flow during flood events, we found that hydrologic flow regime acts as a strong environmental filter on diatom community composition. Following the first flood event in 2001/02, mat biomass was two-fold lower due to scouring and recovered over several years, with lesser declines following the subsequent floods. In the longer streams, the diatom community composition remained stable through the flood events, whereas in two of the shorter streams, Green and Bowles Creeks, the diatom community shifted after the first flood event to a greater abundance of lightly silicified taxa. Water quality monitoring and reactive transport modeling have shown that rapid weathering of silicate minerals in the hyporheic zone accounts for the downstream increases in Si concentration which are observed in the longer streams. One mechanism driving this greater abundance of lightly silicified diatoms in shorter streams could be the greater dilution of the Si supply from hyporheic weathering in shorter streams under high flows. Given that the stream diatom community is well preserved in the 40,000-year sediment record from the receiving lake, greater understanding of hydrologic and biogeochemical controls on diatom community composition provides insight into the evolution of the lakes and geologic history of the region.

First report of Nitzschia navis-varingica in the Mediterranean Sea and growth stimulatory effects of Nitzschia navis-varingica, Chrysochromulina alifera and Heterocapsa pygmaea on different mammalian cell types.

PubMed

Ayaz, Furkan; Eker-Develi, Elif; Sahin, Merve

2018-05-28

A benthic diatom, Nitzschia navis-varingica was found for the first time in the Mediterranean Sea. Effects of this diatom species together with the haptophyte Chrysochromulina alifera and the dinoflagellate Heterocapsa pygmaea isolated from the northeastern Mediterranean Sea coast on prostate, breast cancer and fibroblast cell lines were investigated. Algal extracts did not exert any toxic effect on these cell lines and it had growth stimulatory impact on the cells without discrimination of cell type. Our results suggest potential use of these algal extracts in tissue repair and cell growth boosting additive in the diet of humans as well as animals. Moreover, these algal extracts have potential to be used as natural resource in the skin vitalizing creams of cosmetics industry and as wound healing agents in the atopic drugs.

Coherence between sedimentary leaf wax hydrogen isotopes and diatom assemblages from Lake E5 in northern Alaska

NASA Astrophysics Data System (ADS)

Daniels, W.; Russell, J. M.; Huang, Y.; Giblin, A.

2013-12-01

We present a 4500 year lacustrine record of compound-specific hydrogen isotopes (C28 alkanoic acid; δDwax) from the northern foothills of the Brooks Range, AK. This compound is characteristic of terrestrial plant leaf waxes and has been demonstrated to record variation in source water δD. The δDwax in our core varies between -265 and -254‰. We interpret more enriched values to reflect higher summer air temperatures. Using the relationship between δD-precipitation and temperature at the Barrow GNIP station, we calculate that temperature varied by 4.4 °C over this time span. Prior to 3.8 ka, summer temperatures were comparable to present day. There was a cooling trend from 3.8 to 1.5 ka followed by increasing temperatures until approximately 90 years ago. Slight cooling is seen in the surface-most sediments. This record is remarkably similar to a δ18O-cellulose record, interpreted to reflect changes in effective moisture, from nearby Meli Lake (Anderson et al. Quaternary Research 2001). Cool/wet and warm/dry are predominant weather conditions on an interannual basis in modern Alaska, and this appears to be the case over longer time scales through the late Holocene. We also examined the effect of temperature fluctuations on lake ecosystem structure by comparing sedimentary diatom assemblages to δDwax. The δDwax is positively correlated with the planktonic:benthic diatom ratio (r2=0.70). Experimental nutrient additions to Arctic lakes have resulted in increased planktonic production at the expense of benthic production, and so our result supports the hypothesis that lake nutrient budgets are linked to summer temperature in the region. The relative abundance of stratification-loving Cyclotella (Kutzing) Brebisson is positively correlated with δDwax (r2=0.40), while tachyplanktonic Aulacoseira Thwaites is negatively correlated with δDwax, (r2=0.55) supporting our interpretation of δDwax as a temperature signal.

Diatom community structure on in-service cruise ship hulls.

PubMed

Hunsucker, Kelli Zargiel; Koka, Abhishek; Lund, Geir; Swain, Geoffrey

2014-10-01

Diatoms are an important component of marine biofilms found on ship hulls. However, there are only a few published studies that describe the presence and abundance of diatoms on ships, and none that relate to modern ship hull coatings. This study investigated the diatom community structure on two in-service cruise ships with the same cruise cycles, one coated with an antifouling (AF) system (copper self-polishing copolymer) and the other coated with a silicone fouling-release (FR) system. Biofilm samples were collected during dry docking from representative areas of the ship and these provided information on the horizontal and vertical zonation of the hull, and intact and damaged coating and niche areas. Diatoms from the genera Achnanthes, Amphora and Navicula were the most common, regardless of horizontal ship zonation and coating type. Other genera were abundant, but their presence was more dependent on the ship zonation and coating type. Samples collected from damaged areas of the hull coating had a similar community composition to undamaged areas, but with higher diatom abundance. Diatom fouling on the niche areas differed from that of the surrounding ship hull and paralleled previous studies that investigated differences in diatom community structure on static and dynamically exposed coatings; niche areas were similar to static immersion and the hull to dynamic immersion. Additionally, diatom richness was greater on the ship with the FR coating, including the identification of several new genera to the biofouling literature, viz. Lampriscus and Thalassiophysa. These results are the first to describe diatom community composition on in-service ship hulls coated with a FR system. This class of coatings appears to have a larger diatom community compared to copper-based AF systems, with new diatom genera that have the ability to stick to ship hulls and withstand hydrodynamic forces, thus creating the potential for new problematic species in the biofilm.

Diatom assemblage responses to changing environment in the conspicuously eutrophic Kiuruvesi lake route, central-eastern Finland

NASA Astrophysics Data System (ADS)

Tammelin, Mira; Kauppila, Tommi

2016-04-01

Lakes and their water quality have been affected by anthropogenic actions for centuries. The most intensive changes have often occurred since the mid-19th century. Industrialization, modern agriculture, forest ditching and artificial lowering of water level are examples of these changes that have usually resulted in the deterioration of lake water quality. Many organisms, such as diatoms, are sensitive to these changes in their environmental conditions. Therefore, a marked species turnover is often seen between the pre and post human impact diatom assemblages. This turnover can be rapidly assessed simultaneously from many lakes by using multivariate methods and top-bottom sampling. Our study area consists of three adjacent lake routes in the grass cultivation and dairy production area of central-eastern Finland, where slash-and-burn cultivation and artificial water level lowering were common practice during the past centuries. The centermost Iisalmi lake route is particularly interesting because of the conspicuously eutrophic lakes in its Kiuruvesi subroute. We used the top-bottom approach to sample pre and post human impact samples from 47 lakes (50 sampling sites) located in the three lake routes. In addition, stratigraphic samples from the long cores of three lakes (one larger central basin and two small upstream lakes) in the Kiuruvesi subroute were studied in more detail. Multivariate methods were used to assess diatom assemblage change within the long cores and between the pre-disturbance and modern samples. The results indicate that most study lakes have undergone a marked shift in their diatom assemblages since the onset of human impact in the area. The lake routes are characterized by differing pre-impact diatom assemblages. However, human influence has reduced their natural variation. Similar diatom species are common in the modern samples of the heavily impacted lakes in all three lake routes. The detailed examination of the diatom assemblage turnover in the three Kiuruvesi route lakes portrays different trajectories in each lake. The central basin has changed less than the upstream lakes. Two of the lakes have assemblage change trajectories that suggest increased nutrients, electrical conductivity, and pH. Unexpectedly, one of the upstream lakes shows an opposite trajectory, which might result from lowering water depth and improved living conditions for benthic diatoms.

The new diatom training set from the Polish Baltic coast and diatom-based transfer functions as a tool for understanding past changes in the southern Baltic coastal lakes

NASA Astrophysics Data System (ADS)

Lutyńska, Monika; Szpikowska, Grażyna; Woszczyk, Michał; Suchińska, Anita; Burchardt, Lubomira; Messyasz, Beata

2014-05-01

The transfer function method has been developed as a useful tool for reconstruction of the past environmental changes. It is based on the assumption that the modern species, which ecological requirements are known, can be used to quantitative reconstructions of the past changes. The aim of the study was to gather test sets and to build diatom-based transfer function, which can be used to reconstruct changes in the trophic state and salinity in the coastal lakes on the Polish Baltic coast. In the previous years there were several attempts made to reconstruct these parameters in lagoonal waters on the Baltic coasts in Germany, Denmark, Finland, Netherland, Sweden and Norway. But so far there is no diatom test set and transfer function was built for the Polish coastal lakes. We sample diatoms form 12 lakes located along the polish Baltic coast. At the same time we monitor the physical-chemical conditions in the lakes, which includes lake water chemical composition (chlorides, phosphorous and sulphur), pH, salinity, conductivity, temperature, dissolved oxygen. We collect samples form the lakes as well as from the Baltic Sea and we analyse the whole phytoplankton composition, however the special focus in put on diatoms. The results of the analysis show seasonal changes in the chemical and physical water properties. The diatom assemblage composition and species frequency also changed significantly. This study is a contribution to the projects: NN 306 064 640 financed by National Science Centre, Poland and Virtual Institute ICLEA (Integrated Climate and Landscape Evolution Analysis) funded by the Helmholtz Association.

Inhibitory effect of polyunsaturated aldehydes (PUAs) on the growth of the toxic benthic dinoflagellate Ostreopsis cf. ovata.

PubMed

Pichierri, Salvatore; Pezzolesi, Laura; Vanucci, Silvana; Totti, Cecilia; Pistocchi, Rossella

2016-10-01

Diatoms have been shown to produce and release a wide range of secondary metabolites that mediate interactions between individuals of different species. Among these compounds, different types of fatty acid derived long-chained polyunsaturated aldehydes (PUAs) have been related to multiple functions such as intra- or interspecific signals and adverse effect on the reproduction of marine organisms. Several studies have reported changes on growth, cell membrane permeability, flow cytometric properties and cell morphology in phytoplankton organisms exposed to PUAs, but little information is available on the effect of these compounds on benthic microalgae. Ostreopsis cf. ovata is a toxic benthic dinoflagellate which causes massive blooms along the Mediterranean coasts typically during the late summer period. In this study the effects of three toxic PUAs known to be produced by several algae (2E,4E-decadienal, 2E,4E-octadienal and 2E,4E-heptadienal) on the growth, cytological features and cell morphology of O. cf. ovata were investigated. Our results show a clear decrease of O. cf. ovata growth with longer-chain molecules than with shorter-chain ones, confirmed also by EC50 values calculated at 48h for 2E,4E-decadienal and 2E,4E-octadienal (6.6±1.5, 17.9±2.6μmolL(-1) respectively) and at 72h for 2E,4E-heptadienal (18.4±0.7μmolL(-1)). Moreover, morphological analysis highlighted up to 79% of abnormal forms of O. cf. ovata at the highest concentrations of 2E,4E-decadienal tested (9, 18 and 36μmolL(-1)), a gradual DNA degradation and an increase of lipid droplets with all tested PUAs. Further studies are needed to better clarify the interactions between diatoms and O. cf. ovata, especially on bloom-forming dynamics. Copyright © 2016 Elsevier B.V. All rights reserved.

Seasonal trends in the pigment and amino acid compositions of sinking particles in biogenic CaCO 3 and SiO 2 dominated regions of the Pacific sector of the Southern Ocean along 170°W

NASA Astrophysics Data System (ADS)

Ingalls, Anitra E.; Liu, Zhanfei; Lee, Cindy

2006-05-01

We investigated amino acids and pigments in particles settling through the water column of the Southern Ocean and showed that spatial and temporal differences in phytoplankton source and consumer population influence sinking particle composition. Sediment traps were deployed along 170°W from November 1996 to March 1998 as part of the United States Joint Global Ocean Flux Study (US JGOFS) Antarctic Environment Southern Ocean Process Study (AESOPS) program. Peak fluxes of amino acids and pigments occurred during austral spring and summer (November-April) and were highest in the Antarctic Circumpolar Current (ACC). Compositional changes in pigments and total hydrolyzed amino acids demonstrate how the source of sinking particles varies with latitude and suggest that sinking material was most degraded in relatively diatom-depleted regions and toward the end of the high-flux period (February-March). At the Subantarctic Front, high proportions of pheophytin and β-alanine illustrate the important role of microbes in degradation. Further south at the Antarctic Polar Front, glycine, pyropheophorbide, and pheophorbide enrichments reflected a greater contribution of diatoms and greater processing by zooplankton grazers. Even further south in the ACC, enrichments of the diatom pigment fucoxanthin, diatom cell wall indicators glycine and serine, and diatom frustule-bound amino acids suggested the settling of empty frustules and aggregates. Despite being protected by the mineral, diatom-bound amino acids were not preferentially preserved between shallow and deep traps, possibly because of silica dissolution and a relatively small amount of organic carbon remineralization. Our results show that organic matter at diatom-rich stations is removed by mechanisms that do not result in the appearance of organic matter degradation indicators. Recent observations that calcium carbonate has a higher carrying capacity for sinking organic matter than silica may be related to diatom silicification, physiological status and decomposition pathway.

Spatio-temporal dynamics in phytobenthos structural properties reveal insights into agricultural catchment dynamics and nutrient fluxes

NASA Astrophysics Data System (ADS)

Reaney, S. M.; Snell, M. A.; Barker, P. A.; Aftab, A.; Barber, N. J.; Benskin, C.; Burke, S.; Cleasby, W.; Haygarth, P.; Jonczyk, J. C.; Owen, G. J.; Perks, M. T.; Quinn, P. F.; Surridge, B.

2016-12-01

Low order streams are spatially extensive, temporally dynamic, systems within the agricultural landscape. This dynamism extends to the aquatic communities within these streams, including the phytobentos, which demonstrates considerable resilience to diffuse anthropogenic nutrient pressures and changing climate dynamics. The phytobenthos community can substantially contribute to the food web, in particular diatoms, which dominate photo-autotrophic assemblages in low order streams. Diatoms are widely used in ecological monitoring because of their high sensitivity to environmental condition, but knowledge is limited on the ecological effects of winter disturbances and variance introduced by multiple and interacting pressures (N, P, sediment), introducing bias in understanding temporal dynamics in benthic diatom communities. Using the environmental time series data from long term monitoring within the River Eden Demonstration Test Catchment programme, we assess the impact of multiple hydro-chemical stressors on phytobenthic community resilience, and synthesize the impact of an extreme winter event. Monthly data from diatom communities collected in the Eden DTC from March 2011 to present show that river flow, strongly coupled to precipitation, is a key driver of these communities. Discharge has a direct effect on communities through scouring, but is also tightly correlated to nutrient delivery, such that 80% of the annual TP load arrives in 10% of the time. Trophic Diatom Index (TDI) values demonstrated considerable resilience by the stability of inter-monthly TDI scores over 5 seasonal cycles against the characterised highly variable hydrological regime. This research demonstrates that well characterised winter disturbances are critical to understanding drivers of aquatic dynamics. This has implications for catchment diffuse pollution policy, farm management and economics, given the climate projections of increases in frequency and intensity of extreme winter events, which may alter instream nutrient fluxes.

Relations between water physico-chemistry and benthic algal communities in a northern Canadian watershed: defining reference conditions using multiple descriptors of community structure.

PubMed

Thomas, Kathryn E; Hall, Roland I; Scrimgeour, Garry J

2015-09-01

Defining reference conditions is central to identifying environmental effects of anthropogenic activities. Using a watershed approach, we quantified reference conditions for benthic algal communities and their relations to physico-chemical conditions in rivers in the South Nahanni River watershed, NWT, Canada, in 2008 and 2009. We also compared the ability of three descriptors that vary in terms of analytical costs to define algal community structure based on relative abundances of (i) all algal taxa, (ii) only diatom taxa, and (iii) photosynthetic pigments. Ordination analyses showed that variance in algal community structure was strongly related to gradients in environmental variables describing water physico-chemistry, stream habitats, and sub-watershed structure. Water physico-chemistry and local watershed-scale descriptors differed significantly between algal communities from sites in the Selwyn Mountain ecoregion compared to sites in the Nahanni-Hyland ecoregions. Distinct differences in algal community types between ecoregions were apparent irrespective of whether algal community structure was defined using all algal taxa, diatom taxa, or photosynthetic pigments. Two algal community types were highly predictable using environmental variables, a core consideration in the development of Reference Condition Approach (RCA) models. These results suggest that assessments of environmental impacts could be completed using RCA models for each ecoregion. We suggest that use of algal pigments, a high through-put analysis, is a promising alternative compared to more labor-intensive and costly taxonomic approaches for defining algal community structure.

Composition, buoyancy regulation and fate of ice algal aggregates in the Central Arctic Ocean.

PubMed

Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L; Glud, Ronnie N; Boetius, Antje

2014-01-01

Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8-35 and 9-40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m(-2), maintaining an estimated net primary production of 0.4-40 mg C m(-2) d(-1), and accounted for 3-80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities.

Composition, Buoyancy Regulation and Fate of Ice Algal Aggregates in the Central Arctic Ocean

PubMed Central

Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L.; Glud, Ronnie N.; Boetius, Antje

2014-01-01

Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8–35 and 9–40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m−2, maintaining an estimated net primary production of 0.4–40 mg C m−2 d−1, and accounted for 3–80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities. PMID:25208058

Authigenic Nd isotope record of North Pacific Intermediate Water formation and boundary exchange on the Bering Slope

NASA Astrophysics Data System (ADS)

Jang, Kwangchul; Huh, Youngsook; Han, Yeongcheol

2017-01-01

The Bering Sea is a potential location for the formation of the North Pacific Intermediate Water (NPIW), which drives the global ocean circulation as a counterpart to the North Atlantic Deep Water (NADW). To evaluate the NPIW-NADW seesaw hypothesis, we reconstructed the long-term variation of the bottom water Nd isotopic composition at site U1345 on the Bering Slope by extracting authigenic Fe-Mn oxyhydroxide from bulk sediments. We examined six different extractions in order to ensure that authentic seawater composition is recovered. For Bering Slope sediments whose typical carbonate content is less than 5% (average 2%), the most reliable results are obtained if the decarbonation step is omitted and a low reagent-to-sediment ratio is adopted. The reconstructed authigenic εNd record for the last 520 kyr exhibits large temporal variations depending on whether the NPIW formation or the boundary exchange process is dominant. Periods of radiogenic εNd can be attributed to NPIW formation triggered by brine rejection, as evidenced by the difference in δ18O of benthic foraminifera between sites (Δδ18Obf), high % sea-ice related diatoms, and low abundance of Bulimina aff. Exilis (low-oxygen deep fauna). Diminished supply of unradiogenic Nd from boundary exchange seems to intensify these radiogenic peaks. On the other hand, the unradiogenic εNd intervals can be attributed to stagnant bottom water conditions, as can be deduced from the Δδ18Obf values, low % sea-ice related diatoms, abundant B. aff. Exilis, and laminations. When there is no NPIW formation, the continental margin sediments are exposed to boundary exchange for a longer period of time, leading to release of unradiogenic Nd. The mid-MIS 6 and mid-MIS 5 are exceptions in that NPIW formation occurred yet the εNd compositions are unradiogenic. NPIW formation and cold climate (closed Bering Strait) are not always correlated. Comparison against εNd records of the South Atlantic suggests only an ambiguous NPIW-NADW seesaw for the last 200 kyr.

Integrated watershed study: An investigation of the biota in the Emerald Lake system and stream-channel experiments. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cooper, S.D.; Kratz, K.; Holmes, R.W.

1988-05-05

As part of the Integrated Watershed Study in the vicinity of Emerald Lake, Sequoia National Park, investigators conducted baseline monitoring of benthic invertebrates in the inflow streams and the outflow stream. During summer 1986 they carried out a series of acidification experiments in artificial stream channels located in the drainage of the Marble Fork of the Kaweah River. Twelve channels (2.4 m x 20 cm x 20 cm) were stocked with natural substrates, algae and invertebrates. In the treatment channels the pH was reduced to 4.6 and 5.2, using a mixture of nitric and sulfuric acids. Measurements of benthic densities,more » drift rates and algal densities were made before, during and after each acid treatment of 8 hours duration. Diatom populations declined in the acidified channels, while other periphyton species actually increased with the treatment.« less

Distribution of phytobenthos in the Yakima River basin, Washington, in relation to geology, land use, and other environmental factors

USGS Publications Warehouse

Leland, Harry V.

1995-01-01

Benthic-algal distributions in the Yakima River, Washington, basin were, examined in relation to geology, land use, water chemistry, and stream habitat using indicator-species classification (TWINSPAN) and canonical correspondence analysis (CCA). Algal assemblages identified byTWINSPAN were each associated with a narrow range of water-quality conditions. In the Cascade geologic province, where timber harvest and grazing are the dominant land uses, differences in community structure (CCA site scores) and concentrations of major ions (Ca and Mg) and nutrients (solute P, SiO2 and inorganic N) varied with dominant rock type of the basin. In agricultural areas of the Columbia Plateau province, differences in phytobenthos structure were based primarily on the degree of enrichment of dissolved solids, inorganic N, and solute P from irrigation-return flows and subsurface drainage. Habitat characteristics strongly correlated with community structure included reach altitude, turbidity, substratum embeddedness (Columbia Plateau), large woody-debris density (Cascade Range), and composition and density of the riparian vegetation. Algal biomass (AFDM) correlated with composition and density of the riparian vegetation but not with measured chemical-constituent concentrations. Nitrogen limitation in streams of the Cascade Range favored nitrogen-fixing blue-green algae and diatoms with endosymbiotic blue-greens, whereas nitrogen heterotrophs were abundant in agricultural areas of the Columbia Plateau.

Distribution of phytobenthos in the Yakima River basin, Washington, in relation to geology, land use and other environmental factors

USGS Publications Warehouse

Leland, Harry V.

1995-01-01

Benthic-algal distributions in the Yakima River, Washington, basin were, examined in relation to geology, land use, water chemistry, and stream habitat using indicator-species classification (TWINSPAN) and canonical correspondence analysis (CCA). Algal assemblages identified byTWINSPAN were each associated with a narrow range of water-quality conditions. In the Cascade geologic province, where timber harvest and grazing are the dominant land uses, differences in community structure (CCA site scores) and concentrations of major ions (Ca and Mg) and nutrients (solute P, SiO2 and inorganic N) varied with dominant rock type of the basin. In agricultural areas of the Columbia Plateau province, differences in phytobenthos structure were based primarily on the degree of enrichment of dissolved solids, inorganic N, and solute P from irrigation-return flows and subsurface drainage. Habitat characteristics strongly correlated with community structure included reach altitude, turbidity, substratum embeddedness (Columbia Plateau), large woody-debris density (Cascade Range), and composition and density of the riparian vegetation. Algal biomass (AFDM) correlated with composition and density of the riparian vegetation but not with measured chemical-constituent concentrations. Nitrogen limitation in streams of the Cascade Range favored nitrogen-fixing blue-green algae and diatoms with endosymbiotic blue-greens, whereas nitrogen heterotrophs were abundant in agricultural areas of the Columbia Plateau.

Assessing contamination in Great Lakes sediments using benthic invertebrate communities and the sediment quality triad approach

USGS Publications Warehouse

Canfield, Timothy J.; Dwyer, F. James; Fairchild, James F.; Haverland, Pamela S.; Ingersoll, Christopher G.; Kemble, Nile E.; Mount, David R.; La Point, Thomas W.; Burton, G. Allen; Swift, M. C.

1996-01-01

Sediments in many Great Lakes harbors and tributary rivers are contaminated. As part of the USEPA's Assessment and Remediation of Contaminated Sediment (ARCS) program, a number of studies were conducted to determine the nature and extent of sediment contamination in Great Lakes Areas of Concern (AOC). This paper describes the composition of benthic invertebrate communities in contaminated sediments and is one in a series of papers describing studies conducted to evaluate sediment toxicity from three AOC's (Buffalo River, NY; Indiana Harbor, IN; Saginaw River, MI), as part of the ARCS Program. Oligochaeta (worms) and Chironomidae (midge) comprised over 90% of the benthic invertebrate numbers in samples collected from depositional areas. Worms and midge consisted of taxa identified as primarily contaminant tolerant organisms. Structural deformities of mouthparts in midge larvae were pronounced in many of the samples. Good concurrence was evident between measures of laboratory toxicity, sediment contaminant concentration, and benthic invertebrate community composition in extremely contaminated samples. However, in moderately contaminated samples, less concordance was observed between the benthos community composition and either laboratory toxicity test results or sediment contaminant concentration. Laboratory sediment toxicity tests may better identify chemical contamination in sediments than many commonly used measures of benthic invertebrate community composition. Benthic measures may also reflect other factors such as habitat alteration. Evaluation of non-contaminant factors are needed to better interpret the response of benthic invertebrates to sediment contamination.

Size-dependent distribution and feeding habits of Terebralia palustris in mangrove habitats of Gazi Bay, Kenya

NASA Astrophysics Data System (ADS)

Pape, Ellen; Muthumbi, Agnes; Kamanu, Chomba Peter; Vanreusel, Ann

2008-03-01

The gastropod Terebralia palustris often dominates the surface of muddy to sandy substrates of intertidal mudflats and mangrove forests, where they clearly destabilize the sediment. In the present study, it was investigated whether and to what extent the behaviour of juvenile and adult snails differs among habitats (mudflat vs. mangrove stand) in a Sonneratia alba mangal at Gazi Bay, Kenya. For this purpose we: (1) examined their distribution along three land-sea transects; and (2) applied stable isotope analysis to determine the feeding patterns of different-sized snails from the mangrove and mudflat habitats. Additionally, we investigated if these gastropods exert an impact on microphytobenthic (diatom) biomass, and whether this is size-dependent. The latter objective was met by either enclosing or excluding different-sized snails from experimental cages on the intertidal mudflat and the subsequent assessment of a change in pigment concentration of the sediment surface. In agreement with several previous studies conducted in other mangroves and geographical locations, a spatial segregation was demonstrated between juveniles (more common on the mudflat) and adults (more common in the mangrove forest). On the intertidal mudflat juveniles avoided sediment patches characterized by highly saline water in intertidal pools and a high mud content, while adults tended to dwell on substrates covered by a high amount of leaf litter. Stable carbon isotope analysis of the foot tissue of snails sampled from the S. alba stand and the mudflat indicated a transition in food source when a shell length of 51 mm is reached. Considering the δ13C value of juveniles, it seems they might be selecting for microphytobenthos, which might explain their preference for the mudflat. The diet of size classes found in both habitats did not differ significantly, although juveniles inhabiting the mangrove forest were slightly more depleted in 13C compared to those residing on the mudflat. Assuming juveniles feed on benthic microalgae and considering the lower microalgal biomass inside the mangrove forest, this may be a consequence of a higher contribution of other, more 13C depleted organic carbon sources, like phytoplankton, to their diet. Experimental results indicate a negative, but insignificant, impact on benthic diatom biomass by juveniles (due to grazing) and adults (due to physical disturbance). This finding seems to be in agreement with the results of the stable carbon isotope analysis, strongly suggesting the selective feeding of juvenile T. palustris on benthic diatoms.

The Terrestrial Paleoclimatic Record of the Late Quaternary as Revealed by Drilling Lake Titicaca, Peru/Bolivia

NASA Astrophysics Data System (ADS)

Baker, P. A.; Fritz, S. C.; Seltzer, G. O.; Ballantyne, A. P.; Rigsby, C. A.

2004-12-01

Seven drill cores were recovered from Lake Titicaca during the NSF/ICDP/DOSECC drilling expedition of 2001; our most detailed multi-proxy analyses have been done on Core 2B raised from 232 m water depth in the central basin of the lake. This site was drilled to 139 mblf with 141 m of total sediment recovered (101%). The recovered sediments consist of two main lithologies, organic- and inorganic-carbon-rich (often-laminated) muds that alternate with detrital-rich muds. These lithologies represent respectively low and high lakestand deposits. Proxies for water level include planktic-to-benthic diatom ratio, sedimentary carbonate content, and stable isotopic ratio of organic carbon. There are six highstand intervals separated by five lowstand intervals indicating that the level and volume of Lake Titicaca underwent several large changes during the late Quaternary. We infer from high values of magnetic susceptibility in most highstand muds that glacial advances in the surrounding Andes coincided with periods of relative wetness. During the most recent lowstand, in the early and middle Holocene, Lake Titicaca fell to 85 m below its modern level, salinity increased several-fold, and the downstream Salar de Uyuni desiccated. By contrast, throughout the LGM from ca. 25,000 cal BP to 15,000 cal BP, Lake Titicaca was deep and fresh, and overflowed southward to the Salar de Uyuni. Prior to the LGM, back to ca. 53,000 BP, the lake was predominantly fresh and overflowing. Pulses of increased benthic diatom abundance and inorganic carbon concentration during that time were likely due to episodes of downslope transport. We believe (based on U-Th dates of authigenic carbonate layers) that the penultimate lowstand of Lake Titicaca (seismic evidence indicates a lake level 200 m lower than today) was coincident with MIS 5. We recovered sediments recording three older lowstands, each separated by periods in which the lake freshened dramatically and when glaciers apparently advanced in the Andes. We tentatively correlate these lowstands with MIS 7, 9, and 11. The high abundance of benthic diatoms in the lowermost 40 m of drill core may imply that the Altiplano was persistently drier than today, prior to and including MIS 9. Alternatively, basin morphometry may have been significantly different than today because of geomorphic or tectonic effects. This period apparently coincides with a period when the Salar de Uyuni was mostly dry and dominated by salt deposition.

New species of Eunotia from small isolated wetlands in Florida

EPA Science Inventory

Diatom species composition of small wetlands is diverse and unique due to a plethora of spatial and temporal variables. Diatoms from small wetlands can contribute greatly to better understanding microbial biodiversity, distribution, dispersal and populations.

Differences between mono-generic and mixed diatom silicon isotope compositions trace present and past nutrient utilisation off Peru

NASA Astrophysics Data System (ADS)

Doering, Kristin; Ehlert, Claudia; Grasse, Patricia; Crosta, Xavier; Fleury, Sophie; Frank, Martin; Schneider, Ralph

2016-03-01

In this study we combine for the first time silicon (Si) isotope compositions of small mixed diatom species (δ30SibSiO2) and of large handpicked mono-generic (i.e. genus = Coscinodiscus) diatom samples (δ30SiCoscino) with diatom assemblages extracted from marine sediments in the Peruvian upwelling region in order to constrain present and past silicate utilisation. The extension of a previous core-top data set from the Peruvian shelf demonstrates that δ30SiCoscino values record near-complete Si utilisation, as these are similar to the isotopic composition of the subsurface source waters feeding the upwelling. In contrast, the δ30SibSiO2 of small mixed diatom species increase southward along the shelf as well as towards the shore. We attribute highest δ30SibSiO2 values partly to transient iron limitation but primarily to the gradual increase of Si isotope fractionation within the seasonal diatom succession, which are mainly recorded by small diatom species during intense bloom events. In contrast, lower δ30SibSiO2 values are related to initial Si isotope utilisation during periods of weak upwelling, when low Si(OH)4 concentrations do not permit intense blooms and small diatom species record substantially lower δ30Si signatures. As such, we propose that the intensity of the upwelling can be deduced from the offset between δ30SibSiO2 and δ30SiCoscino (Δ30Sicoscino-bSiO2), which is low for strong upwelling conditions and high for prevailing weak upwelling. We apply the information extracted from surface sediments to generate a record of the present-day main upwelling region covering the past 17,700 years and find that this location has also been characterized by a persistent offset (Δ30Sicoscino-bSiO2). By comparison with the diatom assemblages we show that the coastal upwelling system changed markedly between weak and strong upwelling conditions. In addition, our model calculations to quantify species-specific Si isotope fractionation effects based on the diatom assemblages indicate an overall minor influence that cannot explain the high amplitude in the measured δ30SibSiO2 record.

Increased benthic grazing: An alternative explanation for low phytoplankton biomass in northern San Francisco Bay during the 1976-1977 drought

USGS Publications Warehouse

Nichols, F.H.

1985-01-01

Among the consequences of extremely low river flow into northern San Francisco Bay during a two-year drought were (1) a gradual increase in salinity, (2) an unusual decline in chlorophyll a concentration, and (3) the upstream migration of estuarine benthic invertebrates to the normally brackish area of the bay. Total abundance in the benthos at a shallow monitoring site increased from a normal 2000 to greater than 20 000 individuals m-2 during the summer of 1977, presumably in response to the increased salinity. Estimated filtration rates derived from equations in the literature for one of the species, the suspended-feeding bivalve Mya arenaria ranged from 1 to 4 m3 m-2 day-1 during 1977 depending on abundance and mean size on sampling dates. Because water depth at this site is less than 2 m, Mya could have filtered all of the particles (including diatoms) from the water column on the order of once per day. Several other immigrant species undoubtedly contributed to the removal of particles from the near-bottom water as well. Increased benthic grazing, therefore, could have accounted for the anomalously low phytoplankton biomass observed during the drought. These results suggest that during periods of prolonged low river flow and increased salinity benthic food webs could become more important than planktonic food webs in the upper part of the estuary. ?? 1985.

Benthic Algal Community Structures and Their Response to Geographic Distance and Environmental Variables in the Qinghai-Tibetan Lakes With Different Salinity

PubMed Central

Yang, Jian; Jiang, Hongchen; Liu, Wen; Wang, Beichen

2018-01-01

Uncovering the limiting factors for benthic algal distributions in lakes is of great importance to understanding of their role in global carbon cycling. However, limited is known about the benthic algal community distribution and how they are influenced by geographic distance and environmental variables in alpine lakes. Here, we investigated the benthic algal community compositions in the surface sediments of six lakes on the Qinghai-Tibetan Plateau (QTP), China (salinity ranging from 0.8 to 365.6 g/L; pairwise geographic distance among the studied lakes ranging 8–514 km) employing an integrated approach including Illumina-Miseq sequencing and environmental geochemistry. The results showed that the algal communities of the studied samples were mainly composed of orders of Bacillariales, Ceramiales, Naviculales, Oscillatoriales, Spirulinales, Synechococcales, and Vaucheriales. The benthic algal community compositions in these QTP lakes were significantly (p < 0.05) correlated with many environmental (e.g., dissolved inorganic and organic carbon, illumination intensity, total nitrogen and phosphorus, turbidity and water temperature) and spatial factors, and salinity did not show significant influence on the benthic algal community structures in the studied lakes. Furthermore, geographic distance showed strong, significant correlation (r = 0.578, p < 0.001) with the benthic algal community compositions among the studied lakes, suggesting that spatial factors may play important roles in influencing the benthic algal distribution. These results expand our current knowledge on the influencing factors for the distributions of benthic alga in alpine lakes. PMID:29636745

Neutral processes and species sorting in benthic microalgal community assembly: effects of tidal resuspension.

PubMed

Plante, Craig J; Fleer, Virginia; Jones, Martin L

2016-10-01

Benthic microalgae (BMA) provide vital food resources for heterotrophs and stabilize sediments with their extracellular secretions. A central goal in ecology is to understand how processes such as species interactions and dispersal, contribute to observed patterns of species abundance and distribution. Our objectives were to assess the effects of sediment resuspension on microalgal community structure. We tested whether taxa-abundance distributions could be predicted using neutral community models (NCMs) and also specific hypotheses about passive migration: (i) As migration decreases in sediment patches, BMA α-diversity will decrease, and (ii) As migration decreases, BMA community dissimilarity (β-diversity) will increase. Co-occurrence indices (checkerboard score and variance ratio) were also computed to test for deterministic factors, such as competition and niche differentiation, in shaping communities. Two intertidal sites (mudflat and sand bar) differing in resuspension regime were sampled throughout the tidal cycle. Fluorometry and denaturing gradient gel electrophoresis were utilized to investigate diatom community structure. Observed taxa-abundances fit those predicted from NCMs reasonably well (R 2 of 0.68-0.93), although comparisons of observed local communities to artificial randomly assembled communities rejected the null hypothesis that diatom communities were assembled solely by stochastic processes. No co-occurrence tests indicated a significant role for competitive exclusion or niche partitioning in microalgal community assembly. In general, predictions about relationships between migration and species diversity were supported for local community dynamics. BMA at low tide (lowest migration) exhibited reduced α-diversity as compared to periods of immersion at both mudflat and sand bar sites. β-diversity was higher during low tide emersion on the mudflat, but did not differ temporally at the sand bar site. In between-site metacommunity comparisons, low- and high-resuspension sites exhibited distinct community compositions while the low-energy mudflats contained higher microalgal biomass and greater α-diversity. To our knowledge this is the first study to test the relevance of neutral processes in structuring marine microalgal communities. Our results demonstrate a prominent role for stochastic factors in structuring local BMA community assembly, although unidentified nonrandom processes also appear to play some role. High passive migration, in particular, appears to help maintain species diversity and structure communities in both sand and muddy habitats. © 2016 Phycological Society of America.

Flow directionality, mountain barriers and functional traits determine diatom metacommunity structuring of high mountain streams.

PubMed

Dong, Xiaoyu; Li, Bin; He, Fengzhi; Gu, Yuan; Sun, Meiqin; Zhang, Haomiao; Tan, Lu; Xiao, Wen; Liu, Shuoran; Cai, Qinghua

2016-04-19

Stream metacommunities are structured by a combination of local (environmental filtering) and regional (dispersal) processes. The unique characters of high mountain streams could potentially determine metacommunity structuring, which is currently poorly understood. Aiming at understanding how these characters influenced metacommunity structuring, we explored the relative importance of local environmental conditions and various dispersal processes, including through geographical (overland), topographical (across mountain barriers) and network (along flow direction) pathways in shaping benthic diatom communities. From a trait perspective, diatoms were categorized into high-profile, low-profile and motile guild to examine the roles of functional traits. Our results indicated that both environmental filtering and dispersal processes influenced metacommunity structuring, with dispersal contributing more than environmental processes. Among the three pathways, stream corridors were primary pathway. Deconstructive analysis suggested different responses to environmental and spatial factors for each of three ecological guilds. However, regardless of traits, dispersal among streams was limited by mountain barriers, while dispersal along stream was promoted by rushing flow in high mountain stream. Our results highlighted that directional processes had prevailing effects on metacommunity structuring in high mountain streams. Flow directionality, mountain barriers and ecological guilds contributed to a better understanding of the roles that mountains played in structuring metacommunity.

Spatio-Temporal Variation in Effects of Upwelling on the Fatty Acid Composition of Benthic Filter Feeders in the Southern Benguela Ecosystem: Not All Upwelling Is Equal

PubMed Central

McQuaid, Christopher David; Noyon, Margaux

2016-01-01

Variability in mesoscale nearshore oceanographic conditions plays an important role in the distribution of primary production and food availability for intertidal consumers. Advection of nutrient rich waters by upwelling usually allows the proliferation of diatoms, later replaced by dinoflagellates. We examined upwelling effects on the fatty acid (FA) signature of a benthic intertidal filter feeder to identify its response to pulsed variability in food availability. The study took place in two contrasting seasons and at two upwelling and two non-upwelling sites interspersed within the southern Benguela upwelling system of South Africa. We investigated the FA composition of the adductor muscles and gonads of the mussel Mytilus galloprovincialis to assess how FA are apportioned to the different tissues and whether this changes between upwelling and non-upwelling conditions. In situ temperature loggers used to identify upwelling conditions at the four sites indicated that such events occurred only at the upwelling centres and only in summer. Tissues differed strongly, with gonads presenting a higher proportion of essential FAs. This could reflect the faster turnover rate of gonad tissue or preferential retention of specific FA for reproductive purposes. FA composition did not vary as a direct function of upwelling, but there were strong dissimilarities among sites. Upwelling influenced mussel diets at one upwelling site while at the other, the expected signature of upwelling was displaced downstream of the core of upwelling. Condition Index (CI) and Gonad Index (GI) differed among sites and were not influenced by upwelling, with GI being comparable among sites. In addition, FA proportions were consistent among sites, indicating similar food quality and quantity over time and under upwelling and non-upwelling conditions. This suggests that the influence of upwelling on the west coast of South Africa is pervasive and diffuse, rather than discrete; while nearshore retention or advection of upwelled water is critical and site-specific so that the effects of upwelling differ even among sites categorised as upwelling centres. PMID:27570968

Sustained deposition of contaminants from the Deepwater Horizon spill.

PubMed

Yan, Beizhan; Passow, Uta; Chanton, Jeffrey P; Nöthig, Eva-Maria; Asper, Vernon; Sweet, Julia; Pitiranggon, Masha; Diercks, Arne; Pak, Dorothy

2016-06-14

The 2010 Deepwater Horizon oil spill resulted in 1.6-2.6 × 10(10) grams of petrocarbon accumulation on the seafloor. Data from a deep sediment trap, deployed 7.4 km SW of the well between August 2010 and October 2011, disclose that the sinking of spill-associated substances, mediated by marine particles, especially phytoplankton, continued at least 5 mo following the capping of the well. In August/September 2010, an exceptionally large diatom bloom sedimentation event coincided with elevated sinking rates of oil-derived hydrocarbons, black carbon, and two key components of drilling mud, barium and olefins. Barium remained in the water column for months and even entered pelagic food webs. Both saturated and polycyclic aromatic hydrocarbon source indicators corroborate a predominant contribution of crude oil to the sinking hydrocarbons. Cosedimentation with diatoms accumulated contaminants that were dispersed in the water column and transported them downward, where they were concentrated into the upper centimeters of the seafloor, potentially leading to sustained impact on benthic ecosystems.

Sustained deposition of contaminants from the Deepwater Horizon spill

PubMed Central

Yan, Beizhan; Passow, Uta; Chanton, Jeffrey P.; Nöthig, Eva-Maria; Asper, Vernon; Sweet, Julia; Pitiranggon, Masha; Diercks, Arne; Pak, Dorothy

2016-01-01

The 2010 Deepwater Horizon oil spill resulted in 1.6–2.6 × 1010 grams of petrocarbon accumulation on the seafloor. Data from a deep sediment trap, deployed 7.4 km SW of the well between August 2010 and October 2011, disclose that the sinking of spill-associated substances, mediated by marine particles, especially phytoplankton, continued at least 5 mo following the capping of the well. In August/September 2010, an exceptionally large diatom bloom sedimentation event coincided with elevated sinking rates of oil-derived hydrocarbons, black carbon, and two key components of drilling mud, barium and olefins. Barium remained in the water column for months and even entered pelagic food webs. Both saturated and polycyclic aromatic hydrocarbon source indicators corroborate a predominant contribution of crude oil to the sinking hydrocarbons. Cosedimentation with diatoms accumulated contaminants that were dispersed in the water column and transported them downward, where they were concentrated into the upper centimeters of the seafloor, potentially leading to sustained impact on benthic ecosystems. PMID:27247393

Chemical defence in mussels: antifouling effect of crude extracts of the periostracum of the blue mussel Mytilus edulis.

PubMed

Bers, A Valeria; D'Souza, Fraddry; Klijnstra, Job W; Willemsen, Peter R; Wahl, Martin

2006-01-01

Shells of the blue mussel Mytilus edulis remain free of fouling organisms as long as they possess an intact periostracum, and a multiple antifouling defence that comprises a ripple-like microtopography and the production of chemical antifouling compounds has been suggested previously. This study investigates the chemical defence strategy of blue mussels for the first time. Six crude extracts of the periostracum of intact shells were made using solvents of increasing polarity. These extracts were tested against common fouling organisms in laboratory based bioassays. Non-polar and moderately polar fractions showed the highest activities: the diethyl ether fraction strongly inhibited attachment of Balanus amphitrite cyprids and the marine bacteria Cobetia marina and Marinobacter hydrocarbonoclasticus. Attachment of the benthic diatom Amphora coffeaeformis was significantly reduced by the dichloromethane extract, whereas both ethyl acetate and diethyl ether fractions slowed diatom growth. These results provide the first evidence of surface bound compounds that may moderate surface colonisation.

The Effects of Environmental Factors on Marine Micro-Phytoplankton Community Composition in the Summertime Western North Atlantic Ocean During WACS II.

NASA Astrophysics Data System (ADS)

Stone, J. T.; Vaillancourt, R. D.

2016-02-01

Micro-phytoplankton community composition was determined along a section in the western North Atlantic Ocean between waters near Bermuda and the New England continental shelf during the Western Atlantic Climate Study II (WACS II) from May 18, 2014 to June 6, 2014. Seawater samples were collected from the underway line (z = 5 meters) of the RV Knorr and preserved in both Lugol's and formalin preservatives. The concentrations of centric diatoms, pennate diatoms, dinoflagellates and dictyophytes were determined using light microscopy of preserved samples settled in Utermöhl chambers. Cell abundance data were compared with the temperature and salinity of the surface seawater to determine statistical relationships between environmental factors and phytoplankton community composition. The micro-phytoplankton concentrations were lowest around the Sargasso Sea. Diatom concentrations varied along the transect from the Sargasso Sea. Dinoflagellates were the only group of micro-phytoplankton in this study to have a clear pattern in their distribution. Dinoflagellates were most numerous in the northern-most waters and were absent in the southern-most point of the study, in the Sargasso Sea. The most abundant species of diatoms observed were in the genera Pseudo-Nitzschia and Leptocylindrus. The most abundant species of dinoflagellate were of the genus Protoperidinium. Many of the samples with the highest species richness were closer to the coast and more northern than the samples with low species richness, however the Simpson's diversity indices varied amongst regions. While many of the samples were diverse, the lowest of which was in the Sargasso Sea, there was no clear pattern of species diversity with respect to the distance from the coast. Dinoflagellates, centric diatoms, pennate diatoms, dictyophytes and diversity indices were significantly weakly correlated with temperature, while dinoflagellates were significantly strongly correlated with salinity.

Summer Epiphytic Diatoms from Terra Nova Bay and Cape Evans (Ross Sea, Antarctica) - A Synthesis and Final Conclusions

PubMed Central

Majewska, Roksana; Convey, Peter; De Stefano, Mario

2016-01-01

Despite recent advances in polar marine biology and related fields, many aspects of the ecological interactions that are crucial for the functioning of Antarctic shallow water habitats remain poorly understood. Although epiphytic diatoms play an essential role in the Antarctic marine food web, basic information regarding their ecology, biodiversity and biogeography is largely unavailable. Here, we synthesise studies on Ross Sea epiphytic diatoms collected during 11 summer Antarctic expeditions between the years 1989/90 and 2011/12, presenting a full list of diatom taxa associated with three macroalgal species (Iridaea cordata, Phyllophora antarctica, and Plocamium cartilagineum) and their epiphytic sessile fauna. Diatom communities found during the three summer months at various depths and sampling stations differed significantly in terms of species composition, growth form structure and abundances. Densities ranged from 21 to >8000 cells mm-2, and were significantly higher on the surface of epiphytic micro-fauna than on any of the macroalgal species examined. Generally, host organisms characterized by higher morphological heterogeneity (sessile microfauna, ramified Plocamium) supported richer diatom communities than those with more uniform surfaces (Iridaea). Differences between epiphytic communities associated with different macroalgae were reflected better in species composition than in growth form structure. The latter changed significantly with season, which was related strongly to the changing ice conditions. A general trend towards an increasing number of erect forms in deeper waters and tube-dwelling diatoms in the shallowest sites (2–5 m) was also observed. This study explores further important and largely previously unknown aspects of relationships and interactions between Antarctic epiphytic diatoms and their micro- and macro-environments. PMID:27078637

Potential forensic biogeographic application of diatom colony consistency analysis employing pyrosequencing profiles of the 18S rDNA V7 region.

PubMed

Zhao, Yuancun; Chen, Xiaogang; Yang, Yiwen; Zhao, Xiaohong; Zhang, Shu; Gao, Zehua; Fang, Ting; Wang, Yufang; Zhang, Ji

2018-05-07

Diatom examination has always been used for the diagnosis of drowning in forensic practice. However, traditional examination of the microscopic features of diatom frustules is time-consuming and requires taxonomic expertise. In this study, we demonstrate a potential DNA-based method of inferring suspected drowning site using pyrosequencing (PSQ) of the V7 region of 18S ribosome DNA (18S rDNA) as a diatom DNA barcode. By employing a sparse representation-based AdvISER-M-PYRO algorithm, the original PSQ signals of diatom DNA mixtures were deciphered to determine the corresponding taxa of the composite diatoms. Additionally, we evaluated the possibility of correlating water samples to collection sites by analyzing the PSQ signal profiles of diatom mixtures contained in the water samples via multidimensional scaling. The results suggest that diatomaceous PSQ profile analysis could be used as a cost-effective method to deduce the geographical origin of an environmental bio-sample.

Extraction of diatoms from (cotton) clothing for forensic comparisons.

PubMed

Uitdehaag, Stefan; Dragutinovic, Aleksandar; Kuiper, Irene

2010-07-15

Diatoms in clothing can be used to determine contact with surface water and contact with a specific water source, which can help link suspects to crime scenes. However, for the study of diatoms it is imperative that they are first extracted from the clothing under investigation. In this study we tested three methods for extracting diatoms from cotton clothing: rinsing with water (RW), rinsing with ethanol (RE) and the dissolution of cotton with nitric and sulphuric acid (DI). The DI method produced the highest average yield and can be used to determine contact with water. The RE method extracted reproducible numbers of diatoms from two different T-shirts and the resulting species compositions were similar to their relevant reference water samples. Therefore, we present rinsing with ethanol as an effective extraction method for the qualitative and quantitative analysis of diatoms in (cotton) clothing. (c) 2010 Elsevier Ireland Ltd. All rights reserved.

Late Maastrichtian foraminiferids and diatoms from the Polish Carpathians (Ropianka Formation, Skole Nappe): a case study from the Chmielnik-Grabówka composite section

NASA Astrophysics Data System (ADS)

Gasiński, M. Adam; Olshtynska, Alexandra; Uchman, Alfred

2013-12-01

Gasiński, M.A., Olshtynska, A. and Uchman, A. 2013. Late Maastrichtian foraminiferids and diatoms from the Polish Carpathians (Ropianka Formation, Skole Nappe): a case study from the Chmielnik-Grabowka composite section. Acta Geologica Polonica, 63(4), 515-525. Warszawa. Well-preserved foraminiferids have been found in the Chmielnik-Grabowka section (Skole Nappe, Polish Carpathians). The Abathomphalus mayaroensis (late Maastrichtian) and Racemiguembelina fructicosa (earlylate Maastrichtian) standard planktonic foraminiferal biozones have been recognized, based on the occurrence of their respective index species. Sediments of the R. fructicosa Zone contain diatoms, which are a rare component of Cretaceous flysch microfossil assemblages in the Carpathians. The diatom frustules and some foraminiferid tests are pyritized, probably after burial in the sediment, below the redox boundary or in the oxygen- deficient microenvironment inside the frustules or tests of microfossils; the presence of trace fossils and bioturbational structures in the same bed indicate an oxygenated sea floor.

Primary and complex stressors in polluted mediterranean rivers: Pesticide effects on biological communities

NASA Astrophysics Data System (ADS)

Ricart, Marta; Guasch, Helena; Barceló, Damià; Brix, Rikke; Conceição, Maria H.; Geiszinger, Anita; José López de Alda, Maria; López-Doval, Julio C.; Muñoz, Isabel; Postigo, Cristina; Romaní, Anna M.; Villagrasa, Marta; Sabater, Sergi

2010-03-01

SummaryWe examined the presence of pesticides in the Llobregat river basin (Barcelona, Spain) and their effects on benthic biological communities (invertebrates and diatoms). The Llobregat river is one of Barcelona's major drinking water resources. It has been highly polluted by industrial, agricultural, and urban wastewaters, and—as a typical Mediterranean river—is regularly subjected to periodic floods and droughts. Water scarcity periods result in reduced water flow and dilution capacity, increasing the potential environmental risk of pollutants. Seven sites were selected, where we analysed the occurrence of 22 pesticides (belonging to the classes of triazines, organophosphates, phenylureas, anilides, chloroacetanilides, acidic herbicides and thiocarbamates) in the water and sediment, and the benthic community structure. Biofilm samples were taken to measure several metrics related to both the algal and bacterial components of fluvial biofilms. Multivariate analyses revealed a potential relationship between triazine-type herbicides and the distribution of the diatom community, although no evidence of disruption in the invertebrate community distribution was found. Biofilm metrics were used as response variables rather than abundances of individual species to identify possible cause-effect relationships between pesticide pollution and biotic responses. Certain effects of organophosphates and phenylureas in both structural and functional aspects of the biofilm community were suggested, but the sensitivity of each metric to particular stressors must be assessed before we can confidently assign causality. Complemented with laboratory experiments, which are needed to confirm causality, this approach could be successfully incorporated into environmental risk assessments to better summarise biotic integrity and improve the ecological management.

Feeding ecology of mesopelagic zooplankton of the subtropical and subarctic North Pacific Ocean determined with fatty acid biomarkers

NASA Astrophysics Data System (ADS)

Wilson, S. E.; Steinberg, D. K.; Chu, F.-L. E.; Bishop, J. K. B.

2010-10-01

Mesopelagic zooplankton may meet their nutritional and metabolic requirements in a number of ways including consumption of sinking particles, carnivory, and vertical migration. How these feeding modes change with depth or location, however, is poorly known. We analyzed fatty acid (FA) profiles to characterize zooplankton diet and large particle (>51 μm) composition in the mesopelagic zone (base of euphotic zone -1000 m) at two contrasting time-series sites in the subarctic (station K2) and subtropical (station ALOHA) Pacific Ocean. Total FA concentration was 15.5 times higher in zooplankton tissue at K2, largely due to FA storage by seasonal vertical migrators such as Neocalanus and Eucalanus. FA biomarkers specific to herbivory implied a higher plant-derived food source at mesotrophic K2 than at oligotrophic ALOHA. Zooplankton FA biomarkers specific to dinoflagellates and diatoms indicated that diatoms, and to a lesser extent, dinoflagellates were important food sources at K2. At ALOHA, dinoflagellate FAs were more prominent. Bacteria-specific FA biomarkers in zooplankton tissue were used as an indicator of particle feeding, and peaks were recorded at depths where known particle feeders were present at ALOHA (e.g., ostracods at 100-300 m). In contrast, depth profiles of bacterial FA were relatively constant with depth at K2. Diatom, dinoflagellate, and bacterial biomarkers were found in similar proportions in both zooplankton and particles with depth at both locations, providing additional evidence that mesopelagic zooplankton consume sinking particles. Carnivory indices were higher and increased significantly with depth at ALOHA, and exhibited distinct peaks at K2, representing an increase in dependence on other zooplankton for food in deep waters. Our results indicate that feeding ecology changes with depth as well as by location. These changes in zooplankton feeding ecology from the surface through the mesopelagic zone, and between contrasting environments, have important consequences for the quality and quantity of organic material available to deeper pelagic and benthic food webs, and for organic matter sequestration.

Incorporating benthic community changes into hydrochemical-based projections of coral reef calcium carbonate production under ocean acidification

NASA Astrophysics Data System (ADS)

Shaw, Emily C.; Hamylton, Sarah M.; Phinn, Stuart R.

2016-06-01

The existence of coral reefs is dependent on the production and maintenance of calcium carbonate (CaCO3) framework that is produced through calcification. The net production of CaCO3 will likely decline in the future, from both declining net calcification rates (decreasing calcification and increasing dissolution) and shifts in benthic community composition from calcifying organisms to non-calcifying organisms. Here, we present a framework for hydrochemical studies that allows both declining net calcification rates and changes in benthic community composition to be incorporated into projections of coral reef CaCO3 production. The framework involves upscaling net calcification rates for each benthic community type using mapped proportional cover of the benthic communities. This upscaling process was applied to the reef flats at One Tree and Lady Elliot reefs (Great Barrier Reef) and Shiraho Reef (Okinawa), and compared to existing data. Future CaCO3 budgets were projected for Lady Elliot Reef, predicting a decline of 53 % from the present value by end-century (800 ppm CO2) without any changes to benthic community composition. A further 5.7 % decline in net CaCO3 production is expected for each 10 % decline in calcifier cover, and net dissolution is predicted by end-century if calcifier cover drops below 18 % of the present extent. These results show the combined negative effect of both declining net calcification rates and changing benthic community composition on reefs and the importance of considering both processes for determining future reef CaCO3 production.

An experiment to assess the effects of diatom dissolution on oxygen isotope ratios.

PubMed

Smith, Andrew C; Leng, Melanie J; Swann, George E A; Barker, Philip A; Mackay, Anson W; Ryves, David B; Sloane, Hilary J; Chenery, Simon R N; Hems, Mike

2016-01-30

Current studies which use the oxygen isotope composition from diatom silica (δ(18) Odiatom ) as a palaeoclimate proxy assume that the δ(18) Odiatom value reflects the isotopic composition of the water in which the diatom formed. However, diatoms dissolve post mortem, preferentially losing less silicified structures in the water column and during/after burial into sediments. The impact of dissolution on δ(18) Odiatom values and potential misinterpretation of the palaeoclimate record are evaluated. Diatom frustules covering a range of ages (6 samples from the Miocene to the Holocene), environments and species were exposed to a weak alkaline solution for 48 days at two temperatures (20 °C and 4 °C), mimicking natural dissolution post mucilage removal. Following treatment, dissolution was assessed using scanning electron microscope images and a qualitative diatom dissolution index. The diatoms were subsequently analysed for their δ(18) O values using step-wise fluorination and isotope ratio mass spectrometry. Variable levels of diatom dissolution were observed between the six samples; in all cases higher temperatures resulted in more frustule degradation. Dissolution was most evident in younger samples, probably as a result of the more porous nature of the silica. The degree of diatom dissolution does not directly equate to changes in the isotope ratios; the δ(18) Odiatom value was, however, lower after dissolution, but in only half the samples was this reduction outside the analytical error (2σ analytical error = 0.46‰). We have shown that dissolution can have a small negative impact on δ(18) Odiatom values, causing reductions of up to 0.59‰ beyond analytical error (0.46‰) at natural environmental temperatures. These findings need to be considered in palaeoenvironmental reconstructions using δ(18) Odiatom values, especially when interpreting variations in these values of <1‰. Copyright © 2015 John Wiley & Sons, Ltd.

Reconstructing Late Holocene Climate Variability in North East China From Varved Maar Lake Sediments

NASA Astrophysics Data System (ADS)

Panizzo, V. N.; Mackay, A. W.; Rioual, P.; Chu, G.; Leng, M. J.

2008-12-01

Reconstructing climatic variability over the past c. 2 ka years is recognised as a key PAGES timeframe (focus 2). However few high-resolution records exist from the climate sensitive region of N) China which receives the majority of its precipitation from the east Asian summer monsoon (EASM). Interactions between the EASM and the global climate system have great resonance. Such examples include how the EASM responded to changes in climate over the documented e.g. "Medieval Warm Period" (c. AD 900 - 1300), "Little Ice Age" (c. AD 1350-1850) and recent warming. At present, literature remains contradictory to such environmental changes in NE China over this time-frame due to poor chronological control, low resolution of existing studies and even due to the inexact terminology of these climatic periods. Xiaolongwan Lake (XLW) is a small, closed, maar lake located in the Long Gang Volcanic Field, NE China (42°18'N; 126°19'E). It is at an elevation of 655 m a.s.l. with a maximum depth of 15 m. A varve chronology has been created for a 143 cm composite core (2 cores collected in 2006), and here we present diatoms and organic geochemistry (δ13C, TOC, C/N) evidence for environmental change over the past c. 2 ka years. Results show a gradual change in diatom species, moving from a composition where opportunistic species (e.g. Achnanthidium minutissimum) dominate (between c. 100 BC to 500 years AD) at the beginning of the record to one comprised of benthic/epiphytic species (e.g. Staurosira construens var venter, Punctastriata discoidea, Gomphonema parvulum). The introduction after c. 1850 years AD of the planktonic diatom species, Discotella woltereckii, not previously seen in the record, coincides with recent warming. This may be a response to changing limnological conditions, such as decreasing duration of lake ice-cover. Bulk organic δ13C results conducted on a short core collected from XLW in summer 2007, show that over the past c. 350 years there is a distinct decreasing trend in lake macrophytes. At the same time, trends in decreasing mean annual precipitation and an increasing trend in mean annual temperatures for the region are documented from meteorological records. It is possible that reduced EASM intensity may be affecting the limnology and therefore biology of XLW as seen in more recent years. Quantitative techniques (siZer) will later provide a method of assessing periodicities of EASM from this high-resolution record in order to compare with other independent palaeorecords.

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil.

PubMed

Bissoli, Lorena B; Bernardino, Angelo F

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil.

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil

PubMed Central

Bissoli, Lorena B.

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil. PMID:29507833

Nitrogen Fixed By Cyanobacteria Is Utilized By Deposit-Feeders

PubMed Central

Karlson, Agnes M. L.; Gorokhova, Elena; Elmgren, Ragnar

2014-01-01

Benthic communities below the photic zone depend for food on allochthonous organic matter derived from seasonal phytoplankton blooms. In the Baltic Sea, the spring diatom bloom is considered the most important input of organic matter, whereas the contribution of the summer bloom dominated by diazotrophic cyanobacteria is less understood. The possible increase in cyanobacteria blooms as a consequence of eutrophication and climate change calls for evaluation of cyanobacteria effects on benthic community functioning and productivity. Here, we examine utilization of cyanobacterial nitrogen by deposit-feeding benthic macrofauna following a cyanobacteria bloom at three stations during two consecutive years and link these changes to isotopic niche and variations in body condition (assayed as C:N ratio) of the animals. Since nitrogen-fixing cyanobacteria have δ15N close to -2‰, we expected the δ15N in the deposit-feeders to decrease after the bloom if their assimilation of cyanobacteria-derived nitrogen was substantial. We also expected the settled cyanobacteria with their associated microheterotrophic community and relatively high nitrogen content to increase the isotopic niche area, trophic diversity and dietary divergence between individuals (estimated as the nearest neighbour distance) in the benthic fauna after the bloom. The three surface-feeding species (Monoporeia affinis, Macoma balthica and Marenzelleria arctia) showed significantly lower δ15N values after the bloom, while the sub-surface feeder Pontoporeia femorata did not. The effect of the bloom on isotopic niche varied greatly between stations; populations which increased niche area after the bloom had better body condition than populations with reduced niche, regardless of species. Thus, cyanobacterial nitrogen is efficiently integrated into the benthic food webs in the Baltic, with likely consequences for their functioning, secondary production, transfer efficiency, trophic interactions, and intra- and interspecific competition. PMID:25105967

Nitrogen fixed by cyanobacteria is utilized by deposit-feeders.

PubMed

Karlson, Agnes M L; Gorokhova, Elena; Elmgren, Ragnar

2014-01-01

Benthic communities below the photic zone depend for food on allochthonous organic matter derived from seasonal phytoplankton blooms. In the Baltic Sea, the spring diatom bloom is considered the most important input of organic matter, whereas the contribution of the summer bloom dominated by diazotrophic cyanobacteria is less understood. The possible increase in cyanobacteria blooms as a consequence of eutrophication and climate change calls for evaluation of cyanobacteria effects on benthic community functioning and productivity. Here, we examine utilization of cyanobacterial nitrogen by deposit-feeding benthic macrofauna following a cyanobacteria bloom at three stations during two consecutive years and link these changes to isotopic niche and variations in body condition (assayed as C:N ratio) of the animals. Since nitrogen-fixing cyanobacteria have δ(15)N close to -2‰, we expected the δ(15)N in the deposit-feeders to decrease after the bloom if their assimilation of cyanobacteria-derived nitrogen was substantial. We also expected the settled cyanobacteria with their associated microheterotrophic community and relatively high nitrogen content to increase the isotopic niche area, trophic diversity and dietary divergence between individuals (estimated as the nearest neighbour distance) in the benthic fauna after the bloom. The three surface-feeding species (Monoporeia affinis, Macoma balthica and Marenzelleria arctia) showed significantly lower δ(15)N values after the bloom, while the sub-surface feeder Pontoporeia femorata did not. The effect of the bloom on isotopic niche varied greatly between stations; populations which increased niche area after the bloom had better body condition than populations with reduced niche, regardless of species. Thus, cyanobacterial nitrogen is efficiently integrated into the benthic food webs in the Baltic, with likely consequences for their functioning, secondary production, transfer efficiency, trophic interactions, and intra- and interspecific competition.

Effects of Ice-Algal Aggregate Export on the Connectivity of Bacterial Communities in the Central Arctic Ocean

PubMed Central

Rapp, Josephine Z.; Fernández-Méndez, Mar; Bienhold, Christina; Boetius, Antje

2018-01-01

In summer 2012, Arctic sea ice declined to a record minimum and, as a consequence of the melting, large amounts of aggregated ice-algae sank to the seafloor at more than 4,000 m depth. In this study, we assessed the composition, turnover and connectivity of bacterial and microbial eukaryotic communities across Arctic habitats from sea ice, algal aggregates and surface waters to the seafloor. Eukaryotic communities were dominated by diatoms, dinoflagellates and other alveolates in all samples, and showed highest richness and diversity in sea-ice habitats (∼400–500 OTUs). Flavobacteriia and Gammaproteobacteria were the predominant bacterial classes across all investigated Arctic habitats. Bacterial community richness and diversity peaked in deep-sea samples (∼1,700 OTUs). Algal aggregate-associated bacterial communities were mainly recruited from the sea-ice community, and were transported to the seafloor with the sinking ice algae. The algal deposits at the seafloor had a unique community structure, with some shared sequences with both the original sea-ice community (22% OTU overlap), as well as with the deep-sea sediment community (17% OTU overlap). We conclude that ice-algal aggregate export does not only affect carbon export from the surface to the seafloor, but may change microbial community composition in central Arctic habitats with potential effects for benthic ecosystem functioning in the future. PMID:29875749

Aquatic biology in Nederlo Creek, southwestern Wisconsin

USGS Publications Warehouse

Kammerer, Phil A.; Lidwin, R.A.; Mason, J.W.; Narf, R.P.

1982-01-01

The aquatic community is diverse and reasonably stable with little indication of environmental disturbance. Aquatic macrophyte population (dominated by Ranunculus aquatilis L., Veronica catenata Penn., and Nasturtium offlcinale) varies little from spring to fall. Periphytic and planktonic algae are predominantly diatoms, with the genus Achnanthes dominating both communities. Most genera of planktonic algae originate in the periphyton, but some true planktonic algae were identified. The benthic invertebrate population is dominated by Trichoptera and is a major food source for trout and forage fish. Biotic index values calculated from benthic invertebrate data indicate that water quality is very good to excellent. The trout population is low and represents only a small part of the total fish population both in biomass and numbers. Brown trout are usually stocked annually in the spring to enhance sport fishing, but by fall most trout are wild. The major environmental factors limiting trout population seem to be insufficient cover, insufficient pool depth and volume, and small spawning areas. The wild trout population is highly dependent on spawning success the previous fall.

Assessing Ecological Health of Large Tropical Rivers in Developing Regions: a Case Study from the Mekong.

NASA Astrophysics Data System (ADS)

Campbell, I. C.; Resh, V. H.; Chessman, B.

2005-05-01

Bioassessment tools are being developed to assess the Ecological health of the Lower Mekong River. A multinational team of local specialists has been established working with two international mentors. This approach allows geographical homogeneity of methods, assurance of quality and capacity building. A range of potential indicators were tested in the first year of the program, with benthic and littoral invertebrates, zooplankton and benthic diatoms finally being selected for further development. The first two year's assessments indicate that the health of the Mekong is generally good, with the exception of the Mekong delta, where population density is high and agriculture is most intensive. There is little industry in the Mekong Basin, and as yet no large dams have been constructed. Surveys will be conducted on a three to five year cycle, with different regions in the basin being targeted each year. Development of appropriate metrics to quantify river health is now a priority.

A Latest Glacial and Holocene Record From Medicine Lake, Siskiyou County, California: Preliminary Diatom, Pollen, and Sediment Data

NASA Astrophysics Data System (ADS)

Starratt, S. W.; Barron, J. A.; Kneeshaw, T.; Phillips, L.; Lowenstern, J.; Wanket, J. A.

2002-12-01

Medicine Lake is a small (165 ha), relatively shallow (average 7.3 m), medium- altitude (2,036 m) lake located within the summit caldera of Medicine Lake volcano, a dormant Quaternary shield volcano located in the southern Cascade Range. During September 1999 and 2000, high-resolution bathymetry, seismic-reflection profiles, and sediment cores were collected from the lake. Twenty six samples from core B100NC-1 (water depth 12.6 m; length 226 cm) were analyzed for physical properties, sediment grain size, diatoms, pollen, and total organic carbon (TOC). Using both 14C (AMS) dating and tephrochronology, the sediments at the bottom of the core are estimated to be 11,000 cal yr B.P., thus yielding an estimated average sedimentation rate of about 21 cm/1,000 yr. The lowermost part of the core (226 cm - ~200 cm) records the transition from glacial to interglacial conditions. During the period from about 11,000-7,200 cal yr B.P., lake level fluctuated between deeper oligotrophic conditions with a diatom flora dominated by Cyclotella spp. and shallower intervals with a diverse benthic flora. The relative low abundance (10-15%) of Abies (fir) pollen and relative high abundance (30-40%) of Artemesia (sagebrush) pollen in this interval suggest drier than present-day conditions. The lowest part of this interval (226 cm - 210 cm) is almost devoid of Cyclotella and may represent an ice-covered lake in which only a small benthic flora could exist around the margins of the lake where light penetration was the greatest. The sediments in this interval are relatively low in TOC and are dominated by glacial flour. From about 7,200 cal yr B.P. to the present, conditions have fluctuated between higher lake levels (three intervals) that are dominated by Cyclotella with a reduced number and diversity of benthic taxa, and lower lake levels (two intervals) during which the abundances of Cyclotella decrease to less than 10%. Relative values of Abies and Pinus (pine) pollen are higher during high lake levels, whereas pollen of aquatic taxa (primarily Isoetes [quillwort]) increases in significance at lower lake levels. Total organic carbon is higher during high stands and lower during low stands. Comparison with recently published multi-proxy studies of the Lake Tahoe-Truckee River-Pyramid Lake drainage system suggest that some of the changes in lake level observed at Medicine Lake between about 7,500-4,500 cal yr B.P. may be regional in nature, while fluctuations over the last 4,500 yr probably reflect conditions affecting only the local watershed.

Lake warming favours small-sized planktonic diatom species

PubMed Central

Winder, Monika; Reuter, John E.; Schladow, S. Geoffrey

2008-01-01

Diatoms contribute to a substantial portion of primary production in the oceans and many lakes. Owing to their relatively heavy cell walls and high nutrient requirements, planktonic diatoms are expected to decrease with climate warming because of reduced nutrient redistribution and increasing sinking velocities. Using a historical dataset, this study shows that diatoms were able to maintain their biovolume with increasing stratification in Lake Tahoe over the last decades; however, the diatom community structure changed. Increased stratification and reduced nitrogen to phosphorus ratios selected for small-celled diatoms, particularly within the Cyclotella genus. An empirical model showed that a shift in phytoplankton species composition and cell size was consistent within different depth strata, indicating that altered nutrient concentrations were not responsible for the change. The increase in small-celled species was sufficient to decrease the average diatom size and thus sinking velocity, which strongly influences energy transfer through the food web and carbon cycling. Our results show that within the diverse group of diatoms, small-sized species with a high surface area to volume ratio were able to adapt to a decrease in mixing intensity, supporting the hypotheses that abiotic drivers affect the size structure of planktonic communities and that warmer climate favours small-sized diatom cells. PMID:18812287

Fossil diatom assemblages as paleoecological indicators of paleo-water environmental change in the Ulleung Basin, East Sea, Republic of Korea

NASA Astrophysics Data System (ADS)

Yun, Suk Min; Lee, Taehee; Jung, Seung Won; Park, Joon Sang; Lee, Jin Hwan

2017-09-01

The fossil diatom assemblage record from two sediment cores obtained from the Ulleung Basin, East Sea, Republic of Korea, revealed changes in the diatom assemblage zones in PG1 and PD3 core samples. The two sediment cores were δC14 dated and approximately represented the late Pleistocene-Holocene. The analysis of age zones in the PG1 core and PD3 core was assessed based on the frequency of variations, and occurrences of biostratigraphical fossil diatom species. During the Last Glacial Maximum (LGM), the sea level was lower than that at present and the Ulleung Basin became isolated from the Pacific Ocean. As a result, there would have been a limited Tsushima Warm Current (TWC) influence, and salinity would have decreased resulting in increased freshwater and coastal diatoms. The distribution pattern of diatoms presented in the cores was associated with changes in water temperature and salinity and the adding of terrigenous material brought about by the input of freshwater. Changes in the abundance of a tychopelagic diatom, Paralia sulcata, reflected the effect of the water currents. Diatom temperature (Td) values and the ratio of centric/pennate diatoms provided evidence of limited influences of the TWC and freshwater inflow. It is thought that all assemblage zones were influenced by the TWC, which had an important effect on the distribution and composition of fossil diatoms.

Total lipid and fatty acid composition of eight strains of marine diatoms

NASA Astrophysics Data System (ADS)

Liang, Ying; Mai, Kang-Sen; Sun, Shi-Chun

2000-12-01

Fatty acid composition and total lipid content of 8 strains of marine diatoms ( Nitzschia frustrula, Nitzschia closterium, Nitzschia incerta, Navicula pelliculosa, Phaeodactylum tricornutum, Synedra fragilaroides) were examined. The microalgae were grown under defined conditions and harvested at the late exponential phase. The major fatty acids in most strains were 14∶0 (1.0% 6.3%), 16∶0 (13.5 26.4%), 16∶1n-7 (21.1% 46.3%) and 20∶5n-3 (6.5% 19.5%). The polyunsaturated fatty acids 16∶2n-4, 16∶3n-4, 16∶4n-1 and 20∶4n-6 also comprised a significant proportion of the total fatty acids in some strains. The characteristic fatty acid composition of diatoms is readily distinguishable from those of other microalgal groups. Significant concentration of the polyunsaturated fatty acid 20∶5n-3 (eicosapentaenoic acid) was present in each strain, with the highest proportion in B222 (19.5%).

The role of life cycle processes on phytoplankton spring bloom composition: a modelling study applied to the Gulf of Finland

NASA Astrophysics Data System (ADS)

Lee, Soonmi; Hofmeister, Richard; Hense, Inga

2018-02-01

Diatoms are typical representatives of the spring bloom worldwide. In several parts of the Baltic Sea, however, cold-water dinoflagellates such as Biecheleria baltica have become dominant during the past decades. We have investigated the mechanisms behind this trend by using an ecosystem model which includes the life cycles of three main phytoplankton groups (diatoms, dinoflagellates and cyanobacteria). Coupled to a water column model we have applied the model system for the period 1981-2010 to the Gulf of Finland. In agreement with observations, the model results show an increasing trend in the proportion of dinoflagellates in the Gulf of Finland. Temperature and life cycle-related processes explain the relative increase of dinoflagellates and corresponding decrease of diatoms. Warming over the 30 years has enabled a head start of dinoflagellates by reducing the time lag between germination and growth of vegetative cells. Although diatoms have a much higher growth rate, they cannot compete with the high dinoflagellate concentrations that result from the inoculum. Diatoms will only dominate in years when the inoculum concentrations of dinoflagellates or the temperatures are low. Overall, the model results suggest that consideration of life cycle dynamics of competing phytoplankton groups may be crucial to understand trends and shifts in community composition.

Genome-scale model reveals metabolic basis of biomass partitioning in a model diatom

DOE PAGES

Levering, Jennifer; Broddrick, Jared; Dupont, Christopher L.; ...

2016-05-06

Diatoms are eukaryotic microalgae that contain genes from various sources, including bacteria and the secondary endosymbiotic host. Due to this unique combination of genes, diatoms are taxonomically and functionally distinct from other algae and vascular plants and confer novel metabolic capabilities. Based on the genome annotation, we performed a genome-scale metabolic network reconstruction for the marine diatom Phaeodactylum tricornutum. Due to their endosymbiotic origin, diatoms possess a complex chloroplast structure which complicates the prediction of subcellular protein localization. Based on previous work we implemented a pipeline that exploits a series of bioinformatics tools to predict protein localization. The manually curatedmore » reconstructed metabolic network iLB1027_lipid accounts for 1,027 genes associated with 4,456 reactions and 2,172 metabolites distributed across six compartments. To constrain the genome-scale model, we determined the organism specific biomass composition in terms of lipids, carbohydrates, and proteins using Fourier transform infrared spectrometry. Our simulations indicate the presence of a yet unknown glutamine-ornithine shunt that could be used to transfer reducing equivalents generated by photosynthesis to the mitochondria. Furthermore, the model reflects the known biochemical composition of P. tricornutum in defined culture conditions and enables metabolic engineering strategies to improve the use of P. tricornutum for biotechnological applications.« less

LATITUDINAL GRADIENTS IN BENTHIC COMMUNITY COMPOSITION IN WESTERN ATLANTIC ESTUARIES

EPA Science Inventory

The community structure of benthic macroinvertebrates from estuaries along the Atlantic coast of North America from Cape Cod, MA, to Biscayne Bay, FL, were compared. Benthic data were collected over a 5 year period (1990 to 1995) by the U.S. Environmental Protection Agency's Envi...

Benthic-Pelagic Coupling: Effects on Nematode Communities along Southern European Continental Margins

PubMed Central

Pape, Ellen; Jones, Daniel O. B.; Manini, Elena; Bezerra, Tania Nara; Vanreusel, Ann

2013-01-01

Along a west-to-east axis spanning the Galicia Bank region (Iberian margin) and the Mediterranean basin, a reduction in surface primary productivity and in seafloor flux of particulate organic carbon was mirrored in the in situ organic matter quantity and quality within the underlying deep-sea sediments at different water depths (1200, 1900 and 3000 m). Nematode standing stock (abundance and biomass) and genus and trophic composition were investigated to evaluate downward benthic-pelagic coupling. The longitudinal decline in seafloor particulate organic carbon flux was reflected by a reduction in benthic phytopigment concentrations and nematode standing stock. An exception was the station sampled at the Galicia Bank seamount, where despite the maximal particulate organic carbon flux estimate, we observed reduced pigment levels and nematode standing stock. The strong hydrodynamic forcing at this station was believed to be the main cause of the local decoupling between pelagic and benthic processes. Besides a longitudinal cline in nematode standing stock, we noticed a west-to-east gradient in nematode genus and feeding type composition (owing to an increasing importance of predatory/scavenging nematodes with longitude) governed by potential proxies for food availability (percentage of nitrogen, organic carbon, and total organic matter). Within-station variability in generic composition was elevated in sediments with lower phytopigment concentrations. Standing stock appeared to be regulated by sedimentation rates and benthic environmental variables, whereas genus composition covaried only with benthic environmental variables. The coupling between deep-sea nematode assemblages and surface water processes evidenced in the present study suggests that it is likely that climate change will affect the composition and function of deep-sea nematodes. PMID:23565176

Estuarine sediment toxicity tests on diatoms: Sensitivity comparison for three species

NASA Astrophysics Data System (ADS)

Moreno-Garrido, Ignacio; Lubián, Luis M.; Jiménez, Begoña; Soares, Amadeu M. V. M.; Blasco, Julián

2007-01-01

Experimental populations of three marine and estuarine diatoms were exposed to sediments with different levels of pollutants, collected from the Aveiro Lagoon (NW of Portugal). The species selected were Cylindrotheca closterium, Phaeodactylum tricornutum and Navicula sp. Previous experiments were designed to determine the influence of the sediment particle size distribution on growth of the species assayed. Percentage of silt-sized sediment affect to growth of the selected species in the experimental conditions: the higher percentage of silt-sized sediment, the lower growth. In any case, percentages of silt-sized sediment less than 10% did not affect growth. In general, C. closterium seems to be slightly more sensitive to the selected sediments than the other two species. Two groups of sediment samples were determined as a function of the general response of the exposed microalgal populations: three of the six samples used were more toxic than the other three. Chemical analysis of the samples was carried out in order to determine the specific cause of differences in toxicity. After a statistical analysis, concentrations of Sn, Zn, Hg, Cu and Cr (among all physico-chemical analyzed parameters), in order of importance, were the most important factors that divided the two groups of samples (more and less toxic samples). Benthic diatoms seem to be sensitive organisms in sediment toxicity tests. Toxicity data from bioassays involving microphytobentos should be taken into account when environmental risks are calculated.

Molecular Response to Toxic Diatom-Derived Aldehydes in the Sea Urchin Paracentrotus lividus

PubMed Central

Varrella, Stefano; Romano, Giovanna; Ianora, Adrianna; Bentley, Matt G.; Ruocco, Nadia; Costantini, Maria

2014-01-01

Diatoms are dominant photosynthetic organisms in the world’s oceans and represent a major food source for zooplankton and benthic filter-feeders. However, their beneficial role in sustaining marine food webs has been challenged after the discovery that they produce secondary metabolites, such as polyunsaturated aldehydes (PUAs), which negatively affect the reproductive success of many invertebrates. Here, we report the effects of two common diatom PUAs, heptadienal and octadienal, which have never been tested before at the molecular level, using the sea urchin, Paracentrotus lividus, as a model organism. We show that both PUAs are able to induce teratogenesis (i.e., malformations), as already reported for decadienal, the better-studied PUA of this group. Moreover, post-recovery experiments show that embryos can recover after treatment with all three PUAs, indicating that negative effects depend both on PUA concentrations and the exposure time of the embryos to these metabolites. We also identify the time range during which PUAs exert the greatest effect on sea urchin embryogenesis. Finally, we report the expression levels of thirty one genes (having a key role in a broad range of functional responses, such as stress, development, differentiation, skeletogenesis and detoxification processes) in order to identify the common targets affected by PUAs and their correlation with morphological abnormalities. This study opens new perspectives for understanding how marine organisms afford protection from environmental toxicants through an integrated network of genes. PMID:24714125

Biological responses of the marine diatom Chaetoceros socialis to changing environmental conditions: A laboratory experiment

PubMed Central

Roevros, Nathalie; Dehairs, Frank; Chou, Lei

2017-01-01

Diatoms constitute a major group of phytoplankton, accounting for ~20% of the world’s primary production. It has been shown that iron (Fe) can be the limiting factor for phytoplankton growth, in particular, in the HNLC (High Nutrient Low Chlorophyll) regions. Iron plays thus an essential role in governing the marine primary productivity and the efficiency of biological carbon pump. Oceanic systems are undergoing continuous modifications at varying rates and magnitudes as a result of changing climate. The objective of our research is to evaluate how changing environmental conditions (dust deposition, ocean warming and acidification) can affect marine Fe biogeochemistry and diatom growth. Laboratory culture experiments using a marine diatom Chaetoceros socialis were conducted at two temperatures (13°C and 18°C) and under two pCO2 (carbon dioxide partial pressure) (400 μatm and 800 μatm) conditions. The present study clearly highlights the effect of ocean acidification on enhancing the release of Fe upon dust deposition. Our results also confirm that being a potential source of Fe, dust provides in addition a readily utilizable source of macronutrients such as dissolved phosphate (PO4) and silicate (DSi). However, elevated atmospheric CO2 concentrations may also have an adverse impact on diatom growth, causing a decrease in cell size and possible further changes in phytoplankton composition. Meanwhile, ocean warming may lead to the reduction of diatom production and cell size, inducing poleward shifts in the biogeographic distribution of diatoms. The changing climate has thus a significant implication for ocean phytoplankton growth, cell size and primary productivity, phytoplankton distribution and community composition, and carbon (C), nitrogen (N), phosphorus (P), silicon (Si) and Fe biogeochemical cycles in various ways. PMID:29190826

CHANGES IN THE FRESHWATER BENTHIC COMMUNITY OF LAKE ONTARIO SINCE THE INVASION OF DREISSENA 1972-1997

EPA Science Inventory

Population changes of three major benthic taxa are discussed in relation to Dreissena spp. Lake Ontario was sampled pre-invasion (1972) and post-invasion (1994, 1997) for abundance of benthic organisms. In offshore sediments of Lake Ontario, neither species composition nor abunda...

A multicompartment approach--diatoms, macrophytes, benthic macroinvertebrates and fish--to assess the impact of toxic industrial releases on a small French river.

PubMed

Lainé, Manon; Morin, Soizic; Tison-Rosebery, Juliette

2014-01-01

The River Luzou flows through a sandy substrate in the South West of France. According to the results of two assessment surveys, the Water Agency appraised that this river may not achieve the good ecological status by 2015 as required by the Water Framework Directive (2000/60/EC). This ecosystem is impacted by industrial effluents (organic matter, metals and aromatic compounds). In order to assess and characterize the impact, this study aimed to combine a set of taxonomic and non-taxonomic metrics for diatoms, macrophytes, macroinvertebrates and fish along the up- to downstream gradient of the river. Diversity metrics, biological indices, biological and ecological traits were determined for the four biological quality elements (BQE). Various quantitative metrics (biomass estimates) were also calculated for diatom communities. The results were compared to physicochemical analysis. Biological measurements were more informative than physicochemical analysis, in the context of the study. Biological responses indicated both the contamination of water and its intensity. Diversity metrics and biological indices strongly decreased with pollution for all BQE but diatoms. Convergent trait selection with pollution was observed among BQE: reproduction, colonization strategies, or trophic regime were clearly modified at impaired sites. Taxon size and relation to the substrate diverged among biological compartments. Multiple anthropogenic pollution calls for alternate assessment methods of rivers' health. Our study exemplifies the fact that, in the case of complex contaminations, biological indicators can be more informative for environmental risk, than a wide screening of contaminants by chemical analysis alone. The combination of diverse biological compartments provided a refined diagnostic about the nature (general mode of action) and intensity of the contamination.

A Multicompartment Approach - Diatoms, Macrophytes, Benthic Macroinvertebrates and Fish - To Assess the Impact of Toxic Industrial Releases on a Small French River

PubMed Central

Lainé, Manon; Morin, Soizic; Tison-Rosebery, Juliette

2014-01-01

The River Luzou flows through a sandy substrate in the South West of France. According to the results of two assessment surveys, the Water Agency appraised that this river may not achieve the good ecological status by 2015 as required by the Water Framework Directive (2000/60/EC). This ecosystem is impacted by industrial effluents (organic matter, metals and aromatic compounds). In order to assess and characterize the impact, this study aimed to combine a set of taxonomic and non-taxonomic metrics for diatoms, macrophytes, macroinvertebrates and fish along the up- to downstream gradient of the river. Diversity metrics, biological indices, biological and ecological traits were determined for the four biological quality elements (BQE). Various quantitative metrics (biomass estimates) were also calculated for diatom communities. The results were compared to physicochemical analysis. Biological measurements were more informative than physicochemical analysis, in the context of the study. Biological responses indicated both the contamination of water and its intensity. Diversity metrics and biological indices strongly decreased with pollution for all BQE but diatoms. Convergent trait selection with pollution was observed among BQE: reproduction, colonization strategies, or trophic regime were clearly modified at impaired sites. Taxon size and relation to the substrate diverged among biological compartments. Multiple anthropogenic pollution calls for alternate assessment methods of rivers' health. Our study exemplifies the fact that, in the case of complex contaminations, biological indicators can be more informative for environmental risk, than a wide screening of contaminants by chemical analysis alone. The combination of diverse biological compartments provided a refined diagnostic about the nature (general mode of action) and intensity of the contamination. PMID:25019954

The influence of environmental variability on the biogeography of coccolithophores and diatoms in the Great Calcite Belt

NASA Astrophysics Data System (ADS)

Smith, Helen E. K.; Poulton, Alex J.; Garley, Rebecca; Hopkins, Jason; Lubelczyk, Laura C.; Drapeau, Dave T.; Rauschenberg, Sara; Twining, Ben S.; Bates, Nicholas R.; Balch, William M.

2017-11-01

The Great Calcite Belt (GCB) of the Southern Ocean is a region of elevated summertime upper ocean calcite concentration derived from coccolithophores, despite the region being known for its diatom predominance. The overlap of two major phytoplankton groups, coccolithophores and diatoms, in the dynamic frontal systems characteristic of this region provides an ideal setting to study environmental influences on the distribution of different species within these taxonomic groups. Samples for phytoplankton enumeration were collected from the upper mixed layer (30 m) during two cruises, the first to the South Atlantic sector (January-February 2011; 60° W-15° E and 36-60° S) and the second in the South Indian sector (February-March 2012; 40-120° E and 36-60° S). The species composition of coccolithophores and diatoms was examined using scanning electron microscopy at 27 stations across the Subtropical, Polar, and Subantarctic fronts. The influence of environmental parameters, such as sea surface temperature (SST), salinity, carbonate chemistry (pH, partial pressure of CO2 (pCO2), alkalinity, dissolved inorganic carbon), macronutrients (nitrate + nitrite, phosphate, silicic acid, ammonia), and mixed layer average irradiance, on species composition across the GCB was assessed statistically. Nanophytoplankton (cells 2-20 µm) were the numerically abundant size group of biomineralizing phytoplankton across the GCB, with the coccolithophore Emiliania huxleyi and diatoms Fragilariopsis nana, F. pseudonana, and Pseudo-nitzschia spp. as the most numerically dominant and widely distributed. A combination of SST, macronutrient concentrations, and pCO2 provided the best statistical descriptors of the biogeographic variability in biomineralizing species composition between stations. Emiliania huxleyi occurred in silicic acid-depleted waters between the Subantarctic Front and the Polar Front, a favorable environment for this species after spring diatom blooms remove silicic acid. Multivariate statistics identified a combination of carbonate chemistry and macronutrients, covarying with temperature, as the dominant drivers of biomineralizing nanoplankton in the GCB sector of the Southern Ocean.

Biological studies of atmospheric deposition impact on biota in Kola North Mountain Lakes, Russia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yakovlev, V.; Sharov, A.; Vandysh, O.

1996-12-31

In the framework of the AL:PE projects, biological studies of phyto-, zooplankton and zoobenthos communities of a small lakes situated in Chuna tundra and Chibiny mountains in Murmansk region were performed in 1993-1995. The lakes are the typical oligotrophic mountain lakes. In the Chibiny lake phytoplankton were presented mostly by species from rock catchment area. Summer phytoplankton state in the lakes showed no acidification in 1993-1995. However, the great number dead cells of acid tolerance diatoms, such as Tabellaria flocculosa found in the Chuna lake in summer period, may indicate a presence of acid episodes. Zooplankton of the lakes ismore » typical for high oligotrophic mountain lakes. However, lack of the acid sensitive daphniidae cladocerans seems to be a result of acidification effects. There were no significant relationships between benthic invertebrates species composition and present water acidity of the lakes. The typical for mountain lakes taxa (Prodiamesinae chironomids, stone flies and mayflies) were found in lake shore and streams. Despite the only little evidence of damage in biota, the further biological studies would be useful for long-term monitoring of the mountain lakes.« less

Shading decreases the abundance of the herbivorous California horn snail, Cerithidea californica

USGS Publications Warehouse

Lorda, Julio; Lafferty, Kevin D.

2012-01-01

Most of the intertidal zone in estuaries of California, USA and Baja California, Mexico is covered with vascular vegetation. Shading by these vascular plants influences abiotic and biotic processes that shape benthic community assemblages. We present data on the effects of shading on the California horn snail, Cerithidea californica. This species is important because it is the most common benthic macrofaunal species in these systems and acts as an obligate intermediate host of several species of rematode parasites that infect several other species. Using observational and experimental studies, we found a negative effect of shade on the distribution and abundance of the California horn snail. We hypothesized that shading reduces the abundance of the epipelic diatoms that the snails feeds on, causing snails to leave haded areas. We observed a negative relationship between vascular plant cover, sub-canopy light levels, and snail density in Mugu Lagoon. Then we experimentally manipulated light regimes, by clipping vegetation and adding shade structures, and found higher snail densities at higher light levels. In Goleta Slough, we isolated the effect of shade from vegetation by documenting a negative relationship between the shade created by two bridges and diatom and snail densities. We also found that snails moved the greatest distances over shaded channel banks compared to unshaded channel banks. Further, we documented the effect of water depth and channel bank orientation on shading in this system. An additional effect of shading is the reduction of temperature, providing an alternative explanation for some of our results. These results broaden our knowledge of how variation in the light environment influences the ecology of estuarine ecosystems.

Preliminary evaluation of an in vivo fluorometer to quantify algal periphyton biomass and community composition

USGS Publications Warehouse

Harris, Theodore D.; Graham, Jennifer L.

2015-01-01

The bbe-Moldaenke BenthoTorch (BT) is an in vivo fluorometer designed to quantify algal biomass and community composition in benthic environments. The BT quantifies total algal biomass via chlorophyll a (Chl-a) concentration and may differentiate among cyanobacteria, green algae, and diatoms based on pigment fluorescence. To evaluate how BT measurements of periphytic algal biomass (as Chl-a) compared with an ethanol extraction laboratory analysis, we collected BT- and laboratory-measured Chl-a data from 6 stream sites in the Indian Creek basin, Johnson County, Kansas, during August and September 2012. BT-measured Chl-a concentrations were positively related to laboratory-measured concentrations (R2 = 0.47); sites with abundant filamentous algae had weaker relations (R2 = 0.27). Additionally, on a single sample date, we used the BT to determine periphyton biomass and community composition upstream and downstream from 2 wastewater treatment facilities (WWTF) that discharge into Indian Creek. We found that algal biomass increased immediately downstream from the WWTF discharge then slowly decreased as distance from the WWTF increased. Changes in periphyton community structure also occurred; however, there were discrepancies between BT- and laboratory-measured community composition data. Most notably, cyanobacteria were present at all sites based on BT measurements but were present at only one site based on laboratory-analyzed samples. Overall, we found that the BT compared reasonably well with laboratory methods for relative patterns in Chl-a but not as well with absolute Chl-aconcentrations. Future studies need to test the BT over a wider range of Chl-aconcentrations, in colored waters, and across various periphyton assemblages.

A river-scale Lagrangian experiment examining controls on phytoplankton dynamics in the presence and absence of treated wastewater effluent high in ammonium

USGS Publications Warehouse

Kraus, Tamara; Carpenter, Kurt; Bergamaschi, Brian; Parker, Alexander; Stumpner, Elizabeth; Downing, Bryan D.; Travis, Nicole; Wilkerson, Frances; Kendall, Carol; Mussen, Timothy

2017-01-01

Phytoplankton are critical component of the food web in most large rivers and estuaries, and thus identifying dominant controls on phytoplankton abundance and species composition is important to scientists, managers, and policymakers. Recent studies from a variety of systems indicate that ammonium ( NH+4) in treated wastewater effluent decreases primary production and alters phytoplankton species composition. However, these findings are based mainly on laboratory and enclosure studies, which may not adequately represent natural systems. To test effects of effluent high in ammonium on phytoplankton at the ecosystem scale, we conducted whole-river–scale experiments by halting discharges to the Sacramento River from the regional wastewater treatment plant (WWTP), and used a Lagrangian approach to compare changes in phytoplankton abundance and species composition in the presence (+EFF) and absence (−EFF) of effluent. Over 5 d of downstream travel from 20 km above to 50 km below the WWTP, chlorophyll concentrations declined from 15–25 to ∼2.5 μg L−1, irrespective of effluent addition. Benthic diatoms were dominant in most samples. We found no significant difference in phytoplankton abundance or species composition between +EFF and −EFF conditions. Moreover, greatest declines in chlorophyll occurred upstream of the WWTP where NH+4 concentrations were low. Grazing by clams and zooplankton could not account for observed losses, suggesting other factors such as hydrodynamics and light limitation were responsible for phytoplankton declines. These results highlight the advantages of conducting ecosystem-scale, Lagrangian-based experiments to understand the dynamic and complex interplay between physical, chemical, and biological factors that control phytoplankton populations.

Climate effects on phytoplankton floral composition in Chesapeake Bay

NASA Astrophysics Data System (ADS)

Harding, L. W.; Adolf, J. E.; Mallonee, M. E.; Miller, W. D.; Gallegos, C. L.; Perry, E. S.; Johnson, J. M.; Sellner, K. G.; Paerl, H. W.

2015-09-01

Long-term data on floral composition of phytoplankton are presented to document seasonal and inter-annual variability in Chesapeake Bay related to climate effects on hydrology. Source data consist of the abundances of major taxonomic groups of phytoplankton derived from algal photopigments (1995-2004) and cell counts (1985-2007). Algal photopigments were measured by high-performance liquid chromatography (HPLC) and analyzed using the software CHEMTAX to determine the proportions of chlorophyll-a (chl-a) in major taxonomic groups. Cell counts determined microscopically provided species identifications, enumeration, and dimensions used to obtain proportions of cell volume (CV), plasma volume (PV), and carbon (C) in the same taxonomic groups. We drew upon these two independent data sets to take advantage of the unique strengths of each method, using comparable quantitative measures to express floral composition for the main stem bay. Spatial and temporal variability of floral composition was quantified using data aggregated by season, year, and salinity zone. Both time-series were sufficiently long to encompass the drought-flood cycle with commensurate effects on inputs of freshwater and solutes. Diatoms emerged as the predominant taxonomic group, with significant contributions by dinoflagellates, cryptophytes, and cyanobacteria, depending on salinity zone and season. Our analyses revealed increased abundance of diatoms in wet years compared to long-term average (LTA) or dry years. Results are presented in the context of long-term nutrient over-enrichment of the bay, punctuated by inter-annual variability of freshwater flow that strongly affects nutrient loading, chl-a, and floral composition. Statistical analyses generated flow-adjusted diatom abundance and showed significant trends late in the time series, suggesting current and future decreases of nutrient inputs may lead to a reduction of the proportion of biomass comprised by diatoms in an increasingly diverse flora.

Distribution of Epiphytic Diatoms in a Sub-Tropical Estuary

NASA Astrophysics Data System (ADS)

Frankovich, T. A.; Gaiser, E. E.; Wachnicka, A.; Zieman, J. C.

2005-05-01

Within estuaries, seagrasses may represent an order of magnitude greater surface area relative to sediments for the colonization and growth of diatoms. Fossil diatom distributions have proven useful in inferring paleoenvironmental conditions. The strength of these inferences is dependent upon defining the environmental relationships of contempory diatom compositions. The present investigation characterized the modern epiphytic diatom flora on the seagrass Thalassia testudinum at seven sites in the sub-tropical Florida Bay estuary and at one Atlantic Ocean site east of the upper Florida Keys. These sites were sampled six times between March 2000 and April 2001. Diatom species composition was related to water quality parameters using multivariate statistics. 338 diatom species were identified. The seven most abundant species from pooled samples were Cocconeis placentula, Brachysira aponina, Nitzschia liebetruthii, Hyalosynedra laevigata, Amphora cf. tenerrima, Mastogloia crucicula, and M. pusilla. These seven species collectively accounted for 51.7 percent of all valves counted and occurred in at least 85 percent of all samples. Analysis of similiarity and NMDS ordination of species relative abundances revealed four distinct diatom communities across the study region. The spatial variability of these communities was correlated with salinity and water-column nutrient availability. Summertime communities were significantly different from winter-spring communities, but these communities showed a gradual temporal progression with much overlap. The temporal variability was correlated with temperature. Indicator species analysis identified many species significantly influencing the four spatial groups. The Atlantic marine site was characterized by many different Mastogloia species and some epipsammic (sand-grain associated) diatoms (i.e., Cymatosira lorenziana, Dimerogramma dubium, and Neofragilaria nicobarica). Mastogloia pusilla, Rhopalodia pacifica, and Cocconeis woodii were strong indicators of the Gulf of Mexico marine site. Reimerothrix floridensis was particularly abundant in the western interior of Florida Bay (i.e., sites 2, 3, and 4) during summer months. The eastern interior of Florida Bay was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii. The optima and tolerance of these indicator species relative to individual water quality parameters were also determined.

Testing Prospects for Reliable Diatom Nanotechnology in Microgravity

NASA Technical Reports Server (NTRS)

Gordon, Richard; Hoover, Richard B.; Tuszynski, Jack A.; deLuis, Javier; Camp, Philip J.; Tiffany, Mary Ann; Nagy, Stephen S.; Lerner, Beatriz E.

2007-01-01

The worldwide effort to grow nanotechnology, rather than use lithography, focuses on diatoms, single cell eukaryotic algae with ornate silica shells, which can be replaced by oxides and ceramics, or reduced to elemental silicon, to create complex nanostructures with compositions of industrial and electronics importance. Diatoms produce an enormous variety of structures, some of which are microtubule dependent and perhaps sensitive to microgravity. The NASA Single Loop for Cell Culture (SLCC) for culturing and observing microorganisms permits inexpensive, low labor in-space experiments. We propose to send up to the International Space Station diatom cultures of the three diatom species whose genomes are being sequenced, plus the giant diatoms of Antarctica (up to 2 mm diameter for a single cell) and the unique colonial diatom, Bacillaria paradoxa. Bacillaria cells move against each other in partial synchrony, like a sliding deck of cards, by a microfluidics mechanism. Will normal diatoms have aberrant pattern and shape or motility compared to ground controls? The generation time is typically one day, so that many generations may be examined from one flight. Rapid, directed evolution may be possible running the SLCC as a compustat. The shell shapes and patterns are preserved in hard silica, so that the progress of normal and aberrant morphogenesis may be followed by drying samples on a moving filter paper "diatom tape recorder". With a biodiversity of 100,000 distinct species, diatom nanotechnology may offer a compact and portable nanotechnology toolkit for exploration anywhere.

Influence of diatom diversity on the ocean biological carbon pump

NASA Astrophysics Data System (ADS)

Tréguer, Paul; Bowler, Chris; Moriceau, Brivaela; Dutkiewicz, Stephanie; Gehlen, Marion; Aumont, Olivier; Bittner, Lucie; Dugdale, Richard; Finkel, Zoe; Iudicone, Daniele; Jahn, Oliver; Guidi, Lionel; Lasbleiz, Marine; Leblanc, Karine; Levy, Marina; Pondaven, Philippe

2018-01-01

Diatoms sustain the marine food web and contribute to the export of carbon from the surface ocean to depth. They account for about 40% of marine primary productivity and particulate carbon exported to depth as part of the biological pump. Diatoms have long been known to be abundant in turbulent, nutrient-rich waters, but observations and simulations indicate that they are dominant also in meso- and submesoscale structures such as fronts and filaments, and in the deep chlorophyll maximum. Diatoms vary widely in size, morphology and elemental composition, all of which control the quality, quantity and sinking speed of biogenic matter to depth. In particular, their silica shells provide ballast to marine snow and faecal pellets, and can help transport carbon to both the mesopelagic layer and deep ocean. Herein we show that the extent to which diatoms contribute to the export of carbon varies by diatom type, with carbon transfer modulated by the Si/C ratio of diatom cells, the thickness of the shells and their life strategies; for instance, the tendency to form aggregates or resting spores. Model simulations project a decline in the contribution of diatoms to primary production everywhere outside of the Southern Ocean. We argue that we need to understand changes in diatom diversity, life cycle and plankton interactions in a warmer and more acidic ocean in much more detail to fully assess any changes in their contribution to the biological pump.

Diatoms and Other Epibionts Associated with Olive Ridley (Lepidochelys olivacea) Sea Turtles from the Pacific Coast of Costa Rica

PubMed Central

Majewska, Roksana; Santoro, Mario; Bolaños, Federico; Chaves, Gerardo; De Stefano, Mario

2015-01-01

Although the sea turtles have long been familiar and even iconic to marine biologists, many aspects of their ecology remain unaddressed. The present study is the first of the epizoic diatom community covering the olive ridley turtle’s (Lepidochelys olivacea) carapace and the first describing diatoms living on sea turtles in general, with the primary objective of providing detailed information on turtle epibiotic associations. Samples of turtle carapace including the associated diatom biofilm and epizoic macro-fauna were collected from Ostional beach (9° 59´ 23.7´´ N 85° 41´ 52.6´´ W), Costa Rica, during the arribada event in October 2013. A complex diatom community was present in every sample. In total, 11 macro-faunal and 21 diatom taxa were recorded. Amongst diatoms, the most numerous were erect (Achnanthes spp., Tripterion spp.) and motile (Haslea sp., Navicula spp., Nitzschia spp., Proschkinia sp.) forms, followed by adnate Amphora spp., while the most common macro-faunal species was Stomatolepas elegans (Cirripedia). Diatom densities ranged from 8179 ± 750 to 27685 ± 4885 cells mm-2. Epizoic microalgae were either partly immersed or entirely encapsulated within an exopolymeric coat. The relatively low diatom species number, stable species composition and low inter-sample dissimilarities (14.4% on average) may indicate a mutualistic relationship between the epibiont and the basibiont. Dispersal of sea turtle diatoms is probably highly restricted and similar studies will help to understand both diatom diversity, evolution and biogeography, and sea turtle ecology and foraging strategies. PMID:26083535

Facile preparation of hierarchically porous diatomite/MFI-type zeolite composites and their performance of benzene adsorption: the effects of NaOH etching pretreatment.

PubMed

Yu, Wenbin; Yuan, Peng; Liu, Dong; Deng, Liangliang; Yuan, Weiwei; Tao, Bo; Cheng, Hefa; Chen, Fanrong

2015-03-21

Hierarchically porous diatomite/MFI-type zeolite (Dt/Z) composites with excellent benzene adsorption performance were prepared. The hierarchical porosity was generated from the microporous zeolite coated at the surface of diatom frustules and from the macroporous diatomite support. A facile NaOH etching method was employed for the first time to treat the frustule support, followed by hydrothermal growth of MFI-type zeolite at the surface of frustules previously seeded with nanocrystalline silicalite-1 (Sil-1). NaOH etching enlarged the pores on diatom frustules and further increased the coated zeolite contents (W(z)). The central macropore size of the diatom frustules increased from approximately 200-500 nm to 400-1000 nm after NaOH etching. The W(z) could reach 61.2%, while the macroporosity of the composites was largely preserved due to more voids for zeolite coating being formed by NaOH etching. The Dt/Z composites exhibited higher benzene adsorption capacity per unit mass of zeolite and less mass transfer resistance than Sil-1, evaluated via a method of breakthrough curves. These results demonstrate that etching of a diatomite support is a facile but crucial process for the preparation of Dt/Z composites, enabling the resulting composites to become promising candidates for uses in volatile organic compounds emission control. Copyright © 2014 Elsevier B.V. All rights reserved.

Variance and Rate-of-Change as Early Warning Signals for a Critical Transition in an Aquatic Ecosystem State: A Test Case From Tasmania, Australia

NASA Astrophysics Data System (ADS)

Beck, Kristen K.; Fletcher, Michael-Shawn; Gadd, Patricia S.; Heijnis, Henk; Saunders, Krystyna M.; Simpson, Gavin L.; Zawadzki, Atun

2018-02-01

Critical transitions in ecosystem states are often sudden and unpredictable. Consequently, there is a concerted effort to identify measurable early warning signals (EWS) for these important events. Aquatic ecosystems provide an opportunity to observe critical transitions due to their high sensitivity and rapid response times. Using palaeoecological techniques, we can measure properties of time series data to determine if critical transitions are preceded by any measurable ecosystem metrics, that is, identify EWS. Using a suite of palaeoenvironmental data spanning the last 2,400 years (diatoms, pollen, geochemistry, and charcoal influx), we assess whether a critical transition in diatom community structure was preceded by measurable EWS. Lake Vera, in the temperate rain forest of western Tasmania, Australia, has a diatom community dominated by Discostella stelligera and undergoes an abrupt compositional shift at ca. 820 cal yr BP that is concomitant with increased fire disturbance of the local vegetation. This shift is manifest as a transition from less oligotrophic acidic diatom flora (Achnanthidium minutissimum, Brachysira styriaca, and Fragilaria capucina) to more oligotrophic acidic taxa (Frustulia elongatissima, Eunotia diodon, and Gomphonema multiforme). We observe a marked increase in compositional variance and rate-of-change prior to this critical transition, revealing these metrics are useful EWS in this system. Interestingly, vegetation remains complacent to fire disturbance until after the shift in the diatom community. Disturbance taxa invade and the vegetation system experiences an increase in both compositional variance and rate-of-change. These trends imply an approaching critical transition in the vegetation and the probable collapse of the local rain forest system.

Connecting pigment composition and dissolved trace elements to phytoplankton population in the southern Benguela Upwelling zone (St. Helena Bay)

NASA Astrophysics Data System (ADS)

Das, Supriyo Kumar; Routh, Joyanto; Roychoudhury, Alakendra N.; Veldhuis, Marcel J. W.; Ismail, Hassan E.

2017-12-01

Rich in upwelled nutrients, the Southern Benguela is one of the most productive ecosystems in the world ocean. However, despite its ecological significance the role of trace elements influencing phytoplankton population in the Southern Benguela Upwelling System (SBUS) has not been thoroughly investigated. Here, we report pigment composition, macronutrients (nitrate, phosphate and silicate) and concentrations of dissolved Cd, Co, Fe and Zn during late austral summer and winter seasons in 2004 to understand the relationship between the selected trace elements and phytoplankton biomass in St. Helena Bay (SHB), which falls within the southern boundary of the SBUS. Chlorophyll a concentrations indicate higher phytoplankton biomass associated with high primary production during late summer in SHB where high diatom population is inferred from the presence of fucoxanthin. Diminished phytoplankton biomass and a shift from diatoms to dinoflagellates as the dominant phytoplankton taxa are indicated by diagnostic pigments during late winter. Dissolved trace elements (Cd, Co and Zn) and macronutrients play a significant role in phytoplankton biomass, and their distribution is affected by biological uptake and export of trace elements. Continuous uptake of Zn by diatoms may cause an onset of Zn depletion leading to a period of extended diatom proliferation during late summer. Furthermore, the transition from diatom to dinoflagellate dominated phytoplankton population is most likely facilitated by depletion of trace elements (Cd and Co) in the water column.

Characterizing the role benthos plays in large coastal seas and estuaries: A modular approach

USGS Publications Warehouse

Tenore, K.R.; Zajac, R.N.; Terwin, J.; Andrade, F.; Blanton, J.; Boynton, W.; Carey, D.; Diaz, R.; Holland, Austin F.; Lopez-Jamar, E.; Montagna, P.; Nichols, F.; Rosenberg, R.; Queiroga, H.; Sprung, M.; Whitlatch, R.B.

2006-01-01

Ecologists studying coastal and estuarine benthic communities have long taken a macroecological view, by relating benthic community patterns to environmental factors across several spatial scales. Although many general ecological patterns have been established, often a significant amount of the spatial and temporal variation in soft-sediment communities within and among systems remains unexplained. Here we propose a framework that may aid in unraveling the complex influence of environmental factors associated with the different components of coastal systems (i.e. the terrestrial and benthic landscapes, and the hydrological seascape) on benthic communities, and use this information to assess the role played by benthos in coastal ecosystems. A primary component of the approach is the recognition of system modules (e.g. marshes, dendritic systems, tidal rivers, enclosed basins, open bays, lagoons). The modules may differentially interact with key forcing functions (e.g. temperature, salinity, currents) that influence system processes and in turn benthic responses and functions. Modules may also constrain benthic characteristics and related processes within certain ecological boundaries and help explain their overall spatio-temporal variation. We present an example of how benthic community characteristics are related to the modular structure of 14 coastal seas and estuaries, and show that benthic functional group composition is significantly related to the modular structure of these systems. We also propose a framework for exploring the role of benthic communities in coastal systems using this modular approach and offer predictions of how benthic communities may vary depending on the modular composition and characteristics of a coastal system. ?? 2006 Elsevier B.V. All rights reserved.

Effect of growth phase on the fatty acid compositions of four species of marine diatoms

NASA Astrophysics Data System (ADS)

Liang, Ying; Mai, Kangsen

2005-04-01

The fatty acid compositions of four species of marine diatoms ( Chaetoceros gracilis MACC/B13, Cylindrotheca fusiformis MACC/B211, Phaeodactylum tricornutum MACC/B221 and Nitzschia closterium MACC/B222), cultivated at 22°C±1°C with the salinity of 28 in f/2 medium and harvested in the exponential growth phase, the early stationary phase and the late stationary phase, were determined. The results showed that growth phase has significant effect on most fatty acid contents in the four species of marine diatoms. The proportions of 16:0 and 16:1n-7 fatty acids increased while those of 16:3n-4 and eicosapentaenoic acid (EPA) decreased with increasing culture age in all species studied. The subtotal of saturated fatty acids (SFA) increased with the increasing culture age in all species with the exception of B13. The subtotal of monounsaturated fatty acids (MUFA) increased while that of polyunsaturated fatty acids (PUFA) decreased with culture age in the four species of marine diatoms. MUFA reached their lowest value in the exponential growth phase, whereas PUFA reached their highest value in the same phase.

Off shore wind farms change the benthic pelagic coupling in the Belgian Part of the North Sea

NASA Astrophysics Data System (ADS)

Vanaverbeke, Jan; Coates, Delphine; Braeckman, Ulrike; Soetaert, Karline; Moens, Tom

2016-04-01

Since Europe enforced renewable energy target figures upon its member states through the implementation of two main European Directives 11 2001/77/EC and 2009/28/EC, the development of offshore wind farms (OWF) has accelerated. Belgium installed OWFs on sandbanks, characterized by permeable sediments, low in organic matter content and a species-poor macrofaunal community with species occurring in low densities. A detailed monitoring campaign in the immediate vicinity of a wind turbine (1-200m), revealed a significant decrease in median grain size and permeability, coinciding with a 6-fold increase in organic matter content. The observed fining of the sediment is explained by an altered benthic-pelagic coupling in the area. The wind turbines are colonized by an abundant fouling community producing high amounts of detritus and faeces, a continuous additional source of organic matter. The changes in sediment composition, and the availability of additional organic matter resulted in drastic increase in macrofaunal densities (from 1390 ind m-2 to 18600 ind m-2), and a change from a species-poor community to a species-rich community dominated by the ecosystem engineer Lanice conchilega. Large densities of L. conchilega, as observed in our samples, are known to trap fine material from the water column, which can result in a further decrease of sediment permeability in the vicinity of the wind turbines. A preliminary experiment, where permeable sediments were subjected to artificial fining, showed a decreased penetration depth of advective water currents and a reduced trapping of diatoms by the sediment in finer sediments. Additionally, sediment community oxygen consumption rates, and efflux of NH4+ from the sediment, measured after a simulated phytoplankton bloom, decreased significantly when sediment permeability was reduced. We hypothesize that the combination of the altered macrofaunal community composition, together with the changes in the physical properties of the sediment matrix, will lead to a change in the biogeochemical properties of the sediment: highly reactive permeable sediments, poor in organic matter will shift towards sediment where organic matter will accumulate. Degradation of organic matter will then no longer be governed by physical processes, but mediated by biological processes (bioturbation, bio-irrigation).

Nematode feeding strategies and the fate of dissolved organic matter carbon in different deep-sea sedimentary environments

NASA Astrophysics Data System (ADS)

Pape, Ellen; van Oevelen, Dick; Moodley, Leon; Soetaert, Karline; Vanreusel, Ann

2013-10-01

Sediments sampled from the Galicia Bank seamount and the adjacent slope (northeast Atlantic), and from a western Mediterranean slope site, were injected onboard with 13C-enriched dissolved organic matter (DOM) to evaluate nematode feeding strategies and the fate of DOM carbon in different benthic environments. We hypothesized that nematode 13C label assimilation resulted from either direct DOM uptake or feeding on 13C labeled bacteria. Slope sediments were injected with glucose ("simple" DOM) or "complex" diatom-derived DOM to investigate the influence of DOM composition on carbon assimilation. The time-series (1, 7 and 14 days) experiment at the seamount site was the first study to reveal a higher 13C enrichment of nematodes than bacteria and sediments after 7 days. Although isotope dynamics indicated that both DOM and bacteria were plausible candidate food sources, the contribution to nematode secondary production and metabolic requirements (estimated from biomass-dependent respiration rates) was higher for bacteria than for DOM at all sites. The seamount nematode community showed higher carbon assimilation rates than the slope assemblages, which may reflect an adaptation to the food-poor environment. Our results suggested that the trophic importance of bacteria did not depend on the amount of labile sedimentary organic matter. Furthermore, there was a discrepancy between carbon assimilation rates observed in the experiments and the feeding type classification, based on buccal morphology. Sites with a similar feeding type composition (i.e. the northeast Atlantic sites) showed large differences in uptake, whilst the nematode assemblages at the two slope sites, which had a differing trophic structure, took up similar amounts of the DOM associated carbon. Our results did not indicate substantial differences in carbon processing related to the complexity of the DOM substrate. The quantity of processed carbon (5-42% of added DOM) was determined by the bacteria, and was primarily respired. The bulk of the added 13C-DOM was not ingested by the benthic biota under study, and a considerable fraction was possibly adsorbed onto the sediment grains.

Species Composition and Habitat Associations of Benthic Algal Assemblages in Headwater Streams of the Sierra Nevada, California

Treesearch

Larry R. Brown; Jason T. May; Carolyn T. Hunsaker

2008-01-01

Despite their trophic importance and potential importance as bioindicators of stream condition, benthic algae have not been well studied in California. In particular there are few studies from small streams in the Sierra Nevada. The objective of this study was to determine the standing crop of chlorophyll-a and benthic algal species assemblages...

Substratum type affects recruitment and development of marine assemblages over artificial substrata: A case study in the Alboran Sea

NASA Astrophysics Data System (ADS)

Sempere-Valverde, Juan; Ostalé-Valriberas, Enrique; Farfán, Gonzalo M.; Espinosa, Free

2018-05-01

There are more than 27,000 harbours along coasts worldwide and construction is expected to increase. The development and application of new ecological engineering ideas, for both old and new structures, is now imperative in order to reduce perturbation on marine coastal biota and to avoid the spread of non-native species. In this study, the early benthic assessment of subtidal and intertidal communities is tracked on five artificial substrata differing in origin, roughness, and chemical composition: Oyster Sandstone, Limestone, Gabbro, Slate and Concrete. Within substrata, Sandstone was the roughest on a 1-2 mm scale. Also, Sandstone and Limestone had predominantly calcareous composition while silicon was abundant in Concrete, Gabbro and Slate. In the intertidal zone, results showed that primary productivity and diatom abundance markedly increased with substratum roughness. In the subtidal zone, species richness and diversity over experimental substrata were lower than in adjacent rocky reefs. Nonetheless, during the first year of colonization communities varied within the experimental substrata. Coverage was higher on Sandstone than Concrete and Gabbro, and species richness was higher on Sandstone than Limestone. The differences are related to intrinsic substratum-type characteristics and showed Limestone, Gabbro and Concrete hold relatively poor ecological benefits in the first phases of ecological succession. The results may help to promote future research in this field and to test different substrata combinations and heterogeneities, for more environmentally sustainable surfaces in design of coastal structures.

The future of the northeast Atlantic benthic flora in a high CO2 world

PubMed Central

Brodie, Juliet; Williamson, Christopher J; Smale, Dan A; Kamenos, Nicholas A; Mieszkowska, Nova; Santos, Rui; Cunliffe, Michael; Steinke, Michael; Yesson, Christopher; Anderson, Kathryn M; Asnaghi, Valentina; Brownlee, Colin; Burdett, Heidi L; Burrows, Michael T; Collins, Sinead; Donohue, Penelope J C; Harvey, Ben; Foggo, Andrew; Noisette, Fanny; Nunes, Joana; Ragazzola, Federica; Raven, John A; Schmidt, Daniela N; Suggett, David; Teichberg, Mirta; Hall-Spencer, Jason M

2014-01-01

Seaweed and seagrass communities in the northeast Atlantic have been profoundly impacted by humans, and the rate of change is accelerating rapidly due to runaway CO2 emissions and mounting pressures on coastlines associated with human population growth and increased consumption of finite resources. Here, we predict how rapid warming and acidification are likely to affect benthic flora and coastal ecosystems of the northeast Atlantic in this century, based on global evidence from the literature as interpreted by the collective knowledge of the authorship. We predict that warming will kill off kelp forests in the south and that ocean acidification will remove maerl habitat in the north. Seagrasses will proliferate, and associated epiphytes switch from calcified algae to diatoms and filamentous species. Invasive species will thrive in niches liberated by loss of native species and spread via exponential development of artificial marine structures. Combined impacts of seawater warming, ocean acidification, and increased storminess may replace structurally diverse seaweed canopies, with associated calcified and noncalcified flora, with simple habitats dominated by noncalcified, turf-forming seaweeds. PMID:25077027

The future of the northeast Atlantic benthic flora in a high CO2 world.

PubMed

Brodie, Juliet; Williamson, Christopher J; Smale, Dan A; Kamenos, Nicholas A; Mieszkowska, Nova; Santos, Rui; Cunliffe, Michael; Steinke, Michael; Yesson, Christopher; Anderson, Kathryn M; Asnaghi, Valentina; Brownlee, Colin; Burdett, Heidi L; Burrows, Michael T; Collins, Sinead; Donohue, Penelope J C; Harvey, Ben; Foggo, Andrew; Noisette, Fanny; Nunes, Joana; Ragazzola, Federica; Raven, John A; Schmidt, Daniela N; Suggett, David; Teichberg, Mirta; Hall-Spencer, Jason M

2014-07-01

Seaweed and seagrass communities in the northeast Atlantic have been profoundly impacted by humans, and the rate of change is accelerating rapidly due to runaway CO2 emissions and mounting pressures on coastlines associated with human population growth and increased consumption of finite resources. Here, we predict how rapid warming and acidification are likely to affect benthic flora and coastal ecosystems of the northeast Atlantic in this century, based on global evidence from the literature as interpreted by the collective knowledge of the authorship. We predict that warming will kill off kelp forests in the south and that ocean acidification will remove maerl habitat in the north. Seagrasses will proliferate, and associated epiphytes switch from calcified algae to diatoms and filamentous species. Invasive species will thrive in niches liberated by loss of native species and spread via exponential development of artificial marine structures. Combined impacts of seawater warming, ocean acidification, and increased storminess may replace structurally diverse seaweed canopies, with associated calcified and noncalcified flora, with simple habitats dominated by noncalcified, turf-forming seaweeds.

Diatom stratigraphy and long-term dissolved silica concentrations in the Baltic Sea

NASA Astrophysics Data System (ADS)

Olli, Kalle; Clarke, Annemarie; Danielsson, Åsa; Aigars, Juris; Conley, Daniel J.; Tamminen, Timo

2008-10-01

In many parts of the world coastal waters with anthropogenic eutrophication have experienced a gradual depletion of dissolved silica (DSi) stocks. This could put pressure on spring bloom diatom populations, e.g. by limiting the intensity of blooms or by causing shifts in species composition. In addition, eutrophication driven enhanced diatom growth is responsible for the redistribution of DSi from the water phase to the sediments, and changes in the growth conditions may be reflected in the sediment diatom stratigraphy. To test for changes in diatom communities we have analyzed four sediment cores from the Baltic Sea covering approximately the last 100 years. The sediment cores originate from the western Gulf of Finland, the Kattegat, the Baltic Proper and the Gulf of Riga. Three out of the four cores reveal only minor changes in composition of diatom assemblages, while the Gulf of Riga core contains major changes, occurring after the second World War. This area is set apart from the other Baltic Sea basins by a high frequency of low after spring bloom DSi concentrations (< 2 µmol L - 1 ) during a relatively well defined time period from 1991-1998. In 1991 to 1993 a rapid decline of DSi spring concentrations and winter stocks (down to 5 µmol L - 1 ) in the Gulf was preceded by exceptionally intense diatom spring blooms dominated by the heavily silicified species Thalassiosira baltica (1991-1992; up to 5.5 mg ww L - 1 ). T. baltica has been the principal spring bloom diatom in the Gulf of Riga since records began in 1975. DSi consumption and biomass yield experiments with cultured T. baltica suggest that intense blooms can potentially exhaust the DSi stock of the water column and exceed the annual Si dissolution in the Gulf of Riga. The phytoplankton time series reveals another exceptional T. baltica bloom period in 1981-1983 (up to 8 mg L - 1 ), which, however, took place before the regular DSi measurements. These periods may be reflected in the conspicuous accumulation of T. baltica frustules in the sediment core corresponding to ca. 1975-1985.

Diatom Derived Polyunsaturated Aldehydes Do Not Structure the Planktonic Microbial Community in a Mesocosm Study

PubMed Central

Paul, Carsten; Reunamo, Anna; Lindehoff, Elin; Bergkvist, Johanna; Mausz, Michaela A.; Larsson, Henrik; Richter, Hannes; Wängberg, Sten-Åke; Leskinen, Piia; Båmstedt, Ulf; Pohnert, Georg

2012-01-01

Several marine and freshwater diatoms produce polyunsaturated aldehydes (PUA) in wound-activated processes. These metabolites are also released by intact diatom cells during algal blooms. Due to their activity in laboratory experiments, PUA are considered as potential mediators of diatom-bacteria interactions. Here, we tested the hypothesis that PUA mediate such processes in a close-to-field mesocosm experiment. Natural plankton communities enriched with Skeletonema marinoi strains that differ in their PUA production, a plankton control, and a plankton control supplemented with PUA at natural and elevated concentrations were observed. We monitored bacterial and viral abundance as well as bacterial community composition and did not observe any influence of PUA on these parameters even at elevated concentrations. We rather detected an alternation of the bacterial diversity over time and differences between the two S. marinoi strains, indicating unique dynamic bacterial communities in these algal blooms. These results suggest that factors other than PUA are of significance for interactions between diatoms and bacteria. PMID:22690143

Diatoms Si uptake capacity drives carbon export in coastal upwelling systems

NASA Astrophysics Data System (ADS)

Abrantes, Fatima; Cermeno, Pedro; Lopes, Cristina; Romero, Oscar; Matos, Lélia; Van Iperen, Jolanda; Rufino, Marta; Magalhães, Vitor

2016-07-01

Coastal upwelling systems account for approximately half of global ocean primary production and contribute disproportionately to biologically driven carbon sequestration. Diatoms, silica-precipitating microalgae, constitute the dominant phytoplankton in these productive regions, and their abundance and assemblage composition in the sedimentary record is considered one of the best proxies for primary production. The study of the sedimentary diatom abundance (SDA) and total organic carbon content (TOC) in the five most important coastal upwelling systems of the modern ocean (Iberia-Canary, Benguela, Peru-Humboldt, California, and Somalia-Oman) reveals a global-scale positive relationship between diatom production and organic carbon burial. The analysis of SDA in conjunction with environmental variables of coastal upwelling systems such as upwelling strength, satellite-derived net primary production, and surface water nutrient concentrations shows different relations between SDA and primary production on the regional scale. On the global scale, SDA appears modulated by the capacity of diatoms to take up silicic acid, which ultimately sets an upper limit to global export production in these ocean regions.

Latest Holocene Climate Variability revealed by a high-resolution multiple Proxy Record off Lisbon (Portugal)

NASA Astrophysics Data System (ADS)

Abrantes, F.; Lebreiro, S.; Ferreira, A.; Gil, I.; Jonsdottir, H.; Rodrigues, T.; Kissel, C.; Grimalt, J.

2003-04-01

The North Atlantic Oscillation (NAO) is known to have a major influence on the wintertime climate of the Atlantic basin and surrounding countries, determining precipitation and wind conditions at mid-latitudes. A comparison of Hurrel's NAO index to the mean winter (January-March) discharge of the Iberian Tagus River reveals a good negative correlation to negative NAO, while the years of largest upwelling anomalies, as referred in the literature, appear to be in good agreement with positive NAO. On this basis, a better understanding of the long-term variability of the NAO and Atlantic climate variability can be gained from high-resolution climate records from the Lisbon area. Climate variability of the last 2,000 years is assessed through a multiple proxy study of sedimentary sequences recovered from the Tagus prodelta deposition center, off Lisbon (Western Iberia). Physical properties, XRF and magnetic properties from core logging, grain size, δ18O, TOC, CaCO3, total alkenones, n-alkanes, alkenone SST, diatoms, benthic and planktonic foraminiferal assemblage compositions and fluxes are the proxies employed. The age model for site D13902 is based on AMS C-14 dates from mollusc and planktonic foraminifera shells, the reservoir correction for which was obtained by dating 3 pre-bomb, mollusc shells from the study area. Preliminary results indicate a Little Ice Age (LIA - 1300 - 1600 AD) alkenone derived SSTs around 15 degC followed by a sharp and rapid increase towards 19 degC. In spite the strong variability observed for most records, this low temperature interval is marked by a general increase in organic carbon, total alkenone concentration, diatom and foraminiferal abundances, as well as an increase in the sediment fine fraction and XRF determined Fe content, pointing to important river input and higher productivity. The Medieval Warm Period (1080 - 1300 AD) is characterized by 17-18 degC SSTs, increased mean grain size, but lower magnetic susceptibility and Fe contents, also accompanied by low values for total alkenone, n-alkanes and organic carbon concentration as well as low diatom abundance which may reflect decreased runoff and productivity. Major peaks in magnetic susceptibility and grain size occur at both periods and are interpreted as the record of flood-like events that are likely to reflect times of primarily negative NAO.

Multiple Routes to Smart Nanostructured Materials from Diatom Microalgae: A Chemical Perspective.

PubMed

Ragni, Roberta; Cicco, Stefania R; Vona, Danilo; Farinola, Gianluca M

2018-05-01

Diatoms are unicellular photosynthetic microalgae, ubiquitously diffused in both marine and freshwater environments, which exist worldwide with more than 100 000 species, each with different morphologies and dimensions, but typically ranging from 10 to 200 µm. A special feature of diatoms is their production of siliceous micro- to nanoporous cell walls, the frustules, whose hierarchical organization of silica layers produces extraordinarily intricate pore patterns. Due to the high surface area, mechanical resistance, unique optical features, and biocompatibility, a number of applications of diatom frustules have been investigated in photonics, sensing, optoelectronics, biomedicine, and energy conversion and storage. Current progress in diatom-based nanotechnology relies primarily on the availability of various strategies to isolate frustules, retaining their morphological features, and modify their chemical composition for applications that are not restricted to those of the bare biosilica produced by diatoms. Chemical or biological methods that decorate, integrate, convert, or mimic diatoms' biosilica shells while preserving their structural features represent powerful tools in developing scalable, low-cost routes to a wide variety of nanostructured smart materials. Here, the different approaches to chemical modification as the basis for the description of applications relating to the different materials thus obtained are presented. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Cenoses of phototrophic algae of ultrasaline lakes in the Kulunda steppe (Altai krai, Russian Federation)

NASA Astrophysics Data System (ADS)

Sapozhnikov, Ph. V.; Kalinina, O. Yu.; Nikitin, M. A.; Samylina, O. S.

2016-01-01

In 2012, expeditions of the Institute of Microbiology, Russian Academy of Sciences, delivered samples of algo-bacterial mats from Kulunda steppe alkaline lakes (Petukhovskoe alkaline lake, Tanatar VI, and Gorchina III). The filamentous alga Ctenocladus circinnatus (Chlorophyta) acted as an edificator of the mats. The composition of cenoses algocomponents also included chlorophytes Dunaliella viridis and Picocystis salinarum as well as diatoms Anomeoneis sphaerophora, Brachysira brebissonii, B. zellensis, Mastogloia pusilla var. subcapitata, Nitzschia amphibia, N. cf. communis, and Nitzschia sp. 1. The composition and structure of phototrophic algae cenoses (including diatom taxocenes) were described for the investigated lakes for the first time. For the period from 2011 to 2012, the total mineralization significantly increased in lakes. This involved sensible alterations of cenoses. B. zellensis was the most permanent component of diatom taxocenes in both seasons. In the summer of 2011, it was often accompanied by A. sphaerophora and B. brebissonii. In the summer of 2012, A. sphaerophora was found only singularly in Lake Gorchina III, and some biotopes of Lake Tanatar VI were massively inhabited by N. cf. communis, including colonies that had not been previously described for the species. The genetic analysis of three diatoms, which are markedly different from each other in their appearance and were sampled from different lakes but were all determined as Nitzschia cf. communis, showed their complete similarity to each other with the 18S rRNA gene fragment and the highest similarity of all the three diatoms with the species Nitzschia communis.

Alterations of pigment composition and their interactions in response to different light conditions in the diatom Chaetoceros gracilis probed by time-resolved fluorescence spectroscopy.

PubMed

Nagao, Ryo; Ueno, Yoshifumi; Yokono, Makio; Shen, Jian-Ren; Akimoto, Seiji

2018-07-01

Maintenance of energy balance under changeable light conditions is an essential function of photosynthetic organisms to achieve efficient photochemical reactions. Among the photosynthetic organisms, diatoms possess light-harvesting fucoxanthin chlorophyll (Chl) a/c-binding protein (FCP) as peripheral antennas. However, how diatoms regulate excitation-energy distribution between FCP and the two photosystem cores during light adaptation is poorly understood. In this study, we examined spectroscopic properties of a marine diatom Chaetoceros gracilis adapted in the dark and at photosynthetic photon flux density at 30 and 300 μmol photons m -2  s -1 . Absorption spectra at 77 K showed significant changes in the Soret region, and 77-K steady-state fluorescence spectra showed significant differences in the spectral shape and relative fluorescence intensity originating from both PSII and PSI, among the cells grown under different light conditions. These results suggest alterations of pigment composition and their interactions under the different light conditions. These alterations affected the excitation-energy dynamics monitored by picosecond time-resolved fluorescence analyses at 77 K significantly. The contributions of Chls having lower energy levels than the reaction center Chls in the two photosystems to the energy dynamics were clearly identified in the three cells but with presumably different roles. These findings provide insights into the regulatory mechanism of excitation-energy balance in diatoms under various light conditions. Copyright © 2018 Elsevier B.V. All rights reserved.

Effects of Didymosphenia geminata massive growth on stream communities: Smaller organisms and simplified food web structure

PubMed Central

Gomà, Joan; Prat, Narcís

2018-01-01

This study aims to contribute to the understanding of the impact of Didymosphenia geminata massive growths upon river ecosystem communities’ composition and functioning. This is the first study to jointly consider the taxonomic composition and functional structure of diatom and macroinvertebrate assemblages in order to determine changes in community structure, and the food web alterations associated with this invasive alga. This study was carried out in the Lumbreras River (Ebro Basin, La Rioja, Northern Spain), which has been affected by a considerable massive growth of D. geminata since 2011. The study shows a profound alteration in both the river community composition and in the food web structure at the sites affected by the massive growth, which is primarily due to the alteration of the environmental conditions, thus demonstrating that D. geminata has an important role as an ecosystem engineer in the river. Thick filamentous mats impede the movement of large invertebrates—especially those that move and feed up on it—and favor small, opportunistic, herbivorous organisms, mainly chironomids, that are capable of moving between filaments and are aided by the absence of large trophic competitors and predators -prey release effect-. Only small predators, such as hydra, are capable of surviving in the new environment, as they are favored by the increase in chironomids, a source of food, and by the reduction in both their own predators and other midge predators -mesopredator release-. This change in the top-down control affects the diatom community, since chironomids may feed on large diatoms, increasing the proportion of small diatoms in the substrate. The survival of small and fast-growing pioneer diatoms is also favored by the mesh of filaments, which offers them a new habitat for colonization. Simultaneously, D. geminata causes a significant reduction in the number of diatoms with similar ecological requirements (those attached to the substrate). Overall, D. geminata creates a community dominated by small organisms that is clearly different from the existing communities in the same stream where there is an absence of massive growths. PMID:29494699

Benthic and Plankton Foraminifers in Hydrothermally Active Zones of the Mid-Atlantic Ridge (MAR)

NASA Astrophysics Data System (ADS)

Khusid, T. A.; Os'kina, N. S.; Lukashina, N. P.; Gablina, I. F.; Libina, N. V.; Matul, A. G.

2018-01-01

Comparison of benthic foraminiferal assemblages from the core obtained within the Peterburgskoe ore field (Mid-Atlantic Ridge) and from the core taken five kilometers away from the ore field revealed evident differences in their composition, in the appearance of their shells, and also in the benthic-plankton species ratio. It was noted that the foraminiferal assemblage from the ore-bearing sediments of the Petersburg field was characterized by a higher relative content of benthic species and a large number of chemically altered and broken shells. The first occurrence of the species Osangularia umbonifera, which is able to exist in lowoxygen and CaCO3-undersaturated bottom waters at the boundary of biogenic sediments surrounding the ore field and in the ore-bearing sediments, was established. In the core section sampled beyond the ore field, the composition of foraminiferal assemblages differs insignificantly from typical oceanic ones.

Production of silver nanoparticles by the diatom Phaeodactylum tricornutum

NASA Astrophysics Data System (ADS)

Wishkerman, Asher; Arad (Malis), Shoshana

2017-05-01

Diatoms (Bacillariophyceae) are the most species-rich group of algae, they are single-celled characterized by a silicified cell wall called a frustule. Diatoms are diverse in shape with many distinct features like raphe and fultoportulae. The diatom cell wall morphology and its hierarchy structure make it a unique unicellular organism for nanotechnology research and applications. Diatom cells are a promising system for green synthesis of nanomaterials like metallic nanoparticles (NPs), nanostructured polymers and other nanomaterials. The production of NPs is achieved today by using methods like attrition or pyrolysis. The cost and the toxic substances often used in these common methods of NPs synthesis limit their applications. Therefore, NPs biosynthesis by diatom cultures, which can be done at ambient CO2 concentrations, temperature and pressure, offers a sustainable alternative solution. In this work, we examined the formation of silver NPs (AgNPs) by the diatom Phaeodactylum tricornutum cultivated at 25°C for a period of 8 days. Using this approach, diatom cultures were either grown throughout the duration of the experiment in an artificial seawater (ASW)-f/2 medium enriched with 1 ppm Ag+ or grown in an ASW-f/2 medium where similar silver ion concentrations were added on experimental day 4. We found that 1 ppm Ag+ reduces the P. tricornutum growth by up to 50% as compared with the control. Moreover, scanning electron microscopy (SEM) in combination with Energy-Dispersive X-ray (EDX) showed the presence of AgNPs nanoparticles with different sizes and chemical composition associated with the diatom frustules and extracellular polymeric substances.

Diatom communities on commercial biocidal fouling control coatings after one year of immersion in the marine environment.

PubMed

Muthukrishnan, Thirumahal; Dobretsov, Sergey; De Stefano, Mario; Abed, Raeid M M; Kidd, Barry; Finnie, Alistair A

2017-08-01

Little is known about the effect of commercial biocidal fouling control coatings on fouling diatom communities and their growth forms after long periods of exposure in the marine tropical environment. The current study investigated the abundance and composition of fouling diatom communities developed on 11 commercially available biocidal antifouling coatings, covering the three main technology types in recent historic use (Self-Polishing Copolymers, Self-Polishing Hybrid and Controlled Depletion Polymers) after one year of static immersion at two locations in Muscat, Oman (Marina Shangri La and Marina Bandar Rowdha). Light microscopy demonstrated that the total abundance of diatoms and the relative abundance of growth forms were significantly affected by the choice of biocidal antifouling coating and experimental location. Using scanning electron microscopy, a total of 21 diatom genera were identified which were grouped into adnate, motile, plocon and erect growth forms. The adnate growth forms, mainly the genera Amphora, Cocconeis and Mastogloia, dominated the other growth forms in terms of their relative abundance. Current results revealed the importance of exposure location and choice of biocidal antifouling coating on the relative abundance of diatom growth forms. Copyright © 2017 Elsevier Ltd. All rights reserved.

Relation of phytoplankton species to ecosystem definition in the northwest Atlantic using remote sensing data

NASA Astrophysics Data System (ADS)

Devred, Emmanuel; Sathyendranath, Shubha; Fuentes-yaco, Cesar; Maass, Heidi; Platt, Trevor

2005-08-01

In this work, we present a new method for dynamic assignment of the boundaries of the ecological provinces of the North West Atlantic. The results are compared with the distribution of diatoms in the study area. Both analyses rely on ocean-colour data for the region. Diatoms were identified using remoteely-sensed data on the basis of their species-dependent absorption characteristics, which were embedded in a simple reflectance model(Sathyendranath et al., 2004). Maps of diatom distributions were produced for the area. Satellite-derived chlorophyll biomass and sea surface temperature (MODIS data) for the same period were used to redefine, in a dynamic way, the static borders of the ecological provinces (Sathyendranath et al., 1995; Longhurst 1998). The analyses were carried on two-week composite images, at different times of the year (April-May, July and October), to examine seasonal variability in the boundaries. The boundaries of provinces and the occurrence of diatoms were spatially coherent. Diatoms were favoured in rich waters on the continental shelf and in cold waters at high latitudes. In provinces labelled as oligotrophic (subtropical gyre and Gulf Stream), very negligible fractions of diatoms were found at any time of the year.

Water-quality parameters and benthic algal communities at selected streams in Minnesota, August 2000 - Study design, methods and data

USGS Publications Warehouse

Lee, K.E.

2002-01-01

This report describes the study design, sampling methods, and summarizes the physical, chemical, and benthic algal data for a component of the multiagency study that was designed to document diurnal water-quality measurements (specific conductance, pH, water temperature, and dissolved oxygen), benthic algal community composition and chlorophyll-a content, and primary productivity at 12 stream sites on 6 streams in Minnesota during August 2000. Specific conductance, pH, water temperature, dissolved oxygen concentrations and percent dissolved oxygen saturation measurements were made with submersible data recorders at 30 minute intervals for a period of 3-6 days during August 2000. Benthic algae collected from wood and rock substrate were identified and enumerated. Biovolume (volume of algal cells per unit area), density (number of cells per unit area), and chlorophyll-a content from benthic algae were determined. These data can be used as part of the multiagency study to develop an understanding of the relations among nutrient concentrations, algal abundance, algal community composition, and primary production and respiration processes in rivers of differing ecoregions in Minnesota.

Algal and Invertebrate Community Composition along Agricultural Gradients: A Comparative Study from Two Regions of the Eastern United States

USGS Publications Warehouse

Calhoun, Daniel L.; Gregory, M. Brian; Weyers, Holly S.

2008-01-01

Benthic algal and invertebrate communities in two Coastal Plain regions of the Eastern United States?the Delmarva Peninsula (27 sites) and Georgia Upper Coastal Plain (29 sites)?were assessed to determine if aspects of agricultural land use and nutrient conditions (dissolved and whole-water nitrogen and phosphorus) could be linked to biological community compositions. Extensive effort was made to compile land-use data describing the basin and riparian conditions at multiple scales to determine if scale played a role in these relations. Large differences in nutrient condition were found between the two study areas, wherein on average, the Delmarva sites had three times the total phosphorus and total nitrogen as did the sites in the Georgia Upper Coastal Plain. A statistical approach was undertaken that included multivariate correlations between Bray-Curtis similarity matrices of the biological communities and Euclidean similarity matrices of instream nutrients and land-use categories. Invertebrate assemblage composition was most associated with land use near the sampled reach, and algal diatom assemblage composition was most associated with land use farther from the streams and into the watersheds. Link tree analyses were conducted to isolate portions of nonmetric multidimensional scaling ordinations of community compositions that could be explained by break points in abiotic datasets. Invertebrate communities were better defined by factors such as agricultural land use near streams and geographic position. Algal communities were better defined by agricultural land use at the basin scale and instream nutrient chemistry. Algal autecological indices were more correlated with gradients of nutrient condition than were typically employed invertebrate metrics and may hold more promise in indicating nutrient impairment in these regions. Nutrient conditions in the respective study areas are compared to draft nutrient criteria established by the U.S. Environmental Protection Agency. Substantial reductions in some nutrients would be required to meet proposed reference conditions on the Delmarva Peninsula.

Metatranscriptome analyses indicate resource partitioning between diatoms in the field.

PubMed

Alexander, Harriet; Jenkins, Bethany D; Rynearson, Tatiana A; Dyhrman, Sonya T

2015-04-28

Diverse communities of marine phytoplankton carry out half of global primary production. The vast diversity of the phytoplankton has long perplexed ecologists because these organisms coexist in an isotropic environment while competing for the same basic resources (e.g., inorganic nutrients). Differential niche partitioning of resources is one hypothesis to explain this "paradox of the plankton," but it is difficult to quantify and track variation in phytoplankton metabolism in situ. Here, we use quantitative metatranscriptome analyses to examine pathways of nitrogen (N) and phosphorus (P) metabolism in diatoms that cooccur regularly in an estuary on the east coast of the United States (Narragansett Bay). Expression of known N and P metabolic pathways varied between diatoms, indicating apparent differences in resource utilization capacity that may prevent direct competition. Nutrient amendment incubations skewed N/P ratios, elucidating nutrient-responsive patterns of expression and facilitating a quantitative comparison between diatoms. The resource-responsive (RR) gene sets deviated in composition from the metabolic profile of the organism, being enriched in genes associated with N and P metabolism. Expression of the RR gene set varied over time and differed significantly between diatoms, resulting in opposite transcriptional responses to the same environment. Apparent differences in metabolic capacity and the expression of that capacity in the environment suggest that diatom-specific resource partitioning was occurring in Narragansett Bay. This high-resolution approach highlights the molecular underpinnings of diatom resource utilization and how cooccurring diatoms adjust their cellular physiology to partition their niche space.

Experimental analysis of the effects of consumer exclusion on recruitment and succession of a coral reef system along a water quality gradient in the Spermonde Archipelago, Indonesia

NASA Astrophysics Data System (ADS)

Plass-Johnson, Jeremiah G.; Heiden, Jasmin P.; Abu, Nur; Lukman, Muhammad; Teichberg, Mirta

2016-03-01

The composition of coral reef benthic communities is strongly affected by variation in water quality and consumer abundance and composition. This is particularly evident in highly populated coastal regions where humans depend on coral reef resources and where terrestrial run-off can change the chemical composition of the water. We tested the effects of grazing pressure and ambient water conditions along an established eutrophication gradient on the recruitment and successional development of benthic communities of the Spermonde Archipelago, Indonesia, through caging experiments with settlement tiles. Within 1 month, benthic community composition of the closest reef to land, near the city of Makassar, was significantly different from other sites further offshore, driven primarily by differences in recruitment of invertebrates or turf algae. In contrast to other caging experiments, consumer exclusion had no effect after 3 months, suggesting that larger, mobile consumers had little effect on the benthic communities of these reefs at all sites. Despite conditions that usually favour macroalgal development, this group was rarely observed on recruitment tiles even after 4 months of consumer exclusion. Furthermore, tiles from both the caged and open treatments retained high proportions of open space indicating the possible role of small-sized or non-fish consumers that were not excluded from the experiment. These results indicate that, unlike many other studies, benthic consumers in the Spermonde Archipelago had little effect on the recruitment and early succession of the reef habitat and that unexamined biota such as mesograzers may be significant in degraded systems.

Transported biofilms and their influence on subsequent macrofouling colonization.

PubMed

Sweat, L Holly; Swain, Geoffrey W; Hunsucker, Kelli Z; Johnson, Kevin B

2017-05-01

Biofilm organisms such as diatoms are potential regulators of global macrofouling dispersal because they ubiquitously colonize submerged surfaces, resist antifouling efforts and frequently alter larval recruitment. Although ships continually deliver biofilms to foreign ports, it is unclear how transport shapes biofilm microbial structure and subsequent macrofouling colonization. This study demonstrates that different ship hull coatings and transport methods change diatom assemblage composition in transported coastal marine biofilms. Assemblages carried on the hull experienced significant cell losses and changes in composition through hydrodynamic stress, whereas those that underwent sheltered transport, even through freshwater, were largely unaltered. Coatings and their associated biofilms shaped distinct macrofouling communities and affected recruitment for one third of all species, while biofilms from different transport treatments had little effect on macrofouling colonization. These results demonstrate that transport conditions can shape diatom assemblages in biofilms carried by ships, but the properties of the underlying coatings are mainly responsible for subsequent macrofouling. The methods by which organisms colonize and are transferred by ships have implications for their distribution, establishment and invasion success.

Simulated terrestrial runoff triggered a phytoplankton succession and changed seston stoichiometry in coastal lagoon mesocosms.

PubMed

Deininger, A; Faithfull, C L; Lange, K; Bayer, T; Vidussi, F; Liess, A

2016-08-01

Climate change scenarios predict intensified terrestrial storm runoff, providing coastal ecosystems with large nutrient pulses and increased turbidity, with unknown consequences for the phytoplankton community. We conducted a 12-day mesocosm experiment in the Mediterranean Thau Lagoon (France), adding soil (simulated runoff) and fish (different food webs) in a 2 × 2 full factorial design and monitored phytoplankton composition, shade adaptation and stoichiometry. Diatoms (Chaetoceros) increased four-fold immediately after soil addition, prymnesiophytes and dinoflagellates peaked after six- and 12 days, respectively. Soil induced no phytoplankton shade adaptation. Fish reduced the positive soil effect on dinoflagellates (Scripsiella, Glenodinium), and diatom abundance in general. Phytoplankton community composition drove seston stoichiometry. In conclusion, pulsed terrestrial runoff can cause rapid, low quality (high carbon: nutrient) diatom blooms. However, bloom duration may be short and reduced in magnitude by fish. Thus, climate change may shift shallow coastal ecosystems towards famine or feast dynamics. Copyright © 2016 Elsevier Ltd. All rights reserved.

Achnanthidium minutissimum (Bacillariophyta) valve deformities as indicators of metal enrichment in diverse widely-distributed freshwater habitats.

PubMed

Cantonati, Marco; Angeli, Nicola; Virtanen, Laura; Wojtal, Agata Z; Gabrieli, Jacopo; Falasco, Elisa; Lavoie, Isabelle; Morin, Soizic; Marchetto, Aldo; Fortin, Claude; Smirnova, Svetlana

2014-03-15

In the presence of different environmental stressors, diatoms can produce frustules presenting different types of deformities. Metals and trace elements are among the most common causes of these teratological forms. Metal enrichment in water bodies can be attributed to the geological setting of the area or to pollution. The widespread benthic diatom Achnanthidium minutissimum (ADMI) is one of the most metal-tolerant species. In the present study, ADMI teratologies were defined from samples taken from eight very diverse, widely-distributed inland-water habitats: streams affected by active and abandoned mining areas, a metal-contaminated stream, a spring in an old chalcopyrite mine, a mineral-water fountain, and a sediment core taken from a lake affected by metal contamination in the past. Deformed frustules of ADMI were characterised mainly by one (sometimes two) more or less bent off ending, conferring to the specimens a cymbelloid outline (cymbelliclinum-like teratology, CLT). Marked teratologies were distinguished from slight deformities. Hydrochemical analyses, including metals and trace elements, were carried out and enrichment factors (EF) relative to average crustal composition were calculated. To improve our knowledge on the potential of different metals and trace elements to trigger the occurrence of ADMI CLT, we carefully selected 15 springs out of 110 (CRENODAT dataset) where both ADMI and above-average metal or metalloid concentrations occurred, and re-analysed these samples. The results from the eight widely-distributed core sites as well as from the 15 selected CRENODAT springs led to the hypothesis that two metals (copper and zinc) and a metalloid (antimony) were the most likely triggers of ADMI CLT formation. From a quantitative point of view, it is worth noting that the lowest concentrations triggering ADMI CLT can be fairly low, particularly in the case of copper contamination. The antimony-rich site was characterised by a marked-teratology variant where both ends of ADMI were bent off. © 2013 Elsevier B.V. All rights reserved.

Dynamic sinking behaviour in marine phytoplankton: rapid changes in buoyancy may aid in nutrient uptake.

PubMed

Gemmell, Brad J; Oh, Genesok; Buskey, Edward J; Villareal, Tracy A

2016-10-12

Phytoplankton sinking is an important property that can determine community composition in the photic zone and material loss to the deep ocean. To date, studies of diatom suspension have relied on bulk measurements with assumptions that bulk rates adequately capture the essential characteristics of diatom sinking. However, recent work has illustrated that individual diatom sinking rates vary considerably from the mean bulk rate. In this study, we apply high-resolution optical techniques, individual-based observations of diatom sinking and a recently developed method of flow visualization around freely sinking cells. The results show that in both field samples and laboratory cultures, some large species of centric diatoms are capable of a novel behaviour, whereby cells undergo bursts of rapid sinking that alternate with near-zero sinking rates on the timescales of seconds. We also demonstrate that this behaviour is under direct metabolic control of the cell. We discuss these results in the context of implications for nutrient flux to the cell surface. While nutrient flux in large diatoms increases during fast sinking, current mass transport models cannot incorporate the unsteady sinking behaviour observed in this study. However, large diatoms appear capable of benefiting from the enhanced nutrient flux to their surface during rapid sinking even during brief intervening periods of near-zero sinking rates. © 2016 The Author(s).

Diatom-templated TiO2 with enhanced photocatalytic activity: biomimetics of photonic crystals

NASA Astrophysics Data System (ADS)

He, Jiao; Chen, Daomei; Li, Yongli; Shao, Junlong; Xie, Jiao; Sun, Yuejuan; Yan, Zhiying; Wang, Jiaqiang

2013-11-01

The siliceous frustules with sophisticated optical structure endow diatoms with superior solar light-harvesting abilities for effective photosynthesis. The preserved frustules of diatom ( Cocconeis placentula) cells, as biophotonic crystals, were thus employed as both hard templates and silicon resources to synthesize TiO2 photocatalyst. Characterizations by a combination of physicochemical techniques proved that the bio-inspired sample is TiO2-coated SiO2 with biogenic C self-doped in. It was found that the synthesized composites exhibited similar morphologies to the original diatom templates. In comparison with commercial Degussa P25 TiO2, the C-doped TiO2/SiO2 catalyst exhibited more light absorption in the visible region and higher photocatalytic efficiency for photodegradation of rhodamine B under visible light due to the biomorphic hierarchical structures, TiO2 coating and C-doping.

Bacteria Interactions with Dying Diatoms

NASA Astrophysics Data System (ADS)

Smriga, S.; Juarez, G.; Fernandez, V.; Stocker, R.

2016-02-01

Dying phytoplankton are surrounded by microscale gradients of dissolved organic matter (DOM) that can attract bacteria. These 'phycospheres' may impact the trophic transfer of DOM in the marine microbial food web and enable the growth of bacterial populations, yet these effects remain poorly quantified particularly in relation to the physiological state of the phytoplankton. We dissected phycosphere interactions at unprecedented spatial and temporal resolution using the model diatom Thalassiosira weissflogii and the bacterium Marinobacter adhaerans. Diatom stress was stimulated by addition of polyunsaturated aldehyde (PUA) and both diatom and bacterial responses were captured via time-lapse fluorescence microscopy. We found that stressed diatoms underwent lysis 10-15 h after PUA treatment. Coordinated with the timing of this transition into phytodetritus, wild-type Marinobacter accumulated via chemotaxis near the diatoms immediately following lysis. In contrast, at lysis there was no accumulation of either a non-chemotactic or a non-motile mutant of Marinobacter, pointing to behavioral rather than demographic responses as drivers for the accumulation. Despite the lack of response, non-chemotactic as well as non-swimming bacterial cells that by chance attached to or were located near (<30 µm) stressed diatoms experienced more growth than cells further afield. Growth within the phycosphere was even greater after diatom lysis. Through quantification at the microscale, these results reveal that chemotaxis may precede rapid bacterial attachment to stressed and dying diatoms and may be integral to the microbial colonization of new phytodetritus during phytoplankton blooms and bloom collapses in coastal ecosystems. Even while chemotactic cells retain a growth advantage given their ability to sense and respond to lysis events, phycosphere DOM provides growth benefits to both motile and non-motile taxa that become attached to or happen to be co-located with new phytodetrital particles, thus likely influencing the composition of particle-attached microbial communities.

Development of a diatom-based multimetric index for acid mine drainage impacted depressional wetlands.

PubMed

Riato, Luisa; Leira, Manel; Della Bella, Valentina; Oberholster, Paul J

2018-01-15

Acid mine drainage (AMD) from coal mining in the Mpumalanga Highveld region of South Africa has caused severe chemical and biological degradation of aquatic habitats, specifically depressional wetlands, as mines use these wetlands for storage of AMD. Diatom-based multimetric indices (MMIs) to assess wetland condition have mostly been developed to assess agricultural and urban land use impacts. No diatom MMI of wetland condition has been developed to assess AMD impacts related to mining activities. Previous approaches to diatom-based MMI development in wetlands have not accounted for natural variability. Natural variability among depressional wetlands may influence the accuracy of MMIs. Epiphytic diatom MMIs sensitive to AMD were developed for a range of depressional wetland types to account for natural variation in biological metrics. For this, we classified wetland types based on diatom typologies. A range of 4-15 final metrics were selected from a pool of ~140 candidate metrics to develop the MMIs based on their: (1) broad range, (2) high separation power and (3) low correlation among metrics. Final metrics were selected from three categories: similarity to reference sites, functional groups, and taxonomic composition, which represent different aspects of diatom assemblage structure and function. MMI performances were evaluated according to their precision in distinguishing reference sites, responsiveness to discriminate reference and disturbed sites, sensitivity to human disturbances and relevancy to AMD-related stressors. Each MMI showed excellent discriminatory power, whether or not it accounted for natural variation. However, accounting for variation by grouping sites based on diatom typologies improved overall performance of MMIs. Our study highlights the usefulness of diatom-based metrics and provides a model for the biological assessment of depressional wetland condition in South Africa and elsewhere. Copyright © 2017 Elsevier B.V. All rights reserved.

Local versus landscape spatial influence on biodiversity: a case study across five European industrialized areas.

PubMed

Piano, E; Isaia, M; Falasco, E; La Morgia, V; Soldato, G; Bona, F

2017-03-01

Land use change-mostly habitat loss and fragmentation-has been recognized as one of the major drivers of biodiversity loss worldwide. According to the habitat amount hypothesis, these phenomena are mostly driven by the habitat area effect. As a result, species richness is a function of both the extent of suitable habitats and their availability in the surrounding landscape, irrespective of the dimension and isolation of patches of suitable habitat. In this context, we tested how the extent of natural areas, selected as proxies of suitable habitats for biodiversity, influences species richness in highly anthropogenic landscapes. We defined five circular sampling areas of 5 km radius, including both natural reserves and anthropogenic land uses, centred in five major industrial sites in France, Italy and Germany. We monitored different biodiversity indicators for both terrestrial and aquatic ecosystems, including breeding birds, diurnal butterflies, grassland vegetation, odonata, amphibians, aquatic plants and benthic diatoms. We studied the response of the different indicators to the extent of natural land uses in the sampling area (local effect) and in the surrounding landscape (landscape effect), identified as a peripheral ring encircling the sampling area. Results showed a positive response of five out of seven biodiversity indicators, with aquatic plants and odonata responding positively to the local effect, while birds, vegetation and diatoms showed a positive response to the landscape effect. Diatoms also showed a significant combined response to both effects. We conclude that surrounding landscapes act as important biodiversity sources, increasing the local biodiversity in highly anthropogenic contexts.

Limnological and climatic environments at Upper Klamath Lake, Oregon during the past 45 000 years

USGS Publications Warehouse

Bradbury, J.P.; Colman, Steven M.; Dean, W.E.

2004-01-01

Upper Klamath Lake, in south-central Oregon, contains long sediment records with well-preserved diatoms and lithological variations that reflect climate-induced limnological changes. These sediment archives complement and extend high resolution terrestrial records along a north-south transect that includes areas influenced by the Aleutian Low and Subtropical High, which control both marine and continental climates in the western United States. The longest and oldest core collected in this study came from the southwest margin of the lake at Caledonia Marsh, and was dated by radiocarbon and tephrochronology to an age of about 45 ka. Paleolimnological interpretations of this core, based upon geochemical and diatom analyses, have been augmented by data from a short core collected from open water environments at nearby Howards Bay and from a 9-m core extending to 15 ka raised from the center of the northwestern part of Upper Klamath Lake. Pre- and full-glacial intervals of the Caledonia Marsh core are characterized and dominated by lithic detrital material. Planktic diatom taxa characteristic of cold-water habitats (Aulacoseira subarctica and A. islandica) alternate with warm-water planktic diatoms (A. ambigua) between 45 and 23 ka, documenting climate changes at millennial scales during oxygen isotope stage (OIS) 3. The full-glacial interval contains mostly cold-water planktic, benthic, and reworked Pliocene lacustrine diatoms (from the surrounding Yonna Formation) that document shallow water conditions in a cold, windy environment. After 15 ka, diatom productivity increased. Organic carbon and biogenic silica became significant sediment components and diatoms that live in the lake today, indicative of warm, eutrophic water, became prominent. Lake levels fell during the mid-Holocene and marsh environments extended over the core site. This interval is characterized by high levels of organic carbon from emergent aquatic vegetation (Scirpus) and by the Mazama ash (7.55 ka), generated by the eruption that created nearby Crater Lake. For a brief time the ash increased the salinity of Upper Klamath Lake. High concentrations of molybdenum, arsenic, and vanadium indicate that Caledonia Marsh was anoxic from about 7 to 5 ka. After the mid-Holocene, shallow, but open-water environments returned to the core site. The sediments became dominated (>80%) by biogenic silica. The open-water cores show analogous but less extreme limnological and climatic changes more typical of mid-lake environments. Millennial-scale lake and climate changes during OIS 3 at Upper Klamath Lake contrast with a similar record of variation at Owens Lake, about 750 km south. When Upper Klamath Lake experienced cold-climate episodes during OIS 3, Owens Lake had warm but wet episodes; the reverse occurred during warmer intervals at Upper Klamath Lake. Such climatic alternations apparently reflect the variable position and strength of the Aleutian Low during the mid-Wisconsin.

Understanding the effects of predictability, duration, and spatial pattern of drying on benthic invertebrate assemblages in two contrasting intermittent streams

PubMed Central

von Schiller, Daniel; Barberá, Gonzalo G.; Díaz, Angela M.; Arce, Maria Isabel; del Campo, Rubén; Tockner, Klement

2018-01-01

In the present study, we examined the effects of different drying conditions on the composition, structure and function of benthic invertebrate assemblages. We approached this objective by comparing invertebrate assemblages in perennial and intermittent sites along two intermittent Mediterranean streams with contrasting predictability, duration, and spatial patterns of drying: Fuirosos (high predictability, short duration, downstream drying pattern) and Rogativa (low predictability, long duration, patchy drying pattern). Specifically, we quantified the contribution of individual taxa to those differences, the degree of nestedness, and shifts in the composition, structure and function of benthic invertebrate assemblages along flow intermittence gradients. We observed greater effects of drying on the benthic invertebrate composition in Fuirosos than in Rogativa, resulting in a higher dissimilarity of assemblages between perennial and intermittent sites, as well as a lower degree of nestedness. Furthermore, a higher number of biotic metrics related to richness, abundance and biological traits were significantly different between perennial and intermittent sites in Fuirosos, despite a shorter dry period compared to Rogativa. At the same time, slightly different responses were detected during post-drying (autumn) than pre-drying (spring) conditions in this stream. In Rogativa, shifts in benthic invertebrate assemblages along increasing gradients of flow intermittence were found for three metrics (Ephemeroptera, Plecoptera and Trichoptera (EPT) and Odonata, Coleoptera and Heteroptera (OCH) abundances and aerial active dispersal. Furthermore, we demonstrated that combined gradients of dry period duration and distance to nearest perennial reach can generate complex, and different, responses of benthic invertebrate assemblages, depending on the flow intermittence metric. Our study advances the notion that special attention should be paid to the predictability, duration and spatial patterns of drying in intermittent streams in order to disentangle the effects of drying on benthic invertebrate assemblages, in particular in areas subject to high spatial heterogeneity and temporal variability in drying conditions. PMID:29590140

Effect of recreational diving on Patagonian rocky reefs.

PubMed

Bravo, Gonzalo; Márquez, Federico; Marzinelli, Ezequiel M; Mendez, María M; Bigatti, Gregorio

2015-03-01

Tourism has grown considerably in the last decades, promoting activities such as recreational SCUBA diving that may affect marine benthic communities. In Puerto Madryn, Patagonia Argentina, sub-aquatic tourism areas (STA) receive about 7,000 divers per year. Diving is concentrated on a few small rocky reefs and 50% of the dives occur in summer. In this work, we evaluated the effect of recreational diving activities on benthic communities and determined whether diving causes a press (long-term) or a pulse (short-term) response. We quantified the percentage cover of benthic organisms and compared benthic assemblage structure and composition between two sites with contrasting usage by divers, 'highly disturbed' and 'moderately disturbed' sites, and two 'control' sites with similar physical characteristics but no diving activity, twice before and after the diving peak in summer. We found differences in benthic assemblage structure (identity and relative abundance of taxa) and composition (identity only) among diving sites and controls. These differences were consistent before and after the peak of diving in summer, suggesting that recreational diving may produce a press impact on overall benthic assemblage structure and composition in these STA. At the moderately disturbed site, however, covers of specific taxa, such as some key habitat-forming or highly abundant species, usually differed from those in controls only immediately after summer, after which they begun to resemble controls, suggesting a pulse impact. Thus, STA in Golfo Nuevo seem to respond differently to disturbances of diving depending on the usage of the sites. This information is necessary to develop sound management strategies in order to preserve local biodiversity. Copyright © 2014 Elsevier Ltd. All rights reserved.

Insights into global diatom distribution and diversity in the world's ocean.

PubMed

Malviya, Shruti; Scalco, Eleonora; Audic, Stéphane; Vincent, Flora; Veluchamy, Alaguraj; Poulain, Julie; Wincker, Patrick; Iudicone, Daniele; de Vargas, Colomban; Bittner, Lucie; Zingone, Adriana; Bowler, Chris

2016-03-15

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 size-fractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.

Insights into global diatom distribution and diversity in the world’s ocean

PubMed Central

Malviya, Shruti; Scalco, Eleonora; Audic, Stéphane; Vincent, Flora; Veluchamy, Alaguraj; Poulain, Julie; Wincker, Patrick; Iudicone, Daniele; de Vargas, Colomban; Bittner, Lucie; Zingone, Adriana; Bowler, Chris

2016-01-01

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 size-fractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron. We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered. PMID:26929361

Direct versus indirect climate controls on Holocene diatom assemblages in a sub-tropical deep, alpine lake (Lugu Hu, Yunnan, SW China)

NASA Astrophysics Data System (ADS)

Wang, Qian; Yang, Xiangdong; Anderson, Nicholas John; Dong, Xuhui

2016-07-01

The reconstruction of Holocene environmental changes in lakes on the plateau region of southwest China provides an understanding of how these ecosystems may respond to climate change. Fossil diatom assemblages were investigated from an 11,000-year lake sediment core from a deep, alpine lake (Lugu Hu) in southwest China, an area strongly influenced by the southwest (or the Indian) summer monsoon. Changes in diatom assemblage composition, notably the abundance of the two dominant planktonic species, Cyclotella rhomboideo-elliptica and Cyclostephanos dubius, reflect the effects of climate variability on nutrient dynamics, mediated via thermal stratification (internal nutrient cycling) and catchment-vegetation processes. Statistical analyses of the climate-diatom interactions highlight the strong effect of changing orbitally-induced solar radiation during the Holocene, presumably via its effect on the lake's thermal budget. In a partial redundancy analysis, climate (solar insolation) and proxies reflecting catchment process (pollen percentages, C/N ratio) were the most important drivers of diatom ecological change, showing the strong effects of climate-catchment-vegetation interactions on lake functioning. This diatom record reflects long-term ontogeny of the lake-catchment ecosystem and suggests that climatic changes (both temperature and precipitation) impact lake ecology indirectly through shifts in thermal stratification and catchment nutrient exports.

Extremely heat tolerant photosymbiosis in a shallow marine benthic foraminifera

NASA Astrophysics Data System (ADS)

Schmidt, Christiane; Danna, Titelboim; Janett, Brandt; Raphael, Morard; Barak, Herut; Sigal, Abramovich; Ahuva, Almogi-Labin; Michal, Kucera

2016-04-01

Thermal stress leads to the loss of algal symbionts (bleaching) in many shallow marine calcifiers including foraminifera. The bleaching threshold often occurs at water temperatures, which are likely to be exceeded in the near future due to global warming. Preadaptation represents one mechanism allowing photosymbiotic organisms to persist under warmer conditions, providing the tolerance can be carried to new habitats. Here we provide evidence for the existence of such adaptation in the benthic foraminifera Pararotalia calcariformata recently discovered in the eastern Mediterranean. We identify its symbionts as a consortium of diatom species dominated by Minutocellus polymorphus. We show that in the field, the foraminifera retains its pigments at a thermally polluted site, where peak water temperatures reach 36°C. To test whether this tolerance represents a widespread adaptation, we conducted manipulative experiments exposing populations from an unpolluted site to elevated temperatures for up to three weeks. The populations were kept in co-culture with the more thermally sensitive diatom-bearing foraminifera Amphistegina lobifera. Reduced photosynthetic activity in A. lobifera occurred at 32°C whereas photochemical stress in P. calcariformata was first observed during exposure to 36°C and chronic photoinhibition (but not mortality) first occurred at 42°C. Survivorship was high in all treatments, and growth was observed under thermal conditions similar to summer maxima at the thermally polluted site (35-36°C). The photosymbiosis in P. calcariformata is unusually thermally tolerant for a photosymbiont-bearing eukaryote. The thermal tolerance of this photosymbiosis is present in a natural environment where its thermal threshold is never realized. These observations imply that photosymbiosis in marine protists can respond to elevated temperatures by drawing on a pool of naturally occurring pre-adaptations. It also provides a perspective on the massive occurrence of symbiont-bearing foraminifera in the early Cenozoic hothouse climate.

Landuse legacies and small streams: Identifying relationships between historical land use and contemporary stream conditions

USGS Publications Warehouse

Maloney, K.O.; Feminella, J.W.; Mitchell, R.M.; Miller, S.A.; Mulholland, P.J.; Houser, J.N.

2008-01-01

The concept of landscape legacies has been examined extensively in terrestrial ecosystems and has led to a greater understanding of contemporary ecosystem processes. However, although stream ecosystems are tightly coupled with their catchments and, thus, probably are affected strongly by historical catchment conditions, few studies have directly examined the importance of landuse legacies on streams. We examined relationships between historical land use (1944) and contemporary (2000-2003) stream physical, chemical, and biological conditions after accounting for the influences of contemporary land use (1999) and natural landscape (catchment size) variation in 12 small streams at Fort Benning, Georgia, USA. Most stream variables showed strong relationships with contemporary land use and catchment size; however, after accounting for these factors, residual variation in many variables remained significantly related to historical land use. Residual variation in benthic particulate organic matter, diatom density, % of diatoms in Eunotia spp., fish density in runs, and whole-stream gross primary productivity correlated negatively, whereas streamwater pH correlated positively, with residual variation in fraction of disturbed land in catchments in 1944 (i.e., bare ground and unpaved road cover). Residual variation in % recovering land (i.e., early successional vegetation) in 1944 was correlated positively with residual variation in streambed instability, a macroinvertebrate biotic index, and fish richness, but correlated negatively with residual variation in most benthic macroinvertebrate metrics examined (e.g., Chironomidae and total richness, Shannon diversity). In contrast, residual variation in whole-stream respiration rates was not explained by historical land use. Our results suggest that historical land use continues to influence important physical and chemical variables in these streams, and in turn, probably influences associated biota. Beyond providing insight into biotic interactions and their associations with environmental conditions, identification of landuse legacies also will improve understanding of stream impairment in contemporary minimally disturbed catchments, enabling more accurate assessment of reference conditions in studies of biotic integrity and restoration. ?? 2008 by The North American Benthological Society.

The role of water chemistry and geomorphic control in the presence of Didymosphenia geminata in Quebec

NASA Astrophysics Data System (ADS)

Gillis, C.; Gabor, R. S.; Cullis, J. D.; Ran, L.; Hassan, M. A.

2010-12-01

Didymosphenia geminata (didymo), an invasive diatom, was first officially observed and identified in the Matapedia River in Eastern Quebec in July 2006. This Atlantic salmon fishing river has several characteristics shown to favor didymo's ability to form thick, extensive benthic mats, including stable flow and oligotrophic nutrient conditions. Since the incursion, rapid colonization and inter-catchment transfer processes were observed, notably in surrounding watersheds on the Gaspé Peninsula as well as in northern New-Brunswick. All affected watersheds share favorable characteristics for didymo growth, including high light, low nutrient waters, and stable substrate. The nearby North Shore of the St. Lawrence, which also contains rivers with conditions that would favor didymo growth, has not yet shown didymo presence. This system provides a comparison to identify necessary parameters for didymo growth, with differences primarily due to geology-driven water chemistry. Pre-incursion water chemistry was compared between the two regions. Rivers in the region where didymo is present displayed a high alkalinity and corresponding higher pH, due to increases concentrations of magnesium and calcium, than rivers in regions where didymo has not appeared. Also, rivers with didymo show a lower amount of color-causing compounds, such as organic carbon, and clearer water, which supports the theory that high light levels encourage didymo growth. In addition to water chemistry, channel morphology, bed stability and flow patterns are also believed to be key elements in determining the presence of this benthic diatom. In 2007, channel morphology, bed texture, bankfull depth and width, local bed slope and didymo presence were surveyed on a 65 km stretch of the Matapedia River. Relative frequency of didymo presence showed that didymo blooms are most likely to appear in cobble-riffles than in any other morphologies. In fact, cobble riffles promote didymo establishment due to shallow waters which offer high solar radiation as well as stable riverbed. Both water chemistry and geomorphic factors appear to control Didymosphenia geminata spatial patterns and occurrence.

Taxon-specific responses of Southern Ocean diatoms to Fe enrichment revealed by synchrotron radiation FTIR microspectroscopy

NASA Astrophysics Data System (ADS)

Sackett, O.; Armand, L.; Beardall, J.; Hill, R.; Doblin, M.; Connelly, C.; Howes, J.; Stuart, B.; Ralph, P.; Heraud, P.

2014-05-01

Photosynthesis by marine diatoms contributes substantially to global biogeochemical cycling and ecosystem productivity. It is widely accepted that diatoms are extremely sensitive to changes in Fe availability, with numerous in situ experiments demonstrating rapid growth and increased export of elements (e.g. C, Si and Fe) from surface waters as a result of Fe addition. Less is known about the effects of Fe enrichment on the phenotypes of diatoms, such as associated changes in nutritional value, furthermore data on taxon-specific responses is almost non-existent. Enhanced supply of nutrient-rich waters along the coast of the subantarctic Kerguelen Island provide a valuable opportunity to examine the responses of phytoplankton to natural Fe enrichment. Here we demonstrate the use of synchrotron radiation Fourier Transform Infrared (SR-FTIR) microspectroscopy to analyse changes in the macromolecular composition of diatoms collected along the coast and plateau of Kerguelen Island, Southern Ocean. SR-FTIR microspectroscopy enabled the analysis of individual diatom cells from mixed communities of field-collected samples, thereby providing insight into in situ taxon-specific responses in relation to changes in Fe availability. Phenotypic responses were taxon-specific in terms of intraspecific variability and changes in proteins, amino acids, phosphorylated molecules, silicate and carbohydrates. In contrast to some previous studies, silicate levels increased under Fe enrichment, in conjunction with increases in carbohydrate stores. The highly abundant taxon Fragilariopsis kerguelensis displayed a higher level of phenotypic plasticity than Pseudo-nitzschia spp., while analysis of the data pooled across all measured taxa showed different patterns in macromolecular composition compared to those for individual taxon. This study demonstrates that taxon-specific responses to Fe enrichment may not always be accurately reflected by bulk community measurements, highlighting the need for further research into taxon-specific phenotypic responses of phytoplankton to environmental change.

Taxon-specific responses of Southern Ocean diatoms to Fe enrichment revealed by synchrotron radiation FTIR microspectroscopy

NASA Astrophysics Data System (ADS)

Sackett, O.; Armand, L.; Beardall, J.; Hill, R.; Doblin, M.; Connelly, C.; Howes, J.; Stuart, B.; Ralph, P.; Heraud, P.

2014-10-01

Photosynthesis by marine diatoms contributes substantially to global biogeochemical cycling and ecosystem productivity. It is widely accepted that diatoms are extremely sensitive to changes in Fe availability, with numerous in situ experiments demonstrating rapid growth and increased export of elements (e.g. C, Si and Fe) from surface waters as a result of Fe addition. Less is known about the effects of Fe enrichment on the phenotypes of diatoms, such as associated changes in nutritional value - furthermore, data on taxon-specific responses are almost non-existent. Enhanced supply of nutrient-rich waters along the coast of the subantarctic Kerguelen Island provide a valuable opportunity to examine the responses of phytoplankton to natural Fe enrichment. Here we demonstrate the use of synchrotron radiation Fourier Transform Infrared (SR-FTIR) microspectroscopy to analyse changes in the macromolecular composition of diatoms collected along the coast and plateau of Kerguelen Island, Southern Ocean. SR-FTIR microspectroscopy enabled the analysis of individual diatom cells from mixed communities of field-collected samples, thereby providing insight into in situ taxon-specific responses in relation to changes in Fe availability. Phenotypic responses were taxon-specific in terms of intraspecific variability and changes in proteins, amino acids, phosphorylated molecules, silicate/silicic acid and carbohydrates. In contrast to some previous studies, silicate/silicic acid levels increased under Fe enrichment, in conjunction with increases in carbohydrate stores. The highly abundant taxon Fragilariopsis kerguelensis displayed a higher level of phenotypic plasticity than Pseudo-nitzschia spp., while analysis of the data pooled across all measured taxa showed different patterns in macromolecular composition compared to those for individual taxon. This study demonstrates that taxon-specific responses to Fe enrichment may not always be accurately reflected by bulk community measurements, highlighting the need for further research into taxon-specific phenotypic responses of phytoplankton to environmental change.

Responses of aquatic organisms to metal pollution in a lowland river in Flanders: a comparison of diatoms and macroinvertebrates.

PubMed

De Jonge, Maarten; Van de Vijver, Bart; Blust, Ronny; Bervoets, Lieven

2008-12-15

The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and sediment. This study indicated that to assess the effect of metal pollution in lowland rivers, the combined use of macroinvertebrates and diatoms is more appropriate than the use of both biota separately.

Effects of Protection and Sediment Stress on Coral Reefs in Saint Lucia

PubMed Central

Bégin, Chantale; Schelten, Christiane K.; Nugues, Maggy M.; Hawkins, Julie; Roberts, Callum; Côté, Isabelle M.

2016-01-01

The extent to which Marine Protected Areas (MPAs) benefit corals is contentious. On one hand, MPAs could enhance coral growth and survival through increases in herbivory within their borders; on the other, they are unlikely to prevent disturbances, such as terrestrial runoff, that originate outside their boundaries. We examined the effect of spatial protection and terrestrial sediment on the benthic composition of coral reefs in Saint Lucia. In 2011 (10 to 16 years after MPAs were created), we resurveyed 21 reefs that had been surveyed in 2001 and analyzed current benthic assemblages as well as changes in benthic cover over that decade in relation to protection status, terrestrial sediment influence (measured as the proportion of terrigenous material in reef-associated sediment) and depth. The cover of all benthic biotic components has changed significantly over the decade, including a decline in coral and increase in macroalgae. Protection status was not a significant predictor of either current benthic composition or changes in composition, but current cover and change in cover of several components were related to terrigenous content of sediment deposited recently. Sites with a higher proportion of terrigenous sediment had lower current coral cover, higher macroalgal cover and greater coral declines. Our results suggest that terrestrial sediment is an important factor in the recent degradation of coral reefs in Saint Lucia and that the current MPA network should be complemented by measures to reduce runoff from land. PMID:26845451

Effects of Protection and Sediment Stress on Coral Reefs in Saint Lucia.

PubMed

Bégin, Chantale; Schelten, Christiane K; Nugues, Maggy M; Hawkins, Julie; Roberts, Callum; Côté, Isabelle M

2016-01-01

The extent to which Marine Protected Areas (MPAs) benefit corals is contentious. On one hand, MPAs could enhance coral growth and survival through increases in herbivory within their borders; on the other, they are unlikely to prevent disturbances, such as terrestrial runoff, that originate outside their boundaries. We examined the effect of spatial protection and terrestrial sediment on the benthic composition of coral reefs in Saint Lucia. In 2011 (10 to 16 years after MPAs were created), we resurveyed 21 reefs that had been surveyed in 2001 and analyzed current benthic assemblages as well as changes in benthic cover over that decade in relation to protection status, terrestrial sediment influence (measured as the proportion of terrigenous material in reef-associated sediment) and depth. The cover of all benthic biotic components has changed significantly over the decade, including a decline in coral and increase in macroalgae. Protection status was not a significant predictor of either current benthic composition or changes in composition, but current cover and change in cover of several components were related to terrigenous content of sediment deposited recently. Sites with a higher proportion of terrigenous sediment had lower current coral cover, higher macroalgal cover and greater coral declines. Our results suggest that terrestrial sediment is an important factor in the recent degradation of coral reefs in Saint Lucia and that the current MPA network should be complemented by measures to reduce runoff from land.

The Influence of Coral Reef Benthic Condition on Associated Fish Assemblages

PubMed Central

Chong-Seng, Karen M.; Mannering, Thomas D.; Pratchett, Morgan S.; Bellwood, David R.; Graham, Nicholas A. J.

2012-01-01

Accumulative disturbances can erode a coral reef’s resilience, often leading to replacement of scleractinian corals by macroalgae or other non-coral organisms. These degraded reef systems have been mostly described based on changes in the composition of the reef benthos, and there is little understanding of how such changes are influenced by, and in turn influence, other components of the reef ecosystem. This study investigated the spatial variation in benthic communities on fringing reefs around the inner Seychelles islands. Specifically, relationships between benthic composition and the underlying substrata, as well as the associated fish assemblages were assessed. High variability in benthic composition was found among reefs, with a gradient from high coral cover (up to 58%) and high structural complexity to high macroalgae cover (up to 95%) and low structural complexity at the extremes. This gradient was associated with declining species richness of fishes, reduced diversity of fish functional groups, and lower abundance of corallivorous fishes. There were no reciprocal increases in herbivorous fish abundances, and relationships with other fish functional groups and total fish abundance were weak. Reefs grouping at the extremes of complex coral habitats or low-complexity macroalgal habitats displayed markedly different fish communities, with only two species of benthic invertebrate feeding fishes in greater abundance in the macroalgal habitat. These results have negative implications for the continuation of many coral reef ecosystem processes and services if more reefs shift to extreme degraded conditions dominated by macroalgae. PMID:22870294

The influence of coral reef benthic condition on associated fish assemblages.

PubMed

Chong-Seng, Karen M; Mannering, Thomas D; Pratchett, Morgan S; Bellwood, David R; Graham, Nicholas A J

2012-01-01

Accumulative disturbances can erode a coral reef's resilience, often leading to replacement of scleractinian corals by macroalgae or other non-coral organisms. These degraded reef systems have been mostly described based on changes in the composition of the reef benthos, and there is little understanding of how such changes are influenced by, and in turn influence, other components of the reef ecosystem. This study investigated the spatial variation in benthic communities on fringing reefs around the inner Seychelles islands. Specifically, relationships between benthic composition and the underlying substrata, as well as the associated fish assemblages were assessed. High variability in benthic composition was found among reefs, with a gradient from high coral cover (up to 58%) and high structural complexity to high macroalgae cover (up to 95%) and low structural complexity at the extremes. This gradient was associated with declining species richness of fishes, reduced diversity of fish functional groups, and lower abundance of corallivorous fishes. There were no reciprocal increases in herbivorous fish abundances, and relationships with other fish functional groups and total fish abundance were weak. Reefs grouping at the extremes of complex coral habitats or low-complexity macroalgal habitats displayed markedly different fish communities, with only two species of benthic invertebrate feeding fishes in greater abundance in the macroalgal habitat. These results have negative implications for the continuation of many coral reef ecosystem processes and services if more reefs shift to extreme degraded conditions dominated by macroalgae.

Benthic Algal Community Structure and Bioaccumulation of Mercury in a Coastal Watershed

NASA Astrophysics Data System (ADS)

Novoveska, L.; Phipps, S. W.; Liu, P. P.; Pederson, C. L.

2005-05-01

Largemouth bass in the Fish River watershed of coastal Alabama contain relatively high concentrations of mercury, the source of which is unknown. We used benthic microalgal assemblages in effort to describe spatial distribution of mercury in the Fish River and its tributaries. Artificial substrates were deployed for 3-week exposure periods at 13 sites on 4 separate occasions. When analyzed by cold vapor atomic absorption spectroscopy, mercury concentrations in periphyton ranged from 0.066 μg/g (Pensacola Branch) to 0.493 μg/g (Barner Branch). Principal Components Analysis indicates that physical and chemical heterogeneity exists throughout the watershed and is correlated with agricultural and urban land use categories. Physical and chemical heterogeneity of stream sites, variability in land use/land cover, and mercury content of periphyton all are reflected in the diatom assemblages which were found to characterize each site. Gomphonema parvulum was cosmopolitan throughout the watershed and therefore deemed suitable for assessment of mercury contamination. However, mercury was not detected in G. parvulum when individual cells of from each site were observed using a Scannning Electron Microscope equipped with an Energy Dispersive X-ray Spectrometer.

Benthic macroinvertebrate surveys in Chequamegon Bay in support of invasive species early detection research

EPA Science Inventory

This presentation describes the impetus and approach for MED invasive species early detection research generally and presents preliminary results concerning benthic composition and non-native species found in the 2013 Chequamegon Bay survey. The audience is a group of researchers...

Six decades of change in pollution and benthic invertebrate biodiversity in a southern New England estuary

EPA Science Inventory

Pollution has led to a decline of benthic invertebrate biodiversity of Narragansett Bay, raising questions about effects on ecosystem functions and services including shellfish production, energy flow to fishes, and biogeochemical cycles. Changes in community composition and taxo...

Dissolved organic carbon concentration controls benthic primary production: results from in situ chambers in north-temperate lakes

USGS Publications Warehouse

Godwin, Sean C.; Jones, Stuart E.; Weidel, Brian C.; Solomon, Christopher T.

2014-01-01

We evaluated several potential drivers of primary production by benthic algae (periphyton) in north-temperate lakes. We used continuous dissolved oxygen measurements from in situ benthic chambers to quantify primary production by periphyton at multiple depths across 11 lakes encompassing a broad range of dissolved organic carbon (DOC) and total phosphorous (TP) concentrations. Light-use efficiency (primary production per unit incident light) was inversely related to average light availability (% of surface light) in 7 of the 11 study lakes, indicating that benthic algal assemblages exhibit photoadaptation, likely through physiological or compositional changes. DOC alone explained 86% of the variability in log-transformed whole-lake benthic production rates. TP was not an important driver of benthic production via its effects on nutrient and light availability. This result is contrary to studies in other systems, but may be common in relatively pristine north-temperate lakes. Our simple empirical model may allow for the prediction of whole-lake benthic primary production from easily obtained measurements of DOC concentration.

Ocean acidification changes the structure of an Antarctic coastal protistan community

NASA Astrophysics Data System (ADS)

Hancock, Alyce M.; Davidson, Andrew T.; McKinlay, John; McMinn, Andrew; Schulz, Kai G.; van den Enden, Rick L.

2018-04-01

Antarctic near-shore waters are amongst the most sensitive in the world to ocean acidification. Microbes occupying these waters are critical drivers of ecosystem productivity, elemental cycling and ocean biogeochemistry, yet little is known about their sensitivity to ocean acidification. A six-level, dose-response experiment was conducted using 650 L incubation tanks (minicosms) adjusted to a gradient in fugacity of carbon dioxide (fCO2) from 343 to 1641 µatm. The six minicosms were filled with near-shore water from Prydz Bay, East Antarctica, and the protistan composition and abundance was determined by microscopy during 18 days of incubation. No CO2-related change in the protistan community composition was observed during the initial 8 day acclimation period under low light. Thereafter, the response of both autotrophic and heterotrophic protists to fCO2 was species-specific. The response of diatoms was mainly cell size related; microplanktonic diatoms ( > 20 µm) increased in abundance with low to moderate fCO2 (343-634 µatm) but decreased at fCO2 ≥ 953 µatm. Similarly, the abundance of Phaeocystis antarctica increased with increasing fCO2 peaking at 634 µatm. Above this threshold the abundance of micro-sized diatoms and P. antarctica fell dramatically, and nanoplanktonic diatoms ( ≤ 20 µm) dominated, therefore culminating in a significant change in the protistan community composition. Comparisons of these results with previous experiments conducted at this site show that the fCO2 thresholds are similar, despite seasonal and interannual differences in the physical and biotic environment. This suggests that near-shore microbial communities are likely to change significantly near the end of this century if anthropogenic CO2 release continues unabated, with profound ramifications for near-shore Antarctic ecosystem food webs and biogeochemical cycling.

Effects of Bottom-up and Top-down Controls and Climate Change on Estuarine Macrophyte Communities and the Ecosystem Services they Provide

EPA Science Inventory

Macrophytes provide important estuarine benthic habitats and support a significant portion of estuarine productivity. The composition and characteristics of these benthic communities are regulated bottom-up by resource availability and from the top-down by herbivory and predation...

BIOGEOGRAPHY OF BENTHIC MACROINVERTEBRATES IN ESTUARIES ALONG THE GULF OF MEXICO AND WESTERN ATLANTIC COASTS

EPA Science Inventory

The community composition of benthic macroinvertebrates from 870 estuarine sites was examimed in order to either confirm or challenge established boundaries of biogeographical provinces along the Gulf of Mexico and western Atlantic coasts of the United States. The objective was t...

Static vs dynamic settlement and adhesion of diatoms to ship hull coatings.

PubMed

Zargiel, Kelli A; Swain, Geoffrey W

2014-01-01

Many experiments utilize static immersion tests to evaluate the performance of ship hull coatings. These provide valuable data; however, they do not accurately represent the conditions both the hull and fouling organisms encounter while a ship is underway. This study investigated the effect of static and dynamic immersion on the adhesion and settlement of diatoms to one antifouling coating (BRA 640), four fouling-release coatings (Intersleek(®) 700, Intersleek(®) 900, Hempasil X3, and Dow Corning 3140) and one standard surface (Intergard(®) 240 Epoxy). Differences in community composition were observed between the static and dynamic treatments. Achnanthes longipes was present on all coatings under static immersion, but was not present under dynamic immersion. This was also found for diatoms in the genera Bacillaria and Gyrosigma. Melosira moniformis was the only diatom present under dynamic conditions, but not static conditions. Several common fouling diatom genera were present on panels regardless of treatment: Amphora, Cocconeis, Entomoneis Cylindrotheca, Licmophora, Navicula, Nitzschia, Plagiotropis, and Synedra. Biofilm adhesion, diatom abundance and diatom diversity were found to be significantly different between static and dynamic treatments; however, the difference was dependent on coating and sampling date. Several coatings (Epoxy, DC 3140 and IS 700) had significantly higher biofilm adhesion on dynamically treated panels on at least one of the four sampling dates, while all coatings had significantly higher diatom abundance on at least one sampling date. Diversity was significantly greater on static panels than dynamic panels for Epoxy, IS 700 and HX3 at least once during the sampling period. The results demonstrate how hydrodynamic stress will significantly influence the microfouling community. Dynamic immersion testing is required to fully understand how antifouling surfaces will respond to biofilm formation when subjected to the stresses experienced by a ship underway.

Molecular tools for the selective detection of nine diatom species biomarkers of various water quality levels.

PubMed

Cimarelli, Lucia; Singh, Kumar Saurabh; Mai, Nguyen Thi Nhu; Dhar, Bidhan Chandra; Brandi, Anna; Brandi, Letizia; Spurio, Roberto

2015-05-22

Our understanding of the composition of diatom communities and their response to environmental changes is currently limited by laborious taxonomic identification procedures. Advances in molecular technologies are expected to contribute more efficient, robust and sensitive tools for the detection of these ecologically relevant microorganisms. There is a need to explore and test phylogenetic markers as an alternative to the use of rRNA genes, whose limited sequence divergence does not allow the accurate discrimination of diatoms at the species level. In this work, nine diatom species belonging to eight genera, isolated from epylithic environmental samples collected in central Italy, were chosen to implement a panel of diatoms covering the full range of ecological status of freshwaters. The procedure described in this work relies on the PCR amplification of specific regions in two conserved diatom genes, elongation factor 1-a (eEF1-a) and silicic acid transporter (SIT), as a first step to narrow down the complexity of the targets, followed by microarray hybridization experiments. Oligonucleotide probes with the potential to discriminate closely related species were designed taking into account the genetic polymorphisms found in target genes. These probes were tested, refined and validated on a small-scale prototype DNA chip. Overall, we obtained 17 highly specific probes targeting eEF1-a and SIT, along with 19 probes having lower discriminatory power recognizing at the same time two or three species. This basic array was validated in a laboratory setting and is ready for tests with crude environmental samples eventually to be scaled-up to include a larger panel of diatoms. Its possible use for the simultaneous detection of diatoms selected from the classes of water quality identified by the European Water Framework Directive is discussed.

The Effects of Climate Variability on Phytoplankton Composition in the Equatorial Pacific Ocean using a Model and a Satellite-Derived Approach

NASA Technical Reports Server (NTRS)

Rousseaux, C. S.; Gregg, W. W.

2012-01-01

Compared the interannual variation in diatoms, cyanobacteria, coccolithophores and chlorophytes from the NASA Ocean Biogeochemical Model with those derived from satellite data (Hirata et al. 2011) between 1998 and 2006 in the Equatorial Pacific. Using NOBM, La Ni a events were characterized by an increase in diatoms (correlation with MEI, r=-0.81, P<0.05), while cyanobacteria concentrations decreased significantly (r=0.61; P<0.05). El Nino produced the reverse pattern, with cyanobacteria populations increasing while diatoms plummeted. This represented a radical shift in the phytoplankton community in response to climate variability. However, satellite-derived phytoplankton groups were all negatively correlated with climate variability (r ranged from -0.39 for diatoms to -0.64 for coccolithophores, P<0.05). Spatially, the satellite-derived approach was closer to an independent in situ dataset for all phytoplankton groups except diatoms than NOBM. However, the different responses of phytoplankton to intense interannual events in the Equatorial Pacific raises questions about the representation of phytoplankton dynamics in models and algorithms: is a phytoplankton community shift as in the model or an across-the-board change in abundances of all phytoplankton as in the satellite-derived approach.

Identifying metabolic pathways for production of extracellular polymeric substances by the diatom Fragilariopsis cylindrus inhabiting sea ice.

PubMed

Aslam, Shazia N; Strauss, Jan; Thomas, David N; Mock, Thomas; Underwood, Graham J C

2018-05-01

Diatoms are significant primary producers in sea ice, an ephemeral habitat with steep vertical gradients of temperature and salinity characterizing the ice matrix environment. To cope with the variable and challenging conditions, sea ice diatoms produce polysaccharide-rich extracellular polymeric substances (EPS) that play important roles in adhesion, cell protection, ligand binding and as organic carbon sources. Significant differences in EPS concentrations and chemical composition corresponding to temperature and salinity gradients were present in sea ice from the Weddell Sea and Eastern Antarctic regions of the Southern Ocean. To reconstruct the first metabolic pathway for EPS production in diatoms, we exposed Fragilariopsis cylindrus, a key bi-polar diatom species, to simulated sea ice formation. Transcriptome profiling under varying conditions of EPS production identified a significant number of genes and divergent alleles. Their complex differential expression patterns under simulated sea ice formation was aligned with physiological and biochemical properties of the cells, and with field measurements of sea ice EPS characteristics. Thus, the molecular complexity of the EPS pathway suggests metabolic plasticity in F. cylindrus is required to cope with the challenging conditions of the highly variable and extreme sea ice habitat.

Chemotaxonomic phytoplankton patterns on the eastern boundary of the Atlantic Ocean

NASA Astrophysics Data System (ADS)

Barlow, R.; Gibberd, M.-J.; Lamont, T.; Aiken, J.; Holligan, P.

2016-05-01

Surface pigment data from a transect along the eastern boundary of the Atlantic Ocean was analysed using CHEMTAX to yield more detailed information on the composition of phytoplankton communities. Total chlorophyll a concentrations varied from 0.03 mg m-3 in a northern oligotrophic region to 30.3 mg m-3 in the Benguela ecosystem. Diatoms dominated the Benguela, while both diatoms and haptophytes were the major groups in the Canary ecosystem and the temperate NE Atlantic. Prochlorococcus was the most prominent group in the southern oligotrophic region (15.5°S-15°N) although haptophytes were also a significant component of the population. In contrast, haptophytes dominated the northern oligotrophic region (21°-40°N). Photo-pigment indices indicated that chlorophyll b was mainly associated with prasinophytes and chlorophyll c with diatoms. Elevated photosynthetic carotenoids were due to increased proportions of haptophytes, but also linked with diatoms and dinoflagellates. Photoprotective carotenoids were more prominently associated with Prochlorococcus and to a lesser extent to Synechococcus.

Photo-Oxidative Stress-Driven Mutagenesis and Adaptive Evolution on the Marine Diatom Phaeodactylum tricornutum for Enhanced Carotenoid Accumulation.

PubMed

Yi, Zhiqian; Xu, Maonian; Magnusdottir, Manuela; Zhang, Yuetuan; Brynjolfsson, Sigurdur; Fu, Weiqi

2015-09-29

Marine diatoms have recently gained much attention as they are expected to be a promising resource for sustainable production of bioactive compounds such as carotenoids and biofuels as a future clean energy solution. To develop photosynthetic cell factories, it is important to improve diatoms for value-added products. In this study, we utilized UVC radiation to induce mutations in the marine diatom Phaeodactylum tricornutum and screened strains with enhanced accumulation of neutral lipids and carotenoids. Adaptive laboratory evolution (ALE) was also used in parallel to develop altered phenotypic and biological functions in P. tricornutum and it was reported for the first time that ALE was successfully applied on diatoms for the enhancement of growth performance and productivity of value-added carotenoids to date. Liquid chromatography-mass spectrometry (LC-MS) was utilized to study the composition of major pigments in the wild type P. tricornutum, UV mutants and ALE strains. UVC radiated strains exhibited higher accumulation of fucoxanthin as well as neutral lipids compared to their wild type counterpart. In addition to UV mutagenesis, P. tricornutum strains developed by ALE also yielded enhanced biomass production and fucoxanthin accumulation under combined red and blue light. In short, both UV mutagenesis and ALE appeared as an effective approach to developing desired phenotypes in the marine diatoms via electromagnetic radiation-induced oxidative stress.

Photo-Oxidative Stress-Driven Mutagenesis and Adaptive Evolution on the Marine Diatom Phaeodactylum tricornutum for Enhanced Carotenoid Accumulation

PubMed Central

Yi, Zhiqian; Xu, Maonian; Magnusdottir, Manuela; Zhang, Yuetuan; Brynjolfsson, Sigurdur; Fu, Weiqi

2015-01-01

Marine diatoms have recently gained much attention as they are expected to be a promising resource for sustainable production of bioactive compounds such as carotenoids and biofuels as a future clean energy solution. To develop photosynthetic cell factories, it is important to improve diatoms for value-added products. In this study, we utilized UVC radiation to induce mutations in the marine diatom Phaeodactylum tricornutum and screened strains with enhanced accumulation of neutral lipids and carotenoids. Adaptive laboratory evolution (ALE) was also used in parallel to develop altered phenotypic and biological functions in P. tricornutum and it was reported for the first time that ALE was successfully applied on diatoms for the enhancement of growth performance and productivity of value-added carotenoids to date. Liquid chromatography-mass spectrometry (LC-MS) was utilized to study the composition of major pigments in the wild type P. tricornutum, UV mutants and ALE strains. UVC radiated strains exhibited higher accumulation of fucoxanthin as well as neutral lipids compared to their wild type counterpart. In addition to UV mutagenesis, P. tricornutum strains developed by ALE also yielded enhanced biomass production and fucoxanthin accumulation under combined red and blue light. In short, both UV mutagenesis and ALE appeared as an effective approach to developing desired phenotypes in the marine diatoms via electromagnetic radiation-induced oxidative stress. PMID:26426027

Optical characterization of an eddy-induced diatom bloom west of the island of Hawaii

NASA Astrophysics Data System (ADS)

Nencioli, F.; Chang, G.; Twardowski, M.; Dickey, T. D.

2009-08-01

Optical properties are used to characterize the biogeochemistry of cyclonic eddy Opal in the lee of Hawaii. The eddy featured an intense diatom bloom. Our results show that the ratio of chlorophyll concentration to particulate beam attenuation coefficient, [chl]/cp, is not a good indicator of the changes in particle composition through the water column. The ratio is controlled primarily by the variation in chlorophyll concentration per cell with depth (photoadaptation), so that its values increase throughout the Deep Chlorophyll Maximum Layer (DCML). Below the DCML, high values of [chl]/cp suggest that remineralization might be another important controlling factor. On the other hand, the backscattering ratio (particle backscattering to particle scattering ratio, b~bp) clearly indicates a shift from a small phytoplankton to a diatom dominated community. Below an upper layer characterized by constant values, the b~bp ratio showed a rapid decrease to a broad minimum within the DCML. The higher values below the DCML are consistent with enhanced remineralization below the eddy-induced bloom. The DCML was characterized by a layer of "healthy" diatoms underlying a layer of "senescent" diatoms. These two layers are characterized by similar optical properties, indicating some possible limitations in using optical measurements to fully characterize the composition of suspended material in the water column. An inverse relationship between b~bp and [chl]/cp, also reported by others, is observed as deep as the DCML. There, [chl]/cp increases whereas b~bp remains similar to values found in the empty frustule layer. This is a further indication that [chl]/cp might not be a good alternative to the backscattering ratio for investigating changes in particle composition with depth in Case I waters.