Small bugs with big impacts: Ecosystem and watershed-level responses to the MPB epidemic [Chapter 7

Treesearch

Rob Hubbard; Kelly Elder; Chuck Rhoades; Polly Hays; Bruce Sims

2014-01-01

Mountain pine beetle (MPB) outbreaks have the potential for prolonged impacts on the delivery of clean water from infested subalpine watersheds throughout the West. Sixty-five percent of the West’s water supply originates on forested land (Brown and others 2008), much of which has been affected by an unprecedented MPB epidemic over the past decade. Some lodgepole pine...

Watershed management in the central and southern Rocky Mountains: A summary of the status of our knowledge by vegetation types

Treesearch

Charles F. Leaf

1975-01-01

Summarizes a series of comprehensive reports on watershed management in five major vegetation zones: (1) the coniferous forest subalpine zone; (2) the Front Range ponderosa pine zone; (3) the Black Hills ponderosa pine zone; (4) the alpine zone; and (5) the big sagebrush zone. Includes what is known about the hydrology of these lands, what hydrologic principles are...

The Seeley Lake larch: Living link to indian and frontier history

Treesearch

Stephen F. Arno

2010-01-01

Western Montana’s Big Blackfoot River was once the gateway to a magnificent forest and the conduit that fed an immense sawmill. Epic log drives once choked the waterway full of timber each spring. The Big Blackfoot drainage was known for its majestic, centuries-old ponderosa pine and western larch trees. Although stately old ponderosas were widely distributed across...

Programmatic Environmental Assessment for Standard Targetry Replacement

DTIC Science & Technology

2006-04-01

Appalachian oak and pine-oak stands. Pine barrens with grassy savannas are found in dry sandy soils, with thick shrubs often growing beneath the... fir . In interior valleys, the coniferous forest is less dense than along the coast; and often contains deciduous trees, such as big-leaf maple...Oregon ash, and black cottonwood. There are prairies that support open stands of oaks, or are broken by groves of Douglas fir and other trees

Seasonality and Disturbance Events in the Carbon Isotope Record of Pinus elliottii Tree Rings from Big Pine Key, Florida

NASA Astrophysics Data System (ADS)

Rebenack, C.; Anderson, W. T.; Cherubini, P.

2012-12-01

The South Florida coastal ecosystem is among the world's subtropical coastlines which are threatened by the potential effects of climate change. A well-developed localized paleohistory is essential in the understanding of the role climate variability/change has on both hydrological dynamics and disturbance event frequency and intensity; this understanding can then aid in the development of better predictive models. High resolution paleoclimate proxies, such as those developed from tree-ring archives, may be useful tools for extrapolating actual climate trends over time from the overlapping long-term and short-term climate cycles, such as the Atlantic Multidecadal Oscillation (AMO) and the El Niño-Southern Oscillation (ENSO). In South Florida, both the AMO and ENSO strongly influence seasonal precipitation, and a more complete grasp of how these cycles have affected the region in the past could be applied to future freshwater management practices. Dendrochronology records for the terrestrial subtropics, including South Florida, are sparse because seasonality for this region is precipitation-driven; this is in contrast to the drastic temperature changes experienced in the temperate latitudes. Subtropical seasonality may lead to the complete lack of visible rings or to the formation of ring structures that may or may not represent annual growth. Fortunately, it has recently been demonstrated that Pinus elliottii trees in South Florida produce distinct annual growth rings; however ring width was not found to significantly correlate with either the AMO or ENSO. Dendrochronology studies may be taken a step beyond the physical tree-ring proxies by using the carbon isotope ratios to infer information about physiological controls and environmental factors that affect the distribution of isotopes within the plant. It has been well established that the stable isotope composition of cellulose can be related to precipitation, drought, large-scale ocean/atmospheric oscillations, and disturbance events, such as tropical cyclone impacts. Because slash pine growth is dependent on water availability, a chronology developed using carbon isotopes may provide greater insight into plant stress over time and ultimately may lead to better correlations with climate oscillations. The work presented here is the result of a carbon-isotope study of four slash pine trees located across a freshwater gradient on Big Pine Key, Florida. A site chronology has been developed by cross-dating the δ13C records for each of the trees. The tree located on the distal edge of the freshwater gradient shows an overall enriched isotopic signature over time compared to the trees growing over a deeper part of the local freshwater lens, indicating that these trees are sensitive to water stress. In addition, the carbon isotope data show seasonal stomatal activity in the trees and indicate the timing of two disturbance events.

Seeds in Flight

ERIC Educational Resources Information Center

Martin, Willard K.

1978-01-01

Discussed are the seed dispersal mechanisms of six different plants: big-leaf maple, pincushion tree, tree of heaven, squirting cucumber, digger pine, and bull thistle. Elaborate color and black-and-white drawings illustrate the text. (MA)

Late Pleistocene ages for the most recent volcanism and glacial-pluvial deposits at Big Pine volcanic field, California, USA, from cosmogenic 36Cl dating

USGS Publications Warehouse

Vazquez, Jorge A.; Woolford, Jeff M

2015-01-01

The Big Pine volcanic field is one of several Quaternary volcanic fields that poses a potential volcanic hazard along the tectonically active Owens Valley of east-central California, and whose lavas are interbedded with deposits from Pleistocene glaciations in the Sierra Nevada Range. Previous geochronology indicates an ∼1.2 Ma history of volcanism, but the eruption ages and distribution of volcanic products associated with the most-recent eruptions have been poorly resolved. To delimit the timing and products of the youngest volcanism, we combine field mapping and cosmogenic 36Cl dating of basaltic lava flows in the area where lavas with youthful morphology and well-preserved flow structures are concentrated. Field mapping and petrology reveal approximately 15 vents and 6 principal flow units with variable geochemical composition and mineralogy. Cosmogenic 36Cl exposure ages for lava flow units from the top, middle, and bottom of the volcanic stratigraphy indicate eruptions at ∼17, 27, and 40 ka, revealing several different and previously unrecognized episodes of late Pleistocene volcanism. Olivine to plagioclase-pyroxene phyric basalt erupted from several vents during the most recent episode of volcanism at ∼17 ka, and produced a lava flow field covering ∼35 km2. The late Pleistocene 36Cl exposure ages indicate that moraine and pluvial shoreline deposits that overlie or modify the youngest Big Pine lavas reflect Tioga stage glaciation in the Sierra Nevada and the shore of paleo-Owens Lake during the last glacial cycle.

Cronartium ribicola resistance in whitebark pine, southwestern white pine, limber pine and Rocky Mountain bristlecone pine - preliminary screening results from first tests at Dorena GRC

Treesearch

Richard A. Sniezko; Angelia Kegley; Robert Danchok; Anna W. Schoettle; Kelly S. Burns; Dave Conklin

2008-01-01

All nine species of white pines (five-needle pines) native to the United States are highly susceptible to Cronartium ribicola, the fungus causing white pine blister rust. The presence of genetic resistance will be the key to maintaining or restoring white pines in many ecosystems and planning gene conservation activities. Operational genetic...

The vertebrate fauna of Ichauway, Baker County, GA

USGS Publications Warehouse

Smith, L.L.; Steen, D.A.; Stober, J.M.; Freeman, Mary C.; Golladay, S.W.; Conner, L.M.; Cochrane, J.

2006-01-01

Less than 4% of the once extensive Pinus palustris (longleaf pine) ecosystem remains today. Although longleaf pine habitats are recognized for their high species diversity, few published accounts document the vertebrate faunas of remaining tracts. Here we report on the vertebrate species richness of lchauway, an 11,300-ha property in Baker County, GA. The property includes ca. 7300 ha of longleaf pine with native ground cover, along with more than 30 seasonal wetlands and ca. 45 km of riparian habitat associated with Ichawaynochaway Creek, Big Cypress Creek, and the Flint River. The fauna includes 61 species of fish, 31 amphibians, 53 reptiles, 191 birds, and 41 mammals. Despite the relative isolation of the property from other natural ecosystems, the vertebrate fauna of lchauway is remarkably diverse and may offer an example of reference conditions to guide restoration of longleaf pine forests, associated seasonal wetlands, and riparian areas elsewhere in the southeastern U S.

Effects of triclosan on bacterial community composition and ...

EPA Pesticide Factsheets

Pharmaceuticals and personal care products, including antimicrobials, can be found at trace levels in treated wastewater effluent. Impacts of chemical contaminants on coastal aquatic microbial community structure and pathogen abundance are unknown despite the potential for selection through antimicrobial resistance. In particular, Vibrio, a marine bacterial genus that includes several human pathogens, displays resistance to the ubiquitous antimicrobial compound triclosan. Here we demonstrated through use of natural seawater microcosms that triclosan (at a concentration of ~5 ppm) can induce a significant Vibrio growth response (68–1,700 fold increases) in comparison with no treatment controls for three distinct coastal ecosystems: Looe Key Reef (Florida Keys National Marine Sanctuary), Doctors Arm Canal (Big Pine Key, FL), and Clam Bank Landing (North Inlet Estuary, Georgetown, SC). Additionally, microbial community analysis by 16 S rRNA gene sequencing for Looe Key Reef showed distinct changes in microbial community structure with exposure to 5 ppm triclosan, with increases observed in the relative abundance of Vibrionaceae (17-fold), Pseudoalteromonadaceae (65-fold), Alteromonadaceae (108-fold), Colwelliaceae (430-fold), and Oceanospirillaceae (1,494-fold). While the triclosan doses tested were above concentrations typically observed in coastal surface waters, results identify bacterial families that are potentially resistant to triclosan and/or adapted to u

77 FR 25739 - Notice of Inventory Completion: Fowler Museum at UCLA, Los Angeles, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-01

... additional claimants come forward. DATES: Representatives of any Indian tribe that believes it has a cultural... claimants come forward. The Fowler Museum at UCLA is responsible for notifying the Big Pine Band of Owens...

Manitoba

Atmospheric Science Data Center

2013-04-17

... black spruce, jack pine, tamarack, willow, and birch. Human population density is sparse, averaging about 1 person per 10 square ... Big Sand Lake, above image center, was reported to be under control on June 20, whereas the plume at lower left, to the west of Gold Sand ...

Home Range and Habitat Use of Male Rafinesque's Big-Eared Bats (Corynorhinus rafinesquii)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menzel, M.A.; Menzel, J.M.; Ford, W.M.

We examined home range size and habitat use of four reproductively active male Rafinesque Big-eared bats in the upper Coastal Plain of South Carolina during August and September of 1999. Most foraging activity occurred during the first 4 hours after sunset and the first two hours before sunrise. Mean home range size was 93.1 hectares. Most foraging activity occurred in young pines even though large tracks of bottomland hardwood were available. Only 9% of foraging occurred in bottomland hardwoods.

Developing ecological criteria for prescribed fire in South Florida pine rockland ecosystems

USGS Publications Warehouse

Snyder, James R.; Ross, Michael S.; Koptur, Suzanne; Sah, Jay P.

2005-01-01

The pine rocklands of South Florida, characterized by a rich herbaceous flora with many narrowly endemic taxa beneath an overstory of south Florida slash pine (Pinus elliottii var. densa), are found in three areas: the Miami Rock Ridge of southeastern peninsular Florida, the Lower Florida Keys, and slightly elevated portions of the southern Big Cypress National Preserve. Fire is an important element in these ecosystems, since in its absence the pine canopy is likely to be replaced by dense hardwoods, resulting in loss of the characteristic pineland herb flora. Prescribed fire has been used in Florida Keys pine forests since the creation of the National Key Deer Refuge (NKDR), with the primary aim of reducing fuels. Because fire can also be an effective tool in shaping ecological communities, we conducted a 4-year research study which explored a range of fire management options in NKDR. The intent of the study was to provide the Fish and Wildlife Service and other land managers with information regarding when and where to burn in order to perpetuate these unique forests. In 1998 we initiated a burning experiment in a randomized complete block design. Three treatments were to be carried out in a single well-defined block in each of two characteristic understory types during each year from 1998 through 2000. One understory type was characterized by a relatively sparse shrub layer and a well-developed herb layer ('open'), and the second had a dense shrub layer and poorly developed herb layer ('shrubby'). The three burn treatments were: (a) summer burn, (b) winter burn, and (c) no burn, or control. Three 1- ha plots were established in each block, and randomly assigned to the three treatments. Though the first year experimental burns were carried out without incident, constraints posed by external factors, including nationwide and statewide prohibitions on prescribed burning due to wildfires in other regions, delayed the experimental burns and precluded collection of postburn data on one third of the burns. Ultimately we burned only eleven plots, three in winter and eight in summer, over a four-year period from 1998 to 2001. Vegetation was sampled in a stratified, nested design within 18 plots. Trees were sampled in a 1.0-ha plot, shrubs in twenty 50-m2 circular (radius 4 m) subplots within the tree plot, and the herb layer in four circular 1-m2 quadrats (radius 0.57 m) within each subplot. The amount of fuel in the shrub layer was estimated by applying regression models to plant dimensional data, and ground layer fuel was estimated by a harvest method. The effects of Key deer herbivory on regeneration of the understory pine rockland plant community after fire was studied by monitoring inside and outside exclosures established within two of the six blocks. Pine trees constituted more than half (53.3%) of the biomass, but understory fine fuels comprised a surprisingly high proportion of total aboveground biomass. In the three blocks in which paired summer and winter burns were successfully conducted, the summer burns were more intense than the winter burns as judged by our indicators of fire intensity. Because of the differences in fire intensity between seasons, it was not possible to say whether observed differences in vegetation response between summer and winter burns were due to season or to fire intensity. The mortality of South Florida slash pine trees was greater after the summer burn than the winter burn in each block, but other vegetation responses were rarely as consistent. For instance, Metopium showed less recovery after summer burns in two blocks and after the winter burn in the third block. Moreover, there were instances in which alternative growth stages of the same species responded differently. Adult palms succumbed more frequently to summer than winter burns, and mortality of Coccothrinax exceeded that of Thrinax. In contrast, small palms recovered more readily after summer burns than winter burns. High in

Improvement of non-key traits in radiata pine breeding programme when long-term economic importance is uncertain.

PubMed

Li, Yongjun; Dungey, Heidi; Yanchuk, Alvin; Apiolaza, Luis A

2017-01-01

Diameter at breast height (DBH), wood density (DEN) and predicted modulus of elasticity (PME) are considered as 'key traits' (KT) in the improvement in radiata pine breeding programmes in New Zealand. Any other traits which are also of interest to radiata pine breeders and forest growers are called 'non-key traits' (NKTs). External resin bleeding (ERB), internal checking (IC), number of heartwood rings (NHR) are three such non-key traits which affect wood quality of radiata pine timber. Economic importance of the KTs and NKTs is hard to define in radiata pine breeding programmes due to long rotation period. Desired-gain index (DGIs) and robust selection were proposed to incorporate NKTs into radiata pine breeding programme in order to deal with the uncertainty of economic importance. Four desired-gain indices A-D were proposed in this study. The desired-gain index A (DGI-A) emphasized growth and led to small decrease in ERB and small increase in IC and NHR. The expected genetic gains of all traits in the desired-gain index B (DGI-B) were in the favourable directions (positive genetic gains in the key traits and negative genetic gains in the non-key traits). The desired-gain index C (DGI-C) placed emphasis on wood density, leading to favourable genetic gain in the NKTs but reduced genetic gains for DBH and PME. The desired-gain index D (DGI-D) exerted a bit more emphasis on the non-key traits, leading large favourable reduction in the non-key traits and lower increase in the key traits compared with the other DGIs. When selecting both the key traits and the non-key traits, the average EBVs of six traits were all in the same directions as the expected genetic gains except for DBH in the DGI-D. When the key traits were measured and selected, internal checking always had a negative (favourable) genetic gain but ERB and NHR had unfavourable genetic gain in the most of time. After removing some individuals with high sensitivity to the change of economic weights, robust desired-gain selection made genetic gains of all the key and non-key traits to move a little bit toward unfavourable directions in the four indices. It is concluded that desired-gain index combined with robust selection concept is an efficient way for selecting the key and non-key traits in radiata pine breeding programmes.

The shaping-lathe headrig-- key to utilization of hardwoods growing on southern pine sites

Treesearch

P. Koch

1974-01-01

For every cubic foot of pine on southern pine sites, there is about 0.8 cubic foot of hardwood. The shaping-lathe headrig, now in the final stages of commercialization, is a key to utilizing these small mixed hardwoods for pallets and industrial lumber. Lathe residues in the form of flakes can be the raw material for a new major industry manufacturing exterior...

Key to utilization of hardwoods on pine sites: the shaping-lathe headrig

Treesearch

P. Koch

1976-01-01

In past years, only 30% of southern pine biomass (above- and below-ground parts) ended as primary product. Moreover, hardwoods on pine sites were, and in many cases still are, destroyed with no thought of utilization. Now, however, processes have been invented that can raise utilization of each tree- pine and hardwood on pine sites a like to 67% of total biomass,...

New tree nut allergens

USDA-ARS?s Scientific Manuscript database

The 7S vicilin and 11S legumin seed storage globulins belong to the cupin protein superfamily and are major food allergens in many of the “big eight” food allergen groups. Korean pine vicilin and pecan vicilin are thus predicted to be food allergens. Recombinant vicilins were expressed in E. coli an...

Longleaf pine can catch up

Treesearch

William D. Boyer

1997-01-01

One of the principal southern pines, longleaf (Pinus palustris Mill.) is the key tree species in a fire-dependent ecosystem. In pm-settlement times, longleaf pine forests covered much of the southeastern United States.Once the most extensive forest ecosystem in North America dominated by a single species longleaf pine now occupies only about 3...

Cost Effectiveness of Natural Regeneration for Sustaining Production Continuity in Commercial Pine Plantations

Treesearch

T.R. Clason

2002-01-01

Reforestation is a key to production continuity in commercial pine plantations. Although natural and artificial regeneration methods have been used successfully for pine seedling establishment, it is seedling growth during early stage of plantation development that affects the financial potential of a pine plantation. A study was initiated to determine the effect of...

Natural regeneration in the western white pine type

Treesearch

Irvine T. Haig; Kenneth P. Davis; Robert H. Weidman

1941-01-01

The purpose of this bulletin is to bring together the available information on natural regeneration of the western white pine type, based on about 25 years of forest research and 30 years of national-forest timber-cutting experience. Western white pine (Pinus monticola) forms the key species of the valuable western white pine type of northern Idaho and contiguous...

Southern pine beetle in loblolly pine: simulating within stand interactions using the process model SPBLOBTHIN

Treesearch

Brian Strom; J. R. Meeker; J. Bishir; James Roberds; X. Wan

2016-01-01

Pine stand density is a key determinant of damage resulting from attacks by the southern pine beetle (SPB, Dendroctonus frontalis Zimm.). High-density stands of maturing loblolly pine (Pinus taeda L.) are at high risk for losses to SPB, and reducing stand density is the primary tool available to forest managers for preventing and mitigating damage. Field studies are...

Roger Lake research natural area: guidebook supplement 29.

Treesearch

J. Dana Visalli

2006-01-01

Roger Lake Research Natural Area (RNA), a 174.7-ha reserve in north-central Washington, contains a rich diversity of landforms, plant communities, and wildlife habitats. Spreading outward from the lake itself, sedge and sphagnum fens give way to upland coniferous forest, granitic cliffs, and a relictual, high-altitude big sagebrush-whitebark pine (Artemisia tridentata-...

Soil microbial community structure and diversity are largely influenced by soil pH and nutrient quality in 78-year-old tree plantations

NASA Astrophysics Data System (ADS)

Zhou, Xiaoqi; Guo, Zhiying; Chen, Chengrong; Jia, Zhongjun

2017-04-01

Forest plantations have been recognised as a key strategy management tool for stocking carbon (C) in soils, thereby contributing to climate warming mitigation. However, long-term ecological consequences of anthropogenic forest plantations on the community structure and diversity of soil microorganisms and the underlying mechanisms in determining these patterns are poorly understood. In this study, we selected 78-year-old tree plantations that included three coniferous tree species (i.e. slash pine, hoop pine and kauri pine) and a eucalypt species in subtropical Australia. We investigated the patterns of community structure, and the diversity of soil bacteria and eukaryotes by using high-throughput sequencing of 16S rRNA and 18S rRNA genes. We also measured the potential methane oxidation capacity under different tree species. The results showed that slash pine and Eucalyptus significantly increased the dominant taxa of bacterial Acidobacteria and the dominant taxa of eukaryotic Ascomycota, and formed clusters of soil bacterial and eukaryotic communities, which were clearly different from the clusters under hoop pine and kauri pine. Soil pH and nutrient quality indicators such as C : nitrogen (N) and extractable organic C : extractable organic N were key factors in determining the patterns of soil bacterial and eukaryotic communities between the different tree species treatments. Slash pine and Eucalyptus had significantly lower soil bacterial and eukaryotic operational taxonomical unit numbers and lower diversity indices than kauri pine and hoop pine. A key factor limitation hypothesis was introduced, which gives a reasonable explanation for lower diversity indices under slash pine and Eucalyptus. In addition, slash pine and Eucalyptus had a higher soil methane oxidation capacity than the other tree species. These results suggest that significant changes in soil microbial communities may occur in response to chronic disturbance by tree plantations, and highlight the importance of soil pH and physiochemical characteristics in microbially mediated ecological processes in forested soils.

Some climatological factors of pine in the lake toba catchment area

NASA Astrophysics Data System (ADS)

Nasution, Z.

2018-02-01

The article deals with climatological factors of Pine at the Lake Toba Catchment Area also called drained basin, Pinus merkusii is a plant endemic in Sumatra. A central population of Pine in North Sumatra is located in the Tapanuli region to south of Lake Toba. Junghuhn discovered the species in the mountains range of Sipirok. He provisionally named the species as Pinus sumatrana. The article presents a detail analysis of approaches to climate factors, considers rainfall, air temperature, humidity, stemflow, throughfall and Interception following calculation of regression to determine relationship between precipitation with stemflow and interception. Stemflow, it is highly significant with significance of difference between correlation coefficients and z normal distribution. Temperature and relative humidity are the important components in the climate. These components influence the evaporation process and rainfall in the catchment. Pinus merkusii has the big crown interception. Stemflow and Interception has an opposite relation. Increasing of interception capacity will decrease stemflow. This type of Pine also has rough bark however significant channels so that, it flows water even during the wet season and caused the stemflow in Pinus merkusii relatively bigger.

Anticipating Good Longleaf Pine Cone Crops: The Key to Successful Natural Regeneration

Treesearch

William D. Boyer

1997-01-01

Unlike other southern pines, or most intolerant pioneer species, longleaf pine is a poor seed producer. Cone crops are highly variable from year to-year, and also from place to place in the same year. Crops large enough to assure adequate regeneration are few and far between, especially in the longleaf pine belt of the southern Coastal Plains. Not only is this species...

Key Mites Commonly Associated With the Southern Pine Beetle

Treesearch

D.N. Kinn

1976-01-01

This paper outlines a method of preparing mites for microscopic examination and contains a simple key to the 15 species of mites commonly associated with the southern pine bark beetle. Research workers wanting to identify these mites and others curious about them, but untrained in acarology, should find little difficulty in making identifications.

An overview of key silvicultural information for ponderosa pine

Treesearch

John Fiske; John Tappeiner

2005-01-01

This paper provides a selected list of classical references for the important silvicultural findings for ponderosa pine, and categorizes some of the key current literature, as well as some of the older, lesser known but important literature. The paper also provides some history of scientific developments, and sources of further information.

47 CFR 101.31 - Temporary and conditional authorizations.

Code of Federal Regulations, 2010 CFR

2010-10-01

..., such as the continental United States. Sufficient data must be submitted to show the need for the... Dimensions=radius in kilometers Center-point Kitt Peak, Arizona 60 N31-57-22; W111-36-42 Big Pine, California... 160 N38-25-59; W79-50-24 Note: Coordinates are referenced to North American Datum 1983 (NAD83). (vii...

47 CFR 101.31 - Temporary and conditional authorizations.

Code of Federal Regulations, 2013 CFR

2013-10-01

..., such as the continental United States. Sufficient data must be submitted to show the need for the... region Dimensions=radius in kilometers Center-point Kitt Peak, Arizona 60 N31-57-22; W111-36-42 Big Pine..., West Virginia 160 N38-25-59; W79-50-24 Note: Coordinates are referenced to North American Datum 1983...

47 CFR 101.31 - Temporary and conditional authorizations.

Code of Federal Regulations, 2012 CFR

2012-10-01

..., such as the continental United States. Sufficient data must be submitted to show the need for the... region Dimensions=radius in kilometers Center-point Kitt Peak, Arizona 60 N31-57-22; W111-36-42 Big Pine..., West Virginia 160 N38-25-59; W79-50-24 Note: Coordinates are referenced to North American Datum 1983...

47 CFR 101.31 - Temporary and conditional authorizations.

Code of Federal Regulations, 2014 CFR

2014-10-01

..., such as the continental United States. Sufficient data must be submitted to show the need for the... region Dimensions=radius in kilometers Center-point Kitt Peak, Arizona 60 N31-57-22; W111-36-42 Big Pine..., West Virginia 160 N38-25-59; W79-50-24 Note: Coordinates are referenced to North American Datum 1983...

76 FR 80398 - Notice of Inventory Completion: Minnesota Indian Affairs Council, Bemidji, MN

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-23

.... The human remains were purportedly reburied, except for the skull fragments, which were donated to the owner of a local bar. After the death of the bar owner, the reconstructed skull was reburied near Big Pine Lake. In 2009, the same skull was recovered during power line construction on residential property...

Forecasts of forest conditions

Treesearch

Robert Huggett; David N. Wear; Ruhong Li; John Coulston; Shan Liu

2013-01-01

Key FindingsAmong the five forest management types, only planted pine is expected to increase in area. In 2010 planted pine comprised 19 percent of southern forests. By 2060, planted pine is forecasted to comprise somewhere between 24 and 36 percent of forest area.Although predicted rates of change vary, all forecasts reveal...

Managing Gambel oak in southwestern ponderosa pine forests: the status of our knowledge

Treesearch

Scott R. Abella

2008-01-01

Gambel oak (Quercus gambelii) is a key deciduous species in southwestern ponderosa pine (Pinus ponderosa) forests and is important for wildlife habitat, soil processes, and human values. This report (1) summarizes Gambel oak's biological characteristics and importance in ponderosa pine forests, (2) synthesizes literature on...

A Loblolly Pine Management Guide: Natural Regeneration of Loblolly Pine

Treesearch

M. Boyd Edwards

1987-01-01

For many landowners, low cost makes natural regeneration an attractive alternative to planting when loblolly pine stands are harvested. Clearcutting, seed-tree, shelterwood, and selection methods can be used. Keys to success are a suitable seedbed.an adequate seed supply, sufficient moisture. and freedom from excessive competition.

Modeling cold tolerance in the mountain pine beetle, Dendroctonus ponderosae

Treesearch

Jacques Regniere; Barbara Bentz

2007-01-01

Cold-induced mortality is a key factor driving mountain pine beetle, Dendroctonus ponderosae, population dynamics. In this species, the supercooling point (SCP) is representative of mortality induced by acute cold exposure. Mountain pine beetle SCP and associated cold-induced mortality fluctuate throughout a generation, with the highest SCPs prior to and following...

Patterns of Seed Productions in Table Mountain Pine

Treesearch

Ellen A. Gray; John C. Rennie; Thomas A. Waldrop; James L. Hanula

2002-01-01

The lack of regeneration in stands of Table Mountain pine (Pinus pungens Lamb.) in the Southern Appalachian Mountains is of concern, particularly to federal land managers. Efforts to regenerate Table Mountain pine (TMP) stands with prescribed burning have been less successful than expected. Several factors that may play a key role in successful...

Late Quaternary history of the Owens Valley fault zone, eastern California, and surface rupture associated with the 1872 earthquake

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beanland, S.; Clark, M.M.

1993-04-01

The right-lateral Owens Valley fault zone (OVFZ) in eastern California extends north about 100 km from near the northwest shore of Owens Lake to beyond Big Pine. It passes through Lone Pine near the eastern base of the Alabama Hills and follows the floor of Owens Valley northward to the Poverty Hills, where it steps 3 km to the left and continues northwest across Crater Mountain and through Big Pine. Data from one site suggest an average net slip rate for the OVFZ of 1.5 [+-] 1 mm/yr for the past 300 ky. Several other sites yield an average Holocenemore » net slip rate of 2 [+-] 1 mm/yr. The OVFZ apparently has experienced three major Holocene earthquakes. The minimum average recurrence interval is 5,000 years at the subsidiary Lone Pine fault, whereas it is 3,300 to 5,000 years elsewhere along the OVFZ. The prehistoric earthquakes are not dated, so an average recurrence interval need not apply. However, roughly equal (characteristic) displacement apparently happened during each Holocene earthquake. The Owens Valley fault zone accommodates some of the relative motion (dextral shear) between the North American and Pacific plates along a discrete structure. This shear occurs in the Walker Lane belt of normal and strike-slip faults within the mainly extensional Basin and Range Province. In Owens Valley displacement is partitioned between the OVFZ and the nearby, subparallel, and purely normal range-front faults of the Sierra Nevada. Compared to the OVFZ, these range-front normal faults are very discontinuous and have smaller Holocene slip rates of 0.1 to 0.8 mm/yr, dip slip. Contemporary activity on adjacent faults of such contrasting styles suggests large temporal fluctuations in the relative magnitudes of the maximum and intermediate principal stresses while the extension direction remains consistently east-west.« less

47 CFR 101.31 - Temporary and conditional authorizations.

Code of Federal Regulations, 2011 CFR

2011-10-01

.... Sufficient data must be submitted to show the need for the proposed area of operation. (3) Operations in the...-point Kitt Peak, Arizona 60 N31-57-22; W111-36-42 Big Pine, California 60 N37-13-54; W118-16-34...-24 Note: Coordinates are referenced to North American Datum 1983 (NAD83). (vii) With respect to the...

Airborne Detection of Southern Pine Beetle Damage Using Key Spectral Bands

Treesearch

Gregory A. Carter; Michael R. Seal; Tim Haley

1998-01-01

Damage by the southern pine beetle(SPB) (Dendroctonus frontalis Zimm.) occurs frequently in the southeastern United States and can result in tree death over large areas. A new technique for detection of SPB activity was tested for shortleaf pine (Pinus echinata Mill.) in the Caney Creek Wilderness, Ouachita National Forest, Arkansas. Digital images...

Parasitoids of Monochamus galloprovincialis (Coleoptera, Cerambycidae), vector of the pine wood nematode, with identification key for the Palaearctic region

PubMed Central

Petersen-Silva, Ricardo; Pujade-Villar, Juli; Naves, Pedro; Edmundo Sousa; Belokobylskij,  Sergey

2012-01-01

Abstract The parasitoid complex associated with Monochamus galloprovincialis (Olivier), vector of the pine wood nematode, is discussed. Four species of the family Braconidae and one Ichneumonidae were found associated with Monochamus galloprovincialis in Portugal, namely Atanycolus denigrator (Linnaeus), Atanycolus ivanowi (Kokujev), Cyanopterus flavator (Fabricius), Doryctes striatellus (Nees) (Braconidae), and Xorides depressus (Holmgren) (Ichneumonidae). Atanycolus ivanowi, Atanycolus denigrator, Doryctes striatellus and Xorides depressus are new species for Portugal fauna, and Monochamus galloprovincialis is recorded as a new host of Xorides depressus. A key for determination of the ichneumonoid parasitoids of the pine sawyer is provided for the Palaearctic fauna. PMID:23378807

CCE fire regimes and their management

Treesearch

Robert E. Keane; Carl Key

2007-01-01

A spectacular forest in the center of the CCE cuts a 15- by 5-km swath along the Flathead River's South Fork around Big Prairie in the middle of the Bob Marshall Wilderness Area in Montana (Figure 13- 1). This wide valley bottom, which contains two patches (of about 1,000 ha each) of the last vestiges of the historic ponderosa pine ecosystem in the CCE, provides a...

Rust resistance in seedling families of Pinus albicaulis and Pinus strobiformis and implications for restoration

Treesearch

R. A. Sniezko; A. Kegley; R. Danchok; J. Hamlin; J. Hill; D. Conklin

2011-01-01

Infection and mortality levels from Cronartium ribicola, the fungus causing white pine blister rust, are very high in parts of the geographic range of Pinus albicaulis (whitebark pine) and P. strobiformis (Southwestern white pine). Genetic resistance to this non-native fungus will be one of the key factors in maintaining or restoring populations of these species in...

Manager's handbook for jack pine in the north central states.

Treesearch

John W. Benzie

1977-01-01

Provides a key for the resource manager to use in choosing silvicultural practices for the management of jack pine. Control of stand composition, growth, and stand establishment for timber production, water, wildlife, and recreation are discussed.

A hierarchical approach to forest landscape pattern characterization.

PubMed

Wang, Jialing; Yang, Xiaojun

2012-01-01

Landscape spatial patterns have increasingly been considered to be essential for environmental planning and resources management. In this study, we proposed a hierarchical approach for landscape classification and evaluation by characterizing landscape spatial patterns across different hierarchical levels. The case study site is the Red Hills region of northern Florida and southwestern Georgia, well known for its biodiversity, historic resources, and scenic beauty. We used one Landsat Enhanced Thematic Mapper image to extract land-use/-cover information. Then, we employed principal-component analysis to help identify key class-level landscape metrics for forests at different hierarchical levels, namely, open pine, upland pine, and forest as a whole. We found that the key class-level landscape metrics varied across different hierarchical levels. Compared with forest as a whole, open pine forest is much more fragmented. The landscape metric, such as CONTIG_MN, which measures whether pine patches are contiguous or not, is more important to characterize the spatial pattern of pine forest than to forest as a whole. This suggests that different metric sets should be used to characterize landscape patterns at different hierarchical levels. We further used these key metrics, along with the total class area, to classify and evaluate subwatersheds through cluster analysis. This study demonstrates a promising approach that can be used to integrate spatial patterns and processes for hierarchical forest landscape planning and management.

Seasonal relationships between foliar moisture content, heat content and biochemistry of lodge pole pine and big sagebrush foliage

Treesearch

Yi Qi; Matt Jolly; Philip E. Dennison; Rachael C. Kropp

2016-01-01

Wildland fires propagate by liberating energy contained within living and senescent plant biomass. The maximum amount of energy that can be generated by burning a given plant part can be quantified and is generally referred to as its heat content (HC). Many studies have examined heat content of wildland fuels but studies examining the seasonal variation in foliar HC...

Journeying into the Anthropocene - Scots pine and eastern hemlock over the next 400 years

Treesearch

Duncan Stone

2014-01-01

Our native trees are much loved and valued components of our forests and fields, towns and cities. For a host of reasons - conservation, landscape, shade, and their sheer visual glory, we want our trees to grow big and old. But it takes time - often several centuries - from planting a tree to the desired outcome. This means that we need to choose trees today, which can...

36 CFR 294.29 - List of designated Idaho Roadless Areas.

Code of Federal Regulations, 2014 CFR

2014-07-01

...-Spring Creek 111 X X X X Caribou Gibson 181 X X Caribou Hell Hole 168 X X Caribou Huckleberry Basin 165 X... Mink 151 X X X Caribou Williams Creek 174 X X X Caribou Worm Creek 170 X X X Challis Blue Bunch... Mountain 902 X Salmon West Big Hole 943 X X X X Salmon West Panther Creek 504 X Sawtooth Black Pine 003 X X...

Tree mortality from a short-duration freezing event and global-change-type drought in a Southwestern piñon-juniper woodland, USA

PubMed Central

2014-01-01

This study documents tree mortality in Big Bend National Park in Texas in response to the most acute one-year drought on record, which occurred following a five-day winter freeze. I estimated changes in forest stand structure and species composition due to freezing and drought in the Chisos Mountains of Big Bend National Park using permanent monitoring plot data. The drought killed over half (63%) of the sampled trees over the entire elevation gradient. Significant mortality occurred in trees up to 20 cm diameter (P < 0.05). Pinus cembroides Zucc. experienced the highest seedling and tree mortality (P < 0.0001) (55% of piñon pines died), and over five times as many standing dead pines were observed in 2012 than in 2009. Juniperus deppeana vonSteudal and Quercus emoryi Leibmann also experienced significant declines in tree density (P < 0.02) (30.9% and 20.7%, respectively). Subsequent droughts under climate change will likely cause even greater damage to trees that survived this record drought, especially if such events follow freezes. The results from this study highlight the vulnerability of trees in the Southwest to climatic change and that future shifts in forest structure can have large-scale community consequences. PMID:24949231

Post-fire ecosystem recovery trajectories along burn severity gradients

NASA Astrophysics Data System (ADS)

Newingham, B. A.; Hudak, A. T.; Bright, B. C.; Smith, A. G.; Henareh Khalyani, A.

2017-12-01

Burn severity is a term used to describe the longer-term, second-order effects of fire on ecosystems. Plant communities are assumed to recover more slowly at higher burn severities; however, this likely depends on plant community type and climate. We assessed vegetation recovery approximately a decade post-fire across North American forests (moist mixed conifer, dry mixed conifer, ponderosa pine) and shrublands (mountain big sagebrush and Wyoming big sagebrush) distributed across climate and burn severity gradients. We assessed vegetation recovery across these ecosystems as indicated by the differenced Normalized Burn Ratio derived from 1984-2016 Landsat time series imagery (LandTrendr). Additionally, we used field vegetation measurements to examine local topographic controls on burn severity and post-fire vegetation recovery. Ecosystem responses were related to climate predictors derived from downscaled 1993-2011 climate normals. We hypothesized that drier and hotter ecosystems would take longer to recover. We also predicted areas with higher burn severity to have slower recovery. We found post-fire recovery to be strongly predicted by precipitation with the slowest recovery in shrublands and ponderosa pine forest, the driest vegetation types considered. We conclude that climate and burn severity interact to determine ecosystem recovery trajectories after fire, with burn severity having larger influence in the short term, and climate having larger influence in the long term.

Development and preventative effect against pine wilt disease of a novel liquid formulation of emamectin benzoate.

PubMed

Takai, Kazuya; Suzuki, Toshio; Kawazu, Kazuyoshi

2003-03-01

Injection of the poorly water-soluble emamectin benzoate (EB) into pine trunks required the development of an efficient liquid formulation. For injection into big trees in forests a good rate of injection and a high active content were required. Tests on the viscosity and EB-solubilizing ability of 14 various solubilizers in diethylene glycol monobutyl ether (DGMBE) led to the selection of Sorpol SM-100PM as the solubilizer of the formulation. Relationships between the solubilizing ability and amounts of Sorpol SM-100PM and DGMBE relative to that of EB, and between the concentration of the latter and the viscosity or the injection rate of the formulation led to a novel 40 g litre(-1) emamectin benzoate formulation (Shot Wan Liquid Formulation), which was composed of EB (40), Sorpol SM-100PM (120), DGMBE (160) and distilled water (50 g litre(-1)) in methanol. Injection of this formulation at a dose of 10 g EB per unit volume of pine tree prevented over 90% of the trees from wilting caused by pine wood nematode, and this preventative effect continued for 3 years. Neither discolouration of the leaves nor injury around the injection hole on the trees was observed after injection of the formulation.

Florida panther habitat use response to prescribed fire

USGS Publications Warehouse

Dees, Catherine S.; Clark, Joseph D.; van Manen, Frank T.

2001-01-01

The Florida panther (Puma concolor coryi) is one of the most endangered mammals in the world, with only 30-50 adults surviving in and around Florida Panther National Wildlife Refuge and the adjacent Big Cypress National Preserve. Managers at these areas conduct annual prescribed burns in pine (Pinus sp.) as a cost-effective method of managing wildlife habitat. Our objectives were to determine if temporal and spatial relationships existed between prescribed fire an panther use of pine. to accomplish this, we paired fire-event data from the Refuge an the Preserve with panther radiolocations collected between 1989 and 1998, determined the time that had elapsed since burning had occurred in management units associated with the radiolocations, and generated a frequency distribution based on those times. We then generated ant expected frequency distribution, based on random use relative to time since burning. This analysis revealed that panther use of burned pine habitats was greatest during the first year after a management unit was burned. Also, compositional analysis indicated that panthers were more likely to position their home ranges in areas that contained pine. We conclude that prescribed burning is important to panther ecology. We suggest that panthers were attracted to <1-year-old burns because of white-tailed deer (Odocoileus virginianus) and other prey responses to vegetation and structural changed caused by the prescribed fires. The strong selection for stands burned within 1 year is a persuasive indication that it is the burning in pine, rather than the pine per se, that most influenced habitat use. Before burning rotation lengths are reduced, however, we suggest managers determine effects of shorter burning intervals on vegetation composition and evaluate the landscape-scale changes that would result. 

The 1997 Excavations at the Big Eddy Site (23CE426) in Southwest Missouri

DTIC Science & Technology

1998-11-24

Lithic Exploitation in the Midwest and Midsouth: Indiana , Ohio, and Kentucky. In Early Paleoindian Economies of Eastern North America, edited by...ice sheet covered por- tions of northern Iowa, northern and central Illi- nois, all of Michigan, about two-thirds of Indiana , most of Ohio...of deciduous and decid- uous-coniferous (principally oak-pine) forests in the Midwest was largely completed sometime be- tween ca. 12,000 and

Manager's handbook for red pine in the north-central states.

Treesearch

John W. Benzie

1977-01-01

Provides a key for the resource manager to use in choosing silvicultural practices for the management of red pine. Control of stand composition and growth, regulating the forest, and control of stand establishment for timber production, water, wildlife, and recreation are discussed.

Presence and distribution of nitrate and selected pesticides in surficial-sand aquifers and selected lakes, 1983-94, East Otter Tail County, Minnesota

USGS Publications Warehouse

Smith, Shannon E.; Ruhl, James E.

1995-01-01

Lake water was sampled from 11 sites on Little Pine, Big Pine, Rush, and Otter Tail Lakes. Nitrate-nitrogen concentrations were all below the detection limit (0.05 mg/L). The concentration of triazine herbicide compounds, as determined by immunoassay, was at or below the detection limit (0.10 ug/L) at all 11 sites. Dissolved oxygen concentrations at the sites ranged from 7.3 to 10.1 mg/L at the water surface, and from 5.3 to 9.7 mg/L at depth. Secchi disk transparency readings ranged from 4.0 to 7.4 feet. Total phosphorus concentrations were generally near or below the detection limit (0.01 mg/L) except at one site where the water had a total phosphorus concentration of 0.06 mg/L.

Regenerating Longleaf Pine Naturally

Treesearch

Thomas C. Croker; William D. Boyer

1975-01-01

Research has developed guides for consistent natural regeneration of longleaf pine by a shelterwood system. Key measures include hardwood control by fire and other means, timely preparatory and seed cuts, seed crop monitoring, seedbed preparation, protection of established seedlings, prompt removal of parent trees when reproduction is adequate, and control of...

Integrative methods for analyzing big data in precision medicine.

PubMed

Gligorijević, Vladimir; Malod-Dognin, Noël; Pržulj, Nataša

2016-03-01

We provide an overview of recent developments in big data analyses in the context of precision medicine and health informatics. With the advance in technologies capturing molecular and medical data, we entered the area of "Big Data" in biology and medicine. These data offer many opportunities to advance precision medicine. We outline key challenges in precision medicine and present recent advances in data integration-based methods to uncover personalized information from big data produced by various omics studies. We survey recent integrative methods for disease subtyping, biomarkers discovery, and drug repurposing, and list the tools that are available to domain scientists. Given the ever-growing nature of these big data, we highlight key issues that big data integration methods will face. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Insects associated with ponderosa pine in Colorado

Treesearch

Robert E. Stevens; J. Wayne Brewer; David A. Leatherman

1980-01-01

Ponderosa pine serves as a host for a wide variety of insects. Many of these, including all the particularly destructive ones in Colorado, are discussed in this report. Included are a key to the major insect groups, an annotated list of the major groups, a glossary, and a list of references.

Woody competition control

Treesearch

Robert F. Lowery

1986-01-01

Control of woody competition is necessary to maintain shortleaf pine (Pinus echinata Mill.) as an important component of natural stands and to maximize shortleaf pine plantation productivity in the Southeast. Competition control is key to maximizing timber production since growth is moisture-limited over much of its range. Volume growth gains of 40% have been reported...

Longleaf pine regeneration ecology and methods

Treesearch

Dale G. Brockway; Kenneth W. Outcalt; William D. Boyer

2006-01-01

Regenerating longleaf pine (Pinus palustris) is key to its long-term sustainable production of forest resources and its perpetuation as the dominant tree species in a variety of important ecosystems ranging from xeric to mesic to hydric site conditions. Early regeneration to problems and the subsequent efforts to overcome these are significant...

Diterpenoid fingerprints in pine foliage across an environmental and chemotypic matrix: Isoabienol content is a key trait differentiating chemotypes.

PubMed

Kännaste, Astrid; Laanisto, Lauri; Pazouki, Leila; Copolovici, Lucian; Suhorutšenko, Marina; Azeem, Muhammad; Toom, Lauri; Borg-Karlson, Anna-Karin; Niinemets, Ülo

2018-03-01

Diterpenoids constitute an important part of oleoresin in conifer needles, but the environmental and genetic controls on diterpenoid composition are poorly known. We studied the presence of diterpenoids in four pine populations spanning an extensive range of nitrogen (N) availability. In most samples, isoabienol was the main diterpenoid. Additionally, low contents of (Z)-biformene, abietadiene isomers, manoyl oxide isomers, labda-7,13,14-triene and labda-7,14-dien-13-ol were quantified in pine needles. According to the occurrence and content of diterpenoids it was possible to distinguish 'non diterpenoid pines', 'high isoabienol pines', 'manoyl oxide - isoabienol pines' and 'other diterpenoid pines'. 'Non diterpenoid pines', 'high isoabienol pines' and 'other diterpenoid pines' were characteristic to the dry forest, yet the majority of pines (>80%) of the bog Laeva represented 'high isoabienol pines'. 'Manoyl oxide - isoabienol pines' were present only in the wet sites. Additionally, orthogonal partial least-squares analysis showed, that in the bogs foliar nitrogen content per dry mass (N M ) correlated to diterpenoids. Significant correlations existed between abietadienes, isoabienol and foliar N M in 'manoyl oxide - isoabienol pines', and chemotypic variation was also associated by population genetic distance estimated by nuclear microsatellite markers. Previously, the presence of low and high Δ-3-carene pines has been demonstrated, but the results of the current study indicate that also diterpenoids form an independent axis of chemotypic differentiation. Further studies are needed to understand whether the enhanced abundance of diterpenoids in wetter sites reflects a phenotypic or genotypic response. Copyright © 2017 Elsevier Ltd. All rights reserved.

Archaeological Investigations on the East Fork of the Salmon River, Custer County, Idaho.

DTIC Science & Technology

1984-01-01

coniferous environment in addition to pine marten (Martes americana), red squirrel (Tamiasciurus hudsonicus), porcupine (Erithizon dorsatum), mountain vole...can be seen in small herds throughout the East Fork valley from the Salmon River to Big Boulder Creek. Two bands of Rocky Mountain bighorn sheep...utilize the Challis Planning Unit, one on the East Fork and the other in the Birch Creek area. The East Fork herd is comprised of approximately 50-70

The Big Burn: C Emissions from the Northern Rockies 1910 Fires

NASA Astrophysics Data System (ADS)

Walsh, E.; Hudiburg, T. W.

2017-12-01

The forest fires in August of 1910 were one of the greatest fire events in modern U.S. history. The Big Burn of northern Idaho and northwest Montana overwhelmed the burgeoning U.S. Forest Service suppression efforts and would ultimately harden the policy of fire suppression in the United States that prevails today. The fire burned 12k km2 (approximately the size of Connecticut) in two days with an estimated loss of 8 billion board feet of timber valued at $329 million (2016 dollars). Though one of the greatest natural events in U.S. history, little research has focused on the effect of the fires on CO2 emissions and forest successional pathways of this region. Based on fire extents and timber mortality reports, we estimate the fire resulted in 11 Mg/ha in dead woody biomass and potentially as much as 52 Tg C (191 Tg CO2) released as direct emissions. This is 58%-116% above the average yearly direct carbon emissions due to fire during 2002-2012 in the CONUS. We modeled the subsequent fires and change in species composition providing a measure of the observed shift from white pine (Pinus monticola), western larch (Larix occidentalis) and fir (Abies spp.) to lodgepole pine (Pinus contorta). These models can provide biogeochemical and forest successional pathway context for future changes in forest composition and fire severity/extent due to climate change.

Acoustic evaluation of loblolly pine tree- and lumber-length logs allows for segregation of lumber modulus of elasticity, not for modulus of rupture

Treesearch

Mark Alexander Butler; Joseph Dahlen; Thomas L. Eberhardt; Cristian Montes; Finto Antony; Richard F. Daniels

2017-01-01

Key message Loblolly pine (Pinus taeda) logs can be evaluated using acoustic velocity whereby threshold acoustic velocity values can be set to ensure lumber meets specified mechanical property design values for modulus of elasticity. Context...

Reproducing Southern Hardwoods is Easier Than You Think

Treesearch

R. L. Johnson; R. C. Biesterfeldt

1971-01-01

Throughout the South poor upland hardwood stands are being converted to pine, while bottom-land hardwood stands are largely ignored. Why are Southern foresters preoccupied with pines? Uncertainties about hardwood markets and gaps in available information about hardwood management are contributing causes, but fear is probably a key factor. Foresters much prefer the well...

Standard plans for southern pine bridges

Treesearch

P. D. Hilbrich Lee; M. A. Ritter; M. H. Triche

1995-01-01

The development of standardized timber bridge plans and specifications is a key element in improving design and construction practices. The bridge plans presented were developed as a cooperative effort between the USDA Forest Service, Forest Products Laboratory (FPL); the University of Alabama; and the Southern Pine Council and are the first step in developing...

Tree planters` notes, Volume 46, Number 1, Winter 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nisley, R.

1995-12-31

;Contents: Will We Run Out of Wood in the South; Effectiveness of Big Game Repellent - Powder(R) (BGR-P) and Garlic in Inhibiting Browsing of Western Redclear by Black-Tailed Deer; Germinant Sowing in South Africa; A New Greenhouse Photoperiod Lighting System for Prevention of Seedling Dormancy; Nitrogen Fertilization Requirements of Douglas-fir Container Seedlings Vary by Seed Source; Legume Seeding Trials in a Forested Area of North-Central Washington; and Survival and Growth of Planted Loblolly Pine Seedlings on a Severely Rutted Site.

Baseline assessment of fish communities, benthic macroinvertebrate communities, and stream habitat and land use, Big Thicket National Preserve, Texas, 1999-2001

USGS Publications Warehouse

Moring, J. Bruce

2003-01-01

The Big Thicket National Preserve comprises 39,300 hectares in the form of nine preserve units connected by four stream corridor units (with two more corridor units proposed) distributed over the lower Neches and Trinity River Basins of southeastern Texas. Fish and benthic macroinvertebrate data were collected at 15 stream sites (reaches) in the preserve during 1999–2001 for a baseline assessment and a comparison of communities among stream reaches. The fish communities in the preserve were dominated by minnows (family Cyprinidae) and sunfishes (family Centrarchidae). Reaches with smaller channel sizes generally had higher fish species richness than the larger reaches in the Neches River and Pine Island Bayou units of the preserve. Fish communities in geographically adjacent reaches were most similar in overall community structure. The blue sucker, listed by the State as a threatened species, was collected in only one reach—a Neches River reach a few miles downstream from the Steinhagen Lake Dam. Riffle beetles (family Elmidae) and midges (family Chironomidae) dominated the aquatic insect communities at the 14 reaches sampled for aquatic insects in the preserve. The Ephemeroptera, Plecoptera and Trichoptera (EPT) Index, an index sensitive to water-quality degradation, was smallest at the Little Pine Island Bayou near Beaumont reach that is in a State 303(d)-listed stream segment on Little Pine Island Bayou. Trophic structure of the aquatic insect communities is consistent with the river continuum concept with shredder and scraper insect taxa more abundant in reaches with smaller stream channels and filter feeders more abundant in reaches with larger channels. Aquatic insect community metrics were not significantly correlated to any of the stream-habitat or land-use explanatory variables. The percentage of 1990s urban land use in the drainage areas upstream from 12 bioassessment reaches were negatively correlated to the reach structure index, which indicates less stable habitat for aquatic biota.

Big data for health.

PubMed

Andreu-Perez, Javier; Poon, Carmen C Y; Merrifield, Robert D; Wong, Stephen T C; Yang, Guang-Zhong

2015-07-01

This paper provides an overview of recent developments in big data in the context of biomedical and health informatics. It outlines the key characteristics of big data and how medical and health informatics, translational bioinformatics, sensor informatics, and imaging informatics will benefit from an integrated approach of piecing together different aspects of personalized information from a diverse range of data sources, both structured and unstructured, covering genomics, proteomics, metabolomics, as well as imaging, clinical diagnosis, and long-term continuous physiological sensing of an individual. It is expected that recent advances in big data will expand our knowledge for testing new hypotheses about disease management from diagnosis to prevention to personalized treatment. The rise of big data, however, also raises challenges in terms of privacy, security, data ownership, data stewardship, and governance. This paper discusses some of the existing activities and future opportunities related to big data for health, outlining some of the key underlying issues that need to be tackled.

Producing high-quality slash pine seeds

Treesearch

James Barnett; Sue Varela

2003-01-01

Slash pine is a desirable species. It serves many purposes and is well adapted to poorly drained flatwoods and seasonally flooded areas along the lower Coastal Plain of the Southeastern US. The use of high-quality seeds has been shown to produce uniform seedlings for outplanting, which is key to silvicultural success along the Coastal Plain and elsewhere. We present...

Recognizing Developmental Stages in Southern Pine Flowers: The Key to Controlled Pollination

Treesearch

David L. Bramlett; Claude H. O' Gwynn

1980-01-01

Controlled pollinations are vital in southern pine tree improvement programs. Effective pollinations depend upon three operations. First, female flowers must be enclosed in isolation bags when they are in the proper stage of development. Then, viable pollen must be supplied to the ovules when the female flowers are most receptive. Finally, the developing cones must...

Spectroscopic Analysis of Temporal Changes in Leaf Moisture and Dry Matter Content

NASA Astrophysics Data System (ADS)

Qi, Y.; Dennison, P. E.; Brewer, S.; Jolly, W. M.; Kropp, R.

2013-12-01

Live fuel moisture (LFM), the ratio of water content to dry matter content (DMC) in live fuel, is critical for determining fire danger and behavior. Remote sensing estimation of LFM often relies on an assumption of changing water content and stable DMC over time. In order to advance understanding of temporal variation in LFM and DMC, we collected field samples and spectroscopic data for two species, lodgepole pine (Pinus contorta) and big sagebrush (Artemisia tridentata), to explore seasonal trends and spectral expression of these trends. New and old needles were measured separately for lodgepole pine. All samples were measured using a visible/NIR/SWIR spectrometer, and coincident samples were processed to provide LFM, DMC, water content and chemical components including structural and non-structural carbohydrates. New needles initially exhibited higher LFM and a smaller proportion of DMC, but differences between new and old needles converged as the new needles hardened. DMC explained more variation in LFM than water content for new pine needles and sagebrush leaves. Old pine needles transported non-structural carbohydrates to new needles to accumulate DMC during the growth season, resulting decreasing LFM in new needles. DMC and water content co-varied with vegetation chemical components and physical structure. Spectral variation in response to changing DMC is difficulty to isolate from the spectral signatures of multiple chemical components. Partial least square regression combined with hyperspectral data may increase modeling performance in LFM estimation.

Development and characterization of thirteen microsatellite loci in Clark's nutcracker (Nucifraga columbiana)

USGS Publications Warehouse

Oyler-McCance, Sara J.; Fike, Jennifer A.; Castoe, Todd A.; Tomback, Diana F.; Wunder, Michael B.; Schaming, Taza D.

2013-01-01

Clark’s nutcrackers are important seed dispersers for two widely-distributed western North American conifers, whitebark pine and limber pine, which are declining due to outbreaks of mountain pine beetle and white pine blister rust. Because nutcracker seed dispersal services are key to maintaining viable populations of these imperiled pines, knowledge of movement patterns of Clark’s nutcrackers helps managers understand local extinction risks for these trees. To investigate population structure within Clark’s nutcracker, we developed primers for and characterized 13 polymorphic microsatellite loci. In a screen of 22 individuals from one population, levels of variability ranged from 6 to 15 alleles. No loci were found to be linked, although 4 loci revealed significant departures from Hardy–Weinberg equilibrium and evidence of null alleles. These microsatellite loci will enable population genetic analyses of Clark’s nutcrackers, which could provide insights into the spatial relationships between nutcrackers and the trees they help disperse.

Drought-induced defoliation and long periods of near-zero gas exchange play a key role in accentuating metabolic decline of Scots pine.

PubMed

Poyatos, Rafael; Aguadé, David; Galiano, Lucía; Mencuccini, Maurizio; Martínez-Vilalta, Jordi

2013-10-01

Drought-induced defoliation has recently been associated with the depletion of carbon reserves and increased mortality risk in Scots pine (Pinus sylvestris). We hypothesize that defoliated individuals are more sensitive to drought, implying that potentially higher gas exchange (per unit of leaf area) during wet periods may not compensate for their reduced photosynthetic area. We measured sap flow, needle water potentials and whole-tree hydraulic conductance to analyse the drought responses of co-occurring defoliated and nondefoliated Scots pines in northeast Spain during typical (2010) and extreme (2011) drought conditions. Defoliated Scots pines showed higher sap flow per unit leaf area during spring, but were more sensitive to summer drought, relative to nondefoliated pines. This pattern was associated with a steeper decline in soil-to-leaf hydraulic conductance with drought and an enhanced sensitivity of canopy conductance to soil water availability. Near-homeostasis in midday water potentials was observed across years and defoliation classes, with minimum values of -2.5 MPa. Enhanced sensitivity to drought and prolonged periods of near-zero gas exchange were consistent with low levels of carbohydrate reserves in defoliated trees. Our results support the critical links between defoliation, water and carbon availability, and their key roles in determining tree survival and recovery under drought. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Screwworm (Diptera: Calliphoridae) in the United States: Response to and Elimination of the 2016-2017 Outbreak in Florida.

PubMed

Skoda, Steven R; Phillips, Pamela L; Welch, John B

2018-05-02

Eradicating screwworm, Cochliomyia hominivorax (Coquerel), from continental North American via the sterile insect technique has provided huge economic benefit to livestock producers by eliminating screwworm myiasis. After confirmatory identification of fly samples from infested deer by the USDA National Veterinary Services Laboratory on September 30, 2016, an alert was issued that screwworm myiasis was discovered in the Florida Keys. Personnel from USDA Animal and Plant Health Inspection Service, Agricultural Research Service, the State of Florida, U.S. Fish and Wildlife Service and local officials responded to the outbreak focus on Big Pine Key. After witnessing infested Key deer (Odocoileus virginianus clavium Barboyr & Allen), screwworm adult sampling was initiated at 0930 h on October 5, 2016 using nets to collect flies arriving at putrid liver, with the first female collected within 1 h. Larval samples were collected from infested animals for DNA analyses and to develop a "Florida outbreak" colony to test mating compatibility with the mass-produced strain used for sterile fly releases. Ground release chambers for sterile screwworm releases were placed in favorable habitats based on satellite image analyses. Sterile pupae were first placed in the chambers on October 11, 2016. Further liver trapping showed that 13 Keys were infested. One case, presumably through animal movement, occurred near Homestead on the Florida mainland. Ultimately there were 35 sterile fly release stations, including 4 located around Homestead, but no further cases were identified. About 188 million sterile flies were released until successful eradication was declared on March 23, 2017. Containing the outbreak prevented economic losses to livestock producers and other wildlife on the mainland and kept eradication costs to a minimum.

Longleaf Pine Regeneration and Management: An Overstory Overview

Treesearch

William D. Boyer

1997-01-01

Longleaf pine is the key tree in fire-dependent ecosystems long native to the southeastern United States. Once the most extensive forest ecosystem in North America dominated by a single species, it now occupies only a small fraction of its former range. Longleaf has the reputation of being a slow-growing species that is nearly impossible to regenerate and so...

Occurrence of fire in longleaf pine stands in the Southeastern United States

Treesearch

Kenneth W. Outcalt

2000-01-01

A healthy understory commmunity is a key factor in maintaining the biodiversity of longleaf pine (Pinus palustris) stands, and there appears to be a strong relationship between the occurrence of fire and the condition of the understory vegetauon. Generally, the understory is healthier in burned areas than in those not burned. TO assess the USC of...

Long-term monitoring of high-elevation white pine communities in Pacific West Region National Parks

Treesearch

Shawn T. McKinney; Tom Rodhouse; Les Chow; Penelope Latham; Daniel Sarr; Lisa Garrett; Linda Mutch

2011-01-01

National Park Service Inventory and Monitoring (I&M) networks conduct long-term monitoring to provide park managers information on the status and trends in key biological and environmental attributes (Vital Signs). Here we present an overview of a collaborative approach to long-term monitoring of high-elevation white pine forest dynamics among three Pacific West...

The Massabesic Experimental Forest

Treesearch

Thomas W. McConkey; Wendell E. Smith

1958-01-01

White pine and fire! These two - the tree and its destroyer, fire - are keys to the history and present make-up of the research program on the Massabesic Experimental Forest at Alfred, Maine. The Forest was established in the late 1930's to study the management of eastern white pine. During World War II, it was shut down, and reopened again in 1946. Then, in 1947...

Effects of Age and Size on Xylem Phenology in Two Conifers of Northwestern China.

PubMed

Zeng, Qiao; Rossi, Sergio; Yang, Bao

2017-01-01

The climatic signals that directly affect the trees can be registered by xylem during its growth. If the timings and duration of xylem formation change, xylogenesis can occur under different environmental conditions and subsequently be subject to different climatic signals. An experimental design was applied in the field to disentangle the effects of age and size on xylem phenology, and it challenges the hypothesis that the timings and dynamics of xylem growth are size-dependent. Intra-annual dynamics of xylem formation were monitored weekly during the growing seasons 2013 and 2014 in Chinese pine ( Pinus tabulaeformis ) and Qilian juniper ( Juniperus przewalskii ) with different sizes and ages in a semi-arid region of northwestern China. Cell differentiation started 3 weeks earlier in 2013 and terminated 1 week later in 2014 in small-young pines than in big-old pines. However, differences in the timings of growth reactivation disappeared when comparing the junipers with different sizes but similar age. Overall, 77 days were required for xylem differentiation to take place, but timings were shorter for older trees, which also exhibited smaller cell production. Results from this study suggest that tree age does play an important role in timings and duration of growth. The effect of age should also be considered to perform reliable responses of trees to climate.

Degree-day model for timing insecticide applications to control Dioryctria amatella (Lepidoptera: Pyralidae) in loblolly pine seed orchards

Treesearch

James L. Hanula; Gary L. DeBarr; Julie C. Weatherby; Larry R. Barber; C. Wayne Berisford

2002-01-01

Because Dioryctria amatella (Hulst) is a key pest in loblolly pine, Pinus taeda L. (Pinaceac), seed orchards in the southeastern United States, improved timing of insecticide applications would be valuable for its control. To time two fenvalerate (Pydrin® 2.4 EC) applications we tested four variations of a degree day model that...

Tree mortality following prescribed fire and a storm surge event in Slash Pine (pinus elliottii var. densa) forests in the Florida Keys, USA

USGS Publications Warehouse

Sah, Jay P.; Ross, Michael S.; Snyder, James R.; Ogurcak, Danielle E.

2010-01-01

In fire-dependent forests, managers are interested in predicting the consequences of prescribed burning on postfire tree mortality. We examined the effects of prescribed fire on tree mortality in Florida Keys pine forests, using a factorial design with understory type, season, and year of burn as factors. We also used logistic regression to model the effects of burn season, fire severity, and tree dimensions on individual tree mortality. Despite limited statistical power due to problems in carrying out the full suite of planned experimental burns, associations with tree and fire variables were observed. Post-fire pine tree mortality was negatively correlated with tree size and positively correlated with char height and percent crown scorch. Unlike post-fire mortality, tree mortality associated with storm surge from Hurricane Wilma was greater in the large size classes. Due to their influence on population structure and fuel dynamics, the size-selective mortality patterns following fire and storm surge have practical importance for using fire as a management tool in Florida Keys pinelands in the future, particularly when the threats to their continued existence from tropical storms and sea level rise are expected to increase.

Description of the physical environment an coal-mining history of West-Central Indiana, with emphasis on six small watersheds

USGS Publications Warehouse

Martin, Jeffrey D.; Crawford, Charles G.; Duwelius, Richard F.; Renn, Danny E.

1990-01-01

Pond Creek and the unnamed tributary to Big Branch are streams that drain mined and unreclaimed watersheds. Approximately one-half of the Pond Creek watershed is unmined, agricultural land. Soils are very well-drained shaly silty loams that have formed or' steeply sloping spoil banks. Both watersheds contain numerous impoundments of water and have enclosed areas that do not contribute surface runoff to streamflow. The ridges of mine spoil are covered with pine trees, but much of the soil surface is devoid of vegetation.

Comparison of the surface coat proteins of the pine wood nematode appeared during host pine infection and in vitro culture by a proteomic approach.

PubMed

Shinya, Ryoji; Morisaka, Hironobu; Takeuchi, Yuko; Ueda, Mitsuyoshi; Futai, Kazuyoshi

2010-12-01

Pine wilt disease, caused by the pine wood nematode (PWN), Bursaphelenchus xylophilus, has become of worldwide quarantine concern in recent years. Here, we disclosed the surface coat (SC) proteins of the PWN which are thought to be one of the key components in pine wilt development. This is the first report that focused on the SC proteins and thoroughly identified those proteins of a plant-parasitic nematode using the proteomic approach. In this study, SC protein profiles were compared for PWNs grown on the fungus Botrytis cinerea and in host pine seedlings. The results demonstrated that the gross amount of PWN SC proteins drastically increased during infection of the host pine. Thirty-seven protein bands showed significant quantity differences between fungus-grown and host-origin PWNs, and were used for identification by matrix-assisted laser desorption ionization time of flight mass spectrometry analysis. These included several proteins that are presumed to be involved in the host immune response; for example, regulators of reactive oxygen species (ROS) and a ROS scavenger. These results might suggest that the PWN SC proteins are crucial in modulating or evading host immune response. Our data provide a new insight into the mechanism of pine wilt disease and the biological role of the SC proteins of plant-parasitic nematodes.

A 2-Cys peroxiredoxin in response to oxidative stress in the pine wood nematode, Bursaphelenchus xylophilus.

PubMed

Li, Zhen; Zhang, Qingwen; Zhou, Xuguo

2016-06-07

The pine wood nematode, Bursaphelenchus xylophilus, is the causal agent of pine wilt disease that has devastated pine forests in Asia. Parasitic nematodes are known to have evolved antioxidant stress responses that defend against host plant defenses. In this study, the infestation of whitebark pine, Pinus bungean, with B. xylophilus led to a significant increase in plant hydrogen peroxide (H2O2) and salicylic acid levels. Correspondingly, the expression of an antioxidative enzyme, 2-Cysteine peroxiredoxin (BxPrx), was elevated in B. xylophilus following the H2O2 treatments. Recombinant BxPrx, a thermal stabile and pH tolerant enzyme, exhibited high level of antioxidant activity against H2O2, suggesting that it is capable of protecting cells from free radical attacks. Immunohistochemical localization study showed that BxPrx was broadly expressed across different tissues and could be secreted outside the nematode. Finally, the number of BxPrx homologs in both dauer-like and fungi-feeding B. xylophilus were comparable based on bioinformatics analysis of existing EST libraries, indicating a potential role of BxPrx in both propagative and dispersal nematodes. These combined results suggest that BxPrx is a key genetic factor facilitating the infestation and distribution of B. xylophilus within pine hosts, and consequently the spread of pine wilt disease.

Proceedings of the Symposium on Ponderosa Pine: Issues, Trends, and Management, 2004 October 18-21, Klamath Falls, OR

Treesearch

Martin W. Ritchie; Douglas A. Maguire; Andrew Youngblood

2005-01-01

Ponderosa pine is one of the most widely distributed tree species in western North America. It is highly-valued as a source of lumber, but also is key to the health and social value western forests, whether growing in pure stands or in mixture with other conifer and hardwood species. In recent years, management objectives for forests containing this species have...

Silviculture that sustains: the nexus between silviculture, frequent prescribed fire, and conservation of biodiversity in longleaf pine forests of the southeastern United States

Treesearch

R.J. Mitchell; J.K. Hiers; J.J. O' Brien; S.B. Jack; R.T. Engstrom

2006-01-01

The longleaf pine (Pinus palustris Mill.) forest ecosystem of the US southeastern Coastal Plain, among the most biologically diverse ecosystems in North America, originally covered over 24 x 106 ha but now occupy less than 5% of their original extent. The key factor for sustaining their high levels of diversity is the frequent...

Lessons from 72 years of monitoring a once-cut pine-hardwood stand on the Crossett Experimental Forest, Arkansas, U.S.A

Treesearch

Don C. Bragg; Michael G. Shelton

2011-01-01

The Crossett Experimental Forest was established in 1934 to provide landowners in the Upper West Gulf Coastal Plain with reliable, science-based advice on how to manage their loblolly (Pinus taeda) and shortleaf (Pinus echinata) pine-dominated forests. A key component of this program was the establishment of an unmanaged control, currently known as the Russell R....

Co-occurrence dynamics of endangered Lower Keys marsh rabbits and free-ranging domestic cats: Prey responses to an exotic predator removal program.

PubMed

Cove, Michael V; Gardner, Beth; Simons, Theodore R; O'Connell, Allan F

2018-04-01

The Lower Keys marsh rabbit ( Sylvilagus palustris hefneri ) is one of many endangered endemic species of the Florida Keys. The main threats are habitat loss and fragmentation from sea-level rise, development, and habitat succession. Exotic predators such as free-ranging domestic cats ( Felis catus ) pose an additional threat to these endangered small mammals. Management strategies have focused on habitat restoration and exotic predator control. However, the effectiveness of predator removal and the effects of anthropogenic habitat modifications and restoration have not been evaluated. Between 2013 and 2015, we used camera traps to survey marsh rabbits and free-ranging cats at 84 sites in the National Key Deer Refuge, Big Pine Key, Florida, USA. We used dynamic occupancy models to determine factors associated with marsh rabbit occurrence, colonization, extinction, and the co-occurrence of marsh rabbits and cats during a period of predator removal. Rabbit occurrence was positively related to freshwater habitat and patch size, but was negatively related to the number of individual cats detected at each site. Furthermore, marsh rabbit colonization was negatively associated with relative increases in the number of individual cats at each site between survey years. Cat occurrence was negatively associated with increasing distance from human developments. The probability of cat site extinction was positively related to a 2-year trapping effort, indicating that predator removal reduced the cat population. Dynamic co-occurrence models suggested that cats and marsh rabbits co-occur less frequently than expected under random conditions, whereas co-detections were site and survey-specific. Rabbit site extinction and colonization were not strongly conditional on cat presence, but corresponded with a negative association. Our results suggest that while rabbits can colonize and persist at sites where cats occur, it is the number of individual cats at a site that more strongly influences rabbit occupancy and colonization. These findings indicate that continued predator management would likely benefit endangered small mammals as they recolonize restored habitats.

Significance of wood terpenoids in the resistance of Scots pine provenances against the old house borer, Hylotrupes bajulus, and brown-rot fungus, Coniophora puteana.

PubMed

Nerg, A M; Heijari, J; Noldt, U; Viitanen, H; Vuorinen, M; Kainulainen, P; Holopainen, J K

2004-01-01

We tested how terpenoid (i.e., monoterpenes and resin acids) composition and concentration in wood affects resistance against wood-borers and decaying fungi. Scots pine (Pinus sylvestris) wood from nine provenances having variable terpenoid profiles was studied against the old house borer, Hylotrupes bajulus, and the decay fungus, Coniophora puteana. Provenances represented a 1200-km N-S transect from Estonia to northern Finland, but they were all cultivated for 7 years in the same nursery field, in central Finland. Mean relative growth rate (MRGR) of small H. hajulus larvae positively correlated with the total monoterpene concentration of wood, and feeding was associated with high proportion of levopimaric+palustric acid in wood. Provenance did not affect the MRGR of small or big larvae, but big larvae consumed more wood and produced more frass on the northern Ylitornio trees than on the southern Rakvere and Ruokolahti trees. Low beta-pinene and total monoterpene concentration and low beta: alpha-pinene ratio in wood were all associated with a high number of eggs. The most northern Muonio provenance was the most favored as an oviposition site, differing significantly from Saaremaa, Tenhola, and Suomussalmi. Wood from Saaremaa, Tenhola, Ruokolahti, and Suomussalmi provenance was most resistant against decay fungus, differing significantly from that of Kinnula provenance. However, decay resistance was not clearly associated with the concentrations of wood terpenoids. These results suggest that monoterpene composition of wood affects resistance against wood-boring Cerambycid beetles, but resistance against wood-decaying fungi is not as clearly associated with wood terpenoids.

Big Data in the Earth Observing System Data and Information System

NASA Technical Reports Server (NTRS)

Lynnes, Chris; Baynes, Katie; McInerney, Mark

2016-01-01

Approaches that are being pursued for the Earth Observing System Data and Information System (EOSDIS) data system to address the challenges of Big Data were presented to the NASA Big Data Task Force. Cloud prototypes are underway to tackle the volume challenge of Big Data. However, advances in computer hardware or cloud won't help (much) with variety. Rather, interoperability standards, conventions, and community engagement are the key to addressing variety.

[Contemplation on the application of big data in clinical medicine].

PubMed

Lian, Lei

2015-01-01

Medicine is another area where big data is being used. The link between clinical treatment and outcome is the key step when applying big data in medicine. In the era of big data, it is critical to collect complete outcome data. Patient follow-up, comprehensive integration of data resources, quality control and standardized data management are the predominant approaches to avoid missing data and data island. Therefore, establishment of systemic patients follow-up protocol and prospective data management strategy are the important aspects of big data in medicine.

Frontiers of Big Bang cosmology and primordial nucleosynthesis

NASA Astrophysics Data System (ADS)

Mathews, Grant J.; Cheoun, Myung-Ki; Kajino, Toshitaka; Kusakabe, Motohiko; Yamazaki, Dai G.

2012-11-01

We summarize some current research on the formation and evolution of the universe and overview some of the key questions surrounding the the big bang. There are really only two observational cosmological probes of the physics of the early universe. Of those two, the only probe during the relevant radiation dominated epoch is the yield of light elements during the epoch of big bang nucleosynthesis. The synthesis of light elements occurs in the temperature regime from 108 to 1010 K and times of about 1 to 104 sec into the big bang. The other probe is the spectrum of temperature fluctuations in the CMB which (among other things) contains information of the first quantum fluctuations in the universe, along with details of the distribution and evolution of dark matter, baryonic matter and photons up to the surface of photon last scattering. Here, we emphasize the role of these probes in answering some key questions of the big bang and early universe cosmology.

Tree Mortality following Prescribed Fire and a Storm Surge Event in Slash Pine ( Pinus elliottii var. densa ) Forests in the Florida Keys, USA

DOE PAGES

Sah, Jay P.; Ross, Michael S.; Snyder, James R.; ...

2010-01-01

In fire-dependent forests, managers are interested in predicting the consequences of prescribed burning on postfire tree mortality. We examined the effects of prescribed fire on tree mortality in Florida Keys pine forests, using a factorial design with understory type, season, and year of burn as factors. We also used logistic regression to model the effects of burn season, fire severity, and tree dimensions on individual tree mortality. Despite limited statistical power due to problems in carrying out the full suite of planned experimental burns, associations with tree and fire variables were observed. Post-fire pine tree mortality was negatively correlated withmore » tree size and positively correlated with char height and percent crown scorch. Unlike post-fire mortality, tree mortality associated with storm surge from Hurricane Wilma was greater in the large size classes. Due to their influence on population structure and fuel dynamics, the size-selective mortality patterns following fire and storm surge have practical importance for using fire as a management tool in Florida Keys pinelands in the future, particularly when the threats to their continued existence from tropical storms and sea level rise are expected to increase.« less

Effects of Age and Size on Xylem Phenology in Two Conifers of Northwestern China

PubMed Central

Zeng, Qiao; Rossi, Sergio; Yang, Bao

2018-01-01

The climatic signals that directly affect the trees can be registered by xylem during its growth. If the timings and duration of xylem formation change, xylogenesis can occur under different environmental conditions and subsequently be subject to different climatic signals. An experimental design was applied in the field to disentangle the effects of age and size on xylem phenology, and it challenges the hypothesis that the timings and dynamics of xylem growth are size-dependent. Intra-annual dynamics of xylem formation were monitored weekly during the growing seasons 2013 and 2014 in Chinese pine (Pinus tabulaeformis) and Qilian juniper (Juniperus przewalskii) with different sizes and ages in a semi-arid region of northwestern China. Cell differentiation started 3 weeks earlier in 2013 and terminated 1 week later in 2014 in small-young pines than in big-old pines. However, differences in the timings of growth reactivation disappeared when comparing the junipers with different sizes but similar age. Overall, 77 days were required for xylem differentiation to take place, but timings were shorter for older trees, which also exhibited smaller cell production. Results from this study suggest that tree age does play an important role in timings and duration of growth. The effect of age should also be considered to perform reliable responses of trees to climate. PMID:29379517

Big Data Provenance: Challenges, State of the Art and Opportunities.

PubMed

Wang, Jianwu; Crawl, Daniel; Purawat, Shweta; Nguyen, Mai; Altintas, Ilkay

2015-01-01

Ability to track provenance is a key feature of scientific workflows to support data lineage and reproducibility. The challenges that are introduced by the volume, variety and velocity of Big Data, also pose related challenges for provenance and quality of Big Data, defined as veracity. The increasing size and variety of distributed Big Data provenance information bring new technical challenges and opportunities throughout the provenance lifecycle including recording, querying, sharing and utilization. This paper discusses the challenges and opportunities of Big Data provenance related to the veracity of the datasets themselves and the provenance of the analytical processes that analyze these datasets. It also explains our current efforts towards tracking and utilizing Big Data provenance using workflows as a programming model to analyze Big Data.

Crustal strain near the Big Bend of the San Andreas Fault: Analysis of the Los Padres-Tehachapi Trilateration Networks, California

NASA Astrophysics Data System (ADS)

Eberhart-Phillips, Donna; Lisowski, Michael; Zoback, Mark D.

1990-02-01

In the region of the Los Padres-Tehachapi geodetic network, the San Andreas fault (SAF) changes its orientation by over 30° from N40°W, close to that predicted by plate motion for a transform boundary, to N73°W. The strain orientation near the SAF is consistent with right-lateral shear along the fault, with maximum shear rate of 0.38±0.01 μrad/yr at N63°W. In contrast, away from the SAF the strain orientations on both sides of the fault are consistent with the plate motion direction, with maximum shear rate of 0.19±0.01 μrad/yr at N44°W. The strain rate does not drop off rapidly away from the fault, and thus the area is fit by either a broad shear zone below the SAF or a single fault with a relatively deep locking depth. The fit to the line length data is poor for locking depth d less than 25 km. For d of 25 km a buried slip rate of 30 ± 6 mm/yr is estimated. We also estimated buried slip for models that included the Garlock and Big Pine faults, in addition to the SAF. Slip rates on other faults are poorly constrained by the Los Padres-Tehachapi network. The best fitting Garlock fault model had computed left-lateral slip rate of 11±2 mm/yr below 10 km. Buried left-lateral slip of 15±6 mm/yr on the Big Pine fault, within the Western Transverse Ranges, provides significant reduction in line length residuals; however, deformation there may be more complicated than a single vertical fault. A subhorizontal detachment on the southern side of the SAF cannot be well constrained by these data. We investigated the location of the SAF and found that a vertical fault below the surface trace fits the data much better than either a dipping fault or a fault zone located south of the surface trace.

Big Data Provenance: Challenges, State of the Art and Opportunities

PubMed Central

Wang, Jianwu; Crawl, Daniel; Purawat, Shweta; Nguyen, Mai; Altintas, Ilkay

2017-01-01

Ability to track provenance is a key feature of scientific workflows to support data lineage and reproducibility. The challenges that are introduced by the volume, variety and velocity of Big Data, also pose related challenges for provenance and quality of Big Data, defined as veracity. The increasing size and variety of distributed Big Data provenance information bring new technical challenges and opportunities throughout the provenance lifecycle including recording, querying, sharing and utilization. This paper discusses the challenges and opportunities of Big Data provenance related to the veracity of the datasets themselves and the provenance of the analytical processes that analyze these datasets. It also explains our current efforts towards tracking and utilizing Big Data provenance using workflows as a programming model to analyze Big Data. PMID:29399671

Big data science: A literature review of nursing research exemplars.

PubMed

Westra, Bonnie L; Sylvia, Martha; Weinfurter, Elizabeth F; Pruinelli, Lisiane; Park, Jung In; Dodd, Dianna; Keenan, Gail M; Senk, Patricia; Richesson, Rachel L; Baukner, Vicki; Cruz, Christopher; Gao, Grace; Whittenburg, Luann; Delaney, Connie W

Big data and cutting-edge analytic methods in nursing research challenge nurse scientists to extend the data sources and analytic methods used for discovering and translating knowledge. The purpose of this study was to identify, analyze, and synthesize exemplars of big data nursing research applied to practice and disseminated in key nursing informatics, general biomedical informatics, and nursing research journals. A literature review of studies published between 2009 and 2015. There were 650 journal articles identified in 17 key nursing informatics, general biomedical informatics, and nursing research journals in the Web of Science database. After screening for inclusion and exclusion criteria, 17 studies published in 18 articles were identified as big data nursing research applied to practice. Nurses clearly are beginning to conduct big data research applied to practice. These studies represent multiple data sources and settings. Although numerous analytic methods were used, the fundamental issue remains to define the types of analyses consistent with big data analytic methods. There are needs to increase the visibility of big data and data science research conducted by nurse scientists, further examine the use of state of the science in data analytics, and continue to expand the availability and use of a variety of scientific, governmental, and industry data resources. A major implication of this literature review is whether nursing faculty and preparation of future scientists (PhD programs) are prepared for big data and data science. Copyright © 2016 Elsevier Inc. All rights reserved.

Influence of container size on Wyoming big sagebrush seedling morphology and cold hardiness

Treesearch

Kayla R. Herriman; Anthony S. Davis; R. Kasten Dumroese

2009-01-01

Wyoming big sagebrush (Artemisia tridentata) is a key component of sagebrush steppe ecosystems and is a dominant shrub throughout the western United States. Our objective was to identify the effect of container size on plant morphology of Wyoming big sagebrush. We used three different stocktypes (45/340 ml [20 in3], 60/250 ml [15 in3], 112/105 ml [6....

"Big data" in economic history.

PubMed

Gutmann, Myron P; Merchant, Emily Klancher; Roberts, Evan

2018-03-01

Big data is an exciting prospect for the field of economic history, which has long depended on the acquisition, keying, and cleaning of scarce numerical information about the past. This article examines two areas in which economic historians are already using big data - population and environment - discussing ways in which increased frequency of observation, denser samples, and smaller geographic units allow us to analyze the past with greater precision and often to track individuals, places, and phenomena across time. We also explore promising new sources of big data: organically created economic data, high resolution images, and textual corpora.

Leveraging Big Data in Pediatric Development Programs: Proceedings From the 2016 American College of Clinical Pharmacology Annual Meeting Symposium.

PubMed

Mulugeta, Lily Yeruk; Yao, Lynne; Mould, Diane; Jacobs, Brian; Florian, Jeffrey; Smith, Brian; Sinha, Vikram; Barrett, Jeffrey S

2018-01-10

This article discusses the use of big data in pediatric drug development. The article covers key topics discussed at the ACCP annual meeting symposium in 2016 including the extent to which big data or real-world data can inform clinical trial design and substitute for efficacy and safety data typically obtained in clinical trials. The current states of use, opportunities, and challenges with the use of big data in future pediatric drug development are discussed. © 2018 American Society for Clinical Pharmacology and Therapeutics.

A glossary for big data in population and public health: discussion and commentary on terminology and research methods.

PubMed

Fuller, Daniel; Buote, Richard; Stanley, Kevin

2017-11-01

The volume and velocity of data are growing rapidly and big data analytics are being applied to these data in many fields. Population and public health researchers may be unfamiliar with the terminology and statistical methods used in big data. This creates a barrier to the application of big data analytics. The purpose of this glossary is to define terms used in big data and big data analytics and to contextualise these terms. We define the five Vs of big data and provide definitions and distinctions for data mining, machine learning and deep learning, among other terms. We provide key distinctions between big data and statistical analysis methods applied to big data. We contextualise the glossary by providing examples where big data analysis methods have been applied to population and public health research problems and provide brief guidance on how to learn big data analysis methods. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Land ownership dynamics in the Big Elk Valley in Oregon during the 20th century.

Treesearch

Brett J. Butler; Brooks J. Stanfield

2002-01-01

Land ownership is a key link between society and natural resources. The dynamics of landowner patterns are demonstrated by the examination of five land ownership maps in the Big Elk Valley of the central Oregon Coast Range. These patterns are further illustrated with the presentation of a land patents map of the Big Elk Valley. We selected this watershed because of its...

Propeptide big-endothelin, N-terminal-pro brain natriuretic peptide and mortality. The Ludwigshafen risk and cardiovascular health (LURIC) study.

PubMed

Gergei, Ingrid; Krämer, Bernhard K; Scharnagl, Hubert; Stojakovic, Tatjana; März, Winfried; Mondorf, Ulrich

The endothelin system (Big-ET-1) is a key regulator in cardiovascular (CV) disease and congestive heart failure (CHF). We have examined the incremental value of Big-ET-1 in predicting total and CV mortality next to the well-established CV risk marker N-Terminal Pro-B-Type Natriuretic Peptide (NT-proBNP). Big-ET-1 and NT-proBNP were determined in 2829 participants referred for coronary angiography (follow-up 9.9 years). Big-ET-1 is an independent predictor of total, CV mortality and death due to CHF. The conjunct use of Big-ET-1 and NT-proBNP improves the risk stratification of patients with intermediate to high risk of CV death and CHF. Big-ET-1improves risk stratification in patients referred for coronary angiography.

Phenological indicators derived with CO2 flux, MODIS image and ground monitor at a temperate mixed forest and an alpine shrub

NASA Astrophysics Data System (ADS)

Zhang, Leiming; Cao, Peiyu; Li, Shenggong; Yu, Guirui; Zhang, Junhui; Li, Yingnian

2016-04-01

To accurately assess the change of phenology and its relationship with ecosystem gross primary productivity (GPP) is one of the key issues in context of global change study. In this study, an alpine shrubland meadow in Haibei (HBS) of Qinghai-Tibetan plateau and a broad-leaved Korean pine forest in Changbai Mountain (CBM) of Northeastern China were selected. Based on the long-term GPP from eddy flux measurements and the Normalized Difference Vegetation Index (NDVI) from remote sensed vegetation index, phenological indicators including the start of growing season (SOS), the end of growing season (EOS), and the growing season length (GSL) since 2003 were derived via multiple methods, and then the influences of phenology variation on GPP were explored. Compared with ground phenology observations of dominant plant species, both GPP- and NDVI-derived SOS and EOS exhibited a similar interannual trend. GPP-derived SOS was quite close to NDVI-derived SOS, but GPP-derived EOS differed significantly from NDVI-derived EOS, and thus leading to a significant difference between GPP- and NDVI-derived GSL. Relative to SOS, EOS presented larger differences between the extraction methods, indicating large uncertainties to accurately define EOS. In general, among the methods used, the threshold methods produced more satisfactory assessment on phenology change. This study highlights that how to harmonize with the flux measurements, remote sensing and ground monitoring are a big challenge that needs further consideration in phenology study, especially the accurate extraction of EOS. Key words: phenological variation, carbon flux, vegetation index, vegetation grwoth, interannual varibility

What We Have Learned From 20+ Years of Research on Effects of Drought, Fire and Management on Carbon and Water Dynamics of Pacific Northwest Semi-Arid Forests

NASA Astrophysics Data System (ADS)

Law, B. E.; Berner, L. T.; Kwon, H.; Schmidt, A.

2016-12-01

Eco-climatic heterogeneity and proximity to oceans provides endless learning opportunities for eco-physiologists and modelers alike. We have been conducting measurements and modeling of ecosystem responses to climate and disturbance over Oregon's strong climatic gradient since 1990, and in the Metolius semi-arid region. Some of our findings have challenged common assumptions. Our first flux site was the Metolius old-growth ponderosa pine site (established 1996), followed by flux measurements at clusters of different age forests. We found that the old pine site continued to be an annual net carbon sink, contrary to expectations. Twenty years after stand-replacing disturbance, naturally regenerating young ponderosa pine was still a net carbon source, and a young pine plantation with removed debris (lower decomposition) was a weak sink. Physiological sensitivity to climate varies with tree size. Young pine forests responded to seasonal drought sooner and to a more severe degree. During extreme drought years, old pine showed only a small decline in water transport efficiency (11-24%), whereas efficiency declined by 46% in mature pine, and 80% in young pine. Thus, young trees risk hydraulic failure, which may account for higher mortality in young plantations nearby. Carbon uptake (GPP), soil fluxes, and evapotranspiration (calculated from sapflux or eddy flux data) are strongly coupled in the semi-arid ecosystems, suggesting it is feasible to combine sapflux and soil flux data along with water-use efficiency (GPP/LE) from high quality eddy flux data to estimate NEE in the landscape near flux sites or in patches of forests too small for EC measurements. Highlights show our key findings from development and application of multiple models, including SPA, Biome-BGC and CLM, and ideas for future directions.

Strong resilience of soil respiration components to drought-induced die-off resulting in forest secondary succession.

PubMed

Barba, Josep; Curiel Yuste, Jorge; Poyatos, Rafael; Janssens, Ivan A; Lloret, Francisco

2016-09-01

How forests cope with drought-induced perturbations and how the dependence of soil respiration on environmental and biological drivers is affected in a warming and drying context are becoming key questions. The aims of this study were to determine whether drought-induced die-off and forest succession were reflected in soil respiration and its components and to determine the influence of climate on the soil respiration components. We used the mesh exclusion method to study seasonal variations in soil respiration (R S) and its components: heterotrophic (R H) and autotrophic (R A) [further split into fine root (R R) and mycorrhizal respiration (R M)] in a mixed Mediterranean forest where Scots pine (Pinus sylvestris L.) is undergoing a drought-induced die-off and is being replaced by holm oak (Quercus ilex L.). Drought-induced pine die-off was not reflected in R S nor in its components, which denotes a high functional resilience of the plant and soil system to pine die-off. However, the succession from Scots pine to holm oak resulted in a reduction of R H and thus in an important decrease of total respiration (R S was 36 % lower in holm oaks than in non-defoliated pines). Furthermore, R S and all its components were strongly regulated by soil water content-and-temperature interaction. Since Scots pine die-off and Quercus species colonization seems to be widely occurring at the driest limit of the Scots pine distribution, the functional resilience of the soil system over die-off and the decrease of R S from Scots pine to holm oak could have direct consequences for the C balance of these ecosystems.

Sweat Farm Road Fire in Georgia

NASA Technical Reports Server (NTRS)

2007-01-01

Dense plumes of blue-white smoke billowed from the Sweat Farm Road Fire in southern Georgia on April 19, 2007, when the Landsat 5 satellite captured this detailed image. The fire started on April 16, when a tree fell on a power line and, fanned by strong winds, quickly exploded into a major fire. By April 19, the fire had forced officials to close several roads, including U.S. Highway 1, and to evacuate hundreds of people from the perimeter of the city of Waycross, the silver cluster along the top edge of the image. The nearness of the fire is evident in the dark brown, charred land just south of the city. The active fire front is along the south edge of the burned area, where the flames are eating into the dark green hardwood forests, pine plantations, and shrubs in Okefenokee Swamp. Because of the difficult terrain, the fire and the adjoining Big Turnaround Complex fire are expected to burn until significant rain falls, said the morning report issued by the Southern Area Coordination Center on May 4. 'In the long term, the burning of the swamp will ultimately benefit the swamp wilderness habitat, which is a fire-dependent ecosystem,' said a press release issued from the Okefenokee National Wildlife Refuge on May 4. Such ecosystems require fire to remain healthy. In the case of southern pine forests, many pine species need fire to remove litter from the ground and release soil nutrients so that new seedlings can grow.

Plant Functional Type Shifts in Big Sagebrush Ecosystems: Impacts on Dryland Ecosystem Water Balance

NASA Astrophysics Data System (ADS)

Bogenschuetz, N. M.; Bearup, L. A.; Maxwell, R. M.; Santi, P. M.

2014-12-01

The mountain pine beetle (MPB), Dendroctonus ponderosae, has caused significant tree mortality within North America. Specifically, the MPB affects ponderosa pine and lodgepole pine forests within the Rocky Mountains with approximately 3.4 million acres of forest impacted over the past 20 years. The full impacts of such unprecedented tree mortality on hydrology and slope stability is not well understood. This work studies the affects of MPB infestation on slope instability. A large-scale statistical analysis of MPB and slope stability is combined with a more in-depth analysis of the factors that contribute to slope stability. These factors include: slope aspect, slope angle, root decay, regrowth and hydrologic properties, such as water table depth and soil moisture. Preliminary results show that MPB may affect a greater number of north- and east-facing slopes. This is in accordance with more water availability and a higher MPB impacted tree density on north-facing slopes which, in turn, could potentially increase the probability of slope failure. Root strength is predicted to decrease as the roots stop transpiring 3-4 years proceeding infestation. However, this effect on the hillslope is likely being counterbalanced by the regrowth of grasses, forbs, shrubs, and trees. In addition, the increase in water table height from the lack of transpiring trees is adding a driving force to the slopes. The combination of all these factors will be used in order to assess the effects of MPB tree mortality on slope stability.

Gene expression analysis of overwintering mountain pine beetle larvae suggests multiple systems involved in overwintering stress, cold hardiness, and preparation for spring development

PubMed Central

Bonnett, Tiffany; Pitt, Caitlin; Spooner, Luke J.; Fraser, Jordie; Yuen, Macaire M.S.; Keeling, Christopher I.; Bohlmann, Jörg; Huber, Dezene P.W.

2016-01-01

Cold-induced mortality has historically been a key aspect of mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae), population control, but little is known about the molecular basis for cold tolerance in this insect. We used RNA-seq analysis to monitor gene expression patterns of mountain pine beetle larvae at four time points during their overwintering period—early-autumn, late-autumn, early-spring, and late-spring. Changing transcript profiles over the winter indicates a multipronged physiological response from larvae that is broadly characterized by gene transcripts involved in insect immune responses and detoxification during the autumn. In the spring, although transcripts associated with developmental process are present, there was no particular biological process dominating the transcriptome. PMID:27441109

Gene expression analysis of overwintering mountain pine beetle larvae suggests multiple systems involved in overwintering stress, cold hardiness, and preparation for spring development.

PubMed

Robert, Jeanne A; Bonnett, Tiffany; Pitt, Caitlin; Spooner, Luke J; Fraser, Jordie; Yuen, Macaire M S; Keeling, Christopher I; Bohlmann, Jörg; Huber, Dezene P W

2016-01-01

Cold-induced mortality has historically been a key aspect of mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae), population control, but little is known about the molecular basis for cold tolerance in this insect. We used RNA-seq analysis to monitor gene expression patterns of mountain pine beetle larvae at four time points during their overwintering period-early-autumn, late-autumn, early-spring, and late-spring. Changing transcript profiles over the winter indicates a multipronged physiological response from larvae that is broadly characterized by gene transcripts involved in insect immune responses and detoxification during the autumn. In the spring, although transcripts associated with developmental process are present, there was no particular biological process dominating the transcriptome.

A Tour of Big Data, Open Source Data Management Technologies from the Apache Software Foundation

NASA Astrophysics Data System (ADS)

Mattmann, C. A.

2012-12-01

The Apache Software Foundation, a non-profit foundation charged with dissemination of open source software for the public good, provides a suite of data management technologies for distributed archiving, data ingestion, data dissemination, processing, triage and a host of other functionalities that are becoming critical in the Big Data regime. Apache is the world's largest open source software organization, boasting over 3000 developers from around the world all contributing to some of the most pervasive technologies in use today, from the HTTPD web server that powers a majority of Internet web sites to the Hadoop technology that is now projected at over a $1B dollar industry. Apache data management technologies are emerging as de facto off-the-shelf components for searching, distributing, processing and archiving key science data sets both geophysical, space and planetary based, all the way to biomedicine. In this talk, I will give a virtual tour of the Apache Software Foundation, its meritocracy and governance structure, and also its key big data technologies that organizations can take advantage of today and use to save cost, schedule, and resources in implementing their Big Data needs. I'll illustrate the Apache technologies in the context of several national priority projects, including the U.S. National Climate Assessment (NCA), and in the International Square Kilometre Array (SKA) project that are stretching the boundaries of volume, velocity, complexity, and other key Big Data dimensions.

Breaking BAD: A Data Serving Vision for Big Active Data

PubMed Central

Carey, Michael J.; Jacobs, Steven; Tsotras, Vassilis J.

2017-01-01

Virtually all of today’s Big Data systems are passive in nature. Here we describe a project to shift Big Data platforms from passive to active. We detail a vision for a scalable system that can continuously and reliably capture Big Data to enable timely and automatic delivery of new information to a large pool of interested users as well as supporting analyses of historical information. We are currently building a Big Active Data (BAD) system by extending an existing scalable open-source BDMS (AsterixDB) in this active direction. This first paper zooms in on the Data Serving piece of the BAD puzzle, including its key concepts and user model. PMID:29034377

What is big data? A consensual definition and a review of key research topics

NASA Astrophysics Data System (ADS)

De Mauro, Andrea; Greco, Marco; Grimaldi, Michele

2015-02-01

Although Big Data is a trending buzzword in both academia and the industry, its meaning is still shrouded by much conceptual vagueness. The term is used to describe a wide range of concepts: from the technological ability to store, aggregate, and process data, to the cultural shift that is pervasively invading business and society, both drowning in information overload. The lack of a formal definition has led research to evolve into multiple and inconsistent paths. Furthermore, the existing ambiguity among researchers and practitioners undermines an efficient development of the subject. In this paper we have reviewed the existing literature on Big Data and analyzed its previous definitions in order to pursue two results: first, to provide a summary of the key research areas related to the phenomenon, identifying emerging trends and suggesting opportunities for future development; second, to provide a consensual definition for Big Data, by synthesizing common themes of existing works and patterns in previous definitions.

Adapting bioinformatics curricula for big data.

PubMed

Greene, Anna C; Giffin, Kristine A; Greene, Casey S; Moore, Jason H

2016-01-01

Modern technologies are capable of generating enormous amounts of data that measure complex biological systems. Computational biologists and bioinformatics scientists are increasingly being asked to use these data to reveal key systems-level properties. We review the extent to which curricula are changing in the era of big data. We identify key competencies that scientists dealing with big data are expected to possess across fields, and we use this information to propose courses to meet these growing needs. While bioinformatics programs have traditionally trained students in data-intensive science, we identify areas of particular biological, computational and statistical emphasis important for this era that can be incorporated into existing curricula. For each area, we propose a course structured around these topics, which can be adapted in whole or in parts into existing curricula. In summary, specific challenges associated with big data provide an important opportunity to update existing curricula, but we do not foresee a wholesale redesign of bioinformatics training programs. © The Author 2015. Published by Oxford University Press.

Adapting bioinformatics curricula for big data

PubMed Central

Greene, Anna C.; Giffin, Kristine A.; Greene, Casey S.

2016-01-01

Modern technologies are capable of generating enormous amounts of data that measure complex biological systems. Computational biologists and bioinformatics scientists are increasingly being asked to use these data to reveal key systems-level properties. We review the extent to which curricula are changing in the era of big data. We identify key competencies that scientists dealing with big data are expected to possess across fields, and we use this information to propose courses to meet these growing needs. While bioinformatics programs have traditionally trained students in data-intensive science, we identify areas of particular biological, computational and statistical emphasis important for this era that can be incorporated into existing curricula. For each area, we propose a course structured around these topics, which can be adapted in whole or in parts into existing curricula. In summary, specific challenges associated with big data provide an important opportunity to update existing curricula, but we do not foresee a wholesale redesign of bioinformatics training programs. PMID:25829469

A Key for the Identification of Eighteen Common Timbers.

ERIC Educational Resources Information Center

Thomas, P. A.

1991-01-01

Dichotomous key for 18 woods in common domestic and architectural use in Britain is provided. It is based upon structures visible with the naked eye and a hand-lens. Descriptions of the necessary anatomy and terminology are given. Timbers include yew, pine, spruce, oak, sweet chestnut, elm, ash, teak, cherry, walnut, mahogany, box, beech,…

Big Data in Public Health: Terminology, Machine Learning, and Privacy.

PubMed

Mooney, Stephen J; Pejaver, Vikas

2018-04-01

The digital world is generating data at a staggering and still increasing rate. While these "big data" have unlocked novel opportunities to understand public health, they hold still greater potential for research and practice. This review explores several key issues that have arisen around big data. First, we propose a taxonomy of sources of big data to clarify terminology and identify threads common across some subtypes of big data. Next, we consider common public health research and practice uses for big data, including surveillance, hypothesis-generating research, and causal inference, while exploring the role that machine learning may play in each use. We then consider the ethical implications of the big data revolution with particular emphasis on maintaining appropriate care for privacy in a world in which technology is rapidly changing social norms regarding the need for (and even the meaning of) privacy. Finally, we make suggestions regarding structuring teams and training to succeed in working with big data in research and practice.

LSP 156, Low Power Embedded Analytics: FY15 Line Supported Information, Computation, and Exploitation Program

DTIC Science & Technology

2015-12-04

from back-office big - data analytics to fieldable hot-spot systems providing storage-processing-communication services for off- grid sensors. Speed...and power efficiency are the key metrics. Current state-of-the art approaches for big - data aim toward scaling out to many computers to meet...pursued within Lincoln Laboratory as well as external sponsors. Our vision is to bring new capabilities in big - data and internet-of-things applications

Co‐occurrence dynamics of endangered Lower Keys marsh rabbits and free‐ranging domestic cats: Prey responses to an exotic predator removal program

USGS Publications Warehouse

Cove, Michael V.; Gardner, Beth; Simons, Theodore R.; O'Connell, Allan F.

2018-01-01

The Lower Keys marsh rabbit (Sylvilagus palustris hefneri) is one of many endangered endemic species of the Florida Keys. The main threats are habitat loss and fragmentation from sea‐level rise, development, and habitat succession. Exotic predators such as free‐ranging domestic cats (Felis catus) pose an additional threat to these endangered small mammals. Management strategies have focused on habitat restoration and exotic predator control. However, the effectiveness of predator removal and the effects of anthropogenic habitat modifications and restoration have not been evaluated. Between 2013 and 2015, we used camera traps to survey marsh rabbits and free‐ranging cats at 84 sites in the National Key Deer Refuge, Big Pine Key, Florida, USA. We used dynamic occupancy models to determine factors associated with marsh rabbit occurrence, colonization, extinction, and the co‐occurrence of marsh rabbits and cats during a period of predator removal. Rabbit occurrence was positively related to freshwater habitat and patch size, but was negatively related to the number of individual cats detected at each site. Furthermore, marsh rabbit colonization was negatively associated with relative increases in the number of individual cats at each site between survey years. Cat occurrence was negatively associated with increasing distance from human developments. The probability of cat site extinction was positively related to a 2‐year trapping effort, indicating that predator removal reduced the cat population. Dynamic co‐occurrence models suggested that cats and marsh rabbits co‐occur less frequently than expected under random conditions, whereas co‐detections were site and survey‐specific. Rabbit site extinction and colonization were not strongly conditional on cat presence, but corresponded with a negative association. Our results suggest that while rabbits can colonize and persist at sites where cats occur, it is the number of individual cats at a site that more strongly influences rabbit occupancy and colonization. These findings indicate that continued predator management would likely benefit endangered small mammals as they recolonize restored habitats.

Epidemiology in wonderland: Big Data and precision medicine.

PubMed

Saracci, Rodolfo

2018-03-01

Big Data and precision medicine, two major contemporary challenges for epidemiology, are critically examined from two different angles. In Part 1 Big Data collected for research purposes (Big research Data) and Big Data used for research although collected for other primary purposes (Big secondary Data) are discussed in the light of the fundamental common requirement of data validity, prevailing over "bigness". Precision medicine is treated developing the key point that high relative risks are as a rule required to make a variable or combination of variables suitable for prediction of disease occurrence, outcome or response to treatment; the commercial proliferation of allegedly predictive tests of unknown or poor validity is commented. Part 2 proposes a "wise epidemiology" approach to: (a) choosing in a context imprinted by Big Data and precision medicine-epidemiological research projects actually relevant to population health, (b) training epidemiologists, (c) investigating the impact on clinical practices and doctor-patient relation of the influx of Big Data and computerized medicine and (d) clarifying whether today "health" may be redefined-as some maintain in purely technological terms.

A proposed framework of big data readiness in public sectors

NASA Astrophysics Data System (ADS)

Ali, Raja Haslinda Raja Mohd; Mohamad, Rosli; Sudin, Suhizaz

2016-08-01

Growing interest over big data mainly linked to its great potential to unveil unforeseen pattern or profiles that support organisation's key business decisions. Following private sector moves to embrace big data, the government sector has now getting into the bandwagon. Big data has been considered as one of the potential tools to enhance service delivery of the public sector within its financial resources constraints. Malaysian government, particularly, has considered big data as one of the main national agenda. Regardless of government commitment to promote big data amongst government agencies, degrees of readiness of the government agencies as well as their employees are crucial in ensuring successful deployment of big data. This paper, therefore, proposes a conceptual framework to investigate perceived readiness of big data potentials amongst Malaysian government agencies. Perceived readiness of 28 ministries and their respective employees will be assessed using both qualitative (interview) and quantitative (survey) approaches. The outcome of the study is expected to offer meaningful insight on factors affecting change readiness among public agencies on big data potentials and the expected outcome from greater/lower change readiness among the public sectors.

Enhanced K-means clustering with encryption on cloud

NASA Astrophysics Data System (ADS)

Singh, Iqjot; Dwivedi, Prerna; Gupta, Taru; Shynu, P. G.

2017-11-01

This paper tries to solve the problem of storing and managing big files over cloud by implementing hashing on Hadoop in big-data and ensure security while uploading and downloading files. Cloud computing is a term that emphasis on sharing data and facilitates to share infrastructure and resources.[10] Hadoop is an open source software that gives us access to store and manage big files according to our needs on cloud. K-means clustering algorithm is an algorithm used to calculate distance between the centroid of the cluster and the data points. Hashing is a algorithm in which we are storing and retrieving data with hash keys. The hashing algorithm is called as hash function which is used to portray the original data and later to fetch the data stored at the specific key. [17] Encryption is a process to transform electronic data into non readable form known as cipher text. Decryption is the opposite process of encryption, it transforms the cipher text into plain text that the end user can read and understand well. For encryption and decryption we are using Symmetric key cryptographic algorithm. In symmetric key cryptography are using DES algorithm for a secure storage of the files. [3

Channelized ice melting in the ocean boundary layer beneath Pine Island Glacier, Antarctica.

PubMed

Stanton, T P; Shaw, W J; Truffer, M; Corr, H F J; Peters, L E; Riverman, K L; Bindschadler, R; Holland, D M; Anandakrishnan, S

2013-09-13

Ice shelves play a key role in the mass balance of the Antarctic ice sheets by buttressing their seaward-flowing outlet glaciers; however, they are exposed to the underlying ocean and may weaken if ocean thermal forcing increases. An expedition to the ice shelf of the remote Pine Island Glacier, a major outlet of the West Antarctic Ice Sheet that has rapidly thinned and accelerated in recent decades, has been completed. Observations from geophysical surveys and long-term oceanographic instruments deployed down bore holes into the ocean cavity reveal a buoyancy-driven boundary layer within a basal channel that melts the channel apex by 0.06 meter per day, with near-zero melt rates along the flanks of the channel. A complex pattern of such channels is visible throughout the Pine Island Glacier shelf.

Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine

PubMed Central

Navascués, Miguel; Vaxevanidou, Zafeiro; González-Martínez, Santiago C; Climent, José; Gil, Luis; Emerson, Brent C

2006-01-01

Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied those methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonisation of the archipelago by the pine, while population expansions of different ages in different localities within an island appear to be the result of local extinctions and recolonisation dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. PMID:16911194

Nevada Monitoring System to Assess Climate Variability and Change

NASA Astrophysics Data System (ADS)

Devitt, D. A.; Arnone, J.; Biondi, F.; Fenstermaker, L. F.; Saito, L.; Young, M.; Riddle, B.; Strachan, S. D.; Bird, B.; McCurdy, G.; Lyles, B. F.

2010-12-01

The Nevada System of Higher Education (University of Nevada Las Vegas, University of Nevada Reno and the Desert Research Institute) was awarded a multiyear NSF EPSCoR grant to support infrastructure associated with regional climate change research. The overall project is comprised of 5 components: education, cyberinfrastructure, policy, climate modeling and water/ecology. The water and ecology components are using their infrastructure funding for the assessment of climate variability and change on ecosystem function and hydrologic services. A series of 10 m tall towers are under construction and are being equipped with a wide array of sensors to monitor atmospheric, soil and plant parameters over time. The towers are located within the Mojave and Great Basin Deserts in two transects; the Mojave Desert transect is located in the southern Nevada Sheep Mountain Range and the Great Basin transect is located in the east central Nevada Snake Mountain Range. The towers are centrally positioned in well-defined vegetation zones. In southern Nevada these zones are represented by the following plant species: Creosote/Bursage (Creosotebush scrub zone); Blackbrush/Joshua Tree (Blackbrush zone); Pinyon/ Juniper (pygmy conifer zone), Ponderosa Pine (montane zone) and Bristlecone Pine (subalpine zone). The Snake Mountain transect incorporates the eastern and western valleys on both sides of the mountain range. The vegetation zones are represented by: Greasewood and mixed shrub (salt desert zone); Big Sage (sagebrush zone); Pinyon/Juniper (pygmy conifer zone); White/Douglas Fir, Ponderosa Pine and Aspen (montane zone); and Bristlecone/Limber Pine and Engelmann Spruce (subalpine zone). We are currently in the third year of funding with a goal of having the majority of towers fully operational by winter 2010. In close collaboration with our cyberinfrastructure component team, all data acquired from the transect monitoring stations will be made available to other researchers and the public in Nevada and elsewhere, cooperating agencies and organizations, and State of Nevada land managers.

Pliocene transpressional modification of depositional basins by convergent thrusting adjacent to the "Big Bend" of the San Andreas fault: An example from Lockwood Valley, southern California

USGS Publications Warehouse

Kellogg, K.S.; Minor, S.A.

2005-01-01

The "Big Bend" of the San Andreas fault in the western Transverse Ranges of southern California is a left stepping flexure in the dextral fault system and has long been recognized as a zone of relatively high transpression compared to adjacent regions. The Lockwood Valley region, just south of the Big Bend, underwent a profound change in early Pliocene time (???5 Ma) from basin deposition to contraction, accompanied by widespread folding and thrusting. This change followed the recently determined initiation of opening of the northern Gulf of California and movement along the southern San Andreas fault at about 6.1 Ma, with the concomitant formation of the Big Bend. Lockwood Valley occupies a 6-km-wide, fault-bounded structural basin in which converging blocks of Paleoproterozoic and Cretaceous crystalline basement and upper Oligocene and lower Miocene sedimentary rocks (Plush Ranch Formation) were thrust over Miocene and Pliocene basin-fill sedimentary rocks (in ascending order, Caliente Formation, Lockwood Clay, and Quatal Formation). All the pre-Quatal sedimentary rocks and most of the Pliocene Quatal Formation were deposited during a mid-Tertiary period of regional transtension in a crustal block that underwent little clockwise vertical-axis rotation as compared to crustal blocks to the south. Ensuing Pliocene and Quaternary transpression in the Big Bend region began during deposition of the poorly dated Quatal Formation and was marked by four converging thrust systems, which decreased the areal extent of the sedimentary basin and formed the present Lockwood Valley structural basin. None of the thrusts appears presently active. Estimated shortening across the center of the basin was about 30 percent. The fortnerly defined eastern Big Pine fault, now interpreted to be two separate, oppositely directed, contractional reverse or thrust faults, marks the northwestern structural boundary of Lockwood Valley. The complex geometry of the Lockwood Valley basin is similar to other Tertiary structural basins in southern California, such those that underlie Cuyama Valley, the Ridge basin, and the east Ventura basin.

BigData as a Driver for Capacity Building in Astrophysics

NASA Astrophysics Data System (ADS)

Shastri, Prajval

2015-08-01

Exciting public interest in astrophysics acquires new significance in the era of Big Data. Since Big Data involves advanced technologies of both software and hardware, astrophysics with Big Data has the potential to inspire young minds with diverse inclinations - i.e., not just those attracted to physics but also those pursuing engineering careers. Digital technologies have become steadily cheaper, which can enable expansion of the Big Data user pool considerably, especially to communities that may not yet be in the astrophysics mainstream, but have high potential because of access to thesetechnologies. For success, however, capacity building at the early stages becomes key. The development of on-line pedagogical resources in astrophysics, astrostatistics, data-mining and data visualisation that are designed around the big facilities of the future can be an important effort that drives such capacity building, especially if facilitated by the IAU.

Research on the influencing factors of financing efficiency of big data industry based on panel data model--Empirical evidence from Guizhou province

NASA Astrophysics Data System (ADS)

Li, Chenggang; Feng, Yujia

2018-03-01

This paper mainly studies the influence factors of financing efficiency of Guizhou big data industry, and selects the financial and macro data of 20 Guizhou big data enterprises from 2010 to 2016. Using the DEA model to obtain the financing efficiency of Guizhou big data enterprises. A panel data model is constructed to select the six macro and micro influencing factors for panel data analysis. The results show that the external economic environment, the turnover rate of the total assets of the enterprises, the increase of operating income, the increase of the revenue per share of each share of the business income have positive impact on the financing efficiency of of the big data industry in Guizhou. The key to improve the financing efficiency of Guizhou big data enterprises is to improve.

Application and Prospect of Big Data in Water Resources

NASA Astrophysics Data System (ADS)

Xi, Danchi; Xu, Xinyi

2017-04-01

Because of developed information technology and affordable data storage, we h ave entered the era of data explosion. The term "Big Data" and technology relate s to it has been created and commonly applied in many fields. However, academic studies just got attention on Big Data application in water resources recently. As a result, water resource Big Data technology has not been fully developed. This paper introduces the concept of Big Data and its key technologies, including the Hadoop system and MapReduce. In addition, this paper focuses on the significance of applying the big data in water resources and summarizing prior researches by others. Most studies in this field only set up theoretical frame, but we define the "Water Big Data" and explain its tridimensional properties which are time dimension, spatial dimension and intelligent dimension. Based on HBase, the classification system of Water Big Data is introduced: hydrology data, ecology data and socio-economic data. Then after analyzing the challenges in water resources management, a series of solutions using Big Data technologies such as data mining and web crawler, are proposed. Finally, the prospect of applying big data in water resources is discussed, it can be predicted that as Big Data technology keeps developing, "3D" (Data Driven Decision) will be utilized more in water resources management in the future.

Big data uncertainties.

PubMed

Maugis, Pierre-André G

2018-07-01

Big data-the idea that an always-larger volume of information is being constantly recorded-suggests that new problems can now be subjected to scientific scrutiny. However, can classical statistical methods be used directly on big data? We analyze the problem by looking at two known pitfalls of big datasets. First, that they are biased, in the sense that they do not offer a complete view of the populations under consideration. Second, that they present a weak but pervasive level of dependence between all their components. In both cases we observe that the uncertainty of the conclusion obtained by statistical methods is increased when used on big data, either because of a systematic error (bias), or because of a larger degree of randomness (increased variance). We argue that the key challenge raised by big data is not only how to use big data to tackle new problems, but to develop tools and methods able to rigorously articulate the new risks therein. Copyright © 2016. Published by Elsevier Ltd.

Wyoming big sagebrush: Efforts towards development of target plants for restoration

Treesearch

Kayla R. Herriman

2009-01-01

Wyoming big sagebrush (Artemisia tridentata Nutt. ssp. wyomingensis) is a dominant shrub throughout much of the interior western United States. It is a key component of sagebrush steppe ecosystems, which have been degraded due to European settlement, improper land use, and changing fire regimes resulting from the invasion of exotic...

Big-Time Football Conferences Tried To Ignore Rule on Representation of Women.

ERIC Educational Resources Information Center

Naughton, Jim

1997-01-01

Controversy over limited representation of women on a key committee of the National Collegiate Athletic Association, the Division I Management Council, has renewed concerns that big-time football conferences are not committed to diverse membership on such panels. The division's board of directors rejected the first female nominees and suggested…

Recruiting, Training, and Retaining High-Performance Development Teams

ERIC Educational Resources Information Center

Elder, Stephen D.

2010-01-01

This chapter offers thoughts on some key elements of a high-performing development environment. The author describes how good development officers love to be part of something big, something that transforms a place and its people, and that thinking big is a powerful concept for development officers. He reminds development officers to be clear…

The changing model of big pharma: impact of key trends.

PubMed

Gautam, Ajay; Pan, Xiaogang

2016-03-01

Recent years have seen exciting breakthroughs in biomedical sciences that are producing truly novel therapeutics for unmet patient needs. However, the pharmaceutical industry is also facing significant barriers in the form of pricing and reimbursement, continued patent expirations and challenging market dynamics. In this article, we have analyzed data from the 1995-2015 period, on key aspects such as revenue distribution, research units, portfolio mix and emerging markets to identify four key trends that help to understand the change in strategic focus, realignment of R&D footprint, the shift from primary care toward specialty drugs and biologics and the growth of emerging markets as major revenue drivers for big pharma. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Asynchronous Object Storage with QoS for Scientific and Commercial Big Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brim, Michael J; Dillow, David A; Oral, H Sarp

2013-01-01

This paper presents our design for an asynchronous object storage system intended for use in scientific and commercial big data workloads. Use cases from the target workload do- mains are used to motivate the key abstractions used in the application programming interface (API). The architecture of the Scalable Object Store (SOS), a prototype object stor- age system that supports the API s facilities, is presented. The SOS serves as a vehicle for future research into scalable and resilient big data object storage. We briefly review our research into providing efficient storage servers capable of providing quality of service (QoS) contractsmore » relevant for big data use cases.« less

Big Data Bioinformatics

PubMed Central

GREENE, CASEY S.; TAN, JIE; UNG, MATTHEW; MOORE, JASON H.; CHENG, CHAO

2017-01-01

Recent technological advances allow for high throughput profiling of biological systems in a cost-efficient manner. The low cost of data generation is leading us to the “big data” era. The availability of big data provides unprecedented opportunities but also raises new challenges for data mining and analysis. In this review, we introduce key concepts in the analysis of big data, including both “machine learning” algorithms as well as “unsupervised” and “supervised” examples of each. We note packages for the R programming language that are available to perform machine learning analyses. In addition to programming based solutions, we review webservers that allow users with limited or no programming background to perform these analyses on large data compendia. PMID:27908398

Big Data Bioinformatics

PubMed Central

GREENE, CASEY S.; TAN, JIE; UNG, MATTHEW; MOORE, JASON H.; CHENG, CHAO

2017-01-01

Recent technological advances allow for high throughput profiling of biological systems in a cost-efficient manner. The low cost of data generation is leading us to the “big data” era. The availability of big data provides unprecedented opportunities but also raises new challenges for data mining and analysis. In this review, we introduce key concepts in the analysis of big data, including both “machine learning” algorithms as well as “unsupervised” and “supervised” examples of each. We note packages for the R programming language that are available to perform machine learning analyses. In addition to programming based solutions, we review webservers that allow users with limited or no programming background to perform these analyses on large data compendia. PMID:24799088

Big data bioinformatics.

PubMed

Greene, Casey S; Tan, Jie; Ung, Matthew; Moore, Jason H; Cheng, Chao

2014-12-01

Recent technological advances allow for high throughput profiling of biological systems in a cost-efficient manner. The low cost of data generation is leading us to the "big data" era. The availability of big data provides unprecedented opportunities but also raises new challenges for data mining and analysis. In this review, we introduce key concepts in the analysis of big data, including both "machine learning" algorithms as well as "unsupervised" and "supervised" examples of each. We note packages for the R programming language that are available to perform machine learning analyses. In addition to programming based solutions, we review webservers that allow users with limited or no programming background to perform these analyses on large data compendia. © 2014 Wiley Periodicals, Inc.

The Concept Lens Diagram: A New Mechanism for Presenting Biochemistry Content in Terms of "Big Ideas"

ERIC Educational Resources Information Center

Rowland, Susan L.; Smith, Christopher A.; Gillam, Elizabeth M. A.; Wright, Tony

2011-01-01

A strong, recent movement in tertiary education is the development of conceptual, or "big idea" teaching. The emphasis in course design is now on promoting key understandings, core competencies, and an understanding of connections between different fields. In biochemistry teaching, this radical shift from the content-based tradition is…

NASA EOSDIS Evolution in the BigData Era

NASA Technical Reports Server (NTRS)

Lynnes, Christopher

2015-01-01

NASA's EOSDIS system faces several challenges in the Big Data Era. Although volumes are large (but not unmanageably so), the variety of different data collections is daunting. That variety also brings with it a large and diverse user community. One key evolution EOSDIS is working toward is to enable more science analysis to be performed close to the data.

Putting the IT in Team

ERIC Educational Resources Information Center

Ravage, Barbara

2012-01-01

For better or worse, college sports are a big, big deal. But the value of sports on campus goes far beyond gate receipts, sponsorships, and TV revenues. Regardless of the size of a school, sports are a key element in spurring alumni giving and involvement; they play a major factor in helping prospective students select a college; and they help…

429th Brookhaven Lecture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robert P. Crease

2007-10-31

Robert P. Crease, historian for Brookhaven National Laboratory and Chair of the Philosophy Department at Stony Brook University, presents "How Big Science Came to Long Island: The Birth of Brookhaven Lab," covering the founding of the Laboratory, the key figures involved in starting BNL, and the many problems that had to be overcome in creating and designing its first big machines.

429th Brookhaven Lecture

ScienceCinema

Robert P. Crease

2017-12-09

Robert P. Crease, historian for Brookhaven National Laboratory and Chair of the Philosophy Department at Stony Brook University, presents "How Big Science Came to Long Island: The Birth of Brookhaven Lab," covering the founding of the Laboratory, the key figures involved in starting BNL, and the many problems that had to be overcome in creating and designing its first big machines.

Big Data and Nursing: Implications for the Future.

PubMed

Topaz, Maxim; Pruinelli, Lisiane

2017-01-01

Big data is becoming increasingly more prevalent and it affects the way nurses learn, practice, conduct research and develop policy. The discipline of nursing needs to maximize the benefits of big data to advance the vision of promoting human health and wellbeing. However, current practicing nurses, educators and nurse scientists often lack the required skills and competencies necessary for meaningful use of big data. Some of the key skills for further development include the ability to mine narrative and structured data for new care or outcome patterns, effective data visualization techniques, and further integration of nursing sensitive data into artificial intelligence systems for better clinical decision support. We provide growth-path vision recommendations for big data competencies for practicing nurses, nurse educators, researchers, and policy makers to help prepare the next generation of nurses and improve patient outcomes trough better quality connected health.

Identifying Hardwoods Growing on Pine Sites

Treesearch

Clair A. Brown; Harold E. Grelen

1977-01-01

This publication illustrates and describes 26 hardwood species or varieties, including 16 oaks and hickories with photographs of leaves, bark, buds, flowers, and fruits. Line drawings feature the winter silhouette of each species and a key is included to assist in identification.

Resources available for autism research in the big data era: a systematic review

PubMed Central

Milne, Elizabeth

2017-01-01

Recently, there has been a move encouraged by many stakeholders towards generating big, open data in many areas of research. One area where big, open data is particularly valuable is in research relating to complex heterogeneous disorders such as Autism Spectrum Disorder (ASD). The inconsistencies of findings and the great heterogeneity of ASD necessitate the use of big and open data to tackle important challenges such as understanding and defining the heterogeneity and potential subtypes of ASD. To this end, a number of initiatives have been established that aim to develop big and/or open data resources for autism research. In order to provide a useful data reference for autism researchers, a systematic search for ASD data resources was conducted using the Scopus database, the Google search engine, and the pages on ‘recommended repositories’ by key journals, and the findings were translated into a comprehensive list focused on ASD data. The aim of this review is to systematically search for all available ASD data resources providing the following data types: phenotypic, neuroimaging, human brain connectivity matrices, human brain statistical maps, biospecimens, and ASD participant recruitment. A total of 33 resources were found containing different types of data from varying numbers of participants. Description of the data available from each data resource, and links to each resource is provided. Moreover, key implications are addressed and underrepresented areas of data are identified. PMID:28097074

Reducing Racial Disparities in Breast Cancer Care: The Role of 'Big Data'.

PubMed

Reeder-Hayes, Katherine E; Troester, Melissa A; Meyer, Anne-Marie

2017-10-15

Advances in a wide array of scientific technologies have brought data of unprecedented volume and complexity into the oncology research space. These novel big data resources are applied across a variety of contexts-from health services research using data from insurance claims, cancer registries, and electronic health records, to deeper and broader genomic characterizations of disease. Several forms of big data show promise for improving our understanding of racial disparities in breast cancer, and for powering more intelligent and far-reaching interventions to close the racial gap in breast cancer survival. In this article we introduce several major types of big data used in breast cancer disparities research, highlight important findings to date, and discuss how big data may transform breast cancer disparities research in ways that lead to meaningful, lifesaving changes in breast cancer screening and treatment. We also discuss key challenges that may hinder progress in using big data for cancer disparities research and quality improvement.

Sources of Evidence-of-Learning: Learning and Assessment in the Era of Big Data

ERIC Educational Resources Information Center

Cope, Bill; Kalantzis, Mary

2015-01-01

This article sets out to explore a shift in the sources of evidence-of-learning in the era of networked computing. One of the key features of recent developments has been popularly characterized as "big data". We begin by examining, in general terms, the frame of reference of contemporary debates on machine intelligence and the role of…

Big questions, big science: meeting the challenges of global ecology

Treesearch

David Schimel; Michael Keller

2015-01-01

Ecologists are increasingly tackling questions that require significant infrastucture, large experiments, networks of observations, and complex data and computation. Key hypotheses in ecology increasingly require more investment, and larger data sets to be tested than can be collected by a single investigator’s or s group of investigator’s labs, sustained for longer...

From Sustainable Community to Big Society: 10 Years Learning with the Imagine Approach

ERIC Educational Resources Information Center

Bell, Simon

2011-01-01

Community is a key word in the current UK political vocabulary. As part of Big Society or as a sustainable means to develop social coherence, community has been an area of focus that has attained UK political party interest since 2003. In 1999, the Imagine method was first hinted at in the Earthscan book: "Sustainability Indicators: measuring…

Crustal strain near the Big Bend of the San Andreas Fault: analysis of the Los Padres-Tehachapi Trilateration Networks, California

USGS Publications Warehouse

Eberhart-Phillips, D.; Lisowski, M.

1990-01-01

In the region of the Los Padres-Tehachapi geodetic network, the San Andreas fault (SAF) changes its orientation by over 30?? from N40??W, close to that predicted by plate motion for a transform boundary, to N73??W. The strain orientation near the SAF is consistent with right-lateral shear along the fault, with maximum shear rate of 0.38??0.01??rad/yr at N63??W. In contrast, away from the SAF the strain orientations on both sides of the fault are consistent with the plate motion direction, with maximum shear rate of 0.19??0.01??rad/yr at N44??W. The best fitting Garlock fault model had computed left-lateral slip rate of 11??2mm/yr below 10km. Buried left-lateral slip of 15??6mm/yr on the Big Pine fault, within the Western Transverse Ranges, provides significant reduction in line length residuals; however, deformation there may be more complicated than a single vertical fault. A subhorizontal detachment on the southern side of the SAF cannot be well constrained by these data. -from Authors

EXAMINING MULTI-SCALE CHANGES IN FOREST FRAGMENTATION

EPA Science Inventory

Forest fragmentation is a key measurement of forest condition. In comparison to the Chesapeake Bay region, dominant forest loss in New Jersey was less sensitive to forest loss, which may be attributable the protected status of the New Jersey Pine Barrens.

[Empowerment of women in difficult life situations: the BIG project].

PubMed

Rütten, A; Röger, U; Abu-Omar, K; Frahsa, A

2008-12-01

BIG is a project for the promotion of physical activity among women in difficult life situations. Following the main health promotion principles of the WHO, the women shall be enabled or empowered to take control of determinants of their health. A comprehensive participatory approach was applied and women were included in planning, implementing and evaluating the project. For measuring the effects of BIG on the empowerment of participating women, qualitative semi-structured interviews with 15 women participating in BIG were conducted. For data analysis, qualitative content analysis was used. Results showed the empowerment of the women on the individual level as they gained different competencies and perceived self-efficacy. These effects were supported through the empowerment process on the organizational and community levels where women gained control over their life situations and over policies influencing them. Therefore, the participatory approach of BIG is a key success factor for empowerment promotion of women in difficult life situations.

NASA's Big Data Task Force

NASA Astrophysics Data System (ADS)

Holmes, C. P.; Kinter, J. L.; Beebe, R. F.; Feigelson, E.; Hurlburt, N. E.; Mentzel, C.; Smith, G.; Tino, C.; Walker, R. J.

2017-12-01

Two years ago NASA established the Ad Hoc Big Data Task Force (BDTF - https://science.nasa.gov/science-committee/subcommittees/big-data-task-force), an advisory working group with the NASA Advisory Council system. The scope of the Task Force included all NASA Big Data programs, projects, missions, and activities. The Task Force focused on such topics as exploring the existing and planned evolution of NASA's science data cyber-infrastructure that supports broad access to data repositories for NASA Science Mission Directorate missions; best practices within NASA, other Federal agencies, private industry and research institutions; and Federal initiatives related to big data and data access. The BDTF has completed its two-year term and produced several recommendations plus four white papers for NASA's Science Mission Directorate. This presentation will discuss the activities and results of the TF including summaries of key points from its focused study topics. The paper serves as an introduction to the papers following in this ESSI session.

Prevalence of Salmonella in Cashews, Hazelnuts, Macadamia Nuts, Pecans, Pine Nuts, and Walnuts in the United States.

PubMed

Zhang, Guodong; Hu, Lijun; Melka, David; Wang, Hua; Laasri, Anna; Brown, Eric W; Strain, Errol; Allard, Marc; Bunning, Vincent K; Musser, Steven M; Johnson, Rhoma; Santillana Farakos, Sofia; Scott, Virginia N; Pouillot, Régis; Doren, Jane M Van; Hammack, Thomas S

2017-03-01

Nuts have been identified as a vector for salmonellosis. The objective of this project was to estimate the prevalence and contamination level of Salmonella in raw tree nuts (cashews, pecans, hazelnuts, macadamia nuts, pine nuts, and walnuts) at retail markets in the United States. A total of 3,656 samples of six types of tree nuts were collected from different types of retail stores and markets nationwide between October 2014 and October 2015. These samples were analyzed using a modified version of the Salmonella culture method from the U.S. Food and Drug Administration's Bacteriological Analytical Manual. Of the 3,656 samples collected and tested, 32 were culturally confirmed as containing Salmonella. These isolates represented 25 serotypes. Salmonella was not detected in pecans and in-shell hazelnuts. Salmonella prevalence estimates (and 95% confidence intervals) in cashews, shelled hazelnuts, pine nuts, walnuts, and macadamia nuts were 0.55% [0.15, 1.40], 0.35% [0.04, 1.20], 0.48% [0.10, 1.40], 1.20% [0.53, 2.40], and 4.20% [2.40, 6.90], respectively. The rates of Salmonella isolation from major or big chain supermarkets, small chain supermarkets, discount, variety, or drug stores, and online were 0.64% [0.38, 1.00], 1.60% [0.80, 2.90], 0.00% [0.00, 2.40], and 13.64% [2.90, 35.00], respectively (Cochran-Mantel-Haenszel test: P = 0.02). The rates of Salmonella isolation for conventional and organic nuts were not significantly different. Of the samples containing Salmonella, 60.7% had levels less than 0.003 most probable number (MPN)/g. The highest contamination level observed was 0.092 MPN/g. The prevalence and levels of Salmonella in these tree nut samples were comparable to those previously reported for similar foods.

75 FR 7541 - Open Meeting of the Area 3 Taxpayer Advocacy Panel (Including the States of Florida, Georgia...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-19

..., or write TAP Office, 1000 South Pine Island Road, Suite 340, Plantation, FL 33324, or post comments... Late Notice: Due to inclement weather and Federal office closings in the District of Columbia, key TAP...

Impact of technical and technological changes on energy efficiency of production company - case study

NASA Astrophysics Data System (ADS)

Szwedzka, K.; Gruszka, J.; Szafer, P.

2016-08-01

Improving energy efficiency is one of the strategic objectives of the European Union for rational energy economy. To make efforts to improve energy efficiency have been obliged both small and large end-users. This article aims to show the possibilities of improving energy efficiency by introducing technical and technological process changes of pine lumber drying. The object of the research is process of drying lumber implemented in a production company, which is a key supplier of large furniture manufacturer. Pine lumber drying chamber consume about 45% of total electricity in sawmill. According to various sources, drying of 1m3 of lumber uses about 3060kWh and is dependent of inter alia: the drying process itself, the factors affecting the processing time and the desired output moisture content of the timber. The article proposals for changes in the process of drying lumber pine have been positively validated in the company, and as a result their energy consumption per 1 m3 of product declined by 18%.

The Keys to the White House

ERIC Educational Resources Information Center

Lichtman, Allan J.

2012-01-01

The Keys to the White House is a historically-based system for predicting the result of the popular vote in American presidential elections. The Keys system tracks the big picture of how well the party holding the White House has governed and does not shift with events of the campaign. This model gives specificity to the idea that it is…

Climate change and tree-line ecosystems in the Sierra Nevada: Habitat suitability modelling to inform high-elevation forest dynamics monitoring

USGS Publications Warehouse

Moore, Peggy E.; Alvarez, Otto; McKinney, Shawn T.; Li, Wenkai; Brooks, Matthew L.; Guo, Qinghua

2017-01-01

Whitebark pine and foxtail pine serve foundational roles in the subalpine zone of the Sierra Nevada. They provide the dominant structure in tree-line forests and regulate key ecosystem processes and community dynamics. Climate change models suggest that there will be changes in temperature regimes and in the timing and magnitude of precipitation within the current distribution of these species, and these changes may alter the species’ distributional limits. Other stressors include the non-native pathogen white pine blister rust and mountain pine beetle, which have played a role in the decline of whitebark pine throughout much of its range. The National Park Service is monitoring status and trends of these species. This report provides complementary information in the form of habitat suitability models to predict climate change impacts on the future distribution of these species within Sierra Nevada national parks.We used maximum entropy modeling to build habitat suitability models by relating species occurrence to environmental variables. Species occurrence was available from 328 locations for whitebark pine and 244 for foxtail pine across the species’ distributions within the parks. We constructed current climate surfaces for modeling by interpolating data from weather stations. Climate surfaces included mean, minimum, and maximum temperature and total precipitation for January, April, July, and October. We downscaled five general circulation models for the 2050s and the 2090s from ~125 km2 to 1 km2 under both an optimistic and an extreme climate scenario to bracket potential climatic change and its influence on projected suitable habitat. To describe anticipated changes in the distribution of suitable habitat, we compared, for each species, climate scenario, and time period, the current models with future models in terms of proportional change in habitat size, elevation distribution, model center points, and where habitat is predicted to expand or contract.Overall, models indicated that suitable habitats for whitebark and foxtail pine are more likely to shift geographically within the parks by 2100 rather than decline precipitously. This implies park managers might focus conservation efforts on stressors other than climate change, working toward species resilience in the face of threats from introduced disease and elevated native insect damage. More specifically, further understanding of the incidence and severity of white pine blister rust and other stressors in high elevation white pines would help assess vulnerability from threats other than climate change.

Translating the Science of Measuring Ecosystems at a National Scale: NEON's Online Learning Portal

NASA Astrophysics Data System (ADS)

Wasser, L. A.

2015-12-01

"Big Data" are becoming increasingly common in many fields. The National Ecological Observatory Network (NEON) will collect data over the 30 years, using consistent, standardized methods across the United States. These freely available new data provide an opportunity for increased understanding of continental- and global scale processes such as changes in vegetation structure and condition, biodiversity and landuse. However, while "big data" are becoming more accessible and available, working with big data is challenging. New and potentially unfamiliar data types and associated processing methods, required to work with a growing diversity of available data take time and resources to learn. Analysis of these big datasets may further present a challenge given large file sizes, and uncertainty regarding best methods to properly statistically summarize and analyze results. Finally, resources that support learning these concepts and approaches, are distributed widely across multiple online spaces and may take time to find. This presentation will overview the development of NEON's collaborative University-focused online education portal. It will also cover content testing, community feedback and results from workshops using online content. Portal content is hosted in github to facilitate community input, accessibility version control. Content includes 1) videos and supporting graphics that explain key concepts related to NEON and related big spatio-temporal and 2) data tutorials that include subsets of spatio-temporal data that can be used to learn key big data skills in a self-paced approach, or that can be used as a teaching tool in the classroom or in a workshop. All resources utilize free and open data processing, visualization and analysis tools, techniques and scripts. All NEON materials are being developed in collaboration with the scientific community and are being tested via in-person workshops. Visit the portal online: www.neondataskills.org.

75 FR 65230 - Drawbridge Operation Regulation; Arkansas Waterway, Pine Bluff, AR

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-22

... requesting a draw opening. This keying will activate an indicator on the remote drawbridge operator's console... operated. Vessels requesting an opening shall establish contact by radio/telephone with the remote... drawspan opening delays experienced previously from missed calls under the prior regulatory guidance...

Endangered plant-parrot mutualisms: seed tolerance to predation makes parrots pervasive dispersers of the Parana pine

PubMed Central

Tella, José L.; Dénes, Francisco V.; Zulian, Viviane; Prestes, Nêmora P.; Martínez, Jaime; Blanco, Guillermo; Hiraldo, Fernando

2016-01-01

Parrots are largely considered plant antagonists as they usually destroy the seeds they feed on. However, there is evidence that parrots may also act as seed dispersers. We evaluated the dual role of parrots as predators and dispersers of the Critically Endangered Parana pine (Araucaria angustifolia). Eight of nine parrot species predated seeds from 48% of 526 Parana pines surveyed. Observations of the commonest parrot indicated that 22.5% of the picked seeds were dispersed by carrying them in their beaks. Another five parrot species dispersed seeds, at an estimated average distance of c. 250 m. Dispersal distances did not differ from those observed in jays, considered the main avian dispersers. Contrary to jays, parrots often dropped partially eaten seeds. Most of these seeds were handled by parrots, and the proportion of partially eaten seeds that germinated was higher than that of undamaged seeds. This may be explained by a predator satiation effect, suggesting that the large seeds of the Parana pine evolved to attract consumers for dispersal. This represents a thus far overlooked key plant-parrot mutualism, in which both components are threatened with extinction. The interaction is becoming locally extinct long before the global extinction of the species involved. PMID:27546381

Endangered plant-parrot mutualisms: seed tolerance to predation makes parrots pervasive dispersers of the Parana pine.

PubMed

Tella, José L; Dénes, Francisco V; Zulian, Viviane; Prestes, Nêmora P; Martínez, Jaime; Blanco, Guillermo; Hiraldo, Fernando

2016-08-22

Parrots are largely considered plant antagonists as they usually destroy the seeds they feed on. However, there is evidence that parrots may also act as seed dispersers. We evaluated the dual role of parrots as predators and dispersers of the Critically Endangered Parana pine (Araucaria angustifolia). Eight of nine parrot species predated seeds from 48% of 526 Parana pines surveyed. Observations of the commonest parrot indicated that 22.5% of the picked seeds were dispersed by carrying them in their beaks. Another five parrot species dispersed seeds, at an estimated average distance of c. 250 m. Dispersal distances did not differ from those observed in jays, considered the main avian dispersers. Contrary to jays, parrots often dropped partially eaten seeds. Most of these seeds were handled by parrots, and the proportion of partially eaten seeds that germinated was higher than that of undamaged seeds. This may be explained by a predator satiation effect, suggesting that the large seeds of the Parana pine evolved to attract consumers for dispersal. This represents a thus far overlooked key plant-parrot mutualism, in which both components are threatened with extinction. The interaction is becoming locally extinct long before the global extinction of the species involved.

A preliminary investigation into the use of Red Pine (Pinus Resinosa) tree cores as historic passive samplers of POPs in outdoor air

NASA Astrophysics Data System (ADS)

Rauert, Cassandra; Harner, Tom

2016-09-01

The suitability of Red Pine trees (Pinus Resinosa) to act as passive samplers for persistent organic pollutants (POPs) in outdoor air and to provide historic information on air concentration trends was demonstrated in this preliminary investigation. Red Pine tree cores from Toronto, Canada, were tested for polycyclic aromatic hydrocarbon (PAHs), alkylated-PAHs, nitro and oxy-PAHs, polybrominated diphenyl ethers (PBDEs) and novel brominated flame retardants (novel BFRs). The PBDEs and novel BFRs demonstrated a similar relative contribution in cores representing 30 years of tree growth, to that reported in contemporary air samples. Analysis of tree ring segments of 5-15 years resulted in detectable concentrations of some PAHs and alk-PAHs and demonstrated a transition from petrogenic sources to pyrogenic sources over the period 1960-2015. A simple uptake model was developed that treats the tree rings as linear-phase passive air samplers. The bark infiltration factor, IFBARK, is a key parameter of the model that reflects the permeability of the bark to allow chemicals to be transferred from ambient air to the outer tree layer (cambium). An IFBARK of about 2% was derived for the Red Pine trees based on tree core and air monitoring data.

A practical guide to big data research in psychology.

PubMed

Chen, Eric Evan; Wojcik, Sean P

2016-12-01

The massive volume of data that now covers a wide variety of human behaviors offers researchers in psychology an unprecedented opportunity to conduct innovative theory- and data-driven field research. This article is a practical guide to conducting big data research, covering data management, acquisition, processing, and analytics (including key supervised and unsupervised learning data mining methods). It is accompanied by walkthrough tutorials on data acquisition, text analysis with latent Dirichlet allocation topic modeling, and classification with support vector machines. Big data practitioners in academia, industry, and the community have built a comprehensive base of tools and knowledge that makes big data research accessible to researchers in a broad range of fields. However, big data research does require knowledge of software programming and a different analytical mindset. For those willing to acquire the requisite skills, innovative analyses of unexpected or previously untapped data sources can offer fresh ways to develop, test, and extend theories. When conducted with care and respect, big data research can become an essential complement to traditional research. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

How Does National Scientific Funding Support Emerging Interdisciplinary Research: A Comparison Study of Big Data Research in the US and China

PubMed Central

Huang, Ying; Zhang, Yi; Youtie, Jan; Porter, Alan L.; Wang, Xuefeng

2016-01-01

How do funding agencies ramp-up their capabilities to support research in a rapidly emerging area? This paper addresses this question through a comparison of research proposals awarded by the US National Science Foundation (NSF) and the National Natural Science Foundation of China (NSFC) in the field of Big Data. Big data is characterized by its size and difficulties in capturing, curating, managing and processing it in reasonable periods of time. Although Big Data has its legacy in longstanding information technology research, the field grew very rapidly over a short period. We find that the extent of interdisciplinarity is a key aspect in how these funding agencies address the rise of Big Data. Our results show that both agencies have been able to marshal funding to support Big Data research in multiple areas, but the NSF relies to a greater extent on multi-program funding from different fields. We discuss how these interdisciplinary approaches reflect the research hot-spots and innovation pathways in these two countries. PMID:27219466

How Does National Scientific Funding Support Emerging Interdisciplinary Research: A Comparison Study of Big Data Research in the US and China.

PubMed

Huang, Ying; Zhang, Yi; Youtie, Jan; Porter, Alan L; Wang, Xuefeng

2016-01-01

How do funding agencies ramp-up their capabilities to support research in a rapidly emerging area? This paper addresses this question through a comparison of research proposals awarded by the US National Science Foundation (NSF) and the National Natural Science Foundation of China (NSFC) in the field of Big Data. Big data is characterized by its size and difficulties in capturing, curating, managing and processing it in reasonable periods of time. Although Big Data has its legacy in longstanding information technology research, the field grew very rapidly over a short period. We find that the extent of interdisciplinarity is a key aspect in how these funding agencies address the rise of Big Data. Our results show that both agencies have been able to marshal funding to support Big Data research in multiple areas, but the NSF relies to a greater extent on multi-program funding from different fields. We discuss how these interdisciplinary approaches reflect the research hot-spots and innovation pathways in these two countries.

Flexible displays as key for high-value and unique automotive design

NASA Astrophysics Data System (ADS)

Isele, Robert

2011-03-01

Within the last few years' car industry changed very fast. Information and Communication became more important and displays are now standard in nearly every car. But this is not the only trend which could be recognized in this industry. CO2 emission, fuel price as well as the increasing traffic inside the Mega Cities initialized a big change in the behavior of the customers. The big battle for the car industry will enter the interior extremely fast, and the premium cars need ore innovative design icons. Flexible Displays are one big step that enables totally different designs and a new value of the driver experience.

Uneven-aged silviculture, southern style

Treesearch

James M. Guldin; James B. Baker

1998-01-01

Data spanning 60 years on uneven-aged loblolly-shortleaf pine stands in Arkansas show that two regulation methods have been successful in regulating stand development. Key attributes of these methods are that regulation is more important than balance, residual basal area drives stand development, and regeneration is the first indicator of sustainability. Marking uneven...

Predicting the distribution of a novel bark beetle and its pine hosts under future climate conditions

Treesearch

Steven E. Smith; Ma.G. Mendoza; Gerardo Zuniga; Kandres Kalbrook; J.L. Hayes; D.N. Byrne

2013-01-01

Understanding the distribution of key biotic elements of forest ecosystems is essential in contemporary forest management and in planning to meet future management needs. Habitat distribution (niche) models based on known occurrences provide geographical structure for such management as the environmental factors change....

Financial return from traditional wood products, feedstock, and carbon sequestration in loblolly pine plantations in the Southern U.S

Treesearch

Umesh K. Chaudhan; Michael B. Kane

2015-01-01

We know that planting trees is a key approach for mitigating climate change; however, we are uncertain of what planting density per unit of land and what cultural regimes are needed to optimize traditional timber products, feedstock, and carbon sequestration.

Restoring Aristida stricta to Pinus palustris ecosystems on the Atlantic Coastal Plain, U.S.A.

Treesearch

Kenneth W. Outcalt; Marcus E. Williams; Oghenekome Onokpise

1999-01-01

Aristida stricta (wiregrass), a perennial bunchgrass, quickly accumulates dead leaves, which along with the shed needles of Pinus palustris (longleaf pine) provide the fuel for frequent surface fires. Thus, historically, wiregrass played a key role in many longleaf communities where it significantly...

Combining state-and-transition simulations and species distribution models to anticipate the effects of climate change

USGS Publications Warehouse

Miller, Brian W.; Frid, Leonardo; Chang, Tony; Piekielek, N. B.; Hansen, Andrew J.; Morisette, Jeffrey T.

2015-01-01

State-and-transition simulation models (STSMs) are known for their ability to explore the combined effects of multiple disturbances, ecological dynamics, and management actions on vegetation. However, integrating the additional impacts of climate change into STSMs remains a challenge. We address this challenge by combining an STSM with species distribution modeling (SDM). SDMs estimate the probability of occurrence of a given species based on observed presence and absence locations as well as environmental and climatic covariates. Thus, in order to account for changes in habitat suitability due to climate change, we used SDM to generate continuous surfaces of species occurrence probabilities. These data were imported into ST-Sim, an STSM platform, where they dictated the probability of each cell transitioning between alternate potential vegetation types at each time step. The STSM was parameterized to capture additional processes of vegetation growth and disturbance that are relevant to a keystone species in the Greater Yellowstone Ecosystem—whitebark pine (Pinus albicaulis). We compared historical model runs against historical observations of whitebark pine and a key disturbance agent (mountain pine beetle, Dendroctonus ponderosae), and then projected the simulation into the future. Using this combination of correlative and stochastic simulation models, we were able to reproduce historical observations and identify key data gaps. Results indicated that SDMs and STSMs are complementary tools, and combining them is an effective way to account for the anticipated impacts of climate change, biotic interactions, and disturbances, while also allowing for the exploration of management options.

Direct Self-Sustained Fragmentation Cascade of Reactive Droplets

NASA Astrophysics Data System (ADS)

Inoue, Chihiro; Izato, Yu-ichiro; Miyake, Atsumi; Villermaux, Emmanuel

2017-02-01

A traditional hand-held firework generates light streaks similar to branched pine needles, with ever smaller ramifications. These streaks are the trajectories of incandescent reactive liquid droplets bursting from a melted powder. We have uncovered the detailed sequence of events, which involve a chemical reaction with the oxygen of air, thermal decomposition of metastable compounds in the melt, gas bubble nucleation and bursting, liquid ligaments and droplets formation, all occurring in a sequential fashion. We have also evidenced a rare instance in nature of a spontaneous fragmentation process involving a direct cascade from big to smaller droplets. Here, the self-sustained direct cascade is shown to proceed over up to eight generations, with well-defined time and length scales, thus answering a century old question, and enriching, with a new example, the phenomenology of comminution.

Identifying key climate and environmental factors affecting rates of post-fire big sagebrush (Artemisia tridentata) recovery in the northern Columbia Basin, USA

USGS Publications Warehouse

Shinneman, Douglas; McIlroy, Susan

2016-01-01

Sagebrush steppe of North America is considered highly imperilled, in part owing to increased fire frequency. Sagebrush ecosystems support numerous species, and it is important to understand those factors that affect rates of post-fire sagebrush recovery. We explored recovery of Wyoming big sagebrush (Artemisia tridentata ssp.wyomingensis) and basin big sagebrush (A. tridentata ssp. tridentata) communities following fire in the northern Columbia Basin (Washington, USA). We sampled plots across 16 fires that burned in big sagebrush communities from 5 to 28 years ago, and also sampled nearby unburned locations. Mixed-effects models demonstrated that density of large–mature big sagebrush plants and percentage cover of big sagebrush were higher with time since fire and in plots with more precipitation during the winter immediately following fire, but were lower when precipitation the next winter was higher than average, especially on soils with higher available water supply, and with greater post-fire mortality of mature big sagebrush plants. Bunchgrass cover 5 to 28 years after fire was predicted to be lower with higher cover of both shrubs and non-native herbaceous species, and only slightly higher with time. Post-fire recovery of big sagebrush in the northern Columbia Basin is a slow process that may require several decades on average, but faster recovery rates may occur under specific site and climate conditions.

Fuel loads, fire regimes, and post-fire fuel dynamics in Florida Keys pine forests

USGS Publications Warehouse

Sah, J.P.; Ross, M.S.; Snyder, J.R.; Koptur, S.; Cooley, H.C.

2006-01-01

In forests, the effects of different life forms on fire behavior may vary depending on their contributions to total fuel loads. We examined the distribution of fuel components before fire, their effects on fire behavior, and the effects of fire on subsequent fuel recovery in pine forests within the National Key Deer Refuge in the Florida Keys. We conducted a burning experiment in six blocks, within each of which we assigned 1-ha plots to three treatments: control, summer, and winter burn. Owing to logistical constraints, we burned only 11 plots, three in winter and eight in summer, over a 4-year period from 1998 to 2001. We used path analysis to model the effects of fuel type and char height, an indicator of fire intensity, on fuel consumption. Fire intensity increased with surface fuel loads, but was negatively related to the quantity of hardwood shrub fuels, probably because these fuels are associated with a moist microenvironment within hardwood patches, and therefore tend to resist fire. Winter fires were milder than summer fires, and were less effective at inhibiting shrub encroachment. A mixed seasonal approach is suggested for fire management, with burns applied opportunistically under a range of winter and summer conditions, but more frequently than that prevalent in the recent past. ?? IAWF 2006.

Translating the Science of Measuring Ecosystems at a National Scale: Developing NEON's Online Learning Portal

NASA Astrophysics Data System (ADS)

Wasser, L. A.; Gram, W.; Goehring, L.

2014-12-01

"Big Data" are becoming increasingly common in many fields. The National Ecological Observatory Network (NEON) will be collecting data over the 30 years, using consistent, standardized methods across the United States. These freely available new data provide an opportunity for increased understanding of continental- and global scale processes such as changes in vegetation structure and condition, biodiversity and landuse. However, while "big data" are becoming more accessible and available, integrating big data into the university courses is challenging. New and potentially unfamiliar data types and associated processing methods, required to work with a growing diversity of available data, may warrant time and resources that present a barrier to classroom integration. Analysis of these big datasets may further present a challenge given large file sizes, and uncertainty regarding best methods to properly statistically summarize and analyze results. Finally, teaching resources, in the form of demonstrative illustrations, and other supporting media that might help teach key data concepts, take time to find and more time to develop. Available resources are often spread widely across multi-online spaces. This presentation will overview the development of NEON's collaborative University-focused online education portal. Portal content will include 1) videos and supporting graphics that explain key concepts related to NEON data products including collection methods, key metadata to consider and consideration of potential error and uncertainty surrounding data analysis; and 2) packaged "lab" activities that include supporting data to be used in an ecology, biology or earth science classroom. To facilitate broad use in classrooms, lab activities will take advantage of freely and commonly available processing tools, techniques and scripts. All NEON materials are being developed in collaboration with existing labs and organizations.

Mineral resource potential map of the Dolly Ann Roadless Area, Alleghany County, Virginia

USGS Publications Warehouse

Lesure, Frank G.; Jones, Jay G.

1983-01-01

The Dolly Ann Roadless Area comprises 7,900 acres (3,200 ha) in the George Washington National Forest in the Valley and Ridge physiographic province of west-central Virginia. The area is at the southern ·end of Warm Springs Mountain in Alleghany County just northeast of Covington, the county seat (index map). U.S. Highway 220 forms part of the western boundary, and U.S. Forest Service Road 125, which parallels Pounding Mill Creek, forms the eastern boundary. The principal streams draining the area are Pounding Mill Creek, Dry Run, and Roaring Run, all tributaries of the Jackson River. The highest point in the area is Big Knob at the north end, 4,072 ft (1241 m) above sea level; the lowest points, about 1,400 ft (427 m) above sea level, are at the south side, along Dry Run and Pounding Mill Creek. In general, the hill slopes are steep and heavily wooded with second- or third-growth hardwoods and scattered pine and hemlock. Dolly Ann Hollow near the east end of the area is a steep, boulder-strewn gorge, quite picturesque, but containing no good trails. A good trail up Dry Run connects a trail crossing the ridge between Bald Knob and Big Knob. No other trails cross the area.

Investigating spatial variability in gas-flux dynamics within Big Cypress National Preserve, Florida using hydrogeophysical methods

NASA Astrophysics Data System (ADS)

Sirianni, M.; Comas, X.; Shoemaker, B.; Job, M. J.; Cooper, H.

2016-12-01

Globally, wetland soils play an important role in regulating climate change by functioning as a source or sink for atmospheric carbon, particularly in terms of methane and carbon dioxide. While many historic studies defined the function of wetland soils in the global carbon budget, the gas-flux dynamics of subtropical wetlands is largely unknown. Big Cypress National Preserve is a collection of subtropical wetlands in southwestern Florida, including extensive forested (cypress, pine, hardwood) and sawgrass ecosystems that dry and flood annually in response to rainfall. The U.S. Geological Survey employs eddy covariance methods at several locations within the Preserve to quantify carbon and methane exchanges at ecosystem scales. While eddy covariance towers are a convenient tool for measuring gas fluxes, their footprint is spatially extensive (hundreds of meters); and thus spatial variability at smaller scales is masked by averaging or even overlooked. We intend to estimate small-scale contributions of organic and calcitic soils to gas exchanges measured by the eddy covariance towers using a combination of geophysical, hydrologic and ecologic techniques. Preliminary results suggest that gas releases from flooded calcitic soils are much greater than organic soils. These results - and others - will help build a better understanding of the role of subtropical wetlands in the global carbon budget.

Seed release in serotinous lodgepole pine forests after mountain pine beetle outbreak.

PubMed

Teste, François P; Lieffers, Victor J; Landhausser, Simon M

2011-01-01

There are concerns that large-scale stand mortality due to mountain pine beetle (MPB) could greatly reduce natural regeneration of serotinous Rocky Mountain (RM) lodgepole pine (Pinus contorta var. latifolia) because the closed cones are held in place without the fire cue for cone opening. We selected 20 stands (five stands each of live [control], 3 years since MPB [3-yr-MPB], 6 years since MPB [6-yr-MPB], and 9 years since MPB [9-yr-MPB] mortality) in north central British Columbia, Canada. The goal was to determine partial loss of serotiny due to fall of crown-stored cones via breakage of branches and in situ opening of canopy cones throughout the 2008 and 2009 growing seasons. We also quantified seed release by the opening of forest-floor cones, loss of seed from rodent predation, and cone burial. Trees killed by MPB three years earlier dropped approximately 3.5 times more cones via branch breakage compared to live stands. After six years, MPB-killed stands had released 45% of their canopy seed bank through cone opening, cone fall due to breakage, and squirrel predation. Further losses of canopy seed banks are expected with time since we found 9-yr-MPB stands had 38% more open canopy cones. This was countered by the development of a modest forest-floor seed bank (6% of the original canopy seed bank) from burial of cones; this seed bank may be ecologically important if a fire or anthropogenic disturbance reexposes these cones. If adequate levels of regeneration are to occur, disturbances to create seedbeds must occur shortly after tree mortality, before the seed banks are lost. Our findings also suggest that the sustained seed rain (over at least nine years) after MPB outbreak may be beneficial for population growth of ground-foraging vertebrates. Our study adds insight to the seed ecology of serotinous pines under a potentially continental-wide insect outbreak, threatening vast forests adapted to regeneration after fire. Key words: biotic disturbance; cone burial; cone opening; Dendroctonus ponderosae; ground-foraging vertebrates; mountain pine beetle; natural regeneration; Pinus contorta var. latifolia; Rocky Mountain lodgepole pine; seed banks; serotiny (canopy seed storage); Tamiasciurus hudsonicus.

A stochastic model of tree architecture and biomass partitioning: application to Mongolian Scots pines

PubMed Central

Wang, Feng; Kang, Mengzhen; Lu, Qi; Letort, Véronique; Han, Hui; Guo, Yan; de Reffye, Philippe; Li, Baoguo

2011-01-01

Background and Aims Mongolian Scots pine (Pinus sylvestris var. mongolica) is one of the principal species used for windbreak and sand stabilization in arid and semi-arid areas in northern China. A model-assisted analysis of its canopy architectural development and functions is valuable for better understanding its behaviour and roles in fragile ecosystems. However, due to the intrinsic complexity and variability of trees, the parametric identification of such models is currently a major obstacle to their evaluation and their validation with respect to real data. The aim of this paper was to present the mathematical framework of a stochastic functional–structural model (GL2) and its parameterization for Mongolian Scots pines, taking into account inter-plant variability in terms of topological development and biomass partitioning. Methods In GL2, plant organogenesis is determined by the realization of random variables representing the behaviour of axillary or apical buds. The associated probabilities are calibrated for Mongolian Scots pines using experimental data including means and variances of the numbers of organs per plant in each order-based class. The functional part of the model relies on the principles of source–sink regulation and is parameterized by direct observations of living trees and the inversion method using measured data for organ mass and dimensions. Key Results The final calibration accuracy satisfies both organogenetic and morphogenetic processes. Our hypothesis for the number of organs following a binomial distribution is found to be consistent with the real data. Based on the calibrated parameters, stochastic simulations of the growth of Mongolian Scots pines in plantations are generated by the Monte Carlo method, allowing analysis of the inter-individual variability of the number of organs and biomass partitioning. Three-dimensional (3D) architectures of young Mongolian Scots pines were simulated for 4-, 6- and 8-year-old trees. Conclusions This work provides a new method for characterizing tree structures and biomass allocation that can be used to build a 3D virtual Mongolian Scots pine forest. The work paves the way for bridging the gap between a single-plant model and a stand model. PMID:21062760

Beyond Moore's Law: Harnessing spatial-digital disruptive technologies for Digital Earth

NASA Astrophysics Data System (ADS)

Foresman, Timothy W.

2016-11-01

Moore's law will reach its plateau by 2020. Big data, however, will continue to increase as the Internet of Things and social media converge into the new era of ‘huge data’. Disruptive technologies, including big data and cloud computing are forces impacting business and government communities. The truth of our collective future is suggested to align with the Digital Earth (DE) vision. Benefits of technological advances will be manifested from business performance improvements based on capitalizing the locational attributes of corporate and government assets - the foundation of big data. Better governance and better business represents a key foundation for sustainability and therefore should be explicit DE guiding principles.

An ecological mechanism to create regular patterns of surface dissolution in a low-relief carbonate landscape

NASA Astrophysics Data System (ADS)

Cohen, M. J.; Martin, J. B.; Mclaughlin, D. L.; Osborne, T.; Murray, A.; Watts, A. C.; Watts, D.; Heffernan, J. B.

2012-12-01

Development of karst landscapes is controlled by focused delivery of water undersaturated with respect to the soluble rock minerals. As that water comes to equilibrium with the rock, secondary porosity is incrementally reinforced creating a positive feedback that acts to augment the drainage network and subsequent water delivery. In most self-organizing systems, spatial positive feedbacks create features (in landscapes: patches; in karst aquifers: conduits) whose size-frequency relationship follows a power function, indicating a higher probability of large features than would occur with a random or Gaussian genesis process. Power functions describe several aspects of secondary porosity in the Upper Floridan Aquifer in north Florida. In contrast, a different pattern arises in the karst landscape in southwest Florida (Big Cypress National Preserve; BICY), where low-relief and a shallow aquiclude govern regional hydrology. There, the landscape pattern is highly regular (Fig. 1), with circular cypress-dominated wetlands occupying depressions that are hydrologically isolated and distributed evenly in a matrix of pine uplands. Regular landscape patterning results from spatially coupled feedbacks, one positive operating locally that expands patches coupled to another negative that operates at distance, eventually inhibiting patch expansion. The positive feedback in BICY is thought to derive from the presence of surface depressions, which sustain prolonged inundation in this low-relief setting, and facilitate wetland development that greatly augments dissolution potential of infiltrating water in response to ecosystem metabolic processes. In short, wetlands "drill" into the carbonate leading to both vertical and lateral basin expansion. Wetland expansion occurs at the expense of surrounding upland area, which is the local catchment that subsidizes water availability. A distal inhibitory feedback on basin expansion thus occurs as the water necessary to sustain prolonged inundation becomes limiting. The implied strong reciprocal coupling between surface production of organic matter and patterns of induced subsurface carbonate dissolution are a novel example of co-evolving biogeomorphic processes in the earth system. Fig. 1 - Regular patterned landscape in Big Cypress National Preserve showing cypress dominated wetlands (round features) embedded in a mosaic of pine and grass uplands. Exposed carbonate rings are evident at the margins of many of the wetland basins.

[Understanding the symbolic values of Japanese onomatopoeia: comparison of Japanese and Chinese speakers].

PubMed

Haryu, Etsuko; Zhao, Lihua

2007-10-01

Do non-native speakers of the Japanese language understand the symbolic values of Japanese onomatopoeia matching a voiced/unvoiced consonant with a big/small sound made by a big/small object? In three experiments, participants who were native speakers of Japanese, Japanese-learning Chinese, or Chinese without knowledge of the Japanese language were shown two pictures. One picture was of a small object making a small sound, such as a small vase being broken, and the other was of a big object making a big sound, such as a big vase being broken. Participants were presented with two novel onomatopoetic words with voicing contrasts, e.g.,/dachan/vs./tachan/, and were told that each word corresponded to one of the two pictures. They were then asked to match the words to the corresponding pictures. Chinese without knowledge of Japanese performed only at chance level, whereas Japanese and Japanese-learning Chinese successfully matched a voiced/unvoiced consonant with a big/small object respectively. The results suggest that the key to understanding the symbolic values of voicing contrasts in Japanese onomatopoeia is some basic knowledge that is intrinsic to the Japanese language.

Know your limits? Climate extremes impact the range of Scots pine in unexpected places

PubMed Central

Julio Camarero, J.; Gazol, Antonio; Sancho-Benages, Santiago; Sangüesa-Barreda, Gabriel

2015-01-01

Background and Aims Although extreme climatic events such as drought are known to modify forest dynamics by triggering tree dieback, the impact of extreme cold events, especially at the low-latitude margin (‘rear edge’) of species distributional ranges, has received little attention. The aim of this study was to examine the impact of one such extreme cold event on a population of Scots pine (Pinus sylvestris) along the species’ European southern rear-edge range limit and to determine how such events can be incorporated into species distribution models (SDMs). Methods A combination of dendrochronology and field observation was used to quantify how an extreme cold event in 2001 in eastern Spain affected growth, needle loss and mortality of Scots pine. Long-term European climatic data sets were used to contextualize the severity of the 2001 event, and an SDM for Scots pine in Europe was used to predict climatic range limits. Key Results The 2001 winter reached record minimum temperatures (equivalent to the maximum European-wide diurnal ranges) and, for trees already stressed by a preceding dry summer and autumn, this caused dieback and large-scale mortality. Needle loss and mortality were particularly evident in south-facing sites, where post-event recovery was greatly reduced. The SDM predicted European Scots pine distribution mainly on the basis of responses to maximum and minimum monthly temperatures, but in comparison with this the observed effects of the 2001 cold event at the southerly edge of the range limit were unforeseen. Conclusions The results suggest that in order to better forecast how anthropogenic climate change might affect future forest distributions, distribution modelling techniques such as SDMs must incorporate climatic extremes. For Scots pine, this study shows that the effects of cold extremes should be included across the entire distribution margin, including the southern ‘rear edge’, in order to avoid biased predictions based solely on warmer climatic scenarios. PMID:26292992

Tree ecophysiology research at Taylor Woods

Treesearch

Thomas E. Kolb; Nate G. McDowell

2008-01-01

We summarize the key findings of tree ecophysiology studies performed at Taylor Woods, Fort Valley Experimental Forest, Arizona between 1994 and 2003 that provide unique insight on impacts of long-term stand density management in ponderosa pine forests on tree water relations, leaf gas exchange, radial growth, leaf area-to-sapwood-area ratio, growth efficiency, leaf...

Testing DRAINMOD-FOREST for predicting evapotranspiration in a mid-rotation pine plantation

Treesearch

Shiying Tian; Mohamed A. Youssef; Ge Sun; George M. Chescheir; Asko Noormets; Devendra M. Amatya; R. Wayne Skaggs; John S. King; Steve McNulty; Michael Gavazzi; Guofang Miao; Jean-Christophe Domec

2015-01-01

Evapotranspiration (ET) is a key component of the hydrologic cycle in terrestrial ecosystems and accurate description of ET processes is essential for developing reliable ecohydrological models. This study investigated the accuracy of ET prediction by the DRAINMOD-FOREST after its calibration/validation for predicting commonly measured hydrological variables. The model...

A Whole Pine Tree Substrate for Rooting Stem Cuttings of Ornamental Crops

USDA-ARS?s Scientific Manuscript database

In 2006, propagative material accounted for $725 million (8.3%) of the total wholesale value for the nursery and floriculture industries nationwide. Despite a 10% increase in total value from 2003-2006, rising fuel and input costs have reduced profitability for producers. A key component of a propag...

Schools and Society: A Sociological Approach to Education, Third Edition

ERIC Educational Resources Information Center

Ballantine, Jeanne H., Ed.; Spade, Joan Z., Ed.

2007-01-01

This third edition, now published by Pine Forge Press, features original readings and article excerpts by leaders in the area of Sociology of Education. With a wide array of theoretical perspectives, a broad range of respected sources, and inclusion of both classic and contemporary studies, this comprehensive, integrated text addresses key issues…

Comparison of Growth Efficiency of Mature Longleaf and Slash Pine Trees

Treesearch

Steven B. Jack; Mary Carol P. Sheffield; Daniel J. McConville

2002-01-01

Variation in aboveground biomass partitioning (between the stem, branches, and foliage) of mature trees is a key determinant of growth potential. Investment of photosynthate in crown components generally results in greater overall biomass production of longer duration. The increased production of crown components may be an investment in longterm aboveground production...

Water Quality in the Production of Containerized Longleaf Pine Seedlings

Treesearch

David J. Moorhead; John M. Ruter

2002-01-01

The consistent production of quality container grown seedlings requires that key production variables be identified and controlled; otherwise, quality and the percentage of marketable plants will be erratic (Garber and Ruter 1993a). Additionally, production times and costs may increase unless production variables are monitored and managed throughout the production...

The veA gene of the pine needle pathogen Dothistroma septosporum regulates sporulation and secondary metabolism

USDA-ARS?s Scientific Manuscript database

Fungi possess genetic systems to regulate the expression of genes involved in complex processes such as development and secondary metabolite biosynthesis. The product of the velvet gene veA, first identified and characterized in Aspergillus nidulans, is a key player in the regulation of both of thes...

"Growing trees backwards": Description of a stand reconstruction model (P-53)

Treesearch

Jonathan D. Bakker; Andrew J. Sanchez Meador; Peter Z. Fule; David W. Huffman; Margaret M. Moore

2008-01-01

We describe an individual-tree model that uses contemporary measurements to "grow trees backward" and reconstruct past tree diameters and stand structure in ponderosa pine dominated stands of the Southwest. Model inputs are contemporary structural measurements of all snags, logs, stumps, and living trees, and radial growth measurements, if available. Key...

"Growing trees backwards": Description of a stand reconstruction model

Treesearch

Jonathan D. Bakker; Andrew J. Sanchez Meador; Peter Z. Fule; David W. Huffman; Margaret M. Moore

2008-01-01

We describe an individual-tree model that uses contemporary measurements to "grow trees backward" and reconstruct past tree diameters and stand structure in ponderosa pine dominated stands of the Southwest. Model inputs are contemporary structural measurements of all snags, logs, stumps, and living trees, and radial growth measurements, if available. Key...

Webinar summary: Important findings for managers [Chapter 2

Treesearch

Claudia Regan

2014-01-01

This chapter summarizes key findings and offers take-home messages of the Future Forest Webinar Series with regard to resource management planning, analyses, and project design. In the wake of the mountain pine beetle (MPB) epidemic, resource managers are especially concerned with developing more resilient forests, providing for the sustainability of wildlife and fish...

Meet your new president

Treesearch

M. E. Makie

1972-01-01

Utilization is a key word in Peter Koch's vocabulary-it's the first word in his soon-to-be-published book, Utilization of the Southern Pines; it's the motivation behind his striving to get the FPRS information retrieval project in working order; and it's the way he enjoys his free time activities (to the fullest). After the 26th...

Bi-directional exchange of ammonia in a pine forest ecosystem - a model sensitivity analysis

NASA Astrophysics Data System (ADS)

Moravek, Alexander; Hrdina, Amy; Murphy, Jennifer

2016-04-01

Ammonia (NH3) is a key component in the global nitrogen cycle and of great importance for atmospheric chemistry, neutralizing atmospheric acids and leading to the formation of aerosol particles. For understanding the role of NH3 in both natural and anthropogenically influenced environments, the knowledge of processes regulating its exchange between ecosystems and the atmosphere is essential. A two-layer canopy compensation point model is used to evaluate the NH3 exchange in a pine forest in the Colorado Rocky Mountains. The net flux comprises the NH3 exchange of leaf stomata, its deposition to leaf cuticles and exchange with the forest ground. As key parameters the model uses in-canopy NH3 mixing ratios as well as leaf and soil emission potentials measured at the site in summer 2015. A sensitivity analysis is performed to evaluate the major exchange pathways as well as the model's constraints. In addition, the NH3 exchange is examined for an extended range of environmental conditions, such as droughts or varying concentrations of atmospheric pollutants, in order to investigate their influence on the overall net exchange.

[Cultivation strategy and path analysis on big brand Chinese medicine for small and medium-sized enterprises].

PubMed

Wang, Yong-Yan; Yang, Hong-Jun

2014-03-01

Small and medium-sized enterprises (SMEs) are important components in Chinese medicine industry. However, the lack of big brand is becoming an urgent problem which is critical to the survival of SMEs. This article discusses the concept and traits of Chinese medicine of big brand, from clinical, scientific and market value three aspects. Guided by market value, highlighting clinical value, aiming at the scientific value improvement of big brand cultivation, we put forward the key points in cultivation, aiming at obtaining branded Chinese medicine with widely recognized efficacy, good quality control system and mechanism well explained and meanwhile which can bring innovation improvement to theory of Chinese medicine. According to the characters of SMEs, we hold a view that to build multidisciplinary research union could be considered as basic path, and then, from top-level design, skill upgrading and application three stages to probe the implementation strategy.

Introduction to big bang nucleosynthesis and modern cosmology

NASA Astrophysics Data System (ADS)

Mathews, Grant J.; Kusakabe, Motohiko; Kajino, Toshitaka

Primordial nucleosynthesis remains as one of the pillars of modern cosmology. It is the testing ground upon which many cosmological models must ultimately rest. It is our only probe of the universe during the important radiation-dominated epoch in the first few minutes of cosmic expansion. This paper reviews the basic equations of space-time, cosmology, and big bang nucleosynthesis. We also summarize the current state of observational constraints on primordial abundances along with the key nuclear reactions and their uncertainties. We summarize which nuclear measurements are most crucial during the big bang. We also review various cosmological models and their constraints. In particular, we analyze the constraints that big bang nucleosynthesis places upon the possible time variation of fundamental constants, along with constraints on the nature and origin of dark matter and dark energy, long-lived supersymmetric particles, gravity waves, and the primordial magnetic field.

[Discussion of the implementation of MIMIC database in emergency medical study].

PubMed

Li, Kaiyuan; Feng, Cong; Jia, Lijing; Chen, Li; Pan, Fei; Li, Tanshi

2018-05-01

To introduce Medical Information Mart for Intensive Care (MIMIC) database and elaborate the approach of critically emergent research with big data based on the feature of MIMIC and updated studies both domestic and overseas, we put forward the feasibility and necessity of introducing medical big data to research in emergency. Then we discuss the role of MIMIC database in emergency clinical study, as well as the principles and key notes of experimental design and implementation under the medical big data circumstance. The implementation of MIMIC database in emergency medical research provides a brand new field for the early diagnosis, risk warning and prognosis of critical illness, however there are also limitations. To meet the era of big data, emergency medical database which is in accordance with our national condition is needed, which will provide new energy to the development of emergency medicine.

The caBIG Terminology Review Process

PubMed Central

Cimino, James J.; Hayamizu, Terry F.; Bodenreider, Olivier; Davis, Brian; Stafford, Grace A.; Ringwald, Martin

2009-01-01

The National Cancer Institute (NCI) is developing an integrated biomedical informatics infrastructure, the cancer Biomedical Informatics Grid (caBIG®), to support collaboration within the cancer research community. A key part of the caBIG architecture is the establishment of terminology standards for representing data. In order to evaluate the suitability of existing controlled terminologies, the caBIG Vocabulary and Data Elements Workspace (VCDE WS) working group has developed a set of criteria that serve to assess a terminology's structure, content, documentation, and editorial process. This paper describes the evolution of these criteria and the results of their use in evaluating four standard terminologies: the Gene Ontology (GO), the NCI Thesaurus (NCIt), the Common Terminology for Adverse Events (known as CTCAE), and the laboratory portion of the Logical Objects, Identifiers, Names and Codes (LOINC). The resulting caBIG criteria are presented as a matrix that may be applicable to any terminology standardization effort. PMID:19154797

Transforming Big Data into cancer-relevant insight: An initial, multi-tier approach to assess reproducibility and relevance* | Office of Cancer Genomics

Cancer.gov

The Cancer Target Discovery and Development (CTD^2) Network was established to accelerate the transformation of "Big Data" into novel pharmacological targets, lead compounds, and biomarkers for rapid translation into improved patient outcomes. It rapidly became clear in this collaborative network that a key central issue was to define what constitutes sufficient computational or experimental evidence to support a biologically or clinically relevant finding.

Variations in water clarity and bottom albedo in Florida Bay from 1985 to 1997

USGS Publications Warehouse

Stumpf, R.P.; Frayer, M.L.; Durako, M.J.; Brock, J.C.

1999-01-01

Following extensive seagrass die-offs of the late 1980s and early 1990s, Florida Bay reportedly had significant declines in water clarity due to turbidity and algal blooms. Scant information exists on the extent of the decline, as this bay was not investigated for water quality concerns before the die-offs and limited areas were sampled after the primary die-off. We use imagery from the Advanced Very High Resolution Radiometer (AVHRR) to examine water clarity in Florida Bay for the period 1985 to 1997. The AVHRR provides data on nominal water reflectance and estimated fight attenuation, which are used here to describe turbidity conditions in the bay on a seasonal basis. In situ observations on changes in seagrass abundance within the bay, combined with the satellite data, provide additional insights into losses of seagrass. The imagery shows an extensive region to the west of Florida Bay having increased reflectance and fight attenuation in both winter and summer beginning in winter of 1988. These increases are consistent with a change from dense seagrass to sparse or negligible cover. Approximately 200 km2 of these offshore seagrasses may have been lost during the primary die-off (1988 through 1991), significantly more than in the bay. The imagery shows the distribution and timing of increased turbidity that followed the die-offs in the northwestern regions of the bay, exemplified in Rankin Lake and Johnson Key Basin, and indicates that about 200 km2 of dense seagrass may have been lost or severely degraded within the bay from the start of the die-off. The decline in water clarity has continued in the northwestern bay since 1991. The area west of the Everglades National Park boundaries has shown decreases in both winter turbidity and summer reflectances, suggestive of partial seagrass recovery. Areas of low reflectance associated with a major Syringodium filiforme seagrass meadow north of Marathon (Vaca Key, in the Florida Keys) appear to have expanded westward toward Big Pine Key, indicating changes in the bottom cover from before the die-off. The southern and eastern sections of the Bay have not shown significant changes in water clarity or bottom albedo throughout the entire time period.

Flight Period of Mountain Pine Beetle (Coleoptera: Curculionidae) in its Recently Expanded Range.

PubMed

Bleiker, K P; Van Hezewijk, B H

2016-12-01

The ability to predict key phenological events, such as the timing of flight periods, is useful for the monitoring and management of insect pests. We used empirical data to describe the flight period of mountain pine beetle, Dendroctonus ponderosae Hopkins, in its recently expanded range east of the Rocky Mountains in Canada and developed a degree-day model based on the number of trapped beetles. Data were collected over four degrees of latitude and six years. The main flight period, when the middle 70% of the total number of beetles were caught, started during the second or third week of July, lasted 26 d, and peaked within 2 wk of starting. The best model accounted for 89% of the variation in the data. Mountain pine beetle's flight tended to start later and be more contracted at higher latitudes. The synchrony of mountain pine beetle's flight period in the expanded range appears to be comparable to the limited reports from the historic range, although it may start earlier. This suggests that conditions in the new range are suitable for a coordinated dispersal flight, which is critical for the beetle's strategy of overwhelming tree defenses by attacking en masse. Forest managers can use the model to support operational decisions, e.g., when to impose hauling restrictions to reduce the risk of spread through the transport of infested material, or the time frame for control programs. Understanding the flight period may also improve our ability to assess the response of mountain pine beetle to novel and changing climates in the future. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Harnessing the Power of Big Data to Improve Graduate Medical Education: Big Idea or Bust?

PubMed

Arora, Vineet M

2018-06-01

With the advent of electronic medical records (EMRs) fueling the rise of big data, the use of predictive analytics, machine learning, and artificial intelligence are touted as transformational tools to improve clinical care. While major investments are being made in using big data to transform health care delivery, little effort has been directed toward exploiting big data to improve graduate medical education (GME). Because our current system relies on faculty observations of competence, it is not unreasonable to ask whether big data in the form of clinical EMRs and other novel data sources can answer questions of importance in GME such as when is a resident ready for independent practice.The timing is ripe for such a transformation. A recent National Academy of Medicine report called for reforms to how GME is delivered and financed. While many agree on the need to ensure that GME meets our nation's health needs, there is little consensus on how to measure the performance of GME in meeting this goal. During a recent workshop at the National Academy of Medicine on GME outcomes and metrics in October 2017, a key theme emerged: Big data holds great promise to inform GME performance at individual, institutional, and national levels. In this Invited Commentary, several examples are presented, such as using big data to inform clinical experience and provide clinically meaningful data to trainees, and using novel data sources, including ambient data, to better measure the quality of GME training.

Corporate Social Responsibility programs of Big Food in Australia: a content analysis of industry documents.

PubMed

Richards, Zoe; Thomas, Samantha L; Randle, Melanie; Pettigrew, Simone

2015-12-01

To examine Corporate Social Responsibility (CSR) tactics by identifying the key characteristics of CSR strategies as described in the corporate documents of selected 'Big Food' companies. A mixed methods content analysis was used to analyse the information contained on Australian Big Food company websites. Data sources included company CSR reports and web-based content that related to CSR initiatives employed in Australia. A total of 256 CSR activities were identified across six organisations. Of these, the majority related to the categories of environment (30.5%), responsibility to consumers (25.0%) or community (19.5%). Big Food companies appear to be using CSR activities to: 1) build brand image through initiatives associated with the environment and responsibility to consumers; 2) target parents and children through community activities; and 3) align themselves with respected organisations and events in an effort to transfer their positive image attributes to their own brands. Results highlight the type of CSR strategies Big Food companies are employing. These findings serve as a guide to mapping and monitoring CSR as a specific form of marketing. © 2015 Public Health Association of Australia.

Integrating the Apache Big Data Stack with HPC for Big Data

NASA Astrophysics Data System (ADS)

Fox, G. C.; Qiu, J.; Jha, S.

2014-12-01

There is perhaps a broad consensus as to important issues in practical parallel computing as applied to large scale simulations; this is reflected in supercomputer architectures, algorithms, libraries, languages, compilers and best practice for application development. However, the same is not so true for data intensive computing, even though commercially clouds devote much more resources to data analytics than supercomputers devote to simulations. We look at a sample of over 50 big data applications to identify characteristics of data intensive applications and to deduce needed runtime and architectures. We suggest a big data version of the famous Berkeley dwarfs and NAS parallel benchmarks and use these to identify a few key classes of hardware/software architectures. Our analysis builds on combining HPC and ABDS the Apache big data software stack that is well used in modern cloud computing. Initial results on clouds and HPC systems are encouraging. We propose the development of SPIDAL - Scalable Parallel Interoperable Data Analytics Library -- built on system aand data abstractions suggested by the HPC-ABDS architecture. We discuss how it can be used in several application areas including Polar Science.

Measurement of the photodissociation of the deuteron at energies relevant to Big Bang nucleosynthesis

NASA Astrophysics Data System (ADS)

Hannaske, R.; Bemmerer, D.; Beyer, R.; Birgersson, E.; Ferrari, A.; Grosse, E.; Junghans, A. R.; Kempe, M.; Kögler, T.; Kosev, K.; Marta, M.; Massarczyk, R.; Matic, A.; Schilling, K. D.; Schramm, G.; Schwengner, R.; Wagner, A.; Yakorev, D.

2016-01-01

The photodissociation of the deuteron is a key reaction in Big Bang nucleosynthesis, but is only sparsely measured in the relevant energy range. To determine the cross section of the d(γ,n)p reaction we used pulsed bremsstrahlung and measured the time-of-flight of the neutrons. In this article, we describe how the efficiency of the neutron detectors was experimentally determined and how the modification of the neutron spectrum by parts of the experimental setup was simulated and corrected.

Infrared Observations with the 1.6 Meter New Solar Telescope in Big Bear: Origins of Space Weather

DTIC Science & Technology

2015-05-21

with the NST came in the Summer of 2009, while the first observations corrected by adaptive optics (AO) came in the Summer of 2010 and first vector...magnetograms (VMGs) in the Summer of 2011. In 2012, a new generation of solar adaptive optics (AO) developed in Big Bear led to hitherto only...upon which the NST has yield key information. Our concentration of sunspots in the second year of funding arises because of the improved resolution

Regional analysis of big five personality factors and suicide rates in Russia.

PubMed

Voracek, Martin

2013-08-01

Extending cross-national and intranational studies on possible aggregate-level associations between personality dimensions and suicide prevalence, this study examined the associations of the Big Five personality factors and suicide rates across 32 regions of the Russian Federation. Failing to replicate one key finding of similar geographic studies, namely, a correspondence of higher suicide rates with lower Agreeableness and Conscientiousness (i.e., higher Psychoticism) scores, higher suicide rates corresponded to higher Agreeableness scores. This effect was obtained with one available data source (regional-level Big Five ratings based on the National Character Survey), but not with another (based on the NEO-PI-R measure). All in all, regional suicide rates across Russia were dissociated from regional variation in personality dimensions.

Tree ecophysiology research at Taylor Woods (P-53)

Treesearch

Thomas E. Kolb; Nate G. McDowell

2008-01-01

We summarize the key findings of tree ecophysiology studies performed at Taylor Woods, Fort Valley Experimental Forest, Arizona between 1994 and 2003 that provide unique insight on impacts of long-term stand density management in ponderosa pine forests on tree water relations, leaf gas exchange, radial growth, leaf area-to-sapwood-area ratio, growth efficiency, leaf...

ESTIMATION OF LEAF AREA INDEX IN OPEN-CANOPY PONDEROSA PINE FORESTS AT DIFFERENT SUCCESSIONAL STAGES AND MANAGEMENT REGIMES IN OREGON. (R828309)

EPA Science Inventory

Abstract

Leaf area and its spatial distribution are key parameters in describing canopy characteristics. They determine radiation regimes and influence mass and energy exchange with the atmosphere. The evaluation of leaf area in conifer stands is particularly challengi...

A reconnaissance of small mammal communities in Garland and Government prairies, Arizona

Treesearch

Joseph L. Ganey; Carol L. Chambers

2011-01-01

Small mammals play key ecological roles in grassland ecosystems, yet little is known regarding small mammal communities in large (>50 km2), high-elevation prairies embedded in ponderosa pine (Pinus ponderosa) forests in north central Arizona. To provide information on community composition and habitat relationships, we live-trapped small mammals on 6 transects in 2...

Invasion resistance and persistence: established plants win, even with disturbance and high propagule pressure

Treesearch

Christopher M. McGlone; Carolyn Hull Sieg; Thomas E. Kolb

2011-01-01

Disturbances and propagule pressure are key mechanisms in plant community resistance to invasion, as well as persistence of invasions. Few studies, however, have experimentally tested the interaction of these two mechanisms. We initiated a study in a southwestern ponderosa pine (Pinus ponderosa Laws.)/bunch grass system to determine the susceptibility of remnant native...

Antennally mediated negative feedback regulation of pheromone production in the pine engraver beetle, Ips pini

NASA Astrophysics Data System (ADS)

Ginzel, Matthew D.; Bearfield, Jeremy C.; Keeling, Christopher I.; McCormack, Colin C.; Blomquist, Gary J.; Tittiger, Claus

2007-01-01

Bark beetles use monoterpenoid aggregation pheromones to coordinate host colonization and mating. These chemical signals are produced de novo in midgut cells via the mevalonate pathway, and pheromone production may be regulated by a negative feedback system mediated through the antennae. In this study, we explored the effect of antennectomy on pheromone production and transcript levels of key mevalonate pathway genes in juvenile hormone III-treated male pine engraver beetles, Ips pini (Say). Antennectomized males produced significantly greater amounts of pheromone than podectomized males and those with intact antennae. Likewise, mRNA levels of three mevalonate pathway genes important in pheromone biosynthesis were measured by quantitative real-time PCR and found to be induced to a greater extent with antennectomy, suggesting a transcriptional regulation of pheromone production.

Integrating continental-scale ecological data into university courses: Developing NEON's Online Learning Portal

NASA Astrophysics Data System (ADS)

Wasser, L. A.; Gram, W.; Lunch, C. K.; Petroy, S. B.; Elmendorf, S.

2013-12-01

'Big Data' are becoming increasingly common in many fields. The National Ecological Observatory Network (NEON) will be collecting data over the 30 years, using consistent, standardized methods across the United States. Similar efforts are underway in other parts of the globe (e.g. Australia's Terrestrial Ecosystem Research Network, TERN). These freely available new data provide an opportunity for increased understanding of continental- and global scale processes such as changes in vegetation structure and condition, biodiversity and landuse. However, while 'big data' are becoming more accessible and available, integrating big data into the university courses is challenging. New and potentially unfamiliar data types and associated processing methods, required to work with a growing diversity of available data, may warrant time and resources that present a barrier to classroom integration. Analysis of these big datasets may further present a challenge given large file sizes, and uncertainty regarding best methods to properly statistically summarize and analyze results. Finally, teaching resources, in the form of demonstrative illustrations, and other supporting media that might help teach key data concepts, take time to find and more time to develop. Available resources are often spread widely across multi-online spaces. This presentation will overview the development of NEON's collaborative University-focused online education portal. Portal content will include 1) interactive, online multi-media content that explains key concepts related to NEON's data products including collection methods, key metadata to consider and consideration of potential error and uncertainty surrounding data analysis; and 2) packaged 'lab' activities that include supporting data to be used in an ecology, biology or earth science classroom. To facilitate broad use in classrooms, lab activities will take advantage of freely and commonly available processing tools, techniques and scripts. All NEON materials are being developed in collaboration with labs and organizations across the globe. Integrating data analysis and processing techniques, early in student's careers will support and facilitate student advancement in the sciences - contributing to a larger body of knowledge and understanding of continental and global scale issues. Facilitating understanding of data use and empowering young ecologists with the tools required to process the data, is thus as integral to the observatory as the data itself. In this presentation, we discuss the integral role of freely available education materials that demonstrate the use of big data to address ecological questions and concepts. We also review gaps in existing educational resources related to big data and associated tools. Further, we address the great potential for big data inclusion into both an existing ecological, physical and environmental science courses and self-paced learning model through engaging and interactive multi-media presentation. Finally, we present beta-versions of the interactive, multi-media modules and results from feedback following early piloting and review.

Natural regeneration processes in big sagebrush (Artemisia tridentata)

USGS Publications Warehouse

Schlaepfer, Daniel R.; Lauenroth, William K.; Bradford, John B.

2014-01-01

Big sagebrush, Artemisia tridentata Nuttall (Asteraceae), is the dominant plant species of large portions of semiarid western North America. However, much of historical big sagebrush vegetation has been removed or modified. Thus, regeneration is recognized as an important component for land management. Limited knowledge about key regeneration processes, however, represents an obstacle to identifying successful management practices and to gaining greater insight into the consequences of increasing disturbance frequency and global change. Therefore, our objective is to synthesize knowledge about natural big sagebrush regeneration. We identified and characterized the controls of big sagebrush seed production, germination, and establishment. The largest knowledge gaps and associated research needs include quiescence and dormancy of embryos and seedlings; variation in seed production and germination percentages; wet-thermal time model of germination; responses to frost events (including freezing/thawing of soils), CO2 concentration, and nutrients in combination with water availability; suitability of microsite vs. site conditions; competitive ability as well as seedling growth responses; and differences among subspecies and ecoregions. Potential impacts of climate change on big sagebrush regeneration could include that temperature increases may not have a large direct influence on regeneration due to the broad temperature optimum for regeneration, whereas indirect effects could include selection for populations with less stringent seed dormancy. Drier conditions will have direct negative effects on germination and seedling survival and could also lead to lighter seeds, which lowers germination success further. The short seed dispersal distance of big sagebrush may limit its tracking of suitable climate; whereas, the low competitive ability of big sagebrush seedlings may limit successful competition with species that track climate. An improved understanding of the ecology of big sagebrush regeneration should benefit resource management activities and increase the ability of land managers to anticipate global change impacts.

Using Ethical Reasoning to Amplify the Reach and Resonance of Professional Codes of Conduct in Training Big Data Scientists.

PubMed

Tractenberg, Rochelle E; Russell, Andrew J; Morgan, Gregory J; FitzGerald, Kevin T; Collmann, Jeff; Vinsel, Lee; Steinmann, Michael; Dolling, Lisa M

2015-12-01

The use of Big Data--however the term is defined--involves a wide array of issues and stakeholders, thereby increasing numbers of complex decisions around issues including data acquisition, use, and sharing. Big Data is becoming a significant component of practice in an ever-increasing range of disciplines; however, since it is not a coherent "discipline" itself, specific codes of conduct for Big Data users and researchers do not exist. While many institutions have created, or will create, training opportunities (e.g., degree programs, workshops) to prepare people to work in and around Big Data, insufficient time, space, and thought have been dedicated to training these people to engage with the ethical, legal, and social issues in this new domain. Since Big Data practitioners come from, and work in, diverse contexts, neither a relevant professional code of conduct nor specific formal ethics training are likely to be readily available. This normative paper describes an approach to conceptualizing ethical reasoning and integrating it into training for Big Data use and research. Our approach is based on a published framework that emphasizes ethical reasoning rather than topical knowledge. We describe the formation of professional community norms from two key disciplines that contribute to the emergent field of Big Data: computer science and statistics. Historical analogies from these professions suggest strategies for introducing trainees and orienting practitioners both to ethical reasoning and to a code of professional conduct itself. We include two semester course syllabi to strengthen our thesis that codes of conduct (including and beyond those we describe) can be harnessed to support the development of ethical reasoning in, and a sense of professional identity among, Big Data practitioners.

Intensive management affects composition of betaproteobacterial ammonia oxidizers in turfgrass systems.

PubMed

Dell, Emily A; Bowman, Daniel; Rufty, Thomas; Shi, Wei

2008-07-01

Turfgrass is a highly managed ecosystem subject to frequent fertilization, mowing, irrigation, and application of pesticides. Turf management practices may create a perturbed environment for ammonia oxidizers, a key microbial group responsible for nitrification. To elucidate the long-term effects of turf management on these bacteria, we assessed the composition of betaproteobacterial ammonia oxidizers in a chronosequence of turfgrass systems (i.e., 1, 6, 23, and 95 years old) and the adjacent native pines by using both 16S rRNA and amoA gene fragments specific to ammonia oxidizers. Based on the Shannon-Wiener diversity index of denaturing gradient gel electrophoresis patterns and the rarefaction curves of amoA clones, turf management did not change the relative diversity and richness of ammonia oxidizers in turf soils as compared to native pine soils. Ammonia oxidizers in turfgrass systems comprised a suite of phylogenetic clusters common to other terrestrial ecosystems. Nitrosospira clusters 0, 2, 3, and 4; Nitrosospira sp. Nsp65-like sequences; and Nitrosomonas clusters 6 and 7 were detected in the turfgrass chronosequence with Nitrosospira clusters 3 and 4 being dominant. However, both turf age and land change (pine to turf) effected minor changes in ammonia oxidizer composition. Nitrosospira cluster 0 was observed only in older turfgrass systems (i.e., 23 and 95 years old); fine-scale differences within Nitrosospira cluster 3 were seen between native pines and turf. Further investigations are needed to elucidate the ecological implications of the compositional differences.

The Widening Gulf between Genomics Data Generation and Consumption: A Practical Guide to Big Data Transfer Technology.

PubMed

Feltus, Frank A; Breen, Joseph R; Deng, Juan; Izard, Ryan S; Konger, Christopher A; Ligon, Walter B; Preuss, Don; Wang, Kuang-Ching

2015-01-01

In the last decade, high-throughput DNA sequencing has become a disruptive technology and pushed the life sciences into a distributed ecosystem of sequence data producers and consumers. Given the power of genomics and declining sequencing costs, biology is an emerging "Big Data" discipline that will soon enter the exabyte data range when all subdisciplines are combined. These datasets must be transferred across commercial and research networks in creative ways since sending data without thought can have serious consequences on data processing time frames. Thus, it is imperative that biologists, bioinformaticians, and information technology engineers recalibrate data processing paradigms to fit this emerging reality. This review attempts to provide a snapshot of Big Data transfer across networks, which is often overlooked by many biologists. Specifically, we discuss four key areas: 1) data transfer networks, protocols, and applications; 2) data transfer security including encryption, access, firewalls, and the Science DMZ; 3) data flow control with software-defined networking; and 4) data storage, staging, archiving and access. A primary intention of this article is to orient the biologist in key aspects of the data transfer process in order to frame their genomics-oriented needs to enterprise IT professionals.

Density dependence, whitebark pine, and vital rates of grizzly bears

USGS Publications Warehouse

van Manen, Frank T.; Haroldson, Mark A.; Bjornlie, Daniel D.; Ebinger, Michael R.; Thompson, Daniel J.; Costello, Cecily M.; White, Gary C.

2016-01-01

Understanding factors influencing changes in population trajectory is important for effective wildlife management, particularly for populations of conservation concern. Annual population growth of the grizzly bear (Ursus arctos) population in the Greater Yellowstone Ecosystem, USA has slowed from 4.2–7.6% during 1983–2001 to 0.3–2.2% during 2002–2011. Substantial changes in availability of a key food source and bear population density have occurred. Whitebark pine (Pinus albicaulis), the seeds of which are a valuable but variable fall food for grizzly bears, has experienced substantial mortality primarily due to a mountain pine beetle (Dendroctonus ponderosae) outbreak that started in the early 2000s. Positive growth rates of grizzly bears have resulted in populations reaching high densities in some areas and have contributed to continued range expansion. We tested research hypotheses to examine if changes in vital rates detected during the past decade were more associated with whitebark pine decline or, alternatively, increasing grizzly bear density. We focused our assessment on known-fate data to estimate survival of cubs-of-the-year (cubs), yearlings, and independent bears (≥2 yrs), and reproductive transition of females from having no offspring to having cubs. We used spatially and temporally explicit indices for grizzly bear density and whitebark pine mortality as individual covariates. Models indicated moderate support for an increase in survival of independent male bears over 1983–2012, whereas independent female survival did not change. Cub survival, yearling survival, and reproductive transition from no offspring to cubs all changed during the 30-year study period, with lower rates evident during the last 10–15 years. Cub survival and reproductive transition were negatively associated with an index of grizzly bear density, indicating greater declines where bear densities were higher. Our analyses did not support a similar relationship for the index of whitebark pine mortality. The results of our study support the interpretation that slowing of population growth during the last decade was associated more with increasing grizzly bear density than the decline in whitebark pine. Grizzly bear density and its potential effect on vital rates and population trajectory warrant consideration for management of the grizzly bear population in the Greater Yellowstone Ecosystem.

Comparing modelling techniques when designing VPH gratings for BigBOSS

NASA Astrophysics Data System (ADS)

Poppett, Claire; Edelstein, Jerry; Lampton, Michael; Jelinsky, Patrick; Arns, James

2012-09-01

BigBOSS is a Stage IV Dark Energy instrument based on the Baryon Acoustic Oscillations (BAO) and Red Shift Distortions (RSD) techniques using spectroscopic data of 20 million ELG and LRG galaxies at 0.5<=z<=1.6 in addition to several hundred thousand QSOs at 0.5<=z<=3.5. When designing BigBOSS instrumentation, it is imperative to maximize throughput whilst maintaining a resolving power of between R=1500 and 4000 over a wavelength range of 360-980 nm. Volume phase Holographic (VPH) gratings have been identified as a key technology which will enable the efficiency requirement to be met, however it is important to be able to accurately predict their performance. In this paper we quantitatively compare different modelling techniques in order to assess the parameter space over which they are more capable of accurately predicting measured performance. Finally we present baseline parameters for grating designs that are most suitable for the BigBOSS instrument.

Big data: the next frontier for innovation in therapeutics and healthcare.

PubMed

Issa, Naiem T; Byers, Stephen W; Dakshanamurthy, Sivanesan

2014-05-01

Advancements in genomics and personalized medicine not only effect healthcare delivery from patient and provider standpoints, but also reshape biomedical discovery. We are in the era of the '-omics', wherein an individual's genome, transcriptome, proteome and metabolome can be scrutinized to the finest resolution to paint a personalized biochemical fingerprint that enables tailored treatments, prognoses, risk factors, etc. Digitization of this information parlays into 'big data' informatics-driven evidence-based medical practice. While individualized patient management is a key beneficiary of next-generation medical informatics, this data also harbors a wealth of novel therapeutic discoveries waiting to be uncovered. 'Big data' informatics allows for networks-driven systems pharmacodynamics whereby drug information can be coupled to cellular- and organ-level physiology for determining whole-body outcomes. Patient '-omics' data can be integrated for ontology-based data-mining for the discovery of new biological associations and drug targets. Here we highlight the potential of 'big data' informatics for clinical pharmacology.

Big data: the next frontier for innovation in therapeutics and healthcare

PubMed Central

Issa, Naiem T; Byers, Stephen W; Dakshanamurthy, Sivanesan

2015-01-01

Advancements in genomics and personalized medicine not only effect healthcare delivery from patient and provider standpoints, but also reshape biomedical discovery. We are in the era of the “-omics”, wherein an individual’s genome, transcriptome, proteome and metabolome can be scrutinized to the finest resolution to paint a personalized biochemical fingerprint that enables tailored treatments, prognoses, risk factors, etc. Digitization of this information parlays into “big data” informatics-driven evidence-based medical practice. While individualized patient management is a key beneficiary of next-generation medical informatics, this data also harbors a wealth of novel therapeutic discoveries waiting to be uncovered. “Big data” informatics allows for networks-driven systems pharmacodynamics whereby drug information can be coupled to cellular- and organ-level physiology for determining whole-body outcomes. Patient “-omics” data can be integrated for ontology-based data-mining for the discovery of new biological associations and drug targets. Here we highlight the potential of “big data” informatics for clinical pharmacology. PMID:24702684

Could Blobs Fuel Storage-Based Convergence between HPC and Big Data?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matri, Pierre; Alforov, Yevhen; Brandon, Alvaro

The increasingly growing data sets processed on HPC platforms raise major challenges for the underlying storage layer. A promising alternative to POSIX-IO- compliant file systems are simpler blobs (binary large objects), or object storage systems. Such systems offer lower overhead and better performance at the cost of largely unused features such as file hierarchies or permissions. Similarly, blobs are increasingly considered for replacing distributed file systems for big data analytics or as a base for storage abstractions such as key-value stores or time-series databases. This growing interest in such object storage on HPC and big data platforms raises the question:more » Are blobs the right level of abstraction to enable storage-based convergence between HPC and Big Data? In this paper we study the impact of blob-based storage for real-world applications on HPC and cloud environments. The results show that blobbased storage convergence is possible, leading to a significant performance improvement on both platforms« less

DoD News | DoDLive

Science.gov Websites

Navy chief. Read More Posted in DoD News, Family Focus Friday, Inside the DoD, Military Families Challenge: It's Kind of a Big Memorial Day Deal Legacy Mentors Play Key Role In TAPS Good Grief Camps Posted Play Key Role In TAPS Good Grief Camps NBA's Rip Hamilton Learns What's Real Vs. Myth on USO Tour

How the Adoption of the Big-Data Paradigm Affects the Key Factors That Influence the Effectiveness of an Information Assurance (IA) Framework: A Multiple-Case Study

ERIC Educational Resources Information Center

Apple, Benjamin G.

2017-01-01

This qualitative study identified those factors that influence the perceived effectiveness of traditional IA control frameworks. The key factors examined in this study are risk management, governance, access control, privacy protection, integrity, availability, reliability, and usability. The researcher endeavored to determine how the…

Soil CO2 dynamics and fluxes as affected by tree harvest in an experimental sand ecosystem.

Treesearch

C.K. Keller; T.M. White; R. O' Brien; J.L. Smith

2006-01-01

Soil CO2 production is a key process in ecosystem C exchange, and global change predictions require understanding of how ecosystem disturbance affects this process. We monitored CO2 levels in soil gas and as bicarbonate in drainage from an experimental red pine ecosystem, for 1 year before and 3 years after its aboveground...

Effects of genetics, management intensity, and seedling density on early stocking in loblolly pine

Treesearch

Scott D. Roberts; Randall J. Rousseau; B. Landis Herrin

2015-01-01

Rapid establishment and early tree growth can be key factors in successful plantation management. This generally entails planting good quality planting stock at a seedling density appropriate for the management objectives and then managing at an appropriate intensity with a goal of fully occupying the site as quickly as possible within the context of those objectives....

Profitability potential for Pinus taeda L. (loblolly pine) short-rotation bioenergy plantings in the southern USA

Treesearch

James H. Perdue; John A. Stanturf; Timothy M. Young; Xia Huang; Derek Dougherty; Michael Pigott; Zhimei Guo

2017-01-01

The use of renewable resources is important to the developing bioenergy economy and short rotation woody crops (SRWC) are key renewable feedstocks. A necessary step in advancing SRWC is defining regions suitable for SRWC commercial activities and assessing the relative economic viability among suitable regions. The goal of this study was to assess the potential...

A Key to Phoretic Mites Commonly Found on Long-Horned Beetles Emerging from Southern Pines

Treesearch

D.N. Kinn; M.J. Linit

1989-01-01

Long-horned beetles that attack conifers are usually considered secondary pests because they generally develop in dead and dying trees and are not the cause of tree mortality (Drooz 1985). Recently that status has changed with the realization that a number of species, especially those belonging to the genus Monochamus, are vectors of the pinewood...

Using Multiple Big Datasets and Machine Learning to Produce a New Global Particulate Dataset: A Technology Challenge Case Study

NASA Astrophysics Data System (ADS)

Lary, D. J.

2013-12-01

A BigData case study is described where multiple datasets from several satellites, high-resolution global meteorological data, social media and in-situ observations are combined using machine learning on a distributed cluster using an automated workflow. The global particulate dataset is relevant to global public health studies and would not be possible to produce without the use of the multiple big datasets, in-situ data and machine learning.To greatly reduce the development time and enhance the functionality a high level language capable of parallel processing has been used (Matlab). A key consideration for the system is high speed access due to the large data volume, persistence of the large data volumes and a precise process time scheduling capability.

IMPROVEMENT SUPPORT RESEARCH OF LOCAL DISASTER PREVENTION POWER USING THE FIRE SPREADING SIMULATION SYSTEM IN CASE OF A BIG EARTHQUAKE

NASA Astrophysics Data System (ADS)

Futagami, Toru; Omoto, Shohei; Hamamoto, Kenichirou

This research describes the risk communication towards improvement in the local disaster prevention power for Gobusho town in Marugame city which is only a high density city area in Kagawa Pref. Specifically, the key persons and authors of the area report the practice research towards improvement in the local disaster prevention power by the PDCA cycle of the area, such as formation of local voluntary disaster management organizations and implementation of an emergency drill, applying the fire spreading simulation system in case of a big earthquake. The fire spreading simulation system in case of the big earthquake which authors are developing describes the role and subject which have been achieved to BCP of the local community as a support system.

Hydrological processes in major types of Chinese forest

NASA Astrophysics Data System (ADS)

Wei, X.; Liu, S.; Zhou, G.; Wang, C.

2005-01-01

Overexploitation of forest resources in China has caused serious concerns over its negative impacts on water resources, biodiversity, soil erosion, wildlife habitat and community stability. One key concern is the impact of forestry practices on hydrological processes, particularly the effect of forest harvest on water quality and quantity. Since the mid 1980s, a series of scientific studies on forest hydrology have been initiated in major types of forest across the country, including Korean pine (Pinus koraiensis), Chinese fir (Cunninghamia lanceolata), oak (Quercus mongolica), larch (Larix gmelinii), faber fir (Abies fabri), Chinese pine (Pinus tabulaeformis), armand pine (Pinus arandi), birch (Betula platyphylla) and some tropical forests. These studies measured rainfall interception, streamflow, evapotranspiration and impacts of forest management (clearcutting and reforestation). This paper reviews key findings from these forest hydrological studies conducted over the past 20 years in China.Forest canopy interception rates varied from 15 to 30% of total rainfall, depending on forest canopy and rainfall characteristics. Stemflow is generally a small percentage (<5%) of total rainfall, but it accounts for 15% in the oak forest in northeast China. The high amounts of stemflow, as well as higher amounts of nutrients contained in stemflow, may allow oak trees to adapt to a dry and nutrient-poor environment. Evapotranspiration was a significant component of the water budget in these Chinese forests studied, ranging from 80-90% of total rainfall in the northern temperate forests to 40-50% in the southern tropical forests. Forests substantially reduced surface runoff and erosion. However, no consistent response on total streamflows was observed. The reason for the inconsistency may be due to complexities of streamflow processes and the utilization of different methodologies applied at the various spatial scales. Copyright

Block cipher based on modular arithmetic and methods of information compression

NASA Astrophysics Data System (ADS)

Krendelev, S.; Zbitnev, N.; Shishlyannikov, D.; Gridin, D.

2017-10-01

The article focuses on the description of a new block cipher. Due to the heightened interest in BigData the described cipher is used to encrypt big volumes of data in cloud storage services. The main advantages of the given cipher are the ease of implementation and the possibility of probabilistic encryption. This means that the text encryption will be different when the key is the same and the data is the same. So, the strength of the encryption is improved. Additionally, the ciphered message size can be hardly predicted.

The Big Bang and Cosmic Inflation

NASA Astrophysics Data System (ADS)

Guth, Alan H.

2014-03-01

A summary is given of the key developments of cosmology in the 20th century, from the work of Albert Einstein to the emergence of the generally accepted hot big bang model. The successes of this model are reviewed, but emphasis is placed on the questions that the model leaves unanswered. The remainder of the paper describes the inflationary universe model, which provides plausible answers to a number of these questions. It also offers a possible explanation for the origin of essentially all the matter and energy in the observed universe.

Comparative effects of climate on ecosystem nitrogen and soil biogeochemistry in U.S. national parks. FY 2001 Annual Report (Res. Rept. No. 94)

USGS Publications Warehouse

Stottlemyer, R.; Edmonds, R.; Scherbarth, L.; Urbanczyk, K.; Van Miegroet, H.; Zak, J.

2002-01-01

In 1998, the USGS Global Change program funded research for a network of Long-Term Reference Ecosystems initially established in national parks and funded by the National Park Service. The network included Noland Divide, Great Smoky Mountains National Park, Tennessee; Pine Canyon, Big Ben National park, Texas; West Twin Creek, Olympic National Park, Washingtona?? Wallace Lake, Isle Royale National Park, Michigan; and the Asik watershed, Noatak National Preserve, Alaska. The watershed ecosystem model was used since this approach permits additional statistical power in detection of trends among variables, and the watershed in increasingly a land unit used in resource management and planning. The ecosystems represent a major fraction of lands administered by the National Park Service, and were chosen generally for the contrasts among sites. For example, tow of the site, Noland and West Twin, are characterized by high precipitation amounts, but Noland receives some of the highest atmospheric nitrogen (N) inputs in North America. In contrast, Pine Canyon and Asik are warm and cold desert sites respectively. The Asik watershed receives <1% the atmospheric N inputs Noland receives. The Asik site is at the northern extent (treeline) of the boreal biome in the North America while Wallace is at the southern ecotone between boreal and northern hardwoods. The research goal for these sites is to gain a basic understanding of ecosystem structure and function, and the response to global change especially atmospheric inputs and climate.

Big data prediction of durations for online collective actions based on peak's timing

NASA Astrophysics Data System (ADS)

Nie, Shizhao; Wang, Zheng; Pujia, Wangmo; Nie, Yuan; Lu, Peng

2018-02-01

Peak Model states that each collective action has a life circle, which contains four periods of "prepare", "outbreak", "peak", and "vanish"; and the peak determines the max energy and the whole process. The peak model's re-simulation indicates that there seems to be a stable ratio between the peak's timing (TP) and the total span (T) or duration of collective actions, which needs further validations through empirical data of collective actions. Therefore, the daily big data of online collective actions is applied to validate the model; and the key is to check the ratio between peak's timing and the total span. The big data is obtained from online data recording & mining of websites. It is verified by the empirical big data that there is a stable ratio between TP and T; furthermore, it seems to be normally distributed. This rule holds for both the general cases and the sub-types of collective actions. Given the distribution of the ratio, estimated probability density function can be obtained, and therefore the span can be predicted via the peak's timing. Under the scenario of big data, the instant span (how long the collective action lasts or when it ends) will be monitored and predicted in real-time. With denser data (Big Data), the estimation of the ratio's distribution gets more robust, and the prediction of collective actions' spans or durations will be more accurate.

Priming the Pump for Big Data at Sentara Healthcare.

PubMed

Kern, Howard P; Reagin, Michael J; Reese, Bertram S

2016-01-01

Today's healthcare organizations are facing significant demands with respect to managing population health, demonstrating value, and accepting risk for clinical outcomes across the continuum of care. The patient's environment outside the walls of the hospital and physician's office-and outside the electronic health record (EHR)-has a substantial impact on clinical care outcomes. The use of big data is key to understanding factors that affect the patient's health status and enhancing clinicians' ability to anticipate how the patient will respond to various therapies. Big data is essential to delivering sustainable, highquality, value-based healthcare, as well as to the success of new models of care such as clinically integrated networks (CINs) and accountable care organizations.Sentara Healthcare, based in Norfolk, Virginia, has been an early adopter of the technologies that have readied us for our big data journey: EHRs, telehealth-supported electronic intensive care units, and telehealth primary care support through MDLIVE. Although we would not say Sentara is at the cutting edge of the big data trend, it certainly is among the fast followers. Use of big data in healthcare is still at an early stage compared with other industries. Tools for data analytics are maturing, but traditional challenges such as heightened data security and limited human resources remain the primary focus for regional health systems to improve care and reduce costs. Sentara primarily makes actionable use of big data in our CIN, Sentara Quality Care Network, and at our health plan, Optima Health. Big data projects can be expensive, and justifying the expense organizationally has often been easier in times of crisis. We have developed an analytics strategic plan separate from but aligned with corporate system goals to ensure optimal investment and management of this essential asset.

Three Big Ideas for Reforming Acquisition: Evidence-Based Propositions for Transformation

DTIC Science & Technology

2015-04-30

specific ideas for improving key aspects of defense acquisition reforming the process for managing capabilities, addressing technology insertion, and...offers three specific ideas for improving key aspects of defense acquisition: reforming the process for managing capabilities, addressing technology...and process changes need to be made for any significant change to be seen. This paper offers reform ideas in three specific areas: achieving the

Whitebark pine mortality related to white pine blister rust, mountain pine beetle outbreak, and water availability

USGS Publications Warehouse

Shanahan, Erin; Irvine, Kathryn M.; Thoma, David P.; Wilmoth, Siri K.; Ray, Andrew; Legg, Kristin; Shovic, Henry

2016-01-01

Whitebark pine (Pinus albicaulis) forests in the western United States have been adversely affected by an exotic pathogen (Cronartium ribicola, causal agent of white pine blister rust), insect outbreaks (Dendroctonus ponderosae, mountain pine beetle), and drought. We monitored individual trees from 2004 to 2013 and characterized stand-level biophysical conditions through a mountain pine beetle epidemic in the Greater Yellowstone Ecosystem. Specifically, we investigated associations between tree-level variables (duration and location of white pine blister rust infection, presence of mountain pine beetle, tree size, and potential interactions) with observations of individual whitebark pine tree mortality. Climate summaries indicated that cumulative growing degree days in years 2006–2008 likely contributed to a regionwide outbreak of mountain pine beetle prior to the observed peak in whitebark mortality in 2009. We show that larger whitebark pine trees were preferentially attacked and killed by mountain pine beetle and resulted in a regionwide shift to smaller size class trees. In addition, we found evidence that smaller size class trees with white pine blister rust infection experienced higher mortality than larger trees. This latter finding suggests that in the coming decades white pine blister rust may become the most probable cause of whitebark pine mortality. Our findings offered no evidence of an interactive effect of mountain pine beetle and white pine blister rust infection on whitebark pine mortality in the Greater Yellowstone Ecosystem. Interestingly, the probability of mortality was lower for larger trees attacked by mountain pine beetle in stands with higher evapotranspiration. Because evapotranspiration varies with climate and topoedaphic conditions across the region, we discuss the potential to use this improved understanding of biophysical influences on mortality to identify microrefugia that might contribute to successful whitebark pine conservation efforts. Using tree-level observations, the National Park Service-led Greater Yellowstone Interagency Whitebark Pine Long-term Monitoring Program provided important ecological insight on the size-dependent effects of white pine blister rust, mountain pine beetle, and water availability on whitebark pine mortality. This ongoing monitoring campaign will continue to offer observations that advance conservation in the Greater Yellowstone Ecosystem.

Low offspring survival in mountain pine beetle infesting the resistant Great Basin bristlecone pine supports the preference-performance hypothesis.

PubMed

Eidson, Erika L; Mock, Karen E; Bentz, Barbara J

2018-01-01

The preference-performance hypothesis states that ovipositing phytophagous insects will select host plants that are well-suited for their offspring and avoid host plants that do not support offspring performance (survival, development and fitness). The mountain pine beetle (Dendroctonus ponderosae), a native insect herbivore in western North America, can successfully attack and reproduce in most species of Pinus throughout its native range. However, mountain pine beetles avoid attacking Great Basin bristlecone pine (Pinus longaeva), despite recent climate-driven increases in mountain pine beetle populations at the high elevations where Great Basin bristlecone pine grows. Low preference for a potential host plant species may not persist if the plant supports favorable insect offspring performance, and Great Basin bristlecone pine suitability for mountain pine beetle offspring performance is unclear. We infested cut bolts of Great Basin bristlecone pine and two susceptible host tree species, limber (P. flexilis) and lodgepole (P. contorta) pines with adult mountain pine beetles and compared offspring performance. To investigate the potential for variation in offspring performance among mountain pine beetles from different areas, we tested beetles from geographically-separated populations within and outside the current range of Great Basin bristlecone pine. Although mountain pine beetles constructed galleries and laid viable eggs in all three tree species, extremely few offspring emerged from Great Basin bristlecone pine, regardless of the beetle population. Our observed low offspring performance in Great Basin bristlecone pine corresponds with previously documented low mountain pine beetle attack preference. A low preference-low performance relationship suggests that Great Basin bristlecone pine resistance to mountain pine beetle is likely to be retained through climate-driven high-elevation mountain pine beetle outbreaks.

Low offspring survival in mountain pine beetle infesting the resistant Great Basin bristlecone pine supports the preference-performance hypothesis

PubMed Central

Mock, Karen E.; Bentz, Barbara J.

2018-01-01

The preference-performance hypothesis states that ovipositing phytophagous insects will select host plants that are well-suited for their offspring and avoid host plants that do not support offspring performance (survival, development and fitness). The mountain pine beetle (Dendroctonus ponderosae), a native insect herbivore in western North America, can successfully attack and reproduce in most species of Pinus throughout its native range. However, mountain pine beetles avoid attacking Great Basin bristlecone pine (Pinus longaeva), despite recent climate-driven increases in mountain pine beetle populations at the high elevations where Great Basin bristlecone pine grows. Low preference for a potential host plant species may not persist if the plant supports favorable insect offspring performance, and Great Basin bristlecone pine suitability for mountain pine beetle offspring performance is unclear. We infested cut bolts of Great Basin bristlecone pine and two susceptible host tree species, limber (P. flexilis) and lodgepole (P. contorta) pines with adult mountain pine beetles and compared offspring performance. To investigate the potential for variation in offspring performance among mountain pine beetles from different areas, we tested beetles from geographically-separated populations within and outside the current range of Great Basin bristlecone pine. Although mountain pine beetles constructed galleries and laid viable eggs in all three tree species, extremely few offspring emerged from Great Basin bristlecone pine, regardless of the beetle population. Our observed low offspring performance in Great Basin bristlecone pine corresponds with previously documented low mountain pine beetle attack preference. A low preference-low performance relationship suggests that Great Basin bristlecone pine resistance to mountain pine beetle is likely to be retained through climate-driven high-elevation mountain pine beetle outbreaks. PMID:29715269

Key mechanisms of metabolic changes in mountain pine and larch under drought in the Swiss National Park

NASA Astrophysics Data System (ADS)

Churakova, Olga; Bigler, Christof; Bryukhanova, Marina; Siegwolf, Rolf

2014-05-01

Forests are of great ecological, economic and social importance worldwide. In many regions they have been recently affected by water deficits during summer droughts due to increasing temperatures and shortage of precipitation (Allen et al. 2010). Climate models predict that drought frequency will continue to increase during the 21st century and beyond (CH 2011). Since the foundation of the Swiss National Park (SNP) in 1914 these forests have not been managed any more, which allows to study natural processes in these forest ecosystems. Since the 1990s, annual and spring temperatures increased in the SNP up to 0.5 ºC and 1.02 ºC, respectively, and average summer temperature increased up to 0.6 ºC. Annual precipitation decreased by 81 mm compared to the mean values (927 mm) from 1917 to 1989. Therefore, detailed studies of drought effects on the physiological functioning of trees over the last decades are needed. Recently, mortality processes of mountain pines were observed in the Swiss National Park (Bigler, Rigling 2013). It is of great interest to investigate and compare the physiological responses of mountain pine and larch to drought and to understand the mechanisms behind the mortality processes. The goal of our study is to investigate the key mechanisms of tree physiological responses to drought in the SNP using state-of-the-art methods of classical dendrochronology, tree physiology, stable isotope, and compound-specific isotope analyses. Long-term responses of mountain pine and larch trees from north- and south-facing sites to drought will be inferred from tree-ring width data. Based on climatic data a drought index will be calculated and reconstructed back in time. New chronologies for stable carbon and oxygen isotope ratios derived from both pine and larch tree-ring cellulose will provide retrospective insight into the long-term whole-plant physiological control of gas exchange derived from estimates of stomatal conductance, photosynthetic rate and intrinsic water use efficiency. Carbon isotopes ratios of specific sugar compounds such as sucrose, raffinose, fructose, ribose and pinitol in needle and wood samples will help to evaluate the impact of drought on the carbohydrate balance and carbon allocation. Analyzing the oxygen isotopic compositions of soil water, sap water (water in branches) and precipitation we will determine the role of the different water sources for tree growth under drought conditions. The proposed work will provide a unique opportunity to assess the survival potential of mountain pine and larch trees exposed to drought that will help to estimate risks of modern climatic changes and forest damage. This project was supported by Marie Heim-Vögtlin Programme PMPDP2_145507/1 granted to Olga Churakova (Sidorova). References: Allen CD et al. (2010) A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests Forest Ecology and Management 259:660-684 Bigler C, Rigling A (2013) Precision and accuracy of tree-ring-based death dates of mountain pines in the Swiss National Park. Trees - Structure and Function. 27: 1703-1712 CH 2011 Swiss Climate Change Scenarios CH2011. In. C2SM, MeteoSwiss, ETH, NCCR Climate, and OcCC, p 88

Comparison of nondestructive testing methods for evaluating No. 2 Southern Pine lumber: Part B, modulus of rupture

Treesearch

B.Z. Yang; R.D. Seale; R. Shmulsky; J. Dahlen; X. Wang

2017-01-01

The identification of strength-reducing characteristics that impact modulus of rupture (MOR) is a key differentiation between lumber grades. Because global design values for MOR are at the fifth percentile level and in-grade lumber can be highly variable, it is important that nondestructive evaluation technology be used to better discern the potential wood strength. In...

Burning rate of solid wood measured in a heat release rate calorimeter

Treesearch

H. C. Tran; R. H. White

1992-01-01

Burning rate is a key factor in modeling fire growth and fire endurance of wood structures. This study investigated the burning rate of selected wood materials as determined by heat release, mass loss and charring rates. Thick samples of redwood, southern pine, red oak and basswood were tested in a heat release rate calorimeter. Results on ignitability and average beat...

Transpirational drying effects on energy and ash content from whole-tree chipping operations in a southern pine plantation

Treesearch

J. Cutshall; D. Greene; S. Baker; Dana Mitchell

2011-01-01

Newly announced North American bioenergy projects will likely increase the demand for woody biomass substantially over the next five to ten years. High harvesting and transportation costs for woody biomass from forests are commonly identified as key constraints to expanding this new industry and meeting expected wood fiber demand. In addition to a cost-competitive...

Impacts of four decades of stand density management treatments on wood properties of loblolly pine

Treesearch

M.A. Blazier; A. Clark; J.M. Mahon; M.R. Strub; R.F. Daniels; L.R. Schimleck

2013-01-01

Stand density management is a powerful silvicultural tool for manipulating stand volumes, but it has the potential to alter key wood properties. At a site in northcentral Louisiana, five density management regimes were conducted over a 45-year period. At age 49, a stratified sample of trees was destructively harvested for crown length, taper, and specific gravity...

Soil-plant-atmosphere conditions regulating convective cloud formation above southeastern US pine plantations.

PubMed

Manoli, Gabriele; Domec, Jean-Christophe; Novick, Kimberly; Oishi, Andrew Christopher; Noormets, Asko; Marani, Marco; Katul, Gabriel

2016-06-01

Loblolly pine trees (Pinus taeda L.) occupy more than 20% of the forested area in the southern United States, represent more than 50% of the standing pine volume in this region, and remove from the atmosphere about 500 g C m-2 per year through net ecosystem exchange. Hence, their significance as a major regional carbon sink can hardly be disputed. What is disputed is whether the proliferation of young plantations replacing old forest in the southern United States will alter key aspects of the hydrologic cycle, including convective rainfall, which is the focus of the present work. Ecosystem fluxes of sensible (Hs) and latent heat (LE) and large-scale, slowly evolving free atmospheric temperature and water vapor content are known to be first-order controls on the formation of convective clouds in the atmospheric boundary layer. These controlling processes are here described by a zero-order analytical model aimed at assessing how plantations of different ages may regulate the persistence and transition of the atmospheric system between cloudy and cloudless conditions. Using the analytical model together with field observations, the roles of ecosystem Hs and LE on convective cloud formation are explored relative to the entrainment of heat and moisture from the free atmosphere. Our results demonstrate that cloudy-cloudless regimes at the land surface are regulated by a nonlinear relation between the Bowen ratio Bo=Hs/LE and root-zone soil water content, suggesting that young/mature pines ecosystems have the ability to recirculate available water (through rainfall predisposition mechanisms). Such nonlinearity was not detected in a much older pine stand, suggesting a higher tolerance to drought but a limited control on boundary layer dynamics. These results enable the generation of hypotheses about the impacts on convective cloud formation driven by afforestation/deforestation and groundwater depletion projected to increase following increased human population in the southeastern United States. © 2016 John Wiley & Sons Ltd.

Effects of Mountain Pine Beetle on Fuels and Expected Fire Behavior in Lodgepole Pine Forests, Colorado, USA

PubMed Central

Schoennagel, Tania; Veblen, Thomas T.; Negron, José F.; Smith, Jeremy M.

2012-01-01

In Colorado and southern Wyoming, mountain pine beetle (MPB) has affected over 1.6 million ha of predominantly lodgepole pine forests, raising concerns about effects of MPB-caused mortality on subsequent wildfire risk and behavior. Using empirical data we modeled potential fire behavior across a gradient of wind speeds and moisture scenarios in Green stands compared three stages since MPB attack (Red [1–3 yrs], Grey [4–10 yrs], and Old-MPB [∼30 yrs]). MPB killed 50% of the trees and 70% of the basal area in Red and Grey stages. Across moisture scenarios, canopy fuel moisture was one-third lower in Red and Grey stages compared to the Green stage, making active crown fire possible at lower wind speeds and less extreme moisture conditions. More-open canopies and high loads of large surface fuels due to treefall in Grey and Old-MPB stages significantly increased surface fireline intensities, facilitating active crown fire at lower wind speeds (>30–55 km/hr) across all moisture scenarios. Not accounting for low foliar moistures in Red and Grey stages, and large surface fuels in Grey and Old-MPB stages, underestimates the occurrence of active crown fire. Under extreme burning conditions, minimum wind speeds for active crown fire were 25–35 km/hr lower for Red, Grey and Old-MPB stands compared to Green. However, if transition to crown fire occurs (outside the stand, or within the stand via ladder fuels or wind gusts >65 km/hr), active crown fire would be sustained at similar wind speeds, suggesting observed fire behavior may not be qualitatively different among MPB stages under extreme burning conditions. Overall, the risk (probability) of active crown fire appears elevated in MPB-affected stands, but the predominant fire hazard (crown fire) is similar across MPB stages and is characteristic of lodgepole pine forests where extremely dry, gusty weather conditions are key factors in determining fire behavior. PMID:22272268

Limber Pine Dwarf Mistletoe (FIDL)

Treesearch

Jane E. Taylor; Robert L. Mathiason

1999-01-01

Limber pine dwarf mistletoe (Arceuthobium cyanocarpum (A. Nelson ex Rydberg) Coulter & Nelson) is a damaging parasite of limber pine (Pinus flexilis James), whitebark pine (P. albicaulis Engelm.), Rocky Mountain bristlecone pine (P. aristata Engelm.) and Great Basin bristlecone pine (P. longaeva D.K. Bailey). Limber pine dwarf mistletoe occurs in the Rocky...

7 CFR 301.50-10 - Treatments and management method.

Code of Federal Regulations, 2013 CFR

2013-01-01

... chapter to neutralize the pine shoot beetle. (b) Management method for pine bark products. The following... pine (P. sylvestris), red pine (P. resinosa), and jack pine (P. banksiana) trees. Pine bark products... following procedures are followed: (1) For pine bark products produced from trees felled during the period...

7 CFR 301.50-10 - Treatments and management method.

Code of Federal Regulations, 2014 CFR

2014-01-01

... chapter to neutralize the pine shoot beetle. (b) Management method for pine bark products. The following... pine (P. sylvestris), red pine (P. resinosa), and jack pine (P. banksiana) trees. Pine bark products... following procedures are followed: (1) For pine bark products produced from trees felled during the period...

7 CFR 301.50-10 - Treatments and management method.

Code of Federal Regulations, 2011 CFR

2011-01-01

... chapter to neutralize the pine shoot beetle. (b) Management method for pine bark products. The following... pine (P. sylvestris), red pine (P. resinosa), and jack pine (P. banksiana) trees. Pine bark products... following procedures are followed: (1) For pine bark products produced from trees felled during the period...

7 CFR 301.50-10 - Treatments and management method.

Code of Federal Regulations, 2012 CFR

2012-01-01

... chapter to neutralize the pine shoot beetle. (b) Management method for pine bark products. The following... pine (P. sylvestris), red pine (P. resinosa), and jack pine (P. banksiana) trees. Pine bark products... following procedures are followed: (1) For pine bark products produced from trees felled during the period...

Modeling the Differential Sensitivity of Loblolly Pine to Climatic Change Using Tree Rings

Treesearch

Edward R. Cook; Warren L. Nance; Paul J. Krusic; James Grissom

1998-01-01

The Southwide Pine Seed Source Study (SPSSS) was undertaken in 1951 to determine to what extent inherent geographic variation in four southern pine species (loblolly pine, Pinus taeda L.; slash pine, P. elliottii Engelm. var. elliottii; longleaf pine, P. palutris Mill.; and shortleaf pine,

Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana)

PubMed Central

2013-01-01

Background The mountain pine beetle (MPB, Dendroctonus ponderosae) epidemic has affected lodgepole pine (Pinus contorta) across an area of more than 18 million hectares of pine forests in western Canada, and is a threat to the boreal jack pine (Pinus banksiana) forest. Defence of pines against MPB and associated fungal pathogens, as well as other pests, involves oleoresin monoterpenes, which are biosynthesized by families of terpene synthases (TPSs). Volatile monoterpenes also serve as host recognition cues for MPB and as precursors for MPB pheromones. The genes responsible for terpene biosynthesis in jack pine and lodgepole pine were previously unknown. Results We report the generation and quality assessment of assembled transcriptome resources for lodgepole pine and jack pine using Sanger, Roche 454, and Illumina sequencing technologies. Assemblies revealed transcripts for approximately 20,000 - 30,000 genes from each species and assembly analyses led to the identification of candidate full-length prenyl transferase, TPS, and P450 genes of oleoresin biosynthesis. We cloned and functionally characterized, via expression of recombinant proteins in E. coli, nine different jack pine and eight different lodgepole pine mono-TPSs. The newly identified lodgepole pine and jack pine mono-TPSs include (+)-α-pinene synthases, (-)-α-pinene synthases, (-)-β-pinene synthases, (+)-3-carene synthases, and (-)-β-phellandrene synthases from each of the two species. Conclusion In the absence of genome sequences, transcriptome assemblies are important for defence gene discovery in lodgepole pine and jack pine, as demonstrated here for the terpenoid pathway genes. The product profiles of the functionally annotated mono-TPSs described here can account for the major monoterpene metabolites identified in lodgepole pine and jack pine. PMID:23679205

The Widening Gulf between Genomics Data Generation and Consumption: A Practical Guide to Big Data Transfer Technology

PubMed Central

Feltus, Frank A.; Breen, Joseph R.; Deng, Juan; Izard, Ryan S.; Konger, Christopher A.; Ligon, Walter B.; Preuss, Don; Wang, Kuang-Ching

2015-01-01

In the last decade, high-throughput DNA sequencing has become a disruptive technology and pushed the life sciences into a distributed ecosystem of sequence data producers and consumers. Given the power of genomics and declining sequencing costs, biology is an emerging “Big Data” discipline that will soon enter the exabyte data range when all subdisciplines are combined. These datasets must be transferred across commercial and research networks in creative ways since sending data without thought can have serious consequences on data processing time frames. Thus, it is imperative that biologists, bioinformaticians, and information technology engineers recalibrate data processing paradigms to fit this emerging reality. This review attempts to provide a snapshot of Big Data transfer across networks, which is often overlooked by many biologists. Specifically, we discuss four key areas: 1) data transfer networks, protocols, and applications; 2) data transfer security including encryption, access, firewalls, and the Science DMZ; 3) data flow control with software-defined networking; and 4) data storage, staging, archiving and access. A primary intention of this article is to orient the biologist in key aspects of the data transfer process in order to frame their genomics-oriented needs to enterprise IT professionals. PMID:26568680

Big Data Discovery and Access Services through NOAA OneStop

NASA Astrophysics Data System (ADS)

Casey, K. S.; Neufeld, D.; Ritchey, N. A.; Relph, J.; Fischman, D.; Baldwin, R.

2017-12-01

The NOAA OneStop Project was created as a pathfinder effort to to improve the discovery of, access to, and usability of NOAA's vast and diverse collection of big data. OneStop is led by the NOAA/NESDIS National Centers for Environmental Information (NCEI), and is seen as a key NESDIS contribution to NOAA's open data and data stewardship efforts. OneStop consists of an entire framework of services, from storage and interoperable access services at the base, through metadata and catalog services in the middle, to a modern user interface experience at the top. Importantly, it is an open framework where external tools and services can connect at whichever level is most appropriate. Since the beta release of the OneStop user interface at the 2016 Fall AGU meeting, significant progress has been made improving and modernizing many NOAA data collections to optimize their use within the framework. In addition, OneStop has made progress implementing robust metadata management and catalog systems at the collection and granule level and improving the user experience with the web interface. This progress will be summarized and the results of extensive user testing including professional usability studies will be reviewed. Key big data technologies supporting the framework will be presented and a community input sought on the future directions of the OneStop Project.

Pine Gene Discovery Project - Final Report - 08/31/1997 - 02/28/2001

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whetten, R. W.; Sederoff, R. R.; Kinlaw, C.

2001-04-30

Integration of pines into the large scope of plant biology research depends on study of pines in parallel with study of annual plants, and on availability of research materials from pine to plant biologists interested in comparing pine with annual plant systems. The objectives of the Pine Gene Discovery Project were to obtain 10,000 partial DNA sequences of genes expressed in loblolly pine, to determine which of those pine genes were similar to known genes from other organisms, and to make the DNA sequences and isolated pine genes available to plant researchers to stimulate integration of pines into the widermore » scope of plant biology research. Those objectives have been completed, and the results are available to the public. Requests for pine genes have been received from a number of laboratories that would otherwise not have included pine in their research, indicating that progress is being made toward the goal of integrating pine research into the larger molecular biology research community.« less

The Scope of Big Data in One Medicine: Unprecedented Opportunities and Challenges.

PubMed

McCue, Molly E; McCoy, Annette M

2017-01-01

Advances in high-throughput molecular biology and electronic health records (EHR), coupled with increasing computer capabilities have resulted in an increased interest in the use of big data in health care. Big data require collection and analysis of data at an unprecedented scale and represents a paradigm shift in health care, offering (1) the capacity to generate new knowledge more quickly than traditional scientific approaches; (2) unbiased collection and analysis of data; and (3) a holistic understanding of biology and pathophysiology. Big data promises more personalized and precision medicine for patients with improved accuracy and earlier diagnosis, and therapy tailored to an individual's unique combination of genes, environmental risk, and precise disease phenotype. This promise comes from data collected from numerous sources, ranging from molecules to cells, to tissues, to individuals and populations-and the integration of these data into networks that improve understanding of heath and disease. Big data-driven science should play a role in propelling comparative medicine and "one medicine" (i.e., the shared physiology, pathophysiology, and disease risk factors across species) forward. Merging of data from EHR across institutions will give access to patient data on a scale previously unimaginable, allowing for precise phenotype definition and objective evaluation of risk factors and response to therapy. High-throughput molecular data will give insight into previously unexplored molecular pathophysiology and disease etiology. Investigation and integration of big data from a variety of sources will result in stronger parallels drawn at the molecular level between human and animal disease, allow for predictive modeling of infectious disease and identification of key areas of intervention, and facilitate step-changes in our understanding of disease that can make a substantial impact on animal and human health. However, the use of big data comes with significant challenges. Here we explore the scope of "big data," including its opportunities, its limitations, and what is needed capitalize on big data in one medicine.

The Scope of Big Data in One Medicine: Unprecedented Opportunities and Challenges

PubMed Central

McCue, Molly E.; McCoy, Annette M.

2017-01-01

Advances in high-throughput molecular biology and electronic health records (EHR), coupled with increasing computer capabilities have resulted in an increased interest in the use of big data in health care. Big data require collection and analysis of data at an unprecedented scale and represents a paradigm shift in health care, offering (1) the capacity to generate new knowledge more quickly than traditional scientific approaches; (2) unbiased collection and analysis of data; and (3) a holistic understanding of biology and pathophysiology. Big data promises more personalized and precision medicine for patients with improved accuracy and earlier diagnosis, and therapy tailored to an individual’s unique combination of genes, environmental risk, and precise disease phenotype. This promise comes from data collected from numerous sources, ranging from molecules to cells, to tissues, to individuals and populations—and the integration of these data into networks that improve understanding of heath and disease. Big data-driven science should play a role in propelling comparative medicine and “one medicine” (i.e., the shared physiology, pathophysiology, and disease risk factors across species) forward. Merging of data from EHR across institutions will give access to patient data on a scale previously unimaginable, allowing for precise phenotype definition and objective evaluation of risk factors and response to therapy. High-throughput molecular data will give insight into previously unexplored molecular pathophysiology and disease etiology. Investigation and integration of big data from a variety of sources will result in stronger parallels drawn at the molecular level between human and animal disease, allow for predictive modeling of infectious disease and identification of key areas of intervention, and facilitate step-changes in our understanding of disease that can make a substantial impact on animal and human health. However, the use of big data comes with significant challenges. Here we explore the scope of “big data,” including its opportunities, its limitations, and what is needed capitalize on big data in one medicine. PMID:29201868

Relevance of eHealth standards for big data interoperability in radiology and beyond.

PubMed

Marcheschi, Paolo

2017-06-01

The aim of this paper is to report on the implementation of radiology and related information technology standards to feed big data repositories and so to be able to create a solid substrate on which to operate with analysis software. Digital Imaging and Communications in Medicine (DICOM) and Health Level 7 (HL7) are the major standards for radiology and medical information technology. They define formats and protocols to transmit medical images, signals, and patient data inside and outside hospital facilities. These standards can be implemented but big data expectations are stimulating a new approach, simplifying data collection and interoperability, seeking reduction of time to full implementation inside health organizations. Virtual Medical Record, DICOM Structured Reporting and HL7 Fast Healthcare Interoperability Resources (FHIR) are changing the way medical data are shared among organization and they will be the keys to big data interoperability. Until we do not find simple and comprehensive methods to store and disseminate detailed information on the patient's health we will not be able to get optimum results from the analysis of those data.

Where do the Field Plots Belong? A Multiple-Constraint Sampling Design for the BigFoot Project

NASA Astrophysics Data System (ADS)

Kennedy, R. E.; Cohen, W. B.; Kirschbaum, A. A.; Gower, S. T.

2002-12-01

A key component of a MODIS validation project is effective characterization of biophysical measures on the ground. Fine-grain ecological field measurements must be placed strategically to capture variability at the scale of the MODIS imagery. Here we describe the BigFoot project's revised sampling scheme, designed to simultaneously meet three important goals: capture landscape variability, avoid spatial autocorrelation between field plots, and minimize time and expense of field sampling. A stochastic process places plots in clumped constellations to reduce field sampling costs, while minimizing spatial autocorrelation. This stochastic process is repeated, creating several hundred realizations of plot constellations. Each constellation is scored and ranked according to its ability to match landscape variability in several Landsat-based spectral indices, and its ability to minimize field sampling costs. We show how this approach has recently been used to place sample plots at the BigFoot project's two newest study areas, one in a desert system and one in a tundra system. We also contrast this sampling approach to that already used at the four prior BigFoot project sites.

Neuroblastoma, a Paradigm for Big Data Science in Pediatric Oncology

PubMed Central

Salazar, Brittany M.; Balczewski, Emily A.; Ung, Choong Yong; Zhu, Shizhen

2016-01-01

Pediatric cancers rarely exhibit recurrent mutational events when compared to most adult cancers. This poses a challenge in understanding how cancers initiate, progress, and metastasize in early childhood. Also, due to limited detected driver mutations, it is difficult to benchmark key genes for drug development. In this review, we use neuroblastoma, a pediatric solid tumor of neural crest origin, as a paradigm for exploring “big data” applications in pediatric oncology. Computational strategies derived from big data science–network- and machine learning-based modeling and drug repositioning—hold the promise of shedding new light on the molecular mechanisms driving neuroblastoma pathogenesis and identifying potential therapeutics to combat this devastating disease. These strategies integrate robust data input, from genomic and transcriptomic studies, clinical data, and in vivo and in vitro experimental models specific to neuroblastoma and other types of cancers that closely mimic its biological characteristics. We discuss contexts in which “big data” and computational approaches, especially network-based modeling, may advance neuroblastoma research, describe currently available data and resources, and propose future models of strategic data collection and analyses for neuroblastoma and other related diseases. PMID:28035989

Neuroblastoma, a Paradigm for Big Data Science in Pediatric Oncology.

PubMed

Salazar, Brittany M; Balczewski, Emily A; Ung, Choong Yong; Zhu, Shizhen

2016-12-27

Pediatric cancers rarely exhibit recurrent mutational events when compared to most adult cancers. This poses a challenge in understanding how cancers initiate, progress, and metastasize in early childhood. Also, due to limited detected driver mutations, it is difficult to benchmark key genes for drug development. In this review, we use neuroblastoma, a pediatric solid tumor of neural crest origin, as a paradigm for exploring "big data" applications in pediatric oncology. Computational strategies derived from big data science-network- and machine learning-based modeling and drug repositioning-hold the promise of shedding new light on the molecular mechanisms driving neuroblastoma pathogenesis and identifying potential therapeutics to combat this devastating disease. These strategies integrate robust data input, from genomic and transcriptomic studies, clinical data, and in vivo and in vitro experimental models specific to neuroblastoma and other types of cancers that closely mimic its biological characteristics. We discuss contexts in which "big data" and computational approaches, especially network-based modeling, may advance neuroblastoma research, describe currently available data and resources, and propose future models of strategic data collection and analyses for neuroblastoma and other related diseases.

Multifunctional 2D- Materials: Selenides and Halides

NASA Technical Reports Server (NTRS)

Singh, N. B.; Su, Ching Hua; Arnold, Brad; Choa, Fow-Sen; Bohorfous, Sara

2016-01-01

Material is the key component and controls the performance of the detectors, devices and sensors. The materials design, processing, growth and fabrication of bulk and nanocrystals and fabrication into devices and sensors involve multidisciplinary team of experts. This places a large burden on the cost of the novel materials development. Due to this reason there is a big thrust for the prediction of multifunctionality of materials before design and development. Up to some extent design can achieve certain properties. In multinary materials processing is also a big factor. In this presentation, examples of two classes of industrially important materials will be described.

Putting the methodological brakes on claims to measure national happiness through Twitter: Methodological limitations in social media analytics.

PubMed

Jensen, Eric Allen

2017-01-01

With the rapid global proliferation of social media, there has been growing interest in using this existing source of easily accessible 'big data' to develop social science knowledge. However, amidst the big data gold rush, it is important that long-established principles of good social research are not ignored. This article critically evaluates Mitchell et al.'s (2013) study, 'The Geography of Happiness: Connecting Twitter Sentiment and Expression, Demographics, and Objective Characteristics of Place', demonstrating the importance of attending to key methodological issues associated with secondary data analysis.

Precision Health Economics and Outcomes Research to Support Precision Medicine: Big Data Meets Patient Heterogeneity on the Road to Value.

PubMed

Chen, Yixi; Guzauskas, Gregory F; Gu, Chengming; Wang, Bruce C M; Furnback, Wesley E; Xie, Guotong; Dong, Peng; Garrison, Louis P

2016-11-02

The "big data" era represents an exciting opportunity to utilize powerful new sources of information to reduce clinical and health economic uncertainty on an individual patient level. In turn, health economic outcomes research (HEOR) practices will need to evolve to accommodate individual patient-level HEOR analyses. We propose the concept of "precision HEOR", which utilizes a combination of costs and outcomes derived from big data to inform healthcare decision-making that is tailored to highly specific patient clusters or individuals. To explore this concept, we discuss the current and future roles of HEOR in health sector decision-making, big data and predictive analytics, and several key HEOR contexts in which big data and predictive analytics might transform traditional HEOR into precision HEOR. The guidance document addresses issues related to the transition from traditional to precision HEOR practices, the evaluation of patient similarity analysis and its appropriateness for precision HEOR analysis, and future challenges to precision HEOR adoption. Precision HEOR should make precision medicine more realizable by aiding and adapting healthcare resource allocation. The combined hopes for precision medicine and precision HEOR are that individual patients receive the best possible medical care while overall healthcare costs remain manageable or become more cost-efficient.

Precision Health Economics and Outcomes Research to Support Precision Medicine: Big Data Meets Patient Heterogeneity on the Road to Value

PubMed Central

Chen, Yixi; Guzauskas, Gregory F.; Gu, Chengming; Wang, Bruce C. M.; Furnback, Wesley E.; Xie, Guotong; Dong, Peng; Garrison, Louis P.

2016-01-01

The “big data” era represents an exciting opportunity to utilize powerful new sources of information to reduce clinical and health economic uncertainty on an individual patient level. In turn, health economic outcomes research (HEOR) practices will need to evolve to accommodate individual patient–level HEOR analyses. We propose the concept of “precision HEOR”, which utilizes a combination of costs and outcomes derived from big data to inform healthcare decision-making that is tailored to highly specific patient clusters or individuals. To explore this concept, we discuss the current and future roles of HEOR in health sector decision-making, big data and predictive analytics, and several key HEOR contexts in which big data and predictive analytics might transform traditional HEOR into precision HEOR. The guidance document addresses issues related to the transition from traditional to precision HEOR practices, the evaluation of patient similarity analysis and its appropriateness for precision HEOR analysis, and future challenges to precision HEOR adoption. Precision HEOR should make precision medicine more realizable by aiding and adapting healthcare resource allocation. The combined hopes for precision medicine and precision HEOR are that individual patients receive the best possible medical care while overall healthcare costs remain manageable or become more cost-efficient. PMID:27827859

On the relative contributions of wind vs. animals to seed dispersal of four Sierra Nevada pines.

PubMed

Vander Wall, Stephen B

2008-07-01

Selective pressures that influence the form of seed dispersal syndromes are poorly understood. Morphology of plant propagules is often used to infer the means of dispersal, but morphology can be misleading. Several species of pines, for example, have winged seeds adapted for wind dispersal but owe much of their establishment to scatter-hoarding animals. Here the relative importance of wind vs. animal dispersal is assessed for four species of pines of the eastern Sierra Nevada that have winged seeds but differed in seed size: lodgepole pine (Pinus contorta murrayana, 8 mg); ponderosa pine (Pinus ponderosa ponderosa, 56 mg); Jeffrey pine (Pinus jeffreyi, 160 mg); and sugar pine (Pinus lambertiana, 231 mg). Pre-dispersal seed mortality eliminated much of the ponderosa pine seed crop (66%), but had much less effect on Jeffrey pine (32% of seeds destroyed), lodgepole pine (29%), and sugar pine (7%). When cones opened most filled seeds were dispersed by wind. Animals removed > 99% of wind-dispersed Jeffrey and sugar pine seeds from the ground within 60 days, but animals gathered only 93% of lodgepole pine seeds and 38% of ponderosa pine seeds during the same period. Animals gathered and scatter hoarded radioactively labeled ponderosa, Jeffrey, and sugar pine seeds, making a total of 2103 caches over three years of study. Only three lodgepole pine caches were found. Caches typically contained 1-4 seeds buried 5-20 mm deep, depths suitable for seedling emergence. Although Jeffrey and sugar pine seeds are initially wind dispersed, nearly all seedlings arise from animal caches. Lodgepole pine is almost exclusively wind dispersed, with animals acting as seed predators. Animals treated ponderosa pine in an intermediate fashion. Two-phased dispersal of large, winged pine seeds appears adaptive; initial wind dispersal helps to minimize pre-dispersal seed mortality whereas scatter hoarding by animals places seeds in sites with a higher probability of seedling establishment.

A comparative study of soil water movement under different vegetation covers

NASA Astrophysics Data System (ADS)

FERNANDO, A.; Tanaka, T.

2002-05-01

Vegetation, varying widely floristically, structurally, and in spatial distribution, is a complex phenomenon, delicately adjusted within itself and to its broader environment. To investigate the soil water movement of different vegetation covers, soil physical properties, and pressure head of soil water, have been analysed in a pine forest and adjacent disturbed grassland at the Terrestrial Environmental Research Centre (ERC) of Tsukuba University, Japan. Our results of the soil physical properties showed significant differences under different vegetation. At the forest site, the total porosity was nearly constant, i.e. 81% to 84%, from the ground surface to the depth of 70 cm, and decreased uniformly with the depth to reach 63.2% at 150 cm. At the grassland site, the total porosity was about 70% near the ground surface, however, expeditiously decreased to approximately 62% between the depths of 10 and 40 cm. Below these depths the total porosity increased to a maximum of about 77% between the depths of 50 and 80 cm, then decreased again to 54.9% at 150 cm. The total pressure head indicated that the evapotranspiration zone of the pine forest was 70 cm but was 50 cm in the grassland. KEY WORDS: Natural pine forest, Disturbed grassland, Soil water movement, Soil physical properties, Evaporation effective zone.

Slash Pine (Pinus Elliottii), Including South Florida Slash Pine: Nomenclature and Description

Treesearch

Elbert L. Little; Keith W. Dorman

1954-01-01

Slash pine (Pinus elliottii Engelm.), including its variation South Florida slash pine recently distinguished as a new botanical variety, has been known by several different scientific names. As a result, the common name slash pine is more precise and clearer than scientific names. The slash pine of southern Florida differs from typical slash pine in a few characters...

Ecological roles of five-needle pine in Colorado: Potential consequences of their loss

Treesearch

Anna Schoettle

2004-01-01

Limber pine (Pinus flexilis James) and Rocky Mountain bristlecone pine (Pinus aristata Engelm.) are two white pines that grow in Colorado. Limber pine has a broad distribution throughout western North America while bristlecone pine’s distribution is almost entirely within the state of Colorado. White pine blister rust (Cronartium ribicola J. C. Fisch.) was...

Shortleaf pine hybrids: growth and tip moth damage in southeast Mississippi

Treesearch

Larry H. Lott; Maxine T. Highsmith; C. Dana Nelson

2007-01-01

It is well known that shortleaf pine (Pinus echinata Mill.), loblolly pine (Pinus taeda L.), and Virginia pine (Pinus virginiana Mill.) sustain significantly more Nantucket pine tip moth (Rhyacionia frustrana Comst.) damage than do slash pine (Pinus elliotti var. ...

Image Mosaicking Approach for a Double-Camera System in the GaoFen2 Optical Remote Sensing Satellite Based on the Big Virtual Camera.

PubMed

Cheng, Yufeng; Jin, Shuying; Wang, Mi; Zhu, Ying; Dong, Zhipeng

2017-06-20

The linear array push broom imaging mode is widely used for high resolution optical satellites (HROS). Using double-cameras attached by a high-rigidity support along with push broom imaging is one method to enlarge the field of view while ensuring high resolution. High accuracy image mosaicking is the key factor of the geometrical quality of complete stitched satellite imagery. This paper proposes a high accuracy image mosaicking approach based on the big virtual camera (BVC) in the double-camera system on the GaoFen2 optical remote sensing satellite (GF2). A big virtual camera can be built according to the rigorous imaging model of a single camera; then, each single image strip obtained by each TDI-CCD detector can be re-projected to the virtual detector of the big virtual camera coordinate system using forward-projection and backward-projection to obtain the corresponding single virtual image. After an on-orbit calibration and relative orientation, the complete final virtual image can be obtained by stitching the single virtual images together based on their coordinate information on the big virtual detector image plane. The paper subtly uses the concept of the big virtual camera to obtain a stitched image and the corresponding high accuracy rational function model (RFM) for concurrent post processing. Experiments verified that the proposed method can achieve seamless mosaicking while maintaining the geometric accuracy.

The use of big data in transfusion medicine.

PubMed

Pendry, K

2015-06-01

'Big data' refers to the huge quantities of digital information now available that describe much of human activity. The science of data management and analysis is rapidly developing to enable organisations to convert data into useful information and knowledge. Electronic health records and new developments in Pathology Informatics now support the collection of 'big laboratory and clinical data', and these digital innovations are now being applied to transfusion medicine. To use big data effectively, we must address concerns about confidentiality and the need for a change in culture and practice, remove barriers to adopting common operating systems and data standards and ensure the safe and secure storage of sensitive personal information. In the UK, the aim is to formulate a single set of data and standards for communicating test results and so enable pathology data to contribute to national datasets. In transfusion, big data has been used for benchmarking, detection of transfusion-related complications, determining patterns of blood use and definition of blood order schedules for surgery. More generally, rapidly available information can monitor compliance with key performance indicators for patient blood management and inventory management leading to better patient care and reduced use of blood. The challenges of enabling reliable systems and analysis of big data and securing funding in the restrictive financial climate are formidable, but not insurmountable. The promise is that digital information will soon improve the implementation of best practice in transfusion medicine and patient blood management globally. © 2015 British Blood Transfusion Society.

Climate influences on whitebark pine mortality from mountain pine beetle in the Greater Yellowstone Ecosystem

Treesearch

Polly C. Buotte; Jeffrey A. Hicke; Haiganoush K. Preisler; John T. Abatzoglou; Kenneth F. Raffa; Jesse A. Logan

2016-01-01

Extensive mortality of whitebark pine, beginning in the early to mid-2000s, occurred in the Greater Yellowstone Ecosystem (GYE) of the western USA, primarily from mountain pine beetle but also from other threats such as white pine blister rust. The climatic drivers of this recent mortality and the potential for future whitebark pine mortality from mountain pine beetle...

Mapping quantitative trait loci controlling early growth in a (longleaf pine × slash pine) × slash pine BC1 family

Treesearch

C. Weng; Thomas L. Kubisiak; C. Dana Nelson; M. Stine

2002-01-01

Random amplified polymorphic DNA (RAPD) markers were employed to map the genome and quantitative trait loci controlling the early growth of a pine hybrid F1 tree (Pinus palustris Mill. × P. elliottii Engl.) and a recurrent slash pine tree (P. ellottii Engl.) in a (longleaf pine × slash pine...

Mountain pine beetles use volatile cues to locate host limber pine and avoid non-host Great Basin bristlecone pine

Treesearch

Curtis A. Gray; Justin B. Runyon; Michael J. Jenkins; Andrew D. Giunta

2015-01-01

The tree-killing mountain pine beetle (Dendroctonus ponderosae Hopkins) is an important disturbance agent of western North American forests and recent outbreaks have affected tens of millions of hectares of trees. Most western North American pines (Pinus spp.) are hosts and are successfully attacked by mountain pine beetles whereas a handful of pine species are not...

Freeze injury to southern pine seedlings

Treesearch

David B. South

2006-01-01

Freeze injury to roots and shoots of pines is affected by genotype and nursery practices. Local sources of shortleaf pine and Virginia pine that are grown in nurseries in USDA hardiness Zones 6 and 7a are relatively freeze tolerant. However, loblolly pine, slash pine, and longleaf pine seedlings have been injured by a number of freeze events (0 to 24 °F) in hardiness...

Production of polygalacturonase and increase of longitudinal gas permeability in southern pine by brown-rot and white-rot fungi

Treesearch

Frederick Green; Carol A. Clausen

1999-01-01

Hydrolysis of bordered and pinoid pits may be a key event during colonization of wood by decay fungi. Although pits are numerous, studies of pectin-hydrolyzing enzymes in wood decay fungi are scarce, probably because of the relatively low content (less than 4 %) of pectin in wood and because of the primary focus on understanding the degradation of lignified components...

Pine nut use in the Early Holocene and beyond: The danger cave archaeobotanical record

USGS Publications Warehouse

Rhode, D.; Madsen, D.B.

1998-01-01

Nuts of limber pine (Pinus flexilis) from Early Holocene strata in Danger Cave, Utah, are distinguishable by seed-coat sculpturing from pine nuts of single-needled pinyon (Pinus monophylla), which occur in strata dating <7000 years BP. Owls and other taphonomic agents may deposit pine nuts in archaeological sites, but the morphology of the pine nuts in Danger Cave strongly indicate they were deposited by human foragers who brought small quantities with them for food for at least the last 7500 years. Large-scale transport of pine nuts to Danger Cave from distant hinterlands is unlikely, however. The seamless transition from limber pine to pinyon pine nuts in the Danger Cave record suggests that foragers who had utilized limber pine as a food resource easily switched to using pinyon pine nuts when pinyon pine migrated into the region at the close of the Early Holocene.

How the pine seeds attach to/detach from the pine cone scale?

PubMed

Song, Kahye; Chang, Shyr-Shea; Lee, Sang Joon

2017-01-01

One of the primary purposes of pine cones is the protection and distant dispersal of pine seeds. Pine cones open and release their embedded seeds on dry and windy days for long-distance dispersal. In this study, how the pine seed attach to/ detach from the pine cone scale for efficient seed dispersal were experimentally investigated by using X-ray micro-imaging technique. The cone and seeds adhere to one another in the presence of water, which could be explained by the surface tension and the contact angle hysteresis. Otherwise, without water, the waterproof seed wing surface permits rapid drying for detach and dispersion. On the other hand, during wildfires, pine cones open their seed racks and detach the pine seeds from pine cones for rapid seed dispersal. Due to these structural advantages, pine seeds are released safely and efficiently on adjust condition. These advantageous structure could be mimicked in practical applications.

How To Stay Stuck in the Wrong Career.

ERIC Educational Resources Information Center

Ibarra, Herminia

2002-01-01

An effective midlife career change is challenging to bring about successfully. Identity and its relationship to work are key factors. A three-point plan to a successful career change includes the following: know thyself, consult trusted advisors, and think big. (JOW)

Management Information Systems.

ERIC Educational Resources Information Center

Finlayson, Jean, Ed.

1989-01-01

This collection of papers addresses key questions facing college managers and others choosing, introducing, and living with big, complex computer-based systems. "What Use the User Requirement?" (Tony Coles) stresses the importance of an information strategy driven by corporate objectives, not technology. "Process of Selecting a…

Mountain Pine Beetles Use Volatile Cues to Locate Host Limber Pine and Avoid Non-Host Great Basin Bristlecone Pine

PubMed Central

Gray, Curtis A.; Runyon, Justin B.; Jenkins, Michael J.; Giunta, Andrew D.

2015-01-01

The tree-killing mountain pine beetle (Dendroctonus ponderosae Hopkins) is an important disturbance agent of western North American forests and recent outbreaks have affected tens of millions of hectares of trees. Most western North American pines (Pinus spp.) are hosts and are successfully attacked by mountain pine beetles whereas a handful of pine species are not suitable hosts and are rarely attacked. How pioneering females locate host trees is not well understood, with prevailing theory involving random landings and/or visual cues. Here we show that female mountain pine beetles orient toward volatile organic compounds (VOCs) from host limber pine (Pinus flexilis James) and away from VOCs of non-host Great Basin bristlecone pine (Pinus longaeva Bailey) in a Y-tube olfactometer. When presented with VOCs of both trees, females overwhelmingly choose limber pine over Great Basin bristlecone pine. Analysis of VOCs collected from co-occurring limber and Great Basin bristlecone pine trees revealed only a few quantitative differences. Noticeable differences included the monoterpenes 3-carene and D-limonene which were produced in greater amounts by host limber pine. We found no evidence that 3-carene is important for beetles when selecting trees, it was not attractive alone and its addition to Great Basin bristlecone pine VOCs did not alter female selection. However, addition of D-limonene to Great Basin bristlecone pine VOCs disrupted the ability of beetles to distinguish between tree species. When presented alone, D-limonene did not affect behavior, suggesting that the response is mediated by multiple compounds. A better understanding of host selection by mountain pine beetles could improve strategies for managing this important forest insect. Moreover, elucidating how Great Basin bristlecone pine escapes attack by mountain pine beetles could provide insight into mechanisms underlying the incredible longevity of this tree species. PMID:26332317

Hurricane Katrina winds damaged longleaf pine less than loblolly pine

Treesearch

Kurt H. Johnsen; John R. Butnor; John S. Kush; Ronald C. Schmidtling; C. Dana Nelson

2009-01-01

Some evidence suggests that longleaf pine might be more tolerant of high winds than either slash pine (Pinus elliotii Englem.) or loblolly pine (Pinus taeda L.). We studied wind damage to these three pine species in a common garden experiment in southeast Mississippi following Hurricane Katrina,...

Pine needle abortion biomarker detected in bovine fetal fluids

USDA-ARS?s Scientific Manuscript database

Pine needle abortion is a naturally occurring condition in free-range cattle caused by the consumption of pine needles from select species of cypress, juniper, pine, and spruce trees. Confirmatory diagnosis of pine needle abortion has previously relied on a combined case history of pine needle cons...

Successional trends of six mature shortleaf pine forests in Missouri

Treesearch

Michael C. Stambaugh; Rose-Marie Muzika

2007-01-01

Many of Missouri's mature oak-shortleaf pine (Quercus-Pinus echinata) forests are in a mid-transition stage characterized by partial pine overstory, limited pine recruitment, and minimal pine regeneration. Restoration of shortleaf pine communities at a large scale necessitates the understanding and management of natural regeneration. To...

The importance of shortleaf pine for wildlife and diversity in mixed oak-pine forests and in pine-grassland woodlands

Treesearch

Ronald E. Masters

2007-01-01

Shortleaf pine, by virtue of its wide distribution and occurrence in many forest types in eastern North America, is an important species that provides high habitat value for many wildlife species. Shortleaf pine functions as a structural habitat element in both mixed oak-pine forests and in pine-grassland woodlands. It also adds diversity throughout all stages of plant...

Establishing Longleaf Pine Seedlings Under a Loblolly Pine Canopy (User’s Guide)

DTIC Science & Technology

2017-02-01

converting loblolly pine stands to longleaf pine dominance ..................... 5 3. WHERE DO THE GUIDELINES APPLY? GEOGRAPHIC, EDAPHIC, AND STAND STRUCTURE ...watching, hunting, and off-road vehicle use, and yield valuable products including quality saw- timber and pine needles for landscaping. Longleaf pines...U.S. Fish and Wildlife Service 2003). The foraging habitat guidelines specify characteristics of the pine canopy structure , the abundance of

Genetic diversity within and among populations of shortleaf pine (Pinus echinata Mill.) and loblolly pine (Pinus taeda L.)

Treesearch

Shiqin Xu; C.G. Tauer; C. Dana Nelson

2008-01-01

Shortleaf pine (n=93) and loblolly pine (n=112) trees representing 22 seed sources or 16 physiographic populations were sampled from Southwide Southern Pine Seed Source Study plantings located in Oklahoma, Arkansas and Mississippi. The sampled trees were grown from shortleaf pine and loblolly pine seeds formed in 1951 and 1952, prior to the start of intensive forest...

Restoration planting options for limber pines impacted by mountain pine beetles and/or white pine blister rust in the Southern Rocky Mountains

Treesearch

Anne Marie Casper; William R. Jacobi; Anna W. Schoettle; Kelly S. Burns

2010-01-01

Limber Pine (Pinus flexilis) populations in the southern Rock Mountains are severely threatened by the combined impacts of mountain pine beetles and white pine blister rust. Limber pine’s critical role these high elevation ecosystems heightens the importance of mitigating impacts. To develop forest-scale planting methods six seedling planting trial sites were installed...

Making big data useful for health care: a summary of the inaugural mit critical data conference.

PubMed

Badawi, Omar; Brennan, Thomas; Celi, Leo Anthony; Feng, Mengling; Ghassemi, Marzyeh; Ippolito, Andrea; Johnson, Alistair; Mark, Roger G; Mayaud, Louis; Moody, George; Moses, Christopher; Naumann, Tristan; Pimentel, Marco; Pollard, Tom J; Santos, Mauro; Stone, David J; Zimolzak, Andrew

2014-08-22

With growing concerns that big data will only augment the problem of unreliable research, the Laboratory of Computational Physiology at the Massachusetts Institute of Technology organized the Critical Data Conference in January 2014. Thought leaders from academia, government, and industry across disciplines-including clinical medicine, computer science, public health, informatics, biomedical research, health technology, statistics, and epidemiology-gathered and discussed the pitfalls and challenges of big data in health care. The key message from the conference is that the value of large amounts of data hinges on the ability of researchers to share data, methodologies, and findings in an open setting. If empirical value is to be from the analysis of retrospective data, groups must continuously work together on similar problems to create more effective peer review. This will lead to improvement in methodology and quality, with each iteration of analysis resulting in more reliability.

Integrating modelling and smart sensors for environmental and human health

PubMed Central

Reis, Stefan; Seto, Edmund; Northcross, Amanda; Quinn, Nigel W.T.; Convertino, Matteo; Jones, Rod L.; Maier, Holger R.; Schlink, Uwe; Steinle, Susanne; Vieno, Massimo; Wimberly, Michael C.

2015-01-01

Sensors are becoming ubiquitous in everyday life, generating data at an unprecedented rate and scale. However, models that assess impacts of human activities on environmental and human health, have typically been developed in contexts where data scarcity is the norm. Models are essential tools to understand processes, identify relationships, associations and causality, formalize stakeholder mental models, and to quantify the effects of prevention and interventions. They can help to explain data, as well as inform the deployment and location of sensors by identifying hotspots and areas of interest where data collection may achieve the best results. We identify a paradigm shift in how the integration of models and sensors can contribute to harnessing ‘Big Data’ and, more importantly, make the vital step from ‘Big Data’ to ‘Big Information’. In this paper, we illustrate current developments and identify key research needs using human and environmental health challenges as an example. PMID:26644778

Utilizing electronic health records to predict acute kidney injury risk and outcomes: workgroup statements from the 15(th) ADQI Consensus Conference.

PubMed

Sutherland, Scott M; Chawla, Lakhmir S; Kane-Gill, Sandra L; Hsu, Raymond K; Kramer, Andrew A; Goldstein, Stuart L; Kellum, John A; Ronco, Claudio; Bagshaw, Sean M

2016-01-01

The data contained within the electronic health record (EHR) is "big" from the standpoint of volume, velocity, and variety. These circumstances and the pervasive trend towards EHR adoption have sparked interest in applying big data predictive analytic techniques to EHR data. Acute kidney injury (AKI) is a condition well suited to prediction and risk forecasting; not only does the consensus definition for AKI allow temporal anchoring of events, but no treatments exist once AKI develops, underscoring the importance of early identification and prevention. The Acute Dialysis Quality Initiative (ADQI) convened a group of key opinion leaders and stakeholders to consider how best to approach AKI research and care in the "Big Data" era. This manuscript addresses the core elements of AKI risk prediction and outlines potential pathways and processes. We describe AKI prediction targets, feature selection, model development, and data display.

Making Big Data Useful for Health Care: A Summary of the Inaugural MIT Critical Data Conference

PubMed Central

2014-01-01

With growing concerns that big data will only augment the problem of unreliable research, the Laboratory of Computational Physiology at the Massachusetts Institute of Technology organized the Critical Data Conference in January 2014. Thought leaders from academia, government, and industry across disciplines—including clinical medicine, computer science, public health, informatics, biomedical research, health technology, statistics, and epidemiology—gathered and discussed the pitfalls and challenges of big data in health care. The key message from the conference is that the value of large amounts of data hinges on the ability of researchers to share data, methodologies, and findings in an open setting. If empirical value is to be from the analysis of retrospective data, groups must continuously work together on similar problems to create more effective peer review. This will lead to improvement in methodology and quality, with each iteration of analysis resulting in more reliability. PMID:25600172

Water-quality, phytoplankton, and trophic-status characteristics of Big Base and Little Base lakes, Little Rock Air Force Base, Arkansas, 2003-2004

USGS Publications Warehouse

Justus, B.G.

2005-01-01

Little Rock Air Force Base is the largest C-130 base in the Air Force and is the only C-130 training base in the Department of Defense. Little Rock Air Force Base is located in central Arkansas near the eastern edge of the Ouachita Mountains, near the Mississippi Alluvial Plain, and within the Arkansas Valley Ecoregion. Habitats include upland pine forests, upland deciduous forest, broad-leaved deciduous swamps, and two small freshwater lakes?Big Base Lake and Little Base Lake. Big Base and Little Base Lakes are used primarily for recreational fishing by base personnel and the civilian public. Under normal (rainfall) conditions, Big Base Lake has a surface area of approximately 39 acres while surface area of Little Base Lake is approximately 1 acre. Little Rock Air Force Base personnel are responsible for managing the fishery in these two lakes and since 1999 have started a nutrient enhancement program that involves sporadically adding fertilizer to Big Base Lake. As a means of determining the relations between water quality and primary production, Little Rock Air Force Base personnel have a need for biological (phytoplankton density), chemical (dissolved-oxygen and nutrient concentrations), and physical (water temperature and light transparency) data. To address these monitoring needs, the U.S. Geological Survey in cooperation with Little Rock Air Force Base, conducted a study to collect and analyze biological, chemical, and physical data. The U.S. Geological Survey sampled water quality in Big Base Lake and Little Base Lake on nine occasions from July 2003 through June 2004. Because of the difference in size, two sampling sites were established on Big Base Lake, while only one site was established on Little Base Lake. Lake profile data for Big Base Lake indicate that low dissolved- oxygen concentrations in the hypolimnion probably constrain most fish species to the upper 5-6 feet of depth during the summer stratification period. Dissolved-oxygen concentrations in Big Base Lake below a depth of 6 feet generally were less than 3 milligrams per liter for summer months that were sampled in 2003 and 2004. Some evidence indicates that phosphorus was limiting primary production during the sampling period. Dissolved nitrogen constituents frequently were detected in water samples (indicating availability) but dissolved phosphorus constituents-orthophosphorus and dissolved phosphorus-were not detected in any samples collected at the two lakes. The absence of dissolved phosphorus constituents and presence of total phosphorus indicates that all phosphorus was bound to suspended material (sediment particles and living organisms). Nitrogen:phosphorus ratios on most sampling occasions tended to be slightly higher than 16:1, which can be interpreted as further indication that phosphorus could be limiting primary production to some extent. An alkalinity of 20 milligrams per liter of calcium carbonate or higher is recommended to optimize nutrient availability and buffering capacity in recreational fishing lakes and ponds. Median values for water samples collected at the three sites ranged from 12-13 milligrams per liter of calcium carbonate. Alkalinities ranged from 9-60 milligrams per liter of calcium carbonate, but 13 of 17 samples collected at the deepest site had alkalinities less than 20 milligrams per liter of calcium carbonate. Results of three trophic-state indices, and a general trophic classification, as well as abundant green algae and large growths of blue-green algae indicate that Big Base Lake may be eutrophic. Trophic-state index values calculated using total phosphorus, chlorophyll a, and Secchi disc measurements from both lakes generally exceeded criteria at which lakes are considered to be eutrophic. A second method of determining lake trophic status-the general trophic classification-categorized the three sampling sites as mesotrophic or eutrophic. Green algae were found to be in abundance throughout mos

Potential for long-term seed storage for ex situ genetic conservation of high elevation white pine species – whitebark pine and foxtail pine case study

Treesearch

R.A. Sniezko; A.J. Kegley

2017-01-01

Whitebark pine (Pinus albicaulis) and foxtail pine (P. balfouriana) are conifers native to western North America. Due to several threats, including a non-native pathogen (Cronartium ribicola) and a changing climate, whitebark pine and foxtail pine are classified on the IUCN Red List as ‘endangered’ and ‘...

How to Identify and Manage Pine Wilt Disease and Treat Wood Products Infested by the Pinewood Nematodes

Treesearch

Jim Hanson; Michelle Cram

2004-01-01

Pine wilt is a disease of pine (Pinus spp.) caused by the pinewood nematode, Bursaphelenchus xylophilus. The pinewood nematode is native to North America and is not considered a primary pathogen of native pines, but is the cause of pine wilt in some non-native pines. In countries where the pinewood nematode has been introduced, such as Japan and China, pine wilt is an...

Underplanting shortleaf pine at Coldwater Conservation Area in Missouri

Treesearch

Jason Jensen; David Gwaze

2007-01-01

Restoring shortleaf pine throughout its native range in the Ozark Highlands is a high priority in Missouri. Restoring shortleaf pine on former pine and oak-pine sites is a longterm strategy for mitigating chronic oak decline (Law et al. 2004). Underplanting or preharvest planting is one method that has potential for restoring shortleaf pine.

White-pine weevil attack: susceptibility of western white pine in the Northeast

Treesearch

Ronald C. Wilkinson

1981-01-01

Heights were measured and white-pine weevil (Pissodes strobi (Peck)) attacks were recorded on 668 western white pines (Pinus monticola Douglas) interplanted among 109 eastern white pines (Pinus strobus L.) in a 10-year-old plantation in southern Maine. Less than 13 percent of the western white pines were...

Whitebark and limber pine restoration and monitoring in Glacier National Park

Treesearch

Jennifer M. Asebrook; Joyce Lapp; Tara. Carolin

2011-01-01

Whitebark pine (Pinus albicaulis) and limber pine (Pinus flexilis) are keystone species important to watersheds, grizzly and black bears, squirrels, birds, and other wildlife. Both high elevation five-needled pines have dramatically declined in Glacier National Park primarily due to white pine blister rust (Cronartium ribicola) and fire exclusion, with mountain pine...

The lodgepole × jack pine hybrid zone in Alberta, Canada: a stepping stone for the mountain pine beetle on its journey East across the boreal forest?

PubMed

Lusebrink, Inka; Erbilgin, Nadir; Evenden, Maya L

2013-09-01

Historical data show that outbreaks of the tree killing mountain pine beetle are often preceded by periods of drought. Global climate change impacts drought frequency and severity and is implicated in the range expansion of the mountain pine beetle into formerly unsuitable habitats. Its expanded range has recently reached the lodgepole × jack pine hybrid zone in central Alberta, Canada, which could act as a transition from its historical lodgepole pine host to a jack pine host present in the boreal forest. This field study tested the effects of water limitation on chemical defenses of mature trees against mountain pine beetle-associated microorganisms and on beetle brood success in lodgepole × jack pine hybrid trees. Tree chemical defenses as measured by monoterpene emission from tree boles and monoterpene concentration in needles were greater in trees that experienced water deficit compared to well-watered trees. Myrcene was identified as specific defensive compound, since it significantly increased upon inoculation with dead mountain pine beetles. Beetles reared in bolts from trees that experienced water deficit emerged with a higher fat content, demonstrating for the first time experimentally that drought conditions benefit mountain pine beetles. Further, our study demonstrated that volatile chemical emission from tree boles and phloem chemistry place the hybrid tree chemotype in-between lodgepole pine and jack pine, which might facilitate the host shift from lodgepole pine to jack pine.

Climate influences on whitebark pine mortality from mountain pine beetle in the Greater Yellowstone Ecosystem.

PubMed

Buotte, Polly C; Hicke, Jeffrey A; Preisler, Haiganoush K; Abatzoglou, John T; Raffa, Kenneth F; Logan, Jesse A

2016-12-01

Extensive mortality of whitebark pine, beginning in the early to mid-2000s, occurred in the Greater Yellowstone Ecosystem (GYE) of the western USA, primarily from mountain pine beetle but also from other threats such as white pine blister rust. The climatic drivers of this recent mortality and the potential for future whitebark pine mortality from mountain pine beetle are not well understood, yet are important considerations in whether to list whitebark pine as a threatened or endangered species. We sought to increase the understanding of climate influences on mountain pine beetle outbreaks in whitebark pine forests, which are less well understood than in lodgepole pine, by quantifying climate-beetle relationships, analyzing climate influences during the recent outbreak, and estimating the suitability of future climate for beetle outbreaks. We developed a statistical model of the probability of whitebark pine mortality in the GYE that included temperature effects on beetle development and survival, precipitation effects on host tree condition, beetle population size, and stand characteristics. Estimated probability of whitebark pine mortality increased with higher winter minimum temperature, indicating greater beetle winter survival; higher fall temperature, indicating synchronous beetle emergence; lower two-year summer precipitation, indicating increased potential for host tree stress; increasing beetle populations; stand age; and increasing percent composition of whitebark pine within a stand. The recent outbreak occurred during a period of higher-than-normal regional winter temperatures, suitable fall temperatures, and low summer precipitation. In contrast to lodgepole pine systems, area with mortality was linked to precipitation variability even at high beetle populations. Projections from climate models indicate future climate conditions will likely provide favorable conditions for beetle outbreaks within nearly all current whitebark pine habitat in the GYE by the middle of this century. Therefore, when surviving and regenerating trees reach ages suitable for beetle attack, there is strong potential for continued whitebark pine mortality due to mountain pine beetle. © 2016 by the Ecological Society of America.

Synchrony of forest responses to climate from the aspect of tree mortality in South Korea

NASA Astrophysics Data System (ADS)

Kim, M.; Lee, W. K.; Piao, D.; Choi, G. M.; Gang, H. U.

2016-12-01

Mortality is a key process in forest-stand dynamics. However, tree mortality is not well understood, particularly in relation to climatic factors. The objectives of this study were to: (i) determine the patterns of maximum stem number (MSN) per ha over dominant tree height from 5-year remeasurements of the permanent sample plots for temperate forests [Red pine (Pinus densiflora), Japanese larch (Larix kaempferi), Korean pine (Pinus koraiensis), Chinese cork oak (Quercus variabilis), and Mongolian oak (Quercus mongolica)] using Sterba's theory and Korean National Forest Inventory (NFI) data, (ii) develop a stand-level mortality (self-thinning) model using the MSN curve, and (iii) assess the impact of temperature on tree mortality in semi-variogram and linear regression models. The MSN curve represents the upper range of observed stem numbers per ha. The mortality model and validation statistic reveal significant differences between the observed data and the model predictions (R2 = 0.55-0.81), and no obvious dependencies or patterns that indicate systematic trends between the residuals and the independent variable. However, spatial autocorrelation was detected from residuals of coniferous species (Red pine, Japanese larch and Korean pine), but not of oak species (Chinese cork oak and Mongolian oak). Based on linear regression from residuals, we found that the mortality of coniferous forests tended to increase when the annual mean temperature increased. Conversely, oak mortality nonsignificantly decreased with increasing temperature. These findings indicate that enhanced tree mortality due to rising temperatures in response to climate change is possible, especially in coniferous forests, and are expected to contribute to policy decisions to support and forest management practices.

Response of central Siberian Scots pine to soil water deficit and long-term trends in atmospheric CO2 concentration

NASA Astrophysics Data System (ADS)

Arneth, A.; Lloyd, J.; Šantrůčková, H.; Bird, M.; Grigoryev, S.; Kalaschnikov, Y. N.; Gleixner, G.; Schulze, E.-D.

2002-01-01

Twenty tree ring 13C / 12C ratio chronologies from Pinus sylvestris (Scots pine) trees were determined from five locations sampled along the Yenisei River, spaced over a total distance of ~1000 km between the cities of Turuhansk (66°N) and Krasnoyarsk (56°N). The transect covered the major part of the natural distribution of Scots pine in the region with median growing season temperatures and precipitation varying from 12.2°C and 218 mm to 14.0°C and 278 mm for Turuhansk and Krasnoyarsk, respectively. A key focus of the study was to investigate the effects of variations in temperature, precipitation, and atmospheric CO2 concentration on long- and short-term variation in photosynthetic 13C discrimination during photosynthesis and the marginal cost of tree water use, as reflected in the differences in the historical records of the 13C / 12C ratio in wood cellulose compared to that of the atmosphere (Δ13Cc). In 17 of the 20 samples, trees Δ13Cc has declined during the last 150 years, particularly so during the second half of the twentieth century. Using a model of stomatal behaviour combined with a process-based photosynthesis model, we deduce that this trend indicates a long-term decrease in canopy stomatal conductance, probably in response to increasing atmospheric CO2 concentrations. This response being observed for most trees along the transect is suggestive of widespread decreases in Δ13Cc and increased water use efficiency for Scots pine in central Siberia over the last century. Overlying short-term variations in Δ13Cc were also accounted for by the model and were related to variations in growing season soil water deficit and atmospheric humidity.

Small species indicate big changes? Arctic report card

USDA-ARS?s Scientific Manuscript database

As Arctic climate warms, how will terrestrial ecosystems and the communities that they support respond in the coming decades? Small mammals including shrews and their associated parasites can serve as key indicators and proxies of accelerating perturbation, contributing to general models for anticip...

The community-driven BiG CZ software system for integration and analysis of bio- and geoscience data in the critical zone

NASA Astrophysics Data System (ADS)

Aufdenkampe, A. K.; Mayorga, E.; Horsburgh, J. S.; Lehnert, K. A.; Zaslavsky, I.; Valentine, D. W., Jr.; Richard, S. M.; Cheetham, R.; Meyer, F.; Henry, C.; Berg-Cross, G.; Packman, A. I.; Aronson, E. L.

2014-12-01

Here we present the prototypes of a new scientific software system designed around the new Observations Data Model version 2.0 (ODM2, https://github.com/UCHIC/ODM2) to substantially enhance integration of biological and Geological (BiG) data for Critical Zone (CZ) science. The CZ science community takes as its charge the effort to integrate theory, models and data from the multitude of disciplines collectively studying processes on the Earth's surface. The central scientific challenge of the CZ science community is to develop a "grand unifying theory" of the critical zone through a theory-model-data fusion approach, for which the key missing need is a cyberinfrastructure for seamless 4D visual exploration of the integrated knowledge (data, model outputs and interpolations) from all the bio and geoscience disciplines relevant to critical zone structure and function, similar to today's ability to easily explore historical satellite imagery and photographs of the earth's surface using Google Earth. This project takes the first "BiG" steps toward answering that need. The overall goal of this project is to co-develop with the CZ science and broader community, including natural resource managers and stakeholders, a web-based integration and visualization environment for joint analysis of cross-scale bio and geoscience processes in the critical zone (BiG CZ), spanning experimental and observational designs. We will: (1) Engage the CZ and broader community to co-develop and deploy the BiG CZ software stack; (2) Develop the BiG CZ Portal web application for intuitive, high-performance map-based discovery, visualization, access and publication of data by scientists, resource managers, educators and the general public; (3) Develop the BiG CZ Toolbox to enable cyber-savvy CZ scientists to access BiG CZ Application Programming Interfaces (APIs); and (4) Develop the BiG CZ Central software stack to bridge data systems developed for multiple critical zone domains into a single metadata catalog. The entire BiG CZ Software system is being developed on public repositories as a modular suite of open source software projects. It will be built around a new Observations Data Model Version 2.0 (ODM2) that has been developed by members of the BiG CZ project team, with community input, under separate funding.

The concept lens diagram: a new mechanism for presenting biochemistry content in terms of "big ideas".

PubMed

Rowland, Susan L; Smith, Christopher A; Gillam, Elizabeth M A; Wright, Tony

2011-07-01

A strong, recent movement in tertiary education is the development of conceptual, or "big idea" teaching. The emphasis in course design is now on promoting key understandings, core competencies, and an understanding of connections between different fields. In biochemistry teaching, this radical shift from the content-based tradition is being driven by the "omics" information explosion; we can no longer teach all the information we have available. Biochemistry is a core, enabling discipline for much of modern scientific research, and biochemistry teaching is in urgent need of a method for delivery of conceptual frameworks. In this project, we aimed to define the key concepts in biochemistry. We find that the key concepts we defined map well onto the core science concepts recommended by the Vision and Change project. We developed a new method to present biochemistry through the lenses of these concepts. This new method challenged the way we thought about biochemistry as teachers. It also stimulated the majority of the students to think more deeply about biochemistry and to make links between biochemistry and material in other courses. This method is applicable to the full spectrum of content usually taught in biochemistry. Copyright © 2011 Wiley Periodicals, Inc.

European Pine Shoot Moth

Treesearch

William E. Miller; Arthur R. Hastings; John F. Wootten

1961-01-01

In the United States, the European pine shoot moth has caused much damage in young, plantations of red pine. It has been responsible for reduced planting of red pine in many areas. Although attacked trees rarely if ever die, their growth is inhibited and many are, deformed. Scotch pine and Austrian pine (Pinus nigra Arnold) are usually not so badly damaged. Swiss...

A ponderosa pine-lodgepole pine spacing study in central Oregon: results after 20 years.

Treesearch

K.W. Seidel

1989-01-01

The growth response after 20 years from an initial spacing study established in a ponderosa pine (Pinus ponderosa Dougl. ex Laws.) and lodgepole pine (Pinus contorta Dougl. ex Loud.) plantation was measured in central Oregon. The study was designed to compare the growth rates of pure ponderosa pine, pure lodgepole pine, and a...

Relative Suitability of Virginia Pine and Loblolly Pine as Host Species for Dendroctonus frontalis (Coleoptera: Scolytidae)

Treesearch

Jessica S. Veysey; Matthew P. Ayres; Maria J. Lombardero; Richard W. Hofstetter; Kier D. Klepzig

2003-01-01

Dendroctonus frontalis is a major disturbance agent in American pine forests, but attack preferences for various host species, and their relative suitability for reproduction, are poorly knowi). We studied patterns of beetle attack and reproduction during an infestation of stands contairiing Virginia pine and lol~lolly pine. Nearly all Virginia pine...

Restoration planting options for limber pines in Colorado and Wyoming

Treesearch

Anne Marie Casper; William R. Jacobi; Anna W. Schoettle; Kelly S. Burns

2011-01-01

Limber Pine (Pinus flexilis) populations in the southern Rocky Mountains are severely threatened by the combined impacts of mountain pine beetles and white pine blister rust. Limber pineʼs critical role in these high elevation ecosystems heightens the importance of mitigating these impacts. To develop forest-scale planting methods, six limber pine seedling...

Influence of pine straw harvesting, prescribed fire, and fertilization on a Louisiana longleaf pine site

Treesearch

James D. Haywood

2009-01-01

This research was initiated in a 34-year-old, direct-seeded stand of longleaf pine (Pinus palustris Mill.) to study how pine straw management practices (harvesting, fire, and fertilization) affected the longleaf pine overstory and pine straw yields. A randomized complete block split-plot design was installed with two main plot treatments...

Limber pine forests on the leading edge of white pine blister rust distribution in Northern Colorado

Treesearch

Jennifer G. Klutsch; Betsy A. Goodrich; Anna W. Schoettle

2011-01-01

The combined threats of the current mountain pine beetle (Dendroctonus ponderosae, MPB) epidemic with the imminent invasion of white pine blister rust (caused by the non-native fungus Cronartium ribicola, WPBR) in limber pine (Pinus flexilis) forests in northern Colorado threatens the limber pine's regeneration cycle and ecosystem function. Over one million...

Natural hybridization within seed sources of shortleaf pine (Pinus echinata Mill.) and loblolly pine (Pinus taeda L.)

Treesearch

Shiqin Xu; C.G. Tauer; C. Dana Nelson

2008-01-01

Shortleaf and loblolly pine trees (n=93 and 102, respectively) from 22 seed sources of the Southwide Southern Pine Seed Source Study plantings or equivalent origin were evaluated for amplified fragment length polymorphism (AFLP) variation. These sampled trees represent shortleaf pine and loblolly pine, as they existed across their native geographic ranges before...

Assessing longleaf pine (Pinus palustris) restoration after southern pine beetle kill using a compact experimental design

Treesearch

J.-P. Berrill; C.M. Dagley

2010-01-01

A compact experimental design and analysis is presented of longleaf pine (Pinus palustris) survival and growth in a restoration project in the Piedmont region of Georgia, USA. Longleaf pine seedlings were planted after salvage logging and broadcast burning in areas of catastrophic southern pine beetle (Dendroctonus frontalis) attacks on even-aged mixed pine-hardwood...

Scar markers in a longleaf pine x slash pine F1 family

Treesearch

C. Weng; Thomas L. Kubisiak; M. Stine

1998-01-01

Sequence characterized amplified region (SCAR) markers were derived from random amplified polymorphic DNAs (RAPDs) that segregate in a longleaf pine x slash pine F1 family. Nine RAPD fragments, five from longleaf pine and four from slash pine, were cloned and end sequenced. A total of 13 SCAR primer pairs, with lengths between 17 and 24...

Species hybridization in the genus Pinus

Treesearch

Peter W. Garrett

1979-01-01

Results of a breeding program in which a large number of pine species were tested indicate that a number of species and hybrids may be useful in the northeastern United States. Austrian black pine x Japanese black pine and hybrids containing Japanese red pine all had good growth rates. While none of the soft pines grew faster than eastern white pine, a number of...

Putting white pine in its place on the Hiawatha National Forest

Treesearch

Allen D. Saberniak

1995-01-01

White pine was once a very important part of the ecosysystem in the northern lake states. Turn of the century logging and wildfires removed white pine from many of the ecosystems of which it was an integral part. Early reforestation efforts were largely unsuccessful. The native white pine weevil and the exotic white pine blister rust made white pine establishment...

Nantucket Pine Tip Moth Control and Loblolly Pine Growth in Intensive Pine Culture: Two-Year Results

Treesearch

David L. Kulhavy; Jimmie L. Yeiser; L. Allen Smith

2004-01-01

Twenty-two treatments replicated four times were applied to planted loblolly pine, Pinus taeda L. on bedded industrial forest land in east Texas for measurement of growth impact of Nantucket pine tip moth (NPTM), Rhyacionia frustrana (Comstock), and effects on pine growth over 2 years. Treatments were combinations of Velpar, Oust, and Arsenal...

Field Tests of Pine Oil as a Repellent for Southern Pine Bark Beetles

Treesearch

J.C. Nod; F.L. Hastings; A.S. Jones

1990-01-01

An experimental mixture of terpene hydrocarbons derived from wood pulping, BBR-2, sprayed on the lower 6 m of widely separated southern pine trees did not protect nearby trees from southern pine beetle attacks. Whether treated trees were protected from southern pine beetle was inconclusive. The pine oil mixture did not repellpsfrom treated trees or nearby untreated...

Four Pine Species Grown at Four Spacings on the Eastern Highland Rim, Tennessee, After 30 Years

Treesearch

Martin R. Schubert; John C. Rennie; Scott E. Schlarbaum

2004-01-01

In 1966, four pine species [loblolly pine (Pinus taeda L.), Virginia pine (P. virginiana Mill.), shortleaf pine (P. echinata Mill.) and eastern white pine (P. strobus L.)] were planted at four spacings (6 x 6 foot 9 x 9 foot 12 x 12 feet and 15 x 15 feet) on the eastern Highland Rim near...

The evolution of the New Jersey Pine Plains.

PubMed

Ledig, F Thomas; Hom, John L; Smouse, Peter E

2013-04-01

Fire in the New Jersey Pine Plains has selectively maintained a dwarf growth form of pitch pine (Pinus rigida), which is distinct from the surrounding tall forest of the Pine Barrens and has several other inherited adaptations that enable it to survive in an environment dominated by fire. Pitch pine progeny from two Pine Plains sites, the West and East Pine Plains, were grown in common garden environments with progeny from two Pine Barrens stands, Batsto and Great Egg Harbor River. The tests were replicated in five locations: in New Jersey, Connecticut, two sites in Massachusetts, and Korea. One of the tests was monitored for up to 36 yr. Progeny of Pine Plains origin were, in general, shorter, more crooked, precocious, bore more cones, had a higher frequency of serotinous cones, and had a higher frequency of stem cones than did Pine Barrens progeny, wherever they were grown. The Pine Plains is an ecotype that has evolved in response to disturbance. The several characters that distinguish it from the surrounding tall forest of the Pine Barrens are inherited. The dwarf stature and crooked form not only enable the ecotype to persist in an environment of frequent fires but also increase its flammability.

Comparison of lodgepole and jack pine resin chemistry: implications for range expansion by the mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae).

PubMed

Clark, Erin L; Pitt, Caitlin; Carroll, Allan L; Lindgren, B Staffan; Huber, Dezene P W

2014-01-01

The mountain pine beetle, Dendroctonus ponderosae, is a significant pest of lodgepole pine in British Columbia (BC), where it has recently reached an unprecedented outbreak level. Although it is native to western North America, the beetle can now be viewed as a native invasive because for the first time in recorded history it has begun to reproduce in native jack pine stands within the North American boreal forest. The ability of jack pine trees to defend themselves against mass attack and their suitability for brood success will play a major role in the success of this insect in a putatively new geographic range and host. Lodgepole and jack pine were sampled along a transect extending from the beetle's historic range (central BC) to the newly invaded area east of the Rocky Mountains in north-central Alberta (AB) in Canada for constitutive phloem resin terpene levels. In addition, two populations of lodgepole pine (BC) and one population of jack pine (AB) were sampled for levels of induced phloem terpenes. Phloem resin terpenes were identified and quantified using gas chromatography. Significant differences were found in constitutive levels of terpenes between the two species of pine. Constitutive α-pinene levels - a precursor in the biosynthesis of components of the aggregation and antiaggregation pheromones of mountain pine beetle - were significantly higher in jack pine. However, lower constitutive levels of compounds known to be toxic to bark beetles, e.g., 3-carene, in jack pine suggests that this species could be poorly defended. Differences in wounding-induced responses for phloem accumulation of five major terpenes were found between the two populations of lodgepole pine and between lodgepole and jack pine. The mountain pine beetle will face a different constitutive and induced phloem resin terpene environment when locating and colonizing jack pine in its new geographic range, and this may play a significant role in the ability of the insect to persist in this new host.

Cardiotoxicity of the new cancer therapeutics- mechanisms of, and approaches to, the problem

PubMed Central

Force, Thomas; Kerkelä, Risto

2009-01-01

Cardiotoxicity of some targeted therapeutics, including monoclonal antibodies and small molecule inhibitors, is a reality. Herein we will examine why it occurs, focusing on molecular mechanisms to better understand the issue. We will also examine how big the problem is and, more importantly, how big it may become in the future. We will review models for detecting cardiotoxicity in the pre-clinical phase. We will also focus on two key areas that drive cardiotoxicity- multi-targeting and the inherent lack of selectivity of ATP-competitive antagonists. Finally, we will examine the issue of reversibility and discuss possible approaches to keeping patients on therapy. PMID:18617014

Evaluation research of small and medium-sized enterprise informatization on big data

NASA Astrophysics Data System (ADS)

Yang, Na

2017-09-01

Under the background of big data, key construction of small and medium-sized enterprise informationization level was needed, but information construction cost was large, while information cost of inputs can bring benefit to small and medium-sized enterprises. This paper established small and medium-sized enterprise informatization evaluation system from hardware and software security level, information organization level, information technology application and the profit level, and information ability level. The rough set theory was used to brief indexes, and then carry out evaluation by support vector machine (SVM) model. At last, examples were used to verify the theory in order to prove the effectiveness of the method.

Effect of experience with pine (Pituophis melanoleucus) and king (Lampropeltis getulus) snake odors on Y-maze behavior of pine snake hatchlings.

PubMed

Burger, J; Boarman, W; Kurzava, L; Gochfeld, M

1991-01-01

The abilities of hatchling pine snakes (Pituophis melanoleucus) and king snakes (Lampropeltis getulus) to discriminate the chemical trails of pine and king snakes was investigated inY-maze experiments. Pine snakes were housed for 17 days either with shavings impregnated with pine snake odor, king snake odor, or no odor to test for the effect of experience on choice. Both pine and king snake hatchlings entered the arm with the pine snake odor and did not enter the arm with the king snake odor. The data support the hypothesis that hatchlings of both species can distinguish conspecific odors from other odors and that our manipulation of previous experience was without effect for pine snake hatchlings.

Effects of chronic N additions on tissue chemistry, photosynthetic capacity, and carbon sequestration potential of a red pine (Pinus resinosa Ait.) stand in the NE United States

Treesearch

G.A. Bauer; F.A. Bazzaz; R. Minocha; S. Long; A. Magill; J. Aber; G.M. Berntson

2004-01-01

Temperate forests are predicted to play a key role as important sinks for atmospheric carbon dioxide, which could be enhanced by nitrogen (N) deposition. However, experimental evidence suggests that the impact of N deposition on temperate forest productivity may not be as great as originally assumed. We investigated how chronic N addition affects needle morphology,...

Strength in Numbers: Using Big Data to Simplify Sentiment Classification.

PubMed

Filippas, Apostolos; Lappas, Theodoros

2017-09-01

Sentiment classification, the task of assigning a positive or negative label to a text segment, is a key component of mainstream applications such as reputation monitoring, sentiment summarization, and item recommendation. Even though the performance of sentiment classification methods has steadily improved over time, their ever-increasing complexity renders them comprehensible by only a shrinking minority of expert practitioners. For all others, such highly complex methods are black-box predictors that are hard to tune and even harder to justify to decision makers. Motivated by these shortcomings, we introduce BigCounter: a new algorithm for sentiment classification that substitutes algorithmic complexity with Big Data. Our algorithm combines standard data structures with statistical testing to deliver accurate and interpretable predictions. It is also parameter free and suitable for use virtually "out of the box," which makes it appealing for organizations wanting to leverage their troves of unstructured data without incurring the significant expense of creating in-house teams of data scientists. Finally, BigCounter's efficient and parallelizable design makes it applicable to very large data sets. We apply our method on such data sets toward a study on the limits of Big Data for sentiment classification. Our study finds that, after a certain point, predictive performance tends to converge and additional data have little benefit. Our algorithmic design and findings provide the foundations for future research on the data-over-computation paradigm for classification problems.

Psychometric properties of the multidimensional perfectionism scale of Hewitt in a dutch-speaking sample: associations with the big five personality traits.

PubMed

De Cuyper, Kathleen; Claes, Laurence; Hermans, Dirk; Pieters, Guido; Smits, Dirk

2015-01-01

We administered the Dutch Multidimensional Perfectionism Scale of Hewitt and Flett (1991, 2004) in a large student sample (N = 959) and performed a confirmatory factor analysis to test the factorial structure proposed by the original authors. The existence of a method factor referring to the negatively keyed items in the questionnaire was investigated by including it in the tested models. Next, we investigated how the 3 perfectionism dimensions are associated with the Five-factor model (FFM) of personality. The 3-factor structure originally observed by the authors was confirmed, at least when a method factor that refers to the negatively keyed items was included in the model. Self-oriented and socially prescribed perfectionism were both distinguished by low extraversion and low emotional stability. Self-oriented perfectionism's positive relationship with both conscientiousness and openness to experience differentiated the 2 perfectionism dimensions from each other. Other-oriented perfectionism was not well-characterized by the Big Five personality traits.

Hybridization Leads to Loss of Genetic Integrity in Shortleaf Pine: Unexpected Consequences of Pine Management and Fire Suppression

Treesearch

Charles G. Tauer; John F. Stewart; Rodney E. Will; Curtis J. Lilly; James M. Guldin; C. Dana Nelson

2012-01-01

Hybridization between shortleaf pine and loblolly pine is causing loss of genetic integrity (the tendency of a population to maintain its genotypes over generations) in shortleaf pine, a species already exhibiting dramatic declines due to land-use changes. Recent findings indicate hybridization has increased in shortleaf pine stands from 3% during the 1950s to 45% for...

White pine blister rust resistance in Pinus monticola and P. albicaulis in the Pacific Northwest U.S. – A tale of two species

Treesearch

Richard A. Sniezko; Angelia Kegley; Robert Danchok

2012-01-01

Western white pine (Pinus monticola Dougl. ex D. Don) and whitebark pine (P. albicaulis Engelm.) are white pine species with similar latitudinal and longitudinal geographic ranges in Oregon and Washington (figs. 1 and 2). Throughout these areas, whitebark pine generally occurs at higher elevations than western white pine. Both...

Deer prefer pine seedlings growing near black locust

Treesearch

Walter H. Davidson

1970-01-01

The presence of volunteer black locust seems to make some pine species on a bituminous coal spoil more palatable to white-tailed deer. Seedlings of jack pine, pitch pine, and Austrian pine were browsed more heavily when within 10 feet of a black locust than when farther away. The nitrogen produced by the black locust may have caused more succulent tissue in the pines....

Non-Ribes alternate hosts of white pine blister rust: What this discovery means to whitebark pine

Treesearch

Paul J. Zambino; Bryce A. Richardson; Geral I. McDonald; Ned B. Klopfenstein; Mee-Sook Kim

2006-01-01

From early to present-day outbreaks, white pine blister rust caused by the fungus Cronartium ribicola, in combination with mountain pine beetle outbreaks and fire exclusion has caused ecosystem-wide effects for all five-needled pines (McDonald and Hoff 2001). To be successful, efforts to restore whitebark pine will require sound management decisions that incorporate an...

Growth of eastern white pine (Pinus strobus L.) related to forest floor consumption by prescribed fire in the Southern Appalachians

Treesearch

Katherine J. Elliott; James M. Vose; Barton D. Clinton

2002-01-01

Chainsaw felling, burning, and planting of eastern white pine (Pinus strobus L.) have been prescribed on degraded pine/hardwood stands in the Southern Appalachians to improve overstory composition and productivity. The desired future condition of the overstory is a productive pine/hardwood mixture, with white pine, which is resistant to southern pine...

Final Environmental Assessment, Construct Guard House at Cape Cod Air Force Station, Massachusetts

DTIC Science & Technology

2004-01-01

Pine - Scrub Oak Forest Northern Pine Barren with Oak Forest... barren vegetation communities were identified on Cape Cod AFS, pitch pine – scrub oak barren and northern pine barren with oak trees. The majority of...area on the east side of the access road just north of the installation is northern pine barren with oak trees. Pitch pine and scarlet oak

Preliminary overview of the first extensive rust resistance screening tests of Pinus flexilis and Pinus aristata

Treesearch

Anna W. Schoettle; Richard A. Sniezko; Angelia Kegley; Kelly S. Burns

2011-01-01

Limber pine ( Pinus flexilis James) and Rocky Mountain bristlecone pine (P. aristata Engelm.; hereafter referred to as bristlecone pine) are the dominant pines that occupy high elevation habitats of the southern Rockies. Bristlecone pine is primarily a subalpine and tree-line species while limber pine in the southern Rocky Mountains grows from 1600 m in the short grass...

A comparison of loblolly pine growth and yield on pure pine and mixed pine-hardwood sites

Treesearch

James D. Haywood; John R. Toliver

1989-01-01

The case histories of four loblolly pine (Pinus taeda L.) sites were examined to determine if differences in growth and yield could be associated with stand type. The stand types were pure loblolly pine and mixed loblolly pine-hardwood. All sites were located on silt loam soils and mechanical site preparation was carried out on all sites before...

Effectiveness of Esfenvalerate, Cyfluthrin, and Carbaryl in Protecting Individual Lodgepole Pines and Ponderosa Pines from Attack by Dendroctonus spp.

Treesearch

Michael I. Haverty; Patrick J. Shea; James T. Hoffman; John M. Wenz; Kenneth E. Gibson

1998-01-01

The effectiveness of registered and experimental application rates of insecticides esfenvalerate (Asana XL), cyfluthrin (Tempo WP and Tempo 2), and carbaryl (Sevimol and Sevin SL) was assessed for protection of individual high-value lodgepole pines from mountain pine beetles in Montana and ponderosa pines from western pine beetles in Idaho and California. This field...

Red Pine in the Northern Lake States

Treesearch

Thomas L. Schmidt

2003-01-01

Red pine is an important tree species for the Northern Lake States. About 4 percent of the total area of timberland is dominated by red pine but most other forest types also have red pine as a component. The red pine forest type in the region has dramatically increased in area since the 1930s. Stand-size class distribution of the red pine forest type has changed over...

Regeneration of Rocky Mountain bristlecone pine (Pinus aristata) and limber pine (Pinus flexilis) three decades after stand-replacing fires

Treesearch

Jonathan D. Coop; Anna W. Schoettle

2009-01-01

Rocky Mountain bristlecone pine (Pinus aristata) and limber pine (Pinus flexilis) are important highelevation pines of the southern Rockies that are forecast to decline due to the recent spread of white pine blister rust (Cronartium ribicola) into this region. Proactive management strategies to promote the evolution of rust resistance and maintain ecosystem function...

Strategies for managing whitebark pine in the presence of white pine blister rust [Chapter 17

Treesearch

Raymond J. Hoff; Dennis E. Ferguson; Geral I. McDonald; Robert E. Keane

2001-01-01

Whitebark pine (Pinus albicaulis) is one of many North American white pine species (Pinus subgenus Strobus) susceptible to the fungal disease white pine blister rust (Cronartium ribicola). Blister rust has caused severe mortality (often reaching nearly 100 percent) in many stands of white bark pine north of 45° latitude in western North America. The rust is slowly...

Ecophysiological comparison of 50-year-old longleaf pine, slash pine and loblolly pine.

Treesearch

Lisa Samuelson; Tom Stokes; Kurt Johnsen

2012-01-01

Longleaf pine (Pinus palustris Mill.), a species that once dominated the southeastern USA, is considered to be more drought tolerant than the principle plantation species in the South, loblolly pine (Pinus taeda L.) and slash pine (Pinus elliottii Engelm.), and so is predicted to better cope with increases in drought frequency associated with climate change. To...

Annual Research Review: Discovery science strategies in studies of the pathophysiology of child and adolescent psychiatric disorders--promises and limitations.

PubMed

Zhao, Yihong; Castellanos, F Xavier

2016-03-01

Psychiatric science remains descriptive, with a categorical nosology intended to enhance interobserver reliability. Increased awareness of the mismatch between categorical classifications and the complexity of biological systems drives the search for novel frameworks including discovery science in Big Data. In this review, we provide an overview of incipient approaches, primarily focused on classically categorical diagnoses such as schizophrenia (SZ), autism spectrum disorder (ASD), and attention-deficit/hyperactivity disorder (ADHD), but also reference convincing, if focal, advances in cancer biology, to describe the challenges of Big Data and discovery science, and outline approaches being formulated to overcome existing obstacles. A paradigm shift from categorical diagnoses to a domain/structure-based nosology and from linear causal chains to complex causal network models of brain-behavior relationship is ongoing. This (r)evolution involves appreciating the complexity, dimensionality, and heterogeneity of neuropsychiatric data collected from multiple sources ('broad' data) along with data obtained at multiple levels of analysis, ranging from genes to molecules, cells, circuits, and behaviors ('deep' data). Both of these types of Big Data landscapes require the use and development of robust and powerful informatics and statistical approaches. Thus, we describe Big Data analysis pipelines and the promise and potential limitations in using Big Data approaches to study psychiatric disorders. We highlight key resources available for psychopathological studies and call for the application and development of Big Data approaches to dissect the causes and mechanisms of neuropsychiatric disorders and identify corresponding biomarkers for early diagnosis. © 2016 Association for Child and Adolescent Mental Health.

Annual Research Review: Discovery science strategies in studies of the pathophysiology of child and adolescent psychiatric disorders: promises and limitations

PubMed Central

Zhao, Yihong; Castellanos, F. Xavier

2015-01-01

Background and Scope Psychiatric science remains descriptive, with a categorical nosology intended to enhance inter-observer reliability. Increased awareness of the mismatch between categorical classifications and the complexity of biological systems drives the search for novel frameworks including discovery science in Big Data. In this review, we provide an overview of incipient approaches, primarily focused on classically categorical diagnoses such as schizophrenia (SZ), autism spectrum disorder (ASD) and attention-deficit/hyperactivity disorder (ADHD), but also reference convincing, if focal, advances in cancer biology, to describe the challenges of Big Data and discovery science, and outline approaches being formulated to overcome existing obstacles. Findings A paradigm shift from categorical diagnoses to a domain/structure-based nosology and from linear causal chains to complex causal network models of brain-behavior relationship is ongoing. This (r)evolution involves appreciating the complexity, dimensionality and heterogeneity of neuropsychiatric data collected from multiple sources (“broad” data) along with data obtained at multiple levels of analysis, ranging from genes to molecules, cells, circuits and behaviors (“deep” data). Both of these types of Big Data landscapes require the use and development of robust and powerful informatics and statistical approaches. Thus, we describe Big Data analysis pipelines and the promise and potential limitations in using Big Data approaches to study psychiatric disorders. Conclusion We highlight key resources available for psychopathological studies and call for the application and development of Big Data approaches to dissect the causes and mechanisms of neuropsychiatric disorders and identify corresponding biomarkers for early diagnosis. PMID:26732133

Big Data and medicine: a big deal?

PubMed

Mayer-Schönberger, V; Ingelsson, E

2018-05-01

Big Data promises huge benefits for medical research. Looking beyond superficial increases in the amount of data collected, we identify three key areas where Big Data differs from conventional analyses of data samples: (i) data are captured more comprehensively relative to the phenomenon under study; this reduces some bias but surfaces important trade-offs, such as between data quantity and data quality; (ii) data are often analysed using machine learning tools, such as neural networks rather than conventional statistical methods resulting in systems that over time capture insights implicit in data, but remain black boxes, rarely revealing causal connections; and (iii) the purpose of the analyses of data is no longer simply answering existing questions, but hinting at novel ones and generating promising new hypotheses. As a consequence, when performed right, Big Data analyses can accelerate research. Because Big Data approaches differ so fundamentally from small data ones, research structures, processes and mindsets need to adjust. The latent value of data is being reaped through repeated reuse of data, which runs counter to existing practices not only regarding data privacy, but data management more generally. Consequently, we suggest a number of adjustments such as boards reviewing responsible data use, and incentives to facilitate comprehensive data sharing. As data's role changes to a resource of insight, we also need to acknowledge the importance of collecting and making data available as a crucial part of our research endeavours, and reassess our formal processes from career advancement to treatment approval. © 2017 The Association for the Publication of the Journal of Internal Medicine.

Tall oil precursors in three western pines: ponderosa, lodgepole, and limber pine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conner, A.H.; Diehl, M.A.; Rowe, J.W.

1980-01-01

The nonvolatile diethyl ether extracts (NVEE) from ponderosa, lodgepole, and limber pines were analyzed to determine the amounts and chemical composition of the tall oil precursors (resin acids, fatty acids, and nonsaponifiables) and turpentine precursors available from these species. The results showed that crude tall oil compositions would be approximately as follows (% resin acids, % fatty acids, % nonsaponifiables); ponderosa pine - sapwood (15, 75, 10), heartwood (78, 7, 15); lodgepole pine - sapwood (24, 57, 19), heartwood (51, 26, 23); limber pine - sapwood (10, 82, 8), heartwood (23, 60, 17). The larger nonsaponifiables content, as compared tomore » southern pines, is the major factor in explaining the greater difficulty in the distillative refining of tall oil from these western species. Eight resin acids were found in ponderosa and lodgepole pine: palustric, isopimaric, abietic, dehydroabietic, and neoabietic acids predominated. Seven resin acids were identified from limber pine: anticopalic, isopimaric, abietic, and dehydroabietic acids predominated. The free and esterfied fatty acids from these species contained predominantly oleic and linoleic acids. In addition limber pine contained major amounts of 5, 9, 12-octadecatrienoic acid. The nonsaponifiables contained mostly diterpenes and the sterols, sitosterol and campesterol. The major turpentine components were: ponderosa pine - ..beta..-pinene and 3-carene; lodgepole pine - ..beta..-phellandrene; and limber pine - 3-carene, ..beta..-phellandrene, ..cap alpha..-piene, and ..beta..-pinene.« less

Physician Acceptance of Gateway to Care at Irwin Army Community Hospital

DTIC Science & Technology

1992-07-27

frontier cavalry post once commanded by General George Armstrong Custer. Today it is the home of almost 20,000 soldiers of the Big Red One, First Infantry...especially important for the future. Physicians, as key "players" in healthcare organizations, are also key to the success of Gateway to Care. Kotler and...research (3rd ed.). New York: Holt. Physician Acceptance 32 Kotler , P., & Clarke, R. (1987). Marketing for health care organizations. Englewood Cliffs

Distribution and movement of Big Spring spinedace (Lepidomeda mollispinis pratensis) in Condor Canyon, Meadow Valley Wash, Nevada

USGS Publications Warehouse

Jezorek, Ian G.; Connolly, Patrick J.

2013-01-01

Big Spring spinedace (Lepidomeda mollispinis pratensis) is a cyprinid whose entire population occurs within a section of Meadow Valley Wash, Nevada. Other spinedace species have suffered population and range declines (one species is extinct). Managers, concerned about the vulnerability of Big Spring spinedace, have considered habitat restoration actions or translocation, but they have lacked data on distribution or habitat use. Our study occurred in an 8.2-km section of Meadow Valley Wash, including about 7.2 km in Condor Canyon and 0.8 km upstream of the canyon. Big Spring spinedace were present upstream of the currently listed critical habitat, including in the tributary Kill Wash. We found no Big Spring spinedace in the lower 3.3 km of Condor Canyon. We tagged Big Spring spinedace ≥70 mm fork length (range 70–103 mm) with passive integrated transponder tags during October 2008 (n = 100) and March 2009 (n = 103) to document movement. At least 47 of these individuals moved from their release location (up to 2 km). Thirty-nine individuals moved to Kill Wash or the confluence area with Meadow Valley Wash. Ninety-three percent of movement occurred in spring 2009. Fish moved both upstream and downstream. We found no movement downstream over a small waterfall at river km 7.9 and recorded only one fish that moved downstream over Delmue Falls (a 12-m drop) at river km 6.1. At the time of tagging, there was no significant difference in fork length or condition between Big Spring Spinedace that were later detected moving and those not detected moving. We found no significant difference in fork length or condition at time of tagging of Big Spring spinedace ≥70 mm fork length that were detected moving and those not detected moving. Kill Wash and its confluence area appeared important to Big Spring spinedace; connectivity with these areas may be key to species persistence. These areas may provide a habitat template for restoration or translocation. The lower 3.3 km of Meadow Valley Wash in Condor Canyon may be a good candidate section for habitat restoration actions.

Climate Analytics-As-a-Service (CAaas), Advanced Information Systems, and Services to Accelerate the Climate Sciences.

NASA Astrophysics Data System (ADS)

McInerney, M.; Schnase, J. L.; Duffy, D.; Tamkin, G.; Nadeau, D.; Strong, S.; Thompson, J. H.; Sinno, S.; Lazar, D.

2014-12-01

The climate sciences represent a big data domain that is experiencing unprecedented growth. In our efforts to address the big data challenges of climate science, we are moving toward a notion of Climate Analytics-as-a-Service (CAaaS). We focus on analytics, because it is the knowledge gained from our interactions with big data that ultimately product societal benefits. We focus on CAaaS because we believe it provides a useful way of thinking about the problem: a specialization of the concept of business process-as-a-service, which is an evolving extension of IaaS, PaaS, and SaaS enabled by cloud computing. Within this framework, cloud computing plays an important role; however, we see it as only one element in a constellation of capabilities that are essential to delivering climate analytics-as-a-service. These elements are essential because in the aggregate they lead to generativity, a capacity for self-assembly that we feel is the key to solving many of the big data challenges in this domain. This poster will highlight specific examples of CAaaS using climate reanalysis data, high-performance cloud computing, map reduce, and the Climate Data Services API.

Topologically Consistent Models for Efficient Big Geo-Spatio Data Distribution

NASA Astrophysics Data System (ADS)

Jahn, M. W.; Bradley, P. E.; Doori, M. Al; Breunig, M.

2017-10-01

Geo-spatio-temporal topology models are likely to become a key concept to check the consistency of 3D (spatial space) and 4D (spatial + temporal space) models for emerging GIS applications such as subsurface reservoir modelling or the simulation of energy and water supply of mega or smart cities. Furthermore, the data management for complex models consisting of big geo-spatial data is a challenge for GIS and geo-database research. General challenges, concepts, and techniques of big geo-spatial data management are presented. In this paper we introduce a sound mathematical approach for a topologically consistent geo-spatio-temporal model based on the concept of the incidence graph. We redesign DB4GeO, our service-based geo-spatio-temporal database architecture, on the way to the parallel management of massive geo-spatial data. Approaches for a new geo-spatio-temporal and object model of DB4GeO meeting the requirements of big geo-spatial data are discussed in detail. Finally, a conclusion and outlook on our future research are given on the way to support the processing of geo-analytics and -simulations in a parallel and distributed system environment.

Naturally Occurring Compound Can Protect Pines from the Southern Pine Beetle

Treesearch

B.L. Strom; R.A. Goyer; J.L. Hayes

1995-01-01

The southern pine beetle (SPB), Dendroctonus frontalis, is the most destructive insect pest of southern pine forests. This tiny insect, smaller than a grain of rice, is responsible for killing pine timber worth millions of dollars on a periodic basis in Louisiana.

Restoration planting options for limber pines in the southern Rocky Mountains

Treesearch

Anne Marie Casper; William R. Jacobi; Anna W. Schoettle; Kelly S. Burns

2011-01-01

Limber Pine (Pinus flexilis) populations in the southern Rocky Mountains are severely threatened by the combined impacts of mountain pine beetles and white pine blister rust. Limber pine's critical role in these high elevation ecosystems heightens the importance of mitigating these impacts.

Southern Pine Beetle Handbook: Southern Pine Beetles Can Kill Your Ornamental Pine

Treesearch

Robert C. Thatcher; Jack E. Coster; Thomas L. Payne

1974-01-01

Southern pine beetles are compulsive eaters. Each year in the South from Texas to Virginia the voracious insects conduct a movable feast across thousands of acres of pine forests. Most trees die soon after the beetles sink their teeth into them.

Characterization of pine nuts in the U.S. market, including those associated with "pine mouth", by GC-FID.

PubMed

Fardin-Kia, Ali Reza; Handy, Sara M; Rader, Jeanne I

2012-03-14

Taste disturbances following consumption of pine nuts, referred to as "pine mouth", have been reported by consumers in the United States and Europe. Nuts of Pinus armandii have been associated with pine mouth, and a diagnostic index (DI) measuring the content of Δ5-unsaturated fatty acids relative to that of their fatty acid precursors has been proposed for identifying nuts from this species. A 100 m SLB-IL 111 GC column was used to improve fatty acid separations, and 45 pine nut samples were analyzed, including pine mouth-associated samples. This study examined the use of a DI for the identification of mixtures of pine nut species and showed the limitation of morphological characteristics for species identification. DI values for many commercial samples did not match those of known reference species, indicating that the majority of pine nuts collected in the U.S. market, including those associated with pine mouth, are mixtures of nuts from different Pinus species.

Histological observations on needle colonization by Cronartium ribicola in susceptible and resistant seedlings of whitebark pine and limber pine

Treesearch

Jeffrey Stone; Anna Schoettle; Richard Sniezko; Angelia Kegley

2011-01-01

Resistance to white pine blister rust based on a hypersensitive response (HR) that is conferred by a dominant gene has been identified as functioning in needles of blister rust-resistant families of sugar pine, western white pine and southwestern white pine. The typical HR response displays a characteristic local necrosis at the site of infection in the needles during...

HOW to Manage Eastern White Pine to Minimize Damage from Blister Rust and White Pine Weevil

Treesearch

Steven Katovich; Manfred E. Mielke

1993-01-01

White pine was once a dominant forest species in the north central and northeastern United States. Following logging in the late 1800's and the early part of this century, two major pests, white pine blister rust, Cronartium ribicola J.C.Fisch., and white pine weevil, Pissodes strobi (Peck), combined to reduce the value of white pine. Blister rust was introduced...

Effects of aerially applied glyphosate and hexazinone on hardwoods and pines in a loblolly pine plantation

Treesearch

James D. Haywood

1993-01-01

Three herbicide products, Roundup© (glyphosate), Pronone© 10G (hexazinone), and Velpar© L (hexazinone), were applied aerially to release a 4-year-old loblolly pine plantation from hardwood competition. Herbicide damage to pines was not excessive. Post-treatment growth of pines in herbicide-treated plots was not significantly different from growth of pines in untreated...

Influence of seedbed, light environment, and elevated night temperature on growth and carbon allocation in pitch pine (Pinus rigida) and jack pine (Pinus banksiana) seedlings

Treesearch

Michael E. Day; Jessica L. Schedlbauer; William H. Livingston; Michael S. Greenwood; Alan S. White; John C. Brissette

2005-01-01

Jack pine (Pinus banksiana Lamb.) and pitch pine (Pinus rigida Mill.) are two autecologically similar species that occupy generally disjunct ranges in eastern North America. Jack pine is boreal in distribution, while pitch pine occurs at temperate latitudes. The two species co-occur in a small number of stands along a 'tension...

Fire and stand history in two limber pine (Pinus flexilis) and Rocky Mountain bristlecone pine (Pinus aristata) stands in Colorado

Treesearch

Peter M. Brown; Anna W. Schoettle

2008-01-01

We developed fire-scar and tree-recruitment chronologies from two stands dominated by limber pine and Rocky Mountain bristlecone pine in central and northern Colorado. Population structures in both sites exhibit reverse-J patterns common in uneven-aged forests. Bristlecone pine trees were older than any other at the site or in the limber pine stand, with the oldest...

Developing proactive management options to sustain bristlecone and limber pine ecosystems in the presence of a non-native pathogen

Treesearch

A. W. Schoettle

2004-01-01

Limber pine and Rocky Mountain bristlecone pine are currently threatened by the non-native pathogen white pine blister rust (WPBR). Limber pine is experiencing mortality in the Northern Rocky Mountains and the infection front continues to move southward. The first report of WPBR on Rocky Mountain bristlecone pine was made in 2003 (Blodgett and Sullivan 2004), at a site...

A review of the literature on seed fate in whitebark pine and the life history traits of Clark’s nutcracker and pine squirrels.

Treesearch

Teresa J. Lorenz; Carol Aubry; Robin. Shoal

2008-01-01

Whitebark pine is a critical component of subalpine ecosystems in western North America, where it contributes to biodiversity and ecosystem function and in some communities is considered a keystone species. Whitebark pine is undergoing rangewide population declines attributed to the combined effects of mountain pine beetle, white pine blister rust, and fire suppression...

Impact of weed control and fertilization on growth of four species of pine in the Virginia Piedmont

Treesearch

Dzhamal Y. Amishev; Thomas R. Fox

2006-01-01

During 1999, a mixed stand of Virginia pine and hardwoods in the Piedmont of Virginia was clearcut and site prepared by burning. Three replications, containing strips of loblolly pine, shortleaf pine, Virginia pine, and Eastern white pine, were planted at a 3 m x 1.5 m spacing during February to June, 2000. The strips were subsequently split to accommodate four...

Scientific designs of pine seeds and pine cones for species conservation

NASA Astrophysics Data System (ADS)

Song, Kahye; Yeom, Eunseop; Kim, Hyejeong; Lee, Sang Joon

2015-11-01

Reproduction and propagation of species are the most important missions of every living organism. For effective species propagation, pine cones fold their scales under wet condition to prevent seeds from short-distance dispersal. They open and release their embedded seeds on dry and windy days. In this study, the micro-/macro-scale structural characteristics of pine cones and pine seeds are studied using various imaging modalities. Since the scales of pine cones consist of dead cells, the folding motion is deeply related to structural changes. The scales of pine cones consist of three layers. Among them, bract scales are only involved in collecting water. This makes pine cones reduce the amount of water and minimize the time spent on structural changes. These systems also involve in drying and recovery of pine cones. In addition, pine cones and pine seeds have advantageous structures for long-distance dispersal and response to natural disaster. Owing to these structural features, pine seeds can be released safely and efficiently, and these types of structural advantages could be mimicked for practical applications. This research was financially supported by the Creative Research Initiative of the Ministry of Science, ICT and Future Planning (MSIP) and the National Research Foundation (NRF) of Korea (Contract grant number: 2008-0061991).

Mountain Pine Beetle Dynamics and Reproductive Success in Post-Fire Lodgepole and Ponderosa Pine Forests in Northeastern Utah

PubMed Central

Lerch, Andrew P.; Pfammatter, Jesse A.

2016-01-01

Fire injury can increase tree susceptibility to some bark beetles (Curculionidae, Scolytinae), but whether wildfires can trigger outbreaks of species such as mountain pine beetle (Dendroctonus ponderosae Hopkins) is not well understood. We monitored 1173 lodgepole (Pinus contorta var. latifolia Doug.) and 599 ponderosa (Pinus ponderosa Doug. ex Law) pines for three years post-wildfire in the Uinta Mountains of northeastern Utah in an area with locally endemic mountain pine beetle. We examined how the degree and type of fire injury influenced beetle attacks, brood production, and subsequent tree mortality, and related these to beetle population changes over time. Mountain pine beetle population levels were high the first two post-fire years in lodgepole pine, and then declined. In ponderosa pine, populations declined each year after initial post-fire sampling. Compared to trees with strip or failed attacks, mass attacks occurred on trees with greater fire injury, in both species. Overall, a higher degree of damage to crowns and boles was associated with higher attack rates in ponderosa pines, but additional injury was more likely to decrease attack rates in lodgepole pines. In lodgepole pine, attacks were initially concentrated on fire-injured trees, but during subsequent years beetles attacked substantial numbers of uninjured trees. In ponderosa pine, attacks were primarily on injured trees each year, although these stands were more heavily burned and had few uninjured trees. In total, 46% of all lodgepole and 56% of ponderosa pines underwent some degree of attack. Adult brood emergence within caged bole sections decreased with increasing bole char in lodgepole pine but increased in ponderosa pine, however these relationships did not scale to whole trees. Mountain pine beetle populations in both tree species four years post-fire were substantially lower than the year after fire, and wildfire did not result in population outbreaks. PMID:27783632

Mountain Pine Beetle Dynamics and Reproductive Success in Post-Fire Lodgepole and Ponderosa Pine Forests in Northeastern Utah.

PubMed

Lerch, Andrew P; Pfammatter, Jesse A; Bentz, Barbara J; Raffa, Kenneth F

2016-01-01

Fire injury can increase tree susceptibility to some bark beetles (Curculionidae, Scolytinae), but whether wildfires can trigger outbreaks of species such as mountain pine beetle (Dendroctonus ponderosae Hopkins) is not well understood. We monitored 1173 lodgepole (Pinus contorta var. latifolia Doug.) and 599 ponderosa (Pinus ponderosa Doug. ex Law) pines for three years post-wildfire in the Uinta Mountains of northeastern Utah in an area with locally endemic mountain pine beetle. We examined how the degree and type of fire injury influenced beetle attacks, brood production, and subsequent tree mortality, and related these to beetle population changes over time. Mountain pine beetle population levels were high the first two post-fire years in lodgepole pine, and then declined. In ponderosa pine, populations declined each year after initial post-fire sampling. Compared to trees with strip or failed attacks, mass attacks occurred on trees with greater fire injury, in both species. Overall, a higher degree of damage to crowns and boles was associated with higher attack rates in ponderosa pines, but additional injury was more likely to decrease attack rates in lodgepole pines. In lodgepole pine, attacks were initially concentrated on fire-injured trees, but during subsequent years beetles attacked substantial numbers of uninjured trees. In ponderosa pine, attacks were primarily on injured trees each year, although these stands were more heavily burned and had few uninjured trees. In total, 46% of all lodgepole and 56% of ponderosa pines underwent some degree of attack. Adult brood emergence within caged bole sections decreased with increasing bole char in lodgepole pine but increased in ponderosa pine, however these relationships did not scale to whole trees. Mountain pine beetle populations in both tree species four years post-fire were substantially lower than the year after fire, and wildfire did not result in population outbreaks.

Structural and climatic determinants of demographic rates of Scots pine forests across the Iberian Peninsula.

PubMed

Vilà-Cabrera, Albert; Martínez-Vilalta, Jordi; Vayreda, Jordi; Retana, Javier

2011-06-01

The demographic rates of tree species typically show large spatial variation across their range. Understanding the environmental factors underlying this variation is a key topic in forest ecology, with far-reaching management implications. Scots pine (Pinus sylvestris L.) covers large areas of the Northern Hemisphere, the Iberian Peninsula being its southwestern distribution limit. In recent decades, an increase in severe droughts and a densification of forests as a result of changes in forest uses have occurred in this region. Our aim was to use climate and stand structure data to explain mortality and growth patterns of Scots pine forests across the Iberian Peninsula. We used data from 2392 plots dominated by Scots pine, sampled for the National Forest Inventory of Spain. Plots were sampled from 1986 to 1996 (IFN2) and were resampled from 1997 to 2007 (IFN3), allowing for the calculation of growth and mortality rates. We fitted linear models to assess the response of growth and mortality rates to the spatial variability of climate, climatic anomalies, and forest structure. Over the period of approximately 10 years between the IFN2 and IFN3, the amount of standing dead trees increased 11-fold. Higher mortality rates were related to dryness, and growth was reduced with increasing dryness and temperature, but results also suggested that effects of climatic stressors were not restricted to dry sites only. Forest structure was strongly related to demographic rates, suggesting that stand development and competition are the main factors associated with demography. In the case of mortality, forest structure interacted with climate, suggesting that competition for water resources induces tree mortality in dry sites. A slight negative relationship was found between mortality and growth, indicating that both rates are likely to be affected by the same stress factors. Additionally, regeneration tended to be lower in plots with higher mortality. Taken together, our results suggest a large-scale self-thinning related to the recent densification of Scots pine forests. This process appears to be enhanced by dry conditions and may lead to a mismatch in forest turnover. Forest management may be an essential adaptive tool under the drier conditions predicted by most climate models.

Modeling the effects of tree species and incubation temperature on soil's extracellular enzyme activity in 78-year-old tree plantations

NASA Astrophysics Data System (ADS)

Zhou, Xiaoqi; Wang, Shen S. J.; Chen, Chengrong

2017-12-01

Forest plantations have been widely used as an effective measure for increasing soil carbon (C), and nitrogen (N) stocks and soil enzyme activities play a key role in soil C and N losses during decomposition of soil organic matter. However, few studies have been carried out to elucidate the mechanisms behind the differences in soil C and N cycling by different tree species in response to climate warming. Here, we measured the responses of soil's extracellular enzyme activity (EEA) to a gradient of temperatures using incubation methods in 78-year-old forest plantations with different tree species. Based on a soil enzyme kinetics model, we established a new statistical model to investigate the effects of temperature and tree species on soil EEA. In addition, we established a tree species-enzyme-C/N model to investigate how temperature and tree species influence soil C/N contents over time without considering plant C inputs. These extracellular enzymes included C acquisition enzymes (β-glucosidase, BG), N acquisition enzymes (N-acetylglucosaminidase, NAG; leucine aminopeptidase, LAP) and phosphorus acquisition enzymes (acid phosphatases). The results showed that incubation temperature and tree species significantly influenced all soil EEA and Eucalyptus had 1.01-2.86 times higher soil EEA than coniferous tree species. Modeling showed that Eucalyptus had larger soil C losses but had 0.99-2.38 times longer soil C residence time than the coniferous tree species over time. The differences in the residual soil C and N contents between Eucalyptus and coniferous tree species, as well as between slash pine (Pinus elliottii Engelm. var. elliottii) and hoop pine (Araucaria cunninghamii Ait.), increase with time. On the other hand, the modeling results help explain why exotic slash pine can grow faster, as it has 1.22-1.38 times longer residual soil N residence time for LAP, which mediate soil N cycling in the long term, than native coniferous tree species like hoop pine and kauri pine (Agathis robusta C. Moore). Our results will be helpful for understanding the mechanisms of soil C and N cycling by different tree species, which will have implications for forest management.

Sugar pine and its hybrids

Treesearch

W. B. Critchfield; B. B. Kinloch

1986-01-01

Unlike most white pines, sugar pine (Pinus lambertiana) is severely restricted in its ability to hybridize with other species. It has not been successfully crossed with any other North American white pine, nor with those Eurasian white pines it most closely resembles. Crosses with the dissimilar P. koraiensis and P....

Mountain pine beetle-caused mortality over eight years in two pine hosts in mixed conifer stands of the southern Rocky Mountains

USGS Publications Warehouse

West, Daniel R.; Briggs, Jennifer S.; Jacobi, William R.; Negrón, José F.

2014-01-01

Eruptive mountain pine beetle (Dendroctonus ponderosae, MPB) populations have caused widespread mortality of pines throughout western North America since the late 1990s. Early work by A.D. Hopkins suggested that when alternate host species are available, MPB will prefer to breed in the host to which it has become adapted. In Colorado, epidemic MPB populations that originated in lodgepole pine expanded into mixed-conifer stands containing ponderosa pine, a related host. We evaluated the susceptibility of both hosts to successful MPB colonization in a survey of 19 sites in pine-dominated mixed-conifer stands spanning 140 km of the Front Range, CO, USA. In each of three 0.2-ha plots at each site, we (1) assessed trees in the annual flights of 2008–2011 to compare MPB-caused mortality between lodgepole and ponderosa pine; (2) recorded previous MPB-caused tree mortality from 2004–2007 to establish baseline mortality levels; and (3) measured characteristics of the stands (e.g. tree basal area) and sites (e.g. elevation, aspect) that might be correlated with MPB colonization. Uninfested average live basal area of lodgepole and ponderosa pine was 74% of total basal area before 2004. We found that for both species, annual percent basal area of attacked trees was greatest in one year (2009), and was lower in all other years (2004–2007, 2008, 2010, and 2011). Both pine species had similar average total mortality of 38–39% by 2011. Significant predictors of ponderosa pine mortality in a given year were basal area of uninfested ponderosa pine and the previous year’s mortality levels in both ponderosa and lodgepole pine. Lodgepole pine mortality was predicted by uninfested basal areas of both lodgepole and ponderosa pine, and the previous year’s lodgepole pine mortality. These results indicate host selection by MPB from lodgepole pine natal hosts into ponderosa pine the following year, but not the reverse. In both species, diameters of attacked trees within each year were similar, and were progressively smaller the last four years of the study period. Our results suggest that, in contrast to previous reports, ponderosa and lodgepole pine were equally susceptible to MPB infestation in the CO Front Range during our study period. This suggests that forest managers may anticipate similar impacts in both hosts during similar environmental conditions when epidemic-level MPB populations are active in mixed-pine stands.

Cellulolytic Streptomyces Strains Associated with Herbivorous Insects Share a Phylogenetically Linked Capacity To Degrade Lignocellulose

PubMed Central

Book, Adam J.; Lewin, Gina R.; McDonald, Bradon R.; Takasuka, Taichi E.; Doering, Drew T.; Adams, Aaron S.; Blodgett, Joshua A. V.; Clardy, Jon; Raffa, Kenneth F.; Fox, Brian G.

2014-01-01

Actinobacteria in the genus Streptomyces are critical players in microbial communities that decompose complex carbohydrates in the soil, and these bacteria have recently been implicated in the deconstruction of plant polysaccharides for some herbivorous insects. Despite the importance of Streptomyces to carbon cycling, the extent of their plant biomass-degrading ability remains largely unknown. In this study, we compared four strains of Streptomyces isolated from insect herbivores that attack pine trees: DpondAA-B6 (SDPB6) from the mountain pine beetle, SPB74 from the southern pine beetle, and SirexAA-E (SACTE) and SirexAA-G from the woodwasp, Sirex noctilio. Biochemical analysis of secreted enzymes demonstrated that only two of these strains, SACTE and SDPB6, were efficient at degrading plant biomass. Genomic analyses indicated that SACTE and SDPB6 are closely related and that they share similar compositions of carbohydrate-active enzymes. Genome-wide proteomic and transcriptomic analyses revealed that the major exocellulases (GH6 and GH48), lytic polysaccharide monooxygenases (AA10), and mannanases (GH5) were conserved and secreted by both organisms, while the secreted endocellulases (GH5 and GH9 versus GH9 and GH12) were from diverged enzyme families. Together, these data identify two phylogenetically related insect-associated Streptomyces strains with high biomass-degrading activity and characterize key enzymatic similarities and differences used by these organisms to deconstruct plant biomass. PMID:24837391

The cellular and molecular biology of conifer embryogenesis.

PubMed

Cairney, John; Pullman, Gerald S

2007-01-01

Gymnosperms and angiosperms are thought to have evolved from a common ancestor c. 300 million yr ago. The manner in which gymnosperms and angiosperms form seeds has diverged and, although broad similarities are evident, the anatomy and cell and molecular biology of embryogenesis in gymnosperms, such as the coniferous trees pine, spruce and fir, differ significantly from those in the most widely studied model angiosperm Arabidopsis thaliana. Molecular analysis of signaling pathways and processes such as programmed cell death and embryo maturation indicates that many developmental pathways are conserved between angiosperms and gymnosperms. Recent genomics research reveals that almost 30% of mRNAs found in developing pine embryos are absent from other conifer expressed sequence tag (EST) collections. These data show that the conifer embryo differs markedly from other gymnosperm tissues studied to date in terms of the range of genes transcribed. Approximately 72% of conifer embryo-expressed genes are found in the Arabidopsis proteome and conifer embryos contain mRNAs of very similar sequence to key genes that regulate seed development in Arabidopsis. However, 1388 loblolly pine (Pinus taeda) embryo ESTs (11.4% of the collection) are novel and, to date, have been found in no other plant. The data imply that, in gymnosperm embryogenesis, differences in structure and development are achieved by subtle molecular interactions, control of spatial and temporal gene expression and the regulating agency of a few unique proteins.

The Effect of Two Amino acid Residue Substitutions via RNA Editing on Dark-operative Protochlorophyllide Oxidoreductase in the Black Pine Chloroplasts.

PubMed

Yamamoto, Haruki; Kusumi, Junko; Yamakawa, Hisanori; Fujita, Yuichi

2017-05-24

Dark-operative protochlorophyllide oxidoreductase (DPOR) is a key enzyme to produce chlorophyll in the dark. Among photosynthetic eukaryotes, all three subunits chlL, chlN, and chlB are encoded by plastid genomes. In some gymnosperms, two codons of chlB mRNA are changed by RNA editing to codons encoding evolutionarily conserved amino acid residues. However, the effect of these substitutions on DPOR activity remains unknown. We first prepared cyanobacterial ChlB variants with amino acid substitution(s) to mimic ChlB translated from pre-edited mRNA. Their activities were evaluated by measuring chlorophyll content of dark-grown transformants of a chlB-lacking mutant of the cyanobacterium Leptolyngbya boryana that was complemented with pre-edited mimic chlB variants. The chlorophyll content of the transformant cells expressing the ChlB variant from the fully pre-edited mRNA was only one-fourth of the control cells. Co-purification experiments of ChlB with Strep-ChlN suggested that a stable complex with ChlN is greatly impaired in the substituted ChlB variant. We then confirmed that RNA editing efficiency was markedly greater in the dark than in the light in cotyledons of the black pine Pinus thunbergii. These results indicate that RNA editing on chlB mRNA is important to maintain appropriate DPOR activity in black pine chloroplasts.

San Andreas drilling sites selected

NASA Astrophysics Data System (ADS)

Ellsworth, Bill; Zoback, Mark

A new initiative for drilling and coring directly into the San Andreas fault at depths up to 10 km is being proposed by an international team of scientists led by Mark Zoback, Stanford University; Steve Hickman and Bill Ellsworth, U.S. Geological Survey; and Lee Younker, Lawrence Livermore Laboratory. In addition to exhuming samples of fault rock and fluids from seismogenic depths, the hole will be used to make a wide range of geophysical measurements within the fault zone and to monitor the fault zone over time. Four areas along the San Andreas have been selected as candidates for deep drilling: the Mojave segment of the San Andreas between Leona Valley and Big Pine, the Carrizo Plain, the San Francisco Peninsula between Los Altos and Daly City, and the Northern Gabilan Range between the Cienga winery and Melendy Ranch. These sites were chosen from an initial list compiled at the International Fault Zone Drilling Workshop held in Asilomar, Calif., in December 1992 and at meetings held this winter and spring in Menlo Park, Calif.

SAGE III-ISS

Atmospheric Science Data Center

2017-12-27

SAGE III-ISS Data and Information Launched on February 19, 2017 on a SpaceX ... vertical profiles of the stratosphere and mesosphere. The data provided by SAGE III-ISS includes key components of atmospheric ... Additional Info:  Data Format: HDF4 or Big Endian/IEEE Binary SCAR-B Block:  ...

The health of loblolly pine stands at Fort Benning, GA

Treesearch

Soung-Ryoul Ryu; G. Geoff Wang; Joan L. Walker

2013-01-01

Approximately two-thirds of the red-cockaded woodpecker (Picoides borealis) (RCW) groups at Fort Benning, GA, depend on loblolly pine (Pinus taeda) stands for nesting or foraging. However, loblolly pine stands are suspected to decline. Forest managers want to replace loblolly pine with longleaf pine (P. palustris...

Silvical characteristics of Jeffrey pine

Treesearch

William E. Hallin

1957-01-01

The most noteworthy feature of Jeffrey pine (Pinus jeffreyi Grev. & Balf. ) is its similarity in appearance and behavior to ponderosa pine (Pinus ponderosa Laws.), a much more widespread and better known species. At one time Jeffrey pine was considered to be a variety of ponderosa pine, and lumber markets make no...

Verbenone decreases whitebark pine mortality throughout a mountain pine beetle outbreak

USDA-ARS?s Scientific Manuscript database

Mountain pine beetle [Dendroctonus ponderosae (Hopkins)] outbreaks are killing large numbers of pine trees on millions of hectares in the western U.S. The ranges, impacts and frequencies of mountain pine beetle outbreaks are increasing, perhaps due to climate change. One of the species being impacte...

Population densities and tree diameter effects associated with verbenone treatments to reduce mountain pine beetle-caused mortality of lodgepole pine

Treesearch

R.A. Progar; D.C. Blackford; D.R. Cluck; S. Costello; L.B. Dunning; T. Eager; C.L. Jorgensen; A.S. Munson; B. Steed; M.J. Rinella

2013-01-01

Mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: CurcuIionidae: Scolytinae), is among the primary causes of mature lodgepole pine, Pinus contorta variety latifolia mortality. Verbenone is the only antiaggregant semiochemical commercially available for reducing mountain pine beetle infestation of...

Effect of sulfuryl fluoride on the pinewood nematode in pine wood

Treesearch

L. David Dwinell; E. Thoms; S. Prabhakaran

2003-01-01

The pinewood nematode (PUTN) (Bursaphelenchus xylophilus), the causal agent of pine wilt disease, has been intercepted in pine chips, unseasoned pine lumber, and wood packing material (WPM). Likewise, the PWN's insect vectors, Monochamus spp. (pine sawyers), have been found in pallets, crates and dunnage. The PWN, which is...

Pinus glabra Walt. Spruce Pine

Treesearch

Susan V. Kossuth; J.L. Michael

1991-01-01

Spruce pine (Pinus glabra), also called cedar pine, Walter pine, or bottom white pine, is a medium-sized tree that grows in limited numbers in swamps, river valleys, on hummocks, and along river banks of the southern Coastal Plain. Its wood is brittle, close-grained, nondurable, and is of limited commercial importance.

Estimating red pine site index in northern Minnesota.

Treesearch

1976-01-01

Methods are presented for estimating red pine site index from the height growth of red pine, site index of several associated species (jack pine, white pine, white spruce, or quaking aspen), and from easily measured soil properties. The restrictions and limitations of each method and their relative precision are discussed.

Timber management guide for shortleaf pine and oak-pine types in Missouri.

Treesearch

K.A. Brinkman; N.F. Rogers

1967-01-01

Summarizes recommended management practices for the shortleaf pine and oak-pine types in Missouri. Describes sites and soils, and silvical characteristics of pine; discusses rotations, cutting cycles, stocking levels, growing space requirements, and regeneration techniques; and prescribes treatments for stands with specified characteristics to maximize returns from...

The Austrian x red pine hybrid

Treesearch

W. B. Critchfield

1963-01-01

The genetic improvement of red pine (Pinus resinosa Ait.) presents tree breeders with one of their most difficult problems. Not only is this valuable species remarkably uniform, but until 1955 it resisted all attempts to cross it with other pines. In that year red pine and Austrian pine (P. nigra var. austriaca [...

Restoring longleaf pine (Pinus palustris Mill.) in loblolly pine (Pinus taeda L.) stands: Effects of restoration treatments on natural loblolly pine regeneration

Treesearch

Ben Knapp; Wang Geoff; Huifeng Hu; Joan Walker; Carsyn Tennant

2011-01-01

Historical land use and management practices in the southeastern United States have resulted in the dominance of loblolly pine on many upland sites that historically were occupied by longleaf pine. There is currently much interest in restoring high quality longleaf pine habitats to such areas, but managers may also desire the retention of some existing canopy trees to...

Hybridization in naturally regenerated shortleaf pine as affected by the distance to nearby artificially regenerated stands of loblolly pine

Treesearch

John F. Stewart; Charles G. Tauer; James M. Guldin; C. Dana Nelson

2013-01-01

The natural range of shortleaf pine encompasses 22 states from New York to Texas, second only to eastern white pine in the eastern United States. It is a species of minor and varying occurrence in most of these states usually found in association with other pines, but it is the only naturally occurring pine in the northwestern part of its range in Oklahoma, Arkansas,...

First report of the white pine blister rust fungus, Cronartium ribicola, infecting Pinus flexilis on Pine Mountain, Humboldt National Forest, Elko County, northeastern Nevada, U.S.A.

Treesearch

Detlev R. Vogler; Patricia E. Maloney; Tom Burt; Jacob W. Snelling

2017-01-01

In 2013, while surveying for five-needle white pine cone crops in northeastern Nevada, we observed white pine blister rust, caused by the rust pathogen Cronartium ribicola Fisch., infecting branches and stems of limber pines (Pinus flexilis James) on Pine Mountain (41.76975°N, 115.61622°W), Humboldt National Forest,...

Role of Phytotoxins in Pine Wilt Diseases

PubMed Central

Oku, Hachiro

1988-01-01

Characteristic rapid death of pines after infection by Bursaphelenchus xylophilus suggests the involvement of phytotoxins in the pine wilt disease syndrome. Crude extract from diseased pine is toxic to pine seedlings, whereas an extract from healthy pine is not. The response of seedlings to the crude toxin is more prominent in susceptible pine species than in resistant ones. Benzoic acid, catechol, dihydroconiferyl alcohol, 8-hydroxycarvotanacetone (carvone hydrate), and 10-hydroxyverbenone, which are toxic, low molecular weight metabolites, can be isolated from diseased pines. Other unidentified toxins are also found. The toxicity of some of these metabolites correlates positively to the susceptibility of pines to B. xylophilus. Some of these abnormal metabolites show synergistic toxicity when in combination. The D-isomer of 8-hydroxycarvotanacetone, dihydroconiferylalcohol, and 10-hydroxyverbenone inhibited the reproduction of B. xylophilus. Cellulase excreted by pinewood nematode also may be involved in rapid wilting. PMID:19290208

Growth of longleaf and loblolly pine planted on South Carolina Sandhill sites.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cram, Michelle, M.; Outcalt, Kenneth, W.; Zarnoch, Stanley, J.

2010-07-01

Performance of longleaf (Pinus palustris Mill.) and loblolly pine (P. taeda L.) were compared 15–19 years after outplanting on 10 different sites in the sandhillsof South Carolina. The study was established from 1988 to 1992 with bareroot seedlings artificially inoculated with Pisolithus tinctorius (Pt) or naturally inoculated with mycorrhizae in the nursery. A containerized longleaf pine treatment with and without Pt inoculation was added to two sites in 1992. Effects of the Pt nursery treatment were mixed, with a decrease in survival of bareroot longleaf pine on two sites and an increase in survival on another site. The containerized longleafmore » pine treatment substantially increased survival, which led to greater volume compared with bareroot longleaf pine. Loblolly pine yielded more volume than longleaf pine on all sites but one, where survival was negatively affected by fire. Depth of sandy surface horizon affected mean annual height growth of both loblolly and longleaf pine. Height growth per year decreased with an increase in sand depth for both species. Multiple regression analysis of volume growth(ft3/ac per year) for both species indicated a strong relationship to depth of sandy soil and survival. After 15–19 years, loblolly pine has been more productive than longleaf pine, although longleaf pine productivity may be equal to or greater than that of loblolly pine on the soils with the deepest sandy surface layers over longer rotations.« less

The Ethics of Big Data: Current and Foreseeable Issues in Biomedical Contexts.

PubMed

Mittelstadt, Brent Daniel; Floridi, Luciano

2016-04-01

The capacity to collect and analyse data is growing exponentially. Referred to as 'Big Data', this scientific, social and technological trend has helped create destabilising amounts of information, which can challenge accepted social and ethical norms. Big Data remains a fuzzy idea, emerging across social, scientific, and business contexts sometimes seemingly related only by the gigantic size of the datasets being considered. As is often the case with the cutting edge of scientific and technological progress, understanding of the ethical implications of Big Data lags behind. In order to bridge such a gap, this article systematically and comprehensively analyses academic literature concerning the ethical implications of Big Data, providing a watershed for future ethical investigations and regulations. Particular attention is paid to biomedical Big Data due to the inherent sensitivity of medical information. By means of a meta-analysis of the literature, a thematic narrative is provided to guide ethicists, data scientists, regulators and other stakeholders through what is already known or hypothesised about the ethical risks of this emerging and innovative phenomenon. Five key areas of concern are identified: (1) informed consent, (2) privacy (including anonymisation and data protection), (3) ownership, (4) epistemology and objectivity, and (5) 'Big Data Divides' created between those who have or lack the necessary resources to analyse increasingly large datasets. Critical gaps in the treatment of these themes are identified with suggestions for future research. Six additional areas of concern are then suggested which, although related have not yet attracted extensive debate in the existing literature. It is argued that they will require much closer scrutiny in the immediate future: (6) the dangers of ignoring group-level ethical harms; (7) the importance of epistemology in assessing the ethics of Big Data; (8) the changing nature of fiduciary relationships that become increasingly data saturated; (9) the need to distinguish between 'academic' and 'commercial' Big Data practices in terms of potential harm to data subjects; (10) future problems with ownership of intellectual property generated from analysis of aggregated datasets; and (11) the difficulty of providing meaningful access rights to individual data subjects that lack necessary resources. Considered together, these eleven themes provide a thorough critical framework to guide ethical assessment and governance of emerging Big Data practices.

Recovery plan for Scots pine blister rust caused by Cronartium flaccidum (Alb. & Schwein.) G. Winter and Peridermium pini (Pers.) Lév. [syn. C. asclepiadeum (Willd.) Fr., Endocronartium pini (Pers.) Y. Hiratsuka

Treesearch

Brian W. Geils; Ned B. Klopfenstein; Mee-Sook Kim; Pauline Spaine; Bryce A. Richardson; Paul J. Zambino; Charles G. Shaw; James Walla; Russ Bulluck; Laura Redmond; Kent Smith

2009-01-01

The sexually reproducing form of Scots pine blister rust, C. flaccidum, completes its life cycle alternating between pines of the subgenus Pinus and seed-plants of various families. Scots pine blister rust is also caused by a form of the rust that spreads directly from pine to pine and is named, Peridermium pini...

Predictions of fire behavior and resistance to control: for use with photo series for the ponderosa pine type, ponderosa pine and associated species type, and lodgepole pine type.

Treesearch

Franklin R. Ward; David V. Sandberg

1981-01-01

This publication presents tables on the behavior of fire and the resistance of fuels to control. The information is to be used with the publication, "Photo Series for Quantifying Forest Residues in the Ponderosa Pine Type, Ponderosa Pine and Associated Species Type, Lodgepole Pine Type" (Maxwell, Wayne G.; Ward, Franklin R. 1976. Gen. Tech. Rep. PNW-GTR-052....

Defense traits in the long-lived Great Basin bristlecone pine and resistance to the native herbivore mountain pine beetle.

PubMed

Bentz, Barbara J; Hood, Sharon M; Hansen, E Matthew; Vandygriff, James C; Mock, Karen E

2017-01-01

Mountain pine beetle (MPB, Dendroctonus ponderosae) is a significant mortality agent of Pinus, and climate-driven range expansion is occurring. Pinus defenses in recently invaded areas, including high elevations, are predicted to be lower than in areas with longer term MPB presence. MPB was recently observed in high-elevation forests of the Great Basin (GB) region, North America. Defense and susceptibility in two long-lived species, GB bristlecone pine (Pinus longaeva) and foxtail pine (P. balfouriana), are unclear, although they are sympatric with a common MPB host, limber pine (P. flexilis). We surveyed stands with sympatric GB bristlecone-limber pine and foxtail-limber pine to determine relative MPB attack susceptibility and constitutive defenses. MPB-caused mortality was extensive in limber, low in foxtail and absent in GB bristlecone pine. Defense traits, including constitutive monoterpenes, resin ducts and wood density, were higher in GB bristlecone and foxtail than in limber pine. GB bristlecone and foxtail pines have relatively high levels of constitutive defenses which make them less vulnerable to climate-driven MPB range expansion relative to other high-elevation pines. Long-term selective herbivore pressure and exaptation of traits for tree longevity are potential explanations, highlighting the complexity of predicting plant-insect interactions under climate change. No claim to original US Government works. New Phytologist © 2016 New Phytologist Trust.

Options for the management of white pine blister rust in the Rocky Mountain Region

Treesearch

Kelly S. Burns; Anna W. Schoettle; William R. Jacobi; Mary F. Mahalovich

2008-01-01

This publication synthesizes current information on the biology, distribution, and management of white pine blister rust (WPBR) in the Rocky Mountain Region. In this Region, WPBR occurs within the range of Rocky Mountain bristlecone pine (Pinus aristata), limber pine (P. flexilis), and whitebark pine (P. albicaulis...

75 FR 29686 - Proposed Establishment of the Pine Mountain-Mayacmas Viticultural Area

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-27

... states that local growers report that Pine Mountain vineyards are naturally free of mildew, a vineyard... often stall over Pine Mountain and the Mayacmas range, dropping more rain than in other areas. Pine..., these mountain soils include large amounts of sand and gravel. Pine Mountain soils are generally less...

Health of whitebark pine forests after mountain pine beetle outbreaks

Treesearch

Sandra Kegley; John Schwandt; Ken Gibson; Dana Perkins

2011-01-01

Whitebark pine (Pinus albicaulis), a keystone high-elevation species, is currently at risk due to a combination of white pine blister rust (WPBR) (Cronartium ribicola), forest succession, and outbreaks of mountain pine beetle (MPB) (Dendroctonus ponderosae). While recent mortality is often quantified by aerial detection surveys (ADS) or ground surveys, little...

Mountain pine beetle in high-elevation five-needle white pine ecosystems

Treesearch

Barbara Bentz; Elizabeth Campbell; Ken Gibson; Sandra Kegley; Jesse Logan; Diana Six

2011-01-01

Across western North America mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae, Scolytinae), populations are growing at exponential rates in pine ecosystems that span a wide range of elevations. As temperature increased over the past several decades, the flexible, thermally-regulated life-history strategies of mountain pine beetle have allowed...

Should ponderosa pine be planted on lodgepole pine sites?

Treesearch

P.H. Cochran

1984-01-01

Repeated radiation frosts caused no apparent harm to the majority of lodgepole pine (Pinus contorta Dougl.) seedlings planted on a pumice flat in south-central Oregon. For most but not all of the ponderosa pine (Pinus ponderosa Dougl.) seedlings planted with the lodgepole pine, however, damage from radiation frost resulted in...

Gypsy moth impacts in pine-hardwood mixtures

Treesearch

Kurt W. Gottschalk; Mark J. Twery

1989-01-01

Gypsy moth has affected pine-hardwood mixtures, especially oak-pine stands, since the late 1800's. Several old and new studies on impacts in mixed stands are reviewed. When pines are heavily defoliated, considerable growth loss and mortality can occur. Mortality is heaviest in understory white pine trees, Impact information is used to suggest silvicultural...

Southern Pine Beetle Information System (SPBIS)

Treesearch

Valli Peacher

2011-01-01

The southern pine beetle (SPB) is the most destructive forest insect in the South. The SPB attacks all species of southern pine, but loblolly and shortleaf are most susceptible. The Southern Pine Beetle Information System (SPBIS) is the computerized database used by the national forests in the Southern Region for tracking individual southern pine beetle infestations....

Mountain Pine Beetle

Treesearch

Gene D. Amman; Mark D. McGregor; Robert E. Jr. Dolph

1989-01-01

The mountain pine beetle, Dendroctonus ponderosae Hopkins, is a member of a group of beetles known as bark beetles: Except when adults emerge and attack new trees, the mountain pine beetle completes its life cycle under the bark. The beetle attacks and kills lodgepole, ponderosa, sugar, and western white pines. Outbreaks frequently develop in lodgepole pine stands that...

Monitoring limber pine health in the Rocky Mountains and North Dakota

Treesearch

Kelly Burns; Jim Blodgett; Marcus Jackson; Brian Howell; William Jacobi; Anna Schoettle; Anne Marie Casper; Jennifer Klutsch

2011-01-01

Ecological impacts are occurring as white pine blister rust spreads and intensifies through ecologically and culturally important limber pine ecosystems of the Rocky Mountains and surrounding areas. The imminent threat of mountain pine beetle has heightened concerns. Therefore, information on the health status of limber pine is needed to facilitate management and...

Seeding and planting pines

Treesearch

Ralph E. Willard; L. Max Schmollinger

1989-01-01

Pines that occur naturally in parts of the region, as well as those that do not, have been introduced throughout. Pines usually produce greater volumes of wood faster than hardwoods, but in many parts of the region there is no market for pine stumpage or logs. Aside from wood production, pines are established for Christmas trees, windbreaks, landscaping, erosion...

Guidelines for regenerating southern pine beetle spots

Treesearch

J.C.G. Goelz; B.L. Strom; J.P. Barnett; M.A. Sword Sayer

2012-01-01

Southern pine forests are of exceptional commercial and ecological importance to the United States, and the southern pine beetle is their most serious insect pest. The southern pine beetle generally kills overstory pines, causing spots of tree mortality that are unpredictable in time and space and frequently disruptive to management activities and goals. The canopy...

Soil moisture and the distribution of lodgepole and ponderosa pine: a review of the literature.

Treesearch

Robert F. Tarrant

1953-01-01

Despite a number of published studies and observations of the factors affecting the distribution of lodgepole pine (Pinus contorta var, latifolia) and Ponderosa pine (Pinus ponderosa), some misunderstanding still exists as to the significance of the extensive stands of lodgepole pine in the ponderosa pine...

Pleistocene Refugia for Longleaf and Loblolly Pines

Treesearch

Ronald C. Schmidtling; V. Hipkins; E. Carroll

2000-01-01

Longleaf pine (P. palustris Mill.) and loblolly pine (P. taeda L.) are two species that are common to the coastal plain of the southeastern United States. The current natural range of the two species is largely overlapping. Loblolly pine occurs in 13 southeastern states. Longleaf pine is the more austral of the two species,...

Re-measurement of whitebark pine infection and mortality in the Canadian Rockies

Treesearch

Cyndi M. Smith; Brenda Shepherd; Cameron Gillies; Jon Stuart-Smith

2011-01-01

Whitebark pine (Pinus albicaulis) populations are under threat across the species' range from white pine blister rust (Cronartium ribicola), mountain pine beetle (Dendroctonus ponderosae), fire exclusion and climate change (Tomback and Achuff 2010). Loss of whitebark pine is predicted to have cascading effects on the following ecological services: provision of...

State of pine decline in the southeastern United States

Treesearch

Lori Eckhardt; Mary Anne Sword Sayer; Don Imm

2010-01-01

Pine decline is an emerging forest health issue in the southeastern United States. Observations suggest pine decline is caused by environmental stress arising from competition, weather, insects and fungi, anthropogenic disturbances, and previous management. The problem is most severe for loblolly pine on sites that historically supported longleaf pine, are highly...

White pine blister rust resistance research in Minnesota and Wisconsin

Treesearch

Andrew David; Paul Berrang; Carrie Pike

2012-01-01

The exotic fungus Cronartium ribicola causes the disease white pine blister rust on five-needled pines throughout North America. Although the effects of this disease are perhaps better known on pines in the western portion of the continent, the disease has also impacted regeneration and growth of eastern white pine (Pinus strobus L. ...

Silvicultural treatments for converting loblolly pine to longleaf pine dominance: Effects on planted longleaf pine seedlings

Treesearch

Huifeng Hu; G.Geoff Wang; Joan L. Walker; Benjamin O. Knapp

2012-01-01

A field study was installed to test silvicultural treatments for establishing longleaf pine (Pinus palustris Mill) in loblolly pine (P. taeda L.) stands. Harvesting was used to create seven canopy treatments, four with uniformly distributed canopies at different residual basal areas [Control (16.2 m2/ha),...

Climate change may restrict dryland forest regeneration in the 21st century

USGS Publications Warehouse

Petrie, M.D.; Bradford, John B.; Hubbard, R.M.; Lauenroth, W.K.; Andrews, Caitlin; Schlaepfer, D.R.

2017-01-01

The persistence and geographic expansion of dryland forests in the 21st century will be influenced by how climate change supports the demographic processes associated with tree regeneration. Yet, the way that climate change may alter regeneration is unclear. We developed a quantitative framework that estimates forest regeneration potential (RP) as a function of key environmental conditions for ponderosa pine, a key dryland forest species. We integrated meteorological data and climate projections for 47 ponderosa pine forest sites across the western United States, and evaluated RP using an ecosystem water balance model. Our primary goal was to contrast conditions supporting regeneration among historical, mid-21st century and late-21st century time frames. Future climatic conditions supported 50% higher RP in 2020–2059 relative to 1910–2014. As temperatures increased more substantially in 2060–2099, seedling survival decreased, RP declined by 50%, and the frequency of years with very low RP increased from 25% to 58%. Thus, climate change may initially support higher RP and increase the likelihood of successful regeneration events, yet will ultimately reduce average RP and the frequency of years with moderate climate support of regeneration. Our results suggest that climate change alone may begin to restrict the persistence and expansion of dryland forests by limiting seedling survival in the late 21st century.

Climate change may restrict dryland forest regeneration in the 21st century.

PubMed

Petrie, M D; Bradford, J B; Hubbard, R M; Lauenroth, W K; Andrews, C M; Schlaepfer, D R

2017-06-01

The persistence and geographic expansion of dryland forests in the 21st century will be influenced by how climate change supports the demographic processes associated with tree regeneration. Yet, the way that climate change may alter regeneration is unclear. We developed a quantitative framework that estimates forest regeneration potential (RP) as a function of key environmental conditions for ponderosa pine, a key dryland forest species. We integrated meteorological data and climate projections for 47 ponderosa pine forest sites across the western United States, and evaluated RP using an ecosystem water balance model. Our primary goal was to contrast conditions supporting regeneration among historical, mid-21st century and late-21st century time frames. Future climatic conditions supported 50% higher RP in 2020-2059 relative to 1910-2014. As temperatures increased more substantially in 2060-2099, seedling survival decreased, RP declined by 50%, and the frequency of years with very low RP increased from 25% to 58%. Thus, climate change may initially support higher RP and increase the likelihood of successful regeneration events, yet will ultimately reduce average RP and the frequency of years with moderate climate support of regeneration. Our results suggest that climate change alone may begin to restrict the persistence and expansion of dryland forests by limiting seedling survival in the late 21st century. © 2017 by the Ecological Society of America.

Midgut tissue of male pine engraver , Ips pini, synthesizes monoterpenoid pheromone component ipsdienol de novo

NASA Astrophysics Data System (ADS)

Hall, Gregory M.; Tittiger, Claus; Andrews, Gracie L.; Mastick, Grant S.; Kuenzli, Marilyn; Luo, Xin; Seybold, Steven J.; Blomquist, Gary J.

2002-02-01

For over three decades the site and pathways of bark beetle aggregation pheromone production have remained elusive. Studies on pheromone production in Ips spp. bark beetles have recently shown de novo biosynthesis of pheromone components via the mevalonate pathway. The gene encoding a key regulated enzyme in this pathway, 3-hydroxy-3-methylglutaryl-CoA reductase ( HMG-R), showed high transcript levels in the anterior midgut of male pine engravers, Ips pini (Say) (Coleoptera:Scolytidae). HMG-R expression in the midgut was sex, juvenile hormone, and feeding dependent, providing strong evidence that this is the site of acyclic monoterpenoid (ipsdienol) pheromone production in male beetles. Additionally, isolated midgut tissue from fed or juvenile hormone III (JH III)-treated males converted radiolabeled acetate to ipsdienol, as assayed by radio-HPLC. These data support the de novo production of this frass-associated aggregation pheromone component by the mevalonate pathway. The induction of a metazoan HMG-R in this process does not support the postulated role of microorganisms in ipsdienol production.

Gaining forests but losing ground: A GIS evaluation in a Himalayan watershed

NASA Astrophysics Data System (ADS)

Schreier, Hans; Brown, Sandra; Schmidt, Margaret; Shah, Pravakar; Shrestha, Bubhan; Nakarmi, Gopal; Subba, Khagendra; Wymann, Susanne

1994-01-01

GIS overlay techniques were used to provide a quantitative historic documentation of deforestation and land-use dynamics in the Middle Mountains of Nepal between 1947 and 1990. Deforestation was most critical in the 1960s, but active afforestation programs in the 1980s have reversed the process. In spite of these trends, the degradation problem is more complex. The GIS evaluation showed that 86% of the recently afforested land is now under pine plantations located primarily at lower elevations and moderately steep slopes. In contrast, rainfed agricultural expansion is most pronounced on acidic soils and steeper, upper elevation sites, suggesting marginalization of agriculture. Agricultural expansion coupled with major losses of grazing land to pine forests are the key processes pointing towards major animal feed deficits. An alternative animal feed source is suggested through GIS using a topographically based microclimatic classification to generate a tree-planting map where the optimum ecological conditions for selective native fodder tree species are identified.

Effect of water stress and fungal inoculation on monoterpene emission from an historical and a new pine host of the mountain pine beetle.

PubMed

Lusebrink, Inka; Evenden, Maya L; Blanchet, F Guillaume; Cooke, Janice E K; Erbilgin, Nadir

2011-09-01

The mountain pine beetle (Dendroctonus ponderosae, MPB) has killed millions of lodgepole pine (Pinus contorta) trees in Western Canada, and recent range expansion has resulted in attack of jack pine (Pinus banksiana) in Alberta. Establishment of MPB in the Boreal forest will require use of jack pine under a suite of environmental conditions different from those it typically encounters in its native range. Lodgepole and jack pine seedlings were grown under controlled environment conditions and subjected to either water deficit or well watered conditions and inoculated with Grosmannia clavigera, a MPB fungal associate. Soil water content, photosynthesis, stomatal conductance, and emission of volatile organic compounds (VOCs) were monitored over the duration of the six-week study. Monoterpene content of bark and needle tissue was measured at the end of the experiment. β-Phellandrene, the major monoterpene in lodgepole pine, was almost completely lacking in the volatile emission profile of jack pine. The major compound in jack pine was α-pinene. The emission of both compounds was positively correlated with stomatal conductance. 3-Carene was emitted at a high concentration from jack pine seedlings, which is in contrast to monoterpene profiles of jack pine from more southern and eastern parts of its range. Fungal inoculation caused a significant increase in total monoterpene emission in water deficit lodgepole pine seedlings right after its application. By 4 weeks into the experiment, water deficit seedlings of both species released significantly lower levels of total monoterpenes than well watered seedlings. Needle tissue contained lower total monoterpene content than bark. Generally, monoterpene tissue content increased over time independent from any treatment. The results suggest that monoterpenes that play a role in pine-MPB interactions differ between lodgepole and jack pine, and also that they are affected by water availability.

First record of the Kuwana pine mealybug Crisicoccus pini (Kuwana) in Italy: a new threat to Italian pine forests?

PubMed

Boselli, Mauro; Pellizzari, Giuseppina

2016-02-19

The Asiatic Kuwana pine mealybug, Crisicoccus pini (Kuwana, 1902) (Hemiptera, Pseudococcidae), is reported in Italy for the first time. It was detected in September 2015 on maritime pine, Pinus pinaster, and stone pine, Pinus pinea, trees growing in the town of Cervia (Ravenna Province), Northern Italy. The mealybug has caused yellowing and decline of the pine trees. Pinus pinea is recorded here as a new host for C. pini.

NREL Supercomputer Tackles Grid Challenges | News | NREL

Science.gov Websites

traditional database processes. Photo by Dennis Schroeder, NREL "Big data" is playing an imagery, and large-scale simulation data. Photo by Dennis Schroeder, NREL "Peregrine provides much . Photo by Dennis Schroeder, NREL Collaboration is key, and it is hard-wired into the ESIF's core. NREL

A Tiny College Nurtures Big Ideas

ERIC Educational Resources Information Center

Carlson, Scott

2012-01-01

The College of the Atlantic (COA)--330 students and 43 faculty members ensconced on Maine's remote Mount Desert Island--has resisted growth, seeing smallness as key to providing an unusual education that cuts across disciplines, rejects academic conventions, and takes a highly personalized approach to teaching and learning. The emphasis on…

Focusing on the big picture: urban vegetation and eco-hydrological services in U.S. cities (abstract)

EPA Science Inventory

Trees and vegetation can be key components of urban green infrastructure and green spaces such as parks and residential yards. Large trees, characterized by broad canopies, and high leaf and stem volumes, can intercept a substantial amount of stormwater while promoting evapotrans...

Sagebrush identification, ecology, and palatability relative to sage-grouse

Treesearch

Roger Rosentreter

2005-01-01

Basic identification keys and comparison tables for 23 low and big sagebrush (Artemisia) taxa are presented. Differences in sagebrush ecology, soil temperature regimes, geographic range, palatability, mineralogy, and chemistry are discussed. Coumarin, a chemical produced in the glands of some Artemisia species, causes UV-light fluorescence of the...

Asset management: the big picture.

PubMed

Deinstadt, Deborah C

2005-10-01

To develop an comprehensive asset management plan, you need, first of all, to understand the asset management continuum. A key preliminary step is to thoroughly assess the existing equipment base. A critical objective is to ensure that there are open lines of communication among the teams charged with managing the plan's various phases.

Making Data Management Accessible in the Undergraduate Chemistry Curriculum

ERIC Educational Resources Information Center

Reisner, Barbara A.; Vaughan, K. T. L.; Shorish, Yasmeen L.

2014-01-01

In the age of "big data" science, data management is becoming a key information literacy skill for chemistry professionals. To introduce this skill in the undergraduate chemistry major, an activity has been developed to familiarize undergraduates with data management. In this activity, students rename and organize cards that represent…

Big data analytics : predicting traffic flow regimes from simulated connected vehicle messages using data analytics and machine learning.

DOT National Transportation Integrated Search

2016-12-25

The key objectives of this study were to: 1. Develop advanced analytical techniques that make use of a dynamically configurable connected vehicle message protocol to predict traffic flow regimes in near-real time in a virtual environment and examine ...

Growth, aboveground biomass, and nutrient concentration of young Scots pine and lodgepole pine in oil shale post-mining landscapes in Estonia.

PubMed

Kuznetsova, Tatjana; Tilk, Mari; Pärn, Henn; Lukjanova, Aljona; Mandre, Malle

2011-12-01

The investigation was carried out in 8-year-old Scots pine (Pinus sylvestris L.) and lodgepole pine (Pinus contorta var. latifolia Engelm.) plantations on post-mining area, Northeast Estonia. The aim of the study was to assess the suitability of lodgepole pine for restoration of degraded lands by comparing the growth, biomass, and nutrient concentration of studied species. The height growth of trees was greater in the Scots pine stand, but the tree aboveground biomass was slightly larger in the lodgepole pine stand. The aboveground biomass allocation to the compartments did not differ significantly between species. The vertical distribution of compartments showed that 43.2% of the Scots pine needles were located in the middle layer of the crown, while 58.5% of the lodgepole pine needles were in the lowest layer of the crown. The largest share of the shoots and stem of both species was allocated to the lowest layer of the crown. For both species, the highest NPK concentrations were found in the needles and the lowest in the stems. On the basis of the present study results, it can be concluded that the early growth of Scots pine and lodgepole pine on oil shale post-mining landscapes is similar.

Analysis of Big Data from Space

NASA Astrophysics Data System (ADS)

Tan, J.; Osborne, B.

2017-09-01

Massive data have been collected through various space mission. To maximize the investment, the data need to be exploited to the fullest. In this paper, we address key topics on big data from space about the status and future development using the system engineering method. First, we summarized space data including operation data and mission data, on their sources, access way, characteristics of 5Vs and application models based on the concept of big data, as well as the challenges they faced in application. Second, we gave proposals on platform design and architecture to meet the demand and challenges on space data application. It has taken into account of features of space data and their application models. It emphasizes high scalability and flexibility in the aspects of storage, computing and data mining. Thirdly, we suggested typical and promising practices for space data application, that showed valuable methodologies for improving intelligence on space application, engineering, and science. Our work will give an interdisciplinary knowledge to space engineers and information engineers.

Earthquake Related Variation of Total Electron Content in Ionosphere over Chinese Mainland Derived from Observations of a Nationwide GNSS Network

NASA Astrophysics Data System (ADS)

Gan, Weijun

2016-07-01

Crustal Movement Observation Network of China (CMONOC) is a key national scientific infrastructure project carried out during 1997-2012 with 2 phases. The network is composed of 260 continuously observed GNSS stations (CORS) and 2081 campaign mode GNSS stations, with the main purpose to monitor the crustal movement, perceptible water vapor (PWV), total electron content (TEC), and many other tectonic and environmental elements around mainland China, by mainly using the Global Navigation Satellite System (GNSS) technology. Here, based on the GNSS data of 260 CORS of COMNOC for about 5 years, we investigated the characteristics of TEC in ionosphere over Chinese Mainland and discussed if there was any abnormal change of TEC before and after a big earthquake. our preliminary results show that it is hard to see any convincing precursor of TEC before a big earthquake. However, the huge energy released by a big earthquake can obviously disturb the TEC over meizoseismal area.

Carbon sequestration and natural longleaf pine ecosystems

Treesearch

Ralph S. Meldahl; John S. Kush

2006-01-01

A fire-maintained longleaf pine (Pinus palustris Mill.) ecosystem may offer the best option for carbon (C) sequestration among the southern pines. Longleaf is the longest living of the southern pines, and products from longleaf pine will sequester C longer than most since they are likely to be solid wood products such as structural lumber and poles....

Southern Pine Beetle Behavior and Semiochemistry

Treesearch

Brian T. Sullivan

2011-01-01

The southern pine beetle (SPB) feeds both as adults and larvae within the inner bark of pine trees, which invariably die as a result of colonization. Populations of the SPB erupt periodically and produce catastrophic losses of pines, while at other times the beetles persist almost undetectably in the environment. The southern pine beetle has evolved behaviors that...

The push–pull tactic for mitigation of mountain pine beetle (Coleoptera: Curculionidae) damage in lodgepole and whitebark pines

Treesearch

Nancy E. Gillette; Constance J. Mehmel; Sylvia R. Mori; Jeffrey N. Webster; David L. Wood; Nadir Erbilgin; Donald R. Owen

2012-01-01

In an attempt to improve semiochemical-based treatments for protecting forest stands from bark beetle attack, we compared push-pull versus push-only tactics for protecting lodgepole pine (Pinus contorta Douglas ex Loudon) and whitebark pine (Pinus albicaulis Engelm.) stands from attack by mountain pine beetle (...

Forest development and carbon dynamics after mountain pine beetle outbreaks

Treesearch

E. Matthew Hansen

2014-01-01

Mountain pine beetles periodically infest pine forests in western North America, killing many or most overstory pine stems. The surviving secondary stand structure, along with recruited seedlings, will form the future canopy. Thus, even-aged pine stands become multiaged and multistoried. The species composition of affected stands will depend on the presence of nonpines...

Tomicus piniperda (Coleoptera: Scolytidae) Emergence in Relation to Burial Depth of Brood Logs

Treesearch

Robert A. Haack; Toby R. Petrice; Therese M. Poland

2000-01-01

The pine shoot beetle, Tomicus piniperda (L.), is an exotic pest of pines, Pinus spp., that was first found in the United States in 1992. A federal quarantine currently regulates movement of pine Christmas trees and pine nursery stock from infested to uninfested counties. The current national Pine Shoot Beetle Compliance Management...

Distinguishing features of loblolly and shortleaf pine seeds: implications for monitoring seed production in mixed stands

Treesearch

Michael G. Shelton; Michael D. Cain

1996-01-01

Monitoring seed production in mixed loblolly pine - shortleaf pine (Pinus taeda L. and Pinus echinata Mill. respectively) stands may require identifying individual seeds by species. Although loblolly pine seeds are on average heavier and larger than those of shortleaf pine, there is considerable overlap in these properties for...

Distribution of longleaf pine in the Southeastern United States and its association with climatic conditions

Treesearch

Zhen Sui; Zhaofei Fan; Michael K. Crosby; Xingang Fan

2015-01-01

Longleaf pine (Pinus palustris Mill.) has irreplaceable ecological value in the southeastern United States. However, longleaf pine-grassland ecosystems have been dramatically declining since European settlement. From the aspect of longleaf pine restoration and management, this study calculated longleaf pine importance values in each southern county and then conducted...

Residual activity of carbaryl protected lodgepole pine against mountain pine beetle, Dillon, Colorado, 1982 and 1983

Treesearch

Marion Page; Michael I. Haverty; Charles E. Richmond

1985-01-01

The mountain pine beetle (Dendroctonus ponderosae Hopkins) is the most destructive insect that attacks lodgepole pine (Pinus contorta Dougl.), a species valued for multiple uses throughout North America. The effective residual life of carbaryl, applied as a 2 percent suspension of Sevimol to the bark of lodgepole pine to prevent...

Evaluating satellite imagery for estimating mountain pine beetle-caused lodgepole pine mortality: Current status

Treesearch

B. J. Bentz; D. Endreson

2004-01-01

Spatial accuracy in the detection and monitoring of mountain pine beetle populations is an important aspect of both forest research and management. Using ground-collected data, classification models to predict mountain pine beetle-caused lodgepole pine mortality were developed for Landsat TM, ETM+, and IKONOS imagery. Our results suggest that low-resolution imagery...

Native ectomycorrhizal fungi of limber and whitebark pine: Necessary for forest sustainability?

Treesearch

Cathy L. Cripps; Robert K. Antibus

2011-01-01

Ectomycorrhizal fungi are an important component of northern coniferous forests, including those of Pinus flexilis (limber pine) and P. albicaulis (whitebark pine) which are being decimated by white pine blister rust and mountain pine beetles. Ectomycorrhizal fungi are known to promote seedling establishment, tree health, and may play a role in forest sustainability....

Mountain pine beetle in lodgepole pine: mortality and fire implications (Project INT-F-07-03)

Treesearch

Jennifer G. Klutsch; Daniel R. West; Mike A Battaglia; Sheryl L. Costello; José F. Negrón; Charles C. Rhoades; John Popp; Rick Caissie

2013-01-01

Mountain pine beetle (Dendroctonus ponderosae Hopkins) has infested over 2 million acres of lodgepole pine (Pinus contorta Dougl. ex Loud.) forest since an outbreak began approximately in 2000 in north central Colorado. The tree mortality from mountain pine beetle outbreaks has the potential to alter stand composition and stand...

Mountain pine beetle host selection behavior confirms high resistance in Great Basin bristlecone pine

Treesearch

Erika L. Eidson; Karen E. Mock; Barbara J. Bentz

2017-01-01

Over the last two decades, mountain pine beetle (Dendroctonus ponderosae) populations reached epidemic levels across much of western North America, including high elevations where cool temperatures previously limited mountain pine beetle persistence. Many high-elevation pine species are susceptible hosts and experienced high levels of mortality in recent outbreaks, but...

Hardwood-pine mixedwoods stand dynamics following thinning and prescribed burning

Treesearch

Callie Jo Schweitzer; Daniel C. Dey; Yong Wang

2016-01-01

Restoration of hardwood-pine (Pinus L.) mixedwoods is an important man-agement goal in many pine plantations in the southern Cumberland Plateau in north-central Alabama, USA.  Pine plantations have been relatively un-managed since initiation, and thus include a diversity of hardwoods developing in the understory.  These unmanaged pine plantations...

An Old-Growth Definition for Wet Pine Forests, Woodlands, and Savannas

Treesearch

William R. Harms

1996-01-01

The ecological, site, and vegetation characteristics of pine wetland forests of the flatwoods region of the Southeastern United States are described. Provisional working definitions of old-growth characteristics are provided for longleaf pine, slash pine, and pond pine forests. These definitions can be used to identify and evaluate stands for retention in old-growth...

Tip moth control and loblolly pine growth in intensive pine culture: four year results

Treesearch

David L. Kulhavy; Jimmie L. Yeiser; L. Allen Smith

2006-01-01

Twenty-two treatments replicated four times were applied to planted loblolly pine, Pinus taeda L., on bedded industrial forest land in east Texas for measurement of growth impact of Nantucket pine tip moth (NPTM), Rhyacionia frustrana Comstock, and effects on pine growth over 2 years. Treatments were combinations of Velpar®,...

Biogeography and diversity of pines in the Madrean Archipelago

Treesearch

George M. Ferguson; Aaron D. Flesch; Thomas R. Van Devender

2013-01-01

Pines are important dominants in pine-oak, pine and mixed-conifer forests across the Colorado Plateau, southern Rocky Mountains, Sierra Madre Occidental, and in the intervening Sky Islands of the United States-Mexico borderlands. All 17 native species of pines in the Sky Islands region or their adjacent mountain mainlands reach the northern or southern margins of their...

Potting Media Affect Growth and Disease Development of Container-Grown Southern Pines

Treesearch

William H. Pawuk

1981-01-01

Longleaf pine (Pinus palustris Mill.) and shortleaf pine (P. echinata Mill.) seedlings grew best in equal parts of peat and vermiculite with a low pH. Seedlings grew better in shredded pine cone media than pine bark media. Growth increased when soil or vermiculite was added to cone or bark chips. Commercial bark-vermiculite...

White pine blister rust in the interior Mountain West

Treesearch

Kelly Burns; Jim Blodgett; Dave Conklin; Brian Geils; Jim Hoffman; Marcus Jackson; William Jacobi; Holly Kearns; Anna Schoettle

2010-01-01

White pine blister rust is an exotic, invasive disease of white, stone, and foxtail pines (also referred to as white pines or five-needle pines) in the genus Pinus and subgenus Strobus (Price and others 1998). Cronartium ribicola, the fungus that causes WPBR, requires an alternate host - currants and gooseberries in the genus Ribes and species of Pedicularis...

Prediction and identification of Korean Pine (Pinus koraiensis) vicilin as a food allergen (abstract)

USDA-ARS?s Scientific Manuscript database

RATIONALE: Pine nut allergy cases have been reported, but pine nut allergens remain to be identified and characterized. Korean pine nut is one of the major varieties of pine nuts that are widely consumed. Vicilins belong to one of a few protein families that contain more than 85% of the known food a...

Prey handling and diet of Louisiana pine snakes (Pituophis ruthveni) and black pine snakes (P. melanoleucus lodingi), with comparisons to other selected colubrid snakes

Treesearch

D. Craig Rudolph; Shirley J. Burgdorf; Richard N. Conner; Christopher S. Collins; Daniel Saenz; Richard R. Schaefer; Toni Trees; C. Michael Duran; Marc Ealy; John G. Himes

2002-01-01

Diet and prey handling behavior were determined for Louisiana pine snakes (Pituophis ruthveni) and black pine snakes (P. melanoleucus lodingi). Louisiana pine snakes prey heavily on Baird's pocket gophers (Geomys breviceps), with which they are sympatric, and exhibit specialized behaviors that facilitate...

Southern Pine Beetle Competitors

Treesearch

Fred M. Stephen

2011-01-01

When southern pine beetles mass attack a living pine tree, if colonization is successful the tree dies and its phloem becomes immediately available to a complex of other bark beetles and long-horned beetles, all of which, in order to reproduce, compete for the new resource. In southern pines the phloem-inhabiting guild is composed of the southern pine beetle...

Influence of seed weight on early development of eastern white pine

Treesearch

M. E., Jr. Demeritt; H. W., Jr. Hocker

1975-01-01

In the Northeast, eastern white pine (Pinus strobus L.) cannot be relied upon to consistently regenerate naturally due to the destruction of the cone crops by the white pine cone beetle (Conopthorus coniperda Schwarz). The white pine cone beetle has been reported to have destroyed the white pine cone crops for nine consecutive...

Children monosensitized to pine nuts have similar patterns of sensitization.

PubMed

Novembre, Elio; Mori, Francesca; Barni, Simona; Ferrante, Giuliana; Pucci, Neri; Ballabio, Cinzia; Uberti, Francesca; Penas, Elena; Restani, Patrizia

2012-12-01

Several cases of pine nut allergies and anaphylaxis have been reported in the literature, but only few pine nut allergens have been characterized. The aim of this research is to identify through immunoelectrophoretic techniques the major pine nut allergens in a group of children monosensitized to pine nuts. We studied five children with pine nut allergies and no other sensitization to food except to pine nuts, confirmed by in vivo (prick test, prick-to-prick) and in vitro tests (specific IgE determinations [CAP-FEIA]). The protein profile of pine nuts was analyzed by Sodium Dodecyl sulfate Polyacrylamide Gel Electrophoresis (SDS-PAGE). Immunoblotting was performed after incubation of membranes with the sera from the children included in the present study. Immunoblotting (SDS-PAGE) demonstrated five similar bands between 6 and 47 kDa in all the subjects studied. These bands should be considered the potential allergens for pine nut allergic children. © 2012 John Wiley & Sons A/S.

Pine as Fast Food: Foraging Ecology of an Endangered Cockatoo in a Forestry Landscape

PubMed Central

Stock, William D.; Finn, Hugh; Parker, Jackson; Dods, Ken

2013-01-01

Pine plantations near Perth, Western Australia have provided an important food source for endangered Carnaby’s Cockatoos (Calyptorhynchus latirostris) since the 1940s. Plans to harvest these plantations without re-planting will remove this food source by 2031 or earlier. To assess the impact of pine removal, we studied the ecological association between Carnaby’s Cockatoos and pine using behavioural, nutritional, and phenological data. Pine plantations provided high densities of seed (158 025 seeds ha−1) over a large area (c. 15 000 ha). Carnaby’s Cockatoos fed throughout these plantations and removed almost the entire annual crop of pine cones. Peak cockatoo abundance coincided with pine seed maturation. Pine seed had energy and protein contents equivalent to native food sources and, critically, is available in summer when breeding pairs have young offspring to feed. This strong and enduring ecological association clearly suggests that removing pine will have a significant impact on this endangered species unless restoration strategies, to establish alternative food sources, are implemented. PMID:23593413

Biodiversity losses: The downward spiral

USGS Publications Warehouse

Tomback, Diana F.; Kendall, Katherine C.; Tomback, Diana F.; Arno, Stephen F.; Keane, Robert E.

2001-01-01

The dramatic decline of whitebark pine (Pinus albicaulis) populations in the northwestern United States and southwestern Canada from the combined effects of fire exclusion, mountain pine beetles (Dendroctonus ponderosae), and white pine blister rust (Cronartium ribicola), and the projected decline of whitebark pine populations rangewide (Chapters 10 and 11) do not simply add up to local extirpations of a single tree species. Instead, the loss of whitebark pine has broad ecosystem-level consequences, eroding local plant and animal biodiversity, changing the time frame of succession, and altering the distribution of subalpine vegetation (Chapter 1). One potential casualty of this decline may be the midcontinental populations of the grizzly bear (Ursus arctos horribilis), which use whitebark pine seeds as a major food source (Chapter 7). Furthermore, whitebark pine is linked to other white pine ecosystems in the West through its seed-disperser, Clark's nutcracker (Nucifraga columbiana) (Chapter 5). Major declines in nutcracker populations ultimately seal the fate of several white pine ecosystems, and raise the question of whether restoration is possible once a certain threshold of decline is reached.

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups.

PubMed

Koonin, Eugene V; Wolf, Yuri I; Nagasaki, Keizo; Dolja, Valerian V

2008-12-01

The recent discovery of RNA viruses in diverse unicellular eukaryotes and developments in evolutionary genomics have provided the means for addressing the origin of eukaryotic RNA viruses. The phylogenetic analyses of RNA polymerases and helicases presented in this Analysis article reveal close evolutionary relationships between RNA viruses infecting hosts from the Chromalveolate and Excavate supergroups and distinct families of picorna-like viruses of plants and animals. Thus, diversification of picorna-like viruses probably occurred in a 'Big Bang' concomitant with key events of eukaryogenesis. The origins of the conserved genes of picorna-like viruses are traced to likely ancestors including bacterial group II retroelements, the family of HtrA proteases and DNA bacteriophages.

Microbial nitrogen cycling response to forest-based bioenergy production.

PubMed

Minick, Kevan J; Strahm, Brian D; Fox, Thomas R; Sucre, Eric B; Leggett, Zakiya H

2015-12-01

Concern over rising atmospheric CO2 and other greenhouse gases due to fossil fuel combustion has intensified research into carbon-neutral energy production. Approximately 15.8 million ha of pine plantations exist across the southeastern United States, representing a vast land area advantageous for bioenergy production without significant landuse change or diversion of agricultural resources from food production. Furthermore, intercropping of pine with bioenergy grasses could provide annually harvestable, lignocellulosic biomass feedstocks along with production of traditional wood products. Viability of such a system hinges in part on soil nitrogen (N) availability and effects of N competition between pines and grasses on ecosystem productivity. We investigated effects of intercropping loblolly pine (Pinus taeda) with switchgrass (Panicum virgatum) on microbial N cycling processes in the Lower Coastal Plain of North Carolina, USA. Soil samples were collected from bedded rows of pine and interbed space of two treatments, composed of either volunteer native woody and herbaceous vegetation (pine-native) or pure switchgrass (pine-switchgrass) in interbeds. An in vitro 15N pool-dilution technique was employed to quantify gross N transformations at two soil depths (0-5 and 5-15 cm) on four dates in 2012-2013. At the 0-5 cm depth in beds of the pine-switchgrass treatment, gross N mineralization was two to three times higher in November and February compared to the pine-native treatment, resulting in increased NH4(+) availability. Gross and net nitrification were also significantly higher in February in the same pine beds. In interbeds of the pine-switchgrass treatment, gross N mineralization was lower from April to November, but higher in February, potentially reflecting positive effects of switchgrass root-derived C inputs during dormancy on microbial activity. These findings indicate soil N cycling and availability has increased in pine beds of the pine-switchgrass treatment compared to those of the pine-native treatment, potentially alleviating any negative effects of N competition between pine and switchgrass. We expect that reduced soil C in the pine-switchgrass treatment, effects of pine and switchgrass rooting on soil C availability, and plant N demand are major factors influencing soil N transformations. Future research should examine rooting architecture in-intercropped systems and the effects on soil microbial communities and function.

Workshop proceedings: research and management in whitebark pine ecosystems

USGS Publications Warehouse

Kendall, Katherine C.; Coen, Brenda

1994-01-01

The purpose of this workshop is to exchange information on on-going and soon-to-be-initiated whitebark pine research and management projects. By doing so we hope to encourage future work on this valuable species. We also hope to promote the use of consistent methods for evaluation and investigation of whitebark pine, and to provide avenues of collaboration. Speakers will present information on a variety of topics related to whitebark pine management and research. Featured presentation topics include anthropomorphic utilization of whitepark pine forests, whitebark pine natural regeneration, blister rust and the decline of whitebark pine, blister rust resistance studies, ecological mapping of the species, restoration and management projects, and survey/monitoring techniques. Information gained from these presentations may hopefully be used in the planning of future projects for the conservation of whitebark pine.

The peptidase inhibitor CGS-26303 increases endothelin converting enzyme-1 expression in endothelial cells through accumulation of big endothelin-1

PubMed Central

Raoch, V; Martinez-Miguel, P; Arribas-Gomez, I; Rodriguez-Puyol, M; Rodriguez-Puyol, D; Lopez-Ongil, S

2007-01-01

Background and purpose: CGS-26303 inhibits endothelin converting enzyme (ECE)-1 more specifically than phosphoramidon. We have studied the effect of CGS-26303 on ECE-1 expression in bovine aortic endothelial cells. Methods: ECE-1 activity and big endothelin (ET)-1 levels were measured by ELISA, ECE-1 expression using western and northern blot and promoter activity using transfection assays. Key results: ECE-1 activity was completely inhibited by CGS-26303 25 μ M and phosphoramidon 100 μ M. CGS-26303 and phosphoramidon, though not thiorphan, a neutral endopeptidase (NEP) inhibitor, stimulated ECE-1 expression in cells (maximal effect at 16 h, 25 μ M). Cycloheximide abolished that effect. CGS-26303 induced ECE-1 mRNA expression and ECE-1 promoter activity. CGS-35066, a selective ECE-1 inhibitor, mimicked the effects of CGS-26303, suggesting that the effect was specific to ECE-1 inhibition. Big ET-1 accumulated in the cells and in the supernatants after CGS-26303 treatment. Neither exogenously added ET-1 nor the blockade of their receptors with bosentan modified ECE-1 protein. When big ET-1 was added to cells, significant increases in ECE-1 protein content and ECE-1 promoter activity were found. Bosentan did not block those effects. CGS-26303 did not modify prepro-ET-1 expression. CGS-26303 and big ET-1 induced the same effects in human endothelial cells, at lower doses. Conclusions: These results suggest that the accumulation of big ET-1 is responsible for the effects of CGS-26303 on ECE-1 and they did not depend on NEP blockade. Changes in ECE-1 protein after the administration of CGS-26303 could lead to a decreased response in long-term treatments. PMID:17643133

Big Five Personality Traits and Eating Attitudes in Intensively Training Dancers: The Mediating Role of Internalized Thinness Norms.

PubMed

Scoffier-Mériaux, Stéphanie; Falzon, Charlène; Lewton-Brain, Peter; Filaire, Edith; d'Arripe-Longueville, Fabienne

2015-09-01

Dancers are at high risk of developing disordered eating attitudes, notably because of internalized thinness norms. Although the big five personality traits have been shown to be associated with eating attitudes in daily life, in dancers where eating issues and thinness norms internalization could be salient little is known about these associations and the role of the internalization of thinness norms in this relationship. The main objectives of this study were thus to examine the relationships between the personality traits defined in the big five model and the self-regulation of eating attitudes, and to assess the role of internalized thinness norms in this association. The study included 180 intensively training dancers with an average age of 15.6 years (SD = 2.8). Dancers completed questionnaires measuring the big five personality traits, internalization of thinness norms and self-regulation of eating attitudes in sport. Bootstrapped mediation analyses showed that neuroticism was negatively associated with self-regulation of eating attitudes, both directly and indirectly through the mediating role of internalized thinness norms. This study suggested that: (a) neuroticism is a vulnerability factor for self-regulation of eating attitudes in dancers, as already evidenced in the general population, and (b) the internalization of thinness norms is a pathway through which neuroticism affects self-regulation of eating attitudes. The big five model is therefore partially related to the internalization of thinness norms and eating attitudes in dancers. Key pointsThe big five model relates to the internalization of thinness norms and eating attitudes in dancers.Neuroticism is negatively related to the self-regulation of eating attitudes.The internalization of thinness norms is correlated to the relationship between neuroticism and self-regulation of eating attitudes.

Big Five Personality Traits and Eating Attitudes in Intensively Training Dancers: The Mediating Role of Internalized Thinness Norms

PubMed Central

Scoffier-Mériaux, Stéphanie; Falzon, Charlène; Lewton-Brain, Peter; Filaire, Edith; d’Arripe-Longueville, Fabienne

2015-01-01

Dancers are at high risk of developing disordered eating attitudes, notably because of internalized thinness norms. Although the big five personality traits have been shown to be associated with eating attitudes in daily life, in dancers where eating issues and thinness norms internalization could be salient little is known about these associations and the role of the internalization of thinness norms in this relationship. The main objectives of this study were thus to examine the relationships between the personality traits defined in the big five model and the self-regulation of eating attitudes, and to assess the role of internalized thinness norms in this association. The study included 180 intensively training dancers with an average age of 15.6 years (SD = 2.8). Dancers completed questionnaires measuring the big five personality traits, internalization of thinness norms and self-regulation of eating attitudes in sport. Bootstrapped mediation analyses showed that neuroticism was negatively associated with self-regulation of eating attitudes, both directly and indirectly through the mediating role of internalized thinness norms. This study suggested that: (a) neuroticism is a vulnerability factor for self-regulation of eating attitudes in dancers, as already evidenced in the general population, and (b) the internalization of thinness norms is a pathway through which neuroticism affects self-regulation of eating attitudes. The big five model is therefore partially related to the internalization of thinness norms and eating attitudes in dancers. Key points The big five model relates to the internalization of thinness norms and eating attitudes in dancers. Neuroticism is negatively related to the self-regulation of eating attitudes. The internalization of thinness norms is correlated to the relationship between neuroticism and self-regulation of eating attitudes PMID:26336350

Implementation of a Big Data Accessing and Processing Platform for Medical Records in Cloud.

PubMed

Yang, Chao-Tung; Liu, Jung-Chun; Chen, Shuo-Tsung; Lu, Hsin-Wen

2017-08-18

Big Data analysis has become a key factor of being innovative and competitive. Along with population growth worldwide and the trend aging of population in developed countries, the rate of the national medical care usage has been increasing. Due to the fact that individual medical data are usually scattered in different institutions and their data formats are varied, to integrate those data that continue increasing is challenging. In order to have scalable load capacity for these data platforms, we must build them in good platform architecture. Some issues must be considered in order to use the cloud computing to quickly integrate big medical data into database for easy analyzing, searching, and filtering big data to obtain valuable information.This work builds a cloud storage system with HBase of Hadoop for storing and analyzing big data of medical records and improves the performance of importing data into database. The data of medical records are stored in HBase database platform for big data analysis. This system performs distributed computing on medical records data processing through Hadoop MapReduce programming, and to provide functions, including keyword search, data filtering, and basic statistics for HBase database. This system uses the Put with the single-threaded method and the CompleteBulkload mechanism to import medical data. From the experimental results, we find that when the file size is less than 300MB, the Put with single-threaded method is used and when the file size is larger than 300MB, the CompleteBulkload mechanism is used to improve the performance of data import into database. This system provides a web interface that allows users to search data, filter out meaningful information through the web, and analyze and convert data in suitable forms that will be helpful for medical staff and institutions.

Satellite Image-based Estimates of Snow Water Equivalence in Restored Ponderosa Pine Forests in Northern Arizona

NASA Astrophysics Data System (ADS)

Sankey, T.; Springer, A. E.; O'Donnell, F. C.; Donald, J.; McVay, J.; Masek Lopez, S.

2014-12-01

The U.S. Forest Service plans to conduct forest restoration treatments through the Four Forest Restoration Initiative (4FRI) on hundreds of thousands of acres of ponderosa pine forest in northern Arizona over the next 20 years with the goals of reducing wildfire hazard and improving forest health. The 4FRI's key objective is to thin and burn the forests to create within-stand openings that "promote snowpack accumulation and retention which benefit groundwater recharge and watershed processes at the fine (1 to 10 acres) scale". However, little is known about how these openings created by restoration treatments affect snow water equivalence (SWE) and soil moisture, which are key parts of the water balance that greatly influence water availability for healthy trees and for downstream water users in the Sonoran Desert. We have examined forest canopy cover by calculating a Normalized Difference Vegetation Index (NDVI), a key indicator of green vegetation cover, using Landsat satellite data. We have then compared NDVI between treatments at our study sites in northern Arizona and have found statistically significant differences in tree canopy cover between treatments. The control units have significantly greater forest canopy cover than the treated units. The thinned units also have significantly greater tree canopy cover than the thin-and-burn units. Winter season Landsat images have also been analyzed to calculate Normalized Difference Snow Index (NDSI), a key indicator of snow water equivalence and snow accumulation at the treated and untreated forests. The NDSI values from these dates are examined to determine if snow accumulation and snow water equivalence vary between treatments at our study sites. NDSI is significantly greater at the treated units than the control units. In particular, the thinned forest units have significantly greater snow cover than the control units. Our results indicate that forest restoration treatments result in increased snow pack accumulation and this increase can be efficiently estimated at a landscape scale using satellite data.

Performance Analysis Tool for HPC and Big Data Applications on Scientific Clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoo, Wucherl; Koo, Michelle; Cao, Yu

Big data is prevalent in HPC computing. Many HPC projects rely on complex workflows to analyze terabytes or petabytes of data. These workflows often require running over thousands of CPU cores and performing simultaneous data accesses, data movements, and computation. It is challenging to analyze the performance involving terabytes or petabytes of workflow data or measurement data of the executions, from complex workflows over a large number of nodes and multiple parallel task executions. To help identify performance bottlenecks or debug the performance issues in large-scale scientific applications and scientific clusters, we have developed a performance analysis framework, using state-ofthe-more » art open-source big data processing tools. Our tool can ingest system logs and application performance measurements to extract key performance features, and apply the most sophisticated statistical tools and data mining methods on the performance data. It utilizes an efficient data processing engine to allow users to interactively analyze a large amount of different types of logs and measurements. To illustrate the functionality of the big data analysis framework, we conduct case studies on the workflows from an astronomy project known as the Palomar Transient Factory (PTF) and the job logs from the genome analysis scientific cluster. Our study processed many terabytes of system logs and application performance measurements collected on the HPC systems at NERSC. The implementation of our tool is generic enough to be used for analyzing the performance of other HPC systems and Big Data workows.« less

7 CFR 160.91 - Meaning of words “pine” and “pine tree.”

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 3 2010-01-01 2010-01-01 false Meaning of words âpineâ and âpine tree.â 160.91...” and “pine tree.” The words “pine” or “pine tree,” when used to designate the source of spirits of..., growing trees, the source of gum spirits of turpentine. ...

Development and assessment of 30-meter pine density maps for landscape-level modeling of mountain pine beetle dynamics

Treesearch

Benjamin A. Crabb; James A. Powell; Barbara J. Bentz

2012-01-01

Forecasting spatial patterns of mountain pine beetle (MPB) population success requires spatially explicit information on host pine distribution. We developed a means of producing spatially explicit datasets of pine density at 30-m resolution using existing geospatial datasets of vegetation composition and structure. Because our ultimate goal is to model MPB population...

7 CFR 160.91 - Meaning of words “pine” and “pine tree.”

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 3 2011-01-01 2011-01-01 false Meaning of words âpineâ and âpine tree.â 160.91...” and “pine tree.” The words “pine” or “pine tree,” when used to designate the source of spirits of..., growing trees, the source of gum spirits of turpentine. ...

7 CFR 160.91 - Meaning of words “pine” and “pine tree.”

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 3 2012-01-01 2012-01-01 false Meaning of words âpineâ and âpine tree.â 160.91...” and “pine tree.” The words “pine” or “pine tree,” when used to designate the source of spirits of..., growing trees, the source of gum spirits of turpentine. ...

7 CFR 160.91 - Meaning of words “pine” and “pine tree.”

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 3 2014-01-01 2014-01-01 false Meaning of words âpineâ and âpine tree.â 160.91...” and “pine tree.” The words “pine” or “pine tree,” when used to designate the source of spirits of..., growing trees, the source of gum spirits of turpentine. ...

7 CFR 160.91 - Meaning of words “pine” and “pine tree.”

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 3 2013-01-01 2013-01-01 false Meaning of words âpineâ and âpine tree.â 160.91...” and “pine tree.” The words “pine” or “pine tree,” when used to designate the source of spirits of..., growing trees, the source of gum spirits of turpentine. ...

Species composition influences management outcomes following mountain pine beetle in lodgepole pine-dominated forests

Treesearch

Kristen Pelz; C. C. Rhoades; R. M. Hubbard; M. A. Battaglia; F. W. Smith

2015-01-01

Mountain pine beetle outbreaks have killed lodgepole pine on more than one million hectares of Colorado and southern Wyoming forest during the last decade and have prompted harvest operations throughout the region. In northern Colorado, lodgepole pine commonly occurs in mixed stands with subalpine fir, Engelmann spruce, and aspen. Variation in tree species composition...

Site preparation as an aid to sugar pine regeneration

Treesearch

H.A. Fowells

1944-01-01

On many thousands of acres of cut-over timber lands in California, brush of various species has gained such control of the soil that the success of natural reproduction is problematical. This condition is particularly serious in the high site quality sugar pine-white fir and sugar pine-ponderosa pine types, where the maintenance of sugar pine in the stands is a...

Limber Pine and White Pine Blister Rust Monitoring and Assessment Guide for Rocky Mountain National Park

Treesearch

Christy M. Cleaver; Kelly S. Burns; Anna W. Schoettle

2017-01-01

Limber pine, designated by Rocky Mountain National Park (RMNP) as a Species of Management Concern, is a keystone species that maintains ecosystem structure, function, and biodiversity. Limber pine is declining in the park due to the interacting effects of recent severe droughts and the climate-exasperated mountain pine beetle (Dendroctonus ponderosae) outbreak, and is...

The climatic distribution of blister rust on white pine in Wisconsin

Treesearch

E.P. Van Arsdel; A.J. Riker; T.F. Kouba; V.E. Suomi; R.A. Bryson

1961-01-01

White pine blister rust limits the reproduction of white pine in many areas by killing young trees. In other extensive areas unjustified fear of the disease limits white pine planting. An ability to differentiate the sites on which white pine blister rust (caused by Cronartium ribicola Fischer) might be serious from those on which the disease might...

Fertilizer responses of longleaf pine trees within a loblolly pine plantation: separating direct effects from competition effects

Treesearch

Peter H Anderson; Kurt H. Johnsen

2009-01-01

Evidence is mixed on how well longleaf pine (Pinus palustris Mill.) responds to increased soil nitrogen via fertilization. We examined growth and physiological responses of volunteer longleaf pine trees within an intensive loblolly pine (Pinus taeda L.) fertilization experiment. Fertilizer was applied annually following thinning at age 8 years (late 1992) at rates...

Borax Stump Treatment for Control of Annosus Root Disease in the Eastside Pine Type Forests of Northeastern California

Treesearch

John T. Kliejunas

1989-01-01

A historical perspective and description of recent studies on the use of borax to treat pine stumps against infection by Heterobasidion annosum in eastside pine stands of northeastern California are presented. The studies indicate that boraxing of pines in eastside pine stands is an effective means of preventing annosus infection. Data and...

Geographic variation in shortleaf pine (Pinus echinata Mill.) - cortical monoterpenes

Treesearch

R.C. Schmidtling; J.H. Myszewski; C.E. McDaniel

2005-01-01

Cortical monoterpenes were assayed in bud tissue from 16 Southwide Southern Pine Seed Source Study (SSPSS) sources and from 6 seed orchard sources fiom across the natural range of the species, to examine geogaphic variation in shortleaf pine. Spruce pine and pond pine were also sampled. The results show geographic differences in all of the major terpenes. There was no...

Selection for resistance to white pine blister rust affects the abiotic stress tolerances of limber pine

Treesearch

Patrick J. Vogan; Anna W. Schoettle

2015-01-01

Limber pine (Pinus flexilis) mortality is increasing across the West as a result of the combined stresses of white pine blister rust (Cronartium ribicola; WPBR), mountain pine beetle (Dendroctonus ponderosae), and dwarf mistletoe (Arceuthobium cyanocarpum) in a changing climate. With the continued spread of WPBR, extensive mortality will continue with strong selection...