Analysis of combined data sets yields trend estimates for vulnerable spruce-fir birds in northern United States

Treesearch

Joel Ralston; David I. King; William V. DeLuca; Gerald J. Niemi; Michale J. Glennon; Judith C. Scarl; J. Daniel Lambert

2015-01-01

Continental-scale monitoring programs with standardized survey protocols play an important role in conservation science by identifying species in decline and prioritizing conservation action. However, rare, inaccessible, or spatially fragmented communities may be underrepresented in continental-scale surveys. Data on these communities often come from decentralized,...

Protocol for monitoring forest-nesting birds in National Park Service parks

USGS Publications Warehouse

Dawson, Deanna K.; Efford, Murray G.

2013-01-01

These documents detail the protocol for monitoring forest-nesting birds in National Park Service parks in the National Capital Region Network (NCRN). In the first year of sampling, counts of birds should be made at 384 points on the NCRN spatially randomized grid, developed to sample terrestrial resources. Sampling should begin on or about May 20 and continue into early July; on each day the sampling period begins at sunrise and ends five hours later. Each point should be counted twice, once in the first half of the field season and once in the second half, with visits made by different observers, balancing the within-season coverage of points and their spatial coverage by observers, and allowing observer differences to be tested. Three observers, skilled in identifying birds of the region by sight and sound and with previous experience in conducting timed counts of birds, will be needed for this effort. Observers should be randomly assigned to ‘routes’ consisting of eight points, in close proximity and, ideally, in similar habitat, that can be covered in one morning. Counts are 10 minutes in length, subdivided into four 2.5-min intervals. Within each time interval, new birds (i.e., those not already detected) are recorded as within or beyond 50 m of the point, based on where first detected. Binomial distance methods are used to calculate annual estimates of density for species. The data are also amenable to estimation of abundance and detection probability via the removal method. Generalized linear models can be used to assess between-year changes in density estimates or unadjusted count data. This level of sampling is expected to be sufficient to detect a 50% decline in 10 years for approximately 50 bird species, including 14 of 19 species that are priorities for conservation efforts, if analyses are based on unadjusted count data, and for 30 species (6 priority species) if analyses are based on density estimates. The estimates of required sample sizes are based on the mean number of individuals detected per 10 minutes in available data from surveys in three NCRN parks. Once network-wide data from the first year of sampling are available, this and other aspects of the protocol should be re-assessed, and changes made as desired or necessary before the start of the second field season. Thereafter, changes should not be made to the field methods, and sampling should be conducted annually for at least ten years. NCRN staff should keep apprised of new analytical methods developed for analysis of point-count data.

Monitoring bird populations in small geographic areas

USGS Publications Warehouse

Dunn, Erica H.; Bart, J.; Collins, B.T.; Craig, B.; Dale, B.; Downes, C.M.; Francis, C.M.; Woodley, S.; Zorn, P.

2006-01-01

Numerous methods exist for monitoring bird populations, and there is a large literature describing them. There are few resources, however, that provide comprehensive advice on every step of organizing and carrying out a survey, from the early stages of planning to final use of the data. Even fewer resources are designed to meet the needs of a wide variety of potential users, from amateurs interested in change of bird life in a local study preserve to professionals testing hypotheses on the response of birds to habitat management, although much of the advice should be the same for every monitoring program. Whether survey objectives are very modest or rigorously scientific, samples must be sufficiently numerous and well distributed to provide meaningful results, and the survey should be well designed to ensure that the money and effort going into it are not wasted. This document is intended to be a complete resource for anyone planning to organize monitoring of noncolonial landbirds within a relatively small geographic area (e.g., from the size of a woodlot to a large park). The first of its two parts provides background explaining the importance of good study design and gives specific advice on all aspects of project planning and execution of high-quality data collection for the purpose of hypothesis testing. The second part is self-contained and nontechnical and describes complete plans for a site-specific checklist survey, suitable for addressing monitoring questions frequently asked by amateurs and for involvement of volunteers in data collection. Throughout are references to additional resources, from background literature to sources of existing survey protocols, analysis software, and tools for archiving data.

Occupancy modeling of ruffed grouse in the Black Hills National Forest

Treesearch

Christopher P. Hansen; Joshua J. Millspaugh; Mark A. Rumble

2011-01-01

Ruffed grouse (Bonasa umbellus) are a popular game bird and the management indicator species for quaking aspen (Populus tremuloides) in the Black Hills National Forest (BHNF), which requires development of a robust monitoring protocol to evaluate trends in ruffed grouse populations. We used roadside drumming surveys in spring 2007 and 2008 to estimate ruffed grouse...

Landbird Monitoring Protocol for National Parks in the North Coast and Cascades Network

USGS Publications Warehouse

Siegel, Rodney B.; Wilkerson, Robert L.; Jenkins, Kurt J.; Kuntz, Robert C.; Boetsch, John R.; Schaberl, James P.; Happe, Patricia J.

2007-01-01

This protocol narrative outlines the rationale, sampling design and methods for monitoring landbirds in the North Coast and Cascades Network (NCCN) during the breeding season. The NCCN, one of 32 networks of parks in the National Park System, comprises seven national park units in the Pacific Northwest, including three large, mountainous, natural area parks (Mount Rainier [MORA] and Olympic [OLYM] National Parks, North Cascades National Park Service Complex [NOCA]), and four small historic cultural parks (Ebey's Landing National Historical Reserve [EBLA], Lewis and Clark National Historical Park [LEWI], Fort Vancouver National Historical Park [FOVA], and San Juan Island National Historical Park [SAJH]). The protocol reflects decisions made by the NCCN avian monitoring group, which includes NPS representatives from each of the large parks in the Network as well as personnel from the U.S. Geological Survey Forest and Rangeland Ecosystem Science Center (USGS-FRESC) Olympic Field Station, and The Institute for Bird Populations, at meetings held between 2000 (Siegel and Kuntz, 2000) and 2005. The protocol narrative describes the monitoring program in relatively broad terms, and its structure and content adhere to the outline and recommendations developed by Oakley and others (2003) and adopted by NPS. Finer details of the methodology are addressed in a set of standard operating procedures (SOPs) that accompany the protocol narrative. We also provide appendixes containing additional supporting materials that do not clearly belong in either the protocol narrative or the standard operating procedures.

Phenology in the Western Alps: first results of the PhenoALP project

NASA Astrophysics Data System (ADS)

Cremonese, Edoardo; Tracol, Yann

2010-05-01

PHENOALP is a EU co-funded Interreg Project under the operational programme for cross-border cooperation "Italy-France (Alps-ALCOTRA)" 2007 - 2013, started in 2009, aiming to get a better understanding of phenological changes in the Alps and build a long term monitoring network. The results obtained after the first year of the project are mainly related to the definition of observation protocols and to the implementation of the observation networks. In particular, we focused on the comparison of different approaches for monitoring alpine grasslands phenology. We developed a new protocol for vegetative and reproductive phases of the seven most common plant growth life forms of alpine pastures: cyperaceae, poaceae (palatable and non palatable), evergreen and deciduous shrubs, forbs and leguminous. For each group quantitative and qualitative variables (e.g. leaves length, bud number, fruits number and phenophases) are monitored during the growing season. Study sites are located along an elevation gradient from 1560 to 2580 m asl and measurements are carried out on marked individuals in permanent plots. The other techniques used to monitor grassland phenology are: analysis of webcam images, weekly nadiral digital images, visual estimations of greening percentage, canopy structural measurements (i.e. height, fraction of absorbed photosynthetically active radiation, leaf are index, etc..) and high frequency radiometric measurements of vegetation indexes related to canopy structure. All methods are providing promising results and our goal is to define a protocol suitable for long term observation based on a reasonable trade-off between the quality and robustness of collected data and the heaviness of the observations. For animal phenology we are focusing on many animal taxa among birds, mammals, amphibians and insects. First results are coming from birds and amphibians. In the case of birds, observations of reproductive phenology of some common alpine species are done along altitudinal transects of artificial nest-boxes. Moreover a protocol for the monitoring of the reproductive phases of Rana temporaria has been defined and observations are done in some ponds along an elevation gradient. A third activity of the project aims to analyse the relations between the seasonal and interannual variability of plant phenology and productivity, assessed measuring CO2 fluxes. To achieve this goal, two eddy covariance towers have been installed in a larch forest (2150 m asl) and in an alpine grassland (2160 m asl) in sites where phenology is monitored by field observations and webcams. Associated with these activities, a great effort is made towards the involvement of educational institutions in the observations of the seasonal changes of alpine ecosystems. During 2010, five school complexes located in the Italian side of the Western Alps will be involved in the French monitoring network of phenology in the Alps: Phenoclim (http://www.crea.hautesavoie.net/eng/phenoclim/index.php).Italian project partners will train schools to start phenological observations.

Mortality monitoring design for utility-scale solar power facilities

USGS Publications Warehouse

Huso, Manuela; Dietsch, Thomas; Nicolai, Chris

2016-05-27

IntroductionSolar power represents an important and rapidly expanding component of the renewable energy portfolio of the United States (Lovich and Ennen, 2011; Hernandez and others, 2014). Understanding the impacts of renewable energy development on wildlife is a priority for the U.S. Fish and Wildlife Service (FWS) in compliance with Department of Interior Order No. 3285 (U.S. Department of the Interior, 2009) to “develop best management practices for renewable energy and transmission projects on the public lands to ensure the most environmentally responsible development and delivery of renewable energy.” Recent studies examining effects of renewable energy development on mortality of migratory birds have primarily focused on wind energy (California Energy Commission and California Department of Fish and Game, 2007), and in 2012 the FWS published guidance for addressing wildlife conservation concerns at all stages of land-based wind energy development (U.S. Fish and Wildlife Service, 2012). As yet, no similar guidelines exist for solar development, and no published studies have directly addressed the methodology needed to accurately estimate mortality of birds and bats at solar facilities. In the absence of such guidelines, ad hoc methodologies applied to solar energy projects may lead to estimates of wildlife mortality rates that are insufficiently accurate and precise to meaningfully inform conversations regarding unintended consequences of this energy source and management decisions to mitigate impacts. Although significant advances in monitoring protocols for wind facilities have been made in recent years, there remains a need to provide consistent guidance and study design to quantify mortality of bats, and resident and migrating birds at solar power facilities (Walston and others, 2015).In this document, we suggest methods for mortality monitoring at solar facilities that are based on current methods used at wind power facilities but adapted for the unique conditions encountered at solar facilities. In particular, unlike at wind-power facilities, the unimpeded access to almost all areas within the facilities, the typically flat terrain, and general absence of thick vegetation allow distance-sampling techniques (Buckland and others, 2001, 2004) to be exploited to advantage at industrial solar sites. These protocols build on the work of Nicolai and others (2011), and as our understanding and techniques for monitoring improve, the methods may be further modified to incorporate improvements in the future. We present case studies based on monitoring methods currently implemented at different utility-scale solar facilities to illustrate how distance-sampling techniques may improve overall detectability without substantially increasing costs. Every facility is unique, and the protocols presented may be adapted based on specific monitoring objectives and conditions at each site.We provide guidance for designing monitoring programs whose objective it is to estimate the total number of bird and bat fatalities occurring at a facility over an extended period of time. We address spatial variation in causes of mortality, as well as potential sources of imperfect detection, for example, animals falling in or moving to unsearched areas, carcasses removed by predators, and carcasses missed by searchers. We suggest methods to estimate and account for each source of imperfect detection. This document focuses on monitoring design only and does not discuss approaches for estimating mortality from collected data. The development of statistically sound estimators relevant to the solar context is a current topic of research, although there are already strong foundations for estimation with distance-sampling methods in similar open, arid environments (Anderson and others, 2001; Freilich and others, 2005). Nonetheless, if protocols described in this document are followed, the resulting data will be adequate and sufficient for estimating mortality using newly formulated estimators.

Movements of radio-marked California Ridgway's rails during monitoring surveys: Implications for population monitoring

USGS Publications Warehouse

Bui, Thuy-Vy D.; Takekawa, John Y.; Overton, Cory T.; Schultz, Emily R.; Hull, Joshua M.; Casazza, Michael L.

2015-01-01

The California Ridgway's rail Rallus obsoletus obsoletus (hereafter California rail) is a secretive marsh bird endemic to tidal marshes in the San Francisco Bay (hereafter bay) of California. The California rail has undergone significant range contraction and population declines due to a variety of factors, including predation and the degradation and loss of habitat. Call-count surveys, which include call playbacks, based on the standardized North American marsh bird monitoring protocol have been conducted throughout the bay since 2005 to monitor population size and distribution of the California rail. However, call-count surveys are difficult to evaluate for efficacy or accuracy. To measure the accuracy of call-count surveys and investigate whether radio-marked California rails moved in response to call-count surveys, we compared locations of radio-marked California rails collected at frequent intervals (15 min) to California rail detections recorded during call-count surveys conducted over the same time periods. Overall, 60% of radio-marked California rails within 200 m of observers were not detected during call-count surveys. Movements of radio-marked California rails showed no directional bias (P = 0.92) irrespective of whether or not playbacks of five marsh bird species (including the California rail) were broadcast from listening stations. Our findings suggest that playbacks of rail vocalizations do not consistently influence California rail movements during surveys. However, call-count surveys may underestimate California rail presence; therefore, caution should be used when relating raw numbers of call-count detections to population abundance.

Bird biodiversity assessments in temperate forest: the value of point count versus acoustic monitoring protocols.

PubMed

Klingbeil, Brian T; Willig, Michael R

2015-01-01

Effective monitoring programs for biodiversity are needed to assess trends in biodiversity and evaluate the consequences of management. This is particularly true for birds and faunas that occupy interior forest and other areas of low human population density, as these are frequently under-sampled compared to other habitats. For birds, Autonomous Recording Units (ARUs) have been proposed as a supplement or alternative to point counts made by human observers to enhance monitoring efforts. We employed two strategies (i.e., simultaneous-collection and same-season) to compare point count and ARU methods for quantifying species richness and composition of birds in temperate interior forests. The simultaneous-collection strategy compares surveys by ARUs and point counts, with methods matched in time, location, and survey duration such that the person and machine simultaneously collect data. The same-season strategy compares surveys from ARUs and point counts conducted at the same locations throughout the breeding season, but methods differ in the number, duration, and frequency of surveys. This second strategy more closely follows the ways in which monitoring programs are likely to be implemented. Site-specific estimates of richness (but not species composition) differed between methods; however, the nature of the relationship was dependent on the assessment strategy. Estimates of richness from point counts were greater than estimates from ARUs in the simultaneous-collection strategy. Woodpeckers in particular, were less frequently identified from ARUs than point counts with this strategy. Conversely, estimates of richness were lower from point counts than ARUs in the same-season strategy. Moreover, in the same-season strategy, ARUs detected the occurrence of passerines at a higher frequency than did point counts. Differences between ARU and point count methods were only detected in site-level comparisons. Importantly, both methods provide similar estimates of species richness and composition for the region. Consequently, if single visits to sites or short-term monitoring are the goal, point counts will likely perform better than ARUs, especially if species are rare or vocalize infrequently. However, if seasonal or annual monitoring of sites is the goal, ARUs offer a viable alternative to standard point-count methods, especially in the context of large-scale or long-term monitoring of temperate forest birds.

Studying wind energy/bird interactions: a guidance document. Metrics and methods for determining or monitoring potential impacts on birds at existing and proposed wind energy sites

USGS Publications Warehouse

Anderson, R.; Morrison, M.; Sinclair, K.; Strickland, D.; Davis, H.; Kendall, W.

1999-01-01

In the 1980s little was known about the potential environmental effects associated with large scale wind energy development. Although wind turbines have been used in farming and remote location applications throughout this country for centuries, impacts on birds resulting from these dispersed turbines had not been reported. Thus early wind energy developments were planned, permitted, constructed, and operated with little consideration for the potential effects on birds. In the ensuing years wind plant impacts on birds became a source of concern among a number of stakeholder groups. Based on the studies that have been done to date, significant levels of bird fatalities have been identified at only one major commercial wind energy development in the United States. Research on wind energy/bird interactions has spanned such a wide variety of protocols and vastly different levels of study effort that it is difficult to make comparisons among study findings. As a result there continues to be interest, confusion, and concern over wind energy development's potential impacts on birds. Some hypothesize that technology changes, such as less dense wind farms with larger, slower-moving turbines, will decrease the number of bird fatalities from wind turbines. Others hypothesize that, because the tip speed may be the same or faster, new turbines will not result in decreased bird fatalities but may actually increase bird impacts. Statistically significant data sets from scientifically rigorous studies will be required before either hypothesis can be tested.

Vascular Plant and Vertebrate Inventory of Tonto National Monument

USGS Publications Warehouse

Albrecht, Eric W.; Powell, Brian F.; Halvorson, William L.; Schmidt, Cecilia A.

2007-01-01

This report summarizes the results of the first biological inventory of plants and vertebrates at Tonto National Monument (NM). From 2001 to 2003, we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at Tonto NM to record species presence. We focused most of our efforts along the Cave Springs riparian area, but surveyed other areas as well. We recorded 149 species in the riparian area, and 369 species overall in the monument, including 65 plant species and four bird species that were previously unrecorded for the monument. We recorded 78 plant species in the riparian area that previous studies had not indicated were present there. Several species of each taxonomic group were found only in the riparian area, suggesting that because of their concentration in this small area these populations are vulnerable to disturbance and may be of management concern. Four of the bird species that we recorded (Bell's vireo, yellow warbler, summer tanager, and Abert's towhee) have been identified as riparian 'obligate' species by other sources. Bird species that are obligated to riparian areas are targets of conservation concern due to widespread degradation of riparian areas in the desert southwest over the last century. The flora and fauna of the riparian area would benefit from continued limited public access. The dependence of the riparian area on the spring and surface flow suggests monitoring of this resource per se would benefit management of the riparian area's flora and fauna as well. The monument would benefit from incorporating monitoring protocols developed by the Sonoran Desert Network Inventory and Monitoring program rather than initiating a separate program for the riparian area. Park managers can encourage the Inventory and Monitoring program to address the unique monitoring challenges presented by small spatial areas such as this riparian area, and can request specific monitoring recommendations. We suggest that repeat inventories for vertebrates, and census (rather than sampling) of perennial vegetation may be the most effective long-term monitoring strategies in the riparian area to verify species persistence through time in this unique and spatially limited environment.

Seasonal variation of infestation by ectoparasitic chigger mite larvae (Acarina: Trombiculidae) on resident and migratory birds in coffee agroecosystems of Chiapas, Mexico.

PubMed

Dietsch, Thomas V

2005-12-01

Parasitism is not well documented for birds found in tropical habitats. Long-distance migratory birds may face additional risks to an already hazardous journey when infected. This study explores the ecology of an ectoparasite infestation in Chiapas, Mexico. During a mist-netting project in 2 different coffee management systems, chigger mites (Acarina: Trombiculidae), ectoparasitic during the larval stage, were found on both resident and migratory birds. Using a rapid assessment protocol, it was observed that 17 of 26 species of long-distance migrants and 33 of 71 resident species had at least 1 infested individual. Infestation prevalences were unexpectedly high on some long-distance migrants, as high as 0.73 for Swainson's thrush (Catharus ustulatus), a value on par with heavily infested resident species. Prevalence was highest during winter sampling: 0.18 overall, 0.16 of migrants, and 0.23 of residents. Prevalence was 0.14 for resident birds during the summer breeding season. Mean abundance and mean intensity of infestation are reported for 97 species captured and inspected during the course of this study. In this region, chigger mite larvae are relatively common on birds and their abundance varies seasonally. High prevalence for some migratory birds suggests that more research and monitoring of ectoparasites are needed, especially in light of emerging diseases.

Development of an enzyme-linked immunosorbent assay for the serological detection of exposure of poultry in New Zealand to Erysipelothrix rhusiopathiae and their serological response to vaccination.

PubMed

Kurian, A; Neumann, E J; Hall, W F; Christensen, N

2012-03-01

To modify and validate an existing swine erysipelas ELISA for use with poultry serum and to assess the safety of a swine erysipelas vaccine for use in New Zealand layer birds. An existing swine erysipelas ELISA was modified for use in domestic poultry and was validated using sera from birds injected with either 2 mL of a commercially available killed swine erysipelas vaccine (low-dose; n=12 birds), 4 mL of vaccine (high-dose; n=11 birds), or 2 mL saline (control; n=11 birds) on Day 0 and again on Day 21. Blood samples were collected on Days 0, 21, 42, and 63, and safety of the vaccine for use in layer birds was determined by assessing cloacal temperature and injection site reactions in birds at 0, 4, 24, 48, 72 and 96 h post-vaccination. The ELISA that was developed had a diagnostic sensitivity and specificity of 93% and 98%, respectively, after being optimised for a positive cut-off at an optical density (OD) ≥ 1.50 read at 450-nm wavelength. OD readings were higher on Days 21, 42, and 63 than Day 0 in both the low-dose and high-dose groups (p<0.05), and differed amongst the three groups on Days 21, 42, and 63 (p<0.05), suggesting that vaccination using either dose induced detectable levels of antibody, even after a single dose. In addition, the high-dose protocol induced higher levels of antibody production than the low-dose protocol. No local or systemic reactions to the vaccine were observed and cloacal temperatures remained in the normal biological range after vaccination. The ELISA that was developed had satisfactory diagnostic performance characteristics and the vaccine appeared to be safe for use in layer birds. However, the study design did not permit an assessment of the vaccine's efficacy to protect birds from clinical erysipelas. A diagnostic ELISA has been developed for determining the exposure of layer birds to E. rhusiopathiae. The test will be useful for monitoring flock-level erysipelas, response to vaccination, and in epidemiological studies designed to identify risk factors for exposure to the disease.

A Comparison of ectoparasite infestation by chigger mite larvae (Acarina: Trombiculidae) on resident and migratory birds in Chiapas, Mexico illustrating a rapid visual assessment protocol

Treesearch

Thomas V. Dietsch

2005-01-01

This study presents a protocol developed to rapidly assess ectoparasite prevalence and intensity. Using this protocol during a mist-netting project in two different coffee agroecosystems in Chiapas, Mexico, data were collected on ectoparasitic chigger mite larvae (Acarina: Trombiculidae) found on resident and migratory birds. Surprisingly high infestation rates were...

Plastic ingestion in marine-associated bird species from the eastern North Pacific.

PubMed

Avery-Gomm, S; Provencher, J F; Morgan, K H; Bertram, D F

2013-07-15

In addition to monitoring trends in plastic pollution, multi-species surveys are needed to fully understand the pervasiveness of plastic ingestion. We examined the stomach contents of 20 bird species collected from the coastal waters of the eastern North Pacific, a region known to have high levels of plastic pollution. We observed no evidence of plastic ingestion in Rhinoceros Auklet, Marbled Murrelet, Ancient Murrelet or Pigeon Guillemot, and low levels in Common Murre (2.7% incidence rate). Small sample sizes limit our ability to draw conclusions about population level trends for the remaining fifteen species, though evidence of plastic ingestion was found in Glaucous-Winged Gull and Sooty Shearwater. Documenting levels of plastic ingestion in a wide array of species is necessary to gain a comprehensive understanding about the impacts of plastic pollution. We propose that those working with bird carcasses follow standard protocols to assess the levels of plastic ingestion whenever possible. Copyright © 2013 Elsevier Ltd. All rights reserved.

Power to detect trends in abundance of secretive marsh birds: effects of species traits and sampling effort

USGS Publications Warehouse

Steidl, Robert J.; Conway, Courtney J.; Litt, Andrea R.

2013-01-01

Standardized protocols for surveying secretive marsh birds have been implemented across North America, but the efficacy of surveys to detect population trends has not been evaluated. We used survey data collected from populations of marsh birds across North America and simulations to explore how characteristics of bird populations (proportion of survey stations occupied, abundance at occupied stations, and detection probability) and aspects of sampling effort (numbers of survey routes, stations/route, and surveys/station/year) affect statistical power to detect trends in abundance of marsh bird populations. In general, the proportion of survey stations along a route occupied by a species had a greater relative effect on power to detect trends than did the number of birds detected per survey at occupied stations. Uncertainty introduced by imperfect detection during surveys reduced power to detect trends considerably, but across the range of detection probabilities for most species of marsh birds, variation in detection probability had only a minor influence on power. For species that occupy a relatively high proportion of survey stations (0.20), have relatively high abundances at occupied stations (2.0 birds/station), and have high detection probability (0.50), ≥40 routes with 10 survey stations per route surveyed 3 times per year would provide an 80% chance of detecting a 3% annual decrease in abundance after 20 years of surveys. Under the same assumptions but for species that are less common, ≥100 routes would be needed to achieve the same power. Our results can help inform the design of programs to monitor trends in abundance of marsh bird populations, especially with regards to the amount of sampling effort necessary to meet programmatic goals.

An Overview of the Ontario Forest Bird Monitoring Program in Canada

Treesearch

Daniel A. Welsh

1995-01-01

In 1987, the Canadian Wildlife Service (Ontario Region) initiated a program to inventory and monitor trends in forest birds. The Forest Bird Monitoring Program (FBMP) was designed to describe changes in numbers over time for all forest songbirds, to develop a habitat-specific baseline inventory of forest birds (species composition and relative abundance), and to...

USDA Forest Service goals and programs for monitoring neotropical migratory birds

Treesearch

Patricia Manley

1993-01-01

The USDA Forest Service (USFS) developed goals, objectives, and guidelines for monitoring neotropical migratory birds (NTMB) on National Forest System lands in response to the Neotropical Migratory Bird Conservation Program Partners in Flight. A USFS task group developed a hierarchical monitoring framework designed to define priorities for type of monitoring data....

A simplified field protocol for genetic sampling of birds using buccal swabs

USGS Publications Warehouse

Vilstrup, Julia T.; Mullins, Thomas D.; Miller, Mark P.; McDearman, Will; Walters, Jeffrey R.; Haig, Susan M.

2018-01-01

DNA sampling is an essential prerequisite for conducting population genetic studies. For many years, blood sampling has been the preferred method for obtaining DNA in birds because of their nucleated red blood cells. Nonetheless, use of buccal swabs has been gaining favor because they are less invasive yet still yield adequate amounts of DNA for amplifying mitochondrial and nuclear markers; however, buccal swab protocols often include steps (e.g., extended air-drying and storage under frozen conditions) not easily adapted to field settings. Furthermore, commercial extraction kits and swabs for buccal sampling can be expensive for large population studies. We therefore developed an efficient, cost-effective, and field-friendly protocol for sampling wild birds after comparing DNA yield among 3 inexpensive buccal swab types (2 with foam tips and 1 with a cotton tip). Extraction and amplification success was high (100% and 97.2% respectively) using inexpensive generic swabs. We found foam-tipped swabs provided higher DNA yields than cotton-tipped swabs. We further determined that omitting a drying step and storing swabs in Longmire buffer increased efficiency in the field while still yielding sufficient amounts of DNA for detailed population genetic studies using mitochondrial and nuclear markers. This new field protocol allows time- and cost-effective DNA sampling of juveniles or small-bodied birds for which drawing blood may cause excessive stress to birds and technicians alike.

The first 50 years of the North American Breeding Bird Survey

USGS Publications Warehouse

Sauer, John; Ziolkowski, David; Pardieck, Keith L.; Smith, Adam C.; Hudson, Marie-Anne R.; Rodriguez, Vicente; Berlanga, Humberto; Niven, Daniel; Link, William

2017-01-01

The vision of Chandler (Chan) S. Robbins for a continental-scale omnibus survey of breeding birds led to the development of the North American Breeding Bird Survey (BBS). Chan was uniquely suited to develop the BBS. His position as a government scientist had given him experience with designing and implementing continental-scale surveys, his research background made him an effective advocate of the need for a survey to monitor pesticide effects on birds, and his prominence in the birding community gave him connections to infrastructure—a network of qualified volunteer birders who could conduct roadside surveys with standardized point counts. Having started in the eastern United States and the Atlantic provinces of Canada in 1966, the BBS now provides population change information for ∼546 species in the continental United States and Canada, and recently initiated routes in Mexico promise to greatly expand the areas and species covered by the survey. Although survey protocols have remained unchanged for 50 years, the BBS remains relevant in a changing world. Several papers that follow in this Special Section of The Condor: Ornithological Advances review how the BBS has been applied to conservation assessments, especially in combination with other large-scale survey data. A critical feature of the BBS program is an active research program into field and analytical methods to enhance the quality of the count data and to control for factors that influence detectability. Papers in the Special Section also present advances in BBS analyses that improve the utility of this expanding and sometimes controversial survey. In this Perspective, we introduce the Special Section by reviewing the history of the BBS, describing current analyses, and providing summary trend results for all species, highlighting 3 groups of conservation concern: grassland-breeding birds, aridland-breeding birds, and aerial insectivorous birds.

Generation of gene edited birds in one generation using sperm transfection assisted gene editing (STAGE).

PubMed

Cooper, Caitlin A; Challagulla, Arjun; Jenkins, Kristie A; Wise, Terry G; O'Neil, Terri E; Morris, Kirsten R; Tizard, Mark L; Doran, Timothy J

2017-06-01

Generating transgenic and gene edited mammals involves in vitro manipulation of oocytes or single cell embryos. Due to the comparative inaccessibility of avian oocytes and single cell embryos, novel protocols have been developed to produce transgenic and gene edited birds. While these protocols are relatively efficient, they involve two generation intervals before reaching complete somatic and germline expressing transgenic or gene edited birds. Most of this work has been done with chickens, and many protocols require in vitro culturing of primordial germ cells (PGCs). However, for many other bird species no methodology for long term culture of PGCs exists. Developing methodologies to produce germline transgenic or gene edited birds in the first generation would save significant amounts of time and resource. Furthermore, developing protocols that can be readily adapted to a wide variety of avian species would open up new research opportunities. Here we report a method using sperm as a delivery mechanism for gene editing vectors which we call sperm transfection assisted gene editing (STAGE). We have successfully used this method to generate GFP knockout embryos and chickens, as well as generate embryos with mutations in the doublesex and mab-3 related transcription factor 1 (DMRT1) gene using the CRISPR/Cas9 system. The efficiency of the method varies from as low as 0% to as high as 26% with multiple factors such as CRISPR guide efficiency and mRNA stability likely impacting the outcome. This straightforward methodology could simplify gene editing in many bird species including those for which no methodology currently exists.

Flexible risk metrics for identifying and monitoring conservation-priority species

USGS Publications Warehouse

Stanton, Jessica C.; Semmens, Brice X.; McKann, Patrick C.; Will, Tom; Thogmartin, Wayne E.

2016-01-01

Region-specific conservation programs should have objective, reliable metrics for species prioritization and progress evaluation that are customizable to the goals of a program, easy to comprehend and communicate, and standardized across time. Regional programs may have vastly different goals, spatial coverage, or management agendas, and one-size-fits-all schemes may not always be the best approach. We propose a quantitative and objective framework for generating metrics for prioritizing species that is straightforward to implement and update, customizable to different spatial resolutions, and based on readily available time-series data. This framework is also well-suited to handling missing-data and observer error. We demonstrate this approach using North American Breeding Bird Survey (NABBS) data to identify conservation priority species from a list of over 300 landbirds across 33 bird conservation regions (BCRs). To highlight the flexibility of the framework for different management goals and timeframes we calculate two different metrics. The first identifies species that may be inadequately monitored by NABBS protocols in the near future (TMT, time to monitoring threshold), and the other identifies species likely to decline significantly in the near future based on recent trends (TPD, time to percent decline). Within the individual BCRs we found up to 45% (mean 28%) of the species analyzed had overall declining population trajectories, which could result in up to 37 species declining below a minimum NABBS monitoring threshold in at least one currently occupied BCR within the next 50 years. Additionally, up to 26% (mean 8%) of the species analyzed within the individual BCRs may decline by 30% within the next decade. Conservation workers interested in conserving avian diversity and abundance within these BCRs can use these metrics to plan alternative monitoring schemes or highlight the urgency of those populations experiencing the fastest declines. However, this framework is adaptable to many taxa besides birds where abundance time-series data are available.

Use of standardized visual assessments of riparian and stream condition to manage riparian bird habitat in eastern Oregon.

PubMed

Cooke, Hilary A; Zack, Steve

2009-07-01

The importance of riparian vegetation to support stream function and provide riparian bird habitat in semiarid landscapes suggests that standardized assessment tools that include vegetation criteria to evaluate stream health could also be used to assess habitat conditions for riparian-dependent birds. We first evaluated the ability of two visual assessments of woody vegetation in the riparian zone (corridor width and height) to describe variation in the obligate riparian bird ensemble along 19 streams in eastern Oregon. Overall species richness and the abundances of three species all correlated significantly with both, but width was more important than height. We then examined the utility of the riparian zone criteria in three standardized and commonly used rapid visual riparian assessment protocols--the USDI BLM Proper Functioning Condition (PFC) assessment, the USDA NRCS Stream Visual Assessment Protocol (SVAP), and the U.S. EPA Habitat Assessment Field Data Sheet (HAFDS)--to assess potential riparian bird habitat. Based on the degree of correlation of bird species richness with assessment ratings, we found that PFC does not assess obligate riparian bird habitat condition, SVAP provides a coarse estimate, and HAFDS provides the best assessment. We recommend quantitative measures of woody vegetation for all assessments and that all protocols incorporate woody vegetation height. Given that rapid assessments may be the only source of information for thousands of kilometers of streams in the western United States, incorporating simple vegetation measurements is a critical step in evaluating the status of riparian bird habitat and provides a tool for tracking changes in vegetation condition resulting from management decisions.

Guidelines for designing short-term bird monitoring projects

Treesearch

Jonathan Bart

2005-01-01

The Coordinated Bird Monitoring Program (Bart and Ralph, this volume) program is helping biologists around the country design short-term monitoring projects for birds. We have found that addressing a series of questions (table 1), in a systematic way, helps insure that projects are well planned. The process is being used by several States and...

A regional assessment of salt marsh restoration and monitoring in the Gulf of Maine

USGS Publications Warehouse

Konisky, R.A.; Burdick, D.M.; Dionne, M.; Neckles, H.A.

2006-01-01

We compiled salt marsh monitoring datasets from 36 complete or imminent restoration projects in the Gulf of Maine to assess regional monitoring and restoration practices. Data were organized by functional indicators and restoration project types (culvert replacement, excavation works, or ditch plugging) then pooled to generate mean values for indicators before restoration, after restoration, and at reference sites. Monitoring data were checked against the regional standards of a voluntary protocol for the Gulf of Maine. Data inventories showed that vegetation and salinity indicators were most frequently collected (89 and 78% of sites, respectively), whereas nekton, bird, and hydrologic measures were collected at only about half of the sites. Reference conditions were monitored at 72% of sites. Indicators were analyzed to see if project sites were degraded relative to reference areas and to detect ecological responses to restoration activities. Results showed that compared to reference areas, prerestoration sites had smaller tidal ranges, reduced salinity levels, greater cover of brackish plants species, and lower cover of halophyte plants. Following restoration, physical factors rebounded rapidly with increased flood and salinity levels after about one year, especially for culvert projects. Biological responses were less definitive and occurred over longer time frames. Plant communities trended toward recovered halophytes and reduced brackish species at 3+ years following restoration. Nekton and avian indicators were indistinguishable among reference, impacted, and restored areas. The protocol was successful in demonstrating restoration response for the region, but results were limited by regional inconsistencies in field practices and relatively few multiyear datasets. To improve future assessment capabilities, we encourage greater adherence to the standard protocol throughout the Gulf of Maine salt marsh restoration community.

Integral strategy for evaluation of fecal indicator performance in bird-influenced saline inland waters.

PubMed

Kirschner, Alexander K T; Zechmeister, Thomas C; Kavka, Gerhard G; Beiwl, Christian; Herzig, Alois; Mach, Robert L; Farnleitner, Andreas H

2004-12-01

Wild birds are an important nonpoint source of fecal contamination of surface waters, but their contribution to fecal pollution is mostly difficult to estimate. Thus, to evaluate the relation between feces production and input of fecal indicator bacteria (FIB) into aquatic environments by wild waterfowl, we introduced a new holistic approach for evaluating the performance of FIB in six shallow saline habitats. For this, we monitored bird abundance, fecal pellet production, and the abundance of FIB concomitantly with a set of environmental variables over a 9-month period. For estimating fecal pellet production, a new protocol of fecal pellet counting was introduced, which was called fecal taxation (FTX). We could show that, over the whole range of investigated habitats, bird abundance, FTX values, and FIB abundance were highly significantly correlated and could demonstrate the good applicability of the FTX as a meaningful surrogate parameter for recent bird abundances and fecal contamination by birds in shallow aquatic ecosystems. Presumptive enterococci (ENT) were an excellent surrogate parameter of recent fecal contamination in these saline environments for samples collected at biweekly to monthly sampling intervals while presumptive Escherichia coli and fecal coliforms (FC) were often undetectable. Significant negative correlations with salinity indicated that E. coli and FC survival was hampered by osmotic stress. Statistical analyses further revealed that fecal pollution-associated parameters represented one system component independent from other environmental variables and that, besides feces production, rainfall, total suspended solids (direct), and trophy (indirect) had significant positive effects on ENT concentrations. Our holistic approach of linking bird abundance, feces production, and FIB detection with environmental variables may serve as a powerful model for application to other aquatic ecosystems.

Integral Strategy for Evaluation of Fecal Indicator Performance in Bird-Influenced Saline Inland Waters

PubMed Central

Kirschner, Alexander K. T.; Zechmeister, Thomas C.; Kavka, Gerhard G.; Beiwl, Christian; Herzig, Alois; Mach, Robert L.; Farnleitner, Andreas H.

2004-01-01

Wild birds are an important nonpoint source of fecal contamination of surface waters, but their contribution to fecal pollution is mostly difficult to estimate. Thus, to evaluate the relation between feces production and input of fecal indicator bacteria (FIB) into aquatic environments by wild waterfowl, we introduced a new holistic approach for evaluating the performance of FIB in six shallow saline habitats. For this, we monitored bird abundance, fecal pellet production, and the abundance of FIB concomitantly with a set of environmental variables over a 9-month period. For estimating fecal pellet production, a new protocol of fecal pellet counting was introduced, which was called fecal taxation (FTX). We could show that, over the whole range of investigated habitats, bird abundance, FTX values, and FIB abundance were highly significantly correlated and could demonstrate the good applicability of the FTX as a meaningful surrogate parameter for recent bird abundances and fecal contamination by birds in shallow aquatic ecosystems. Presumptive enterococci (ENT) were an excellent surrogate parameter of recent fecal contamination in these saline environments for samples collected at biweekly to monthly sampling intervals while presumptive Escherichia coli and fecal coliforms (FC) were often undetectable. Significant negative correlations with salinity indicated that E. coli and FC survival was hampered by osmotic stress. Statistical analyses further revealed that fecal pollution-associated parameters represented one system component independent from other environmental variables and that, besides feces production, rainfall, total suspended solids (direct), and trophy (indirect) had significant positive effects on ENT concentrations. Our holistic approach of linking bird abundance, feces production, and FIB detection with environmental variables may serve as a powerful model for application to other aquatic ecosystems. PMID:15574941

Coordinated bird monitoring: Technical recommendations for military lands

USGS Publications Warehouse

Bart, Jonathan; Manning, Ann; Fischer, Richard; Eberly, Chris

2012-01-01

The Department of Defense (DoD) is subject to several rules and regulations establishing responsibilities for monitoring migratory birds. The Sikes Act requires all military installations with significant natural resources to prepare and implement Integrated Natural Resources Management Plans (INRMPs). These plans guide the conservation and long-term management of natural resources on military lands in a manner that is compatible with and sustains the military mission. An INRMP also supports compliance with all legal requirements and guides the military in fulfilling its obligation to be a good steward of public land.The management and conservation of migratory birds is addressed in installation INRMPs. The National Environmental Policy Act (NEPA) requires federal agencies to evaluate and disclose the potential environmental impacts of their proposed actions. More recently, DoD signed an MOU (http://www.dodpif.org/downloads/EO13186_MOU-DoD.pdf) for migratory birds, under Executive Order 13186, with the US Fish and Wildlife Service (USFWS) in July 2006 and a Migratory Bird Rule (http://www.dodpif.org/downloads/MigBirdFINALRule_FRFeb2007.pdf) was passed by Congress in February 2007. The Migratory Bird Rule addresses the potential impacts of military readiness activities on populations of migratory birds and establishes a process to implement conservation measures if and when a military readiness activity is expected to have a significant adverse impact on a population of migratory bird species (as determined through the NEPA process). The MOU states that for nonmilitary readiness activities, prior to initiating any activity likely to affect populations of migratory birds DoD shall (1) identify the migratory bird species likely to occur in the area of the proposed action and determine if any species of concern could be affected by the activity, and (2) assess and document, using NEPA when applicable, the effect of the proposed action on species of concern. By following these procedures, DoD will minimize the possibility for a proposed action to unintentionally take migratory birds at a level that would violate any of the migratory bird treaties and potentially impact mission activities. In addition, implementing conservation and monitoring programs for migratory birds supports the ecosystem integrity necessary to sustain DoD's natural resources for the military mission.Non-compliance with the procedural requirements of the MBTA could result in a private party lawsuit under the Administrative Procedures Act (APA). A lawsuit filed under APA involving a Navy bombing range is the basis for a court ruling that unintentional take of migratory birds applies to federal actions. Ensuring the necessary data is available to adequately assess impacts of a proposed action will help avoid lawsuits or help ensure such lawsuits have no grounds. The data gathered in a bird monitoring program will provide the best scientific data available to assess the expected impacts of a proposed action on migratory bird species through the NEPA process. This report presents recommendations developed by the U.S. Geological Survey (USGS) for the Department of Defense (DoD) on establishing a "Coordinated Bird Monitoring (CBM) Plan." The CBM Plan is intended to ensure that DoD meets its conservation and regulatory responsibilities for monitoring birds (Chapter 1). The report relies heavily on recommendations in the report, "Opportunities for improving avian monitoring" (http://www.nabci-us.org/aboutnabci/monitoringreportfinal0307.pdf), by the U.S. North American Bird Conservation Initiative (U.S. NABCI Monitoring Subcommittee, 2007) and on a review of 358 current DoD bird monitoring programs carried out as part of this project (Chapter 2). This report contains 12 recommendations which, if followed, would result in a comprehensive, efficient, and useful approach to bird monitoring. The recommendations are based on the entire report but are presented together at the end of Chapter 1. DoD has agreed to consider implementing these recommendations; however, final decisions will be based upon such factors as the availability of resources and military mission considerations. These recommendations from USGS can be summarized into 6 major themes: A major report on monitoring was released in 2007 by the U.S. North American Bird Conservation Initiative (http://www.nabci-us.org/main2.html). DoD can be consistent with this report by establishing policy that monitoring will be explicitly acknowledged as an integral element of bird management and conservation (Recommendation 1). The design of monitoring and assessment programs for birds should include the following steps: Preparation of a document describing the program's goals, objectives, and methods similar to a format we provide (Recommendation 2, Chapter 4). Selection of field methods using an "expert system" developed in this project (Recommendation 3, Chapter 5) or another well-documented system. Preparation and storage of metadata describing the monitoring program in the Natural Resources Monitoring Partnership (NRMP), and other appropriate databases Recommendation 4, Chapter 6). Entry of the survey data using eBird (http://ebird.org/content/dod) or the Coordinated Bird Monitoring Database (CBMD) and long-term storage of the data in the CBMD and the Avian Knowledge Network (AKN; Recommendation 5, Chapter 6; http://www.avianknowledge.net/). Submission of major results from the monitoring program for publication in a peer reviewed journal (Recommendation 6). The DoD Legacy Resource Management Program (Legacy; https://www.dodlegacy.org), Environmental Security Technology Certification Program (ESTCP; http://www.serdp.org/), and Strategic Environmental Research and Development Program (SERDP; http://www.serdp.org/) should be encouraged to continue their significant contributions to the foundations of bird monitoring (Recommendation 7, Chapters 1 and 3). Appropriate monitoring should be conducted to identify species of concern on installations. A year-round, one-time survey of birds on installations with habitat for migratory birds would provide the most information to assist compliance with the MOU, the Final Rule, and the NEPA analyses of proposed actions. However, less intensive survey efforts can still be conducted to yield useful information. We describe how various levels of survey effort might be organized and conducted. In addition, continuing surveys, as feasible, would further assist in documenting effects of military readiness and non-readiness activities on species of concern (SOC) (Recommendation 8, Chapter 7). Participation in well-designed, large-scale surveys [(e.g., North American Breeding Bird Survey (BBS; http://www.pwrc.usgs.gov/bbs/), Monitoring Avian Productivity and Survivorship (MAPS; http://www.birdpop.org/maps.htm)] on land that DoD manages or on lands where the results will be of high interest to DoD, will provide DoD and other NABCI members with information important to bird conservation (Recommendation 9, Chapter 8). Review and implementation of the CBM Plan should involve both higher level management and installation-level natural resources managers (Recommendation 11), be implemented through cooperative partnerships (Recommendation 12), and be followed on U.S territory lands and Army Corps of Engineers projects (Recommendation 10).Additional recommendations that pertain to implementing the DoD CBM Plan are discussed in Chapter 9.

Monitoring bird populations by point counts

Treesearch

C. John Ralph; John R. Sauer; Sam Droege

1995-01-01

This volume contains in part papers presented at the Symposium on Monitoring Bird Population Trends by Point Counts, which was held November 6-7, 1991, in Beltsville, Md., in response to the need for standardization of methods to monitor bird populations by point counts. Data from various investigators working under a wide variety of conditions are presented, and...

West Nile Virus and Usutu Virus Monitoring of Wild Birds in Germany.

PubMed

Michel, Friederike; Fischer, Dominik; Eiden, Martin; Fast, Christine; Reuschel, Maximilian; Müller, Kerstin; Rinder, Monika; Urbaniak, Sylvia; Brandes, Florian; Schwehn, Rebekka; Lühken, Renke; Groschup, Martin H; Ziegler, Ute

2018-01-22

By systematically setting up a unique nation-wide wild bird surveillance network, we monitored migratory and resident birds for zoonotic arthropod-borne virus infections, such as the flaviviruses West Nile virus (WNV) and Usutu virus (USUV). More than 1900 wild bird blood samples, from 20 orders and 136 different bird species, were collected between 2014 and 2016. Samples were investigated by WNV and USUV-specific real-time polymerase chain reactions as well as by differentiating virus neutralization tests. Dead bird surveillance data, obtained from organ investigations in 2016, were also included. WNV-specific RNA was not detected, whereas four wild bird blood samples tested positive for USUV-specific RNA. Additionally, 73 USUV-positive birds were detected in the 2016 dead bird surveillance. WNV neutralizing antibodies were predominantly found in long-distance, partial and short-distance migrants, while USUV neutralizing antibodies were mainly detected in resident wild bird species, preferentially with low seroprevalences. To date, WNV-specific RNA has neither been detected in wild birds, nor in mosquitoes, thus, we conclude that WNV is not yet present in Germany. Continued wild bird and mosquito monitoring studies are essential to detect the incursion of zoonotic viruses and to allow risk assessments for zoonotic pathogens.

Small-scale monitoring - can it be integrated with large-scale programs?

Treesearch

C. M. Downes; J. Bart; B. T. Collins; B. Craig; B. Dale; E. H. Dunn; C. M. Francis; S. Woodley; P. Zorn

2005-01-01

There are dozens of programs and methodologies for monitoring and inventory of bird populations, differing in geographic scope, species focus, field methods and purpose. However, most of the emphasis has been placed on large-scale monitoring programs. People interested in assessing bird numbers and long-term trends in small geographic areas such as a local birding area...

Monitoring Birds in a Regional Landscape: Lessons from the Nicolet National Forest Bird Survey

Treesearch

Robert W. Howe; Amy T. Wolf; Tony Rinaldi

1995-01-01

The Nicolet National Forest Bird Survey represents one of the first systematic bird monitoring programs in a USDA National Forest. Volunteers visit approximately 500 permanently marked points biennially (250 each year) during a single weekend of mid-June. Results from the first 6 years provide a general inventory of the Forest's avifauna, documentation of...

A critical look at national monitoring programs for birds and other wildlife species

USGS Publications Warehouse

Sauer, J.R.; O'Shea, T.J.; Bogon, M.A.

2003-01-01

Concerns?about declines in numerous taxa have created agreat deal of interest in survey development. Because birds have traditionally been monitored by a variety of methods, bird surveys form natural models for development of surveys for other taxa. Here I suggest that most bird surveys are not appropriate models for survey design. Most lack important design components associated with estimation of population parameters at sample sites or with sampling over space, leading to estimates that may be biased, I discuss the limitations of national bird monitoring programs designed to monitor population size. Although these surveys are often analyzed, careful consideration must be given to factors that may bias estimates but that cannot be evaluated within the survey. Bird surveys with appropriate designs have generally been developed as part of management programs that have specific information needs. Experiences gained from bird surveys provide important information for development of surveys for other taxa, and statistical developments in estimation of population sizes from counts provide new approaches to overcoming the limitations evident in many bird surveys. Design of surveys is a collaborative effort, requiring input from biologists, statisticians, and the managers who will use the information from the surveys.

Gathering, organizing and accessing data for use in bird conservation across the Americas

USGS Publications Warehouse

Martin, Elizabeth; Peterjohn, Bruce G.; Kelling, Steve; Rich, Terrell D.

2008-01-01

The U.S. North American Bird Conservation Initiative (NABCI) Monitoring Subcommittee (2007) identified the need for a comprehensive plan for integrating and managing bird population monitoring data, and to adapt this as an integral component for improving monitoring activities across North America. While the Subcommittee provided a basic framework to begin development of this data management strategy, input from stakeholders is needed to identify data management needs and the technical capacity necessary to solve those challenges. We organized a session at the Fourth International Partners in Flight Conference to solicit input from session participants from across the Americas and identify their data management needs. Session speakers and participants provided examples of the challenges encountered with data management and how the Internet is increasingly used to provide access to the data needed for bird conservation decisions. Input provided during the session indicated that data management needs extended beyond technology to include scientifi c, conservation, social, institutional, and cultural issues. Because data management is intricately related to all aspects of bird conservation, a coordination process that elevates the importance of data management within the bird conservation community is needed, in addition to improving data management associated with bird population monitoring programs. Development of a comprehensive data management strategy for bird population monitoring data would help address the needs and challenges identified during this session.

Population estimates and monitoring guidelines for endangered Laysan Teal, Anas Laysanensis, at Midway Atoll: Pilot study results 2008-2010.

USGS Publications Warehouse

Reynolds, Michelle H.; Brinck, Kevin W.; Laniawe, Leona

2011-01-01

To improve the Laysan Teal population estimates, we recommend changes to the monitoring protocol. Additional years of data are needed to quantify inter-annual seasonal detection probabilities, which may allow the use of standardized direct counts as an unbiased index of population size. Survey protocols should be enhanced through frequent resights, regular survey intervals, and determining reliable standards to detect catastrophic declines and annual changes in adult abundance. In late 2009 to early 2010, 68% of the population was marked with unique color band combinations. This allowed for potentially accurate adult population estimates and survival estimates without the need to mark new birds in 2010, 2011, and possibly 2012. However, efforts should be made to replace worn or illegible bands so birds can be identified in future surveys. It would be valuable to develop more sophisticated population size and survival models using Program MARK, a state-of-the-art software package which uses likelihood models to analyze mark-recapture data. This would allow for more reliable adult population and survival estimates to compare with the ―source‖ Laysan Teal population on Laysan Island. These models will require additional years of resight data (> 1 year) and, in some cases, an intensive annual effort of marking and recapture. Because data indicate standardized all-wetland counts are a poor index of abundance, monitoring efforts could be improved by expanding resight surveys to include all wetlands, discontinuing the all-wetland counts, and reallocating some of the wetland count effort to collect additional opportunistic resights. Approximately two years of additional bimonthly surveys are needed to validate the direct count as an appropriate index of population abundance. Additional years of individual resight data will allow estimates of adult population size, as specified in recovery criteria, and to track species population dynamics at Midway Atoll.

Dietary Compositions and Their Seasonal Shifts in Japanese Resident Birds, Estimated from the Analysis of Volunteer Monitoring Data

PubMed Central

Yoshikawa, Tetsuro; Osada, Yutaka

2015-01-01

Determining the composition of a bird’s diet and its seasonal shifts are fundamental for understanding the ecology and ecological functions of a species. Various methods have been used to estimate the dietary compositions of birds, which have their own advantages and disadvantages. In this study, we examined the possibility of using long-term volunteer monitoring data as the source of dietary information for 15 resident bird species in Kanagawa Prefecture, Japan. The data were collected from field observations reported by volunteers of regional naturalist groups. Based on these monitoring data, we calculated the monthly dietary composition of each bird species directly, and we also estimated unidentified items within the reported foraging episodes using Bayesian models that contained additional information regarding foraging locations. Next, to examine the validity of the estimated dietary compositions, we compared them with the dietary information for focal birds based on stomach analysis methods, collected from past literatures. The dietary trends estimated from the monitoring data were largely consistent with the general food habits determined from the previous studies of focal birds. Thus, the estimates based on the volunteer monitoring data successfully detected noticeable seasonal shifts in many of the birds from plant materials to animal diets during spring—summer. Comparisons with stomach analysis data supported the qualitative validity of the monitoring-based dietary information and the effectiveness of the Bayesian models for improving the estimates. This comparison suggests that one advantage of using monitoring data is its ability to detect dietary items such as fleshy fruits, flower nectar, and vertebrates. These results emphasize the potential importance of observation data collecting and mining by citizens, especially free descriptive observation data, for use in bird ecology studies. PMID:25723544

West Nile Virus and Usutu Virus Monitoring of Wild Birds in Germany

PubMed Central

Michel, Friederike; Fast, Christine; Reuschel, Maximilian; Müller, Kerstin; Urbaniak, Sylvia; Brandes, Florian; Schwehn, Rebekka; Groschup, Martin H.; Ziegler, Ute

2018-01-01

By systematically setting up a unique nation-wide wild bird surveillance network, we monitored migratory and resident birds for zoonotic arthropod-borne virus infections, such as the flaviviruses West Nile virus (WNV) and Usutu virus (USUV). More than 1900 wild bird blood samples, from 20 orders and 136 different bird species, were collected between 2014 and 2016. Samples were investigated by WNV and USUV-specific real-time polymerase chain reactions as well as by differentiating virus neutralization tests. Dead bird surveillance data, obtained from organ investigations in 2016, were also included. WNV-specific RNA was not detected, whereas four wild bird blood samples tested positive for USUV-specific RNA. Additionally, 73 USUV-positive birds were detected in the 2016 dead bird surveillance. WNV neutralizing antibodies were predominantly found in long-distance, partial and short-distance migrants, while USUV neutralizing antibodies were mainly detected in resident wild bird species, preferentially with low seroprevalences. To date, WNV-specific RNA has neither been detected in wild birds, nor in mosquitoes, thus, we conclude that WNV is not yet present in Germany. Continued wild bird and mosquito monitoring studies are essential to detect the incursion of zoonotic viruses and to allow risk assessments for zoonotic pathogens. PMID:29361762

Cryptochrome expression in the eye of migratory birds depends on their migratory status.

PubMed

Fusani, Leonida; Bertolucci, Cristiano; Frigato, Elena; Foà, Augusto

2014-03-15

Most passerine birds are nocturnal migrants. When kept in captivity during the migratory periods, these species show a migratory restlessness, or Zugunruhe. Recent studies on Sylvia warblers have shown that Zugunruhe is an excellent proxy of migratory disposition. Passerine birds can use the Earth's geomagnetic field as a compass to keep their course during their migratory flight. Among the candidate magnetoreceptive mechanisms are the cryptochromes, flavoproteins located in the retina that are supposed to perceive the magnetic field through a light-mediated process. Previous work has suggested that expression of Cryptochrome 1 (Cry1) is increased in migratory birds compared with non-migratory species. Here we tested the hypothesis that Cry1 expression depends on migratory status. Blackcaps Sylvia atricapilla were caught before fall migration and held in registration cages. When the birds were showing robust Zugunruhe, we applied a food deprivation protocol that simulates a long migratory flight. When the birds were refed after 2 days, their Zugunruhe decreased substantially, as is expected from birds that would interrupt migration for a refuelling stopover. We found that Cry1 expression was higher at night than during daytime in birds showing Zugunruhe, whereas in birds that underwent the fasting-and-refeeding protocol and reduced their levels of Zugunruhe, night Cry1 expression decreased to daytime levels. Our work shows that Cry1 expression is dependent on the presence of Zugunruhe and not on species-specific or seasonal factors, or on the birds being active versus inactive. These results support the hypothesis that cryptochromes underlie magnetoreceptive mechanisms in birds.

Developing a general conceptual framework for avian conservation science

USGS Publications Warehouse

Sauer, J.R.

2003-01-01

Avian conservation science in North America has produced a variety of monitoring programs designed to provide information on population status of birds. Waterfowl surveys provide population estimates for breeding ducks over most of the continent, the North American Breeding Bird Survey (BBS) provides indexes to population change for >400 breeding bird species, and many other surveys exist that index bird populations at a variety of scales and seasons. However, many fundamental questions about bird population change remain unanswered. I suggest that analyses of monitoring data provide limited understanding of causes of population change, and that the declining species paradigm (Caughley 1994) is sometimes an inefficient approach to increasing our understanding of causes of population change. In North America, the North American Bird Conservation Initiative (NABCI) provides an opportunity to implement alternative approaches that use management, modeling of population responses to management, and monitoring in combination to increase our understanding of bird populations. In adaptive resources management, modeling provides predictions about consequences of management, and monitoring data allow us to assess the population consequences of management. In this framework, alternative hypotheses about response of populations to management can be evaluated by formulating a series of models with differing structure, and management and monitoring provide information about which model best predicts population response.

The Predatory Bird Monitoring Scheme: identifying chemical risks to top predators in Britain.

PubMed

Walker, Lee A; Shore, Richard F; Turk, Anthony; Pereira, M Glória; Best, Jennifer

2008-09-01

The Predatory Bird Monitoring Scheme (PBMS) is a long term (>40 y), UK-wide, exposure monitoring scheme that determines the concentration of selected pesticides and pollutants in the livers and eggs of predatory birds. This paper describes how the PBMS works, and in particular highlights some of the key scientific and policy drivers for monitoring contaminants in predatory birds and describes the specific aims, scope, and methods of the PBMS. We also present previously unpublished data that illustrates how the PBMS has been used to demonstrate the success of mitigation measures in reversing chemical-mediated impacts; identify and evaluate chemical threats to species of high conservation value; and finally to inform and refine monitoring methodologies. In addition, we discuss how such schemes can also address wider conservation needs.

Detection Protocols for West Nile Virus in Mosquitoes, Birds, and Nonhuman Mammals.

PubMed

Kauffman, Elizabeth B; Franke, Mary A; Kramer, Laura D

2016-01-01

West Nile virus is the most widespread mosquito-borne virus in the world, and the most common cause of encephalitis in the USA. Surveillance for this medially important mosquito-borne pathogen is an important part of public health practice. Here we present protocols for testing environmental samples such as mosquitoes, nonvertebrate mammals, and birds for this virus, including RT-PCR, virus isolation in cell culture, and antigenic assays, as well as serologic assays for antibody detection.

A western state perspective on monitoring and managing neotropical migratory birds

Treesearch

Frank Howe

1993-01-01

Neotropical migratory bird monitoring programs can contribute greatly to a more holistic and proactive management approach for state agencies. It is, however, imperative that these monitoring programs be scientifically designed and clearly communicated to managers. Information from monitoring programs can be used to develop multiple-species habitat management...

Limited efficiency of universal mini-barcode primers for DNA amplification from desert reptiles, birds and mammals.

PubMed

Arif, I A; Khan, H A; Al Sadoon, M; Shobrak, M

2011-10-31

In recent years, DNA barcoding has emerged as a powerful tool for species identification. We report an extended validation of a universal DNA mini-barcode for amplification of 130-bp COI segments from 23 specimens collected from a desert environment, including 11 reptiles, five mammals and seven birds. Besides the standard double-annealing protocol, we also tested a more stringent single-annealing protocol. The PCR success rate for the amplification of the mini-barcode region was: mammals (4/5), reptiles (5/11) and birds (4/7). These findings demonstrate the limited utility of universal primers for mini-barcoding, at least for these vertebrate taxa that we collected from the Saudi Arabian desert.

Bioacoustic monitoring of nocturnal songbird migration in a southern great lakes ecosystem

NASA Astrophysics Data System (ADS)

Sanders, Claire Elizabeth

Many species of birds produce short vocalizations during nocturnal migration. My thesis uses bioacoustic monitoring of these night flight calls to study bird migration through a southern Great Lakes ecosystem. I deployed recording devices around western Lake Erie during spring and fall migrations. Analysis of thousands of hours of recordings revealed that night flight calls accurately predicted both the magnitude of migration, as well as the timing of migrant passage, as assessed by banding. The first arrival dates for 48 species of migratory birds were significantly earlier on Pelee Island than on mainland Ontario in the spring. More flight calls were detected over Pelee Island than over mainland comparison sites. These results suggest that many birds cross Lake Erie in spring and fall, and that islands are important for migratory birds. This research provides insight into the use of acoustics for monitoring birds in active migration.

DEVELOPING AND IMPLEMENTING A BIRD MIGRATION MONITORING, ASSESSMENT AND PUBLIC OUTREACH PROGRAM FOR YOUR COMMUNITY - THE BIRDCAST PROJECT

EPA Science Inventory

The USEPA has developed a technology transfer handbook for the EMPACt BirdCast bird migration monitoring project. The document is essentially a "How-To" Handbook that addresses the planning and implementation steps that were needed to develop, operate and maintain a program simil...

Monitoring bird populations: the role of bird observatories and nongovernmental organizations

Treesearch

Geoffrey R. Geupel; Nadav Nur

1993-01-01

Nongovernmental organizations (NGOs) currently participating in Partners in Flight have been monitoring bird populations in North America for decades. These regional organization have strong grass roots and private sector support and are able to conduct truly long term studies by using nontraditional funding sources and staffing with dedicated volunteers and personnel...

USE OF CITIZEN BIRD POPULATION MONITORING DATA FOR ECOLOGICAL RISK ASSESSMENT

EPA Science Inventory

Birds are among the most conspicuous and easily monitored indicators of environmental health and change. Although volunteer avian monitoring ('citizen science') programs provide unique opportunities to gather data at fine and broad geographic scales simultaneously, and over long...

A sampling design framework for monitoring secretive marshbirds

USGS Publications Warehouse

Johnson, D.H.; Gibbs, J.P.; Herzog, M.; Lor, S.; Niemuth, N.D.; Ribic, C.A.; Seamans, M.; Shaffer, T.L.; Shriver, W.G.; Stehman, S.V.; Thompson, W.L.

2009-01-01

A framework for a sampling plan for monitoring marshbird populations in the contiguous 48 states is proposed here. The sampling universe is the breeding habitat (i.e. wetlands) potentially used by marshbirds. Selection protocols would be implemented within each of large geographical strata, such as Bird Conservation Regions. Site selection will be done using a two-stage cluster sample. Primary sampling units (PSUs) would be land areas, such as legal townships, and would be selected by a procedure such as systematic sampling. Secondary sampling units (SSUs) will be wetlands or portions of wetlands in the PSUs. SSUs will be selected by a randomized spatially balanced procedure. For analysis, the use of a variety of methods as a means of increasing confidence in conclusions that may be reached is encouraged. Additional effort will be required to work out details and implement the plan.

BIRD COMMUNITIES AND HABITAT AS ECOLOGICAL INDICATORS OF FOREST CONDITION IN REGIONAL MONITORING

EPA Science Inventory

Ecological indicators for long-term monitoring programs are needed to detect and assess changing environmental conditions, We developed and tested community-level environmental indicators for monitoring forest bird populations and associated habitat. We surveyed 197 sampling plo...

eBird—Using citizen-science data to help solve real-world conservation challenges (Invited)

NASA Astrophysics Data System (ADS)

Sullivan, B. L.; Iliff, M. J.; Wood, C. L.; Fink, D.; Kelling, S.

2010-12-01

eBird (www.ebird.org) is an Internet-based citizen-science project that collects bird observations worldwide. eBird is foremost a tool for birders, providing users with a resource for bird information and a way to keep track of their personal bird lists, thus establishing a model for sustained participation and new project growth. Importantly, eBird data are shared with scientists and conservationists working to save birds and their habitats. Here we highlight two different ways these data are used: as a real-time data gathering and visualization tool; and as the primary resource for developing large-scale bird distribution models that explore species-habitat associations and climate change scenarios. eBird provides data across broad temporal and spatial scales, and is a valuable tool for documenting and monitoring bird populations facing a multitude of anthropogenic and environmental impacts. For example, a focused effort to monitor birds on Gulf Coast beaches using eBird is providing essential baseline data and enabling long-term monitoring of bird populations throughout the region. Additionally, new data visualization tools that incorporate data from eBird, NOAA, and Google, are specifically designed to highlight the potential impacts of the Gulf oil spill on bird populations. Through a collaboration of partners in the DataONE network, such as the Oak Ridge National Laboratory, we will use supercomputing time from the National Science Foundation’s TeraGrid to allow Lab scientists to model bird migration phenology at the population level based on eBird data. The process involves combining bird observations with remotely sensed variables such as landcover and greening index to predict bird movements. Preliminary results of these models allow us to animate bird movements across large spatial scales, and to explore how migration timing might be affected under different climate change scenarios.

Development of bird population monitoring in New Zealand: Proceedings of a workshop

Treesearch

E.B. Spurr; C.J. Ralph

2006-01-01

A workshop on monitoring terrestrial (land) bird populations in New Zealand was held on 11 December 2005, following the Australasian Ornithological Conference, St Mary's Parish Centre, Blenheim, New Zealand. The primary objective of the workshop was to consider options for the design and implementation of a terrestrial breeding bird population survey for New...

Clinical utility of a complete diagnostic protocol for the ocular evaluation of free-living raptors.

PubMed

Labelle, Amber L; Whittington, Julia K; Breaux, Carrie B; Labelle, Philippe; Mitchell, Mark A; Zarfoss, Mitzi K; Schmidt, Stephanie A; Hamor, Ralph E

2012-01-01

  To describe a protocol for the examination of free-living raptors and report the ophthalmic examination findings of seven raptor species native to central Illinois, namely the barred owl, Cooper's hawk, eastern screech owl, great horned owl, American kestrel, red-tailed hawk, and turkey vulture and to determine if the findings relative to visual prognosis affected eligibility for future release.   Seventy-nine free-living raptors.   Under manual restraint, complete ophthalmic examination including slit-lamp biomicroscopy and indirect funduscopy, applanation tonometry, rebound tonometry, ocular morphometrics, B-mode ultrasound, and electroretinography (ERG) were performed on each bird. Histopathology of enucleated globes was performed after euthanasia or death in selected cases.   The examination protocol was easily performed using manual restraint alone on all birds. Ocular lesions were detected in 48.1% of birds, with 47.3% affected unilaterally and 52.6% affected bilaterally. Ocular lesions were considered to be vision threatening in 29.0% of the unilaterally affected birds and 29.0% of the bilaterally affected birds. The most common case outcomes were discharge from hospital to rehabilitation facility (45.6%) followed by euthanasia (43.0%). The presence of an ocular lesion or a vision-threatening ocular lesion was not significantly associated with outcome. Reference ranges are reported for B-mode ultrasound, ocular morphometrics, and horizontal corneal diameter in all species.   Complete ophthalmic examination can be supplemented by the use of ocular morphometrics, ultrasound, and ERG in the manually restrained raptor. These advanced diagnostic techniques may be useful in developing more objective criteria for evaluating eligibility for release following rehabilitation of free-living birds of prey. © 2011 American College of Veterinary Ophthalmologists.

Lab-on-a-bird: biophysical monitoring of flying birds.

PubMed

Gumus, Abdurrahman; Lee, Seoho; Ahsan, Syed S; Karlsson, Kolbeinn; Gabrielson, Richard; Guglielmo, Christopher G; Winkler, David W; Erickson, David

2015-01-01

The metabolism of birds is finely tuned to their activities and environments, and thus research on avian systems can play an important role in understanding organismal responses to environmental changes. At present, however, the physiological monitoring of bird metabolism is limited by the inability to take real-time measurements of key metabolites during flight. In this study, we present an implantable biosensor system that can be used for continuous monitoring of uric acid levels of birds during various activities including flight. The system consists of a needle-type enzymatic biosensor for the amperometric detection of uric acid in interstitial fluids. A lightweight two-electrode potentiostat system drives the biosensor, reads the corresponding output current and wirelessly transfers the data or records to flash memory. We show how the device can be used to monitor, in real time, the effects of short-term flight and rest cycles on the uric acid levels of pigeons. In addition, we demonstrate that our device has the ability to measure uric acid level increase in homing pigeons while they fly freely. Successful application of the sensor in migratory birds could open up a new way of studying birds in flight which would lead to a better understanding of the ecology and biology of avian movements.

Avian Species Inventory at Manzanar National Historic Site, California - Final Report to the National Park Service

USGS Publications Warehouse

Hart, Jan; Drost, Charles

2008-01-01

We conducted a baseline inventory for avian species at Manzanar National Historic Site, Inyo County, Calif., from 2002 to 2005. Under the guidelines of the Mojave Network Biological Inventory Program, the primary objectives for this study were to (1) inventory and document the occurrence of avian species at Manzanar, with the goal of documenting at least 90 percent of the species present; (2) provide a geographic information system (GIS)-referenced list of sensitive species occurring at Manzanar that are rare, on Federal or State lists, or otherwise worthy of special consideration; and (3) enter all species data into the National Park Service NPSpecies database. Survey methods included general area searches, variable circular plot point-count censusing, nocturnal surveys, and nest searching. During 13 year-round survey sessions, we documented the occurrence of 132 bird species at Manzanar and confirmed breeding by 19 of these. Based on our findings, as well as review of the literature and searches for records of species occurrence, we estimate inventory completeness for regularly occurring bird species at Manzanar to be near 90 percent. No sensitive species on Federal or State lists were found. The distribution and relative abundance of common bird species at this site is now well enough known to begin development of a monitoring protocol for this group.

Sexing chick mRNA: A protocol based on quantitative real-time polymerase chain reaction.

PubMed

Wan, Z; Lu, Y; Rui, L; Yu, X; Li, Z

2017-03-01

The accurate identification of sex in birds is important for research on avian sex determination and differentiation. Polymerase chain reaction (PCR)-based methods have been widely applied for the molecular sexing of birds. However, these methods have used genomic DNA. Here, we present the first sexing protocol for chick mRNA based on real-time quantitative PCR. We demonstrate that this method can accurately determine sex using mRNA from chick gonads and other tissues, such as heart, liver, spleen, lung, and muscle. The strategy of this protocol also may be suitable for other species in which sex is determined by the inheritance of sex chromosomes (ZZ male and ZW female). © 2016 Poultry Science Association Inc.

Monitoring as a Means to Focus Research and Conservation - The Grassland Bird Monitoring Example

Treesearch

Brenda Dale; Michael Norton; Constance Downes; Brian Collins

2005-01-01

One recommendation of the Canadian Landbird Monitoring Strategy of Partners in Flight-Canada is to improve monitoring capability for rapidly declining grassland birds. In Canada, we lack statistical power for many grassland species because they are detected in small numbers, on a low number of routes, or show high year-to-year variability. In developing a Grassland...

An overview of a landbird monitoring program at Tortuguero, on the Caribbean coast of Costa Rica

Treesearch

C. John Ralph; Margaret J. Widdowson; Robert I. Frey; Pablo A. Herrera; Brian P. O' Donnell

2005-01-01

Since 1994, the Tortuguero Integrated Bird Monitoring Program has been monitoring birds in a coastal lowland rain forest of northeast Costa Rica. The Program has combined the use of area searches, constanteffort mist netting, and migration counts into a longterm landbird monitoring and training program following the recommendations of the Partners In Flight &ndash...

Analysis of U. S. Forest Service bird point-count monitoring database - implications for designing and implementing avian monitoring

Treesearch

Eric T. Linder; David A. Buehler

2005-01-01

In 1996, Region 8 of the U. S. Forest Service implemented a program to monitor landbirds on southeastern U.S. national forests. The goal was to develop a monitoring system that could document population trends and bird-habitat relationships. Using power analysis, we examined the ability of the monitoring program to detect population trends (3 percent annual change) at...

A Quantitative PCR Protocol for Detection of Oxyspirura petrowi in Northern Bobwhites (Colinus virginianus).

PubMed

Kistler, Whitney M; Parlos, Julie A; Peper, Steven T; Dunham, Nicholas R; Kendall, Ronald J

2016-01-01

Oxyspirura petrowi is a parasitic nematode that infects wild birds. This parasite has a broad host range, but has recently been reported in high prevalences from native Galliformes species in the United States. In order to better understand the impact O. petrowi has on wild bird populations, we developed a quantitative PCR protocol to detect infections in wild northern bobwhites (Colinus virginianus). We used paired fecal and cloacal swab samples from wild caught and experimentally infected northern bobwhites and matching fecal float data from experimentally infected birds to validate our assay. Overall we detected more positive birds from fecal samples than the paired cloacal swabs and there was strong agreement between the qPCR results from fecal samples and from fecal flotation (84%; κ = 0.69 [0.53-0.84 95% CI]). We also detected O. petrowi DNA in ten replicates of samples spiked with one O. petrowi egg. This qPCR assay is an effective assay to detect O. petrowi infections in wild birds. Our results suggest that fecal samples are the most appropriate sample for detecting infections; although, cloacal swabs can be useful for determining if O. petrowi is circulating in a population.

A Quantitative PCR Protocol for Detection of Oxyspirura petrowi in Northern Bobwhites (Colinus virginianus)

PubMed Central

Kistler, Whitney M.; Parlos, Julie A.; Peper, Steven T.; Dunham, Nicholas R.; Kendall, Ronald J.

2016-01-01

Oxyspirura petrowi is a parasitic nematode that infects wild birds. This parasite has a broad host range, but has recently been reported in high prevalences from native Galliformes species in the United States. In order to better understand the impact O. petrowi has on wild bird populations, we developed a quantitative PCR protocol to detect infections in wild northern bobwhites (Colinus virginianus). We used paired fecal and cloacal swab samples from wild caught and experimentally infected northern bobwhites and matching fecal float data from experimentally infected birds to validate our assay. Overall we detected more positive birds from fecal samples than the paired cloacal swabs and there was strong agreement between the qPCR results from fecal samples and from fecal flotation (84%; κ = 0.69 [0.53–0.84 95% CI]). We also detected O. petrowi DNA in ten replicates of samples spiked with one O. petrowi egg. This qPCR assay is an effective assay to detect O. petrowi infections in wild birds. Our results suggest that fecal samples are the most appropriate sample for detecting infections; although, cloacal swabs can be useful for determining if O. petrowi is circulating in a population. PMID:27893772

A Review of Avian Monitoring and Mitigation Information at Existing Utility-Scale Solar Facilities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walston, Leroy J.; Rollins, Katherine E.; Smith, Karen P.

2015-01-01

There are two basic types of solar energy technology: photovoltaic and concentrating solar power. As the number of utility-scale solar energy facilities using these technologies is expected to increase in the United States, so are the potential impacts on wildlife and their habitats. Recent attention is on the risk of fatality to birds. Understanding the current rates of avian mortality and existing monitoring requirements is an important first step in developing science-based mitigation and minimization protocols. The resulting information also allows a comparison of the avian mortality rates of utility-scale solar energy facilities with those from other technologies and sources,more » as well as the identification of data gaps and research needs. This report will present and discuss the current state of knowledge regarding avian issues at utility-scale solar energy facilities.« less

Mountain birdwatch: developing a coordinated monitoring program for high-elevation birds in the Atlantic northern forest

Treesearch

John D. Lloyd; Julie Hart; J. Dan Lambert

2010-01-01

Birds occupying high-elevation forests in the northeast are perceived to be at risk from a variety of external forces, most notably the potential loss and alteration of habitat associated with global climate change and the increased deployment of wind-energy facilities. However, the Breeding Bird Survey (BBS), a standardized national monitoring scheme widely used to...

50 CFR 15.23 - Permits for zoological breeding or display programs.

Code of Federal Regulations, 2012 CFR

2012-10-01

... education protocol that provides information on educational materials on the ecology and/or conservation... self-sustaining population of the exotic bird species in captivity; (iii) A statement on efforts to... the population from which the exotic bird was or would be removed; (4) Whether the breeding or display...

50 CFR 15.23 - Permits for zoological breeding or display programs.

Code of Federal Regulations, 2014 CFR

2014-10-01

... education protocol that provides information on educational materials on the ecology and/or conservation... self-sustaining population of the exotic bird species in captivity; (iii) A statement on efforts to... the population from which the exotic bird was or would be removed; (4) Whether the breeding or display...

50 CFR 15.23 - Permits for zoological breeding or display programs.

Code of Federal Regulations, 2013 CFR

2013-10-01

... education protocol that provides information on educational materials on the ecology and/or conservation... self-sustaining population of the exotic bird species in captivity; (iii) A statement on efforts to... the population from which the exotic bird was or would be removed; (4) Whether the breeding or display...

The need for a North American coordinated bird monitoring program

Treesearch

Jonathan Bart; Ralph C. John

2005-01-01

Bird monitoring is at a crossroads. While monitoring programs have existed in North America for nearly a century, recent political, biological, sociological, and economic changes necessitate a new and more efficient approach. Fortunately we now have tools available to meet the demands, including powerful coalitions of the willing within agencies, organizations, and...

Bird Communities of Southern Forests

Treesearch

William C. Hunter; James G. Dickson; David N. Pashley; Paul B. Hamel

2002-01-01

Birds constitute a high-profile group of species that attract a great deal of attention as watchable wildlife. Also, birds are important as indicators of habitat conditions and environmental health. Compared to other groups of animals and plants, birds are relatively conspicuous and can be easily monitored. Available information on bird ecology is substantial, but...

Monitoring for Adaptive Management in Coniferous Forests of the Northern Rockies

Treesearch

Jock S. Young; John R. Hoffland; Richard L. Hutto

2005-01-01

Monitoring can and should be much more than the effort to track population trends; it can be a proactive effort to understand the effects of human activities on bird populations. It should be an integral part of the adaptive management process. With this in mind, the Northern Region Landbird Monitoring Program has a dual focus: (1) to monitor long-term bird population...

Persistent Surveillance of Transient Events with Unknown Statistics

DTIC Science & Technology

2016-12-18

different bird species by a documentary maker is shown in Fig. 1. Additional examples of scenarios following this setting include robots patrolling the...persistent monitoring application in which a documentary maker would like to monitor three different species of birds appearing in three discrete, species...specific locations. Bird sightings at each location follow a stochastic process with a rate that is initially unknown to the documentary maker and must

A land manager's guide to point counts of birds in the Southeast

USGS Publications Warehouse

Hamel, P.B.; Smith, W.P.; Twedt, D.J.; Woehr, J.R.; Morris, E.; Hamilton, R.B.; Cooper, R.J.

1996-01-01

Current widespread concern for the status of neotropical migratory birds has sparked interest in techniques for inventorying and monitoring populations of these and other birds in southeastern forest habitats. The present guide gives detailed instructions for conducting point counts of birds. It further presents a detailed methodology for the design and conduct of inventorial and monitoring surveys based on point counts, including discussion of sample size determination, distribution of counts among habitats, cooperation among neighboring land managers, vegetation sampling, standard data format, and other topics. Appendices provide additional information, making this guide a stand-alone text for managers interested in developing inventories of bird populations on their lands.

Effects of different infrared beak treatment protocols on chicken welfare and physiology

USDA-ARS?s Scientific Manuscript database

Beak trimming in laying hens has been a concern for both the welfare and quality of the birds. However, without beak trimming the concerns of mortality and cannibalism due to pecking with untrimmed beaks is an even greater concern to the health of birds. Infrared beak trimming provides an alternativ...

The Important Bird Areas Program in the United States: building a network of sites for conservation, state by state

Treesearch

Jeffrey V. Wells; Daniel K. Niven; John Cecil

2005-01-01

The Important Bird Area (IBA) program is an international effort to identify, conserve, and monitor a network of sites that provide essential habitat for bird populations. BirdLife International began the IBA program in Europe in 1985. Since that time, BirdLife partners in more than 100 countries have joined together to build the global IBA network. Audubon (BirdLife...

Overview of national bird population monitoring programs and databases

Treesearch

Gregory S. Butcher; Bruce Peterjohn; C. John Ralph

1993-01-01

A number of programs have been set up to monitor populations of nongame migratory birds. We review these programs and their purposes and provide information on obtaining data or results from these programs. In addition, we review recommendations for improving these programs.

Evaluation and optimization of microbial DNA extraction from fecal samples of wild Antarctic bird species

PubMed Central

Eriksson, Per; Mourkas, Evangelos; González-Acuna, Daniel; Olsen, Björn; Ellström, Patrik

2017-01-01

ABSTRACT Introduction: Advances in the development of nucleic acid-based methods have dramatically facilitated studies of host–microbial interactions. Fecal DNA analysis can provide information about the host’s microbiota and gastrointestinal pathogen burden. Numerous studies have been conducted in mammals, yet birds are less well studied. Avian fecal DNA extraction has proved challenging, partly due to the mixture of fecal and urinary excretions and the deficiency of optimized protocols. This study presents an evaluation of the performance in avian fecal DNA extraction of six commercial kits from different bird species, focusing on penguins. Material and methods: Six DNA extraction kits were first tested according to the manufacturers’ instructions using mallard feces. The kit giving the highest DNA yield was selected for further optimization and evaluation using Antarctic bird feces. Results: Penguin feces constitute a challenging sample type: most of the DNA extraction kits failed to yield acceptable amounts of DNA. The QIAamp cador Pathogen kit (Qiagen) performed the best in the initial investigation. Further optimization of the protocol resulted in good yields of high-quality DNA from seven bird species of different avian orders. Conclusion: This study presents an optimized approach to DNA extraction from challenging avian fecal samples. PMID:29152162

Winter bird population studies and project prairie birds for surveying grassland birds

USGS Publications Warehouse

Twedt, D.J.; Hamel, P.B.; Woodrey, M.S.

2008-01-01

We compared 2 survey methods for assessing winter bird communities in temperate grasslands: Winter Bird Population Study surveys are area-searches that have long been used in a variety of habitats whereas Project Prairie Bird surveys employ active-flushing techniques on strip-transects and are intended for use in grasslands. We used both methods to survey birds on 14 herbaceous reforested sites and 9 coastal pine savannas during winter and compared resultant estimates of species richness and relative abundance. These techniques did not yield similar estimates of avian populations. We found Winter Bird Population Studies consistently produced higher estimates of species richness, whereas Project Prairie Birds produced higher estimates of avian abundance for some species. When it is important to identify all species within the winter bird community, Winter Bird Population Studies should be the survey method of choice. If estimates of the abundance of relatively secretive grassland bird species are desired, the use of Project Prairie Birds protocols is warranted. However, we suggest that both survey techniques, as currently employed, are deficient and recommend distance- based survey methods that provide species-specific estimates of detection probabilities be incorporated into these survey methods.

Sixteen years of habitat-based bird monitoring in the Nicolet National Forest

Treesearch

Robert W. Howe; Lance J. Roberts

2005-01-01

The 16-year-old Nicolet National Forest Bird Survey is the longest-running volunteer monitoring program on any U.S. national forest. Every year, teams of volunteer observers led by at least one expert with proven field experience sample more than 250 permanent points during the second weekend in June. Altogether 512 points are monitored, approximately half during a...

A new method for wireless video monitoring of bird nests

Treesearch

David I. King; Richard M. DeGraaf; Paul J. Champlin; Tracey B. Champlin

2001-01-01

Video monitoring of active bird nests is gaining popularity among researchers because it eliminates many of the biases associated with reliance on incidental observations of predation events or use of artificial nests, but the expense of video systems may be prohibitive. Also, the range and efficiency of current video monitoring systems may be limited by the need to...

75 FR 18764 - Migratory Bird Subsistence Harvest in Alaska; Harvest Regulations for Migratory Birds in Alaska...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-13

... Steller's eider harvest was reported, and no Steller's eiders were found shot during in-season... that one yellow-billed loon was found dead in a fishing net; one severely injured yellow-billed loon... allowing such hunting. See Statutory Authority section for more details. One of the goals of the Protocol...

French citizens monitoring ordinary birds provide tools for conservation and ecological sciences

NASA Astrophysics Data System (ADS)

Jiguet, Frédéric; Devictor, Vincent; Julliard, Romain; Couvet, Denis

2012-10-01

Volunteer-based standardized monitoring of birds has been widely implemented in Europe and North America. In France, a breeding bird survey is running since 1989 and offers keen birdwatchers to count spring birds annually during 5 min exactly on 10 fix points within a randomly selected square. The first goal of such breeding bird surveys is to measure temporal trends in order to detect possible species declines. Combining annual indices of species sharing ecological affinities or a protected/red list status further provides biodiversity indicators for policy makers. Because the sampling effort is similar among sites, and because the initial selection of monitored sites is random, the temporal trends can be considered representative of national trends, and spatial comparisons of the obtained metrics are possible. Species abundance, community richness but also community specialization and average trophic level can be estimated for each site and each year and further related to the wide range of habitat and landscape characteristics and to agricultural or forestry practices. The large number of sites allows overcoming the opposition between adaptive and passive monitoring, making such schemes fitted to adaptive monitoring. This provides opportunities to determine which type of management or practices favour biodiversity. The comparison of population fate or community dynamics across a wide range of climates and temperatures, e.g. from southern to northern Europe, revealed how European birds are already affected by climate change. Bird communities are shifting northwards, but at a slower rate than temperatures, while bird populations have larger growth rates away from their hot thermal limit. Finally, such large-scale long-term monitoring data on a complete taxonomic group (Aves) is original and offers the opportunity to compare different measures of biological diversity, such as taxonomic, phylogenetic and functional diversity. Such a citizen science scheme is an efficient scientific tool (numerous papers published in international peer-reviewed journals) which is furthermore highly cost-effective, with a reduced permanent staff in a state insitution coordonating the network and analysing the data, while a similar survey conducted by state staff only would cost more than one million euros annually. The future development of bio-economic dynamic models for providing scenarios of sustainable farming and logging to maintain biodiversity will further highlight the necessity of such volunteer monitoring for policy makers and decision planning. Scientific and logistic partnerships could be proposed to help developing such a monitoring scheme in China.

Design of a Monitoring Program for Northern Spotted Owls

Treesearch

Jonathan Bart; Douglas S. Robson

1995-01-01

This paper discusses methods for estimating population trends of Northern Spotted Owls (Strix occidentalis caurina) based on point counts. Although the monitoring program will have five distinct components, attention here is restricted to one of these: roadside surveys of territorial birds. Analyses of Breeding Bird Survey data and computer...

Role of Brazilian zoos in ex situ bird conservation: from 1981 to 2005.

PubMed

Azevedo, Cristiano S; Young, Robert J; Rodrigues, Marcos

2011-01-01

Zoos may play an important role in conservation when they maintain and breed large numbers of animals that are threatened with extinction. Bird conservation is in a privileged situation owing to the extensive biological information available about this class. Annual inventories produced by the "Sociedade de Zoológicos do Brasil" in the years 1981, 1990, 2000, and 2005 were analyzed. Variables, such as the number of zoos per geographic region; number of birds held; number of bird species in each IUCN threat category; number of exotic and native bird species; number of potentially breeding bird species; number of bird species in each order; and number of threatened bird species breeding, were analyzed. Brazilian zoos kept more than 350 bird species. The number of bird species and specimens held by the Brazilian Zoos increased from 1981 to 2000, but decreased in 2005. The same pattern was observed for the number of species in each IUCN threat category. Results showed that the potential of the Brazilian zoos in bird conservation needs to be enhanced because they maintain threatened species but do not implement systematic genetic, reproductive, or behavioral management protocols for most species. © 2010 Wiley Periodicals, Inc.

A Land Manager's Guide to Point Counts of Birds in the Southeast

Treesearch

Paul B. Hamel; Winston P. Smith; Daniel J. Twedt; James R. Woehr; Eddie Morris; Robert B. Hamilton; Robert J. Cooper

1996-01-01

Current widespread concern for the status of neotropical migratory birds has sparked interest in techniques for inventorying and monitoring populations of these and other birds in southeastern forest habitats. The present guide gives detailed instructions for conducting point counts of birds. It further presents a detailed methodology for the design and conduct of...

Invasive rats strengthen predation pressure on bird eggs in a South Pacific island rainforest.

PubMed

Duron, Quiterie; Bourguet, Edouard; De Meringo, Hélène; Millon, Alexandre; Vidal, Eric

2017-12-01

Invasive rats ( Rattus spp.) are known to have pervasive impacts on island birds, particularly on their nesting success. To conserve or restore bird populations, numerous invasive rat control or eradication projects are undertaken on islands worldwide. However, such projects represent a huge investment and the decision-making process requires proper assessment of rat impacts. Here, we assessed the influence of two sympatric invasive rats ( Rattus rattus and R. exulans ) on native bird eggs in a New Caledonian rainforest, using artificial bird-nest monitoring. A total of 178 artificial nests containing two eggs of three different sizes were placed either on the ground or 1.5 m high and monitored at the start of the birds' breeding season. Overall, 12.4% of the nests were depredated during the first 7 days. At site 1, where nests were monitored during 16 days, 41.8% of the nests were depredated. The main predator was the native crow Corvus moneduloides , responsible for 62.9% of the overall predation events. Rats were responsible for only 22.9% of the events, and ate only small and medium eggs at both heights. Our experiment suggests that in New Caledonia, predation pressure by rats strengthens overall bird-nest predation, adding to that by native predators. Experimental rat control operations may allow reduced predation pressure on nests as well as the recording of biodiversity responses after rat population reduction.

Inadequate environmental monitoring around offshore oil and gas platforms on the Grand Bank of Eastern Canada: are risks to marine birds known?

PubMed

Burke, C M; Montevecchi, W A; Wiese, F K

2012-08-15

Petroleum exploration and production on the Grand Bank of eastern Canada overlaps with productive marine habitat that supports over 40 million marine birds annually. Environmental assessments for oil and gas projects in the region predict insignificant adverse effects on marine birds from oil spills, incineration in platform flares and collisions. Limited baseline data on seasonal occupancies and a failure to quantify the nature and extent of marine bird attraction to platforms and related mortality undermines these assessments. We conducted 22 surveys to offshore platforms on the Grand Bank during 1999-2003 to measure avian associations with platforms and to determine the level of monitoring needed to assess the risks to marine birds. We document seasonal shifts in marine bird occurrences and higher densities of auks (fall) and shearwaters (summer) around platforms relative to surrounding areas. The limited temporal and spatial coverage of our surveys is more robust than existing industry monitoring efforts, yet it is still inadequate to quantify the scale of marine bird associations with platforms or their associated mortality risks. Systematic observations by independent biologists on vessels and platforms are needed to generate reliable assessments of risks to marine birds. Instead, the regulatory body for offshore oil and gas in eastern Canada (Canada - Newfoundland and Labrador Offshore Petroleum Board; C-NLOPB) supports industry self-reporting as the accepted form of environmental monitoring. Conflicting responsibilities of oil and gas regulatory agencies for both energy development and environmental monitoring are major barriers to transparency, unbiased scientific inquiry and adequate environmental protection. Similar conflicts with the oil and gas regulatory body in the United States, the former Minerals and Management Service (MMS) were identified by the U.S. President as a major contributor to the Deepwater Horizon disaster in the Gulf of Mexico. The MMS has since been restructured into the Bureau of Ocean Energy Management, (BOEM) with separate departments responsible for drilling leases and the regulation of drilling activities. Similar restructuring of the oil and gas regulatory bodies in Canada is needed for better public information, scientific investigation and environmental protection in the offshore. Copyright © 2012 Elsevier Ltd. All rights reserved.

Real-time in vivo uric acid biosensor system for biophysical monitoring of birds.

PubMed

Gumus, A; Lee, S; Karlsson, K; Gabrielson, R; Winkler, D W; Erickson, D

2014-02-21

Research on birds has long played an important role in ecological investigations, as birds are relatively easily observed, and their high metabolic rates and diurnal habits make them quite evidently responsive to changes in their environments. A mechanistic understanding of such avian responses requires a better understanding of how variation in physiological state conditions avian behavior and integrates the effects of recent environmental changes. There is a great need for sensor systems that will allow free-flying birds to interact with their environment and make unconstrained decisions about their spatial location at the same time that their physiological state is being monitored in real time. We have developed a miniature needle-based enzymatic sensor system suitable for continuous real-time amperometric monitoring of uric acid levels in unconstrained live birds. The sensor system was constructed with Pt/Ir wire and Ag/AgCl paste. Uricase enzyme was immobilized on a 0.7 mm sensing cavity of Nafion/cellulose inner membrane to minimize the influences of background interferents. The sensor response was linear from 0.05 to 0.6 mM uric acid, which spans the normal physiological range for most avian species. We developed a two-electrode potentiostat system that drives the biosensor, reads the output current, and wirelessly transmits the data. In addition to extensive characterization of the sensor and system, we also demonstrate autonomous operation of the system by collecting in vivo extracellular uric acid measurements on a domestic chicken. The results confirm our needle-type sensor system's potential for real-time monitoring of birds' physiological state. Successful application of the sensor in migratory birds could open up a new era of studying both the physiological preparation for migration and the consequences of sustained avian flight.

Testing the effectiveness of automated acoustic sensors for monitoring vocal activity of Marbled Murrelets Brachyramphus marmoratus

USGS Publications Warehouse

Cragg, Jenna L.; Burger, Alan E.; Piatt, John F.

2015-01-01

Cryptic nest sites and secretive breeding behavior make population estimates and monitoring of Marbled Murrelets Brachyramphus marmoratus difficult and expensive. Standard audio-visual and radar protocols have been refined but require intensive field time by trained personnel. We examined the detection range of automated sound recorders (Song Meters; Wildlife Acoustics Inc.) and the reliability of automated recognition models (“recognizers”) for identifying and quantifying Marbled Murrelet vocalizations during the 2011 and 2012 breeding seasons at Kodiak Island, Alaska. The detection range of murrelet calls by Song Meters was estimated to be 60 m. Recognizers detected 20 632 murrelet calls (keer and keheer) from a sample of 268 h of recordings, yielding 5 870 call series, which compared favorably with human scanning of spectrograms (on average detecting 95% of the number of call series identified by a human observer, but not necessarily the same call series). The false-negative rate (percentage of murrelet call series that the recognizers failed to detect) was 32%, mainly involving weak calls and short call series. False-positives (other sounds included by recognizers as murrelet calls) were primarily due to complex songs of other bird species, wind and rain. False-positives were lower in forest nesting habitat (48%) and highest in shrubby vegetation where calls of other birds were common (97%–99%). Acoustic recorders tracked spatial and seasonal trends in vocal activity, with higher call detections in high-quality forested habitat and during late July/early August. Automated acoustic monitoring of Marbled Murrelet calls could provide cost-effective, valuable information for assessing habitat use and temporal and spatial trends in nesting activity; reliability is dependent on careful placement of sensors to minimize false-positives and on prudent application of digital recognizers with visual checking of spectrograms.

Monitoring goals and programs of the Bureau of Land Management

Treesearch

Terrell D. Rich

1993-01-01

In 1991, the Bureau of Land Management wrote its Nongame Migratory Bird Habitat Conservation Plan to guide implementation of Partners In Flight objectives on 270 million acres of public land in the U.S. Inventory and monitoring of neotropical migrants are the most important program goals because few bird data are available over...

Modeling birds on wires.

PubMed

Aydoğdu, A; Frasca, P; D'Apice, C; Manzo, R; Thornton, J M; Gachomo, B; Wilson, T; Cheung, B; Tariq, U; Saidel, W; Piccoli, B

2017-02-21

In this paper we introduce a mathematical model to study the group dynamics of birds resting on wires. The model is agent-based and postulates attraction-repulsion forces between the interacting birds: the interactions are "topological", in the sense that they involve a given number of neighbors irrespective of their distance. The model is first mathematically analyzed and then simulated to study its main properties: we observe that the model predicts birds to be more widely spaced near the borders of each group. We compare the results from the model with experimental data, derived from the analysis of pictures of pigeons and starlings taken in New Jersey: two different image elaboration protocols allow us to establish a good agreement with the model and to quantify its main parameters. We also discuss the potential handedness of the birds, by analyzing the group organization features and the group dynamics at the arrival of new birds. Finally, we propose a more refined mathematical model that describes landing and departing birds by suitable stochastic processes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Spatial and temporal variation in marine birds in the north Gulf of Alaska: The value of marine bird monitoring within Gulf Watch Alaska

USGS Publications Warehouse

Kuletz, Kathy J.; Esler, Daniel N.

2015-01-01

Birds offer useful insights into marine ecosystems. Marine birds are responsive to spatial and temporal variation in the environment, that often originates with fluctuations in oceanographic and climatic drivers and permeates up through food webs to conspicuous top predators such as seabirds (Coyle and Pinchuk 2005, Speckman et al. 2005, Gonzales-Solis et al. 2009, Cushing et al., this report). In that way, marine birds are excellent assimilators, samplers, and indicators of the status of marine environments (Montevecchi 1993, Piatt et al. 2007b, Zador et al. 2013). Marine bird responses to dynamic marine ecosystems can be detected in a variety of metrics, including abundance, distribution, and productivity. For example, in the northern Gulf of Alaska (GOA), decadal-scale variation in oceanographic conditions has been associated with dramatic shifts in prey composition and abundance (Anderson and Piatt 1999). In turn, these shifts were more closely correlated with changes in abundance of fish-eating birds of Prince William Sound (PWS), such as pigeon guillemots (Golet et al. 2002) and marbled and Kittlitz’s murrelets (Kuletz et al. 2011a, 2011b), than in the abundance of species that primarily consume plankton or benthic prey (Agler et al. 1999, Cushing et al., this report). Birds also are responsive to anthropogenic influences in marine environments, including commercial fishing, contamination, introduction of non-native species, coastal development, offshore resource extraction, and vessel traffic. A major anthropogenic perturbation in the northern GOA was the 1989 Exxon Valdez oil spill, in which marine birds suffered high immediate mortality (Piatt and Ford 1996). Additionally, several species showed long-term evidence of declines in the oiled areas of PWS (Lance et al. 2001), as well as impacts to reproductive success years later (Golet et al. 2002). However, the degree of direct impact and vulnerability to chronic injury, which was related to exposure to lingering oil, varied widely among species (see Esler et al., this report). Research and monitoring directed at documenting the timelines and mechanisms of wildlife recovery following the Exxon Valdez oil spill led to an unprecedented understanding of oil spill effects on marine birds, as well as previously unknown information about marine bird ecology in the northern GOA. Quantifying effects of anthropogenic influences requires an understanding of variation in marine bird abundance, distribution, and productivity, in relation to naturally occurring dynamics in marine environments continued marine bird work as part of Gulf Watch Alaska will facilitate this. In addition to their value as indicators of marine conditions and anthropogenic influences, marine birds are protected under the Migratory Bird Treaty Act and are managed by the U.S. Fish and Wildlife Service (USFWS). Marine birds have high societal value from a wide variety of interests (e.g., tourism, bird watching, hunting, mythology), and are an important source of subsistence foods in Alaska (Naves and Braem 2014). Because of the conservation interest in marine birds, as well as their value for indicating the status of marine ecosystems, monitoring of marine birds is an important component of many ocean monitoring programs, including Gulf Watch Alaska.

The Tropical Ecology, Assessment and Monitoring (TEAM) Network: An early warning system for tropical rain forests.

PubMed

Rovero, Francesco; Ahumada, Jorge

2017-01-01

While there are well established early warning systems for a number of natural phenomena (e.g. earthquakes, catastrophic fires, tsunamis), we do not have an early warning system for biodiversity. Yet, we are losing species at an unprecedented rate, and this especially occurs in tropical rainforests, the biologically richest but most eroded biome on earth. Unfortunately, there is a chronic gap in standardized and pan-tropical data in tropical forests, affecting our capacity to monitor changes and anticipate future scenarios. The Tropical Ecology, Assessment and Monitoring (TEAM) Network was established to contribute addressing this issue, as it generates real time data to monitor long-term trends in tropical biodiversity and guide conservation practice. We present the Network and focus primarily on the Terrestrial Vertebrates protocol, that uses systematic camera trapping to detect forest mammals and birds, and secondarily on the Zone of Interaction protocol, that measures changes in the anthroposphere around the core monitoring area. With over 3 million images so far recorded, and managed using advanced information technology, TEAM has created the most important data set on tropical forest mammals globally. We provide examples of site-specific and global analyses that, combined with data on anthropogenic disturbance collected in the larger ecosystem where monitoring sites are, allowed us to understand the drivers of changes of target species and communities in space and time. We discuss the potential of this system as a candidate model towards setting up an early warning system that can effectively anticipate changes in coupled human-natural system, trigger management actions, and hence decrease the gap between research and management responses. In turn, TEAM produces robust biodiversity indicators that meet the requirements set by global policies such as the Aichi Biodiversity Targets. Standardization in data collection and public sharing of data in near real time are essential features of such system. Copyright © 2016 Elsevier B.V. All rights reserved.

The body grasp technique: a rapid method of removing birds from mist nets

Treesearch

C.J. Ralph

2005-01-01

Safety of birds is paramount to our efforts in monitoring birds. I describe a method that has the potential of greatly increasing the speed and safety of extracting birds from mist nets. This method involves removing the feet last, as opposed to the more traditional 'feet first' method. The "body grasp" method involves slipping the fingers around...

Student-Oriented versus Teacher-Centred: The Effect of Learning at Workstations about Birds and Bird Flight on Cognitive Achievement and Motivation

ERIC Educational Resources Information Center

Sturm, Heike; Bogner, Franz X.

2008-01-01

The study investigated cognitive and motivational effects of two educational interventions, a conventional versus a student-oriented approach. We monitored the impact on the cognitive achievement outcome and the motivation of students. Both approaches dealt with the subject of birds and bird flight; the student-oriented approach consisted of a…

Using molt cycles to categorize the age of tropical birds: an integrative new system

Treesearch

Jared D. Wolfe; Thomas B. Ryder; Peter Pyle

2010-01-01

Accurately differentiating age classes is essential for the long-term monitoring of resident New World tropical bird species. Molt and plumage criteria have long been used to accurately age temperate birds, but application of temperate age-classification models to the Neotropics has been hindered because annual life-cycle events of tropical birds do not always...

[Radar as imaging tool in ecology and conservation biology].

PubMed

Matyjasiak, Piotr

2017-01-01

Migrations and dispersal are among the most important ecological processes that shape ecosystems and influence our economy, health and safety. Movements of birds, bats and insects occur in a large spatial scale - regional, continental, or intercontinental. However, studies of these phenomena using classic methods are usually local. Breakthrough came with the development of radar technology, which enabled researchers to study animal movements in the atmosphere in a large spatial and temporal scale. The aim of this article was to present the radar imaging methods used in the research of aerial movements of birds, bats and insects. The types of radars used in research are described, and examples of the use of radar in basic research and in conservation biology are discussed. Radar visualizations are used in studies on the effect of meteorological conditions on bird migration, on spatial and temporal dynamics of movements of birds, bats and insects, and on the mechanism of orientation of migrating birds and insects. In conservation biology research radars are used in the monitoring of endangered species of birds and bats, to monitor bird activity at airports, as well as in assessing the impact of high constructions on flying birds and bats.

9 CFR 145.53 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2011 CFR

2011-01-01

... POULTRY Special Provisions for Waterfowl, Exhibition Poultry, and Game Bird Breeding Flocks and Products... typhoid infection; (vii) All poultry, including exhibition, exotic, and game birds, but excluding... examination monitoring program for game birds acceptable to the Official State Agency and approved by the...

9 CFR 145.53 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2012 CFR

2012-01-01

... POULTRY Special Provisions for Hobbyist and Exhibition Waterfowl, Exhibition Poultry, and Game Bird... typhoid infection; (vii) All poultry, including exhibition, exotic, and game birds, but excluding... examination monitoring program for game birds acceptable to the Official State Agency and approved by the...

9 CFR 145.53 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2010 CFR

2010-01-01

... POULTRY Special Provisions for Waterfowl, Exhibition Poultry, and Game Bird Breeding Flocks and Products... typhoid infection; (vii) All poultry, including exhibition, exotic, and game birds, but excluding... examination monitoring program for game birds acceptable to the Official State Agency and approved by the...

9 CFR 145.53 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2013 CFR

2013-01-01

... POULTRY Special Provisions for Hobbyist and Exhibition Waterfowl, Exhibition Poultry, and Game Bird... typhoid infection; (vii) All poultry, including exhibition, exotic, and game birds, but excluding... examination monitoring program for game birds acceptable to the Official State Agency and approved by the...

9 CFR 145.53 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2014 CFR

2014-01-01

... POULTRY Special Provisions for Hobbyist and Exhibition Waterfowl, Exhibition Poultry, and Game Bird... typhoid infection; (vii) All poultry, including exhibition, exotic, and game birds, but excluding... examination monitoring program for game birds acceptable to the Official State Agency and approved by the...

Detection of Influenza A viruses at migratory bird stopover sites in Michigan, USA.

PubMed

Lickfett, Todd M; Clark, Erica; Gehring, Thomas M; Alm, Elizabeth W

2018-01-01

Introduction: Influenza A viruses have the potential to cause devastating illness in humans and domestic poultry. Wild birds are the natural reservoirs of Influenza A viruses and migratory birds are implicated in their global dissemination. High concentrations of this virus are excreted in the faeces of infected birds and faecal contamination of shared aquatic habitats can lead to indirect transmission among birds via the faecal-oral route. The role of migratory birds in the spread of avian influenza has led to large-scale surveillance efforts of circulating avian influenza viruses through direct sampling of live and dead wild birds. Environmental monitoring of bird habitats using molecular detection methods may provide additional information on the persistence of influenza virus at migratory stopover sites distributed across large spatial scales. Materials and methods: In the current study, faecal and water samples were collected at migratory stopover sites and evaluated for Influenza A by real-time quantitative reverse transcriptase PCR. Results and Discussion: This study found that Influenza A was detected at 53% of the evaluated stopover sites, and 7% and 4.8% of the faecal and water samples, respectively, tested positive for Influenza A virus. Conclusion: Environmental monitoring detected Influenza A at stopover sites used by migratory birds.

Response of bird communities to natural disturbance

Treesearch

Michael P. Guilfoyle; Wylie C. Barrow; Paul B. Hamel; James S. Wakeley; Sammy L. King; Teny J. Antrobus

2000-01-01

In addition to providing numerous important ecological functions, bottomland hardwoods provide important habitat for many wildlife species (Harris 1989), particularly many forest interior birds (Hamel and others 1996). National monitoring efforts showed nationwide declines for many forest bird species, including forest-dependent neotropical migrants (Johnston and Hagan...

A statistically rigorous sampling design to integrate avian monitoring and management within Bird Conservation Regions.

PubMed

Pavlacky, David C; Lukacs, Paul M; Blakesley, Jennifer A; Skorkowsky, Robert C; Klute, David S; Hahn, Beth A; Dreitz, Victoria J; George, T Luke; Hanni, David J

2017-01-01

Monitoring is an essential component of wildlife management and conservation. However, the usefulness of monitoring data is often undermined by the lack of 1) coordination across organizations and regions, 2) meaningful management and conservation objectives, and 3) rigorous sampling designs. Although many improvements to avian monitoring have been discussed, the recommendations have been slow to emerge in large-scale programs. We introduce the Integrated Monitoring in Bird Conservation Regions (IMBCR) program designed to overcome the above limitations. Our objectives are to outline the development of a statistically defensible sampling design to increase the value of large-scale monitoring data and provide example applications to demonstrate the ability of the design to meet multiple conservation and management objectives. We outline the sampling process for the IMBCR program with a focus on the Badlands and Prairies Bird Conservation Region (BCR 17). We provide two examples for the Brewer's sparrow (Spizella breweri) in BCR 17 demonstrating the ability of the design to 1) determine hierarchical population responses to landscape change and 2) estimate hierarchical habitat relationships to predict the response of the Brewer's sparrow to conservation efforts at multiple spatial scales. The collaboration across organizations and regions provided economy of scale by leveraging a common data platform over large spatial scales to promote the efficient use of monitoring resources. We designed the IMBCR program to address the information needs and core conservation and management objectives of the participating partner organizations. Although it has been argued that probabilistic sampling designs are not practical for large-scale monitoring, the IMBCR program provides a precedent for implementing a statistically defensible sampling design from local to bioregional scales. We demonstrate that integrating conservation and management objectives with rigorous statistical design and analyses ensures reliable knowledge about bird populations that is relevant and integral to bird conservation at multiple scales.

A statistically rigorous sampling design to integrate avian monitoring and management within Bird Conservation Regions

PubMed Central

Hahn, Beth A.; Dreitz, Victoria J.; George, T. Luke

2017-01-01

Monitoring is an essential component of wildlife management and conservation. However, the usefulness of monitoring data is often undermined by the lack of 1) coordination across organizations and regions, 2) meaningful management and conservation objectives, and 3) rigorous sampling designs. Although many improvements to avian monitoring have been discussed, the recommendations have been slow to emerge in large-scale programs. We introduce the Integrated Monitoring in Bird Conservation Regions (IMBCR) program designed to overcome the above limitations. Our objectives are to outline the development of a statistically defensible sampling design to increase the value of large-scale monitoring data and provide example applications to demonstrate the ability of the design to meet multiple conservation and management objectives. We outline the sampling process for the IMBCR program with a focus on the Badlands and Prairies Bird Conservation Region (BCR 17). We provide two examples for the Brewer’s sparrow (Spizella breweri) in BCR 17 demonstrating the ability of the design to 1) determine hierarchical population responses to landscape change and 2) estimate hierarchical habitat relationships to predict the response of the Brewer’s sparrow to conservation efforts at multiple spatial scales. The collaboration across organizations and regions provided economy of scale by leveraging a common data platform over large spatial scales to promote the efficient use of monitoring resources. We designed the IMBCR program to address the information needs and core conservation and management objectives of the participating partner organizations. Although it has been argued that probabilistic sampling designs are not practical for large-scale monitoring, the IMBCR program provides a precedent for implementing a statistically defensible sampling design from local to bioregional scales. We demonstrate that integrating conservation and management objectives with rigorous statistical design and analyses ensures reliable knowledge about bird populations that is relevant and integral to bird conservation at multiple scales. PMID:29065128

Monitoring potential geographical distribution of four wild bird species in China

NASA Astrophysics Data System (ADS)

Dai, S.; Feng, D.; Xu, B.

2015-12-01

The outbreak of highly pathogenic avian influenza (HPAI) of the H5N1 subtype in wild birds and poultry have caught worldwide attention. To explore the association between wild bird migration and avian influenza virus transmission, we monitored potential geographical distribution of four wild bird species that might carry the avian influenza viruses in China. They are Bar-headed geese (Anser indicus), Ruddy Shelduck (Tadorna ferruginea), Whooper Swan (Cygnus cygnus) and Black-headed Gull (Larus ridibundus). They served as major reservoir of the avian influenza viruses. We used bird watching records with the precise latitude/longitude coordinates from January 2002 to August 2014, and environmental variables with a pixel resolution of 5 km × 5 km from 2002 to 2014. The study utilized maximum entropy (MaxEnt) model based on ecological niche model approaches, and got the following results: 1) MaxEnt model have good discriminatory ability with the area under the curve (AUC) of the receiver operating curve (ROC) of 0.86-0.97; 2) The four wild bird species were estimated to concentrate in the North China Plain, the middle and lower region of the Yangtze River, Qinghai Lake, Tianshan Mountain and Tarim Basin, part of Tibet Plateau, and Hengduan Mountains; 3) Radiation and the minimum temperature were found to provide the most significant information. Our findings will help to understand the spread of avian influenza viruses by wild bird migration in China, which benefits for effective monitoring strategies and prevention measures.

National Audubon society's technology initiatives for bird conservation: a summary of application development for the Christmas bird count

Treesearch

Kathy Dale

2005-01-01

Since 1998, Audubon's Christmas Bird Count (CBC) has been supported by an Internet-based data entry application that was initially designed to accommodate the traditional paper-based methods of this long-running bird monitoring program. The first efforts to computerize the data and the entry procedures have informed a planned strategy to revise the current...

Housing conditions and sacrifice protocol affect neural activity and vocal behavior in a songbird species, the zebra finch (Taeniopygia guttata).

PubMed

Elie, Julie Estelle; Soula, Hédi Antoine; Trouvé, Colette; Mathevon, Nicolas; Vignal, Clémentine

2015-12-01

Individual cages represent a widely used housing condition in laboratories. This isolation represents an impoverished physical and social environment in gregarious animals. It prevents animals from socializing, even when auditory and visual contact is maintained. Zebra finches are colonial songbirds that are widely used as laboratory animals for the study of vocal communication from brain to behavior. In this study, we investigated the effect of single housing on the vocal behavior and the brain activity of male zebra finches (Taeniopygia guttata): male birds housed in individual cages were compared to freely interacting male birds housed as a social group in a communal cage. We focused on the activity of septo-hypothalamic regions of the "social behavior network" (SBN), a set of limbic regions involved in several social behaviors in vertebrates. The activity of four structures of the SBN (BSTm, medial bed nucleus of the stria terminalis; POM, medial preoptic area; lateral septum; ventromedial hypothalamus) and one associated region (paraventricular nucleus of the hypothalamus) was assessed using immunoreactive nuclei density of the immediate early gene Zenk (egr-1). We further assessed the identity of active cell populations by labeling vasotocin (VT). Brain activity was related to behavioral activities of birds like physical and vocal interactions. We showed that individual housing modifies vocal exchanges between birds compared to communal housing. This is of particular importance in the zebra finch, a model species for the study of vocal communication. In addition, a protocol that daily removes one or two birds from the group affects differently male zebra finches depending of their housing conditions: while communally-housed males changed their vocal output, brains of individually housed males show increased Zenk labeling in non-VT cells of the BSTm and enhanced correlation of Zenk-revealed activity between the studied structures. These results show that housing conditions must gain some attention in behavioral neuroscience protocols. Copyright © 2015. Published by Elsevier SAS.

Utilizing the Cyberforest live sound system with social media to remotely conduct woodland bird censuses in Central Japan.

PubMed

Saito, Kaoru; Nakamura, Kazuhiko; Ueta, Mutsuyuki; Kurosawa, Reiko; Fujiwara, Akio; Kobayashi, Hill Hiroki; Nakayama, Masaya; Toko, Ayako; Nagahama, Kazuyo

2015-11-01

We have developed a system that streams and archives live sound from remote areas across Japan via an unmanned automatic camera. The system was used to carry out pilot bird censuses in woodland; this allowed us to examine the use of live sound transmission and the role of social media as a mediator in remote scientific monitoring. The system has been streaming sounds 8 h per day for more than five years. We demonstrated that: (1) the transmission of live sound from a remote woodland could be used effectively to monitor birds in a remote location; (2) the simultaneous involvement of several participants via Internet Relay Chat to listen to live sound transmissions could enhance the accuracy of census data collection; and (3) interactions through Twitter allowed members of the public to engage or help with the remote monitoring of birds and experience inaccessible nature through the use of novel technologies.

[Book review] Birds in Europe: Population estimates, trends and conservation status

USGS Publications Warehouse

Peterjohn, Bruce G.

2006-01-01

Effective bird conservation requires knowledge of distribution, relative abundance, and population trends at multiple geographic scales. Obtaining this information for a continental avifauna poses considerable challenges, especially in Europe with its 52 countries, numerous languages and cultures, and disparate resources available for monitoring bird populations within each country. Synthesizing the available information on the status and trends of all European birds into a single volume is an enormous yet essential task necessary to direct bird conservation activities across the continent.

Unidirectional pulmonary airflow patterns in the savannah monitor lizard.

PubMed

Schachner, Emma R; Cieri, Robert L; Butler, James P; Farmer, C G

2014-02-20

The unidirectional airflow patterns in the lungs of birds have long been considered a unique and specialized trait associated with the oxygen demands of flying, their endothermic metabolism and unusual pulmonary architecture. However, the discovery of similar flow patterns in the lungs of crocodilians indicates that this character is probably ancestral for all archosaurs--the group that includes extant birds and crocodilians as well as their extinct relatives, such as pterosaurs and dinosaurs. Unidirectional flow in birds results from aerodynamic valves, rather than from sphincters or other physical mechanisms, and similar aerodynamic valves seem to be present in crocodilians. The anatomical and developmental similarities in the primary and secondary bronchi of birds and crocodilians suggest that these structures and airflow patterns may be homologous. The origin of this pattern is at least as old as the split between crocodilians and birds, which occurred in the Triassic period. Alternatively, this pattern of flow may be even older; this hypothesis can be tested by investigating patterns of airflow in members of the outgroup to birds and crocodilians, the Lepidosauromorpha (tuatara, lizards and snakes). Here we demonstrate region-specific unidirectional airflow in the lungs of the savannah monitor lizard (Varanus exanthematicus). The presence of unidirectional flow in the lungs of V. exanthematicus thus gives rise to two possible evolutionary scenarios: either unidirectional airflow evolved independently in archosaurs and monitor lizards, or these flow patterns are homologous in archosaurs and V. exanthematicus, having evolved only once in ancestral diapsids (the clade encompassing snakes, lizards, crocodilians and birds). If unidirectional airflow is plesiomorphic for Diapsida, this respiratory character can be reconstructed for extinct diapsids, and evolved in a small ectothermic tetrapod during the Palaeozoic era at least a hundred million years before the origin of birds.

Invasive rats strengthen predation pressure on bird eggs in a South Pacific island rainforest

PubMed Central

Bourguet, Edouard; De Meringo, Hélène; Millon, Alexandre; Vidal, Eric

2017-01-01

Abstract Invasive rats (Rattus spp.) are known to have pervasive impacts on island birds, particularly on their nesting success. To conserve or restore bird populations, numerous invasive rat control or eradication projects are undertaken on islands worldwide. However, such projects represent a huge investment and the decision-making process requires proper assessment of rat impacts. Here, we assessed the influence of two sympatric invasive rats (Rattus rattus and R. exulans) on native bird eggs in a New Caledonian rainforest, using artificial bird-nest monitoring. A total of 178 artificial nests containing two eggs of three different sizes were placed either on the ground or 1.5 m high and monitored at the start of the birds’ breeding season. Overall, 12.4% of the nests were depredated during the first 7 days. At site 1, where nests were monitored during 16 days, 41.8% of the nests were depredated. The main predator was the native crow Corvus moneduloides, responsible for 62.9% of the overall predation events. Rats were responsible for only 22.9% of the events, and ate only small and medium eggs at both heights. Our experiment suggests that in New Caledonia, predation pressure by rats strengthens overall bird-nest predation, adding to that by native predators. Experimental rat control operations may allow reduced predation pressure on nests as well as the recording of biodiversity responses after rat population reduction. PMID:29492018

Epidemic Spread of Usutu Virus in Southwest Germany in 2011 to 2013 and Monitoring of Wild Birds for Usutu and West Nile Viruses.

PubMed

Ziegler, Ute; Jöst, Hanna; Müller, Kerstin; Fischer, Dominik; Rinder, Monika; Tietze, Dieter Thomas; Danner, Klaus-Jürgen; Becker, Norbert; Skuballa, Jasmin; Hamann, Hans-Peter; Bosch, Stefan; Fast, Christine; Eiden, Martin; Schmidt-Chanasit, Jonas; Groschup, Martin H

2015-08-01

Mosquito-borne viruses are becoming an increasing threat for Europe. One of these viruses is Usutu virus (USUV), a single-stranded RNA virus belonging to the Japanese encephalitis virus group within the family Flaviviridae. Since the occurrence of USUV among wild birds in June, 2011, infected Blackbirds (Turdus merula) have frequently been found dead in southwest Germany, cumulating in a massive die-off. Moreover, other bird species (Strigiformes) in this region have been affected. In a first study, 209 of over 600 dead birds (wild birds and birds kept in aviaries) collected from 2011 to 2013 carried USUV, more than 88% of them Blackbirds. USUV had already been detected in 2010, one year before the epizooty, in a mosquito-based surveillance program in Germany. The main epidemic area of the USUV outbreak in wild birds in southwest Germany has been similar for the last three years. In a second study during 2011 to 2013, 902 live migratory and resident birds (representing 87 bird species belonging to 14 bird orders) from four different sampling sites were bled and tested serologically and by qPCR for West Nile virus (WNV) and USUV infections. No USUV or WNV genomes were detected. Some migratory birds (mainly long-distance migrants and some partial migrants) carried neutralizing antibodies against WNV as discriminated by USUV and WNV cross-neutralization tests. Only few resident birds showed relevant USUV-specific neutralizing antibodies. The occurrence of USUV in the Upper Rhine valley area of southwest Germany is a proof of principle for the incursion and spread of other arthropod-borne (arbo)-viruses along these routes. Therefore, monitoring studies in birds and mosquitoes for the presence of arboviruses in these areas are indispensable.

Monitoring Finnish Owls 1982-1996: methods and results

Treesearch

Pertti Saurola

1997-01-01

In 1982, the Raptor Grid, a nation-wide program for monitoring birds of prey was started by the Finnish Ringing Centre. Voluntary banders were asked to select a 10 x 10 km study plot and find annually all active nests or at least occupied territories of birds of prey from their study plot (annual total averaged 120). Since 1986, additional...

Influence of Point Count Length and Repeated Visits on Habitat Model Performance

Treesearch

Randy Dettmers; David A. Buehler; John G. Bartlett; Nathan A. Klaus

1999-01-01

Point counts are commonly used to monitor bird populations, and a substantial amount of research has investigated how conducting counts for different lengths of time affects the accuracy of these counts and the subsequent ability to monitor changes in population trends. However, little work has been done io assess how changes in count duration affect bird-habitat...

Integrating the distributed data resources of the bird monitoring community using information technology strategies

Treesearch

Steve Kelling; Craig Stewart

2005-01-01

An increasing number of bird monitoring projects are assembling massive quantities of data into numerous decentralized and locally administered storage systems. These data sources have enormous significance to a wide range of disciplines, but knowing that they exist and gaining access to them is difficult if not impossible. Attempts are being made to organize these...

Regional breeding bird monitoring in Western Great Lakes National Forests

Treesearch

JoAnn Hanowski; Jim Lind; Nick Danz; Gerald Niemi; Tim Jones

2005-01-01

We established breeding bird monitoring programs in three National Forests in northern Minnesota (Superior and Chippewa in 1991) and northern Wisconsin (Chequamegon in 1992). A total of 134, 169, and 132 stands (1,272 survey points) have been surveyed annually in these forests through 2002. We examined trends in relative abundance for 53 species in the Chequamegon, 51...

Monitoring Puerto Rican avifauna using roadside surveys

Treesearch

Keith L. Pardieck; Bruce G. Peterjohn

2005-01-01

In 1997 we began investigating the use of roadside point counts to monitor the long-term status and trends of Puerto Rican bird populations. If such a methodology proves feasible it may provide the empirical data needed for the development of sound conservation plans for the island’s avifauna in much the same way that North American Breeding Bird Survey data...

Bio-medical telemetry: Sensing and transmitting biological information from animals to man

NASA Technical Reports Server (NTRS)

Mackay, S.

1971-01-01

The application of small radio transmitters for monitoring biological activity in animals and humans is discussed. The microminiaturization of the electronic transmitters makes it possible for them to be swallowed and to operate within the body with no external connections. The small size also makes it possible for the transmitters to be surgically implanted or carried externally to monitor specific bodily functions. The use of satellites to monitor the activity of birds and animals carrying small transmitters is described. Photographs of birds, fish, and reptiles which were equipped with miniature electronic monitors are provided.

Development of an intelligent hydroinformatic system for real-time monitoring and assessment of civil infrastructure

NASA Astrophysics Data System (ADS)

Cahill, Paul; Michalis, Panagiotis; Solman, Hrvoje; Kerin, Igor; Bekic, Damir; Pakrashi, Vikram; McKeogh, Eamon

2017-04-01

With the effects of climate change becoming more apparent, extreme weather events are now occurring with greater frequency throughout the world. Such extreme events have resulted in increased high intensity flood events which are having devastating consequences on hydro-structures, especially on bridge infrastructure. The remote and often inaccessible nature of such bridges makes inspections problematic, a major concern if safety assessments are required during and after extreme flood events. A solution to this is the introduction of smart, low cost sensing solutions at locations susceptible to hydro-hazards. Such solutions can provide real-time information on the health of the bridge and its environments, with such information aiding in the mitigation of the risks associated with extreme weather events. This study presents the development of an intelligent system for remote, real-time monitoring of hydro-hazards to bridge infrastructure. The solution consists of two types of remote monitoring stations which have the capacity to monitor environmental conditions and provide real-time information to a centralized, big data database solution, from which an intelligent decision support system will accommodate the results to control and manage bridge, river and catchment assets. The first device developed as part of the system is the Weather Information Logging Device (WILD), which monitors rainfall, temperature and air and soil moisture content. The ability of the WILD to monitor rainfall in real time enables flood early warning alerts and predictive river flow conditions, thereby enabling decision makers the ability to make timely and effective decisions about critical infrastructures in advance of extreme flood events. The WILD is complemented by a second monitoring device, the Bridge Information Recording Device (BIRD), which monitors water levels at a given location in real-time. The monitoring of water levels of a river allows for, among other applications, hydraulic modelling to assess the likely impact that severe flood events will have on a bridges foundation, particularly due to scour. The process of reading and validating data from the WILD and BIRD buffer servers is outlined, as is the transmission protocol used for the sending of recorded data to a centralized repository for further use and analysis. Finally, the development of a centralized repository for the collection of data from the WILD and BIRD devices is presented. Eventually the big data solution would be used to receive, store and send the monitored data to the hydrological models, whether existing or developed, and the results would be transmitted to the intelligent decision support system based on a web-based platform, for managing, planning and executing data, processes and procedures for bridge assets. The development of intelligent hydroinformatic system is an important tool for the protection of key infrastructure assets from the increasingly common effects of climate change. Acknowledgement The authors wish to acknowledge the financial support of the European Commission, through the Marie Curie Industry-Academia Partnership and Pathways Network BRIDGE SMS (Intelligent Bridge Assessment Maintenance and Management System) - FP7-People-2013-IAPP- 612517.

A checklist approach for monitoring neotropical migrant birds: Twenty-year trends in birds of Quebec Using EPOQ

Treesearch

Andre Cyr; Jacques Larivee

1993-01-01

EPOQ (Studies of Bird Populations in Quebec) is a data base on birds of Quebec containing more than 2.2 million records of observations recorded on 158,000 checklists from 3,600 observation sites since 1950. Trends were measured for each of four subsets of EPOQ data between 1970 and 1989 (all year, spring (April-May), summer (June-July), and fall (August-October) as...

Experimental Design Considerations for Establishing an Off-Road, Habitat-Specific Bird Monitoring Program Using Point Counts

Treesearch

JoAnn M. Hanowski; Gerald J. Niemi

1995-01-01

We established bird monitoring programs in two regions of Minnesota: the Chippewa National Forest and the Superior National Forest. The experimental design defined forest cover types as strata in which samples of forest stands were randomly selected. Subsamples (3 point counts) were placed in each stand to maximize field effort and to assess within-stand and between-...

Analysis of long-term forest bird monitoring data from national forests of the western Great Lakes Region

Treesearch

Gerald J. Niemi; Robert W. Howe; Brian R. Sturtevant; Linda R. Parker; Alexis R. Grinde; Nicholas P. Danz; Mark D. Nelson; Edmund J. Zlonis; Nicholas G. Walton; Erin E. Gnass Giese; Sue M. Lietz

2016-01-01

Breeding bird communities in forests of the western Great Lakes region are among the most diverse in North America, but the forest environment in this region has changed dramatically during the past 150 years. To address concerns about loss of biodiversity due to ongoing forest harvesting and to better inform forest planning, researchers have systematically monitored...

Long-term decline of a winter-resident bird community in Puerto Rico

Treesearch

J. Faaborg; W. J. Arendt; J. D. Toms; K. M. Dugger; W. A. Cox; M. Canals Mora

2013-01-01

Despite concern expressed two decades ago, there has been little recent discussion about continuing declines of migrant bird populations. Monitoring efforts have been focused almost exclusively on the breeding grounds. We describe the long-term decline of a winter-resident bird population in Guanica Commonwealth Forest, Puerto Rico, one of the last remaining tracts of...

Long-term monitoring of fleshy fruit and hard mast production and seasonal bird distribution at the Savannah River Site, South Carolina.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Greenberg, Cathryn, H.; Levey, Douglas J.

2009-06-15

A final report of Fruit and hard mast production in five habitat types at SRS with a comparison of fruit consumption by fledgling versus adult birds at SRS and Relative importance of fruit, seeds, and insects in the diets of overwintering birds at SRS.

Modeling nest survival of cavity-nesting birds in relation to postfire salvage logging

Treesearch

Vicki Saab; Robin E. Russell; Jay Rotella; Jonathan G. Dudley

2011-01-01

Salvage logging practices in recently burned forests often have direct effects on species associated with dead trees, particularly cavity-nesting birds. As such, evaluation of postfire management practices on nest survival rates of cavity nesters is necessary for determining conservation strategies. We monitored 1,797 nests of 6 cavity-nesting bird species: Lewis'...

Influenza A Virus Infections in Land Birds, People’s Republic of China

PubMed Central

Bush, Sarah E.; Spackman, Erica; Swayne, David E.; Ip, Hon S.

2008-01-01

Water birds are considered the reservoir for avian influenza viruses. We examined this assumption by sampling and real-time reverse transcription–PCR testing of 939 Asian land birds of 153 species. Influenza A infection was found, particularly among migratory species. Surveillance programs for monitoring spread of these viruses need to be redesigned. PMID:18826836

Monitoring goals and programs of the U.S. Fish and Wildlife Service

Treesearch

John R. Sauer

1993-01-01

The United States Fish and Wildlife Service coordinates several surveys that collect information on the population status of migratory birds in North America. The North American Breeding Bird Survey is the primary source of population information on nongame birds during the breeding season, and waterfowl surveys are conducted during breeding and wintering seasons. The...

The winter bird survey of central Maryland, U.S.A

USGS Publications Warehouse

Robbins, C.S.; Bystrak, D.

1974-01-01

A method for monitoring changes in winter bird populations was tested in central Maryland in the winters of 1970, 1971 and 1972. A systematic sample of 41 transects was established to sample an area of 6150 sq. km. Each transect, located at the center of a standard 7 1/2-minute topographic map, was 8 km in length and approximately square in shape. Coverage began at local sunrise on any one day from 15 January to 15 February, and was completed in exactly 4 hours. Birds seen or heard within one-fourth mile (0.40) km were recorded separately for each hour, and those identified at a greater distance were entered in a separate column. The mean number of species per route was 29. Ten species showed a statistically significant change from 1970 to 1971 and 8 from 1971 to 1972. The Winter Bird Survey results were compared with the results from the Audubon Society's Christmas Bird Count in the same area. Close correlation was found between the two surveys, but in general the Winter Bird Survey totals are higher except for species that frequent feeding trays and those that are conspicuous along roadsides. The Winter Bird Survey method shows much promise as a means of world-wide monitoring of bird populations; it is urged that field tests be conducted on other continents.

Marine oil pollution and beached bird surveys: the development of a sensitive monitoring instrument.

PubMed

Camphuysen, C J; Heubeck, M

2001-01-01

One of the most obvious adverse effects of (chronic) pollution of the world's oceans and seas with mineral oil is the mortality of seabirds. Systematic surveys of beachcast corpses of birds ('beached bird surveys') have been used in many parts of the world to document the effect of oil pollution, but particularly so in Western Europe and in parts of North America. In this paper, the history, current schemes, methods and possible (future) use of beached bird surveys are described and discussed, because the value of beached bird surveys has been hotly disputed. Oil pollution is known since the late 19th century, while the first beached bird surveys were conducted in the 1920s. Due to the amount of man-power needed for these surveys, most beached bird survey programs thrived only through the work of a large number of volunteers. However, most programs have resulted in substantial amounts of high quality data, often covering many consecutive years. One of the main shortcomings of many beached bird survey programs was the emphasis on stranded bird numbers rather than on relative measures, such as oil rates (percentage of corpses oiled of all corpses found). Sources of pollution, particularly so in chronically polluted regions such as the North Sea, the Baltic, the Mediterranean and the waters around Newfoundland, are insufficiently known, but could be studied through a sampling program connected to beached bird surveys. Suggestions for standardization of methods are presented, which could lead to a global and highly sensitive monitoring instrument of marine oil pollution.

Wintering birds avoid warm sunshine: predation and the costs of foraging in sunlight.

PubMed

Carr, Jennie M; Lima, Steven L

2014-03-01

Wintering birds can gain significant thermal benefits by foraging in direct sunlight. However, exposure to bright sunlight might make birds easier to detect by predators and may also cause visual glare that can reduce a bird's ability to monitor the environment. Thus, birds likely experience a trade-off between the thermal benefits and predation-related costs of foraging in direct sunlight. To examine this possible thermoregulation-predation trade-off, we monitored the behavior of mixed-species flocks of wintering emberizid sparrows foraging in alternating strips of sunlight and shade. On average, these sparrows routinely preferred to forage in the shade, despite midday air temperatures as much as 30 °C below their thermoneutral zone. This preference for shade was strongest at relatively high temperatures when the thermal benefits of foraging in sunlight were reduced, suggesting a thermoregulation-predation trade-off. Glare could be reduced if birds faced away from the sun while feeding in direct sunlight, but we found that foraging birds tended to face southward (the direction of the sun). We speculate that other factors, such as the likely direction of predator approach, may explain this southerly orientation, particularly if predators use solar glare to their advantage during an attack. This interpretation is supported by the fact that birds had the weakest southerly orientation on cloudy days. Wintering birds may generally avoid foraging in direct sunlight to minimize their risk of predation. However, given the thermal benefits of sunshine, such birds may benefit from foraging in habitats that provide a mosaic of sunlit and shaded microhabitats.

Range size and extinction risk in forest birds.

PubMed

Harris, Grant; Pimm, Stuart L

2008-02-01

Small geographical range size is the single best predictor of threat of extinction in terrestrial species. Knowing how small a species' range has to be before authorities consider it threatened with extinction would allow prediction of a species' risk from continued deforestation and warming climates and provide a baseline for conservation and management strategies aspiring to mitigate these threats. To determine the threshold at which forest-dependent bird species become threatened with extinction, we compared the range sizes of threatened and nonthreatened species. In doing so, we present a simple, repeatable, and practical protocol to quantify range size. We started with species' ranges published in field guides or comparable sources. We then trimmed these ranges, that is, we included only those parts of the ranges that met the species' requirements of elevation and types of forest preferred. Finally, we further trimmed the ranges to the amount of forest cover that remains. This protocol generated an estimate of the remaining suitable range for each species. We compared these range estimates with those from the World Conservation Union Red List. We used the smaller of the two estimates to determine the threshold, 11,000 km2, below which birds should be considered threatened. Species considered threatened that have larger ranges than this qualified under other (nonspatial) red list criteria. We identified a suite of species (18) that have not yet qualified as threatened but that have perilously small ranges--about 11% of the nonthreatened birds we analyzed. These birds are likely at risk of extinction and reevaluation of their status is urgently needed.

A Watershed-Scale Survey for Stream-Foraging Birds in Northern California

Treesearch

Sherri L. Miller; C. John Ralph

2005-01-01

Our objective was to develop a survey technique and watershed-scale design to monitor trends of population size and habitat associations in stream-foraging birds. The resulting methods and design will be used to examine the efficacy of quantifying the association of stream and watershed quality with bird abundance. We surveyed 60 randomly selected 2-km stream reaches...

A retrospective perspective: evaluating population changes by repeating historic bird surveys

Treesearch

Lawrence D. Igl; Douglas H. Johnson

2005-01-01

Acquiring an accurate picture of the changes in bird populations often involves a trade-off between the time and effort required to complete the surveys and the number of years spent surveying the bird populations. An alternative approach to long-term monitoring efforts is to collect current data and contrast those with data collected earlier in a similar fashion on...

Bird checklist, Guánica Biosphere Reserve, Puerto Rico

Treesearch

Wayne J. Arendt; John Faaborg; Miguel Canals; Jerry Bauer

2015-01-01

This research note compiles 43 years of research and monitoring data to produce the first comprehensive checklist of the dry forest avian community found within the Guánica Biosphere Reserve. We provide an overview of the reserve along with sighting locales, a list of 185 birds with their resident status and abundance, and a list of the available bird habitats....

Comparison of methods for estimating bird abundance and trends from historical count data

Treesearch

Frank R. Thompson; Frank A. La Sorte

2008-01-01

The use of bird counts as indices has come under increasing scrutiny because assumptions concerning detection probabilities may not be met, but there also seems to be some resistance to use of model-based approaches to estimating abundance. We used data from the United States Forest Service, Southern Region bird monitoring program to compare several common approaches...

Maximizing detection probability of Wetland-dependent birds during point-count surveys in northwestern Florida

USGS Publications Warehouse

Nadeau, C.P.; Conway, C.J.; Smith, B.S.; Lewis, T.E.

2008-01-01

We conducted 262 call-broadcast point-count surveys (1-6 replicate surveys on each of 62 points) using standardized North American Marsh Bird Monitoring Protocols between 31 May and 7 July 2006 on St. Vincent National Wildlife Refuge, an island off the northwest coast of Florida. We conducted double-blind multiple-observer surveys, paired morning and evening surveys, and paired morning and night surveys to examine the influence of call-broadcast and time of day on detection probability. Observer detection probability for all species pooled was 75% and was similar between passive (69%) and call-broadcast (65%) periods. Detection probability was higher on morning than evening (t = 3.0, P = 0.030) or night (t = 3.4, P = 0.042) surveys when we pooled all species. Detection probability was higher (but not significant for all species) on morning compared to evening or night surveys for all five focal species detected on surveys: Least Bittern (Ixobrychus exilis), Clapper Rail (Rallus longirostris), Purple Gallinule (Porphyrula martinica), Common Moorhen (Gallinula chloropus), and American Coot (Fulica americana). We detected more Least Bitterns (t = 2.4, P = 0.064) and Common Moorhens (t = 2.8, P = 0.026) on morning than evening surveys, and more Clapper Rails (t = 5.1, P = 0.014) on morning than night surveys.

Monitoring is not enough: on the need for a model-based approach to migratory bird management

USGS Publications Warehouse

Nichols, J.D.; Bonney, Rick; Pashley, David N.; Cooper, Robert; Niles, Larry

2000-01-01

Informed management requires information about system state and about effects of potential management actions on system state. Population monitoring can provide the needed information about system state, as well as information that can be used to investigate effects of management actions. Three methods for investigating effects of management on bird populations are (1) retrospective analysis, (2) formal experimentation and constrained-design studies, and (3) adaptive management. Retrospective analyses provide weak inferences, regardless of the quality of the monitoring data. The active use of monitoring data in experimental or constrained-design studies or in adaptive management is recommended. Under both approaches, learning occurs via the comparison of estimates from the monitoring program with predictions from competing management models.

Population trends of native Hawaiian forest birds, 1976–2008: the data and statistical analyses

USGS Publications Warehouse

Camp, Richard J.; Gorresen, P. Marcos; Pratt, Thane K.; Woodworth, Bethany L.

2009-01-01

The Hawaii Forest Bird Interagency Database Project has produced a centralized database of forest bird survey data collected in Hawai`i since the mid-1970s. The database contains over 1.1 million bird observation records of 90 species from almost 600 surveys on the main Hawaiian  Islands—a dataset including nearly all surveys from that period. The primary objective has been to determine the status and trends of native Hawaiian forest birds derived from this comprehensive dataset. We generated species-specific density estimates from each survey and tested for changes in population densities over the longest possible temporal period. Although this cumulative data set seems enormous and represents the best available information on status of Hawaiian forest birds, detecting meaningful population distribution, density, and trends for forest birds in Hawai`i has been difficult. These population parameters are best derived from long-term, large-scale, standardized monitoring programs. The basis for long-term population monitoring in Hawai`i was established by the Hawaii Forest Bird Survey of 1976-1983 (Scott et al. 1986). Since then, however, only key areas have been resurveyed, primarily to monitor rare species. The majority of surveys since the early 1980s have been conducted by numerous, independent programs, resulting in some inconsistencies in methodology and sampling that in some cases has been intermittent and usually at limited scale (temporally or spatially). Thus, despite the consolidation of data into a centralized database, our understanding of population patterns is rather limited, especially at the regional and landscape scales. To rectify their deficiency, we present a framework to improve the understanding of forest bird trends in Hawai`i through an overarching monitoring design that allocates sampling at appropriate regional and temporal scales. Despite the limitations of the current monitoring effort, important generalities stand out vividly from the multiplicity of species-specific trends. Overall, in marginal habitats the Hawaiian passerine fauna continues to decline, with populations of most species shrinking in size and distribution. Since the early 1980s, 10 species that were rare at the time may now be extinct, although one, the `Alalā (Corvus hawaiiensis), survives in captivity. Dedicated search effort for the remaining nine species has been inadequate. Of the 22 species remaining, eight have declined, five appear to be stable, two are increasing, and the trend for seven species is unclear. On the bright side, native passerines, including endangered species, appear to be stable or increasing in areas with large tracts of native forest above 1,500 m elevation, even while decreasing in more fragmented or disturbed habitats, particularly at lower elevation. For example, all eight native species resident at Hakalau Forest National Wildlife Refuge have shown stable trends or significant increases in density over the long-term. Thus, native birds are ever more restricted to high-elevation forest and woodland refugia. It is these upland habitats that require sustained and all-out restoration to prevent further extinctions of Hawaiian forest birds.

Developing an automated risk management tool to minimize bird and bat mortality at wind facilities.

PubMed

Robinson Willmott, Julia; Forcey, Greg M; Hooton, Lauren A

2015-11-01

A scarcity of baseline data is a significant barrier to understanding and mitigating potential impacts of offshore development on birds and bats. Difficult and sometimes unpredictable conditions coupled with high expense make gathering such data a challenge. The Acoustic and Thermographic Offshore Monitoring (ATOM) system combines thermal imaging with acoustic and ultrasound sensors to continuously monitor bird and bat abundance, flight height, direction, and speed. ATOM's development and potential capabilities are discussed, and illustrated using onshore and offshore test data obtained over 16 months in the eastern USA. Offshore deployment demonstrated birds tending to fly into winds and activity declining sharply in winds >10 km h(-1). Passerines showed distinct seasonal changes in flight bearing and flew higher than non-passerines. ATOM data could be used to automatically shut down wind turbines to minimize collision mortality while simultaneously providing information for modeling activity in relation to weather and season.

Temporal trends in metal pollution: using bird excrement as indicator.

PubMed

Berglund, Åsa M M; Rainio, Miia J; Eeva, Tapio

2015-01-01

Past mining and smelting activities have resulted in metal polluted environments all over the world, but long-term monitoring data is often scarce, especially in higher trophic levels. In this study we used bird (Parus major and Ficedula hypoleuca) excrement to monitor metal pollution in the terrestrial environment following 16 years of continuously reduced emissions from a copper/nickel smelter in Finland. In the early 1990s, lead and cadmium concentrations dropped significantly in excrement, but the reduction did not directly reflect the changes in atmospheric emission from the smelter. This is likely due to a continuous contribution of metals also from the soil pool. We conclude that bird excrement can be used to assess changes in the environment as a whole but not specifically changes in atmospheric emission. Inter-annual variation in excrement concentration of especially copper and nickel demonstrates the importance of long-term monitoring to discern significant trends.

Temporal Trends in Metal Pollution: Using Bird Excrement as Indicator

PubMed Central

Berglund, Åsa M. M.; Rainio, Miia J.; Eeva, Tapio

2015-01-01

Past mining and smelting activities have resulted in metal polluted environments all over the world, but long-term monitoring data is often scarce, especially in higher trophic levels. In this study we used bird (Parus major and Ficedula hypoleuca) excrement to monitor metal pollution in the terrestrial environment following 16 years of continuously reduced emissions from a copper/nickel smelter in Finland. In the early 1990s, lead and cadmium concentrations dropped significantly in excrement, but the reduction did not directly reflect the changes in atmospheric emission from the smelter. This is likely due to a continuous contribution of metals also from the soil pool. We conclude that bird excrement can be used to assess changes in the environment as a whole but not specifically changes in atmospheric emission. Inter-annual variation in excrement concentration of especially copper and nickel demonstrates the importance of long-term monitoring to discern significant trends. PMID:25680108

[Study on a collagenase protocol to extract DNA from remnant feathers in edible bird's nest].

PubMed

Wang, Ling-Li; Chen, Nian; Zhang, Wei-Wei; Wu, Guo-Hong; Lai, Xiao-Ping

2013-08-01

To establish a method for extracting genomic DNA from rudimental bird feather from the precious edible bird's nest (EBN) harvested from the swiftlet cave. Observed the EBN using endoscopic and studied the influence of adding collagenase on the extracting yield of DNA. PCR amplification and sequencing for the extraction was also conducted. Collagenase was used in addition to protease K which could substantively increase the DNA yield. The DNA extracted by this method could be used for PCR and other molecular biology analyses. This method can be applied to identify the species types in biological products, especially for animal tissue materials that rich in collagen.

As the Egg Turns: Monitoring Egg Attendance Behavior in Wild Birds Using Novel Data Logging Technology

PubMed Central

Shaffer, Scott A.; Clatterbuck, Corey A.; Kelsey, Emma C.; Naiman, Alex D.; Young, Lindsay C.; VanderWerf, Eric A.; Warzybok, Pete; Bradley, Russell; Jahncke, Jaime; Bower, Geoff C.

2014-01-01

Egg turning is unique to birds and critical for embryonic development in most avian species. Technology that can measure changes in egg orientation and temperature at fine temporal scales (1 Hz) was neither readily available nor small enough to fit into artificial eggs until recently. Here we show the utility of novel miniature data loggers equipped with 3-axis (i.e., triaxial) accelerometers, magnetometers, and a temperature thermistor to study egg turning behavior in free-ranging birds. Artificial eggs containing egg loggers were deployed in the nests of three seabird species for 1–7 days of continuous monitoring. These species (1) turned their eggs more frequently (up to 6.5 turns h−1) than previously reported for other species, but angular changes were often small (1–10° most common), (2) displayed similar mean turning rates (ca. 2 turns h−1) despite major differences in reproductive ecology, and (3) demonstrated distinct diurnal cycling in egg temperatures that varied between 1.4 and 2.4°C. These novel egg loggers revealed high-resolution, three-dimensional egg turning behavior heretofore never measured in wild birds. This new form of biotechnology has broad applicability for addressing fundamental questions in avian breeding ecology, life history, and development, and can be used as a tool to monitor birds that are sensitive to disturbance while breeding. PMID:24887441

Contrasting changes in the abundance and diversity of North American bird assemblages from 1971 to 2010.

PubMed

Schipper, Aafke M; Belmaker, Jonathan; de Miranda, Murilo Dantas; Navarro, Laetitia M; Böhning-Gaese, Katrin; Costello, Mark J; Dornelas, Maria; Foppen, Ruud; Hortal, Joaquín; Huijbregts, Mark A J; Martín-López, Berta; Pettorelli, Nathalie; Queiroz, Cibele; Rossberg, Axel G; Santini, Luca; Schiffers, Katja; Steinmann, Zoran J N; Visconti, Piero; Rondinini, Carlo; Pereira, Henrique M

2016-12-01

Although it is generally recognized that global biodiversity is declining, few studies have examined long-term changes in multiple biodiversity dimensions simultaneously. In this study, we quantified and compared temporal changes in the abundance, taxonomic diversity, functional diversity, and phylogenetic diversity of bird assemblages, using roadside monitoring data of the North American Breeding Bird Survey from 1971 to 2010. We calculated 12 abundance and diversity metrics based on 5-year average abundances of 519 species for each of 768 monitoring routes. We did this for all bird species together as well as for four subgroups based on breeding habitat affinity (grassland, woodland, wetland, and shrubland breeders). The majority of the biodiversity metrics increased or remained constant over the study period, whereas the overall abundance of birds showed a pronounced decrease, primarily driven by declines of the most abundant species. These results highlight how stable or even increasing metrics of taxonomic, functional, or phylogenetic diversity may occur in parallel with substantial losses of individuals. We further found that patterns of change differed among the species subgroups, with both abundance and diversity increasing for woodland birds and decreasing for grassland breeders. The contrasting changes between abundance and diversity and among the breeding habitat groups underscore the relevance of a multifaceted approach to measuring biodiversity change. Our findings further stress the importance of monitoring the overall abundance of individuals in addition to metrics of taxonomic, functional, or phylogenetic diversity, thus confirming the importance of population abundance as an essential biodiversity variable. © 2016 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Detection, monitoring, and quantitative analysis of wildfires with the BIRD satellite

NASA Astrophysics Data System (ADS)

Oertel, Dieter A.; Briess, Klaus; Lorenz, Eckehard; Skrbek, Wolfgang; Zhukov, Boris

2004-02-01

Increasing concern about environment and interest to avoid losses led to growing demands on space borne fire detection, monitoring and quantitative parameter estimation of wildfires. The global change research community intends to quantify the amount of gaseous and particulate matter emitted from vegetation fires, peat fires and coal seam fires. The DLR Institute of Space Sensor Technology and Planetary Exploration (Berlin-Adlershof) developed a small satellite called BIRD (Bi-spectral Infrared Detection) which carries a sensor package specially designed for fire detection. BIRD was launched as a piggy-back satellite on October 22, 2001 with ISRO"s Polar Satellite Launch Vehicle (PSLV). It is circling the Earth on a polar and sun-synchronous orbit at an altitude of 572 km and it is providing unique data for detailed analysis of high temperature events on Earth surface. The BIRD sensor package is dedicated for high resolution and reliable fire recognition. Active fire analysis is possible in the sub-pixel domain. The leading channel for fire detection and monitoring is the MIR channel at 3.8 μm. The rejection of false alarms is based on procedures using MIR/NIR (Middle Infra Red/Near Infra Red) and MIR/TIR (Middle Infra Red/Thermal Infra Red) radiance ratio thresholds. Unique results of BIRD wildfire detection and analysis over fire prone regions in Australia and Asia will be presented. BIRD successfully demonstrates innovative fire recognition technology for small satellites which permit to retrieve quantitative characteristics of active burning wildfires, such as the equivalent fire temperature, fire area, radiative energy release, fire front length and fire front strength.

Using heronry birds to monitor urbanization impacts: a case study of painted stork Mycteria leucocephala nesting in the Delhi Zoo, India.

PubMed

Urfi, Abdul Jamil

2010-03-01

Although urbanization is a frequently cited cause of biodiversity loss (Czech and Krausman 1997) our understanding about urban ecology is severely limited (Marzluff et al. 2001). Birds are popular bio-indicators of environmental change because they are ecologically versatile, their populations as well as select fitness parameters can be conveniently monitored, often with the voluntary involvement of local nature enthusiasts across large geographical scales, and their presence/absence in a particular area is consequential (Bibby et al. 1992; Urfi 2004). In India, while several studies have focused on changes in bird populations and distributions in natural habitats (Urfi et al. 2005), very few have actually attempted to study either the impacts of urbanization on birds or how different species have adjusted to environmental change. However, many Indian cities offer foraging and nesting habitat for birds, especially colonial waterbirds such as stork, ibis, spoonbill, heron, egret, cormorant, and spoonbill. Some notable examples in this regard are Piele Gardens in Bhavnagar city (Parasharya and Naik 1990), Karanji Tank in Mysore (Jamgaonkar et al. 1994) and the National Zoological Park (hence forth Delhi Zoo) in India's capital city New Delhi (Urfi 1997). In this article, I focus on the opportunities for meaningful ecological research offered by the wild waterbirds nesting in the Delhi Zoo premises and discuss the significance for initiating novel, long term conservation monitoring programs, involving volunteers and bird watchers, to create data bases that will be useful for understanding urbanization and climate change impacts on biodiversity.

The effect of time period on point count methodology for monitoring breeding birds

Treesearch

Sallie J. Hejl; Thomas G. Thompson

2000-01-01

The traditional time period to survey breeding birds in low elevation forests of western Montana is from the middle of May through early July. There are some bird species, however, that begin their breeding cycle before these surveys begin and, therefore, may not be as vocal or active during the traditional survey period. To study the impact of survey timing on our...

The effects of bird use on nutrient removal in a constructed wastewater-treatment wetland

USGS Publications Warehouse

Andersen, D.C.; Sartoris, J.J.; Thullen, J.S.; Reusch, P.G.

2003-01-01

A 9.9-ha constructed wetland designed to reduce nitrogen in municipal wastewater following conventional secondary treatment began operating in southern California's San Jacinto Valley in September 1994. The wetland incorporated zones of bulrush (Schoenoplectus acutus and S. californicus) for effluent treatment, plus areas of 1.8-m deep open water and other features to benefit wintering waterfowl. A one-year long program to monitor bird use and evaluate their contribution to loadings of nitrogen and phosphorus was initiated seven months later and a second, four-month long period of monitoring was initiated after a 20-month hiatus. Daily bird use peaked at nearly 12,000 individuals during the second period. Estimates of maximum daily nitrogen and phosphorus input by birds were 139 g N ha−1 day−1 and 56 g P ha−1 day−1. Following a reconfiguration of the wetland that increased the area of open water, a third year-long period of monitoring was initiated in September 2000. Estimated maximum daily loading attributable to birds during this period reached 312 g N ha−1 day−1 and 124 g P ha−1 day−1. These levels represent only 2.6% and 7.0%, respectively, of the mean daily loads of N and P in inflow water from the wastewater-treatment plant. Wintering waterfowl contributed the most to nutrient loading, but the numerically dominant species was the colonial Red-winged Blackbird (Agelaius phoeniceus). The wetland's nutrient-removal efficiency was negatively correlated to bird loading. However, the greatest bird loading occurred during November to March, when winter conditions would reduce microbial nutrient-removal processes and plant uptake in the wetland. Multiple regression analysis indicated that variation in nutrient removal efficiency over a one-year period was best explained by wetland water temperature (R2 = 0.21) and that little additional insight was gained by adding bird loading and inflow nutrient load data (R2 = 0.22). This case study supports the concept that a constructed wetland can be designed both to reduce nutrients in municipal wastewater and to provide habitat for wetland birds.

Exploring the possibility of following the movements of a bird from an artificial earth satellite

NASA Technical Reports Server (NTRS)

Mackay, R. S.

1974-01-01

The development of a harness to hold the transmitter is discussed along with satellite systems for monitoring the flight paths of the birds, and incorporating biological information into the tracking signal.

Birds' nesting parameters in four forest types in the Pantanal wetland.

PubMed

Pinho, J B; Marini, M A

2014-11-01

We tested the heterogeneity/productivity hypothesis with respect to the abundance and richness of birds and the vegetation density hypothesis with respect to birds' nest predation rates, and determined the relative importance of forested vegetation formations for the conservation of birds in the Pantanal. We estimated the apparent nesting success, and the abundance and richness of nesting birds' in four forest types, by monitoring nests during two reproductive seasons in four forested physiognomies (two high productivity/heterogeneity evergreen forests = Cambará and Landi; two low productivity/heterogeneity dry forests = Cordilheira and Carvoeiro) in the Pantanal wetland in Poconé, State of Mato Grosso, Brazil. We found 381 nests of 46 species (35 Passeriformes and 11 non-Passeriformes) in the four forest types. Of these, we monitored 220 active nests belonging to 44 species, 101 during the reproductive season of 2001 and 119 in 2002. We supported the productivity/heterogeneity hypothesis since the two evergreen forests had higher nest abundance and one of them (Cambará) had higher nesting species richness than the dry forests. The number of nests found in each habitat differed with most nests monitored in the Cambará forest (82%), followed by Landi (9%), Cordilheira (6%) and Carvoeiro (3%) forests. The total number of nests monitored was significantly higher in evergreen forests than in dry forests. Also, more species nested in evergreen (37 species) than in dry (16 species) forests. A Correspondence Analysis revealed that only Carvoeiros had a different nesting bird community. The overall apparent nesting success of 220 nests was 26.8%. We did not support the vegetation density hypothesis since nest predation rates were similar between evergreen (73.5%) and dry (70%) forests, and were higher in the Landi (85%) than in the other three forests (69.2 to 72.2%). Our data indicate that Cambará forests seem to be a key nesting habitat for many bird species of the Pantanal. If this local pattern also occurs in other regions of the Pantanal, the use and management of Cambará forests might prove to be important for the conservation of forest birds of this biome. However, conflicting results with other taxonomic groups show that conservation measures for these forests and land use policies should be based on a more complete biodiversity evaluation of the region.

Investigation of avian influenza infection in wild birds in Ismailia and Damietta cities, Egypt

PubMed Central

Fadel, Hanaa Mohamed; Afifi, Rabab

2017-01-01

Aim: This study was carried out to monitor avian influenza (AI) infection in wild birds in Egypt. Materials and Methods: A total of 135 wild birds were examined for the presence of H5, H7, and H9 hemagglutination inhibition antibodies. Organs and swab samples of 75 birds were screened by multiplex real-time reverse transcriptase-polymerase chain reaction (RRT-PCR) to detect AI subtypes H5, H7, and H9 matrix genes. Results: The highest seropositive result was recorded in cattle egrets (90.9%) followed by crows (88.6%), semi-captive pigeons (44.8%), and moorhens (39.1%). In cattle egrets, semi-captive pigeons and moorhens, H5 antibodies predominated. In crows, H9 antibodies predominated. Multiple infections with two or three virus subtypes were highest in crows (6/39, 15.4%) followed by cattle egrets (3/30, 10%) and moorhens’ (1/9, 11.1%) positive samples. Multiplex RRT-PCR results revealed two positive samples in cattle egrets and moorhens. Conclusion: The results indicated high seropositive rates against AI virus subtypes H5 and H9 in the examined wild birds. Multiple infections with more than one AI virus (AIV) subtypes were detected in some birds. This requires a collaboration of efforts to monitor AIV infection in wild birds and implement suitable early intervention measures. PMID:28717324

Seabird tissue archival and monitoring project: Egg collections and analytical results 1999-2002

USGS Publications Warehouse

Vander Pol, Stacy S.; Christopher, Steven J.; Roseneau, David G.; Becker, Paul R.; Day, Russel D.; Kucklick, John R.; Pugh, Rebecca S.; Simac, Kristin S.; Weston-York, Geoff

2003-01-01

In 1998, the U.S. Geological Survey Biological Resources Division (USGS-BRD), the U.S. Fish and Wildlife Service (USFWS) Alaska Maritime National Wildlife Refuge (AMNWR), and the National Institute of Standards and Technology (NIST) began the Seabird Tissue Archival and Monitoring Project (STAMP) to collect and cryogenically bank tissues from seabirds in Alaska for future retrospective analysis of anthropogenic contaminants. The approach of STAMP was similar to that of the Alaska Marine Mammal Tissue Archival Project (AMMTAP). AMMTAP was started in 1987 by NIST and the National Oceanic and Atmospheric Administration (NOAA) as part of the Outer Continental Shelf Environmental Assessment Program sponsored by the Minerals Management Service. Presently sponsored by the USGS-BRD, AMMTAP continues its work as part of a larger national program, the Marine Mammal Health and Stranding Response Program. AMMTAP developed carefully designed sampling and specimen banking protocols. Since 1987, AMMTAP has collected tissues from marine mammals taken in Alaska Native subsistence hunts and has cryogenically banked these tissues at the NIST National Biomonitoring Specimen Bank (NBSB). Through its own analytical work and working in partnership with other researchers both within and outside Alaska, AMMTAP has helped to develop a substantial database on contaminants in Alaska marine mammals. In contrast, data and information is limited on contaminants in Alaska seabirds, which are similar to marine mammals in that they feed near the top of the food chain and have the potential for accumulating anthropogenic contaminants. During its early planning stages, STAMP managers identified the seabird egg as the first tissue of choice for study by the project. There is a relatively long history of using bird eggs for environmental monitoring and for investigating the health status of bird populations. Since 1998, protocols for collecting and processing eggs, and cryogenically banking egg samples have been developed by STAMP (see York et al. 2001). Eggs are being collected on an annual basis for several species at nesting colonies throughout Alaska. Aliquots of these egg samples are being analyzed on a regular basis for persistent organic pollutants and mercury. Results of this work have been published in scientific journals (Christopher et al. 2002) and in conference proceedings (Kucklick et al. 2002; Vander Pol et al. 2002a, 2002b). The intent of this report is to provide an up-to-date description of STAMP. The report contains the most recent egg collection inventory, analytical data, preliminary interpretations based on these data, and a discussion of possible future directions of the project.

Thermal Imaging to Study Stress Non-invasively in Unrestrained Birds.

PubMed

Jerem, Paul; Herborn, Katherine; McCafferty, Dominic; McKeegan, Dorothy; Nager, Ruedi

2015-11-06

Stress, a central concept in biology, describes a suite of emergency responses to challenges. Among other responses, stress leads to a change in blood flow that results in a net influx of blood to key organs and an increase in core temperature. This stress-induced hyperthermia is used to assess stress. However, measuring core temperature is invasive. As blood flow is redirected to the core, the periphery of the body can cool. This paper describes a protocol where peripheral body temperature is measured non-invasively in wild blue tits (Cyanistes caeruleus) using infrared thermography. In the field we created a set-up bringing the birds to an ideal position in front of the camera by using a baited box. The camera takes a short thermal video recording of the undisturbed bird before applying a mild stressor (closing the box and therefore capturing the bird), and the bird's response to being trapped is recorded. The bare skin of the eye-region is the warmest area in the image. This allows an automated extraction of the maximum eye-region temperature from each image frame, followed by further steps of manual data filtering removing the most common sources of errors (motion blur, blinking). This protocol provides a time series of eye-region temperature with a fine temporal resolution that allows us to study the dynamics of the stress response non-invasively. Further work needs to demonstrate the usefulness of the method to assess stress, for instance to investigate whether eye-region temperature response is proportional to the strength of the stressor. If this can be confirmed, it will provide a valuable alternative method of stress assessment in animals and will be useful to a wide range of researchers from ecologists, conservation biologists, physiologists to animal welfare researchers.

Monitoring Hawaiian biodiversity: Pilot study to assess changes to forest birds and their habitat

USGS Publications Warehouse

Gorresen, P. Marcos; Camp, Richard J.; Gaudioso, Jacqueline; Brinck, Kevin W.; Berkowitz, Paul; Jacobi, James D.

2017-01-01

Biological diversity, or biodiversity, is the variety and abundance of species in a defined area, and is one of the oldest and most basic descriptions of biological communities. Understanding how populations and communities are structured and change over space and time in response to internal and external forces is a management priority. Effective management practices and conservation strategies depend on our understanding of the relationship between changes in biodiversity and ecological drivers such as invasive species, land use and climate change. To demonstrate how changes in biodiversity may be monitored over a large (400 km2) tract of native forest habitat, we compared bird and plant community composition and structure in an upper montane region of Hawai‘i Island originally surveyed in 1977 as part of the Hawai‘i Forest Bird Survey (Scott et al. 1986) with a comprehensive sample of the same region in 2015.Our findings suggest that across a region spanning an elevation range of 600 to 2,000 m considerable changes occurred in the plant and bird communities between 1977 and 2015. Endemic and indigenous plants species richness (i.e., total number of species) decreased dramatically in the low and middle elevations below an invasive weed front, whereas naturalized plant species richness did not change between the two periods at any elevation. Endemic bird abundance decreased and two species were lost in the lower elevations (< 1,100 m) between 1977 and 2015, while naturalized bird abundance and the numbers of species increased in the same area. In addition to changes in community composition, the structure of the forest showed evidence of changes in dominant and sub-dominant tree canopy cover, shrub and herbaceous cover, dominant tree canopy height, and matted fern cover. Biodiversity monitoring helps to define specific conservation targets and to measure progress towards reaching those targets. It is difficult to ascribe causative factors to a change in biodiversity without directly manipulating the environment. Forest habitat in a variety of settings (i.e., islands and regions with differing land-use histories and elevation ranges), however, can provide opportunities to evaluate the influence of ecological drivers. Declines in native bird biodiversity in low-elevation areas may be attributed to invasive species as land use and climate conditions have remained relatively similar over the 40-year period. Thus, the shift from an endemic-naturalized co-dominated community in 1977 to one dominated by naturalized, alien birds in 2015, and reduction in native bird abundance over that period, may reflect increasing dominance by naturalized plants within this forested area. Inferences drawn from analyses of region-wide surveys, especially with replicate datasets, will facilitate the identification of broad-scale changes in biodiversity, and provide a needed current datum in Hawaiian plant and bird biodiversity monitoring.

Avian models for toxicity testing

USGS Publications Warehouse

Hill, E.F.; Hoffman, D.J.

1984-01-01

The use of birds as test models in experimental and environmental toxicology as related to health effects is reviewed, and an overview of descriptive tests routinely used in wildlife toxicology is provided. Toxicologic research on birds may be applicable to human health both directly by their use as models for mechanistic and descriptive studies and indirectly as monitors of environmental quality. Topics include the use of birds as models for study of teratogenesis and embryotoxicity, neurotoxicity, behavior, trends of environmental pollution, and for use in predictive wildlife toxicology. Uses of domestic and wild-captured birds are discussed.

Responses of cavity-nesting birds to stand-replacement fire and salvage logging in ponderosa pine/Douglas-fir forests of southwestern Idaho

Treesearch

Victoria A. Saab; Jonathan G. Dudley

1998-01-01

From 1994 to 1996, researchers monitored 695 nests of nine cavity-nesting bird species and measured vegetation at nest sites and at 90 randomly located sites in burned ponderosa pine forests of southwestern Idaho. Site treatments included two types of salvage logging, and unlogged controls. All bird species selected nest sites with higher tree densities, larger...

Fledging success is a poor indicator of the effects of bird blow flies on ovenbird survival

USGS Publications Warehouse

Peterson, Sean M.; Streby, Henry M.; Kapfer, Paul M.

2009-01-01

Infestations of bird blow flies (Protocalliphora spp. and Trypocalliphora braueri) have various negative effects on the condition of nestling birds. In the absence of other stressors such as inclement weather, however, infestation alone rarely reduces fledging success. Previous studies have documented effects of blow flies on nestling condition and fledging success. Without information regarding fledgling survival, the full effect of blow-fly infestation remains unclear. To fully investigate the effect of blow-fly infestation on reproductive success of the Ovenbird (Seiurus aurocapilla), we monitored infested and non-infested nests and monitored fledglings from each by using radio telemetry. Blow flies did not affect birds during the nestling period, as brood size, mean nestling mass, fledging success, and time to fledging in infested and non-infested nests were no different. Fledgling survival and minimum distance traveled the first day after fledging, however, were significantly lower for infected fledglings than for those that were not infected. We conclude that the stress of the early fledgling period combined with recent or concurrent blow-fly infection increases mortality in young Oven-birds. Our results demonstrate the importance of including the post-fledging period in investigations of the effects of ectoparasitic infestations on birds.

Avian mercury exposure and toxicological risk across western North America: A synthesis

USGS Publications Warehouse

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Herzog, Mark; Hartman, Christopher; Peterson, Sarah; Evers, David C.; Jackson, Allyson K.; Elliott, John E.; Vander Pol, Stacy S.; Bryan, Colleen E.

2016-01-01

Methylmercury contamination of the environment is an important issue globally, and birds are useful bioindicators for mercury monitoring programs. The available data on mercury contamination of birds in western North America were synthesized. Original data from multiple databases were obtained and a literature review was conducted to obtain additional mercury concentrations. In total, 29219 original bird mercury concentrations from 225 species were compiled, and an additional 1712 mean mercury concentrations, representing 19998 individuals and 176 species, from 200 publications were obtained. To make mercury data comparable across bird tissues, published equations of tissue mercury correlations were used to convert all mercury concentrations into blood-equivalent mercury concentrations. Blood-equivalent mercury concentrations differed among species, foraging guilds, habitat types, locations, and ecoregions. Piscivores and carnivores exhibited the greatest mercury concentrations, whereas herbivores and granivores exhibited the lowest mercury concentrations. Bird mercury concentrations were greatest in ocean and salt marsh habitats and lowest in terrestrial habitats. Bird mercury concentrations were above toxicity benchmarks in many areas throughout western North America, and multiple hotspots were identified. Additionally, published toxicity benchmarks established in multiple tissues were summarized and translated into a common blood-equivalent mercury concentration. Overall, 66% of birds sampled in western North American exceeded a blood-equivalent mercury concentration of 0.2 μg/g wet weight (ww; above background levels), which is the lowest-observed effect level, 28% exceeded 1.0 μg/g ww (moderate risk), 8% exceeded 3.0 μg/g ww (high risk), and 4% exceeded 4.0 μg/g ww (severe risk). Mercury monitoring programs should sample bird tissues, such as adult blood and eggs, that are most-easily translated into tissues with well-developed toxicity benchmarks and that are directly relevant to bird reproduction. Results indicate that mercury contamination of birds is prevalent in many areas throughout western North America, and large-scale ecological attributes are important factors influencing bird mercury concentrations.

Avian mercury exposure and toxicological risk across western North America: A synthesis

PubMed Central

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Herzog, Mark P.; Hartman, C. Alex; Peterson, Sarah H.; Evers, David C.; Jackson, Allyson K.; Elliott, John E.; Vander Pol, Stacy S.; Bryan, Colleen E.

2017-01-01

Methylmercury contamination of the environment is an important issue globally and birds are useful bioindicators for mercury monitoring programs. The available data on mercury contamination of birds in western North America were synthesized. Original data from multiple databases were obtained and a literature review was conducted to obtain additional mercury concentrations. In total, 29219 original bird mercury concentrations from 225 species were compiled, and an additional 1712 mean mercury concentrations, representing 19998 individuals and 176 species, from 200 publications were obtained. To make mercury data comparable across bird tissues, published equations of tissue mercury correlations were used to convert all mercury concentrations into blood-equivalent mercury concentrations. Blood-equivalent mercury concentrations differed among species, foraging guilds, habitat types, locations, and ecoregions. Piscivores and carnivores exhibited the greatest mercury concentrations, whereas herbivores and granivores exhibited the lowest mercury concentrations. Bird mercury concentrations were greatest in ocean and salt marsh habitats and lowest in terrestrial habitats. Bird mercury concentrations were above toxicity benchmarks in many areas throughout western North America, and multiple hotspots were identified. Additionally, published toxicity benchmarks established in multiple tissues were summarized and translated into a common blood-equivalent mercury concentration. Overall, 66% of birds sampled in western North American exceeded a blood-equivalent mercury concentration of 0.2 μg/g wet weight (ww; above background levels), which is the lowest-observed effect level, 28% exceeded 1.0 μg/g ww (moderate risk), 8% exceeded 3.0 μg/g ww (high risk), and 4% exceeded 4.0 μg/g ww (severe risk). Mercury monitoring programs should sample bird tissues, such as adult blood and eggs, that are most-easily translated into tissues with well-developed toxicity benchmarks and that are directly relevant to bird reproduction. Results indicate that mercury contamination of birds is prevalent in many areas throughout western North America, and large-scale ecological attributes are important factors influencing bird mercury concentrations. PMID:27093907

A Niche-Based Framework to Assess Current Monitoring of European Forest Birds and Guide Indicator Species' Selection

PubMed Central

Wade, Amy S. I.; Barov, Boris; Burfield, Ian J.; Gregory, Richard D.; Norris, Ken; Vorisek, Petr; Wu, Taoyang; Butler, Simon J.

2014-01-01

Concern that European forest biodiversity is depleted and declining has provoked widespread efforts to improve management practices. To gauge the success of these actions, appropriate monitoring of forest ecosystems is paramount. Multi-species indicators are frequently used to assess the state of biodiversity and its response to implemented management, but generally applicable and objective methodologies for species' selection are lacking. Here we use a niche-based approach, underpinned by coarse quantification of species' resource use, to objectively select species for inclusion in a pan-European forest bird indicator. We identify both the minimum number of species required to deliver full resource coverage and the most sensitive species' combination, and explore the trade-off between two key characteristics, sensitivity and redundancy, associated with indicators comprising different numbers of species. We compare our indicator to an existing forest bird indicator selected on the basis of expert opinion and show it is more representative of the wider community. We also present alternative indicators for regional and forest type specific monitoring and show that species' choice can have a significant impact on the indicator and consequent projections about the state of the biodiversity it represents. Furthermore, by comparing indicator sets drawn from currently monitored species and the full forest bird community, we identify gaps in the coverage of the current monitoring scheme. We believe that adopting this niche-based framework for species' selection supports the objective development of multi-species indicators and that it has good potential to be extended to a range of habitats and taxa. PMID:24819734

Evidence of absence (v2.0) software user guide

USGS Publications Warehouse

Dalthorp, Daniel; Huso, Manuela; Dail, David

2017-07-06

Evidence of Absence software (EoA) is a user-friendly software application for estimating bird and bat fatalities at wind farms and for designing search protocols. The software is particularly useful in addressing whether the number of fatalities is below a given threshold and what search parameters are needed to give assurance that thresholds were not exceeded. The software also includes tools (1) for estimating carcass persistence distributions and searcher efficiency parameters ( and ) from field trials, (2) for projecting future mortality based on past monitoring data, and (3) for exploring the potential consequences of various choices in the design of long-term incidental take permits for protected species. The software was designed specifically for cases where tolerance for mortality is low and carcass counts are small or even 0, but the tools also may be used for mortality estimates when carcass counts are large.

Genetic Structure and Antimicrobial Resistance of Escherichia coli and Cryptic Clades in Birds with Diverse Human Associations.

PubMed

Blyton, Michaela D J; Pi, Hongfei; Vangchhia, Belinda; Abraham, Sam; Trott, Darren J; Johnson, James R; Gordon, David M

2015-08-01

The manner and extent to which birds associate with humans may influence the genetic attributes and antimicrobial resistance of their commensal Escherichia communities through strain transmission and altered selection pressures. In this study, we determined whether the distribution of the different Escherichia coli phylogenetic groups and cryptic clades, the occurrence of 49 virulence associated genes, and/or the prevalence of resistance to 12 antimicrobials differed between four groups of birds from Australia with contrasting types of human association. We found that birds sampled in suburban and wilderness areas had similar Escherichia communities. The Escherichia communities of backyard domestic poultry were phylogenetically distinct from the Escherichia communities sourced from all other birds, with a large proportion (46%) of poultry strains belonging to phylogenetic group A and a significant minority (17%) belonging to the cryptic clades. Wild birds sampled from veterinary and wildlife rehabilitation centers (in-care birds) carried Escherichia isolates that possessed particular virulence-associated genes more often than Escherichia isolates from birds sampled in suburban and wilderness areas. The Escherichia isolates from both the backyard poultry and in-care birds were more likely to be multidrug resistant than the Escherichia isolates from wild birds. We also detected a multidrug-resistant E. coli strain circulating in a wildlife rehabilitation center, reinforcing the importance of adequate hygiene practices when handling and caring for wildlife. We suggest that the relatively high frequency of antimicrobial resistance in the in-care birds and backyard poultry is due primarily to the use of antimicrobials in these animals, and we recommend that the treatment protocols used for these birds be reviewed. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Genetic Structure and Antimicrobial Resistance of Escherichia coli and Cryptic Clades in Birds with Diverse Human Associations

PubMed Central

Blyton, Michaela D. J.; Pi, Hongfei; Vangchhia, Belinda; Abraham, Sam; Trott, Darren J.; Johnson, James R.

2015-01-01

The manner and extent to which birds associate with humans may influence the genetic attributes and antimicrobial resistance of their commensal Escherichia communities through strain transmission and altered selection pressures. In this study, we determined whether the distribution of the different Escherichia coli phylogenetic groups and cryptic clades, the occurrence of 49 virulence associated genes, and/or the prevalence of resistance to 12 antimicrobials differed between four groups of birds from Australia with contrasting types of human association. We found that birds sampled in suburban and wilderness areas had similar Escherichia communities. The Escherichia communities of backyard domestic poultry were phylogenetically distinct from the Escherichia communities sourced from all other birds, with a large proportion (46%) of poultry strains belonging to phylogenetic group A and a significant minority (17%) belonging to the cryptic clades. Wild birds sampled from veterinary and wildlife rehabilitation centers (in-care birds) carried Escherichia isolates that possessed particular virulence-associated genes more often than Escherichia isolates from birds sampled in suburban and wilderness areas. The Escherichia isolates from both the backyard poultry and in-care birds were more likely to be multidrug resistant than the Escherichia isolates from wild birds. We also detected a multidrug-resistant E. coli strain circulating in a wildlife rehabilitation center, reinforcing the importance of adequate hygiene practices when handling and caring for wildlife. We suggest that the relatively high frequency of antimicrobial resistance in the in-care birds and backyard poultry is due primarily to the use of antimicrobials in these animals, and we recommend that the treatment protocols used for these birds be reviewed. PMID:26002899

Complications at the Proximal Landing Zone of Endovascular Stent Grafts Deployed in Surgically Replaced Ascending Aorta.

PubMed

Kotha, Vamshi K; Herget, Eric J; Appoo, Jehangir J

2016-11-01

The ascending aorta, with its hostile angulations and forces, is the next frontier in the evolution of endovascular surgery. Type II hybrid arch repair, involving surgical replacement of the ascending aorta, arch debranching, and stent graft deployment in the ascending aortic graft, offers an opportunity to study the behavior of an endovascular prosthesis in the ascending aorta. We report complications seen at the proximal landing zone after type II hybrid arch repair. A dedicated imaging protocol was used to monitor 20 consecutive patients who underwent type II hybrid arch repair at a single center from June 2009 to July 2014. Mean age was 66 years (range, 47 to 82 years). Mean imaging follow-up was 34 months (range, 12 to 64 months). There was 1 operative death (5%). Bird beaking (>5 mm of nonapposition) of the stent graft at the proximal landing zone occurred in 12 patients, and >20 mm of bird beaking occurred in 7 patients. Proximal landing zone complications occurred in 4 patients (20%), comprising 2 type Ia endoleaks, 1 graft migration, and 1 graft infolding detected on postoperative days 4, 11, 5, and 755, respectively. Three patients underwent endovascular reintervention for proximal landing zone complications. There were no late deaths. Thoracic aortic stent grafts may be prone to proximal landing zone complications when deployed in the ascending aorta. Bird beaking is common when endografts are deployed in the Dacron (DuPont, Wilmington, DE) ascending aorta. Angulation issues will likely need to be overcome by stent graft refinement to enable future closed chest approaches to the ascending aorta. Copyright © 2016 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

El Grupo Cerúleo: collaboration to assess nonbreeding range of cerulean warbler in South America

USGS Publications Warehouse

Colorado, G.; Hamel, P.; Rodewald, A.; Thogmartin, W.

2008-01-01

Cerulean Warbler (Dendroica cerulea. Parulidae) has been listed as a vulnerable species by the International Union for the Conservation of Nature because of recent population declines. An international, proactive approach to Cerulean Warbler conservation, the Cerulean Warbler Technical Group, was founded in 2001. One of its subcommittees, El Grupo Cerúleo, addresses nonbreeding season issues to promote the protection of this bird through habitat conservation, field research on Cerulean Warbler winter ecology, public awareness, and the development of a predictive model to allow for assessment and monitoring of Cerulean Warbler. Most of the recent efforts of this group have been devoted to studying and understanding the spatial distribution of the Cerulean Warbler in South America through predictive models as a highly necessary strategy to elucidating the bird's occurrence, and thereby to identify and locate important nonbreeding habitats and areas of concentration in the Neotropics. To address this issue, members of EI Grupo Cerúleo developed five hypothetical models of potential distribution of the bird in the northern Andes based on existing historical records and surveys conducted by EI Grupo members. In order to validate the model output, we selected locations to verify the occurrence of the species, based on a stratified-random design, using locations where the Cerulean Warbler was predicted to occur by all five models. We elaborated field protocols to survey these locations. Resulting data will be structured for analysis using the techniques of occupancy modeling. Basic survey designs to carry out the fieldwork as well as preliminary results of the first year's fieldwork are presented. - See more at: http://www.srs.fs.usda.gov/pubs/31535#sthash.Lt3G7a8H.dpuf

Climate Watch and Spoonbill Watch: Engaging Communities in Climate Science and Bird Conservation

NASA Astrophysics Data System (ADS)

Michel, N. L.; Baker, R.; Bergstrom, E.; Cox, D.; Cox, G.; Dale, K.; Jensen, C.; Langham, G.; LeBaron, G.; Loftus, W.; Rowden, J.; Slavin, Z.; Smithson-Stanley, L.; Wilsey, C.

2016-12-01

Climate change poses serious challenges for conservation scientists and policymakers. Yet with these challenges come equally great opportunities to engage communities of concerned citizens in climate science and conservation. National Audubon Society's 2014 Birds and Climate Change report found that 314 North American bird species could lose over half their breeding or wintering ranges by 2080 due to climate change. Consequently, in 2016 Audubon developed two new crowd-sourced science programs that mobilized existing birding communities (i.e., Audubon Society chapters) in partnership with scientists to evaluate climate change effects on birds, and take action to protect vulnerable populations. Climate Watch expands upon traditional monitoring programs by involving citizen scientists in hypothesis-driven science, testing predictions of climate-driven range expansion in bluebirds developed by National Audubon Society scientists. Spoonbill Watch is a partnership between an Audubon research scientist and the Pelican Island Audubon Society community, in which citizen scientists monitor a Roseate Spoonbill colony recently established in response to changing habitat and climatic conditions. Additionally, Spoonbill Watch participants and leaders have moved beyond monitoring to take action to protect the colony, by working with the Florida Fish and Wildlife Conservation Commission towards getting the site declared as a Critical Wildlife Area and by conducting local outreach and education efforts. We will present overviews, lessons learned, and conservation goals and opportunities achieved during the pilot year of Climate Watch and Spoonbill Watch. Scientific - community partnerships such as these are essential to confront the threats posed by climate change.

Public health concerns associated with care of free-living birds.

PubMed

Whittington, Julia K

2011-09-01

Free-living birds are not only susceptible to certain infectious diseases; wild bird populations serve as reservoirs of several important diseases of public health concern. Bacterial and viral diseases endemic in populations of free-living birds such as tuberculosis, avian influenza, arboviral infections, and enteropathogens have been classified as emerging or reemerging. Providing care to wild avian patients increases the opportunity for direct contact with infected birds and the possibility of transmission of infectious disease to human handlers. Awareness of disease potential is critical to disease monitoring of wild populations and will allow for the implementation of precautionary measures when working with wild avian species. Biosecurity measures designed to minimize risk must be evaluated by individual facilities.

Survival of captive-reared Hispaniolan Parrots released in Parque Nacional del Este, Dominican Republic

USGS Publications Warehouse

Collazo, J.A.; White, T.H.; Vilella, F.J.; Guerrero, S.A.

2003-01-01

We report first-year survival rates of 49 captive-reared Hispaniolan Parrots (Amazona ventralis) released in Parque Nacional del Este, Dominican Republic. Our goal was to learn about factors affecting postrelease survival. Specifically, we tested if survival was related to movements and whether modifying prerelease protocols influenced survival rates. We also estimated survival in the aftermath of Hurricane Georges (22 September 1998). Twenty-four parrots, fitted with radio-transmitters, were released between 14 September and 12 December 1997. Twenty-five more were released between 29 June and 16 September 1998. First-year survival rates were 30% in 1997 and 29% in 1998. Survival probability was related to bird mobility. In contrast to birds released in 1997, none of the 25 parrots released in 1998 suffered early postrelease mortality (i.e., 3-5 days after release). Two adjustments to prerelease protocols (increased exercise and reduced blood sampling) made in 1998 may have contributed to differences in mobility and survival between years. The reduction of early postrelease mortality in 1998 was encouraging, as was the prospect for higher first-year survival (e.g., 30% to 65%). Only one death was attributed to the immediate impact of the hurricane. Loss of foraging resources was likely a major contributor to ensuing mortality. Birds increased their mobility, presumably in search of food. Survival rates dropped 23% in only eight weeks posthurricane. This study underscores the value of standardized prerelease protocols, and of estimating survival and testing for factors that might influence it. Inferences from such tests will provide the best basis to make adjustments to a release program.

SITE CHARACTERIZATION USING BIRD SPECIES COMPOSITION IN EASTERN OREGON, USA

EPA Science Inventory

We conducted riparian bird surveys at 25 randomly selected stream reaches in the John Day River Basin of eastern Oregon as part of the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP). At each reach along a kilometer-length transect, ...

BIRD GUILDS AS INDICATORS OF ECOLOGICAL CONDITION IN THE CENTRAL APPALACHIANS

EPA Science Inventory

As part of the U.S. Environmental Protection Agencys (EPAs) Environmental Monitoring and Assessment Program (EMAP), we developed an indicator of biotic integrity based on songbird community composition. Because songbirds occur in a wide variety of habitat types, the bird communit...

Rapid diagnosis of avian influenza virus in wild birds: Use of a portable rRT-PCR and freeze-dried reagents in the field

USGS Publications Warehouse

Takekawa, John Y.; Hill, N.J.; Schultz, A.K.; Iverson, S.A.; Cardona, C.J.; Boyce, W.M.; Dudley, J.P.

2011-01-01

Wild birds have been implicated in the spread of highly pathogenic avian influenza (HPAI) of the H5N1 subtype, prompting surveillance along migratory flyways. Sampling of wild birds for avian influenza virus (AIV) is often conducted in remote regions, but results are often delayed because of the need to transport samples to a laboratory equipped for molecular testing. Real-time reverse transcriptase polymerase chain reaction (rRT-PCR) is a molecular technique that offers one of the most accurate and sensitive methods for diagnosis of AIV. The previously strict lab protocols needed for rRT-PCR are now being adapted for the field. Development of freeze-dried (lyophilized) reagents that do not require cold chain, with sensitivity at the level of wet reagents has brought on-site remote testing to a practical goal. Here we present a method for the rapid diagnosis of AIV in wild birds using an rRT-PCR unit (Ruggedized Advanced Pathogen Identification Device or RAPID, Idaho Technologies, Salt Lake City, UT) that employs lyophilized reagents (Influenza A Target 1 Taqman; ASAY-ASY-0109, Idaho Technologies). The reagents contain all of the necessary components for testing at appropriate concentrations in a single tube: primers, probes, enzymes, buffers and internal positive controls, eliminating errors associated with improper storage or handling of wet reagents. The portable unit performs a screen for Influenza A by targeting the matrix gene and yields results in 2-3 hours. Genetic subtyping is also possible with H5 and H7 primer sets that target the hemagglutinin gene. The system is suitable for use on cloacal and oropharyngeal samples collected from wild birds, as demonstrated here on the migratory shorebird species, the western sandpiper (Calidrus mauri) captured in Northern California. Animal handling followed protocols approved by the Animal Care and Use Committee of the U.S. Geological Survey Western Ecological Research Center and permits of the U.S. Geological Survey Bird Banding Laboratory. The primary advantage of this technique is to expedite diagnosis of wild birds, increasing the chances of containing an outbreak in a remote location. On-site diagnosis would also prove useful for identifying and studying infected individuals in wild populations. The opportunity to collect information on host biology (immunological and physiological response to infection) and spatial ecology (migratory performance of infected birds) will provide insights into the extent to which wild birds can act as vectors for AIV over long distances.

Rapid Diagnosis of Avian Influenza Virus in Wild Birds: Use of a Portable rRT-PCR and Freeze-dried Reagents in the Field

PubMed Central

Takekawa, John Y.; Hill, Nichola J.; Schultz, Annie K.; Iverson, Samuel A.; Cardona, Carol J.; Boyce, Walter M.; Dudley, Joseph P.

2011-01-01

Wild birds have been implicated in the spread of highly pathogenic avian influenza (HPAI) of the H5N1 subtype, prompting surveillance along migratory flyways. Sampling of wild birds for avian influenza virus (AIV) is often conducted in remote regions, but results are often delayed because of the need to transport samples to a laboratory equipped for molecular testing. Real-time reverse transcriptase polymerase chain reaction (rRT-PCR) is a molecular technique that offers one of the most accurate and sensitive methods for diagnosis of AIV. The previously strict lab protocols needed for rRT-PCR are now being adapted for the field. Development of freeze-dried (lyophilized) reagents that do not require cold chain, with sensitivity at the level of wet reagents has brought on-site remote testing to a practical goal. Here we present a method for the rapid diagnosis of AIV in wild birds using an rRT-PCR unit (Ruggedized Advanced Pathogen Identification Device or RAPID, Idaho Technologies, Salt Lake City, UT) that employs lyophilized reagents (Influenza A Target 1 Taqman; ASAY-ASY-0109, Idaho Technologies). The reagents contain all of the necessary components for testing at appropriate concentrations in a single tube: primers, probes, enzymes, buffers and internal positive controls, eliminating errors associated with improper storage or handling of wet reagents. The portable unit performs a screen for Influenza A by targeting the matrix gene and yields results in 2-3 hours. Genetic subtyping is also possible with H5 and H7 primer sets that target the hemagglutinin gene. The system is suitable for use on cloacal and oropharyngeal samples collected from wild birds, as demonstrated here on the migratory shorebird species, the western sandpiper (Calidrus mauri) captured in Northern California. Animal handling followed protocols approved by the Animal Care and Use Committee of the U.S. Geological Survey Western Ecological Research Center and permits of the U.S. Geological Survey Bird Banding Laboratory. The primary advantage of this technique is to expedite diagnosis of wild birds, increasing the chances of containing an outbreak in a remote location. On-site diagnosis would also prove useful for identifying and studying infected individuals in wild populations. The opportunity to collect information on host biology (immunological and physiological response to infection) and spatial ecology (migratory performance of infected birds) will provide insights into the extent to which wild birds can act as vectors for AIV over long distances. PMID:21847073

Cholinesterase (ChE) response and related mortality among birds fed ChE inhibitors

USGS Publications Warehouse

Ludke, J.L.; Hill, E.F.; Dieter, M.P.

1975-01-01

Patterns of mortality and inhibition of brain and plasma ChE in birds treated with ChE inhibitors were studied in an attempt to determine the validity of using ChE activity as a monitoring and diagnostic technique. Analysis of brain ChE activity proved to be reliable for diagnosing and monitoring effects of selected ChE inhibitors in birds. Brain ChE inhibition exceeding 20% indicated exposure, and inhibition greater than 50% was sufficient for diagnosing cause of death. Individuals that died from dietary exposure to parathion or carbofuran had brain ChE activities below 55% of normal; although individuals could survive with brain ChE activity lower than 50%. Problems associated with collection, storage, and analysis of tissues for ChE activity are discussed.

Forest management under uncertainty for multiple bird population objectives

USGS Publications Warehouse

Moore, C.T.; Plummer, W.T.; Conroy, M.J.; Ralph, C. John; Rich, Terrell D.

2005-01-01

We advocate adaptive programs of decision making and monitoring for the management of forest birds when responses by populations to management, and particularly management trade-offs among populations, are uncertain. Models are necessary components of adaptive management. Under this approach, uncertainty about the behavior of a managed system is explicitly captured in a set of alternative models. The models generate testable predictions about the response of populations to management, and monitoring data provide the basis for assessing these predictions and informing future management decisions. To illustrate these principles, we examine forest management at the Piedmont National Wildlife Refuge, where management attention is focused on the recovery of the Red-cockaded Woodpecker (Picoides borealis) population. However, managers are also sensitive to the habitat needs of many non-target organisms, including Wood Thrushes (Hylocichla mustelina) and other forest interior Neotropical migratory birds. By simulating several management policies on a set of-alternative forest and bird models, we found a decision policy that maximized a composite response by woodpeckers and Wood Thrushes despite our complete uncertainty regarding system behavior. Furthermore, we used monitoring data to update our measure of belief in each alternative model following one cycle of forest management. This reduction of uncertainty translates into a reallocation of model influence on the choice of optimal decision action at the next decision opportunity.

Estimating mercury exposure of piscivorous birds and sport fish using prey fish monitoring

USGS Publications Warehouse

Ackerman, Joshua T.; Hartman, C. Alex; Eagles-Smith, Collin A.; Herzog, Mark P.; Davis, Jay; Ichikawa, Gary; Bonnema, Autumn

2015-01-01

Methylmercury is a global pollutant of aquatic ecosystems, and monitoring programs need tools to predict mercury exposure of wildlife. We developed equations to estimate methylmercury exposure of piscivorous birds and sport fish using mercury concentrations in prey fish. We collected original data on western grebes (Aechmophorus occidentalis) and Clark’s grebes (Aechmophorus clarkii) and summarized the published literature to generate predictive equations specific to grebes and a general equation for piscivorous birds. We measured mercury concentrations in 354 grebes (blood averaged 1.06 ± 0.08 μg/g ww), 101 grebe eggs, 230 sport fish (predominantly largemouth bass and rainbow trout), and 505 prey fish (14 species) at 25 lakes throughout California. Mercury concentrations in grebe blood, grebe eggs, and sport fish were strongly related to mercury concentrations in prey fish among lakes. Each 1.0 μg/g dw (∼0.24 μg/g ww) increase in prey fish resulted in an increase in mercury concentrations of 103% in grebe blood, 92% in grebe eggs, and 116% in sport fish. We also found strong correlations between mercury concentrations in grebes and sport fish among lakes. Our results indicate that prey fish monitoring can be used to estimate mercury exposure of piscivorous birds and sport fish when wildlife cannot be directly sampled.

Nest densities of cavity-nesting birds in relation to postfire salvage logging and time since wildfire

Treesearch

Victoria A. Saab; Robin E. Russell; Jonathan G. Dudley

2007-01-01

We monitored the nest densities and nest survival of seven cavity-nesting bird species, including four open-space foragers (American Kestrel [Falco sparverius], Lewis's Woodpecker [Melanerpes lewis], Western Bluebird [Sialia mexicana], and Mountain Bluebird [S. currucoides]) and three wood...

Influence of hiking trails on montane birds

Treesearch

William V. Deluca; David I. King

2014-01-01

Montane forests contribute significantly to regional biodiversity. Long-term monitoring data, often located along hiking trails, suggests that several indicator species of this ecosystem have declined in recent decades. Declining montane bird populations have been attributed to anthropogenic stressors such as climate change and atmospheric deposition. Several studies...

Monitoring neotropical migrants on managed lands: when, where, why

Treesearch

Sam Droege

1993-01-01

Relevant wildlife monitoring on managed lands lies somewhere between monitoring everything and monitoring nothing. Knowing the population status of all birds on a managed area would be potentially useful information but would be costly to collect, but without monitoring no link between management and wildlife populations can be made. A decision making process for...

Loss of sagebrush ecosystems and declining bird populations in the Intermountain West: Priority research issues and information needs

USGS Publications Warehouse

,

2002-01-01

Sagebrush lands in the Intermountain West are declining rapidly in quality and extent. Consequently, populations of many bird species dependent on these ecosystems also are declining. The greater sage-grouse has been petitioned for listing as a threatened and endangered species, and other species of sagebrush-obligate birds have special conservation status in most states. We identified the primary issues and information needs during a multi-agency workshop, conducted in response to concerns by management agencies related to declining bird population trends in sagebrush habitats. Priority needs were to (1) obtain a better understanding of bird response to habitat and landscape features, (2) develop monitoring designs to sample habitats and bird populations, (3) determine the effects of land use on sagebrush habitats and dependent bird species, and (4) identify linkages between breeding and wintering ranges. This agenda will identify causes and mechanisms of population declines in birds dependent on sagebrush ecosystems and will lead to better management of the ecosystems upon which they depend.

Large extents of intensive land use limit community reorganization during climate warming.

PubMed

Oliver, Tom H; Gillings, Simon; Pearce-Higgins, James W; Brereton, Tom; Crick, Humphrey Q P; Duffield, Simon J; Morecroft, Michael D; Roy, David B

2017-06-01

Climate change is increasingly altering the composition of ecological communities, in combination with other environmental pressures such as high-intensity land use. Pressures are expected to interact in their effects, but the extent to which intensive human land use constrains community responses to climate change is currently unclear. A generic indicator of climate change impact, the community temperature index (CTI), has previously been used to suggest that both bird and butterflies are successfully 'tracking' climate change. Here, we assessed community changes at over 600 English bird or butterfly monitoring sites over three decades and tested how the surrounding land has influenced these changes. We partitioned community changes into warm- and cold-associated assemblages and found that English bird communities have not reorganized successfully in response to climate change. CTI increases for birds are primarily attributable to the loss of cold-associated species, whilst for butterflies, warm-associated species have tended to increase. Importantly, the area of intensively managed land use around monitoring sites appears to influence these community changes, with large extents of intensively managed land limiting 'adaptive' community reorganization in response to climate change. Specifically, high-intensity land use appears to exacerbate declines in cold-adapted bird and butterfly species, and prevent increases in warm-associated birds. This has broad implications for managing landscapes to promote climate change adaptation. © 2017 John Wiley & Sons Ltd.

Survival of captive-reared Puerto Rican Parrots released in the Caribbean National Forest

USGS Publications Warehouse

White, T.H.; Collazo, J.A.; Vilella, F.J.

2005-01-01

We report first-year survival for 34 captive-reared Puerto Rican Parrots (Amazona vittata) released in the Caribbean National Forest, Puerto Rico between 2000 and 2002. The purpose of the releases were to increase population size and the potential number of breeding individuals of the sole extant wild population, and to refine release protocols for eventual reintroduction of a second wild population elsewhere on the island. After extensive prerelease training, we released 10 parrots in 2000, 16 parrots in 2001, and eight parrots in 2002 ranging in age from 1-4 years old. All birds were equipped with radio-transmitters to monitor survival. The overall first-year survival estimate for the 34 parrots was 41% (CI = 22%-61%). Only one parrot died within the first week postrelease, with most (94%) surviving for at least eight weeks after release. Most (54%) documented mortalities were due to raptor predation, which claimed 21% of all released parrots. A captive-reared bird (male, age one), released in 2001, paired with a wild female and fledged two young in 2004. We also calculated survival based on 0% and 50% of observed predation losses and found hypothetical survival rates of 72% and 54%, respectively. Rigorous prerelease training and acclimation was believed to have improved initial postrelease parrot survival, and releasing mixed age-class groups suggests the potential for shortening the time to recruitment. ?? The Cooper Ornithological Society 2005.

Cross-training in birds: cold and exercise training produce similar changes in maximal metabolic output, muscle masses and myostatin expression in house sparrows (Passer domesticus)

PubMed Central

Zhang, Yufeng; Eyster, Kathleen; Liu, Jin-Song; Swanson, David L.

2015-01-01

ABSTRACT Maximal metabolic outputs for exercise and thermogenesis in birds presumably influence fitness through effects on flight and shivering performance. Because both summit (Msum, maximum thermoregulatory metabolic rate) and maximum (MMR, maximum exercise metabolic rate) metabolic rates are functions of skeletal muscle activity, correlations between these measurements and their mechanistic underpinnings might occur. To examine whether such correlations occur, we measured the effects of experimental cold and exercise training protocols for 3 weeks on body (Mb) and muscle (Mpec) masses, basal metabolic rate (BMR), Msum, MMR, pectoralis mRNA and protein expression for myostatin, and mRNA expression of TLL-1 and TLL-2 (metalloproteinase activators of myostatin) in house sparrows (Passer domesticus). Both training protocols increased Msum, MMR, Mb and Mpec, but BMR increased with cold training and decreased with exercise training. No significant differences occurred for pectoralis myostatin mRNA expression, but cold and exercise increased the expression of TLL-1 and TLL-2. Pectoralis myostatin protein levels were generally reduced for both training groups. These data clearly demonstrate cross-training effects of cold and exercise in birds, and are consistent with a role for myostatin in increasing pectoralis muscle mass and driving organismal increases in metabolic capacities. PMID:25987736

FIELD DEPLOYABLE TECHNIQUES TO MONITOR EXPOSURE TO ENVIRONMENTAL ESTROGENS THROUGHOUT THE REPRODUCTIVE CYCLE OF WILD BIRDS

EPA Science Inventory

Concern about potential for endocrine disrupting chemicals to interfere with normal breeding behaviors of wildlife prompted this study of effects of exposure to environmental estrogens during the breeding cycle of wild birds. The house finch (Carpodacus mexicanus) was selected as...

Resumes of the Bird mission

NASA Astrophysics Data System (ADS)

Lorenz, E.; Borwald, W.; Briess, K.; Kayal, H.; Schneller, M.; Wuensten, Herbert

2004-11-01

The DLR micro satellite BIRD (Bi-spectral Infra Red Detection) was piggy- back launched with the Indian Polar Satellite Launch Vehicle PSLV-C3 into a 570 km circular sun-synchronous orbit on 22 October 2001. The BIRD mission, fully funded by the DLR, answers topical technological and scientific questions related to the operation of a compact infra- red push-broom sensor system on board of a micro satellite and demonstrates new spacecraft bus technologies. BIRD mission control is conducted by DLR / GSOC in Oberpfaffenhofen. Commanding, data reception and data processing is performed via ground stations in Weilheim and Neustrelitz (Germany). The BIRD mission is a demonstrator for small satellite projects dedicated to the hazard detection and monitoring. In the year 2003 BIRD has been used in the ESA project FUEGOSAT to demonstrate the utilisation of innovative space technologies for fire risk management.

High resolution critical habitat mapping and classification of tidal freshwater wetlands in the ACE Basin

NASA Astrophysics Data System (ADS)

Strickland, Melissa Anne

In collaboration with the South Carolina Department of Natural Resources ACE Basin National Estuarine Research Reserve (ACE Basin NERR), the tidal freshwater ecosystems along the South Edisto River in the ACE Basin are being accurately mapped and classified using a LIDAR-Remote Sensing Fusion technique that integrates LAS LIDAR data into texture images and then merges the elevation textures and multispectral imagery for very high resolution mapping. This project discusses the development and refinement of an ArcGIS Toolbox capable of automating protocols and procedures for marsh delineation and microhabitat identification. The result is a high resolution habitat and land use map used for the identification of threatened habitat. Tidal freshwater wetlands are also a critical habitat for colonial wading birds and an accurate assessment of community diversity and acreage of this habitat type in the ACE Basin will support SCDNR's conservation and protection efforts. The maps developed by this study will be used to better monitor the freshwater/saltwater interface and establish a baseline for an ACE NERR monitoring program to track the rates and extent of alterations due to projected environmental stressors. Preliminary ground-truthing in the field will provide information about the accuracy of the mapping tool.

[The myocardial thickness in budgerigars (Melopsittacus undulatus) and Australian king parrots (Alisterus s. scapularis)].

PubMed

Straub, Jens; Valerius, Klaus-Peter; Pees, Michael; Krautwald-Junghanns, Maria-Elisabeth

2002-01-01

Due to lack of reference values an objective assessment of myocardial dilatation and hypertrophy in cage and aviary birds so far is not possible. Therefore the thickness of the myocardium of the left and the right ventricle of the heart of 14 budgerigars (Melopsittacus undulatus) and 5 Alisterus parrots (Alisterus s. scapularis) of both sexes was examined according to a standard protocol to establish morphometric data and first reference values. In order to compare the results of birds of different sizes all data were set in relation to the size of the bird's body (length of the sternum). Results of different zones were compared by means of statistical methods within one species. Besides that a comparison between the two species was performed. Only minor significant differences could be noticed.

2016 Results for Avian Monitoring at the TA-36 Minie Site, TA-39 Point 6, and TA-16 Burn Ground at Los Alamos National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hathcock, Charles Dean; Thompson, Brent E.; Berryhill, Jesse Tobias

Los Alamos National Security, LLC (LANS) biologists in the Environmental Compliance and Protection Division at Los Alamos National Laboratory (LANL) initiated a multi-year program in 2013 to monitor avifauna at two open detonation sites and one open burn site on LANL property. Monitoring results from these efforts are compared among years and with avifauna monitoring conducted at other areas across LANL. The objectives of this study are to determine whether LANL firing site operations impact bird abundance or diversity. LANS biologists completed the fourth year of this effort in 2016. The overall results from 2016 continue to indicate that operationsmore » are not negatively affecting bird populations. Data suggest that community structure may be changing at some sites and this trend will continue to be monitored.« less

Avian Assemblages at Bird Baths: A Comparison of Urban and Rural Bird Baths in Australia

PubMed Central

Cleary, Gráinne P.; Parsons, Holly; Davis, Adrian; Coleman, Bill R.; Jones, Darryl N.; Miller, Kelly K.; Weston, Michael A.

2016-01-01

Private gardens provide habitat and resources for many birds living in human-dominated landscapes. While wild bird feeding is recognised as one of the most popular forms of human-wildlife interaction, almost nothing is known about the use of bird baths. This citizen science initiative explores avian assemblages at bird baths in private gardens in south-eastern Australia and how this differs with respect to levels of urbanisation and bioregion. Overall, 992 citizen scientists collected data over two, four-week survey periods during winter 2014 and summer 2015 (43% participated in both years). Avian assemblages at urban and rural bird baths differed between bioregions with aggressive nectar-eating species influenced the avian assemblages visiting urban bird baths in South Eastern Queensland, NSW North Coast and Sydney Basin while introduced birds contributed to differences in South Western Slopes, Southern Volcanic Plains and Victorian Midlands. Small honeyeaters and other small native birds occurred less often at urban bird baths compared to rural bird baths. Our results suggest that differences between urban versus rural areas, as well as bioregion, significantly influence the composition of avian assemblages visiting bird baths in private gardens. We also demonstrate that citizen science monitoring of fixed survey sites such as bird baths is a useful tool in understanding large-scale patterns in avian assemblages which requires a vast amount of data to be collected across broad areas. PMID:26962857

Field Validation of a Conservation Network on the Eastern Shore of Maryland, USA, Using Breeding Birds as Bio-Indicators

NASA Astrophysics Data System (ADS)

Weber, Theodore C.; Blank, Peter J.; Sloan, Anne

2008-04-01

Maryland’s Green Infrastructure (GI) is a network of large, intact natural areas (hubs), interconnected by linear swaths of riparian or upland vegetation (corridors). The GI serves significant ecological functions and provides the bulk of the state’s natural support system. This study examined whether the GI as mapped does, in fact, identify Maryland’s most ecologically valuable forested lands, using forest interior dwelling birds (hereafter called “forest birds”) as bio-indicators. We conducted bird point counts within forest both inside and outside of hubs on Maryland’s Eastern Shore. We also collected a wide variety of habitat data. We found that both the condition of a forest and its surrounding landscape influenced the bird communities. On average, forest bird richness was significantly higher within hubs; furthermore, almost all sites with at least five forest bird species present were in hubs. Forest bird richness and abundance were highest in undisturbed, mature broadleaf forest with wetlands and streams nearby. We detected a significant relationship between forest bird richness and the ecological score of a finer-scale landscape assessment, focused on “cells” of about 0.1 ha in size. This field study also validated the Rapid Field Assessment (RFA) protocol developed in 2001 to assess, on the ground, the relative condition of individual sites or properties within the GI. Forest bird richness and abundance were positively correlated with the RFA community scores. Our results underscore the importance of maintaining regional biological diversity by retaining large blocks of forest, especially mature forest containing streams and wetlands.

Preliminary investigations of the winter ecology of Long-billed Curlews in coastal Texas

USGS Publications Warehouse

Woodin, Marc C.; Skoruppa, Mary Kay; Edwardson, Jeremy W.; Austin, Jane E.

2012-01-01

Results from this 1-year pilot study yielded an intriguing combination of findings that warrant further investigation. Observations include reduced numbers of roosting birds along the Texas coast during dry conditions, highly dynamic use of nocturnal roost sites, use of widely divergent habitat types for foraging, low body mass of most captured birds, and apparent fidelity to general feeding areas. Future investigations of this eastern winter population of curlews would benefit from larger sample sizes and monitoring of individual birds.

Avian influenza prevalence among hunter-harvested birds in a remote Canadian First Nation community.

PubMed

Liberda, Eric N; Meldrum, Richard; Charania, Nadia A; Davey, Robert; Tsuji, Leonard Js

2017-01-01

Avian influenza virus (AIV) prevalence has been associated with wild game and other bird species. The contamination of these birds may pose a greater risk to those who regularly hunt and consumed infected species. Due to resident concerns communicated by local Band Council, hunter-harvested birds from a remote First Nation community in subArctic Ontario, Canada were assessed for AIV. Hunters, and especially those who live a subsistence lifestyle, are at higher risk of AIV exposure due to their increased contact with wild birds, which represent an important part of their diet. Cloacal swabs from 304 harvested game birds representing several species of wild birds commonly hunted and consumed in this First Nation community were analyzed for AIV using real-time reverse transcription polymerase chain reaction. Subtyping was performed using reverse transcription polymerase chain reaction. Sequences were assembled using Lasergene, and the sequences were compared to Genbank. In total, 16 of the 304 cloacal swab samples were positive for AIV. Of the 16 positive samples, 12 were found in mallard ducks, 3 were found in snow geese (wavies), and 1 positive sample was found in partridge. The AIV samples were subtyped, when possible, and found to be positive for the low pathogenic avian influenza virus subtypes H3 and H4. No samples were positive for subtypes of human concern, namely H5 and H7. This work represents the first AIV monitoring program results of hunter-harvested birds in a remote subsistence First Nation community. Community-level surveillance of AIV in remote subsistence hunting communities may help to identify future risks, while educating those who may have the highest exposure about proper handling of hunted birds. Ultimately, only low pathogenic strains of AIV were found, but monitoring should be continued and expanded to safeguard those with the highest exposure risk to AIV.

Riparian Bird Population Monitoring in Utah, 1992-2001

Treesearch

Russell E. Norvell; Frank P. Howe; Jimmie R. Parrish

2005-01-01

We report statewide linear and non-linear trends in density from 1992 to 2001 for six common bird species in the riparian areas of Utah. The six species examined here represent over 24 percent of all observations in the period. Four of the six species showed linear declines (Black-headed Grosbeak [Pheucticus melanocephalus], American Goldfinch [

How do humans restructure the biodiversity of the Sonoran Desert?

Treesearch

Diane Hope; Corinna Gries; Paige Warren; Madhu Katti; Glenn Stuart; Jake Oleson; Jason Kaye

2005-01-01

We studied patterns of biodiversity across the entire urban, suburban, agricultural, and surrounding Sonoran Desert landscape of central Arizona-Phoenix. A probability-based extensive integrated field inventory was used to survey perennial plants, pollen, birds, and sample soil chemistry, supplemented by monthly or quarterly monitoring of arthropod and bird communities...

Census Methods for Caribbean Land Birds

Treesearch

Joseph M. Wunderle

1994-01-01

Different census methods can be used to survey the distribution of a terrestrial bird species or to monitor population changes. The appropriate method depends on whether the objective is simply to document the presence of a species or to quantify its relative abundance, population density, population trends over time, habitat use, survivorship, or the physical...

Status and management of neotropical migratory birds

Treesearch

Deborah M. Finch; Peter W. Stangel

1993-01-01

This proceedings is the product of a National Training Workshop held at the Estes Park Center, Estes Park, Colorado, 21-25 September, 1992. Invited papers discuss all aspects of management, monitoring, and conservation of neotropical migratory birds on the breeding grounds. The proceedings is divided into seven sections that range from philosophical discussions to...

Isolation of H15N7 influenza virus from wild birds in Eastern Europe and its relationship to viruses from other regions

USDA-ARS?s Scientific Manuscript database

Background: Continuous monitoring of influenza viruses circulating in the natural reservoir in wild birds is important for early warning and forecasting of epizootic and epidemiological situation with influenza. These studies allow getting much valuable information on the environmental features of ...

Forest Management Under Uncertainty for Multiple Bird Population Objectives

Treesearch

Clinton T. Moore; W. Todd Plummer; Michael J. Conroy

2005-01-01

We advocate adaptive programs of decision making and monitoring for the management of forest birds when responses by populations to management, and particularly management trade-offs among populations, are uncertain. Models are necessary components of adaptive management. Under this approach, uncertainty about the behavior of a managed system is explicitly captured in...

Techniques and results of nongame bird monitoring in North America

USGS Publications Warehouse

Robbins, C.S.; Bystrak, D.; Geissler, P.H.; Oelke, H.

1980-01-01

Long-term bird population trends based on accumulated ratios (proportional change) sometimes give a very misleading view of population change. Alternate methods of representing population change, based on the weighted means for the individual years, avoid the dangers of using ratios. Some advantages and disadvantages of various weighting techniques are discussed.

Coordinating across scales: Building a regional marsh bird monitoring program from national and state Initiatives

USGS Publications Warehouse

Shriver, G.W.; Sauer, J.R.

2008-01-01

Salt marsh breeding bird populations (rails, bitterns, sparrows, etc.) in eastern North America are high conservation priorities in need of site specific and regional monitoring designed to detect population changes over time. The present status and trends of these species are unknown but anecdotal evidence of declines in many of the species has raised conservation concerns. Most of these species are listed as conservation priorities on comprehensive wildlife plans throughout the eastern U.S. National Wildlife Refuges, National Park Service units, and other wildlife conservation areas provide important salt marsh habitat. To meet management needs for these areas, and to assist regional conservation planning, survey designs are being developed to estimate abundance and population trends for these breeding bird species. The primary purpose of this project is to develop a hierarchical sampling frame for salt marsh birds in Bird Conservation Region (BCR) 30 that will provide the ability to estimate species population abundances on 1) specific sites (i.e. National Parks and National Wildlife Refuges), 2) within states or regions, and 3) within BCR 30. The entire breeding range of Saltmarsh Sharp-tailed and Coastal Plain Swamp sparrows are within BCR 30, providing an opportunity to detect population trends within the entire breeding ranges of two priority species.

Detection of avian paramyxoviruses in migratory and resident birds in the state of Rio de Janeiro, Brazil.

PubMed

Fornells, Luz Alba M G; Travassos, Carlos E P F; Costa, Claudia M; Novelli, Ronaldo; Petrucci, Melissa P; Soffiati, Flavio L; Bianchi, Iliani; de Souza, Luiz F Lino; Veiga, Venício F; Liberal, Maíra H T; Couceiro, José Nelson S S

2013-12-01

Paramyxoviruses and avian influenza viruses are present worldwide, and wild birds are known natural reservoirs of these viruses. This study monitored the circulation of these viruses in migratory and resident coastal birds captured in the state of Rio de Janeiro, Brazil. In total, 494 birds were trapped, and their fecal samples were collected and inoculated into embryonated chicken eggs. The allantoic fluids were evaluated using a hemagglutination test and PCR amplification of the genes of the M and L proteins of influenza A virus and paramyxovirus, respectively. Avian paramyxovirus was detected in 5 (1.01%) of the birds. The majority of these viruses were isolated from migratory birds classified into the order Charadriiformes (families Scolopacidae and Charadriidae). Four samples were characterized as avian paramyxovirus serotype-2 (APMV-2) by a hemagglutination inhibition test. These results reinforce the importance of continuous surveillance of wild species in Brazil.

Isolation of an H5N8 Highly Pathogenic Avian Influenza Virus Strain from Wild Birds in Seoul, a Highly Urbanized Area in South Korea.

PubMed

Kwon, Jung-Hoon; Lee, Dong-Hun; Jeong, Jei-Hyun; Yuk, Seong-Su; Erdene-Ochir, Tseren-Ochir; Noh, Jin-Yong; Hong, Woo-Tack; Jeong, Sol; Gwon, Gyeong-Bin; Lee, Sang-Won; Choi, In-Soo; Song, Chang-Seon

2017-07-01

Asian-lineage H5 highly pathogenic avian influenza viruses (HPAIV) have caused recurrent outbreaks in poultry and wild birds. In January 2014, H5N8 HPAIV caused outbreaks in South Korea and subsequently spread to East Asia, Europe, and North America. We report the isolation of an H5N8 HPAIV strain from wild birds in Seoul, the most-developed city in South Korea. We analyzed the complete genome sequence of this isolate and estimated its origin using a phylogenetic analysis. The Seoul H5N8 isolate clustered phylogenetically with strains isolated from migratory wild birds but was distinct from Korean poultry isolates. This H5N8 virus was likely introduced into the urbanized city by migratory wild birds. Therefore, wild bird habitats in urbanized areas should be carefully monitored for HPAIV.

Evaluation of EEG based determination of unconsciousness vs. loss of posture in broilers.

PubMed

Benson, E R; Alphin, R L; Rankin, M K; Caputo, M P; Kinney, C A; Johnson, A L

2012-10-01

Evaluation of the loss of consciousness in poultry is an essential component in evaluating bird welfare under a variety of situations and applications. Many current approaches to evaluating loss of consciousness are qualitative and require observation of the bird. This study outlines a quantitative method for determining the point at which a bird loses consciousness. In this study, commercial broilers were individually anesthetized and the brain activity recorded as the bird became unconscious. A wireless EEG transmitter was surgically implanted and the bird anesthetized after a 24-48 h recovery. Each bird was monitored during treatment with isoflurane anesthesia and EEG data was evaluated using a frequency based approach. The alpha/delta (A/D) ratio and loss of posture (LOP) were used to determine the point at which the birds went unconscious. There was no statistically significant difference between time to unconsciousness as measured by A/D ratio or LOP. Copyright © 2011 Elsevier Ltd. All rights reserved.

Avian Monitoring and Risk Assessment at the San Gorgonio Wind Resource Area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, R.; Tom, J.; Neumann, N.

2005-08-01

The primary objective of this study at the San Gorgonio Wind Resource Area was to estimate and compare bird utilization, fatality rates, and the risk index among factors including bird taxonomic groups, wind turbine and reference areas, wind turbine sizes and types, and geographic locations. The key questions addressed to meet this objective include: (1) Are there any differences in the level of bird activity, called ''utilization rate'' or ''use'', with the operating wind plant and within the surrounding undeveloped areas (reference area)?; (2) Are there any differences in the rate of bird fatalities (or avian fatality) within the operatingmore » wind plant or the surrounding undeveloped areas (reference area)?; (3) Does bird use, fatality rates, or bird risk index vary according to the geographic location, type and size of wind turbine, and/or type of bird within the operating wind plant and surrounding undeveloped areas (reference area)?; and (4) How do raptor fatality rates at San Gorgonio compare to other wind projects with comparable data?« less

The bat-bird-bug battle: daily flight activity of insects and their predators over a rice field revealed by high-resolution Scheimpflug Lidar

NASA Astrophysics Data System (ADS)

Malmqvist, Elin; Jansson, Samuel; Zhu, Shiming; Li, Wansha; Svanberg, Katarina; Svanberg, Sune; Rydell, Jens; Song, Ziwei; Bood, Joakim; Brydegaard, Mikkel; Åkesson, Susanne

2018-04-01

We present the results of, to our knowledge, the first Lidar study applied to continuous and simultaneous monitoring of aerial insects, bats and birds. It illustrates how common patterns of flight activity, e.g. insect swarming around twilight, depend on predation risk and other constraints acting on the faunal components. Flight activity was monitored over a rice field in China during one week in July 2016, using a high-resolution Scheimpflug Lidar system. The monitored Lidar transect was about 520 m long and covered approximately 2.5 m3. The observed biomass spectrum was bimodal, and targets were separated into insects and vertebrates in a categorization supported by visual observations. Peak flight activity occurred at dusk and dawn, with a 37 min time difference between the bat and insect peaks. Hence, bats started to feed in declining insect activity after dusk and stopped before the rise in activity before dawn. A similar time difference between insects and birds may have occurred, but it was not obvious, perhaps because birds were relatively scarce. Our observations are consistent with the hypothesis that flight activity of bats is constrained by predation in bright light, and that crepuscular insects exploit this constraint by swarming near to sunset/sunrise to minimize predation from bats.

Investigating Vietnam's ornamental bird trade: implications for transmission of zoonoses.

PubMed

Edmunds, Kelly; Roberton, Scott I; Few, Roger; Mahood, Simon; Bui, Phuong L; Hunter, Paul R; Bell, Diana J

2011-03-01

Global wildlife trade is financially lucrative, frequently illegal and increases the risk for zoonotic disease transmission. This paper presents the first interdisciplinary study of Vietnam's illegal wild bird trade focussing on those aspects which may contribute to the transmission of diseases such as Highly Pathogenic Avian Influenza (HPAI) H5N1. Comparing January 2009 data with that of May 2007, we found a five-fold increase to 9,117 birds on sale in Hanoi. Ninety-five percent of Hanoian bird vendors appear unaware of trade regulations and across Vietnam vendors buy birds sourced outside of their province. Approximately 25% of the species common to Vietnam's bird trade are known to be HPAI H5N1 susceptible. The anthropogenic movement of birds within the trade chain and the range of HPAI-susceptible species, often traded alongside poultry, increase the risk Vietnam's bird trade presents for the transmission of pathogens such as HPAI H5N1. These results will assist in the control and monitoring of emerging zoonotic diseases and conservation of Southeast Asia's avifauna.

Evaluation of indirect blood pressure monitoring in awake and anesthetized red-tailed hawks (Buteo jamaicensis): effects of cuff size, cuff placement, and monitoring equipment.

PubMed

Zehnder, Ashley M; Hawkins, Michelle G; Pascoe, Peter J; Kass, Philip H

2009-09-01

To compare Doppler and oscillometric methods of indirect arterial blood pressure (IBP) with direct arterial measurements in anesthetized and awake red-tailed hawks. Prospective, randomized, blinded study. Six, sex unknown, adult red-tailed hawks. Birds were anesthetized and IBP measurements were obtained by oscillometry (IBP-O) and Doppler (IBP-D) on the pectoral and pelvic limbs using three cuffs of different width based on limb circumference: cuff 1 (20-30% of circumference), cuff 2 (30-40%), and cuff 3 (40-50%). Direct arterial pressure measurements were obtained from the contralateral superficial ulnar artery. Indirect blood pressure measurements were compared to direct systolic arterial pressure (SAP) and mean arterial pressure (MAP) during normotension and induced states of hypotension and hypertension. Measurements were also obtained in awake, restrained birds. Three-way anova, linear regression and Bland-Altman analyses were used to evaluate the IBP-D data. Results are reported as mean bias (95% confidence intervals). The IBP-O monitor reported errors during 54% of the measurements. Indirect blood pressure Doppler measurements were most accurate with cuff 3 and were comparable to MAP with a bias of 2 (-9, 13 mmHg). However, this cuff consistently underestimated SAP with a bias of 33 (19, 48 mmHg). Variability in the readings within and among birds was high. There was no significant difference between sites of cuff placement. Awake birds had SAP, MAP and diastolic arterial pressure that were 56, 43, and 38 mmHg higher than anesthetized birds. Indirect blood pressure (oscillometric) measurements were unreliable in red-tailed hawks. Indirect blood pressure (Doppler) measurements were closer to MAP measurements than SAP measurements. There was slightly better agreement with the use of cuff 3 on either the pectoral or pelvic limbs. Awake, restrained birds have significantly higher arterial pressures than those under sevoflurane anesthesia.

Visual guidance of forward flight in hummingbirds reveals control based on image features instead of pattern velocity.

PubMed

Dakin, Roslyn; Fellows, Tyee K; Altshuler, Douglas L

2016-08-02

Information about self-motion and obstacles in the environment is encoded by optic flow, the movement of images on the eye. Decades of research have revealed that flying insects control speed, altitude, and trajectory by a simple strategy of maintaining or balancing the translational velocity of images on the eyes, known as pattern velocity. It has been proposed that birds may use a similar algorithm but this hypothesis has not been tested directly. We examined the influence of pattern velocity on avian flight by manipulating the motion of patterns on the walls of a tunnel traversed by Anna's hummingbirds. Contrary to prediction, we found that lateral course control is not based on regulating nasal-to-temporal pattern velocity. Instead, birds closely monitored feature height in the vertical axis, and steered away from taller features even in the absence of nasal-to-temporal pattern velocity cues. For vertical course control, we observed that birds adjusted their flight altitude in response to upward motion of the horizontal plane, which simulates vertical descent. Collectively, our results suggest that birds avoid collisions using visual cues in the vertical axis. Specifically, we propose that birds monitor the vertical extent of features in the lateral visual field to assess distances to the side, and vertical pattern velocity to avoid collisions with the ground. These distinct strategies may derive from greater need to avoid collisions in birds, compared with small insects.

Combining accuracy assessment of land-cover maps with environmental monitoring programs

USGS Publications Warehouse

Stehman, S.V.; Czaplewski, R.L.; Nusser, S.M.; Yang, L.; Zhu, Z.

2000-01-01

A scientifically valid accuracy assessment of a large-area, land-cover map is expensive. Environmental monitoring programs offer a potential source of data to partially defray the cost of accuracy assessment while still maintaining the statistical validity. In this article, three general strategies for combining accuracy assessment and environmental monitoring protocols are described. These strategies range from a fully integrated accuracy assessment and environmental monitoring protocol, to one in which the protocols operate nearly independently. For all three strategies, features critical to using monitoring data for accuracy assessment include compatibility of the land-cover classification schemes, precisely co-registered sample data, and spatial and temporal compatibility of the map and reference data. Two monitoring programs, the National Resources Inventory (NRI) and the Forest Inventory and Monitoring (FIM), are used to illustrate important features for implementing a combined protocol.

Towards the Automatic Classification of Avian Flight Calls for Bioacoustic Monitoring

PubMed Central

Bello, Juan Pablo; Farnsworth, Andrew; Robbins, Matt; Keen, Sara; Klinck, Holger; Kelling, Steve

2016-01-01

Automatic classification of animal vocalizations has great potential to enhance the monitoring of species movements and behaviors. This is particularly true for monitoring nocturnal bird migration, where automated classification of migrants’ flight calls could yield new biological insights and conservation applications for birds that vocalize during migration. In this paper we investigate the automatic classification of bird species from flight calls, and in particular the relationship between two different problem formulations commonly found in the literature: classifying a short clip containing one of a fixed set of known species (N-class problem) and the continuous monitoring problem, the latter of which is relevant to migration monitoring. We implemented a state-of-the-art audio classification model based on unsupervised feature learning and evaluated it on three novel datasets, one for studying the N-class problem including over 5000 flight calls from 43 different species, and two realistic datasets for studying the monitoring scenario comprising hundreds of thousands of audio clips that were compiled by means of remote acoustic sensors deployed in the field during two migration seasons. We show that the model achieves high accuracy when classifying a clip to one of N known species, even for a large number of species. In contrast, the model does not perform as well in the continuous monitoring case. Through a detailed error analysis (that included full expert review of false positives and negatives) we show the model is confounded by varying background noise conditions and previously unseen vocalizations. We also show that the model needs to be parameterized and benchmarked differently for the continuous monitoring scenario. Finally, we show that despite the reduced performance, given the right conditions the model can still characterize the migration pattern of a specific species. The paper concludes with directions for future research. PMID:27880836

Mass depopulation of laying hens in whole barns with liquid carbon dioxide: evaluation of welfare impact.

PubMed

Turner, P V; Kloeze, H; Dam, A; Ward, D; Leung, N; Brown, E E L; Whiteman, A; Chiappetta, M E; Hunter, D B

2012-07-01

Appropriate emergency disaster preparedness is a key priority for agricultural agencies to allow effective response to serious avian disease outbreaks. There is a need to develop rapid, humane, and safe depopulation techniques for poultry that are widely applicable across a range of farm settings. Whole barn depopulation with carbon dioxide (CO(2)) has been investigated as a humane and efficient means of killing large numbers of birds in the event of a reportable disease outbreak. It has also been considered as a method for depopulating barns containing end-of-lay hens, particularly when there is limited local slaughter and rendering capacity. Determining the best method of humanely killing large flocks of birds remains problematic and is being investigated by a coordinated international effort. While whole barn depopulation using CO(2) inhalation has been explored, physiologic responses of chickens have not been characterized in field settings and assessment of animal welfare is hampered without this information. In this study, 12 cull laying hens were surgically instrumented with telemetry transmitters to record electroencephalographs, electrocardiographs, body temperature, and activity during 2 large-scale field CO(2) euthanasia trials of end-of-lay hens. The day following surgery, instrumented hens were placed in barns with other birds, barns were sealed, and animals were killed by CO(2) inhalation delivered via a specially designed liquid CO(2) manifold. Instrumented birds were monitored by infrared thermography, and ambient temperature, CO(2), and O(2) concentrations were recorded. Results from these studies indicate that instrumented hens lost consciousness within 2 min of CO(2) levels reaching 18 to 20%. Mild to moderate head shaking, gasping, and 1 to 2 clonic muscle contractions were noted in hens before unconsciousness; however, brain death followed rapidly (<5 min). Evaluation of welfare costs and benefits suggest clear advantages over catching and transporting cull hens for slaughter. The financial costs with this method are greater, however, than those estimated for traditional slaughter techniques. Results of these studies are being used to develop national protocols for whole barn depopulation of hens by CO(2) inhalation.

Final report: Initial ecosystem response of salt marshes to ditch plugging and pool creation: Experiments at Rachel Carson National Wildlife Refuge (Maine)

USGS Publications Warehouse

Adamowicz, S.C.; Roman, C.T.

2002-01-01

This study evaluates the response of three salt marshes, associated with the Rachel Carson National Wildlife Refuge (Maine), to the practice of ditch plugging. Drainage ditches, originally dug to drain the marsh for mosquito control or to facilitate salt hay farming, are plugged with marsh peat in an effort to impound water upstream of the plug, raise water table levels in the marsh, and increase surface water habitat. At two study sites, Moody Marsh and Granite Point Road Marsh, ditch plugs were installed in spring 2000. Monitoring of hydrology, vegetation, nekton and bird utilization, and marsh development processes was conducted in 1999, before ditch plugging, and then in 2000 and 2001 (all parameters except nekton), after ditch plugging. Each study site had a control marsh that was monitored simultaneously with the plugged marsh, and thus, we employed a BACI study design (before, after, control, impact). A third site, Marshall Point Road Marsh, was plugged in 1998. Monitoring of the plugged and control sites was conducted in 1999 and 2000, with limited monitoring in 2001, thus there was no ?before? plug monitoring. With ditch plugging, water table levels increased toward the marsh surface and the areal extent of standing water increased. Responding to a wetter substrate, a vegetation change from high marsh species (e.g., Spartina patens) to those more tolerant of flooded conditions (e.g., Spartina alterniflora) was noted at two of the three ditch plugged sites. Initial response of the nekton community (fishes and decapod crustaceans) was evaluated by monitoring utilization of salt marsh pools using a 1m2 enclosure trap. In general, nekton species richness, density, and community structure remained unchanged following ditch plugging at the Moody and Granite Point sites. At Marshall Point, species richness and density (number of individuals per m2) were significantly greater in the experimental plugged marsh than the control marsh (<2% of the control marsh was open water habitat vs. 11% of the plugged marsh). The response of birds, categorized as waterfowl & waterbirds, shorebirds & wading birds, gulls & terns, and miscellaneous (raptors, passerines, other), was variable. Following ditch plugging, bird species richness increased at the Granite Point site (1999 pre-plug = 15.4, 2000 post-plug = 26.2, 2001 post-plug = 38.7). Because of a low sample size at Moody Marsh, reliable statements on species richness cannot be made. Density of birds (no. of birds per ha) remained unchanged with ditch plugging at Granite Point Marsh, although there was a strong, but not statistically significant, trend toward increased density. This study only reports on initial responses of marsh functions to ditch plugging. Monitoring should continue at these sites, and perhaps at additional sites, for the next decade or so. A monitoring plan is recommended. Long-term monitoring will include evaluation of salt marsh development processes using SET (surface elevation table) methodology. There is concern, although not confirmed, that as ditch-plugged marshes become wetter and marsh grass production declines their ability to keep pace with sea level rise could be jeopardized. It is suggested that ditch plugging should be considered an experimental marsh management technique. Additional monitoring on the physical and habitat responses of ditch-plugged marshes is required, along with assessments of other techniques aimed at restoring open water habitat to the marsh surface.

Bird migration flight altitudes studied by a network of operational weather radars.

PubMed

Dokter, Adriaan M; Liechti, Felix; Stark, Herbert; Delobbe, Laurent; Tabary, Pierre; Holleman, Iwan

2011-01-06

A fully automated method for the detection and quantification of bird migration was developed for operational C-band weather radar, measuring bird density, speed and direction as a function of altitude. These weather radar bird observations have been validated with data from a high-accuracy dedicated bird radar, which was stationed in the measurement volume of weather radar sites in The Netherlands, Belgium and France for a full migration season during autumn 2007 and spring 2008. We show that weather radar can extract near real-time bird density altitude profiles that closely correspond to the density profiles measured by dedicated bird radar. Doppler weather radar can thus be used as a reliable sensor for quantifying bird densities aloft in an operational setting, which--when extended to multiple radars--enables the mapping and continuous monitoring of bird migration flyways. By applying the automated method to a network of weather radars, we observed how mesoscale variability in weather conditions structured the timing and altitude profile of bird migration within single nights. Bird density altitude profiles were observed that consisted of multiple layers, which could be explained from the distinct wind conditions at different take-off sites. Consistently lower bird densities are recorded in The Netherlands compared with sites in France and eastern Belgium, which reveals some of the spatial extent of the dominant Scandinavian flyway over continental Europe.

Bird migration flight altitudes studied by a network of operational weather radars

PubMed Central

Dokter, Adriaan M.; Liechti, Felix; Stark, Herbert; Delobbe, Laurent; Tabary, Pierre; Holleman, Iwan

2011-01-01

A fully automated method for the detection and quantification of bird migration was developed for operational C-band weather radar, measuring bird density, speed and direction as a function of altitude. These weather radar bird observations have been validated with data from a high-accuracy dedicated bird radar, which was stationed in the measurement volume of weather radar sites in The Netherlands, Belgium and France for a full migration season during autumn 2007 and spring 2008. We show that weather radar can extract near real-time bird density altitude profiles that closely correspond to the density profiles measured by dedicated bird radar. Doppler weather radar can thus be used as a reliable sensor for quantifying bird densities aloft in an operational setting, which—when extended to multiple radars—enables the mapping and continuous monitoring of bird migration flyways. By applying the automated method to a network of weather radars, we observed how mesoscale variability in weather conditions structured the timing and altitude profile of bird migration within single nights. Bird density altitude profiles were observed that consisted of multiple layers, which could be explained from the distinct wind conditions at different take-off sites. Consistently lower bird densities are recorded in The Netherlands compared with sites in France and eastern Belgium, which reveals some of the spatial extent of the dominant Scandinavian flyway over continental Europe. PMID:20519212

Comparison of bird community indices for riparian restoration planning and monitoring

USGS Publications Warehouse

Young, Jock S.; Ammon, Elisabeth M.; Weisburg, Peter J.; Dilts, Thomas E.; Newton, Wesley E.; Wong-Kone, Diane C.; Heki, Lisa G.

2013-01-01

The use of a bird community index that characterizes ecosystem integrity is very attractive to conservation planners and habitat managers, particularly in the absence of any single focal species. In riparian areas of the western USA, several attempts at arriving at a community index signifying a functioning riparian bird community have been made previously, mostly resorting to expert opinions or national conservation rankings for species weights. Because extensive local and regional bird monitoring data were available for Nevada, we were able to develop three different indices that were derived empirically, rather than from expert opinion. We formally examined the use of three species weighting schemes in comparison with simple species richness, using different definitions of riparian species assemblage size, for the purpose of predicting community response to changes in vegetation structure from riparian restoration. For the three indices, species were weighted according to the following criteria: (1) the degree of riparian habitat specialization based on regional data, (2) the relative conservation ranking of landbird species, and (3) the degree to which a species is under-represented compared to the regional species pool for riparian areas. To evaluate the usefulness of these indices for habitat restoration planning and monitoring, we modeled them using habitat variables that are expected to respond to riparian restoration efforts, using data from 64 sampling sites in the Walker River Basin in Nevada and California. We found that none of the species-weighting schemes performed any better as an index for evaluating overall habitat condition than using species richness alone as a community index. Based on our findings, the use of a fairly complete list of 30–35 riparian specialists appears to be the best indicator group for predicting the response of bird communities to the restoration of riparian vegetation.

A high prevalence of beak and feather disease virus in non-psittacine Australian birds.

PubMed

Amery-Gale, Jemima; Marenda, Marc S; Owens, Jane; Eden, Paul A; Browning, Glenn F; Devlin, Joanne M

2017-07-01

Beak and feather disease virus (BFDV) is a circovirus and the cause of psittacine beak and feather disease (PBFD). This disease is characterized by feather and beak deformities and is a recognized threat to endangered Psittaciformes (parrots and cockatoos). The role that non-psittacine birds may play as reservoirs of infection is unclear. This study aimed to begin addressing this gap in our knowledge of PBFD. Liver samples were collected from birds presented to the Australian Wildlife Health Centre at Zoos Victoria's Healesville Sanctuary for veterinary care between December 2014 and December 2015, and tested for BFDV DNA using polymerase chain reaction coupled with sequencing and phylogenetic analyses.Results/Key findings. Overall BFDV was detected in 38.1 % of 210 birds. BFDV was detected at high prevalence (56.2 %) in psittacine birds, in the majority of cases without any observed clinical signs of PBFD. We also found that BFDV was more common in non-psittacine species than previously recognized, with BFDV detected at 20.0 % prevalence in the non-psittacine birds tested, including species with no clear ecological association with psittacines, and without showing any detectable clinical signs of BFDV infection. Further research to determine the infectivity and transmissibility of BFDV in non-psittacine species is indicated. Until such work is undertaken the findings from this study suggest that every bird should be considered a potential carrier of BFDV, regardless of species and clinical presentation. Veterinary clinics and wildlife rehabilitation facilities caring for birds that are susceptible to PBFD should reconsider biosecurity protocols aimed at controlling BFDV.

Recommended features of protocols for long-term ecological monitoring

USGS Publications Warehouse

Oakley, Karen L.; Boudreau, Susan L.; Humphrey, Sioux-Z

2001-01-01

In 1991, the National Park Service (NPS) selected seven parks to serve as prototypes for development of a long-term ecological monitoring program. Denali National Park and Preserve was one of the prototype parks selected. The principal focus of this national program was to detect and document resource changes and to understand the forces driving those changes. One of the major tasks of each prototype park was to develop monitoring protocols. In this paper, we discuss some lessons learned and what we believe to be the most important features of protocols.One of the many lessons we have learned is that monitoring protocols vary greatly in content and format. This variation leads to confusion about what information protocols should contain and how they should be formatted. Problems we have observed in existing protocols include (1) not providing enough detail, (2) omitting critical topics (such as data management), and (3) mixing explanation with instructions. Once written, protocols often sit on the shelf to collect dust, allowing methods changes to occur without being adequately considered, tested, or documented. Because a lengthy and costly research effort is often needed to develop protocols, a vision of what the final product should look like is helpful. Based on our involvement with the prototype monitoring program for Denali (Oakley and Boudreau 2000), we recommend key features of protocols, including a scheme for linking protocols to data in the data management system and for tracking protocol revisions. A protocol system is crucial for producing long-term data sets of known quality that meet program objectives.

KSC-06pd1335

NASA Image and Video Library

2006-06-23

KENNEDY SPACE CENTER, FLA. - Radar technicians adjust two bird detection radars near Launch Pad 39B before the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Dimitri Gerondidakis

KSC-06pd1332

NASA Image and Video Library

2006-06-22

KENNEDY SPACE CENTER, FLA. - Bird detection radar is set up near Launch Pad 39B before the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Gianni Woods

KSC-06pd1333

NASA Image and Video Library

2006-06-22

KENNEDY SPACE CENTER, FLA. - Radar technicians set up bird detection radar near Launch Pad 39B before the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Gianni Woods

KSC-06pd1334

NASA Image and Video Library

2006-06-23

KENNEDY SPACE CENTER, FLA. - Radar technicians adjust two bird detection radars near Launch Pad 39B before the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Dimitri Gerondidakis

KSC-06pd1336

NASA Image and Video Library

2006-06-23

KENNEDY SPACE CENTER, FLA. - Radar technicians adjust two bird detection radars near Launch Pad 39B before the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Dimitri Gerondidakis

KSC-06pd1331

NASA Image and Video Library

2006-06-22

KENNEDY SPACE CENTER, FLA. - Bird detection radar is delivered near Launch Pad 39B before the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Gianni Woods

Improving the breeding bird survey

Treesearch

Jonathan Bart; Joseph B. Buchanan; Bob Altman

2005-01-01

We investigated increasing the number of Breeding Bird Survey (BBS) routes and reducing potential bias as ways to increase the number of species adequately monitored by the BBS in the Pacific Northwest. Estimates of place-to-place variance in trends were used to assess the effects of increasing the number of additional BBS routes. Increasing the number of BBS routes...

Effects of bird-feeding activities on the health of wild birds

PubMed Central

Horn, David J; Hogan, Brianna M; Hubble, Cody N; Huber, Sarah J; Flamm, Joseph; Knott, Madeline; Lundstrom, Lisa; Salik, Faaria; Wassenhove, Samantha J; Wrobel, Elizabeth R

2015-01-01

Abstract Among the most popular reasons that people feed wild birds is that they want to help birds. The extent to which supplemental food helps birds, however, is not well established. From spring 2011 to spring 2014, we examined how feeding of wild birds influences the health of individual birds at forested sites in central Illinois, USA. Specifically, we compared three forested sites where we provided supplemental food with three forested sites for which no supplemental food was available and monitored changes in the individual health of birds. In addition, we determined whether any changes in bird health had occurred after feeders had been removed from sites 10 months before. Generally, the individual health of birds improved with supplemental feeding, including increased antioxidant levels, reduced stress (heterophil-to-lymphocyte ratio) and more rapid feather growth. In some species, we also found improved body condition index scores and innate immune defense. The difference among sites was not present 10 months after feeders were removed, suggesting that the impact on health was indeed related to supplemental feeding. Potential negative effects of supplemental feeding were also found, including an increase in infectious disease prevalence among individual birds at forested sites where supplemental food was offered. Birds with clear signs of pathology showed deficits in most of the physiological metrics in which birds at feeder sites typically showed improved health condition. At the peak of prevalence of infectious disease, 8.3% of all birds at feeders exhibited symptoms of conjunctivitis, pox, dermal disease or cloacal disease. We found both positive and negative impacts of wild bird feeding, and that, in general, birds that had access to supplemental food were in better physiological condition. Moreover, the negative effects we found may be mitigated by hobbyists engaging in safer bird-feeding practices. PMID:27293740

Avian botulism type E in waterbirds of Lake Michigan, 2010–2013

USGS Publications Warehouse

Chipault, Jennifer G.; White, C. LeAnn; Blehert, David S.; Jennings, Susan K.; Strom, Sean M.

2015-01-01

During 2010 to 2013, waterbird mortality surveillance programs used a shared protocol for shoreline walking surveys performed June to November at three areas in northern Lake Michigan. In 2010 and 2012, 1244 total carcasses (0.8 dead bird/km walked) and 2399 total carcasses (1.2 dead birds/km walked), respectively, were detected. Fewer carcasses were detected in 2011 (353 total carcasses, 0.2 dead bird/km walked) and 2013 (451 total carcasses, 0.3 dead bird/km walked). During 3 years, peak detection of carcasses occurred in October and involved primarily migratory diving and fish-eating birds, including long-tailed ducks (Clangula hyemalis; 2010), common loons (Gavia immer; 2012), and red-breasted mergansers (Mergus serrator; 2013). In 2011, peak detection of carcasses occurred in August and consisted primarily of summer residents such as gulls (Larus spp.) and double-crested cormorants (Phalacrocorax auritus). A subset of fresh carcasses was collected throughout each year of the study and tested for botulinum neurotoxin type E (BoNT/E). Sixty-one percent of carcasses (57/94) and 10 of 11 species collected throughout the sampling season tested positive for BoNT/E, suggesting avian botulism type E was a major cause of death for both resident and migratory birds in Lake Michigan. The variety of avian species affected by botulism type E throughout the summer and fall during all 4 years of coordinated surveillance also suggests multiple routes for bird exposure to BoNT/E in Lake Michigan.

Techniques for rearing and releasing nonmigratory cranes: Lessons from the Mississippi Sandhill Crane program

USGS Publications Warehouse

Ellis, D.H.; Olsen, Glenn H.; Gee, G.F.; Nicolich, Jane M.; O'Malley, K.E.; Nagendran, Meenakshi; Hereford, Scott G.; Range, P.; Harper, W.T.; Ingram, R.P.; Smith, D.G.

1992-01-01

Captive-reared Mississippi sandhill cranes (Grus canadensis pulla) reared at the Patuxent Wildlife Research Center (Patuxent) have been released at the Mississippi Sandhill Crane National Wildlife Refuge (MSCNWR) since 1981. Of 131 birds released through December 1990, 103 were reared by foster parents. The remaining 28 were experimentally hand-reared in 1989 and 1990. After refining release procedures, parent-reared birds have integrated into the wild flock, many have survived, and some have bred. Releases of hand-reared cranes elsewhere in the 1970's were largely unsuccessful, at least in part due to the lack of a lengthy acclimation period. A new hand-rearing protocol holds promise in producing release-worthy birds. The technique employs some features first used in the 1960's (e.g., a costume for the human caretaker and model crane heads used to train chicks to feed). In the mid-1980's, the following features were added: (1) the costumed caretaker was given a visor and feathers, (2) a taxidermic crane head or a hand puppet was held or suspended from the ceiling for use in stimulating chicks to feed, (3) a taxidermic mount of a brooding crane supplied warmth, (4) a full-sized live crane was maintained in an adjacent pen and in visual contact with neonatal young to provide an imprinting model, and (5) a small group of adult (or subadult) cranes was penned adjacent to the outdoor chick pens to provide socialization models. Recent releases of Mississippi sandhill cranes hand-reared according to this protocol and released in Mississippi have had high first-year survival rates. The now-operational technique holds promise for producing large numbers of release-worthy birds.

Thermal Imaging to Study Stress Non-invasively in Unrestrained Birds

PubMed Central

Jerem, Paul; Herborn, Katherine; McCafferty, Dominic; McKeegan, Dorothy; Nager, Ruedi

2015-01-01

Stress, a central concept in biology, describes a suite of emergency responses to challenges. Among other responses, stress leads to a change in blood flow that results in a net influx of blood to key organs and an increase in core temperature. This stress-induced hyperthermia is used to assess stress. However, measuring core temperature is invasive. As blood flow is redirected to the core, the periphery of the body can cool. This paper describes a protocol where peripheral body temperature is measured non-invasively in wild blue tits (Cyanistes caeruleus) using infrared thermography. In the field we created a set-up bringing the birds to an ideal position in front of the camera by using a baited box. The camera takes a short thermal video recording of the undisturbed bird before applying a mild stressor (closing the box and therefore capturing the bird), and the bird’s response to being trapped is recorded. The bare skin of the eye-region is the warmest area in the image. This allows an automated extraction of the maximum eye-region temperature from each image frame, followed by further steps of manual data filtering removing the most common sources of errors (motion blur, blinking). This protocol provides a time series of eye-region temperature with a fine temporal resolution that allows us to study the dynamics of the stress response non-invasively. Further work needs to demonstrate the usefulness of the method to assess stress, for instance to investigate whether eye-region temperature response is proportional to the strength of the stressor. If this can be confirmed, it will provide a valuable alternative method of stress assessment in animals and will be useful to a wide range of researchers from ecologists, conservation biologists, physiologists to animal welfare researchers. PMID:26575985

Cross-training in birds: cold and exercise training produce similar changes in maximal metabolic output, muscle masses and myostatin expression in house sparrows (Passer domesticus).

PubMed

Zhang, Yufeng; Eyster, Kathleen; Liu, Jin-Song; Swanson, David L

2015-07-01

Maximal metabolic outputs for exercise and thermogenesis in birds presumably influence fitness through effects on flight and shivering performance. Because both summit (Msum, maximum thermoregulatory metabolic rate) and maximum (MMR, maximum exercise metabolic rate) metabolic rates are functions of skeletal muscle activity, correlations between these measurements and their mechanistic underpinnings might occur. To examine whether such correlations occur, we measured the effects of experimental cold and exercise training protocols for 3 weeks on body (Mb) and muscle (Mpec) masses, basal metabolic rate (BMR), Msum, MMR, pectoralis mRNA and protein expression for myostatin, and mRNA expression of TLL-1 and TLL-2 (metalloproteinase activators of myostatin) in house sparrows (Passer domesticus). Both training protocols increased Msum, MMR, Mb and Mpec, but BMR increased with cold training and decreased with exercise training. No significant differences occurred for pectoralis myostatin mRNA expression, but cold and exercise increased the expression of TLL-1 and TLL-2. Pectoralis myostatin protein levels were generally reduced for both training groups. These data clearly demonstrate cross-training effects of cold and exercise in birds, and are consistent with a role for myostatin in increasing pectoralis muscle mass and driving organismal increases in metabolic capacities. © 2015. Published by The Company of Biologists Ltd.

Expanding the North American Breeding Bird Survey analysis to include additional species and regions

USGS Publications Warehouse

Sauer, John; Niven, Daniel; Pardieck, Keith L.; Ziolkowski, David; Link, William

2017-01-01

The North American Breeding Bird Survey (BBS) contains data for >700 bird species, but analyses often focus on a core group of ∼420 species. We analyzed data for 122 species of North American birds for which data exist in the North American Breeding Bird Survey (BBS) database but are not routinely analyzed on the BBS Summary and Analysis Website. Many of these species occur in the northern part of the continent, on routes that fall outside the core survey area presently analyzed in the United States and southern Canada. Other species not historically analyzed occur in the core survey area with very limited data but have large portions of their ranges in Mexico and south. A third group of species not historically analyzed included species thought to be poorly surveyed by the BBS, such as rare, coastal, or nocturnal species. For 56 species found primarily in regions north of the core survey area, we expanded the scope of the analysis, using data from 1993 to 2014 during which ≥3 survey routes had been sampled in 6 northern strata (Bird Conservation regions in Alaska, Yukon, and Newfoundland and Labrador) and fitting log-linear hierarchical models for an augmented BBS survey area that included both the new northern strata and the core survey area. We also applied this model to 168 species historically analyzed in the BBS that had data from these additional northern strata. For both groups of species we calculated survey-wide trends for the both core and augmented survey areas from 1993 to 2014; for species that did not occur in the newly defined strata, we computed trends from 1966 to 2014. We evaluated trend estimates in terms of established credibility criteria for BBS results, screening for imprecise trends, small samples, and low relative abundance. Inclusion of data from the northern strata permitted estimation of trend for 56 species not historically analyzed, but only 4 of these were reasonably monitored and an additional 13 were questionably monitored; 39 of these species were likely poorly monitored because of small numbers of samples or very imprecisely estimated trends. Only 4 of 66 “new” species found in the core survey area were reasonably monitored by the BBS; 20 were questionably monitored; and 42 were likely poorly monitored by the BBS because of inefficiency in precision, abundance, or sample size. The hierarchical analyses we present provide a means for reasonable inclusion of the additional species and strata in a common analysis with data from the core area, a critical step in the evolution of the BBS as a continent-scale survey. We recommend that results be presented both 1) from 1993 to the present using the expanded survey area, and 2) from 1966 to the present for the core survey area. Although most of the “new” species we analyzed were poorly monitored by the BBS during 1993–2014, continued expansion of the BBS will improve the quality of information in future analyses for these species and for the many other species presently monitored by the BBS.

Automated monitoring of medical protocols: a secure and distributed architecture.

PubMed

Alsinet, T; Ansótegui, C; Béjar, R; Fernández, C; Manyà, F

2003-03-01

The control of the right application of medical protocols is a key issue in hospital environments. For the automated monitoring of medical protocols, we need a domain-independent language for their representation and a fully, or semi, autonomous system that understands the protocols and supervises their application. In this paper we describe a specification language and a multi-agent system architecture for monitoring medical protocols. We model medical services in hospital environments as specialized domain agents and interpret a medical protocol as a negotiation process between agents. A medical service can be involved in multiple medical protocols, and so specialized domain agents are independent of negotiation processes and autonomous system agents perform monitoring tasks. We present the detailed architecture of the system agents and of an important domain agent, the database broker agent, that is responsible of obtaining relevant information about the clinical history of patients. We also describe how we tackle the problems of privacy, integrity and authentication during the process of exchanging information between agents.

Central and South West Corporation`s avian activity study - preconstruction phase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamilton, J.; Randell, S.; Bouchard, D.C.

1995-12-31

A pre-construction avian activity study at the CSW wind farm site is underway. Resident and migratory avian species are being monitored with special emphasis on the incidence of birds passing over or through the wind turbine line and within the circumference of the turbine blades. Diurnal activity is monitored by unaided visual and field glass observation, while nocturnal activity is monitored with marine radar and image intensifying optics. This report reviews the study`s design, methodology, and preliminary data. A total of 872 birds were seen in 194 hours from December 1993 to November 1994. The turkey vulture, vesper sparrow, Americanmore » kestrel, golden eagle, and white-throated swift were the species most frequently observed flying through wind turbine blade space. Monitoring will continue after construction. This is one of few studies we know of that looks at pre- and post-construction avian activity.« less

Husbandry practices employed by private aviculturists, bird markets and zoo collections, which may be conducive to fostering infectious diseases.

PubMed

Wolff, P L

1996-03-01

Zoos, quarantine stations, and bird markets, dealers and breeders are in the business of propagating or moving birds. Facilities often house and transport birds which have unknown histories of exposure to disease. As few tests are available for disease screening and monitoring in exotic avian species, familiarization with significant avian pathogens will enable the manager and veterinarian to recognize and prevent a disease outbreak. Implementing aviary management practices which minimize the spread of pathogens, in conjunction with quarantine and the proper handling of birds during shipment, can greatly reduce the threat of disease. The author reviews the husbandry practices (caging, nutrition, transport, quarantine) which can reduce the incidence and spread of infectious disease. Significant avian pathogens (bacteria, viruses, parasites) are listed, together with their host range and modes of transmission.

High priority needs for range-wide monitoring of North American landbirds

USGS Publications Warehouse

Dunn, Erica H.; Altman, B.L.; Bart, J.; Beardmore, C.J.; Berlanga, H.; Blancher, P.J.; Butcher, G.S.; Demarest, D.W.; Dettmers, R.; Hunter, W.C.; Iñigo-Elias, Eduardo E.; Panjabi, A.O.; Pashley, D.N.; Ralph, C.J.; Rich, T.D.; Rosenberg, K.V.; Rustay, C.M.; Ruth, J.M.; Will, T.C.

2005-01-01

This document is an extension of work done for the Partners in Flight North American Landbird Conservation Plan (Rich et al. 2004). The Continental Plan reviewed conservation status of the 448 native landbird species that regularly breed in the United States and Canada. Two groups of species were identified as having high conservation importance: the PIF Watch List, made up of species for which there is conservation concern, and Stewardship Spices that are particularly characteristic of regional avifaunas. In addition, continental scale monitoring needs were identified for all species. Here we extend the monitoring needs aspect of the Plan, providing additional detail and suggesting the best means of filling the gaps in broad-scale, long-term trend monitoring. This analysis and report was compiled by the Partners in Flight (PIF) Science Committee as a contribution to current work by the North American Bird Conservation Initiative to assess the status of bird population monitoring in North America and to make recommendations for improvements.

Innovative Visualizations Shed Light on Avian Nocturnal Migration

PubMed Central

Farnsworth, Andrew; Aelterman, Bart; Alves, Jose A.; Azijn, Kevin; Bernstein, Garrett; Branco, Sérgio; Desmet, Peter; Dokter, Adriaan M.; Horton, Kyle; Kelling, Steve; Kelly, Jeffrey F.; Leijnse, Hidde; Rong, Jingjing; Sheldon, Daniel; Van den Broeck, Wouter; Van Den Meersche, Jan Klaas; Van Doren, Benjamin Mark; van Gasteren, Hans

2016-01-01

Globally, billions of flying animals undergo seasonal migrations, many of which occur at night. The temporal and spatial scales at which migrations occur and our inability to directly observe these nocturnal movements makes monitoring and characterizing this critical period in migratory animals’ life cycles difficult. Remote sensing, therefore, has played an important role in our understanding of large-scale nocturnal bird migrations. Weather surveillance radar networks in Europe and North America have great potential for long-term low-cost monitoring of bird migration at scales that have previously been impossible to achieve. Such long-term monitoring, however, poses a number of challenges for the ornithological and ecological communities: how does one take advantage of this vast data resource, integrate information across multiple sensors and large spatial and temporal scales, and visually represent the data for interpretation and dissemination, considering the dynamic nature of migration? We assembled an interdisciplinary team of ecologists, meteorologists, computer scientists, and graphic designers to develop two different flow visualizations, which are interactive and open source, in order to create novel representations of broad-front nocturnal bird migration to address a primary impediment to long-term, large-scale nocturnal migration monitoring. We have applied these visualization techniques to mass bird migration events recorded by two different weather surveillance radar networks covering regions in Europe and North America. These applications show the flexibility and portability of such an approach. The visualizations provide an intuitive representation of the scale and dynamics of these complex systems, are easily accessible for a broad interest group, and are biologically insightful. Additionally, they facilitate fundamental ecological research, conservation, mitigation of human–wildlife conflicts, improvement of meteorological products, and public outreach, education, and engagement. PMID:27557096

Assessing gull abundance and food availability in urban parking lots

USGS Publications Warehouse

Clark, Daniel E.; Whitney, Jillian J.; MacKenzie, Kenneth G.; Koenen, Kiana K. G.; DeStefano, Stephen

2015-01-01

Feeding birds is a common activity throughout the world; yet, little is known about the extent of feeding gulls in urban areas. We monitored 8 parking lots in central Massachusetts, USA, during the fall and winter of 2011 to 2013 in 4 monitoring sessions to document the number of gulls present, the frequency of human–gull feeding interactions, and the effectiveness of signage and direct interaction in reducing human-provisioned food. Parking lots were divided between “education” and “no-education” lots. In education lots, we erected signs about problems caused when people feed birds and also asked people to stop feeding birds. We did not erect signs or ask people to stop feeding birds at no-education lots. We spent >1,200 hours in parking lots (range = 136 to 200 hours per parking lot), and gulls were counted every 20 minutes. We conducted >4,000 counts, and ring-billed gulls (Lorus delawarensis) accounted for 98% of all gulls. Our educational efforts were minimally effective. There were fewer feedings (P = 0.01) in education lots during one of the monitoring sessions but significantly more gulls (P = 0.008) in education lots during 2 monitoring sessions. While there was a marginal decrease (P = 0.055) in the number of feedings after no-education lots were transformed into education lots, there was no difference in gull numbers in these lots (P = 0.16). Education appears to have some influence in reducing the number of people feeding gulls, but our efforts were not able to reduce the number of human feeders or the amount of food enough to influence the number of gulls using parking lots.

Innovative Visualizations Shed Light on Avian Nocturnal Migration.

PubMed

Shamoun-Baranes, Judy; Farnsworth, Andrew; Aelterman, Bart; Alves, Jose A; Azijn, Kevin; Bernstein, Garrett; Branco, Sérgio; Desmet, Peter; Dokter, Adriaan M; Horton, Kyle; Kelling, Steve; Kelly, Jeffrey F; Leijnse, Hidde; Rong, Jingjing; Sheldon, Daniel; Van den Broeck, Wouter; Van Den Meersche, Jan Klaas; Van Doren, Benjamin Mark; van Gasteren, Hans

2016-01-01

Globally, billions of flying animals undergo seasonal migrations, many of which occur at night. The temporal and spatial scales at which migrations occur and our inability to directly observe these nocturnal movements makes monitoring and characterizing this critical period in migratory animals' life cycles difficult. Remote sensing, therefore, has played an important role in our understanding of large-scale nocturnal bird migrations. Weather surveillance radar networks in Europe and North America have great potential for long-term low-cost monitoring of bird migration at scales that have previously been impossible to achieve. Such long-term monitoring, however, poses a number of challenges for the ornithological and ecological communities: how does one take advantage of this vast data resource, integrate information across multiple sensors and large spatial and temporal scales, and visually represent the data for interpretation and dissemination, considering the dynamic nature of migration? We assembled an interdisciplinary team of ecologists, meteorologists, computer scientists, and graphic designers to develop two different flow visualizations, which are interactive and open source, in order to create novel representations of broad-front nocturnal bird migration to address a primary impediment to long-term, large-scale nocturnal migration monitoring. We have applied these visualization techniques to mass bird migration events recorded by two different weather surveillance radar networks covering regions in Europe and North America. These applications show the flexibility and portability of such an approach. The visualizations provide an intuitive representation of the scale and dynamics of these complex systems, are easily accessible for a broad interest group, and are biologically insightful. Additionally, they facilitate fundamental ecological research, conservation, mitigation of human-wildlife conflicts, improvement of meteorological products, and public outreach, education, and engagement.

The Influence of Weather and Lemmings on Spatiotemporal Variation in the Abundance of Multiple Avian Guilds in the Arctic

PubMed Central

Robinson, Barry G.; Franke, Alastair; Derocher, Andrew E.

2014-01-01

Climate change is occurring more rapidly in the Arctic than other places in the world, which is likely to alter the distribution and abundance of migratory birds breeding there. A warming climate can provide benefits to birds by decreasing spring snow cover, but increases in the frequency of summer rainstorms, another product of climate change, may reduce foraging opportunities for insectivorous birds. Cyclic lemming populations in the Arctic also influence bird abundance because Arctic foxes begin consuming bird eggs when lemmings decline. The complex interaction between summer temperature, precipitation, and the lemming cycle hinder our ability to predict how Arctic-breeding birds will respond to climate change. The main objective of this study was to investigate the relationship between annual variation in weather, spring snow cover, lemming abundance and spatiotemporal variation in the abundance of multiple avian guilds in a tundra ecosystem in central Nunavut, Canada: songbirds, shorebirds, gulls, loons, and geese. We spatially stratified our study area based on vegetation productivity, terrain ruggedness, and freshwater abundance, and conducted distance sampling to estimate strata-specific densities of each guild during the summers of 2010–2012. We also monitored temperature, rainfall, spring snow cover, and lemming abundance each year. Spatial variation in bird abundance matched what was expected based on previous ecological knowledge, but weather and lemming abundance also significantly influenced the abundance of some guilds. In particular, songbirds were less abundant during the cool, wet summer with moderate snow cover, and shorebirds and gulls declined with lemming abundance. The abundance of geese did not vary over time, possibly because benefits created by moderate spring snow cover were offset by increased fox predation when lemmings were scarce. Our study provides an example of a simple way to monitor the correlation between weather, spring snow cover, lemming abundance, and spatiotemporal variations in Arctic-breeding birds. PMID:24983471

The influence of weather and lemmings on spatiotemporal variation in the abundance of multiple avian guilds in the arctic.

PubMed

Robinson, Barry G; Franke, Alastair; Derocher, Andrew E

2014-01-01

Climate change is occurring more rapidly in the Arctic than other places in the world, which is likely to alter the distribution and abundance of migratory birds breeding there. A warming climate can provide benefits to birds by decreasing spring snow cover, but increases in the frequency of summer rainstorms, another product of climate change, may reduce foraging opportunities for insectivorous birds. Cyclic lemming populations in the Arctic also influence bird abundance because Arctic foxes begin consuming bird eggs when lemmings decline. The complex interaction between summer temperature, precipitation, and the lemming cycle hinder our ability to predict how Arctic-breeding birds will respond to climate change. The main objective of this study was to investigate the relationship between annual variation in weather, spring snow cover, lemming abundance and spatiotemporal variation in the abundance of multiple avian guilds in a tundra ecosystem in central Nunavut, Canada: songbirds, shorebirds, gulls, loons, and geese. We spatially stratified our study area based on vegetation productivity, terrain ruggedness, and freshwater abundance, and conducted distance sampling to estimate strata-specific densities of each guild during the summers of 2010-2012. We also monitored temperature, rainfall, spring snow cover, and lemming abundance each year. Spatial variation in bird abundance matched what was expected based on previous ecological knowledge, but weather and lemming abundance also significantly influenced the abundance of some guilds. In particular, songbirds were less abundant during the cool, wet summer with moderate snow cover, and shorebirds and gulls declined with lemming abundance. The abundance of geese did not vary over time, possibly because benefits created by moderate spring snow cover were offset by increased fox predation when lemmings were scarce. Our study provides an example of a simple way to monitor the correlation between weather, spring snow cover, lemming abundance, and spatiotemporal variations in Arctic-breeding birds.

Terrestrial liming benefits birds in an acidified forest in the northeast.

PubMed

Pabian, Sarah E; Brittingham, Margaret C

2007-12-01

Studies in Europe have reported negative effects of acid deposition on forest birds, and research in North America has identified links between forest bird abundance and rates of acid deposition. We examined the bird community in an acidified forest in central Pennsylvania (USA) and evaluated the effects of terrestrial lime application on birds. We used a before-after control-impact (BACI) study design, with one year of observation before (2003) and three years after lime application (2004, 2005, and 2006). Between the 2003 and 2004 field seasons, 4500 kg/ha of dolomitic lime were applied to two of four 100-ha watersheds. Each year, we monitored bird abundance and Ovenbird (Seiurus aurocapilla) eggshell thickness and territory size. Soil and snail abundance data were also collected. The bird community and territory size results indicated that the study area may be providing low-quality habitat for forest birds, perhaps as a result of acid deposition. We found lower forest bird abundances than have been found in less acidified areas of Pennsylvania, and larger Ovenbird territory sizes than have been found in other studies. We found a significant positive relationship between soil calcium and bird abundance, indicating that soil calcium may affect bird abundance. Liming increased soil calcium and pH and led to increased snail and bird abundances. After liming, bird abundance was positively related to snail abundance. No significant changes occurred in Ovenbird territory size or eggshell thickness. Our results suggest that acid deposition could be responsible for reduced bird abundance, and that liming is a potential mitigation technique.

EPA Traceability Protocol for Assay and Certification of Gaseous Calibration Standards

EPA Pesticide Factsheets

EPA's air monitoring regulations require the use of Protocol Gases to set air pollution monitors. This protocol balances the government's need for accuracy with the producers' need for flexibility, low cost, and minimum external oversight.

50 CFR 15.26 - Approval of cooperative breeding programs.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 1 2014-10-01 2014-10-01 false Approval of cooperative breeding programs. 15.26 Section 15.26 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE... program requested for the exotic bird species, including: (i) A breeding protocol, including a genetic...

50 CFR 15.26 - Approval of cooperative breeding programs.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 50 Wildlife and Fisheries 1 2013-10-01 2013-10-01 false Approval of cooperative breeding programs. 15.26 Section 15.26 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE... program requested for the exotic bird species, including: (i) A breeding protocol, including a genetic...

50 CFR 15.26 - Approval of cooperative breeding programs.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 50 Wildlife and Fisheries 1 2012-10-01 2012-10-01 false Approval of cooperative breeding programs. 15.26 Section 15.26 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE... program requested for the exotic bird species, including: (i) A breeding protocol, including a genetic...

Surgical and immediate postrelease mortality of harlequin ducks (Histrionicus histrionicus) implanted with abdominal radio transmitters with percutaneous antennae

USGS Publications Warehouse

Mulcahy, Daniel M.; Esler, Daniel N.

1999-01-01

Radiotelemetry is an essential tool in the study of free-ranging bird populations, and a variety of transmitter-attachment methods have been developed. A promising new method is abdominal implantation of a transmitter with a percutaneous antenna. Researchers using this technique should be concerned about and aware of mortality during surgery and during the immediate postrelease period (the 14-day period following surgery). Of 307 radio-implant surgeries performed between 1995 and 1997 in harlequin ducks (Histrionicus histrionicus), 7 (2.3%) deaths were documented during surgery or anesthetic recovery. Of 295 birds released with implanted radios, 10 (3.4%) died during the immediate postrelease period. Modifications to anesthetic procedures used in the 204 surgeries performed in 1996 and 1997 reduced mortality to 1.5% during surgery and 1.5% during the immediate postrelease period. Anesthetic modifications included intubation of all birds, placement of birds on an elevated platform that allowed the head to rest at a level lower than the body during surgery, placement of a heated water blanket under the birds during surgery, monitoring of body temperature, and use of electrocardiogram and Doppler ultrasound to monitor heart rates and arrhythmias. Low levels of mortality associated with abdominal implantation of radio transmitters may be unavoidable, but mortality can be minimized with adjustments to anesthetic technique.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keller, David C.; Fresquez, Philip R.; Hansen, Leslie A.

Breeding bird abundance, species richness, evenness, diversity, composition, productivity, and survivorship were determined near a high-explosive detonation site at Los Alamos National Laboratory, New Mexico, USA, during pre-operation (1997-1999) and operation (2000-2014) periods. The operation periods consisted of detonations (<23 kg in yield and <3 per breeding season) in open air (2000-2002), within foam containment (2003-2006) and within steel vessel containment (2007-2014) systems; the latter two were employed to reduce noise and dispersal of high-explosives residues. A total of 2952 bird captures, representing 80 species, was recorded during 18 years of mist net operations using the Monitoring Avian Productivity andmore » Survivorship protocol. Individuals captured were identified to species, aged, sexed, and banded during May through August of each year. There were no significant differences (p > 0.05) in mean avian abundance and species evenness in any of the operation periods as compared with the pre-operation period. Species richness and diversity were significantly higher (p < 0.05) during the vessel containment period (2007-2014) than the pre-operation period. The time period of this study coincided with a wildfire (2000), a bark beetle infestation (2002), and two periods of drought (Nov 1999-Mar 2004 and Dec 2005-Dec 2014) that affected the study area. Furthermore, analysis of aerial photos determined that the average percent canopy cover of mature ponderosa pines (Pinus ponderosa) within 100 feet of mist net sites declined from 12% to 3% between 1991 and 2014 and the percent cover of shrubs slightly increased.« less

Low West Nile virus circulation in wild birds in an area of recurring outbreaks in Southern France.

PubMed

Balança, Gilles; Gaidet, Nicolas; Savini, Giovanni; Vollot, Benjamin; Foucart, Antoine; Reiter, Paul; Boutonnier, Alain; Lelli, Rossella; Monicat, François

2009-12-01

West Nile virus (WNV) has a history of irregular but recurrent epizootics in countries of Mediterranean and of Central and Eastern Europe. We have investigated the temporal enzootic activity of WNV in free-ranging birds over a 3-year period in an area with sporadic occurrences of WNV outbreaks in Southern France. We conducted an intensive serologic survey on several wild bird populations (>4000 serum samples collected from 3300 birds) selected as potential indicators of the WNV circulation. WNV antibodies were detected by seroneutralization and/or plaque reduction neutralization in house sparrows, black-billed magpies, and scops owls, but these species appeared to be insufficient indicators of WNV circulation. Overall seroprevalence was low (<1%), including in birds that had been potentially exposed to the virus during recent outbreaks. However, the detection of a seroconversion in one bird, as well as the detection of seropositive birds in all years of our monitoring, including juveniles, indicate a constant annual circulation of WNV at a low level, including in years without any detectable emergence of WN fever in horses or humans.

A comparison of two methods for surveying mortality of beached birds in British Columbia.

PubMed Central

Stephen, C; Burger, A E

1994-01-01

Systematic surveys of beached birds are often limited in their ability to classify the causes of death of the carcasses recovered. Two methods of determining the cause of death of seabirds encountered during surveys of beaches of southwestern Vancouver Island, British Columbia, are compared. Birds were either subjected to external visual examinations by volunteer beach surveyors or submitted for gross postmortem examination by a veterinarian. The reliance on external examination of birds on beaches often prevented the accurate classification of the reproductive status and cause of death of the birds collected, but was valuable for describing the species, locations, and numbers of birds affected. The use of gross postmortem examinations of carcasses allowed for a more refined classification of the cause of death, as well as providing reliable descriptions of the bodily condition and sex of the birds examined. However, almost one half of the carcasses encountered were unsuitable for necropsy because of scavenging and decomposition. It is concluded that a combination of field and necropsy observations provides a useful method with which to monitor the pattern of mortality of beached seabirds. PMID:7994705

Remote Sensing of Selected Water-Quality Indicators with the Hyperspectral Imager for the Coastal Ocean (HICO) Sensor

DTIC Science & Technology

2014-01-01

monitoring wind -driven re-suspension events (Chen 2006), a predictive factor for patho- gens such as E. coli (Nevers and Whitman 2005), and a...properties where HICO imagery could be acquired as well as along the major salinity gradients of each estuary (Figure 2). A Sea- Bird 25 CTD (Sea- Bird

Optimizing the duration of point counts for monitoring trends in bird populations

Treesearch

Jared Verner

1988-01-01

Minute-by-minute analysis of point counts of birds in mixed-conifer forests in the Sierra National Forest, central California, showed that cumulative counts of species and individuals increased in a curvilinear fashion but did not reach asymptotes after 10 minutes of counting. Comparison of the expected number of individuals counted per hour with various combinations...

Decline of the Black Tern (Chlidonias niger) population in the Klamath Basin, Oregon, 2001-2010

Treesearch

Jaime L. Stephens; Sarah M. Rockwell; C. John Ralph; John D Alexander

2015-01-01

We monitored the Black Tern (Childonias niger) population at Agency and Upper Klamath Lakes, in the Klamath Basin, Oregon, from 2001–2010. We estimated that the population of adult Black Terns declined at these 2 joined waterbodies by 8.4% annually. In contrast, our analysis of Breeding Bird Survey data for the Bird...

Habitat relationships of landbirds in the Northern Region, USDA Forest Service

Treesearch

Richard L. Hutto; Jock S. Young

1999-01-01

A series of first-generation habitat-relationships models for 83 bird species were detected in a 3-year study on point counts conducted in association with the USDA Forest Service's Northern Region Landbird Monitoring Program. The models depict probabilities of detection for each of the bird species on 100-m-radius, 10-minute point counts conducted across a series...

Comparing Phytophthora ramorum diagnostic protocols for the national Sudden Oak death stream monitoring program

Treesearch

W. Sutton; E.M. Hansen; P. Reeser; A. Kanaskie

2008-01-01

Oregon was a participant in the pilot test of the national stream monitoring protocol for SOD. We routinely and continuously monitor about 50 streams in and near the SOD quarantine area in southwest Oregon using foliage baits. For the national protocol, we added six additional streams beyond the area of known infestation, and compared results from different diagnostic...

Bird associations with shrubsteppe plant communities at the proposed reference repository location in southeastern Washington

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schuler, C.A.; Rickard, W.H.; Sargeant, G.A.

1988-03-01

This report provides information on te seasonal use of shrubsteppe vegetation by bird species at the RRL. Bird abundance and distribution were studied at the RRL to ensure that the DOE monitored migratory bird species pursuant to the Migratory Bird Treaty Act and to assess potential impacts of site characterization activities on bird populations. Birds were counted on two transects that together sampled an areas of 1.39 km/sup 2/. The relative abundance of birds, species richness, seasonal distribution, and the association of breeding shrubsteppe birds with major vegetation types were determined from Janurary through December 1987. Only 38 species weremore » counted during 82 surveys. Total bird density during the nesting season (March-June) was 42.96 birdskm/sup 2/ and the density for the entire year was 26.74 birdskm/sup 2/. The characteristic nesting birds in shrubsteppe habitats were western meadowlark, sage sparrow, burrowing owl, mourning dove, horned lark, long-billed curlew, lark sparrow, and loggerhead shrike. Western meadowlark and sage sparrows were the most abundant breeding birds with an average density of 11.25 and 7.76 birdskm/sup 2/, respectively. Seasonal distribution of birds varied with species, but most species were present from March to September. Distribution and abunandance of nesting birds were correlated with habitat type. About 63% of the habitat surveyed was sagebrush, 26% was cheatgrass, and 11% was spiny hopsage. Sagebrush habitat supproted a greeater total bird density than cheatgrass or hopsage habitats. Sage sparrows were closely associated with sagebrush habitats, while western meadowlarks showed no strong habitat affinities. 22 refs., 9 figs., 6 tabs« less

Miscellaneous chemical toxins

USGS Publications Warehouse

Friend, M.

1999-01-01

The previous chapters provide information about some of the chemical toxins that have lethal effects on wild birds. The material presented in Section 7, Chemical Toxins, is far from comprehensive because wild birds are poisoned by a wide variety of toxic substances. Also, monitoring of wild bird mortality is not yet organized so that diagnostic findings can be extended to reflect the relative impacts among the types of toxins, within populations, or among species, geographic areas, and time. The data that are available are not collectively based on random sampling, nor do specimen collection and submission follow methodical assessment methods. Instead, most data simply document individual bird poisoning events. The inherent biases in this information include the species of birds observed dead (large birds in open areas are more likely to be observed dead than small forest birds); the species of birds likely to be submitted for analysis (bald eagles are more likely to be submitted than house sparrows); collection sites (agricultural fields are more likely to be observed than urban environments); geographic area of the country; season; reasons for submissions; and other variables. Nevertheless, findings from individual events reflect the causes of mortality associated with those events and collectively identify chemical toxins that repeatedly cause bird mortalities which result in carcass collection and sub

KSC-06pd1337

NASA Image and Video Library

2006-06-23

KENNEDY SPACE CENTER, FLA. - Two bird detection radars have been set up near Launch Pad 39B to get ready for the July 1 launch of Space Shuttle Discovery on mission STS-121. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/Dimitri Gerondidakis

Forest Soil Disturbance Monitoring Protocol: Volume I: Rapid assessment

Treesearch

Deborah S. Page-Dumroese; Ann M. Abbott; Thomas M. Rice

2009-01-01

This volume of the Forest Soil Disturbance Monitoring Protocol (FSDMP) describes how to monitor forest sites before and after ground disturbing management activities for physical attributes that could influence site resilience and long-term sustainability. The attributes describe surface conditions that affect site sustainability and hydrologic function. Monitoring the...

Factors related to the artificial incubation of wild bird eggs

USGS Publications Warehouse

Klimstra, Jon D.; Stebbins, Katherine R.; Heinz, Gary H.; Hoffman, David J.; Kondrad, Shannon R.

2009-01-01

Attempts to artificially incubate the eggs of wild birds have failed in many respects in duplicating the success of natural incubation. As part of a larger study we had the opportunity to artificially incubate the eggs of 22 species of birds (three domestic and 19 wild species). We report the successes and failures associated with artificial incubation of these eggs. Moisture loss varied widely, not only for Orders of birds but for similar species within an Order. Overall hatching success and success through to 90% of incubation varied for different Orders and for similar species. Humidity and temperature are critical elements in the artificial incubation of wild bird eggs and must be closely monitored throughout incubation to ensure the best possible chance of hatching. Even when these elements are addressed, artificial incubation still can not duplicate the success of incubation by the parent.

Marine birds as indicators of Arctic marine ecosystem health: linking the Northern Ecosystem Initiative to long-term studies.

PubMed

Mallory, Mark L; Gilchrist, H Grant; Braune, Birgit M; Gaston, Anthony J

2006-02-01

Marine birds are sensitive indicators of the condition of marine ecosystems in the Arctic, partly because they feed at the top of the arctic food chain. The Northern Ecosystem Initiative (NEI) recently supported four separate studies that investigated aspects of Arctic marine bird science which simultaneously addressed goals of the NEI to better understand northern ecosystems and their response to environmental stressors. The projects used both scientific and traditional knowledge to examine the relationship between sea-ice, contaminants, and the ecology of marine birds, and to transfer environmental knowledge to students. Results from these investigations confirm that changes are occurring in Arctic environments, and that these are captured through marine bird research. Collectively these studies provided new data that supported NEI objectives of monitoring the health of the Arctic ecosystem, and contributed to Canada's international obligations for Arctic science.

Virtual targeting in three-dimensional space with sound and light interference

NASA Astrophysics Data System (ADS)

Chua, Florence B.; DeMarco, Robert M.; Bergen, Michael T.; Short, Kenneth R.; Servatius, Richard J.

2006-05-01

Law enforcement and the military are critically concerned with the targeting and firing accuracy of opponents. Stimuli which impede opponent targeting and firing accuracy can be incorporated into defense systems. An automated virtual firing range was developed to assess human targeting accuracy under conditions of sound and light interference, while avoiding dangers associated with live fire. This system has the ability to quantify sound and light interference effects on targeting and firing accuracy in three dimensions. This was achieved by development of a hardware and software system that presents the subject with a sound or light target, preceded by a sound or light interference. SonyXplod. TM 4-way speakers present sound interference and sound targeting. The Martin ® MiniMAC TM Profile operates as a source of light interference, while a red laser light serves as a target. A tracking system was created to monitor toy gun movement and firing in three-dimensional space. Data are collected via the Ascension ® Flock of Birds TM tracking system and a custom National Instrument ® LabVIEW TM 7.0 program to monitor gun movement and firing. A test protocol examined system parameters. Results confirm that the system enables tracking of virtual shots from a fired simulation gun to determine shot accuracy and location in three dimensions.

National protocol framework for the inventory and monitoring of bees

USGS Publications Warehouse

Droege, Sam; Engler, Joseph D.; Sellers, Elizabeth A.; Lee O'Brien,

2016-01-01

This national protocol framework is a standardized tool for the inventory and monitoring of the approximately 4,200 species of native and non-native bee species that may be found within the National Wildlife Refuge System (NWRS) administered by the U.S. Fish and Wildlife Service (USFWS). However, this protocol framework may also be used by other organizations and individuals to monitor bees in any given habitat or location. Our goal is to provide USFWS stations within the NWRS (NWRS stations are land units managed by the USFWS such as national wildlife refuges, national fish hatcheries, wetland management districts, conservation areas, leased lands, etc.) with techniques for developing an initial baseline inventory of what bee species are present on their lands and to provide an inexpensive, simple technique for monitoring bees continuously and for monitoring and evaluating long-term population trends and management impacts. The latter long-term monitoring technique requires a minimal time burden for the individual station, yet can provide a good statistical sample of changing populations that can be investigated at the station, regional, and national levels within the USFWS’ jurisdiction, and compared to other sites within the United States and Canada. This protocol framework was developed in cooperation with the United States Geological Survey (USGS), the USFWS, and a worldwide network of bee researchers who have investigated the techniques and methods for capturing bees and tracking population changes. The protocol framework evolved from field and lab-based investigations at the USGS Bee Inventory and Monitoring Laboratory at the Patuxent Wildlife Research Center in Beltsville, Maryland starting in 2002 and was refined by a large number of USFWS, academic, and state groups. It includes a Protocol Introduction and a set of 8 Standard Operating Procedures or SOPs and adheres to national standards of protocol content and organization. The Protocol Narrative describes the history and need for the protocol framework and summarizes the basic elements of objectives, sampling design, field methods, training, data management, analysis, and reporting. The SOPs provide more detail and specific instructions for implementing the protocol framework. A central database, for managing all the resulting data is under development. We welcome use of this protocol framework by our partners, as appropriate for their bee inventory and monitoring objectives.

Vocal activity as a low cost and scalable index of seabird colony size

USGS Publications Warehouse

Borker, Abraham L.; McKown, Matthew W.; Ackerman, Joshua T.; Eagles-Smith, Collin A.; Tershy, Bernie R.; Croll, Donald A.

2014-01-01

Although wildlife conservation actions have increased globally in number and complexity, the lack of scalable, cost-effective monitoring methods limits adaptive management and the evaluation of conservation efficacy. Automated sensors and computer-aided analyses provide a scalable and increasingly cost-effective tool for conservation monitoring. A key assumption of automated acoustic monitoring of birds is that measures of acoustic activity at colony sites are correlated with the relative abundance of nesting birds. We tested this assumption for nesting Forster's terns (Sterna forsteri) in San Francisco Bay for 2 breeding seasons. Sensors recorded ambient sound at 7 colonies that had 15–111 nests in 2009 and 2010. Colonies were spaced at least 250 m apart and ranged from 36 to 2,571 m2. We used spectrogram cross-correlation to automate the detection of tern calls from recordings. We calculated mean seasonal call rate and compared it with mean active nest count at each colony. Acoustic activity explained 71% of the variation in nest abundance between breeding sites and 88% of the change in colony size between years. These results validate a primary assumption of acoustic indices; that is, for terns, acoustic activity is correlated to relative abundance, a fundamental step toward designing rigorous and scalable acoustic monitoring programs to measure the effectiveness of conservation actions for colonial birds and other acoustically active wildlife.

Maternal-Fetal Monitoring of Opioid-Exposed Pregnancies: Analysis of a Pilot Community-Based Protocol and Review of the Literature.

PubMed

Ryan, Gareth; Dooley, Joe; Windrim, Rory; Bollinger, Megan; Gerber Finn, Lianne; Kelly, Len

2017-06-01

To describe/analyse a novel, community-based prenatal monitoring protocol for opioid-exposed pregnancies developed by our centre in 2014 to optimize prenatal care for this population. A literature review of published monitoring protocols for this population is also presented. Retrospective comparison of pre-protocol (n = 215) and post-protocol (n = 251) cohorts. Medline and Embase were searched between 2000-2016 using MeSH terms: [fetal monitoring OR prenatal care] AND [opioid-related disorders OR substance-related disorders] in Medline and [fetal monitoring OR prenatal care] AND [opiate addiction OR substance abuse] in Embase, producing 518 results. Thirteen studies included protocols for monitoring opioid-exposed pregnancies. No comprehensive monitoring protocols with high-quality supporting evidence were found. We evaluated 466 opioid-exposed pregnancies, 215 before and 251 after introduction of the protocol. Since implementation, there was a significant increase in the number of opioid-exposed patients who have underwent urine drug screening (72.6% to 89.2%, P < 0.0001); a significant reduction in the number of urine drug screenings positive for illicit opioids (50.2% to 29.1%, P < 0.0001); and a significant increase in the number of patients who discontinued illicit opioid use by the time of delivery (24.7% to 39.4%, P < 0.01). There was no difference in the CS rate (27.4% vs. 26.3%, P > 0.05). There were no observed differences in the rate of preterm birth, birth weight <2500 g, or Apgar score <7 (P > 0.05). Care of women with increased opioid use during pregnancy is an important but under-studied health issue. A novel protocol for focused antenatal care provision for women with opioid-exposed pregnancies improves standard of care and maternal/fetal outcomes. Copyright © 2017. Published by Elsevier Inc.

High-intensity urban light installation dramatically alters nocturnal bird migration

PubMed Central

Horton, Kyle G.; Dokter, Adriaan M.; Klinck, Holger; Elbin, Susan B.

2017-01-01

Billions of nocturnally migrating birds move through increasingly photopolluted skies, relying on cues for navigation and orientation that artificial light at night (ALAN) can impair. However, no studies have quantified avian responses to powerful ground-based light sources in urban areas. We studied effects of ALAN on migrating birds by monitoring the beams of the National September 11 Memorial & Museum's “Tribute in Light” in New York, quantifying behavioral responses with radar and acoustic sensors and modeling disorientation and attraction with simulations. This single light source induced significant behavioral alterations in birds, even in good visibility conditions, in this heavily photopolluted environment, and to altitudes up to 4 km. We estimate that the installation influenced ≈1.1 million birds during our study period of 7 d over 7 y. When the installation was illuminated, birds aggregated in high densities, decreased flight speeds, followed circular flight paths, and vocalized frequently. Simulations revealed a high probability of disorientation and subsequent attraction for nearby birds, and bird densities near the installation exceeded magnitudes 20 times greater than surrounding baseline densities during each year’s observations. However, behavioral disruptions disappeared when lights were extinguished, suggesting that selective removal of light during nights with substantial bird migration is a viable strategy for minimizing potentially fatal interactions among ALAN, structures, and birds. Our results also highlight the value of additional studies describing behavioral patterns of nocturnally migrating birds in powerful lights in urban areas as well as conservation implications for such lighting installations. PMID:28973942

Recommended methods for monitoring change in bird populations by counting and capture of migrants

Treesearch

David J. T. Hussell; C. John Ralph

2005-01-01

Counts and banding captures of spring or fall migrants can generate useful information on the status and trends of the source populations. To do so, the counts and captures must be taken and recorded in a standardized and consistent manner. We present recommendations for field methods for counting and capturing migrants at intensively operated sites, such as bird...

Estimating equations estimates of trends

USGS Publications Warehouse

Link, W.A.; Sauer, J.R.

1994-01-01

The North American Breeding Bird Survey monitors changes in bird populations through time using annual counts at fixed survey sites. The usual method of estimating trends has been to use the logarithm of the counts in a regression analysis. It is contended that this procedure is reasonably satisfactory for more abundant species, but produces biased estimates for less abundant species. An alternative estimation procedure based on estimating equations is presented.

Birds in a Developing Area: The Need for Habitat Protection at the Landscape Scale

Treesearch

Jane A. Fitzgerald; Jonathan Bart; Harold D. Brown; Kathy Lee

2005-01-01

We used fixed-distance point counts to monitor bird populations from 1994-1998 in a rapidly urbanizing region of southwestern Missouri. Prior to the early 1990s, the rural landscape was a mosaic of forest, dolomite glades, and pasture but development proceeded rapidly in the 1990s with increased promotion of Branson, Missouri as a vacation and retirement destination....

Designing and implementing a monitoring program and the standards for conducting point counts

Treesearch

C. John Ralph

1993-01-01

Choosing between the apparent plethora of methods for monitoring bird populations is a dilemma for a person contemplating beginning a monitoring program. Cooperrider et al. (1986) and Koskimies and Vaisanen (1991) describe many methods. In the Americas, three methods have been suggested as standard (Butcher 1992). They are: point counts for determining habitat...

Strategies for the conservation monitoring of resident landbirds and wintering neotropical migrants in the Americas

Treesearch

Steven C. Latta; C. John Ralph; Geoffrey R. Geupel

2005-01-01

Many international, regional, and local partner organizations have agreed in the need to establish long-term bird monitoring and research programs in the Americas. However, the challenge of developing national or international monitoring programs is difficult often because of the lack of qualified biologists or other resources in key regions. More fundamentally,...

Avian Semen Collection by Cloacal Massage and Isolation of DNA from Sperm.

PubMed

Kucera, Aurelia C; Heidinger, Britt J

2018-02-05

Collection of semen may be useful for a wide range of applications including studies involving sperm quality, sperm telomere dynamics, and epigenetics. Birds are widely used subjects in biological research and are ideal for studies involving repeated sperm samples. However, few resources are currently available for those wishing to learn how to collect and extract DNA from avian sperm. Here we describe cloacal massage, a gentle, non-invasive manual technique for collecting avian sperm. Although this technique is established in the literature, it can be difficult to learn from the available descriptions. We also provide information for extracting DNA from avian semen using a commercial extraction kit with modifications. Cloacal massage can be easily used on any small- to medium-sized male bird in reproductive condition. Following collection, the semen can be used immediately for motility assays, or frozen for DNA extraction following the protocol described herein. This extraction protocol was refined for avian sperm and has been successfully used on samples collected from several passerine species (Passer domesticus, Spizella passerina, Haemorhous mexicanus, and Turdus migratorius) and one columbid (Columba livia).

Monitoring Least Bitterns (Ixobrychis exilis) in Vermont: Detection probability and occupancy modeling

USGS Publications Warehouse

Cherukuri, Aswini; Strong, Allan; Donovan, Therese M.

2018-01-01

Ixobrychus exillis (Least Bittern) is listed as a species of high concern in the North American Waterbird Conservation Plan and is a US Fish and Wildlife Service migratory bird species of conservation concern in the Northeast. Little is known about the population of Least Bitterns in the Northeast because of their low population density, tendency to nest in dense wetland vegetation, and secretive behavior. Urban and agricultural development is expected to encroach on and degrade suitable wetland habitat; however, we cannot predict the effects on Least Bittern populations without more accurate information on their abundance and distribution. We conducted surveys of wetlands in Vermont to assess the efficacy of a monitoring protocol and to establish baseline Least Bittern abundance and distribution data at a sample of 29 wetland sites. Surveys yielded detections of 31 individuals at 15 of 29 sites across 3 biophysical regions and at 5 sites where occupancy had not been previously reported. Probability of occupancy was positively related to wetland size and number of patches, though the relationships were not strong enough to conclude if these were true determinants of occupancy. Call—response broadcast surveys yielded 30 detections, while passive surveys yielded 13. Call—response broadcasts (P = 0.897) increased the rate of detection by 55% compared to passive surveys (P = 0.577). Our results suggest that call—response broadcast surveys are an effective means of assessing Least Bittern occupancy and may reduce bias in long-term monitoring programs.

Tuberculosis in wild birds: implications for captive birds

USGS Publications Warehouse

Converse, K. A.; Dein, F. J.

1990-01-01

The geographic distribution of avian tuberculosis is widespread but the lack of visible epizootics makes assessment of its impact on wild birds difficult. Generally a low prevalence, widely-scattered, individual animal disease, avian tuberculosis is caused by the same agent in wild and domestic birds. Thus there exists the potential for disease transfer between these two groups in situations that result in direct contact such as wild animals newly captured or transferred from rehabilitation centers, and wild and captive animals intermingling in exhibit areas. During the past 7 yr, tuberculosis caused by Mycobacterium avium, was diagnosed in 64 birds submitted to the National Wildlife Health Research Center from 16 states; avian tuberculosis was the primary diagnosis in 52 of the 64 birds, while the remaining 12 isolates were incidental findings. Twenty-eight of these birds were picked up during epizootics caused by other disease agents including avian cholera, botulism type C, and lead, organophosphorus compound, and cyanide poisoning. Twelve birds were found incidental to birds collected during disease monitoring programs and research projects, and 10 birds were collected by hunters or found sick and euthanatized. Tuberculosis lesions occurred (in order of decreasing frequency) in the liver, intestine, spleen, lung, and air sacs. Several unusual morphological presentations were observed in the gizzard, shoulder joint, jugular vein, face, nares and bill, ureter and bone marrow. Infected birds were collected during all 12 mo of the yr from a variety of species in the Anseriformes, Podicipediformes, Gruiformes, and Falconiformes. Nine of the 46 known age birds were immature indicating that lesions can develop during the first year.

International trade of CITES listed bird species in China.

PubMed

Li, Linlin; Jiang, Zhigang

2014-01-01

Commercial trade of wild birds may devastate wild bird populations. Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) controls the trade of wild species listed in its appendices to avoid these species being threatened by international trade. China used to be one of the major trading countries with significant bird trade with foreign countries; on the other hand, China is a country with unique avian fauna, many Important Bird Areas and critically endangered bird species. What is the role of the country in world wild bird trade? What kind of insights can we extract from trade records for improving future management of wild bird trade in the country? We retrieved and analyzed international trade records of the CITES listed bird species of China from 1981 to 2010 from the CITES Trade Database maintained by United Nations Environment Program and World Conservation Monitoring Centre (UNEP-WCMC). We found that: (1) International trade of live birds in China peaked during the late 1990s, then decreased to the level before the surge of trade in a few years, the trade dynamics of wild birds may be affected by governmental policy and the outbreak of avian influenza during the period. (2) Most frequently traded CITES Appendix listed birds in China were parrots, most of which were exotic species to the country. (3) Birds were mainly traded for commercial purpose. Exotic birds in trade were mainly captive-bred while the most Chinese birds traded internationally were captured from the wild. Since many bird species in international trade are threatened to extinction, China should take stricter measures on importing of wild-captured birds and should collaborate with the countries of original in the international bird trade to avoid unsustainable harvesting of wild birds. It is urgent for China to carry out population surveys on those domestic bird species once in significant international trade and to make better conservation decisions based on population status of those birds. In addition, more scientific researchers should be encouraged to participate in the wildlife trade management to avoid misreporting trade data or biased analyses of the trade records.

International Trade of CITES Listed Bird Species in China

PubMed Central

Li, Linlin; Jiang, Zhigang

2014-01-01

Commercial trade of wild birds may devastate wild bird populations. Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) controls the trade of wild species listed in its appendices to avoid these species being threatened by international trade. China used to be one of the major trading countries with significant bird trade with foreign countries; on the other hand, China is a country with unique avian fauna, many Important Bird Areas and critically endangered bird species. What is the role of the country in world wild bird trade? What kind of insights can we extract from trade records for improving future management of wild bird trade in the country? We retrieved and analyzed international trade records of the CITES listed bird species of China from 1981 to 2010 from the CITES Trade Database maintained by United Nations Environment Program and World Conservation Monitoring Centre (UNEP-WCMC). We found that: (1) International trade of live birds in China peaked during the late 1990s, then decreased to the level before the surge of trade in a few years, the trade dynamics of wild birds may be affected by governmental policy and the outbreak of avian influenza during the period. (2) Most frequently traded CITES Appendix listed birds in China were parrots, most of which were exotic species to the country. (3) Birds were mainly traded for commercial purpose. Exotic birds in trade were mainly captive-bred while the most Chinese birds traded internationally were captured from the wild. Since many bird species in international trade are threatened to extinction, China should take stricter measures on importing of wild-captured birds and should collaborate with the countries of original in the international bird trade to avoid unsustainable harvesting of wild birds. It is urgent for China to carry out population surveys on those domestic bird species once in significant international trade and to make better conservation decisions based on population status of those birds. In addition, more scientific researchers should be encouraged to participate in the wildlife trade management to avoid misreporting trade data or biased analyses of the trade records. PMID:24586234

Avian influenza vaccines and vaccination in birds.

PubMed

Capua, Ilaria; Alexander, Dennis J

2008-09-12

Although the use of vaccines against avian influenza viruses in birds has been discouraged over the years, the unprecedented occurrence of outbreaks caused by avian influenza (AI) viruses in recent times has required review of this policy. A variety of products are now available on the market, ranging from inactivated conventional to live recombinant products. The general consensus on the use of vaccination is that if complying to GMP standards and properly administered, birds will be more resistant to field challenge and will exhibit reduced shedding levels in case of infection. However, viral circulation may still occur in a clinically healthy vaccinated population. This may result in an endemic situation and in the emergence of antigenic variants. In order to limit these risks, monitoring programmes enabling the detection of field exposure in vaccinated populations are recommended by international organisations and are essential to allow the continuation of international trade. Adequate management of a vaccination campaign, including monitoring, improved biosecurity and restriction is essential for the success of any control program for AI.

Development of protocols to inventory or monitor wildlife, fish, or rare plants

Treesearch

David Vesely; Brenda C. McComb; Christina D. Vojta; Lowell H. Suring; Jurai Halaj; Richard S. Holthausen; Benjamin Zuckerberg; Patricia M. Manley

2006-01-01

The purpose of this technical guide (hereafter referred to as the Species Protocol Technical Guide) is to provide guidelines for developing inventory and monitoring (I&M) protocols for wildlife, fish, and rare plants (WFRP) using the U.S. Department of Agriculture (USDA) Forest Service technical guide format.

An efficacious oral health care protocol for immunocompromised patients.

PubMed

Solomon, C S; Shaikh, A B; Arendorf, T M

1995-01-01

A twice-weekly oral and perioral examination was provided to 120 patients receiving antineoplastic therapy. Sixty patients were monitored while following the traditional hospital oral care protocol (chlorhexidine, hydrogen peroxide, sodium bicarbonate, thymol glycol, benzocaine mouthrinse, and nystatin). The mouth care protocol was then changed (experimental protocol = chlorhexidine, benzocaine lozenges, amphotericin B lozenges), and patients were monitored until the sample size matched that of the hospital mouth care regime. There was a statistically significant reduction in oral complications upon introduction and maintenance of the experimental protocol.

Comparison of acoustic recorders and field observers for monitoring tundra bird communities

USGS Publications Warehouse

Vold, Skyler T.; Handel, Colleen M.; McNew, Lance B.

2017-01-01

Acoustic recorders can be useful for studying bird populations but their efficiency and accuracy should be assessed in pertinent ecological settings before use. We investigated the utility of an acoustic recorder for monitoring abundance of tundra‐breeding birds relative to point‐count surveys in northwestern Alaska, USA, during 2014. Our objectives were to 1) compare numbers of birds and species detected by a field observer with those detected simultaneously by an acoustic recorder; 2) evaluate how detection probabilities for the observer and acoustic recorder varied with distance of birds from the survey point; and 3) evaluate whether avian guild‐specific detection rates differed between field observers and acoustic recorders relative to habitat. Compared with the observer, the acoustic recorder detected fewer species (βMethod = −0.39 ± 0.07) and fewer individuals (βMethod = −0.56 ± 0.05) in total and for 6 avian guilds. Discrepancies were attributed primarily to differences in effective area surveyed (91% missed by device were >100 m), but also to nonvocal birds being missed by the recorder (55% missed <100 m were silent). The observer missed a few individuals and one species detected by the device. Models indicated that relative abundance of various avian guilds was associated primarily with maximum shrub height and less so with shrub cover and visual obstruction. The absence of a significant interaction between survey method (observer vs. acoustic recorder) and any habitat characteristic suggests that traditional point counts and acoustic recorders would yield similar inferences about ecological relationships in tundra ecosystems. Pairing of the 2 methods could increase survey efficiency and allow for validation and archival of survey results.

Wood Storks of the Birdsville Colony and swamps of the Savannah River Plant: 1986 annual report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coulter, M.C.

1987-04-01

The Savannah River Ecology Laboratory (SREL) Wood Stork program is a long-term program including various facets. It is primarily aimed at determining the importance of the SRSS to foraging storks and managing the Kathwood Foraging Ponds. In order to accomplish this we have examined the breeding biology of the birds at the colony to determine when the birds may have maximum food demand. We have also studied foraging ecology of the birds in order to gain insights that would allow us to develop a more effective management plan for the Kathwood ponds. More specifically, the objectives of the work carriedmore » out in 1986 were: (1) to determine the locations of foraging sites of Wood Storks from the Birdsville colony and examine year-to-year variation in sites used; (2) to characterize in more detail the habitat, vegetation, water quality and prey density/biomass at these sites; (3) to observe the breeding birds to determine the times when food demands at the colony are greatest; (4) to examine the movement of storks from the rookery to foraging sites and relate seasonal trends to the breeding biology; (5) to examine the importance of the SRSS to foraging Wood Storks; and (6) to examine the movements of individual birds to determine the generality of the observed patterns. At the Kathwood ponds we monitored water quality to ensure that water conditions were optimal for the stocked aquatic prey, determined when to make the ponds available to the storks, and monitored the numbers of storks and other wading birds at the ponds. In this report, I present the results of the studies carried out during 1986.« less

Wood storks of the Birdsville colony and swamps of the Savannah River Plant

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coulter, M.C.

1989-08-01

The Savannah River Ecology Laboratory (SREL) Wood Stork program is a long-term program including various facets. It is primarily aimed at determining the importance of the SRSS to foraging storks and managing the Kathwood Foraging Ponds. In order to accomplish this, we have examined the breeding biology of the birds at the colony to determine when the birds may have maximum food demand. We have also studied foraging ecology of the birds in order to gain insights that would allow us to develop a more effective management plan for the Kathwood ponds. More specifically, the objectives of the work carriedmore » out in 1988 were: (1) to determine the locations of foraging sites of Wood Storks from the Birdsville colony and examine year-to-year variation in sites used; (2) to characterize in more detail the habitat, vegetation, water quality and prey density/biomass at these sites; (3) to observe the breeding birds to determine times when food demands at the colony are greatest; (4) to examine the movements of storks from the rookery to foraging sites and related seasonal trends to the breeding biology; (5) to examine the importance of the SRSS to foraging Wood Storks; and (6) to examine the movements of individual birds to determine the generality of the observed patterns. At the Kathwood ponds we monitored water quality to ensure that water conditions were optimal for the stocked aquatic ponds, determined when to make the ponds available to the storks, and monitored the numbers of storks and other wading birds at the ponds. In this report, I present the results of these studies conducted in 1988. 30 refs., 107 figs., 81 tabs.« less

Combining Breeding Bird Survey and distance sampling to estimate density of migrant and breeding birds

USGS Publications Warehouse

Somershoe, S.G.; Twedt, D.J.; Reid, B.

2006-01-01

We combined Breeding Bird Survey point count protocol and distance sampling to survey spring migrant and breeding birds in Vicksburg National Military Park on 33 days between March and June of 2003 and 2004. For 26 of 106 detected species, we used program DISTANCE to estimate detection probabilities and densities from 660 3-min point counts in which detections were recorded within four distance annuli. For most species, estimates of detection probability, and thereby density estimates, were improved through incorporation of the proportion of forest cover at point count locations as a covariate. Our results suggest Breeding Bird Surveys would benefit from the use of distance sampling and a quantitative characterization of habitat at point count locations. During spring migration, we estimated that the most common migrant species accounted for a population of 5000-9000 birds in Vicksburg National Military Park (636 ha). Species with average populations of 300 individuals during migration were: Blue-gray Gnatcatcher (Polioptila caerulea), Cedar Waxwing (Bombycilla cedrorum), White-eyed Vireo (Vireo griseus), Indigo Bunting (Passerina cyanea), and Ruby-crowned Kinglet (Regulus calendula). Of 56 species that bred in Vicksburg National Military Park, we estimated that the most common 18 species accounted for 8150 individuals. The six most abundant breeding species, Blue-gray Gnatcatcher, White-eyed Vireo, Summer Tanager (Piranga rubra), Northern Cardinal (Cardinalis cardinalis), Carolina Wren (Thryothorus ludovicianus), and Brown-headed Cowbird (Molothrus ater), accounted for 5800 individuals.

A Bioacoustic Record of a Conservancy in the Mount Kenya Ecosystem

PubMed Central

Muchiri, David; Njoroge, Peter

2016-01-01

Abstract Background Environmental degradation is a major threat facing ecosystems around the world. In order to determine ecosystems in need of conservation interventions, we must monitor the biodiversity of these ecosystems effectively. Bioacoustic approaches offer a means to monitor ecosystems of interest in a sustainable manner. In this work we show how a bioacoustic record from the Dedan Kimathi University wildlife conservancy, a conservancy in the Mount Kenya ecosystem, was obtained in a cost effective manner. A subset of the dataset was annotated with the identities of bird species present since they serve as useful indicator species. These data reveal the spatial distribution of species within the conservancy and also point to the effects of major highways on bird populations. This dataset will provide data to train automatic species recognition systems for birds found within the Mount Kenya ecosystem. Such systems are necessary if bioacoustic approaches are to be employed at the large scales necessary to influence wildlife conservation measures. New information We provide acoustic recordings from the Dedan Kimathi University wildlife conservancy, a conservancy in the Mount Kenya ecosystem, obtained using a low cost acoustic recorder. A total of 2701 minute long recordings are provided including both daytime and nighttime recordings. We present an annotation of a subset of the daytime recordings indicating the bird species present in the recordings. The dataset contains recordings of at least 36 bird species. In addition, the presence of a few nocturnal species within the conservancy is also confirmed. PMID:27932917

Nesting success of grassland and savanna birds on reclaimed surface coal mines of the midwestern United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galligan, E.W.; DeVault, T.L.; Lima, S.L.

2006-12-15

Reclaimed surface coal mines in southwestern Indiana support many grassland and shrub/savanna bird species of conservation concern. We examined the nesting success of birds on these reclaimed mines to assess whether such 'unnatural' places represent productive breeding habitats for such species. We established eight study sites on two large, grassland-dominated mines in southwestern Indiana and classified them into three categories (open grassland, shrub/savanna, and a mixture of grassland and shrub/savanna) based on broad vegetation and landscape characteristics. During the 1999 and 2000 breeding seasons, we found and monitored 911 nests of 31 species. Daily nest survival for the most commonlymore » monitored grassland species ranged from 0.903 (Dickcissel, Spiza americana) to 0.961 (Grasshopper Sparrow, Ammodramus savannarum). Daily survival estimates for the dominant shrub/savanna nesting species ranged from 0.932 (Brown Thrasher, Toxostoma rufum) to 0.982 (Willow Flycatcher, Empidonax traillii). Vegetation and landscape effects on nesting success were minimal, and only Eastern Meadowlarks (Sturnella magna) showed a clear time-of-season effect, with greater nesting success in the first half of the breeding season. Rates of Brown-headed Cowbird (Molothrus ater) parasitism were only 2.1% for grassland species and 12.0% for shrub/savanna species. The nesting success of birds on reclaimed mine sites was comparable to that in other habitats, indicating that reclaimed habitats on surface mines do not necessarily represent reproductive traps for birds.« less

A Bioacoustic Record of a Conservancy in the Mount Kenya Ecosystem.

PubMed

Wa Maina, Ciira; Muchiri, David; Njoroge, Peter

2016-01-01

Environmental degradation is a major threat facing ecosystems around the world. In order to determine ecosystems in need of conservation interventions, we must monitor the biodiversity of these ecosystems effectively. Bioacoustic approaches offer a means to monitor ecosystems of interest in a sustainable manner. In this work we show how a bioacoustic record from the Dedan Kimathi University wildlife conservancy, a conservancy in the Mount Kenya ecosystem, was obtained in a cost effective manner. A subset of the dataset was annotated with the identities of bird species present since they serve as useful indicator species. These data reveal the spatial distribution of species within the conservancy and also point to the effects of major highways on bird populations. This dataset will provide data to train automatic species recognition systems for birds found within the Mount Kenya ecosystem. Such systems are necessary if bioacoustic approaches are to be employed at the large scales necessary to influence wildlife conservation measures. We provide acoustic recordings from the Dedan Kimathi University wildlife conservancy, a conservancy in the Mount Kenya ecosystem, obtained using a low cost acoustic recorder. A total of 2701 minute long recordings are provided including both daytime and nighttime recordings. We present an annotation of a subset of the daytime recordings indicating the bird species present in the recordings. The dataset contains recordings of at least 36 bird species. In addition, the presence of a few nocturnal species within the conservancy is also confirmed.

Techniques for monitoring pileated woodpeckers.

Treesearch

Evelyn L Bull; Richard S. Holthausen; Marie G. Henjum

1990-01-01

Methods of locating pileated woodpeckers (Dryocopus pileatus) are described, including imitating pileated woodpecker vocalizations, identifying nest and roost trees, and finding foraging signs. Populations of pileated woodpeckers can be monitored by using (1) density of breeding pairs, (2) reproduction, and (3) presence or absence of birds. The...

Bird mortality associated with wind turbines at the Buffalo Ridge wind resource area, Minnesota

USGS Publications Warehouse

Osborn, R.G.; Higgins, K.F.; Usgaard, R.E.; Dieter, C.D.; Neiger, R.D.

2000-01-01

Recent technological advances have made wind power a viable source of alternative energy production and the number of windplant facilities has increased in the United States. Construction was completed on a 73 turbine, 25 megawatt windplant on Buffalo Ridge near Lake Benton, Minnesota in Spring 1994. The number of birds killed at existing windplants in California caused concern about the potential impacts of the Buffalo Ridge facility on the avian community. From April 1994 through Dec. 1995 we searched the Buffalo Ridge windplant site for dead birds. Additionally, we evaluated search efficiency, predator scavenging rates and rate of carcass decomposition. During 20 mo of monitoring we found 12 dead birds. Collisions with wind turbines were suspected for 8 of the 12 birds. During observer efficiency trials searchers found 78.8% of carcasses. Scavengers removed 39.5% of carcasses during scavenging trials. All carcasses remained recognizable during 7 d decomposition trials. After correction for biases we estimated that approximately 36 ?? 12 birds (<1 dead bird per turbine) were killed at the Buffalo Ridge windplant in 1 y. Although windplants do not appear to be more detrimental to birds than other man-made structures, proper facility sitting is an important first consideration in order to avoid unnecessary fatalities.

Summary of intrinsic and extrinsic factors affecting detection probability of marsh birds

USGS Publications Warehouse

Conway, C.J.; Gibbs, J.P.

2011-01-01

Many species of marsh birds (rails, bitterns, grebes, etc.) rely exclusively on emergent marsh vegetation for all phases of their life cycle, and many organizations have become concerned about the status and persistence of this group of birds. Yet, marsh birds are notoriously difficult to monitor due to their secretive habits. We synthesized the published and unpublished literature and summarized the factors that influence detection probability of secretive marsh birds in North America. Marsh birds are more likely to respond to conspecific than heterospecific calls, and seasonal peak in vocalization probability varies among co-existing species. The effectiveness of morning versus evening surveys varies among species and locations. Vocalization probability appears to be positively correlated with density in breeding Virginia Rails (Rallus limicola), Soras (Porzana carolina), and Clapper Rails (Rallus longirostris). Movement of birds toward the broadcast source creates biases when using count data from callbroadcast surveys to estimate population density. Ambient temperature, wind speed, cloud cover, and moon phase affected detection probability in some, but not all, studies. Better estimates of detection probability are needed. We provide recommendations that would help improve future marsh bird survey efforts and a list of 14 priority information and research needs that represent gaps in our current knowledge where future resources are best directed. ?? Society of Wetland Scientists 2011.

Standards for documenting and monitoring bird reintroduction projects

USGS Publications Warehouse

Sutherland, W.J.; Armstrong, D.; Butchart, S.H.M.; Earnhardt, J.M.; Ewen, J.; Jamieson, I.; Jones, C.G.; Lee, R.; Newbery, P.; Nichols, J.D.; Parker, K.A.; Sarrazin, F.; Seddon, P.J.; Shah, N.; Tatayah, V.

2010-01-01

It would be much easier to assess the effectiveness of different reintroduction methods, and so improve the success of reintroductions, if there was greater standardization in documentation of the methods and outcomes. We suggest a series of standards for documenting and monitoring the methods and outcomes associated with reintroduction projects for birds. Key suggestions are: documenting the planned release before it occurs, specifying the information required on each release, postrelease monitoring occurring at standard intervals of 1 and 5 years (and 10 for long-lived species), carrying out a population estimate unless impractical, distinguishing restocked and existing individuals when supplementing populations, and documenting the results. We suggest these principles would apply, largely unchanged, to other vertebrate classes. Similar methods could be adopted for invertebrates and plants with appropriate modification. We suggest that organizations publically state whether they will adopt these approaches when undertaking reintroductions. Similar standardization would be beneficial for a wide range of topics in environmental monitoring, ecological studies, and practical conservation. ??2010 Wiley Periodicals, Inc.

Dietary acylated starch improves performance and gut health in necrotic enteritis challenged broilers.

PubMed

M'Sadeq, Shawkat A; Wu, Shu-Biao; Swick, Robert A; Choct, Mingan

2015-10-01

Resistant starch has been reported to act as a protective agent against pathogenic organisms in the gut and to encourage the proliferation of beneficial organisms. This study examined the efficacy of acetylated high amylose maize starch (SA) and butyralated high-amylose maize starch (SB) in reducing the severity of necrotic enteritis (NE) in broilers under experimental challenge. A total of 720 one-day-old male Ross 308 chicks were assigned to 48 floor pens with a 2 × 4 factorial arrangement of treatments. Factors were a) challenge: no or yes; and b) feed additive: control, antibiotics (AB), SA, or SB. Birds were challenged with Eimeria and C. perfringens according to a previously reported protocol. On d 24 and 35, challenged birds had lower (P < 0.001) livability (LV), weight gain (WG), and feed intake (FI) compared to unchallenged birds. Challenged birds fed SA and SB had higher FI and WG at d 24 and 35 (P < 0.05) compared to birds fed the control diet, while being significantly lower than those fed AB. Unchallenged birds fed SA or SB had higher FI at d 24 and 35 compared to those fed the control diet (P < 0.05). Birds fed SB had increased (P < 0.001) jejunal villus height/crypt depth (VH:CD) ratios at d 15, increased ileal (P < 0.001) and caecal (P < 0.001) butyrate levels at d 15 and 24, and decreased (P < 0.01) caecal pH at d 15. Birds fed SA had increased (P < 0.001) ileal acetate content at d 24 and decreased (P < 0.01) caecal pH at d 15. These results demonstrated that dietary acylated starch improved WG in birds challenged with necrotic enteritis. Depending on the acid used, starch acylation also offers a degree of specificity in short chain fatty acid (SCFA) delivery to the lower intestinal tract which improves gut health. © 2015 Poultry Science Association Inc.

Collision effects of wind-power generators and other obstacles on birds.

PubMed

Drewitt, Allan L; Langston, Rowena H W

2008-01-01

There is extensive literature on avian mortality due to collision with man-made structures, including wind turbines, communication masts, tall buildings and windows, power lines, and fences. Many studies describe the consequences of bird-strike rather than address the causes, and there is little data based on long-term, standardized, and systematic assessments. Despite these limitations, it is apparent that bird-strike is a significant cause of mortality. It is therefore important to understand the effects of this mortality on bird populations. The factors which determine avian collision risk are described, including location, structural attributes, such as height and the use of lighting, weather conditions, and bird morphology and behavior. The results of incidental and more systematic observations of bird-strike due to a range of structures are presented and the implications of collision mortality for bird populations, particularly those of scarce and threatened species susceptible to collisions, are discussed. Existing measures for reducing collision mortality are described, both generally and specifically for each type of structure. It is concluded that, in some circumstances, collision mortality can adversely affect bird populations, and that greater effort is needed to derive accurate estimates of mortality levels locally, regionally, and nationally to better assess impacts on avian populations. Priority areas for future work are suggested, including further development of remote technology to monitor collisions, research into the causes of bird-strike, and the design of new, effective mitigation measures.

Performance test and verification of an off-the-shelf automated avian radar tracking system.

PubMed

May, Roel; Steinheim, Yngve; Kvaløy, Pål; Vang, Roald; Hanssen, Frank

2017-08-01

Microwave radar is an important tool for observation of birds in flight and represents a tremendous increase in observation capability in terms of amount of surveillance space that can be covered at relatively low cost. Based on off-the-shelf radar hardware, automated radar tracking systems have been developed for monitoring avian movements. However, radar used as an observation instrument in biological research has its limitations that are important to be aware of when analyzing recorded radar data. This article describes a method for exploring the detection capabilities of a dedicated short-range avian radar system used inside the operational Smøla wind-power plant. The purpose of the testing described was to find the maximum detection range for various sized birds, while controlling for the effects of flight tortuosity, flight orientation relative to the radar and ground clutter. The method was to use a dedicated test target in form of a remotely controlled unmanned aerial vehicle (UAV) with calibrated radar cross section (RCS), which enabled the design of virtually any test flight pattern within the area of interest. The UAV had a detection probability of 0.5 within a range of 2,340 m from the radar. The detection performance obtained by the RCS-calibrated test target (-11 dBm 2 , 0.08 m 2 RCS) was then extrapolated to find the corresponding performance of differently sized birds. Detection range depends on system sensitivity, the environment within which the radar is placed and the spatial distribution of birds. The avian radar under study enables continuous monitoring of bird activity within a maximum range up to 2 km dependent on the size of the birds in question. While small bird species may be detected up to 0.5-1 km, larger species may be detected up to 1.5-2 km distance from the radar.

Soundscapes to Landscapes (S2L): Monitoring Animal Biodiversity from Space Using Citizen Scientists

NASA Astrophysics Data System (ADS)

Clark, M. L.; Salas, L.; Goetz, S. J.

2017-12-01

Soundscapes to Landscapes (S2L) is a citizen science project with the broad goal of advancing scientific understanding of biodiversity and conservation using a combination of new and existing spaceborne sensors. The prototype phase of this project is focused on modeling bird diversity at the watershed scale in Sonoma County, California. The main objectives are to: 1) involve citizen scientists in the collection of in situ field information on bird diversity; 2) assess the accuracy and precision of bioacoustics for the detection and monitoring of individual species and richness; 3) test the predictive strength of spaceborne imaging spectroscopy, lidar, synthetic aperture radar (SAR) sensors for spatial modeling of species occupancy and overall species richness; and 4) use occupancy/richness maps to better understand factors related to conserving animal diversity. In the prototype field campaign, citizen scientists (birders, undergraduate students) deployed portable sound recorders for 3-4 days in various habitats in a local watershed. Over 50,200 minutes (866 hours) of "soundscape" recordings were collected over 3 months. Through a series of "bird blitzes", citizen scientists used the ARBIMON II web-based system to listen to spectrograms (time vs. frequency) of 1-minute recordings, tag bird calls for identifiable species, validate presence/absence of bird species, draw training-set boxes around well-formed calls, and help evaluate Random Forests machine-learning model performance. Bird-call models were applied to all soundscapes to identify presence/absence of 10 indicator species. Another phase of this project involves species distribution modeling in conjunction with C- and L-band SAR imagery, simulated Hyperspectral Infrared Imager (HyspIRI) and Global Ecosystem Dynamics Investigation (GEDI) large-footprint lidar data. Metrics derived from these data provide unique, wall-to-wall information on vegetation chemistry (HyspIRI) and three-dimensional structure (GEDI, SAR) that are linked with soundscape-derived bird data to model species occupancy and overall richness at the landscape scale.

Diversity and distribution of avian malaria and related haemosporidian parasites in captive birds from a Brazilian megalopolis.

PubMed

Chagas, Carolina Romeiro Fernandes; Valkiūnas, Gediminas; de Oliveira Guimarães, Lilian; Monteiro, Eliana Ferreira; Guida, Fernanda Junqueira Vaz; Simões, Roseli França; Rodrigues, Priscila Thihara; de Albuquerque Luna, Expedito José; Kirchgatter, Karin

2017-02-17

The role of zoos in conservation programmes has increased significantly in last decades, and the health of captive animals is essential to guarantee success of such programmes. However, zoo birds suffer from parasitic infections, which often are caused by malaria parasites and related haemosporidians. Studies determining the occurrence and diversity of these parasites, aiming better understanding infection influence on fitness of captive birds, are limited. In 2011-2015, the prevalence and diversity of Plasmodium spp. and Haemoproteus spp. was examined in blood samples of 677 captive birds from the São Paulo Zoo, the largest zoo in Latin America. Molecular and microscopic diagnostic methods were used in parallel to detect and identify these infections. The overall prevalence of haemosporidians was 12.6%. Parasites were mostly detected by the molecular diagnosis, indicating that many birds harbour subclinical or abortive infections. In this project, birds of 17 orders (almost half of all the orders currently accepted in taxonomy of birds), 29 families, and 122 species, were tested, detecting positive individuals in 27% of bird species. Birds from the Anatidae were the most prevalently infected (64.7% of all infected animals). In all, infections with parasites of the genus Plasmodium (overall prevalence 97.6%) predominated when compared to those of the genus Haemoproteus (2.4%). In total, 14 cytochrome b (cytb) lineages of Plasmodium spp. and 2 cytb lineages of Haemoproteus spp. were recorded. Eight lineages were new. One of the reported lineages was broad generalist while others were reported in single or a few species of birds. Molecular characterization of Haemoproteus ortalidum was developed. This study shows that many species of birds are at risk in captivity. It is difficult to stop haemosporidian parasite transmission in zoos, but is possible to reduce the infection rate by treating the infected animals or/and while keeping them in facilities free from mosquitoes. Protocols of quarantine should be implemented whenever an animal is transferred between bird maintaining institutions. This is the first survey of haemosporidians in captive birds from different orders maintained in zoos. It is worth emphasizing the necessity of applying practices to control these parasites in management and husbandry of animals in captivity.

Long-term seafloor monitoring at an open ocean aquaculture site in the western Gulf of Maine, USA: development of an adaptive protocol.

PubMed

Grizzle, R E; Ward, L G; Fredriksson, D W; Irish, J D; Langan, R; Heinig, C S; Greene, J K; Abeels, H A; Peter, C R; Eberhardt, A L

2014-11-15

The seafloor at an open ocean finfish aquaculture facility in the western Gulf of Maine, USA was monitored from 1999 to 2008 by sampling sites inside a predicted impact area modeled by oceanographic conditions and fecal and food settling characteristics, and nearby reference sites. Univariate and multivariate analyses of benthic community measures from box core samples indicated minimal or no significant differences between impact and reference areas. These findings resulted in development of an adaptive monitoring protocol involving initial low-cost methods that required more intensive and costly efforts only when negative impacts were initially indicated. The continued growth of marine aquaculture is dependent on further development of farming methods that minimize negative environmental impacts, as well as effective monitoring protocols. Adaptive monitoring protocols, such as the one described herein, coupled with mathematical modeling approaches, have the potential to provide effective protection of the environment while minimize monitoring effort and costs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Postmortem evaluation of reintroduced migratory whooping cranes in eastern North America.

PubMed

Cole, Gretchen A; Thomas, Nancy J; Spalding, Marilyn; Stroud, Richard; Urbanek, Richard P; Hartup, Barry K

2009-01-01

Reintroduction of endangered Whooping Cranes (Grus americana) in eastern North America has successfully established a migratory population between Wisconsin and Florida. Eighty birds (47 males, 33 females) were released between 2001 and 2006, and all birds were tracked following release with satellite and/or VHF monitoring devices. By the end of 2006, 17 deaths (12 males, five females) were recorded from this population. Postmortem findings and field data were evaluated for each bird to determine the cause of death. Causes included predation (n=8, 47%), trauma (n=2, 12%), and degenerative disease (n=1, 6%); the cause of death was undetermined for 35% (n=6) of the birds. Based on physical evidence, the primary predator of the birds was the bobcat (Lynx rufus). Limited roosting habitat availability or bird behavior were likely prime factors in the occurrence of predation. Traumatic injuries and mortality were caused by gunshot, electrical utility lines, and an unknown source. The lone case of degenerative disease was due to chronic exertional myopathy associated with translocation. Available postmortem testing did not indicate the presence of infectious disease in this limited sample.

Bird Conservation Implementation and Integration in the Americas: Proceedings of the Third International Partners in Flight Conference. 2002 March 20-24; Asilomar, California, Volume 1 and 2

Treesearch

C. John Ralph; Terrell D. Rich

2005-01-01

These two volumes contain in part papers presented at the Third International Partners in Flight Conference: A Workshop on Bird Conservation Implementation and Integration, which was held 20-24 March 2002 at the Asilomar Conference Center in Monterey, California. The conference gathered together researchers, educators, foresters, monitoring specialists, planners, and...

Long-term variation in the winter resident bird community of Guanica Forest, Puerto Rico: lessons for measuring and monitoring species richness.

Treesearch

John Faaborg; Katie M. Dugger; Wayne J. Arendt

2007-01-01

Because the winter season is potentially limiting for migratory birds, understanding their nonbreeding distributional patterns is essential. At a given site, patterns of species occurrence and abundance may vary over time and, within a species, wintering strategies may vary with regard to the degree that individuals are site-faithful both within and between winters. We...

Compilation of 1990 annual reports of the Navy ELF communications system ecological monitoring program. Volume 3: Tabs G thru I

NASA Astrophysics Data System (ADS)

Zapotosky, J. E.

1991-08-01

This portion of the report includes monitoring of and data for bird species and communities, aquatic ecosystem and a listing of technical reports. Effects of extremely-low-frequency electromagnetic fields on most aspects of a bird species' life history are poorly understood. This investigation was designed to isolate effects of EM fields produced by ELF antenna systems on bird species breeding in or migrating through Wisconsin and Michigan. Specifically, we seek to determine if bird species richness and abundance differ between areas that are close to the antenna and those that are far enough away to be unaffected by the antenna. The goal of the aquatic ecosystems portion of the project is to determine the effects of low-level, long-term, electromagnetic radiation on the biota of streams. This electromagnetic radiation will be derived from the U.S. Navy's extremely low frequency submarine communication system (ELF) located in the upper peninsula of Michigan. The specific ecosystem being studied is the Ford River, a fourth order stream that arises in northern Dickinson and southern Marquette Counties and enters the Michigan portion of Green Bay south of Escanaba, Michigan. Detailed ecological sample and analyses are being conducted simutaneously at two sites.

The use of mist nets as a tool for bird population monitoring

Treesearch

E.H. Dunn; C. John Ralph

2004-01-01

Mist nets are an important tool for population monitoring, here defi ned as assessment of species composition, relative abundance, population size, and demography. We review the strengths and limitations of mist netting for monitoring purposes, based on papers in this volume and other literature. Advantages of using mist nets over aural or visual count methods include...

Looking beyond rare species as umbrella species: Northern Bobwhites (Colinus virginianus) and conservation of grassland and shrubland birds

USGS Publications Warehouse

Crosby, Andrew D.; Elmore, R.D.; Leslie,, David M.; Will, Rodney E.

2015-01-01

Changes in land use and land cover throughout the eastern half of North America have caused substantial declines in populations of birds that rely on grassland and shrubland vegetation types, including socially and economically important game birds such as the Northern Bobwhite (Colinus virginianus; hereafter bobwhites). As much attention is focused on habitat management and restoration for bobwhites, they may act as an umbrella species for other bird species with similar habitat requirements. We quantified the relationship of bobwhites to the overall bird community and evaluated the potential for bobwhites to act as an umbrella species for grassland and shrubland birds. We monitored bobwhite presence and bird community composition within 31 sample units on selected private lands in the south-central United States from 2009 to 2011. Bobwhites were strongly associated with other grassland and shrubland birds and were a significant positive predictor for 9 species. Seven of these, including Bell's Vireo (Vireo bell), Dicksissel (Spiza americana), and Grasshopper Sparrow (Ammodramus savannarum), are listed as species of conservation concern. Species richness and occupancy probability of grassland and shrubland birds were higher relative to the overall bird community in sample units occupied by bobwhites. Our results show that bobwhites can act as an umbrella species for grassland and shrubland birds, although the specific species in any given situation will depend on region and management objectives. These results suggest that efficiency in conservation funding can be increased by using public interest in popular game species to leverage resources to meet multiple conservation objectives.

Early avian research at the Savannah River Site, South Carolina: historical highlights and possibilities for the future

USGS Publications Warehouse

Meyers, J.M.; Odum, E.P.; Dunning, John B.=; Kilgo, John C.

2000-01-01

Avian biology and collection of baseline population data was a major part of the first decade (1951-1961) of field research at the Savannah River Site (SRS). Baseline inventories involving organisms and land-use types were part of the mission in the early contracts between the Atomic Energy Commission (now the Department of Energy) and the University of Georgia prior to the establishment of the Savannah River Ecology Laboratory (SREL) as a National Environmental Research Park Laboratory. About 27% of the SREL publications during this first decade dealt with birds. Since that time, research on the SRS landscape has expanded and broadened with less than 10% of the publications dealing with birds. SRS changed also from an agriculturally dominated area with ca. 40% open areas (fields, crops, pastures) to a timber-managed area with ca. 80% forests, 12% open areas, and 2% open water impoundments. Baseline breeding bird populations of the SRS in the 1950s were typical for the region with avian species richness and density increasing with the age and succession of the vegetation (0-26 species and densities of 0-741 pairs/km2 for the habitats surveyed). During the first decade at the SRS, the resident game bird population of Northern Bobwhites (Colinus virginianus) increased and the Mourning Dove (Zenaida rnacroura) population, a migratory upland game bird, remained stable. Current avian research efforts, as well as new opportunities to reexamine the breeding bird populations and the landscape of SRS, will provide a better understanding of the potential causes of declines of neotropical migratory birds, declines of resident and migratory game birds, and how habitat influences invasions and extinctions of breeding birds in the region. Emphasis for future research and monitoring should be on neotropical migratory bird populations in decline (Yellow-billed Cuckoo, Coccyzus americanus; Eastern Wood-Pewee, Contopus virens; Wood Thrush, Hylocichla mustelina; Prairie Warbler, Dendroica discolor; and Painted Bunting, Passerina ciris), resident species in decline (e.g., Loggerhead Shrike, Lanius ludovicianus), certain species groups (e.g., waterfowl and wading birds), important habitat, and recent invasions and extinctions of breeding species. Old growth forested wetlands should be monitored because of the large number of neotropical migratory birds that depend on this habitat in the southeastern United States. A variety of survey techniques will be needed to determine population trends: line transects, call or song playbacks, roadside point surveys (call counts for game birds), aerial surveys, and presence or absence of species within stratified areas of SRS. The SRS provides opportunity for avian research at the landscape level with the potential to solve problems important to the survival of many bird populations as well as to increase our knowledge on how to manage and conserve our avian natural resources for the future.

Standardized quality-assessment system to evaluate pressure ulcer care in the nursing home.

PubMed

Bates-Jensen, Barbara M; Cadogan, Mary; Jorge, Jennifer; Schnelle, John F

2003-09-01

To demonstrate reliability and feasibility of a standardized protocol to assess and score quality indicators relevant to pressure ulcer (PU) care processes in nursing homes (NHs). Descriptive. Eight NHs. One hundred ninety-one NH residents for whom the PU Resident Assessment Protocol of the Minimum Data Set was initiated. Nine quality indicators (two related to screening and prevention of PU, two focused on assessment, and five addressing management) were scored using medical record data, direct human observation, and wireless thigh monitor observation data. Feasibility and reliability of medical record, observation, and thigh monitor protocols were determined. The percentage of participants who passed each of the indicators, indicating care consistent with practice guidelines, ranged from 0% to 98% across all indicators. In general, participants in NHs passed fewer indicators and had more problems with medical record accuracy before a PU was detected (screening/prevention indicators) than they did once an ulcer was documented (assessment and management indicators). Reliability of the medical record protocol showed kappa statistics ranging from 0.689 to 1.00 and percentage agreement from 80% to 100%. Direct observation protocols yielded kappa statistics of 0.979 and 0.928. Thigh monitor protocols showed kappa statistics ranging from 0.609 to 0.842. Training was variable, with the observation protocol requiring 1 to 2 hours, medical records requiring joint review of 20 charts with average time to complete the review of 20 minutes, and the thigh monitor data requiring 1 week for training in data preparation and interpretation. The standardized quality assessment system generated scores for nine PU quality indicators with good reliability and provided explicit scoring rules that permit reproducible conclusions about PU care. The focus of the indicators on care processes that are under the control of NH staff made the protocol useful for external survey and internal quality improvement purposes, and the thigh monitor observational technology provided a method for monitoring repositioning care processes that were otherwise difficult to monitor and manage.

Avian Influenza Virus Surveillance in South-Central Spain Using Fecal Samples of Aquatic Birds Foraging at Landfills

PubMed Central

Bárbara, Andreia; Torrontegi, Olalla; Camacho, Maria-Cruz; Barral, Marta; Hernández, Jose-Manuel; Höfle, Ursula

2017-01-01

Aquatic wild birds have been intensively studied to better understand their role in avian influenza virus (AIV) maintenance and spread. To date, AIV surveillance has primarily focused on natural aquatic environments where different bird species aggregate and viral survival is enhanced. However, artificial habitats such as landfills are attracting substantial numbers of wild birds, AIV reservoir species included. The use of landfills as a predictable food source has significantly influenced population size, migratory traits, and feeding behavior of white storks (Ciconia ciconia) and black-headed gulls (Chroicocephalus ridibundus) among others. Considering the proximity of landfills to urban settlements and frequently poultry-farms, targeted monitoring of AIV in bird species that forage at landfills but are known to also frequent urban and agricultural habitats could be a useful means for monitoring of AIV, especially during periods of bird aggregation. During the wintering season 2014–2015, the prevalence of AIV in five avian species at two landfills in South-Central Spain was explored by rRT-PCR and species related temporal variation in AIV prevalence determined. We collected and tested 1,186 fresh fecal samples from white storks (N = 689), cattle egrets (Bubulcus ibis, N = 116) and mixed flocks of gulls (N = 381) as well as cloacal and oral swabs from five birds found dead. Seven samples contained AIV, five from gulls and one each from a stork and a cattle egret. Overall, AIV prevalence was 0.60%. No significant temporal variation was observed in AIV prevalence. Prevalence differed significantly among the sampled taxonomic groups, being highest in gulls (1.31%). H16N3 subtype was detected from a cattle egret and H11N9 subtype from a white stork, whereas gulls harbored both subtypes in addition to H11N3 subtype. H16 subtype detection in a cattle egret evidences its host range may not be restricted to gulls. Our results indicate that wild birds foraging at landfills may carry different LPAIV subtypes. PMID:29124060

Correlating Flight Behavior and Radar Measurements for Species Based Classification of Bird Radar Echoes for Wind Energy Site Assessment

NASA Astrophysics Data System (ADS)

Werth, S. P.; Frasier, S. J.

2015-12-01

Wind energy is one of the fastest-growing segments of the world energy market, offering a clean and abundant source of electricity. However, wind energy facilities can have detrimental effects on wildlife, especially birds and bats. Monitoring systems based on marine navigation radar are often used to quantify migration near potential wind sites, but the ability to reliably distinguish between bats and different varieties of birds has not been practically achieved. This classification capability would enable wind site selection that protects more vulnerable species, such as bats and raptors. Flight behavior, such as wing beat frequency, changes in speed, or changes in orientation, are known to vary by species [1]. The ability to extract these properties from radar data could ultimately enable a species based classification scheme. In this work, we analyze the relationship between radar measurements and bird flight behavior in echoes from avifauna. During the 2014 fall migration season, the UMass dual polarized weather radar was used to collect low elevation observations of migrating birds as they traversed through a fixed antenna beam. The radar was run during the night time, in clear-air conditions. Data was coherently integrated, and detections of biological targets exceeding an SNR threshold were extracted. Detections without some dominant frequency content (i.e. clear periodicity, potentially the wing beat frequency) were removed from the sample in order to isolate observations suspected to contain a single species or bird. For the remaining detections, measurements including the polarimetric products and the Doppler spectrum were extracted at each time step over the duration of the observation. The periodic and time changing nature of some of these different measurements was found to have a strong correlation with flight behavior (i.e. flapping vs. gliding behavior). Assumptions about flight behavior and orientation were corroborated through scattering simulations of birds in flight. The presence of a strong correlation between certain radar measurements and flight behavior would suggest the potential for a broad, species based avian classification algorithm. Such a classification scheme could ultimately help select and monitor wind sites in order to minimize harm to at-risk bird and bat species.

Population trends for North American winter birds based on hierarchical models

USGS Publications Warehouse

Soykan, Candan U.; Sauer, John; Schuetz, Justin G.; LeBaron, Geoffrey S.; Dale, Kathy; Langham, Gary M.

2016-01-01

Managing widespread and persistent threats to birds requires knowledge of population dynamics at large spatial and temporal scales. For over 100 yrs, the Audubon Christmas Bird Count (CBC) has enlisted volunteers in bird monitoring efforts that span the Americas, especially southern Canada and the United States. We employed a Bayesian hierarchical model to control for variation in survey effort among CBC circles and, using CBC data from 1966 to 2013, generated early-winter population trend estimates for 551 species of birds. Selecting a subset of species that do not frequent bird feeders and have ≥25% range overlap with the distribution of CBC circles (228 species) we further estimated aggregate (i.e., across species) trends for the entire study region and at the level of states/provinces, Bird Conservation Regions, and Landscape Conservation Cooperatives. Moreover, we examined the relationship between ten biological traits—range size, population size, migratory strategy, habitat affiliation, body size, diet, number of eggs per clutch, age at sexual maturity, lifespan, and tolerance of urban/suburban settings—and CBC trend estimates. Our results indicate that 68% of the 551 species had increasing trends within the study area over the interval 1966–2013. When trends were examined across the subset of 228 species, the median population trend for the group was 0.9% per year at the continental level. At the regional level, aggregate trends were positive in all but a few areas. Negative population trends were evident in lower latitudes, whereas the largest increases were at higher latitudes, a pattern consistent with range shifts due to climate change. Nine of 10 biological traits were significantly associated with median population trend; however, none of the traits explained >34% of the deviance in the data, reflecting the indirect relationships between population trend estimates and species traits. Trend estimates based on the CBC are broadly congruent with estimates based on the North American Breeding Bird Survey, another large-scale monitoring program. Both of these efforts, conducted by citizen scientists, will be required going forward to ensure robust inference about population dynamics in the face of climate and land cover changes.

Biological monitors of pollution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Root, M.

1990-02-01

This article discusses the use of biological monitors to assess the biological consequences of toxicants in the environment, such as bioavailability, synergism, and bioaccumulation through the food web. Among the organisms discussed are fly larvae, worms, bees, shellfish, fishes, birds (starlings, owls, hawks, songbirds) and mammals (rabbits, field mice, shrews).

Medication for Behavior Modification in Birds.

PubMed

van Zeeland, Yvonne

2018-01-01

The use of behavior modifying drugs may be considered in birds with behavior problems, especially those refractory to behavior modification therapy and environmental management. To accomplish behavior change, a variety of drugs can be used, including psychoactive drugs, hormones, antihistamines, analgesics, and anticonvulsants. Because their prescription to birds is off-label, these drugs are considered appropriate only when a sound rationale can be provided for their use. This requires a (correct) behavioral diagnosis to be established. In addition, regular monitoring and follow-up are warranted to determine the efficacy of the treatment and evaluate the occurrence of potential adverse side effects. Copyright © 2017 Elsevier Inc. All rights reserved.

Pilot study of long-term anaesthesia in broiler chickens.

PubMed

O'Kane, Peter M; Connerton, Ian F; White, Kate L

2016-01-01

To provide stable anaesthesia of long duration in broiler chickens in order to perform a terminal caecal ligated loop procedure. Prospective experimental study. Seven clinically healthy broiler chickens (Gallus domesticus) aged 27-36 days, weighing 884-2000 g. Anaesthesia was induced and maintained with isoflurane in oxygen. All birds underwent intermittent positive pressure ventilation for the duration. End-tidal carbon dioxide, peripheral haemoglobin oxygen saturation, heart rate and oesophageal temperature were monitored continuously. All birds received intraosseous fluids. Butorphanol (2 mg kg(-1)) was administered intramuscularly at two hourly intervals. Euthanasia by parenteral pentobarbitone was performed at the end of procedure. Stable anaesthesia was maintained in four chickens for durations ranging from 435 to 510 minutes. One bird died and one was euthanized after 130 and 330 minutes, respectively, owing to surgical complications and another died from anaesthetic complication after 285 minutes. Long-term, stable anaesthesia is possible in clinically healthy chickens, provided complications such as hypothermia and hypoventilation are addressed and vital signs are carefully monitored. There are no known previous reports describing monitored, controlled anaesthesia of this duration in chickens. © 2015 The Authors Veterinary Anaesthesia and Analgesia published by John Wiley & Sons Ltd on behalf of Association of Veterinary Anaesthetists and the American College of Veterinary Anesthesia and Analgesia.

Application of models to conservation planning for terrestrial birds in North America

USGS Publications Warehouse

Fitzgerald, Jane A.; Thogmartin, Wayne E.; Dettmers, Randy; Jones, Tim; Rustay, Christopher; Ruth, Janet M.; Thompson, Frank R.; Will, Tom; Millspaugh, Joshua J.; Thompson, Frank R.

2009-01-01

Partners in Flight (PIF), a public–private coalition for the conservation of land birds, has developed one of four international bird conservation plans recognized under the auspices of the North American Bird Conservation Initiative (NABCI). Partners in Flight prioritized species most in need of conservation attention and set range-wide population goals for 448 species of terrestrial birds. Partnerships are now tasked with developing spatially explicit estimates of the distribution, and abundance of priority species across large ecoregions and identifying habitat acreages needed to support populations at prescribed levels. The PIF Five Elements process of conservation design identifies five steps needed to implement all bird conservation at the ecoregional scale. Habitat assessment and landscape characterization describe the current amounts of different habitat types and summarize patch characteristics, and landscape configurations that define the ability of a landscape to sustain healthy bird populations and are a valuable first step to describing the planning area before pursuing more complex species-specific models. Spatially linked database models, landscape-scale habitat suitability models, and statistical models are viable alternatives for predicting habitat suitability or bird abundance across large planning areas to help assess conservation opportunities, design landscapes to meet population objectives, and monitor change in habitat suitability or bird numbers over time.Bird conservation in the United States is a good example of the use of models in large-scale wildlife conservation planning because of its geographic extent, focus on multiple species, involvement of multiple partners, and use of simple to complex models. We provide some background on the recent development of bird conservation initiatives in the United States and the approaches used for regional conservation assessment and planning. We focus on approaches being used for landscape characterization and assessment, and bird population response modeling.

Status and trends monitoring of riparian and aquatic habitat in the Olympic Experimental State Forest: Monitoring protocols

Treesearch

Teodora Minkova; Alex D. Foster

2017-01-01

Presented here are the monitoring protocols for the Status and Trends Monitoring of Riparian and Aquatic Habitats project in the Olympic Experimental State Forest (OESF). The procedures yield the empirical data needed to address key uncertainties regarding the integration of timber production and habitat conservation across landscapes and assess progress toward...

Statistical approaches to the analysis of point count data: A little extra information can go a long way

USGS Publications Warehouse

Farnsworth, G.L.; Nichols, J.D.; Sauer, J.R.; Fancy, S.G.; Pollock, K.H.; Shriner, S.A.; Simons, T.R.; Ralph, C. John; Rich, Terrell D.

2005-01-01

Point counts are a standard sampling procedure for many bird species, but lingering concerns still exist about the quality of information produced from the method. It is well known that variation in observer ability and environmental conditions can influence the detection probability of birds in point counts, but many biologists have been reluctant to abandon point counts in favor of more intensive approaches to counting. However, over the past few years a variety of statistical and methodological developments have begun to provide practical ways of overcoming some of the problems with point counts. We describe some of these approaches, and show how they can be integrated into standard point count protocols to greatly enhance the quality of the information. Several tools now exist for estimation of detection probability of birds during counts, including distance sampling, double observer methods, time-depletion (removal) methods, and hybrid methods that combine these approaches. Many counts are conducted in habitats that make auditory detection of birds much more likely than visual detection. As a framework for understanding detection probability during such counts, we propose separating two components of the probability a bird is detected during a count into (1) the probability a bird vocalizes during the count and (2) the probability this vocalization is detected by an observer. In addition, we propose that some measure of the area sampled during a count is necessary for valid inferences about bird populations. This can be done by employing fixed-radius counts or more sophisticated distance-sampling models. We recommend any studies employing point counts be designed to estimate detection probability and to include a measure of the area sampled.

Exploiting Science: Enhancing the Safety Training of Pilots to Reduce the Risk of Bird Strikes

NASA Astrophysics Data System (ADS)

Mendonca, Flavio A. C.

Analysis of bird strikes to aviation in the U.S. from 1990 to 2015 indicate that the successful mitigation efforts at airports, which must be sustained, have reduced incidents with damage and a negative effect-on-flight since 2000. However, such efforts have done little to reduce strikes outside the airport jurisdiction, such as occurred with US Airways Flight 1549 in 2009. There are basically three strategies to mitigate the risk of bird strikes: standards set by aviation authorities, technology, and actions by crewmembers. Pilots play an important role as stakeholders in the prevention of bird strikes, especially outside the airport environment. Thus, safety efforts require enhanced risk management and aeronautical decision-making training for flight crews. The purpose of this study was to determine if a safety training protocol could effectively enhance CFR Part 141 general aviation pilots' knowledge and skills to reduce the risk of bird strikes to aviation. Participants were recruited from the Purdue University professional flight program and from Purdue Aviation. The researcher of this study used a pretest posttest experimental design. Additionally, qualitative data were collected through open-ended questions in the pretest, posttest, and a follow-up survey questionnaire. The participants' pretest and posttest scores were analyzed using parametric and nonparametric tests. Results indicated a significant increase in the posttest scores of the experimental group. An investigation of qualitative data showed that the topic "safety management of bird hazards by pilots" is barely covered during the ground and flight training of pilots. Furthermore, qualitative data suggest a misperception of the safety culture tenets and a poor familiarity with the safety risk management process regarding bird hazards. Finally, the researcher presented recommendations for practice and future research.

A Method of Managing Severe Traumatic Brain Injury in the Absence of Intracranial Pressure Monitoring: The Imaging and Clinical Examination Protocol.

PubMed

Chesnut, Randall M; Temkin, Nancy; Dikmen, Sureyya; Rondina, Carlos; Videtta, Walter; Petroni, Gustavo; Lujan, Silvia; Alanis, Victor; Falcao, Antonio; de la Fuenta, Gustavo; Gonzalez, Luis; Jibaja, Manuel; Lavarden, Arturo; Sandi, Freddy; Mérida, Roberto; Romero, Ricardo; Pridgeon, Jim; Barber, Jason; Machamer, Joan; Chaddock, Kelley

2018-01-01

The imaging and clinical examination (ICE) algorithm used in the Benchmark Evidence from South American Trials: Treatment of Intracranial Pressure (BEST TRIP) randomized controlled trial is the only prospectively investigated clinical protocol for traumatic brain injury management without intracranial pressure (ICP) monitoring. As the default literature standard, it warrants careful evaluation. We present the ICE protocol in detail and analyze the demographics, outcome, treatment intensity, frequency of intervention usage, and related adverse events in the ICE-protocol cohort. The 167 ICE protocol patients were young (median 29 years) with a median Glasgow Coma Scale motor score of 4 but with anisocoria or abnormal pupillary reactivity in 40%. This protocol produced outcomes not significantly different from those randomized to the monitor-based protocol (favorable 6-month extended Glasgow Outcome Score in 39%; 41% mortality rate). Agents commonly employed to treat suspected intracranial hypertension included low-/moderate-dose hypertonic saline (72%) and mannitol (57%), mild hyperventilation (adjusted partial pressure of carbon dioxide 30-35 mm Hg in 73%), and pressors to maintain cerebral perfusion (62%). High-dose hyperosmotics or barbiturates were uncommonly used. Adverse event incidence was low and comparable to the BEST TRIP monitored group. Although this protocol should produce similar/acceptable results under circumstances comparable to those in the trial, influences such as longer pre-hospital times and non-specialist transport personnel, plus an intensive care unit model of aggressive physician-intensive care by small groups of neurotrauma-focused intensivists, which differs from most high-resource models, support caution in expecting the same results in dissimilar settings. Finally, this protocol's ICP-titration approach to suspected intracranial hypertension (vs. crisis management for monitored ICP) warrants further study.

Methods for Monitoring Fish Communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Plateaus of Arkansas and Missouri: Version 1.0

USGS Publications Warehouse

Petersen, James C.; Justus, B.G.; Dodd, H.R.; Bowles, D.E.; Morrison, L.W.; Williams, M.H.; Rowell, G.A.

2008-01-01

Buffalo National River located in north-central Arkansas, and Ozark National Scenic Riverways, located in southeastern Missouri, are the two largest units of the National Park Service in the Ozark Plateaus physiographic province. The purpose of this report is to provide a protocol that will be used by the National Park Service to sample fish communities and collect related water-quality, habitat, and stream discharge data of Buffalo National River and Ozark National Scenic Riverways to meet inventory and long-term monitoring objectives. The protocol includes (1) a protocol narrative, (2) several standard operating procedures, and (3) supplemental information helpful for implementation of the protocol. The protocol narrative provides background information about the protocol such as the rationale of why a particular resource or resource issue was selected for monitoring, information concerning the resource or resource issue of interest, a description of how monitoring results will inform management decisions, and a discussion of the linkages between this and other monitoring projects. The standard operating procedures cover preparation, training, reach selection, water-quality sampling, fish community sampling, physical habitat collection, measuring stream discharge, equipment maintenance and storage, data management and analysis, reporting, and protocol revision procedures. Much of the information in the standard operating procedures was gathered from existing protocols of the U.S. Geological Survey National Water Quality Assessment program or other sources. Supplemental information that would be helpful for implementing the protocol is included. This information includes information on fish species known or suspected to occur in the parks, sample sites, sample design, fish species traits, index of biotic integrity metrics, sampling equipment, and field forms.

Monitoring fish distributions along electrofishing segments

USGS Publications Warehouse

Miranda, Leandro E.

2014-01-01

Electrofishing is widely used to monitor fish species composition and relative abundance in streams and lakes. According to standard protocols, multiple segments are selected in a body of water to monitor population relative abundance as the ratio of total catch to total sampling effort. The standard protocol provides an assessment of fish distribution at a macrohabitat scale among segments, but not within segments. An ancillary protocol was developed for assessing fish distribution at a finer scale within electrofishing segments. The ancillary protocol was used to estimate spacing, dispersion, and association of two species along shore segments in two local reservoirs. The added information provided by the ancillary protocol may be useful for assessing fish distribution relative to fish of the same species, to fish of different species, and to environmental or habitat characteristics.

Bird community composition

USGS Publications Warehouse

Antrobus, T.J.; Guilfoyle, M.P.; Barrow, W.C.; Hamel, P.B.; Wakeley, J.S.

2000-01-01

Neotropical migrants are birds that breed in North America and winter primarily in Central and South America. Long-term population studies of birds in the Eastern United States indicated declines of some forest-dwelling birds, many of which winter in the Neotropics (Peterjohn and others 1995). These declines were attributed to loss of wintering and breeding habitat due to deforestation and fragmentation, respectively. Many species of Nearctic migrants--birds that breed in the northern regions of North America and winter in the Southern United States--are also experiencing population declines. Because large areas of undistrubed, older, bottomland hardwood forests oftern contain large numbers of habitat specialists, including forest-interior neotropical migrants and wintering Nearctic migrants, these forests may be critical in maintaining avian diversity. This study had two primary objectivs: (1) to create a baseline data set that can be used as a standard against which other bottomland hardwood forests can be compared, and (2) to establish long-term monitoring stations during both breeding and wintering seasons to discern population trends of avian species using bottomland hardwood forests.

Lead and cadmium in wild birds in southeastern Spain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia-Fernandez, A.J.; Sanchez-Garcia, J.A.; Luna, A.

1995-12-01

The main purpose of this study was to monitor exposure to lead and cadmium in wild birds in Murcia, a southeastern region of Spain on the Mediterranean coast. This region lies on one of the African-European flyways. Samples of liver, kidney, brain, bone, and whole blood from several species of wild birds were obtained during 1993. The authors found a clear relationship between cadmium and lead concentrations in birds and their feedings habits. Vultures (Gyps fulvus) had the highest concentrations of lead (mean 40 {micro}g/dl in blood), and seagulls (Larus argentatus and Larus ridibundus) the highest concentrations of cadmium (meanmore » 4.43 {micro}g/g in kidney). Insectivores had high concentrations of both metals, and diurnal and nocturnal raptors showed the lowest tissue concentrations. The findings that tissue and blood concentrations were generally not elevated suggests environmental (rather than acute) exposure. Birds from more industrialized areas of the region studied here had higher concentrations of both lead and cadmium.« less

Webcams for Bird Detection and Monitoring: A Demonstration Study

PubMed Central

Verstraeten, Willem W.; Vermeulen, Bart; Stuckens, Jan; Lhermitte, Stefaan; Van der Zande, Dimitry; Van Ranst, Marc; Coppin, Pol

2010-01-01

Better insights into bird migration can be a tool for assessing the spread of avian borne infections or ecological/climatologic issues reflected in deviating migration patterns. This paper evaluates whether low budget permanent cameras such as webcams can offer a valuable contribution to the reporting of migratory birds. An experimental design was set up to study the detection capability using objects of different size, color and velocity. The results of the experiment revealed the minimum size, maximum velocity and contrast of the objects required for detection by a standard webcam. Furthermore, a modular processing scheme was proposed to track and follow migratory birds in webcam recordings. Techniques such as motion detection by background subtraction, stereo vision and lens distortion were combined to form the foundation of the bird tracking algorithm. Additional research to integrate webcam networks, however, is needed and future research should enforce the potential of the processing scheme by exploring and testing alternatives of each individual module or processing step. PMID:22319308

Role of Terrestrial Wild Birds in Ecology of Influenza A Virus (H5N1)

PubMed Central

Boon, Adrianus C.M.; Sandbulte, Matthew R.; Seiler, Patrick; Webby, Richard J.; Songserm, Thaweesak; Guan, Yi

2007-01-01

House sparrows, European starlings, and Carneux pigeons were inoculated with 4 influenza A (H5N1) viruses isolated from different avian species. We monitored viral replication, death after infection, and transmission to uninfected contact birds of the same species. Sparrows were susceptible to severe infection; 66%–100% of birds died within 4–7 days. High levels of virus were detected from oropharyngeal and cloacal swabs and in organs of deceased sparrows. Inoculation of starlings caused no deaths, despite high levels of virus shedding evident in oropharyngeal swabs. Least susceptible were pigeons, which had no deaths and very low levels of virus in oropharyngeal and cloacal swabs. Transmission to contact birds did not occur frequently: only A/common magpie/Hong Kong/645/2006 virus was shown to transmit to 1 starling. In summary, recent influenza (H5N1) viruses are pathogenic for small terrestrial bird species but the rate of intraspecies transmission in these hosts is very low. PMID:18217557

Webcams for bird detection and monitoring: a demonstration study.

PubMed

Verstraeten, Willem W; Vermeulen, Bart; Stuckens, Jan; Lhermitte, Stefaan; Van der Zande, Dimitry; Van Ranst, Marc; Coppin, Pol

2010-01-01

Better insights into bird migration can be a tool for assessing the spread of avian borne infections or ecological/climatologic issues reflected in deviating migration patterns. This paper evaluates whether low budget permanent cameras such as webcams can offer a valuable contribution to the reporting of migratory birds. An experimental design was set up to study the detection capability using objects of different size, color and velocity. The results of the experiment revealed the minimum size, maximum velocity and contrast of the objects required for detection by a standard webcam. Furthermore, a modular processing scheme was proposed to track and follow migratory birds in webcam recordings. Techniques such as motion detection by background subtraction, stereo vision and lens distortion were combined to form the foundation of the bird tracking algorithm. Additional research to integrate webcam networks, however, is needed and future research should enforce the potential of the processing scheme by exploring and testing alternatives of each individual module or processing step.

Use of Propofol for Induction and Maintenance of Anesthesia in a King Penguin ( Aptenodytes patagonicus ) Undergoing Magnetic Resonance Imaging.

PubMed

Bigby, Sarah E; Carter, Jennifer E; Bauquier, Sébastien; Beths, Thierry

2016-09-01

Anesthesia protocols for patients with intracranial lesions need to provide hemodynamic stability, preserve cerebrovascular autoregulation, avoid increases in intracranial pressure, and facilitate a rapid recovery. Propofol total intravenous anesthesia (TIVA) maintains cerebral blood flow autoregulation and is considered superior to inhalant agents as an anesthetic protocol for patients with intracranial lesions. A propofol-based TIVA subsequent to premedication with medetomidine and diazepam was used in a king penguin ( Aptenodytes patagonicus ) undergoing magnetic resonance imaging of the brain after a new onset of seizures. This protocol provided a rapid and smooth induction and calm recovery in the penguin. When ventilation control is possible, propofol TIVA may be a superior choice to inhalant agents for anesthesia of birds with potential intracranial lesions.

KSC-06pd1339

NASA Image and Video Library

2006-06-27

KENNEDY SPACE CENTER, FLA. - This radar image shows the presence of large birds around Launch Pad 39B. The data is being relayed from the avian radars recently set up on the pad. The computer is one of two set up in Firing Room 4 of the Launch Control Center. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/George Shelton

A retrospective perspective: evaluating population changes by repeating historic bird surveys

USGS Publications Warehouse

Igl, Lawrence D.; Johnson, Douglas H.

2005-01-01

Acquiring an accurate picture of the changes in bird populations often involves a tradeoff between the time and effort required to complete the surveys and the number of years spent surveying the bird populations. An alternative approach to long-term monitoring efforts is to collect current data and contrast those with data collected earlier in a similar fashion on the same study site(s). To evaluate changes in bird populations, we repeated two extensive surveys, one in North Dakota (1967 vs. 1992-1993) and the other in the Platte River Valley of Nebraska (1979-1980 vs. 2001), where large areas of native vegetation had been converted to agriculture. We use these examples and others from the literature to illustrate the advantages and disadvantages of using historical data as a frame of reference for population changes.

EMAP and other tools for measuring biodiversity, habitat conditions, and environmental trends

Treesearch

Eric M. Preston; Christine A. Ribic

1993-01-01

We describe research efforts that contribute to assessment and monitoring of neotropical migratory birds, including: I) use of neotropical migrants in the Environmental Monitoring and Assessment Program (EMAP) as potential indicators of general environmental condition and biodiversity; 2) EPA's Habitat/Biodiversity Research Initiative to assess comparative risks...

Factors affecting the toxicity of methylmercury injected into eggs

USGS Publications Warehouse

Heinz, G.H.; Hoffman, D.J.; Kondrad, S.L.; Erwin, C.A.

2006-01-01

We developed a standardized protocol for comparing the sensitivities of the embryos of different bird species to methylmercury when methylmercury was injected into their eggs. During the course of developing this protocol, we investigated the effects of various factors on the toxicity of the injected methylmercury. Most of our experiments were done with chicken (Gallus domesticus), mallard (Anas platyrhynchos), and ring-necked pheasant (Phasianus colchicus) eggs, all of which were purchased in large numbers from game farms. A smaller amount of work was done with double-crested cormorant (Phalacrocorax auritus) eggs collected from the wild. Several solvents were tested, and corn oil at a rate of 1 ??l/g egg contents was selected for the final standardized protocol because it had minimal toxicity to embryos and because methylmercury dissolved in corn oil yielded a dose-response curve in a range of egg concentrations that was similar to the range that causes reproductive impairment when the mother deposits methylmercury into her own eggs. The embryonic stage at which eggs were injected with corn oil altered mercury toxicity; at early stages, the corn oil itself was toxic. Therefore, in the final protocol we standardized the time of injection to occur when each species reached the morphologic equivalent of a 3-day-old chicken embryo. Although solvents can be injected directly into the albumen of an egg, high embryo mortality can occur in the solvent controls because of the formation of air bubbles in the albumen. Our final protocol used corn oil injections into the air cell, which are easier and safer than albumen injections. Most of the methylmercury, when dissolved in corn oil, injected into the air cell passes through the inner shell membrane and into the egg albumen. Most commercial incubators incubate eggs in trays with the air cell end of the egg pointing upward, but we discovered that mercury-induced mortality was too great when eggs were held in this orientation. In addition, some species of bird eggs require incubation on their sides with the eggs being rolled 180?? for them to develop normally. Therefore, we adopted a procedure of incubating the eggs of all species on their sides and rolling them 180?? every hour. Little has been published about the conditions of temperature, humidity, and the movements to which eggs of wild birds need to be subjected for them to hatch optimally under artificial incubation. Not unexpectedly, hatching success in an artificial incubator is generally less than what natural incubation by the parents can achieve. However, the survival of control embryos of most wild bird species was good (generally ??? 80%) up to within 1 or 2 days of hatching when we incubated the eggs at 37.5??C (or 37.6??C for gallinaceous species) at a relative humidity that resulted in an approximate 15% to 16% loss in egg weight by the end of incubation and by incubating the eggs on their sides and rolling them 180??/h. To improve statistical comparisons, we used survival through 90% of incubation as our measurement to compare survival of controls with survival of eggs injected with graded concentrations of mercury. ?? 2006 Springer Science+Business Media, Inc.

Factors affecting the toxicity of methylmercury injected into eggs

USGS Publications Warehouse

Heinz, G.H.; Hoffman, D.J.; Kondrad, S.L.; Erwin, C.A.

2006-01-01

We developed a standardized protocol for comparing the sensitivities of the embryos of different bird species to methylmercury when methylmercury was injected into their eggs. During the course of developing this protocol, we investigated the effects of various factors on the toxicity of the injected methylmercury. Most of our experiments were done with chicken (Gallus domesticus), mallard (Anas platyrhynchos), and ring-necked pheasant (Phasianus colchicus) eggs, all of which were purchased in large numbers from game farms. A smaller amount of work was done with double-crested cormorant (Phalacrocorax auritus) eggs collected from the wild. Several solvents were tested, and corn oil at a rate of 1 :l/g egg contents was selected for the final standardized protocol because it had minimal toxicity to embryos and because methylmercury dissolved in corn oil yielded a dose?response curve in a range of egg concentrations that was similar to the range that causes reproductive impairment when the mother deposits methylmercury into her own eggs. The embryonic stage at which eggs were injected with corn oil altered mercury toxicity; at early stages, the corn oil itself was toxic. Therefore, in the final protocol we standardized the time of injection to occur when each species reached the morphologic equivalent of a 3-day-old chicken embryo. Although solvents can be injected directly into the albumen of an egg, high embryo mortality can occur in the solvent controls because of the formation of air bubbles in the albumen. Our final protocol used corn oil injections into the air cell, which are easier and safer than albumen injections. Most of the methylmercury, when dissolved in corn oil, injected into the air cell passes through the inner shell membrane and into the egg albumen. Most commercial incubators incubate eggs in trays with the air cell end of the egg pointing upward, but we discovered that mercury-induced mortality was too great when eggs were held in this orientation. In addition, some species of bird eggs require incubation on their sides with the eggs being rolled 180? for them to develop normally. Therefore, we adopted a procedure of incubating the eggs of all species on their sides and rolling them 180? every hour. Little has been published about the conditions of temperature, humidity, and the movements to which eggs of wild birds need to be subjected for them to hatch optimally under artificial incubation. Not unexpectedly, hatching success in an artificial incubator is generally less than what natural incubation by the parents can achieve. However, the survival of control embryos of most wild bird species was good (generally > 80%) up to within 1 or 2 days of hatching when we incubated the eggs at 37.5?C (or 37.6?C for gallinaceous species) at a relative humidity that resulted in an approximate 15% to 16% loss in egg weight by the end of incubation and by incubating the eggs on their sides and rolling them 180?/h. To improve statistical comparisons, we used survival through 90% of incubation as our measurement to compare survival of controls with survival of eggs injected with graded concentrations of mercury.

Avian community composition in response to high explosive testing operations at Los Alamos National Laboratory in Northern New Mexico

DOE PAGES

Keller, David C.; Fresquez, Philip R.; Hansen, Leslie A.; ...

2015-12-28

Breeding bird abundance, species richness, evenness, diversity, composition, productivity, and survivorship were determined near a high-explosive detonation site at Los Alamos National Laboratory, New Mexico, USA, during pre-operation (1997-1999) and operation (2000-2014) periods. The operation periods consisted of detonations (<23 kg in yield and <3 per breeding season) in open air (2000-2002), within foam containment (2003-2006) and within steel vessel containment (2007-2014) systems; the latter two were employed to reduce noise and dispersal of high-explosives residues. A total of 2952 bird captures, representing 80 species, was recorded during 18 years of mist net operations using the Monitoring Avian Productivity andmore » Survivorship protocol. Individuals captured were identified to species, aged, sexed, and banded during May through August of each year. There were no significant differences (p > 0.05) in mean avian abundance and species evenness in any of the operation periods as compared with the pre-operation period. Species richness and diversity were significantly higher (p < 0.05) during the vessel containment period (2007-2014) than the pre-operation period. The time period of this study coincided with a wildfire (2000), a bark beetle infestation (2002), and two periods of drought (Nov 1999-Mar 2004 and Dec 2005-Dec 2014) that affected the study area. Furthermore, analysis of aerial photos determined that the average percent canopy cover of mature ponderosa pines (Pinus ponderosa) within 100 feet of mist net sites declined from 12% to 3% between 1991 and 2014 and the percent cover of shrubs slightly increased.« less

Ophthalmic effects of petroleum dispersant exposure on common murres (Uria aalge): An experimental study.

PubMed

Fiorello, Christine V; Freeman, Kate; Elias, Becky A; Whitmer, Emily; Ziccardi, Michael H

2016-12-15

The safety of chemical dispersants used during oil spill responses is largely unknown in birds. We captured common murres in Monterey Bay, CA and exposed them to Corexit EC9500a, crude oil, or a combination in artificial seawater. We performed ophthalmic examinations and measured intraocular pressures and tear production before and after exposure. Loglinear analysis found that exposure to oil or dispersant was related to the development of conjunctivitis and corneal ulcers. Odds ratios for birds exposed to oil or dispersant were positive and significant for the development of conjunctivitis, while odds ratios for the development of corneal ulcers were positive and significant only for birds exposed to a high concentration of oil. Ocular exposure to dispersants and petroleum in seabirds may cause conjunctivitis and may play a role in the development of corneal ulcers. These results have implications for policymakers who develop protocols for the use of dispersants during marine oil spills. Copyright © 2016 Elsevier Ltd. All rights reserved.

Promoting wildness in sandhill cranes conditioned to follow an ultralight aircraft

USGS Publications Warehouse

Duff, J.W.; Lishman, W.A.; Clark, D.A.; Gee, G.F.; Sprague, D.T.; Ellis, D.H.

2001-01-01

During the 1998 field season, we developed and tested a new protocol to teach sandhill cranes (Grus canadensis) to follow ultralight aircraft yet avoid humans. Although successful in teaching the cranes a migration route, our previous migration (1997) resulted in birds that were overly tame and sought association with humans. For this study, 16 sandhill cranes were costume-reared at USGS Patuxent Wildlife Research Center and transported to Ontario shortly before fledging. After the birds learned to follow the aircraft, 14 were transported to an isolated wintering site in South Carolina, 1300 km south of the training area. Twelve arrived safely. Eleven of 12 birds survived the winter. All of these 11 cranes moved north to Cape Hatteras in early May. Thereafter, 6 of the cranes were captured and translocated to northern New York state. The remaining 5 returned to South Carolina, autumn 1999. Prior to capture, although the cranes sometimes allowed humans to approach them, none of the cranes approached buildings or humans.

Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight.

PubMed

Beaudrot, Lydia; Ahumada, Jorge A; O'Brien, Timothy; Alvarez-Loayza, Patricia; Boekee, Kelly; Campos-Arceiz, Ahimsa; Eichberg, David; Espinosa, Santiago; Fegraus, Eric; Fletcher, Christine; Gajapersad, Krisna; Hallam, Chris; Hurtado, Johanna; Jansen, Patrick A; Kumar, Amit; Larney, Eileen; Lima, Marcela Guimarães Moreira; Mahony, Colin; Martin, Emanuel H; McWilliam, Alex; Mugerwa, Badru; Ndoundou-Hockemba, Mireille; Razafimahaimodison, Jean Claude; Romero-Saltos, Hugo; Rovero, Francesco; Salvador, Julia; Santos, Fernanda; Sheil, Douglas; Spironello, Wilson R; Willig, Michael R; Winarni, Nurul L; Zvoleff, Alex; Andelman, Sandy J

2016-01-01

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world's species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropical forests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3-8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse.

Monitoring protected areas from space: A multi-temporal assessment using raptors as biodiversity surrogates

PubMed Central

Tapia, Luis; Gil-Carrera, Alberto; Domínguez, Jesús

2017-01-01

Monitoring protected areas (PAs) is essential for systematic evaluation of their effectiveness in terms of habitat protection, preservation and representativeness. This study illustrates how the use of species distribution models that combine remote sensing data and information about biodiversity surrogates can contribute to develop a systematic protocol for monitoring PAs. In particular, we assessed the effectiveness of the Natura 2000 (N2000) network, for conserving and preserving the representativeness of seven raptor species in a highly-dynamic landscape in northwest Spain between 2001 and 2014. We also evaluated the cost-effectiveness of the N2000 network by using the total area under protection as a proxy for conservation costs. Overall, the N2000 network was found to poorly represent the habitats of the raptor species. Despite the low representativeness, this network showed a high degree of effectiveness due to increased overall habitat availability for generalist and forest specialist species between 2001 and 2014. Nevertheless, additional protected areas should be established in the near future to increase their representativeness, and thus ensure the protection of open-habitat specialist species and their priority habitats. In addition, proactive conservation measures in natural and semi-natural ecosystems (in particular, montane heathlands) will be essential for long-term protection of Montagu’s harrier (species listed in the Annex I of the Bird Directive), and thus complying with the current European Environmental Legislation. This study sheds light on how the development and application of new protected area indices based on the combined use of freely-available satellite data and species distribution models may contribute substantially to the cost-efficiency of the PA monitoring systems, and to the ‘Fitness Check’ process of EU Nature Directives. PMID:28738072

Monitoring protected areas from space: A multi-temporal assessment using raptors as biodiversity surrogates.

PubMed

Regos, Adrián; Tapia, Luis; Gil-Carrera, Alberto; Domínguez, Jesús

2017-01-01

Monitoring protected areas (PAs) is essential for systematic evaluation of their effectiveness in terms of habitat protection, preservation and representativeness. This study illustrates how the use of species distribution models that combine remote sensing data and information about biodiversity surrogates can contribute to develop a systematic protocol for monitoring PAs. In particular, we assessed the effectiveness of the Natura 2000 (N2000) network, for conserving and preserving the representativeness of seven raptor species in a highly-dynamic landscape in northwest Spain between 2001 and 2014. We also evaluated the cost-effectiveness of the N2000 network by using the total area under protection as a proxy for conservation costs. Overall, the N2000 network was found to poorly represent the habitats of the raptor species. Despite the low representativeness, this network showed a high degree of effectiveness due to increased overall habitat availability for generalist and forest specialist species between 2001 and 2014. Nevertheless, additional protected areas should be established in the near future to increase their representativeness, and thus ensure the protection of open-habitat specialist species and their priority habitats. In addition, proactive conservation measures in natural and semi-natural ecosystems (in particular, montane heathlands) will be essential for long-term protection of Montagu's harrier (species listed in the Annex I of the Bird Directive), and thus complying with the current European Environmental Legislation. This study sheds light on how the development and application of new protected area indices based on the combined use of freely-available satellite data and species distribution models may contribute substantially to the cost-efficiency of the PA monitoring systems, and to the 'Fitness Check' process of EU Nature Directives.

Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight

PubMed Central

O'Brien, Timothy; Alvarez-Loayza, Patricia; Boekee, Kelly; Campos-Arceiz, Ahimsa; Eichberg, David; Espinosa, Santiago; Fegraus, Eric; Fletcher, Christine; Gajapersad, Krisna; Hallam, Chris; Hurtado, Johanna; Jansen, Patrick A.; Kumar, Amit; Larney, Eileen; Lima, Marcela Guimarães Moreira; Mahony, Colin; Martin, Emanuel H.; McWilliam, Alex; Mugerwa, Badru; Ndoundou-Hockemba, Mireille; Razafimahaimodison, Jean Claude; Romero-Saltos, Hugo; Rovero, Francesco; Salvador, Julia; Santos, Fernanda; Sheil, Douglas; Spironello, Wilson R.; Willig, Michael R.; Winarni, Nurul L.; Zvoleff, Alex; Andelman, Sandy J.

2016-01-01

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world’s species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropical forests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3–8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse. PMID:26785119

The role of citizen science in monitoring biodiversity in Ireland

NASA Astrophysics Data System (ADS)

Donnelly, Alison; Crowe, Olivia; Regan, Eugenie; Begley, Sinead; Caffarra, Amelia

2014-08-01

Citizen science is proving to be an effective tool in tracking the rapid pace at which our environment is changing over large geographic areas. It is becoming increasingly popular, in places such as North America and some European countries, to engage members of the general public and school pupils in the collection of scientific data to support long-term environmental monitoring. Participants in such schemes are generally volunteers and are referred to as citizen scientists. The Christmas bird count in the US is one of the worlds longest running citizen science projects whereby volunteers have been collecting data on birds on a specific day since 1900. Similar volunteer networks in Ireland have been in existence since the 1960s and were established to monitor the number and diversity of birds throughout the country. More recently, initiatives such as Greenwave (2006) and Nature Watch (2009) invite school children and members of the general public respectively, to record phenology data from a range of common species of plant, insect and bird. In addition, the Irish butterfly and bumblebee monitoring schemes engage volunteers to record data on sightings of these species. The primary purpose of all of these networks is to collect data by which to monitor changes in wildlife development and diversity, and in the case of Greenwave to involve children in hands-on, inquiry-based science. Together these various networks help raise awareness of key environmental issues, such as climate change and loss of biodiversity, while at the same time promote development of scientific skills among the general population. In addition, they provide valuable scientific data by which to track environmental change. Here we examine the role of citizen science in monitoring biodiversity in Ireland and conclude that some of the data collected in these networks can be used to fulfil Ireland's statutory obligations for nature conservation. In addition, a bee thought previously to be extinct has been rediscovered and a range expansion of a different bee has been confirmed. However, it also became apparent that some of the networks play more of an educational than a scientific role. Furthermore, we draw on experience from a range of citizen science projects to make recommendations on how best to establish new citizen science projects in Ireland and strengthen existing ones.

How many Laysan Teal Anas laysanensis are on Midway Atoll? Methods for monitoring abundance after reintroduction

USGS Publications Warehouse

Reynolds, Michelle H.; Courtot, Karen; Hatfield, Jeffrey

2017-01-01

Wildlife managers often request a simple approach to monitor the status of species of concern. In response to that need, we used eight years of monitoring data to estimate population size and test the validity of an index for monitoring accurately the abundance of reintroduced, endangered Laysan Teal Anas laysanensis. The population was established at Midway Atoll in the Hawaiian archipelago after 42 wild birds were translocated from Laysan Island during 2004–2005. We fitted 587 birds with unique markers during 2004–2015, recorded 21,309 sightings until March 2016, and conducted standardised survey counts during 2007–2015. A modified Lincoln-Petersen mark-resight estimator and ANCOVA models were used to test the relationship between survey counts, seasonal detectability, and population abundance. Differences were found between the breeding and non-breeding seasons in detection and how maximum counts recorded related to population estimates. The results showed strong, positive correlations between the seasonal maximum counts and population estimates. The ANCOVA models supported the use of standardised bi-monthly counts of unmarked birds as a valid index to monitor trends among years within a season at Midway Atoll. The translocated population increased to 661 adult and juvenile birds (95% CI = 608–714) by 2010, then declined by 38% between 2010 and 2012 after the Toˉhoku Japan earthquake-generated tsunami inundated 41% of the atoll and triggered an Avian Botulism type C Clostridium botulinum outbreak. Following another severe botulism outbreak during 2015, the population experienced a 37% decline. Data indicated that the Midway Atoll population, like the founding Laysan Island population, is susceptible to catastrophic population declines. Consistent standardised monitoring using simple counts, in place of mark-recapture and resightings surveys, can be used to evaluate population status over the long-term. We estimate there were 314–435 Laysan Teal (95% CI for population estimate; point estimate = 375 individuals) at Midway Atoll in 2015; c. 50% of the global population. In comparison, the most recent estimate for numbers on Laysan Island was of 339 individuals in 2012 (95% CI = 265–413). We suggest that this approach can be used to validate a survey index for any marked, reintroduced resident wildlife population.

The role of citizen science in monitoring biodiversity in Ireland.

PubMed

Donnelly, Alison; Crowe, Olivia; Regan, Eugenie; Begley, Sinead; Caffarra, Amelia

2014-08-01

Citizen science is proving to be an effective tool in tracking the rapid pace at which our environment is changing over large geographic areas. It is becoming increasingly popular, in places such as North America and some European countries, to engage members of the general public and school pupils in the collection of scientific data to support long-term environmental monitoring. Participants in such schemes are generally volunteers and are referred to as citizen scientists. The Christmas bird count in the US is one of the worlds longest running citizen science projects whereby volunteers have been collecting data on birds on a specific day since 1900. Similar volunteer networks in Ireland have been in existence since the 1960s and were established to monitor the number and diversity of birds throughout the country. More recently, initiatives such as Greenwave (2006) and Nature Watch (2009) invite school children and members of the general public respectively, to record phenology data from a range of common species of plant, insect and bird. In addition, the Irish butterfly and bumblebee monitoring schemes engage volunteers to record data on sightings of these species. The primary purpose of all of these networks is to collect data by which to monitor changes in wildlife development and diversity, and in the case of Greenwave to involve children in hands-on, inquiry-based science. Together these various networks help raise awareness of key environmental issues, such as climate change and loss of biodiversity, while at the same time promote development of scientific skills among the general population. In addition, they provide valuable scientific data by which to track environmental change. Here we examine the role of citizen science in monitoring biodiversity in Ireland and conclude that some of the data collected in these networks can be used to fulfil Ireland's statutory obligations for nature conservation. In addition, a bee thought previously to be extinct has been rediscovered and a range expansion of a different bee has been confirmed. However, it also became apparent that some of the networks play more of an educational than a scientific role. Furthermore, we draw on experience from a range of citizen science projects to make recommendations on how best to establish new citizen science projects in Ireland and strengthen existing ones.

Birds and bats diverge in the qualitative and quantitative components of seed dispersal of a pioneer tree

NASA Astrophysics Data System (ADS)

Jacomassa, Fábio André F.; Pizo, Marco Aurélio

2010-09-01

Although the overlap in fruit diet between birds and bats is low, they sometimes consume and compete for fruits of the same plant species. What is poorly known is how birds and bats compare with each other in relation to the effectiveness of seed dispersal. In this paper we contrasted birds and bats in relation to quantitative (the amount of fruits removed from plants) and qualitative (germination performance of seeds) components of the seed dispersal of Solanum granuloso- leprosum, a pioneer, small-seeded tree of open areas and forest edges in south Brazil. We tagged fruits on the plants and monitored their removal by day and night. We compared the final percent of germination and speed of germination of seeds ingested by birds and bats with non-ingested, control seeds. While bats removed more fruits than birds, performing better in the quantitative component, birds improved the germination performance of seeds, an aspect of the qualitative component of seed dispersal effectiveness. Although bats are more likely to deposit seeds in highly disturbed sites that favor the recruitment of pioneer plant species, birds frequent forest edges, which is also suitable habitat for S. granuloso- leprosum, We concluded that birds and bats are not 'redundant' seed dispersers for S. granuloso- leprosum because in conjunction they may enhance its recruitment by diversifying the microsites where seeds are deposited, performing in addition different ecological functions in terms of quantity and quality of dispersal.

Large-scale monitoring of shorebird populations using count data and N-mixture models: Black Oystercatcher (Haematopus bachmani) surveys by land and sea

USGS Publications Warehouse

Lyons, James E.; Andrew, Royle J.; Thomas, Susan M.; Elliott-Smith, Elise; Evenson, Joseph R.; Kelly, Elizabeth G.; Milner, Ruth L.; Nysewander, David R.; Andres, Brad A.

2012-01-01

Large-scale monitoring of bird populations is often based on count data collected across spatial scales that may include multiple physiographic regions and habitat types. Monitoring at large spatial scales may require multiple survey platforms (e.g., from boats and land when monitoring coastal species) and multiple survey methods. It becomes especially important to explicitly account for detection probability when analyzing count data that have been collected using multiple survey platforms or methods. We evaluated a new analytical framework, N-mixture models, to estimate actual abundance while accounting for multiple detection biases. During May 2006, we made repeated counts of Black Oystercatchers (Haematopus bachmani) from boats in the Puget Sound area of Washington (n = 55 sites) and from land along the coast of Oregon (n = 56 sites). We used a Bayesian analysis of N-mixture models to (1) assess detection probability as a function of environmental and survey covariates and (2) estimate total Black Oystercatcher abundance during the breeding season in the two regions. Probability of detecting individuals during boat-based surveys was 0.75 (95% credible interval: 0.42–0.91) and was not influenced by tidal stage. Detection probability from surveys conducted on foot was 0.68 (0.39–0.90); the latter was not influenced by fog, wind, or number of observers but was ~35% lower during rain. The estimated population size was 321 birds (262–511) in Washington and 311 (276–382) in Oregon. N-mixture models provide a flexible framework for modeling count data and covariates in large-scale bird monitoring programs designed to understand population change.

Monitoring programs need to take into account imperfect species detectability

USGS Publications Warehouse

Kery, M.; Schmid, Hans

2004-01-01

Biodiversiry monitoring is important to identify biological units in need of conservation and to check the effectiveness of conservation actions. Programs generally monitor species richness and its changes (trend). Usually, no correction is made for imperfect species detectability. Instead, it is assumed that each species present has the same probability of being recorded and that there is no difference in this detectability across space and time, e.g. among observers and habitats. Consequently, species richness is determined by enumeration as the sum of species recorded. In Switzerland, the federal government has recently launched a comprehensive program that aims at detecting changes in biodiversity at all levels of biological integration. Birds are an important part of that program. Since 1999, 23 visits per breeding season are made to each of >250 1 km2 squares to map the territories of all detected breeding bird species. Here, we analyse data from three squares to illustrate the use of capture-recapture models in monitoring to obtain detectability-corrected estimates of species richness and trend. Species detectability averaged only 85%. Hence an estimated 15% of species present remained overlooked even after three visits. Within a square, changes in detectability for different years were of the same magnitude when surveys were conducted by the same observer as when they were by different observers. Estimates of trend were usually biased and community turnover was overestimated when based on enumeration. Here we use bird data as an illustration of methods. However, species detectability for any taxon is unlikely ever to be perfect or even constant across categories to be compared. Therefore, monitoring programs should correct for species detectability.

The use of beached bird surveys for marine plastic litter monitoring in Ireland.

PubMed

Acampora, Heidi; Lyashevska, Olga; Van Franeker, Jan Andries; O'Connor, Ian

2016-09-01

Marine plastic litter has become a major threat to wildlife. Marine animals are highly susceptible to entanglement and ingestion of debris at sea. Governments all around the world are being urged to monitor litter sources and inputs, and to mitigate the impacts of marine litter, which is primarily composed of plastics. European policies, such as Oslo-Paris Convention (OSPAR) and Marine Strategy Framework Directive (MSFD) have adopted the monitoring of a seabird species, the Northern Fulmar (Fulmarus glacialis), as an environmental quality indicator through the analysis of stomach contents of beached Fulmar specimens. The aims of this research were to: firstly set a baseline investigation of multispecies of seabirds in Ireland affected by the ingestion of litter and, secondly to investigate the feasibility of using Fulmar and/or other potential species of seabird as an indicator for marine debris in Ireland through beached bird surveys. Within 30 months, 121 birds comprising 16 different species were collected and examined for the presence of litter. Of these, 27.3% (n = 33) comprising 12 different species were found to ingest litter, mainly plastics. The average mass of ingested litter was 0.141 g. Among 14 sampled Northern Fulmars, 13 (93%) had ingested plastic litter, all of them over the 0.1 g threshold used in OSPAR and MSFD policy target definitions. Results show that seabirds in Ireland are ingesting marine litter, as in many other countries in the world. Monitoring seabird litter ingestion has the potential to form part of a wider marine litter monitoring programme that can help to inform mitigation and management measures for marine litter. Copyright © 2016 Elsevier Ltd. All rights reserved.

A network monitor for HTTPS protocol based on proxy

NASA Astrophysics Data System (ADS)

Liu, Yangxin; Zhang, Lingcui; Zhou, Shuguang; Li, Fenghua

2016-10-01

With the explosive growth of harmful Internet information such as pornography, violence, and hate messages, network monitoring is essential. Traditional network monitors is based mainly on bypass monitoring. However, we can't filter network traffic using bypass monitoring. Meanwhile, only few studies focus on the network monitoring for HTTPS protocol. That is because HTTPS data is in the encrypted traffic, which makes it difficult to monitor. This paper proposes a network monitor for HTTPS protocol based on proxy. We adopt OpenSSL to establish TLS secure tunes between clients and servers. Epoll is used to handle a large number of concurrent client connections. We also adopt Knuth- Morris-Pratt string searching algorithm (or KMP algorithm) to speed up the search process. Besides, we modify request packets to reduce the risk of errors and modify response packets to improve security. Experiments show that our proxy can monitor the content of all tested HTTPS websites efficiently with little loss of network performance.

Use of mixed-function oxygenases to monitor contaminant exposure in wildlife

USGS Publications Warehouse

Rattner, B.A.; Hoffman, D.J.; Marn, C.M.

1989-01-01

This overview examines the utility of mixed-function oxygenase (MFO) enzymes as a bioeffects monitor for wildlife (amphibians, reptiles, birds and mammals) in view of their widespread use as indicators of contaminant exposure in aquatic invertebrates and fish. Phylogenetic trends in MFO activity, toxicological implications of induction and the relationship between contaminant exposure and MFO activity are discussed. Field studies using avian embryos and hatchlings suggest that MFO induction has utility for documenting contaminant exposure; however, findings in adult birds and mammals are equivocal. Age, sex and season are sources of variation that require consideration when undertaking field trials. Further understanding of MFO inducibility among species and application of recently developed analytical techniques including quantification of specific cytochrome P-450 isozymes are warranted.

Closed-loop bird-computer interactions: a new method to study the role of bird calls.

PubMed

Lerch, Alexandre; Roy, Pierre; Pachet, François; Nagle, Laurent

2011-03-01

In the field of songbird research, many studies have shown the role of male songs in territorial defense and courtship. Calling, another important acoustic communication signal, has received much less attention, however, because calls are assumed to contain less information about the emitter than songs do. Birdcall repertoire is diverse, and the role of calls has been found to be significant in the area of social interaction, for example, in pair, family, and group cohesion. However, standard methods for studying calls do not allow precise and systematic study of their role in communication. We propose herein a new method to study bird vocal interaction. A closed-loop computer system interacts with canaries, Serinus canaria, by (1) automatically classifying two basic types of canary vocalization, single versus repeated calls, as they are produced by the subject, and (2) responding with a preprogrammed call type recorded from another bird. This computerized animal-machine interaction requires no human interference. We show first that the birds do engage in sustained interactions with the system, by studying the rate of single and repeated calls for various programmed protocols. We then show that female canaries differentially use single and repeated calls. First, they produce significantly more single than repeated calls, and second, the rate of single calls is associated with the context in which they interact, whereas repeated calls are context independent. This experiment is the first illustration of how closed-loop bird-computer interaction can be used productively to study social relationships. © Springer-Verlag 2010

Forest Soil Disturbance Monitoring Protocol: Volume II: Supplementary methods, statistics, and data collection

Treesearch

Deborah S. Page-Dumroese; Ann M. Abbott; Thomas M. Rice

2009-01-01

Volume I and volume II of the Forest Soil Disturbance Monitoring Protocol (FSDMP) provide information for a wide range of users, including technicians, field crew leaders, private landowners, land managers, forest professionals, and researchers. Volume I: Rapid Assessment includes the basic methods for establishing forest soil monitoring transects and consistently...

Monitoring wilderness stream ecosystems

Treesearch

Jeffrey C. Davis; G. Wayne Minshall; Christopher T. Robinson; Peter Landres

2001-01-01

A protocol and methods for monitoring the major physical, chemical, and biological components of stream ecosystems are presented. The monitoring protocol is organized into four stages. At stage 1 information is obtained on a basic set of parameters that describe stream ecosystems. Each following stage builds upon stage 1 by increasing the number of parameters and the...

SU-F-R-11: Designing Quality and Safety Informatics Through Implementation of a CT Radiation Dose Monitoring Program

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilson, JM; Samei, E; Departments of Physics, Electrical and Computer Engineering, and Biomedical Engineering, and Medical Physics Graduate Program, Duke University, Durham, NC

2016-06-15

Purpose: Recent legislative and accreditation requirements have driven rapid development and implementation of CT radiation dose monitoring solutions. Institutions must determine how to improve quality, safety, and consistency of their clinical performance. The purpose of this work was to design a strategy and meaningful characterization of results from an in-house, clinically-deployed dose monitoring solution. Methods: A dose monitoring platform was designed by our imaging physics group that focused on extracting protocol parameters, dose metrics, and patient demographics and size. Compared to most commercial solutions, which focus on individual exam alerts and global thresholds, the program sought to characterize overall consistencymore » and targeted thresholds based on eight analytic interrogations. Those were based on explicit questions related to protocol application, national benchmarks, protocol and size-specific dose targets, operational consistency, outliers, temporal trends, intra-system variability, and consistent use of electronic protocols. Using historical data since the start of 2013, 95% and 99% intervals were used to establish yellow and amber parameterized dose alert thresholds, respectively, as a function of protocol, scanner, and size. Results: Quarterly reports have been generated for three hospitals for 3 quarters of 2015 totaling 27880, 28502, 30631 exams, respectively. Four adult and two pediatric protocols were higher than external institutional benchmarks. Four protocol dose levels were being inconsistently applied as a function of patient size. For the three hospitals, the minimum and maximum amber outlier percentages were [1.53%,2.28%], [0.76%,1.8%], [0.94%,1.17%], respectively. Compared with the electronic protocols, 10 protocols were found to be used with some inconsistency. Conclusion: Dose monitoring can satisfy requirements with global alert thresholds and patient dose records, but the real value is in optimizing patient-specific protocols, balancing image quality trade-offs that dose-reduction strategies promise, and improving the performance and consistency of a clinical operation. Data plots that capture patient demographics and scanner performance demonstrate that value.« less

Current selection for lower migratory activity will drive the evolution of residency in a migratory bird population.

PubMed

Pulido, Francisco; Berthold, Peter

2010-04-20

Global warming is impacting biodiversity by altering the distribution, abundance, and phenology of a wide range of animal and plant species. One of the best documented responses to recent climate change is alterations in the migratory behavior of birds, but the mechanisms underlying these phenotypic adjustments are largely unknown. This knowledge is still crucial to predict whether populations of migratory birds will adapt to a rapid increase in temperature. We monitored migratory behavior in a population of blackcaps (Sylvia atricapilla) to test for evolutionary responses to recent climate change. Using a common garden experiment in time and captive breeding we demonstrated a genetic reduction in migratory activity and evolutionary change in phenotypic plasticity of migration onset. An artificial selection experiment further revealed that residency will rapidly evolve in completely migratory bird populations if selection for shorter migration distance persists. Our findings suggest that current alterations of the environment are favoring birds wintering closer to the breeding grounds and that populations of migratory birds have strongly responded to these changes in selection. The reduction of migratory activity is probably an important evolutionary process in the adaptation of migratory birds to climate change, because it reduces migration costs and facilitates the rapid adjustment to the shifts in the timing of food availability during reproduction.

Health hazards to wild birds and risk factors associated with anthropogenic food provisioning

PubMed Central

Robinson, Robert A.; Risely, Kate; MacDonald, Susan

2018-01-01

Provision of supplementary food for wild birds at garden feeding stations is a common, large-scale and year-round practice in multiple countries including Great Britain (GB). While these additional dietary resources can benefit wildlife, there is a concomitant risk of disease transmission, particularly when birds repeatedly congregate in the same place at high densities and through interactions of species that would not normally associate in close proximity. Citizen science schemes recording garden birds are popular and can integrate disease surveillance with population monitoring, offering a unique opportunity to explore inter-relationships between supplementary feeding, disease epidemiology and population dynamics. Here, we present findings from a national surveillance programme in GB and note the dynamism of endemic and emerging diseases over a 25-year period, focusing on protozoal (finch trichomonosis), viral (Paridae pox) and bacterial (passerine salmonellosis) diseases with contrasting modes of transmission. We also examine the occurrence of mycotoxin contamination of food residues in bird feeders, which present both a direct and indirect (though immunosuppression) risk to wild bird health. Our results inform evidence-based mitigation strategies to minimize anthropogenically mediated health hazards, while maintaining the benefits of providing supplementary food for wild birds. This article is part of the theme issue ‘Anthropogenic resource subsidies and host–parasite dynamics in wildlife’. PMID:29531146

EPA Protocol Gas Verification Program

EPA Science Inventory

Accurate compressed gas calibration standards are needed to calibrate continuous emission monitors (CEMs) and ambient air quality monitors that are being used for regulatory purposes. US Environmental Protection Agency (EPA) established its traceability protocol to ensure that co...

Genetic analyses of H5N1 avian influenza virus in Mongolia, 2009 and its relationship with those of eastern Asia.

PubMed

Kang, Hyun-Mi; Batchuluun, Damdinjav; Kim, Min-Chul; Choi, Jun-Gu; Erdene-Ochir, Tseren-Ochir; Paek, Mi-Ra; Sugir, Tsengee; Sodnomdarjaa, Ruuragchaa; Kwon, Jun-Hun; Lee, Youn-Jeong

2011-01-10

In May and August 2009, 14 highly pathogenic H5N1 isolates were obtained from migratory birds in central Mongolia. To trace the genetic lineage of the isolates, nucleotide sequences of all eight genes were determined and phylogenetically analyzed. Hemagglutinin and nucleoprotein genes were clustered in clade 2.3.2. The polymerase acidic gene was related to the isolates of South Korea and Japan obtained in 2003 and 2004 outbreaks, and a migratory duck isolate from Jiangxi, China. The neuraminidase and other internal genes were closely related to those of clade 2.3.4 viruses. The results indicate evolving genetic diversity of the hemagglutinin gene and acquisition of different polymerase acidic gene in the 2009 Mongolian isolates, likely via bird migration. Prevention of potentially wider outbreak in domestic poultry and accurate monitoring of H5N1 genetic mutation will require continuous monitoring for H5N1 in both domestic and wild birds, and will necessitate international cooperation with neighboring countries sharing migratory flyways. Copyright © 2010. Published by Elsevier B.V.

The avian respiratory system: a unique model for studies of respiratory toxicosis and for monitoring air quality.

PubMed Central

Brown, R E; Brain, J D; Wang, N

1997-01-01

There are many distinct differences (morphologic, physiologic, and mechanical) between the bird's lung-air-sac respiratory system and the mammalian bronchoalveolar lung. In this paper, we review the physiology of the avian respiratory system with attention to those mechanisms that may lead to significantly different results, relative to those in mammals, following exposure to toxic gases and airborne particulates. We suggest that these differences can be productively exploited to further our understanding of the basic mechanisms of inhalant toxicology (gases and particulates). The large mass-specific gas uptake by the avian respiratory system, at rest and especially during exercise, could be exploited as a sensitive monitor of air quality. Birds have much to offer in our understanding of respiratory toxicology, but that expectation can only be realized by investigating, in a wide variety of avian taxa, the pathophysiologic interactions of a broad range of inhaled toxicants on the bird's unique respiratory system. Images p188-a Figure 1. Figure 2. Figure 3. Figure 4. Figure 5. A Figure 5. B Figure 5. C Figure 6. Figure 7. Figure 8. PMID:9105794

Field Marks of a Celebration: Roger Tory Peterson's Centennial Birthday

USGS Publications Warehouse

Dunlap, J.; Robbins, C.S.

2008-01-01

A red letter day in my life was April 27, 1934, the day I first met Roger. A birding friend, Elisha Atkins, had invited Clinton Reynolds and me to dinner to meet a famous ornithologist. We would all be going on a field trip to Newburyport on the Massachusetts coast the next day. The dinner conversation revolved about a new field guide that Mr. Peterson had just completed and that would be available in a few days. I couldn?t wait to see it! I had been birding since 1930, keying out live birds with Chapman?s Handbook of Birds of Eastern North America (1912) and Hoffman?s Guide to the Birds of New England and Eastern New York (1904). Both books had extensive keys based on color, size, bill shape and season, and pictures of heads or feet of some species. Positive bird identification was a long and tedious process. The field trip the next day with Roger was memorable, not for finding any rare or unusual birds, but for learning how to identify birds to species at a single good glance. I recall asking Roger if he could find a ring-billed gull among a group of gulls resting on a roof beside the Merrimac River. He immediately said, ?No there aren?t any ring-bills there; they would be immediately apparent by their slimmer shape.? There was no need to check the foot color on each bird. While it is easy to say that Roger revolutionized field guides, I truly believe there are few people worldwide under the age of 90 who can really appreciate the difference between the old way of keying out birds and the instant recognition promoted by the Peterson system. Today we take for granted that amateurs can identify birds accurately. Monitoring bird populations by Breeding Bird Surveys, atlas studies, Breeding Bird Censuses, migration banding, and many other studies relies on it. None of these would be possible if we were still keying out live birds using books designed to identify dead birds in the hand.

Foraging Strategies of Laysan Albatross Inferred from Stable Isotopes: Implications for Association with Fisheries

PubMed Central

Edwards, Ann E.; Fitzgerald, Shannon M.; Parrish, Julia K.; Klavitter, John L.; Romano, Marc D.

2015-01-01

Fatal entanglement in fishing gear is the leading cause of population decline for albatross globally, a consequence of attraction to bait and fishery discards of commercial fishing operations. We investigated foraging strategies of Laysan albatross (Phoebastria immutabilis), as inferred from nitrogen and carbon isotope values of primary feathers, to determine breeding-related, seasonal, and historic factors that may affect the likelihood of association with Alaskan or Hawaiian longline fisheries. Feather samples were collected from live birds monitored for breeding status and breeding success on Midway Atoll in the northwestern Hawaiian Islands, birds salvaged as fisheries-bycatch, and birds added to museum collections before 1924. During the chick-rearing season (sampled April-May), means and variances of stable isotope values of birds with the highest, most consistent reproductive success were distinct from less productive conspecifics and completely different from birds caught in Hawaiian or Alaskan longline fisheries, suggesting birds with higher multi-annual reproductive success were less likely to associate with these fisheries. Contemporary birds with the highest reproductive success had mean values most similar to historic birds. Values of colony-bound, courting prebreeders were similar to active breeders but distinct from prebreeders caught in Alaskan longline fisheries. During the breeding season, δ15N values were highly variable for both contemporary and historic birds. Although some historic birds exhibited extremely low δ15N values unmatched by contemporary birds (< 11.2‰), others had values as high as the highest fishery-associated contemporary birds. During the non-breeding season (sampled July-September), isotopic variability coalesced into a more narrow set of values for both contemporary and historic birds. Our results suggest that foraging strategies of Laysan albatross are a complex function of season, breeding status, and multi-annual breeding success, factors that likely affect the probability of association with fisheries. PMID:26230731

Hand-rearing and sex determination tool for the Taveta golden weaver (Ploceus castaneiceps).

PubMed

Breeding, Shawnlei; Ferrie, Gina M; Schutz, Paul; Leighty, Katherine A; Plassé, Chelle

2012-01-01

Improvements in the ability to hand-rear birds in captivity have aided zoological institutions in the sustainable management of these species, and have provided opportunities to examine their physical growth in varying conditions. Monitoring the weight gain and development of chicks is an important aspect of developing a hand-rearing protocol. In this paper we provide the institutional history for a colonial species of passerine, the Taveta golden weaver, at Disney's Animal Kingdom®, in order to demonstrate the methods of establishing a successful breeding program which largely incorporates hand-rearing in management of the population. We also tested if we could accurately predict sex of chicks using weights collected on Day 14 during the hand-rearing process. Using this tool, we were able to correctly determine sex before fledging in more than 83% of chicks. Early sex determination is important in captive species for genetic management and husbandry purposes. While genetic sexing can be expensive, we found that using growth curves to determine sex can be a reliable and cost-effective tool for population management of a colonial passerine. © 2012 Wiley Periodicals, Inc.

9 CFR 82.2 - Criteria for determining birds or poultry to be infected with, exposed to, or free from END.

Code of Federal Regulations, 2013 CFR

2013-01-01

... of the following factors: clinical evidence (signs, post-mortem lesions, and history of the..., Animal and Plant Health Inspection Service, 4700 River Road, Unit 41, Riverdale, MD 20737-1231, or by... Road Unit 41, Riverdale, MD 20737-1231. The protocols are also found in “Recommended Uniform Diagnostic...

9 CFR 82.2 - Criteria for determining birds or poultry to be infected with, exposed to, or free from END.

Code of Federal Regulations, 2012 CFR

2012-01-01

... of the following factors: clinical evidence (signs, post-mortem lesions, and history of the..., Animal and Plant Health Inspection Service, 4700 River Road, Unit 41, Riverdale, MD 20737-1231, or by... Road Unit 41, Riverdale, MD 20737-1231. The protocols are also found in “Recommended Uniform Diagnostic...

9 CFR 82.2 - Criteria for determining birds or poultry to be infected with, exposed to, or free from Newcastle...

Code of Federal Regulations, 2014 CFR

2014-01-01

... one or more of the following factors: clinical evidence (signs, post-mortem lesions, and history of... Plant Health Inspection Service, 4700 River Road, Unit 41, Riverdale, MD 20737-1231, or by referring to..., 4700 River Road Unit 41, Riverdale, MD 20737-1231. The protocols are also found in “Recommended Uniform...

9 CFR 82.2 - Criteria for determining birds or poultry to be infected with, exposed to, or free from END.

Code of Federal Regulations, 2011 CFR

2011-01-01

... veterinarians and State veterinarians may be obtained by writing to Emergency Programs, Veterinary Services... referring to the local telephone book. 2 A copy of the protocols for END diagnostic tests may be obtained by writing to Emergency Programs, Veterinary Services, Animal and Plant Health Inspection Service, 4700 River...

Assessing vulnerability of marine bird populations to offshore wind farms.

PubMed

Furness, Robert W; Wade, Helen M; Masden, Elizabeth A

2013-04-15

Offshore wind farms may affect bird populations through collision mortality and displacement. Given the pressures to develop offshore wind farms, there is an urgent need to assess population-level impacts on protected marine birds. Here we refine an approach to assess aspects of their ecology that influence population vulnerability to wind farm impacts, also taking into account the conservation importance of each species. Flight height appears to be a key factor influencing collision mortality risk but improved data on flight heights of marine birds are needed. Collision index calculations identify populations of gulls, white-tailed eagles, northern gannets and skuas as of particularly high concern in Scottish waters. Displacement index calculations identify populations of divers and common scoters as most vulnerable to population-level impacts of displacement, but these are likely to be less evident than impacts of collision mortality. The collision and displacement indices developed here for Scottish marine bird populations could be applied to populations elsewhere, and this approach will help in identifying likely impacts of future offshore wind farms on marine birds and prioritising monitoring programmes, at least until data on macro-avoidance rates become available. Copyright © 2013 Elsevier Ltd. All rights reserved.

Cicadas impact bird communication in a noisy tropical rainforest

PubMed Central

Hall, Robert; Ray, William; Beck, Angela; Zook, James

2015-01-01

Many animals communicate through acoustic signaling, and “acoustic space” may be viewed as a limited resource that organisms compete for. If acoustic signals overlap, the information in them is masked, so there should be selection toward strategies that reduce signal overlap. The extent to which animals are able to partition acoustic space in acoustically diverse habitats such as tropical forests is poorly known. Here, we demonstrate that a single cicada species plays a major role in the frequency and timing of acoustic communication in a neotropical wet forest bird community. Using an automated acoustic monitor, we found that cicadas vary the timing of their signals throughout the day and that the frequency range and timing of bird vocalizations closely track these signals. Birds significantly avoid temporal overlap with cicadas by reducing and often shutting down vocalizations at the onset of cicada signals that utilize the same frequency range. When birds do vocalize at the same time as cicadas, the vocalizations primarily occur at nonoverlapping frequencies with cicada signals. Our results greatly improve our understanding of the community dynamics of acoustic signaling and reveal how patterns in biotic noise shape the frequency and timing of bird vocalizations in tropical forests. PMID:26023277

Avian Influenza in wild birds from Chile, 2007-2009.

PubMed

Mathieu, Christian; Moreno, Valentina; Pedersen, Janice; Jeria, Julissa; Agredo, Michel; Gutiérrez, Cristian; García, Alfonso; Vásquez, Marcela; Avalos, Patricia; Retamal, Patricio

2015-03-02

Aquatic and migratory birds, the main reservoir hosts of avian influenza viruses including those with high pathogenic potential, are the wildlife species with the highest risk for viral dissemination across countries and continents. In 2002, the Chilean poultry industry was affected with a highly pathogenic avian influenza strain, which created economic loss and triggered the establishment of a surveillance program in wild birds. This effort consisted of periodic samplings of sick or suspicious animals found along the coast and analyses with standardized techniques for detection of influenza A virus. The aim of this work is to report the detection of three avian influenza strains (H13N2, H5N9, H13N9) in gulls from Chile between 2007-2009, which nucleotide sequences showed highest similitudes to viruses detected in wild birds from North America. These results suggest a dissemination route for influenza viruses along the coasts of Americas. Migratory and synanthropic behaviors of birds included in this study support continued monitoring of avian influenza viruses isolated from wild birds in The Americas and the establishment of biosecurity practices in farms. Copyright © 2015 Elsevier B.V. All rights reserved.

Handbook of field methods for monitoring landbirds

Treesearch

C.J. Ralph; G.R. Geupel; P. Pyle; T.E. Martin; D.F. DeSante

1993-01-01

The increased attention devoted to the status and possible declines of populations of smaller species of terrestrial birds, known collectively as "landbirds," has resulted in an immediate need for specific methodology for monitoring their populations. This handbook is derived from several sources and is based on the authors’ collective experiences in...

Terrestrial vegetation monitoring protocol for the Mediterranean Coast Network—Cabrillo National Monument, Channel Islands National Park, and Santa Monica Mountains National Recreation Area: Standard Operating Procedures, Version 1.0

USGS Publications Warehouse

Tiszler, John; Rodriguez, Dirk; Lombardo, Keith; Sagar, Tarja; Aguilar, Luis; Lee, Lena; Handley, Timothy; McEachern, A. Kathryn; Harrod Starcevich, Leigh Ann; Witter, Marti; Philippi, Tom; Ostermann-Kelm, Stacey

2016-01-01

These Standard Operating Procedures are one part of a two-part protocol for monitoring terrestrial vegetation in the Mediterranean Coast Network. The second part of the protocol is the narrative:Tiszler, J., D. Rodriguez, K. Lombardo, T. Sagar, L. Aguilar, L. Lee, T. Handley, K. McEachern, L. Starcevich, M. Witter, T. Philippi, and S. Ostermann-Kelm. 2016. Terrestrial vegetation monitoring protocol for the Mediterranean Coast Network—Cabrillo National Monument, Channel Islands National Park, and Santa Monica Mountains National Recreation Area: Narrative, version 1.0. Natural Resource Report NPS/MEDN/NRR—2016/1296. National Park Service, Fort Collins, Colorado.National parks in the Mediterranean Inventory and Monitoring Network:Cabrillo National Monument (CABR)Channel Islands National Park (CHIS)Santa Monica Mountains National Recreation Area (SAMO)

Extremely Low Frequency (ELF) Communications System Ecological Monitoring Program: Plan and Summary of 1982 Progress.

DTIC Science & Technology

1983-08-01

Program Acquisition Schedule A-8 LIST OF TABLES TABLE TITLE Page 1 Evolution of the ELF Communications Ecological 2 Moni tori ng Program 2 Summary of...performed on plots in maple-dominant, mixed hardwood stands in Michigan. NATIVE BEES Bees are important pollinators of flowering plants and are...SMALL MAMMALS AND NESTING BIRDS Small mammals and nesting birds represent an ecological level inter- mediate between plants and strict carnivores

The impact of eastern equine encephalitis virus on efforts to recover the endangered whooping crane

USGS Publications Warehouse

Carpenter, J.W.; Clark, G.G.; Watts, D.M.; Cooper, J.E.

1989-01-01

The whooping crane (Grus americana), although never abundant in North America, became endangered primarily because of habitat modification and destruction. To help recovery, a captive propagation and reintroduction program was initiated at the Patuxent Wildlife Research Center (PWRC) in 1966. However, in 1984, 7 of 39 whooping cranes at PWRC died from infection by eastern equine encephalitis (EEE) virus, an arbovirus that infects a wide variety of indigenous bird species, although mortality is generally restricted to introduced birds. Following identification of the aetiological agent, surveillance and control measures were implemented, including serological monitoring of both wild and captive birds for EEE viral antibody and assay of locally-trapped mosquitoes for virus. In addition, an inactivated EEE virus vaccine developed for use in humans was evaluated in captive whooping cranes. Results so far suggest that the vaccine will afford protection to susceptible birds.

Plastics and other anthropogenic debris in freshwater birds from Canada.

PubMed

Holland, Erika R; Mallory, Mark L; Shutler, Dave

2016-11-15

Plastics in marine environments are a global environmental issue. Plastic ingestion is associated with a variety of deleterious health effects in marine wildlife, and is a focus of much international research and monitoring. However, little research has focused on ramifications of plastic debris for freshwater organisms, despite marine and freshwater environments often having comparable plastic concentrations. We quantified plastic and other anthropogenic debris in 350 individuals of 17 freshwater and one marine bird species collected across Canada. We determined freshwater birds' anthropogenic debris ingestion rates to be 11.1% across all species studied. This work establishes that plastics and other anthropogenic debris are a genuine concern for management of the health of freshwater ecosystems, and provides a baseline for the prevalence of plastic and other anthropogenic debris ingestion in freshwater birds in Canada, with relevance for many other locations. Copyright © 2016 Elsevier B.V. All rights reserved.

IoT real time data acquisition using MQTT protocol

NASA Astrophysics Data System (ADS)

Atmoko, R. A.; Riantini, R.; Hasin, M. K.

2017-05-01

The Internet of Things (IoT) provides ease to monitor and to gain sensor data through the Internet [1]. The need of high quality data is increasing to the extent that data monitoring and acquisition system in real time is required, such as smart city or telediagnostic in medical areas [2]. Therefore, an appropriate communication protocol is required to resolve these problems. Lately, researchers have developed a lot of communication protocols for IoT, of which each has advantages and disadvantages. This study proposes the utilization of MQTT as a communication protocol, which is one of data communication protocols for IoT. This study used temperature and humidity sensors because the physical parameters are often needed as parameters of environment condition [3]. Data acquisition was done in real-time and stored in MySQL database. This study is also completed by interface web-based and mobile for online monitoring. This result of this study is the enhancement of data quality and reliability using MQTT protocol.

Evidence supporting the need for a common soil monitoring protocol

Treesearch

Derrick A. Reeves; Mark D. Coleman; Deborah S. Page-Dumroese

2013-01-01

Many public land management agencies monitor forest soils for levels of disturbance related to management activities. Although several soil disturbance monitoring protocols based on visual observation have been developed to assess the amount and types of disturbance caused by forest management, no common method is currently used on National Forest lands in the United...

An inventory and monitoring plan for a Sonoran Desert ecosystem; Barry M. Goldwater Range-West

USGS Publications Warehouse

Villarreal, Miguel L.; van Riper, Charles; Lovich, Robert E.; Palmer, Robert L.; Nauman, Travis; Studd, Sarah E.; Drake, Sam; Rosenberg, Abigail S.; Malusa, Jim; Pearce, Ronald L.

2011-01-01

Marine Corps Air Station Yuma manages the Barry M. Goldwater Range-West, which encompasses approximately 2,800 square kilometers of Sonoran Desert habitat in southwestern Arizona. The Barry M. Goldwater Range is a major U.S. military installation designed as an air combat training location for the U.S. Marine Corps and U.S. Air Force, but it also includes some of the most pristine desert habitat in the United States. In an effort to ensure the long-term viability of this unique natural resource, the U.S. Geological Survey (USGS) has developed an Integrated Natural Resources Management Plan and Inventory and Monitoring Plan to guide natural resource management of the Barry M. Goldwater Range-West. This Inventory and Monitoring Plan provides a framework for long-term ecosystem monitoring on Barry M. Goldwater Range-West lands by identifying existing and potential threats to ecosystem function, prioritizing resources for monitoring, and providing information and protocols necessary to initiate a long-term ecosystem monitoring program. The Inventory and Monitoring Plan and related protocols were developed through extensive review of existing Sonoran Desert monitoring programs and monitoring literature and through a 2-day workshop with resource managers, monitoring experts, and other stakeholders. The Barry M. Goldwater Range-West Inventory and Monitoring Plan stresses the importance of regional monitoring partnerships and protocol standardization for understanding landscape-scale ecosystem changes in the Sonoran Desert; information and protocols contained within the plan may also be of interest to land managers engaged in large-scale ecosystem monitoring and adaptive management of other arid regions.

Improvement of burn pain management through routine pain monitoring and pain management protocol.

PubMed

Yang, Hyeong Tae; Hur, Giyeun; Kwak, In-Suk; Yim, Haejun; Cho, Yong Suk; Kim, Dohern; Hur, Jun; Kim, Jong Hyun; Lee, Boung Chul; Seo, Cheong Hoon; Chun, Wook

2013-06-01

Pain management is an important aspect of burn management. We developed a routine pain monitoring system and pain management protocol for burn patients. The purpose of this study is to evaluate the effectiveness of our new pain management system. From May 2011 to November 2011, the prospective study was performed with 107 burn patients. We performed control group (n=58) data analysis and then developed the pain management protocol and monitoring system. Next, we applied our protocol to patients and performed protocol group (n=49) data analysis, and compared this to control group data. Data analysis was performed using the Numeric Rating Scale (NRS) of background pain and procedural pain, Clinician-Administered PTSD Scale (CAPS), Hamilton Depression Rating Scale (HDRS), State-Trait Anxiety Inventory Scale (STAIS), and Holmes and Rahe Stress Scale (HRSS). The NRS of background pain for the protocol group was significantly decreased compared to the control group (2.8±2.0 versus 3.9±1.9), and the NRS of procedural pain of the protocol group was significantly decreased compared to the control group (4.8±2.8 versus 3.7±2.5). CAPS and HDRS were decreased in the protocol group, but did not have statistical significance. STAIS and HRSS were decreased in the protocol group, but only the STAIS had statistical significance. Our new pain management system was effective in burn pain management. However, adequate pain management can only be accomplished by a continuous and thorough effort. Therefore, pain control protocol and pain monitoring systems need to be under constant revision and improvement using creative ideas and approaches. Copyright © 2012 Elsevier Ltd and ISBI. All rights reserved.

RadWorks Project. ISS REM - to - BIRD - to - HERA: The Evolution of a Technology

NASA Technical Reports Server (NTRS)

McLeod, Catherine D.

2015-01-01

The advancement of particle detectors based on technologies developed for use in high-energy physics applications has enabled the development of a completely new generation of compact low-power active dosimeters and area monitors for use in space radiation environments. One such device, the TimePix, is being developed at CERN, and is providing the technology basis for the most recent line of radiation detection devices being developed by the NASA AES RadWorks project. The most fundamental of these devices, an ISS-Radiation Environment Monitor (REM), is installed as a USB device on ISS where it is monitoring the radiation environment on a perpetual basis. The second generation of this TimePix technology, the BIRD (Battery-operated Independent Radiation Detector), was flown on the NASA EFT-1 flight in December 2014. Data collected by BIRD was the first data made available from the Trapped Belt region of the Earth's atmosphere in over 40 years. The 3rdgeneration of this technology, the HERA (Hybrid Electronic Radiation Assessor), is planned to be integrated into the Orion EM-1, and EM-2 vehicles where it will monitor the radiation environment. For the EM-2 flight, HERA will provide Caution and Warning notification for SPEs as well as real time dose measurements for crew members. The development of this line of radiation detectors provide much greater information and characterization of charged particles in the space radiation environment than has been collected in the past, and in the process provide greater information to inform crew members of radiation related risks, while being very power and mass efficient.

A protocol using coho salmon to monitor Tongass National Forest Land and Resource Management Plan standards and guidelines for fish habitat.

Treesearch

M.D. Bryant; Trent McDonald; R. Aho; B.E. Wright; Michelle Bourassa Stahl

2008-01-01

We describe a protocol to monitor the effectiveness of the Tongass Land Management Plan (TLMP) management standards for maintaining fish habitat. The protocol uses juvenile coho salmon (Oncorhynchus kisutch) in small tributary streams in forested watersheds. We used a 3-year pilot study to develop detailed methods to estimate juvenile salmonid...

Supervised versus unsupervised technology-based levodopa monitoring in Parkinson's disease: an intrasubject comparison.

PubMed

Lopane, Giovanna; Mellone, Sabato; Corzani, Mattia; Chiari, Lorenzo; Cortelli, Pietro; Calandra-Buonaura, Giovanna; Contin, Manuela

2018-06-01

We aimed to assess the intrasubject reproducibility of a technology-based levodopa (LD) therapeutic monitoring protocol administered in supervised versus unsupervised conditions in patients with Parkinson's disease (PD). The study design was pilot, intrasubject, single center, open and prospective. Twenty patients were recruited. Patients performed a standardized monitoring protocol instrumented by an ad hoc embedded platform after their usual first morning LD dose in two different randomized ambulatory sessions: one under a physician's supervision, the other self-administered. The protocol is made up of serial motor and non-motor tests, including alternate finger tapping, Timed Up and Go test, and measurement of blood pressure. Primary motor outcomes included comparisons of intrasubject LD subacute motor response patterns over the 3-h test in the two experimental conditions. Secondary outcomes were the number of intrasession serial test repetitions due to technical or handling errors and patients' satisfaction with the unsupervised LD monitoring protocol. Intrasubject LD motor response patterns were concordant between the two study sessions in all patients but one. Platform handling problems averaged 4% of total planned serial tests for both sessions. Ninety-five percent of patients were satisfied with the self-administered LD monitoring protocol. To our knowledge, this study is the first to explore the potential of unsupervised technology-based objective motor and non-motor tasks to monitor subacute LD dosing effects in PD patients. The results are promising for future telemedicine applications.

How long do the dead survive on the road? Carcass persistence probability and implications for road-kill monitoring surveys.

PubMed

Santos, Sara M; Carvalho, Filipe; Mira, António

2011-01-01

Road mortality is probably the best-known and visible impact of roads upon wildlife. Although several factors influence road-kill counts, carcass persistence time is considered the most important determinant underlying underestimates of road mortality. The present study aims to describe and model carcass persistence variability on the road for different taxonomic groups under different environmental conditions throughout the year; and also to assess the effect of sampling frequency on the relative variation in road-kill estimates registered within a survey. Daily surveys of road-killed vertebrates were conducted over one year along four road sections with different traffic volumes. Survival analysis was then used to i) describe carcass persistence timings for overall and for specific animal groups; ii) assess optimal sampling designs according to research objectives; and iii) model the influence of road, animal and weather factors on carcass persistence probabilities. Most animal carcasses persisted on the road for the first day only, with some groups disappearing at very high rates. The advisable periodicity of road monitoring that minimizes bias in road mortality estimates is daily monitoring for bats (in the morning) and lizards (in the afternoon), daily monitoring for toads, small birds, small mammals, snakes, salamanders, and lagomorphs; 1 day-interval (alternate days) for large birds, birds of prey, hedgehogs, and freshwater turtles; and 2 day-interval for carnivores. Multiple factors influenced the persistence probabilities of vertebrate carcasses on the road. Overall, the persistence was much lower for small animals, on roads with lower traffic volumes, for carcasses located on road lanes, and during humid conditions and high temperatures during the wet season and dry seasons, respectively. The guidance given here on monitoring frequencies is particularly relevant to provide conservation and transportation agencies with accurate numbers of road-kills, realistic mitigation measures, and detailed designs for road monitoring programs.

How Long Do the Dead Survive on the Road? Carcass Persistence Probability and Implications for Road-Kill Monitoring Surveys

PubMed Central

Santos, Sara M.; Carvalho, Filipe; Mira, António

2011-01-01

Background Road mortality is probably the best-known and visible impact of roads upon wildlife. Although several factors influence road-kill counts, carcass persistence time is considered the most important determinant underlying underestimates of road mortality. The present study aims to describe and model carcass persistence variability on the road for different taxonomic groups under different environmental conditions throughout the year; and also to assess the effect of sampling frequency on the relative variation in road-kill estimates registered within a survey. Methodology/Principal Findings Daily surveys of road-killed vertebrates were conducted over one year along four road sections with different traffic volumes. Survival analysis was then used to i) describe carcass persistence timings for overall and for specific animal groups; ii) assess optimal sampling designs according to research objectives; and iii) model the influence of road, animal and weather factors on carcass persistence probabilities. Most animal carcasses persisted on the road for the first day only, with some groups disappearing at very high rates. The advisable periodicity of road monitoring that minimizes bias in road mortality estimates is daily monitoring for bats (in the morning) and lizards (in the afternoon), daily monitoring for toads, small birds, small mammals, snakes, salamanders, and lagomorphs; 1 day-interval (alternate days) for large birds, birds of prey, hedgehogs, and freshwater turtles; and 2 day-interval for carnivores. Multiple factors influenced the persistence probabilities of vertebrate carcasses on the road. Overall, the persistence was much lower for small animals, on roads with lower traffic volumes, for carcasses located on road lanes, and during humid conditions and high temperatures during the wet season and dry seasons, respectively. Conclusion/Significance The guidance given here on monitoring frequencies is particularly relevant to provide conservation and transportation agencies with accurate numbers of road-kills, realistic mitigation measures, and detailed designs for road monitoring programs. PMID:21980437

2018 EPA Protocol Gas Verification Program Participants

EPA Pesticide Factsheets

A list of participants for 2016 EPA's Protocol Gas Verification Program (PGVP) for stationary source monitoring. The list also has vendor IDs, which are production site-specific, and are the same ones used in the PGVP for ambient air monitoring.

Current Status of EPA Protocol Gas Verification Program

EPA Science Inventory

Accurate compressed gas reference standards are needed to calibrate and audit continuous emission monitors (CEMs) and ambient air quality monitors that are being used for regulatory purposes. US Environmental Protection Agency (EPA) established its traceability protocol to ensur...

Multi-Season Regional Analysis of Multi-Species Occupancy: Implications for Bird Conservation in Agricultural Lands in East-Central Argentina

PubMed Central

Goijman, Andrea Paula; Conroy, Michael. J.; Bernardos, Jaime Nicolás; Zaccagnini, María Elena

2015-01-01

Rapid expansion and intensification of agriculture create challenges for the conservation of biodiversity and associated ecosystem services. In Argentina, the total row crop planted area has increased in recent decades with the expansion of soybean cultivation, homogenizing the landscape. In 2003 we started the first long-term, large-scale bird monitoring program in agroecosystems of central Argentina, in portions of the Pampas and Espinal ecoregions. Using data from this program, we evaluated the effect of land use and cover extent on birds between 2003-2012, accounting for imperfect detection probabilities using a Bayesian hierarchical, multi-species and multi-season occupancy model. We tested predictions that species diversity is positively related to habitat heterogeneity, which in intensified agroecosystems is thought to be mediated by food availability; thus the extent of land use and cover is predicted to affect foraging guilds differently. We also infer about ecosystem services provisioning and inform management recommendations for conservation of birds. Overall our results support the predictions. Although many species within each guild responded differently to land use and native forest cover, we identified generalities for most trophic guilds. For example, granivorous gleaners, ground insectivores and omnivores responded negatively to high proportions of soybean, while insectivore gleaners and aerial foragers seemed more tolerant. Habitat heterogeneity would likely benefit most species in an intensified agroecosystem, and can be achieved with a diversity of crops, pastures, and natural areas within the landscape. Although most studied species are insectivores, potentially beneficial for pest control, some guilds such as ground insectivores are poorly represented, suggesting that agricultural intensification reduces ecological functions, which may be recovered through management. Continuation of the bird monitoring program will allow us to continue to inform for conservation of birds in agroecosystems, identify research needed to reduce key uncertainties, and anticipate the effects of changes in agriculture in central Argentina. PMID:26086250

Evaluation of the limulus amoebocyte lysate test in conjunction with a gram negative bacterial plate count for detecting irradiation of chicken

NASA Astrophysics Data System (ADS)

Scotter, Susan L.; Wood, Roger; McWeeny, David J.

A study to evaluate the potential of the Limulus amoebocyte lysate (LAL) test in conjuction with a Gram negative bacteria (GNB) plate count for detecting the irradiation of chicken is described. Preliminary studies demonstrated that chickens irradiated at an absorbed dose of 2.5 kGy could be differentiated from unirradiated birds by measuring levels of endotoxin and of numbers of GNB on chicken skin. Irradiated birds were found to have endotoxin levels similar to those found in unirradiated birds but significantly lower numbers of GNB. In a limited study the test was found to be applicable to birds from different processors. The effect of temperature abuse on the microbiological profile, and thus the efficacy of the test, was also investigated. After temperature abuse, the irradiated birds were identifiable at worst up to 3 days after irradiation treatment at the 2.5 kGy level and at best some 13 days after irradiation. Temperature abuse at 15°C resulted in rapid recovery of surviving micro-organisms which made differentiation of irradiated and unirradiated birds using this test unreliable. The microbiological quality of the bird prior to irradiation treatment also affected the test as large numbers of GNB present on the bird prior to irradiation treatment resulted in larger numbers of survivors. In addition, monitoring the developing flora after irradiation treatment and during subsequent chilled storage also aided differentiation of irradiated and unirradiated birds. Large numbers of yeasts and Gram positive cocci were isolated from irradiated carcasses whereas Gram negative oxidative rods were the predominant spoilage flora on unirradiated birds.

Estimating Risk to Humans Exposed to Highly Pathogenic Avian Influenza Outbreaks in the United States, 2014–2017

PubMed Central

Olsen, Sonja; Havers, Fiona; Rolfes, Melissa; Blanton, Lenee; Rooney, Jane; Gomez, Thomas; Nelson, Deborah; Karli, Steven; Trock, Susan C; Fry, Alicia M

2017-01-01

Abstract Background In the USA, poultry outbreaks of highly pathogenic avian influenza viruses (AI) caused by H5 and H7 viruses have raised concern about the risk of infections in humans. Based on data from Asian lineage H5 and H7 AI, which sporadically transmit from poultry to humans, CDC currently recommends active daily monitoring of persons exposed to H5 and H7 AI viruses, including those who wear personal protective equipment (PPE). Methods Persons exposed to HPAI-infected birds or contaminated environments in the USA were actively monitored during exposure and for 10 days post-exposure for illness, during 2014–2017. Some exposed persons were monitored on-site by USDA or contract safety officers, company staff, or state health officials. State health department staff monitored people during the 10-day post-exposure period. Persons reporting any respiratory illness or conjunctivitis were swabbed for molecular influenza testing. Preliminary results are presented. Results From 2014 to 2017, 270 detections in poultry/wild birds were reported and at least 606 persons were potentially exposed to AI virus by exposure to birds, carcasses, or environment. Most exposed persons wore PPE. No human infections with AI viruses were detected. Conclusion The risk of transmission of these H5 and H7 AI viruses to humans was low. These preliminary data offer evidence to change the recommendations for monitoring in persons exposed to these viruses. If final data support these findings, self-monitoring by workers with reporting to health departments if symptoms develop, rather than active monitoring by public health personnel, could be considered. However, it will be important to reconsider and update recommendations as the viruses evolve. Furthermore, risk of infection likely varies by exposure and those without PPE should be actively monitored. Year HPAI virus No. of detections reported Estimated no. birds destroyed No. of persons exposed No. HPAI positive/no. of ill and tested Percent ill of all exposed (95% exact binomial confidence interval) December 2014–June 2015 H5N2 H5N8 H5N1 H5 241 22 2 15,639,861 254,669 0 103 56 3 2 164 0/5 0 (0–0.02) 2016 H7N8 H5N2 1 1 42,600 0 319 Missing 0/20 Missing 0 (0–0.01) 2017 H7N9 H5N2 2 1 127,956 0 123 Missing 0/1 Missing 0 (0–0.03) Disclosures All authors: No reported disclosures.

Evaluation of the efficacy of the crude extracts of Capsicum frutescens, Citrus limon and Opuntia vulgaris against Newcastle disease in domestic fowl in Tanzania.

PubMed

Mtambo, M M; Mushi, E J; Kinabo, L D; Maeda-Machang'u, A; Mwamengele, G L; Yongolo, M G; Temu, R P

1999-12-15

Prophylactic and therapeutic efficacy of a combination of Capsicum frutescens (red pepper), Citrus limon (lemon) and Opuntia vulgaris (prickly pear) against Newcastle disease (ND) in domestic fowl were evaluated. Eighty-eight broiler chickens were divided into five groups. Birds from three groups were inoculated with velogenic ND virus strain, whereas birds from two groups were left as controls. Two groups received a mixture of the plant extract three days prior to inoculation and birds from one group were given the plant extract for two days following development of clinical signs. Blood samples were collected for haemaglutination inhibition tests (HI) for detection of ND virus antibodies. Body weights were monitored during the experiment. Three birds died from the group that was inoculated with ND virus and treated with the plant extract; two died from the group that received the plant extract as a prophylaxis and inoculated with ND virus; and one bird died from the group that was inoculated with ND virus but not given the plant extract. No death was observed in any of the birds in the control groups. Antibody titers for ND virus rose four-fold in the inoculated birds but remained low in the un-inoculated groups. Mean body weights of birds in group B declined markedly compared to the other groups. The results indicated that there was no prophylactic or therapeutic value of the plant extract against ND. The plant extract showed a negative effect on body weights in birds with ND.

Potential spread of highly pathogenic avian influenza H5N1 by wildfowl: dispersal ranges and rates determined from large-scale satellite telemetry

USGS Publications Warehouse

Gaidet, Nicolas; Cappelle, Julien; Takekawa, John Y.; Prosser, Diann J.; Iverson, Samuel A.; Douglas, David C.; Perry, William M.; Mundkur, Taej; Newman, Scott H.

2010-01-01

1. Migratory birds are major candidates for long-distance dispersal of zoonotic pathogens. In recent years, wildfowl have been suspected of contributing to the rapid geographic spread of the highly pathogenic avian influenza (HPAI) H5N1 virus. Experimental infection studies reveal that some wild ducks, geese and swans shed this virus asymptomatically and hence have the potential to spread it as they move. 2. We evaluate the dispersive potential of HPAI H5N1 viruses by wildfowl through an analysis of the movement range and movement rate of birds monitored by satellite telemetry in relation to the apparent asymptomatic infection duration (AID) measured in experimental studies. We analysed the first large-scale data set of wildfowl movements, including 228 birds from 19 species monitored by satellite telemetry in 2006–2009, over HPAI H5N1 affected regions of Asia, Europe and Africa. 3. Our results indicate that individual migratory wildfowl have the potential to disperse HPAI H5N1 over extensive distances, being able to perform movements of up to 2900 km within timeframes compatible with the duration of asymptomatic infection. 4. However, the likelihood of such virus dispersal over long distances by individual wildfowl is low: we estimate that for an individual migratory bird there are, on average, only 5–15 days per year when infection could result in the dispersal of HPAI H5N1 virus over 500 km. 5. Staging at stopover sites during migration is typically longer than the period of infection and viral shedding, preventing birds from dispersing a virus over several consecutive but interrupted long-distance movements. Intercontinental virus dispersion would therefore probably require relay transmission between a series of successively infected migratory birds. 6. Synthesis and applications. Our results provide a detailed quantitative assessment of the dispersive potential of HPAI H5N1 virus by selected migratory birds. Such dispersive potential rests on the assumption that free-living wildfowl will respond analogously to captive, experimentally-infected birds, and that asymptomatic infection will not alter their movement abilities. Our approach of combining experimental exposure data and telemetry information provides an analytical framework for quantifying the risk of spread of avian-borne diseases.

Opening the treasure chest: A DNA-barcoding primer set for most higher taxa of Central European birds and mammals from museum collections

PubMed Central

Schäffer, Sylvia; Zachos, Frank E.

2017-01-01

DNA-barcoding is a rapidly developing method for efficiently identifying samples to species level by means of short standard DNA sequences. However, reliable species assignment requires the availability of a comprehensive DNA barcode reference library, and hence numerous initiatives aim at generating such barcode databases for particular taxa or geographic regions. Historical museum collections represent a potentially invaluable source for the DNA-barcoding of many taxa. This is particularly true for birds and mammals, for which collecting fresh (voucher) material is often very difficult to (nearly) impossible due to the special animal welfare and conservation regulations that apply to vertebrates in general, and birds and mammals in particular. Moreover, even great efforts might not guarantee sufficiently complete sampling of fresh material in a short period of time. DNA extracted from historical samples is usually degraded, such that only short fragments can be amplified, rendering the recovery of the barcoding region as a single fragment impossible. Here, we present a new set of primers that allows the efficient amplification and sequencing of the entire barcoding region in most higher taxa of Central European birds and mammals in six overlapping fragments, thus greatly increasing the value of historical museum collections for generating DNA barcode reference libraries. Applying our new primer set in recently established NGS protocols promises to further increase the efficiency of barcoding old bird and mammal specimens. PMID:28358863

Clinical investigation into feed-related hypervitaminosis D in a captive flock of budgerigars (Melopsittacus undulatus): morbidity, mortalities, and pathologic lesions.

PubMed

Olds, June E; Burrough, Eric; Madison, Darin; Ensley, Steve; Horst, Ronald; Janke, Bruce H; Schwartz, Kent; Stevenson, Gregory W; Gauger, Phillip; Cooper, Vickie L; Arruda, Paulo; Opriessnig, Tanja

2015-03-01

The Blank Park Zoo began suffering mortalities in the spring of 2012 within a flock of 229 captive budgerigars (Melopsittacus undulatus) housed in an interactive public-feeding aviary. Clinical signs in affected birds included weakness, posterior paresis, inability to fly, or acute death. Gross and microscopic lesions were not initially apparent in acutely affected deceased birds. Many birds had evidence of trauma, which is now hypothesized to have been related to the birds' weakness. Investigation into the cause(s) of morbidity and mortality were complicated by the opening of a new interactive enclosure. For this reason, environmental conditions and husbandry protocols were heavily scrutinized. Microscopic examination of dead budgies later in the course of the investigation revealed mineralization of soft tissues consistent with hypervitaminosis D. Pooled serum analysis of deceased birds identified elevated vitamin D3 levels. Vitamin D3 analysis was performed on the feed sticks offered by the public and the formulated maintenance diet fed to the flock. This analysis detected elevated levels of vitamin D3 that were 22.5-times the manufacturer's labeled content in the formulated diet. These findings contributed to a manufacturer recall of more than 100 formulated diets fed to a wide variety of domestic and captive wild animal species throughout the United States and internationally. This case report discusses the complexities of determining the etiology of a toxic event in a zoologic institution.

Opening the treasure chest: A DNA-barcoding primer set for most higher taxa of Central European birds and mammals from museum collections.

PubMed

Schäffer, Sylvia; Zachos, Frank E; Koblmüller, Stephan

2017-01-01

DNA-barcoding is a rapidly developing method for efficiently identifying samples to species level by means of short standard DNA sequences. However, reliable species assignment requires the availability of a comprehensive DNA barcode reference library, and hence numerous initiatives aim at generating such barcode databases for particular taxa or geographic regions. Historical museum collections represent a potentially invaluable source for the DNA-barcoding of many taxa. This is particularly true for birds and mammals, for which collecting fresh (voucher) material is often very difficult to (nearly) impossible due to the special animal welfare and conservation regulations that apply to vertebrates in general, and birds and mammals in particular. Moreover, even great efforts might not guarantee sufficiently complete sampling of fresh material in a short period of time. DNA extracted from historical samples is usually degraded, such that only short fragments can be amplified, rendering the recovery of the barcoding region as a single fragment impossible. Here, we present a new set of primers that allows the efficient amplification and sequencing of the entire barcoding region in most higher taxa of Central European birds and mammals in six overlapping fragments, thus greatly increasing the value of historical museum collections for generating DNA barcode reference libraries. Applying our new primer set in recently established NGS protocols promises to further increase the efficiency of barcoding old bird and mammal specimens.

Evidence of low toxicity of oil sands process-affected water to birds invites re-evaluation of avian protection strategies

PubMed Central

Beck, Elizabeth M.; Smits, Judit E. G.; St Clair, Colleen Cassady

2015-01-01

Exposure to water containing petroleum waste products can generate both overt and subtle toxicological responses in wildlife, including birds. Such exposure can occur in the tailings ponds of the mineable oil sands, which are located in Alberta, Canada, under a major continental flyway for waterfowl. Over the 40 year history of the industry, a few thousand bird deaths have been reported following contact with bitumen on the ponds, but a new monitoring programme demonstrated that many thousands of birds land annually without apparent harm. This new insight creates an urgent need for more information on the sublethal effects on birds from non-bitumen toxicants that occur in the water, including naphthenic acids, polycyclic aromatic hydrocarbons, heavy metals and salts. Ten studies have addressed the effects of oil sands process-affected water (OSPW), and none reported acute or substantial adverse health effects. Interpretive caution is warranted, however, because nine of the studies addressed reclaimed wetlands that received OSPW, not OSPW ponds per se, and differences between experimental and reference sites may have been reduced by shared sources of pollution in the surrounding air and water. Two studies examined eggs of birds nesting >100 km from the mine sites. Only one study exposed birds directly and repeatedly to OSPW and found no consistent differences between treated and control birds in blood-based health metrics. If it is true that aged forms of OSPW do not markedly affect the health of birds that land briefly on the ponds, then the extensiveness of current bird-deterrent programmes is unwarranted and could exert negative net environmental effects. More directed research on bird health is urgently needed, partly because birds that land on these ponds subsequently migrate to destinations throughout North America where they are consumed by both humans and wildlife predators. PMID:27293723

Potential of pest regulation by insectivorous birds in Mediterranean woody crops.

PubMed

Rey Benayas, José M; Meltzer, Jorge; de Las Heras-Bravo, Daniel; Cayuela, Luis

2017-01-01

Regulation of agricultural pests managing their natural enemies represents an alternative to chemical pesticides. We assessed the potential of insectivorous birds as pest regulators in woody crops located in central Spain. A total of 417 nest boxes installed in five field study sites (one vineyard, two fruit orchards, and two olive groves) were monitored for use and breeding of insectivorous birds and other species for four consecutive years (2013-2016). At all field sites except the two olive groves, where birds never occupied the nest boxes, predation experiments were conducted with Greater wax moth (Galleria mellonella) sentinel caterpillars, and food consumption by birds was estimated. Nesting of insectivorous birds, chiefly Great tit (Parus major), and sparrows (Passer domesticus and P. montanus) increased over time, averaging 60% per field site in the vineyard and fruit orchards by the fourth year. Use of nest boxes by sparrows and by Garden dormouse (Eliomys quercinus) was high at the fruit orchards (70%) and the vineyard (30%), respectively. Micro-habitat characteristics (nest box level) and meso-habitat characteristics (patch level) strongly affected use of nest boxes and bird breeding (i.e. number of laid eggs and produced chicks) in different years. Distance to natural or semi-natural vegetation did not consistently affect bird breeding, nor did we see consistent evidence of competition between adjacent breeding birds. Predation rates of sentinel caterpillars were approximately one-third higher near boxes with nesting birds (31.51 ± 43.13%) than at paired distant areas without nest boxes (22.45% ± 38.58%). Food consumption by insectivorous birds per ha and breeding season were conservatively estimated to range from 0.02 kg in one fruit orchard to 0.15 kg in the vineyard. We conclude that installation of nest boxes in Mediterranean woody crops enhances populations of insectivorous birds that regulate pests, but that the effects are moderate and highly context-dependent.

Potential of pest regulation by insectivorous birds in Mediterranean woody crops

PubMed Central

Meltzer, Jorge; de las Heras-Bravo, Daniel; Cayuela, Luis

2017-01-01

Regulation of agricultural pests managing their natural enemies represents an alternative to chemical pesticides. We assessed the potential of insectivorous birds as pest regulators in woody crops located in central Spain. A total of 417 nest boxes installed in five field study sites (one vineyard, two fruit orchards, and two olive groves) were monitored for use and breeding of insectivorous birds and other species for four consecutive years (2013–2016). At all field sites except the two olive groves, where birds never occupied the nest boxes, predation experiments were conducted with Greater wax moth (Galleria mellonella) sentinel caterpillars, and food consumption by birds was estimated. Nesting of insectivorous birds, chiefly Great tit (Parus major), and sparrows (Passer domesticus and P. montanus) increased over time, averaging 60% per field site in the vineyard and fruit orchards by the fourth year. Use of nest boxes by sparrows and by Garden dormouse (Eliomys quercinus) was high at the fruit orchards (70%) and the vineyard (30%), respectively. Micro-habitat characteristics (nest box level) and meso-habitat characteristics (patch level) strongly affected use of nest boxes and bird breeding (i.e. number of laid eggs and produced chicks) in different years. Distance to natural or semi-natural vegetation did not consistently affect bird breeding, nor did we see consistent evidence of competition between adjacent breeding birds. Predation rates of sentinel caterpillars were approximately one-third higher near boxes with nesting birds (31.51 ± 43.13%) than at paired distant areas without nest boxes (22.45% ± 38.58%). Food consumption by insectivorous birds per ha and breeding season were conservatively estimated to range from 0.02 kg in one fruit orchard to 0.15 kg in the vineyard. We conclude that installation of nest boxes in Mediterranean woody crops enhances populations of insectivorous birds that regulate pests, but that the effects are moderate and highly context-dependent. PMID:28877166

Evidence of low toxicity of oil sands process-affected water to birds invites re-evaluation of avian protection strategies.

PubMed

Beck, Elizabeth M; Smits, Judit E G; St Clair, Colleen Cassady

2015-01-01

Exposure to water containing petroleum waste products can generate both overt and subtle toxicological responses in wildlife, including birds. Such exposure can occur in the tailings ponds of the mineable oil sands, which are located in Alberta, Canada, under a major continental flyway for waterfowl. Over the 40 year history of the industry, a few thousand bird deaths have been reported following contact with bitumen on the ponds, but a new monitoring programme demonstrated that many thousands of birds land annually without apparent harm. This new insight creates an urgent need for more information on the sublethal effects on birds from non-bitumen toxicants that occur in the water, including naphthenic acids, polycyclic aromatic hydrocarbons, heavy metals and salts. Ten studies have addressed the effects of oil sands process-affected water (OSPW), and none reported acute or substantial adverse health effects. Interpretive caution is warranted, however, because nine of the studies addressed reclaimed wetlands that received OSPW, not OSPW ponds per se, and differences between experimental and reference sites may have been reduced by shared sources of pollution in the surrounding air and water. Two studies examined eggs of birds nesting >100 km from the mine sites. Only one study exposed birds directly and repeatedly to OSPW and found no consistent differences between treated and control birds in blood-based health metrics. If it is true that aged forms of OSPW do not markedly affect the health of birds that land briefly on the ponds, then the extensiveness of current bird-deterrent programmes is unwarranted and could exert negative net environmental effects. More directed research on bird health is urgently needed, partly because birds that land on these ponds subsequently migrate to destinations throughout North America where they are consumed by both humans and wildlife predators.

Birds of a high-altitude cloud forest in Alta Verapaz, Guatemala.

PubMed

Eisermann, Knut; Schulz, Ulrich

2005-01-01

The Northern Central American Highlands have been recognized as endemic bird area, but little is known about bird communities in Guatemalan cloud forests. From 1997 to 2001 a total of 142 bird species were recorded between 2000 and 2400 masl in cloud forest and agricultural clearings on Montaña Caquipec (Alta Verapaz, Guatemala). The bird community is described based on line transect counts within the forest. Pooling census data from undisturbed and disturbed forest, the Gray-breasted Wood-Wren (Henicorhina leucophrys) was found to be the most abundant species, followed in descending order by the Common Bush-Tanager (Chlorospingus ophthalmicus), the Paltry Tyrannulet (Zimmerius vilissimus), the Yellowish Flycatcher (Empidonax flavescens), the Ruddy-capped Nightingale-Thrush (Catharus frantzi), and the Amethyst-throated Hummingbird (Lampornis amethystinus). Bird communities in undisturbed and disturbed forest were found to be similar (Serensen similarity index 0.85), indicating low human impact. Of all recorded species, approximately 27% were Nearctic-Neotropical migratory birds. The most abundant one was the Wilson's Warbler (Wilsonia pusilla). The Montaña Caquipec is an important area for bird conservation, which is indicated by the presence of four species listed in the IUCN Red List (Highland Guan Penelopina nigra, Resplendent Quetzal Pharomachrus mocinno, Pink-headed Warbler Ergaticus versicolor, Golden-cheeked Warbler Dendroica chrysoparia), and 42 Mesoamerican endemics, of which 14 species are endemic to the Central American Highlands. The results presented here will be useful as baseline data for a long-term monitoring.

A citywide breeding bird survey for Washington, DC

USGS Publications Warehouse

Hadidian, J.; Sauer, J.R.; Swarth, C.; Handly, P.; Droege, S.; Williams, C.; Huff, J.; Didden, G.

1997-01-01

`DC Birdscape' was initiated in 1993 to systematically count the birds occurring throughout Washington D.C. during the breeding season. It involved a coordinated planning effort and partnership between the Audubon Naturalist Society, the National Park Service, and the National Biological Survey, and engaged the participation of more than 100 volunteers. A method for rapidly assessing the status of bird populations over a large area was developed and incorporated into a Geographic Information System to allow a multidimensional analysis of species presence and abundance across a variety of urban land use areas. A total of 91 species were observed, with an estimated total number of 115, making Washington D.C. almost as `bird rich' as nearby suburban counties. Data from the study clearly indicate that avian species are not randomly distributed throughout the Washington D.C. metropolitan area, and show affinity, at least in part, to some of the most broadly recognized land use patterns that are commonly used to zone and classify urban areas under development schemes. This study represents a prototype that will allow efficient and economical monitoring of urban bird populations.

Flight responses by a migratory soaring raptor to changing meteorological conditions.

PubMed

Lanzone, Michael J; Miller, Tricia A; Turk, Philip; Brandes, David; Halverson, Casey; Maisonneuve, Charles; Tremblay, Junior; Cooper, Jeff; O'Malley, Kieran; Brooks, Robert P; Katzner, Todd

2012-10-23

Soaring birds that undertake long-distance migration should develop strategies to minimize the energetic costs of endurance flight. This is relevant because condition upon completion of migration has direct consequences for fecundity, fitness and thus, demography. Therefore, strong evolutionary pressures are expected for energy minimization tactics linked to weather and topography. Importantly, the minute-by-minute mechanisms birds use to subsidize migration in variable weather are largely unknown, in large part because of the technological limitations in studying detailed long-distance bird flight. Here, we show golden eagle (Aquila chrysaetos) migratory response to changing meteorological conditions as monitored by high-resolution telemetry. In contrast to expectations, responses to meteorological variability were stereotyped across the 10 individuals studied. Eagles reacted to increased wind speed by using more orographic lift and less thermal lift. Concomitantly, as use of thermals decreased, variation in flight speed and altitude also decreased. These results demonstrate how soaring migrant birds can minimize energetic expenditures, they show the context for avian decisions and choices of specific instantaneous flight mechanisms and they have important implications for design of bird-friendly wind energy.

The characterization of low pathogenic avian influenza viruses isolated from wild birds in northern Vietnam from 2006 to 2009.

PubMed

Takakuwa, Hiroki; Yamashiro, Tetsu; Le, Mai Q; Phuong, Lien S; Ozaki, Hiroichi; Tsunekuni, Ryota; Usui, Tatsufumi; Ito, Hiroshi; Yamaguchi, Tsuyoshi; Ito, Toshihiro; Murase, Toshiyuki; Ono, Etsuro; Otsuki, Koichi

2013-12-01

Due to concerns that wild birds could possibly spread H5N1 viruses, surveillance was conducted to monitor the types of avian influenza viruses circulating among the wild birds migrating to or inhabiting in northern Vietnam from 2006 to 2009. An H5N2 virus isolated from a Eurasian woodcock had a close phylogenetic relationship to H5 viruses recently isolated in South Korea and Japan, suggesting that H5N2 has been shared between Vietnam, South Korea, and Japan. An H9N2 virus isolated from a Chinese Hwamei was closely related to two H9N2 viruses that were isolated from humans in Hong Kong in 2009, suggesting that an H9N2 strain relevant to the human isolates had been transmitted to and maintained among the wild bird population in Vietnam and South China. The results support the idea that wild bird species play a significant role in the spread and maintenance of avian influenza and that this also occurs in Vietnam. Copyright © 2013 Elsevier Ltd. All rights reserved.

A Survey on West Nile and Usutu Viruses in Horses and Birds in Poland.

PubMed

Bażanów, Barbara; Jansen van Vuren, Petrus; Szymański, Piotr; Stygar, Dominika; Frącka, Agnieszka; Twardoń, Jan; Kozdrowski, Roland; Pawęska, Janusz T

2018-02-17

West Nile virus (WNV) and Usutu virus (USUV) are members of the family Flaviviridae which, natural life cycles involve mosquito-bird-mosquito transmission. Both represent emerging viruses in Europe with potential to cause neuroinvasive disease in humans. This study investigates the seroprevalence of serum neutralizing antibodies to WNV and to USUV in birds and in horses in Poland. Antibodies against WNV and USUV were detected in 5 (35.7%) and in 1 (7.14%) of 14 birds and in 62 (15.08%) and in 115 (27.98%) of 411 horses, respectively. Twenty-one WNV serologically positive horses (33.87%) and 67 USUV serologically positive horses (58.26%) did not travel outside Polish borders. Given the high abundance of potentially competent mosquito species in Poland, high populations of horses and different bird species, our findings highlight implementation of active control programs, including monitoring of geographic spread and dynamics of WNV and USUV transmission in both primary and accidental hosts. It is also important to improve public health awareness about the disease these viruses may cause.

High spatial resolution infrared camera as ISS external experiment

NASA Astrophysics Data System (ADS)

Eckehard, Lorenz; Frerker, Hap; Fitch, Robert Alan

High spatial resolution infrared camera as ISS external experiment for monitoring global climate changes uses ISS internal and external resources (eg. data storage). The optical experiment will consist of an infrared camera for monitoring global climate changes from the ISS. This technology was evaluated by the German small satellite mission BIRD and further developed in different ESA projects. Compared to BIRD the presended instrument uses proven sensor advanced technologies (ISS external) and ISS on board processing and storage capabili-ties (internal). The instrument will be equipped with a serial interfaces for TM/TC and several relay commands for the power supply. For data processing and storage a mass memory is re-quired. The access to actual attitude data is highly desired to produce geo referenced maps-if possible by an on board processing.

Measuring ecological function on California's rangelands

NASA Astrophysics Data System (ADS)

Porzig, E.

2016-12-01

There is a need for a better understanding of ecosystem processes on rangelands and how management decisions influence these processes on scales that are both ecologically and socially relevant. Point Blue Conservation Science's Rangeland Monitoring Network is a coordinated effort to collect standardized data on birds, vegetation, and soils on rangelands throughout California. We work with partners, including private landowners, land trusts, state and federal agencies, and others, to measure bird and plant abundance and diversity and three soil dynamic properties (water infiltration, bulk density, and organic carbon). Here, we present data from our first two years of monitoring on over 50 ranches in 17 counties. By collecting data on the scope and scale of variation in ecological function across rangelands and the relationship with management practices, we aim to advance rangeland management, restoration, and conservation.

A review of protocols for monitoring streams and juvenile fish in forested regions of the Pacific Northwest.

Treesearch

Scott A. Stolnack; Mason D. Bryant; Robert C. Wissmar

2005-01-01

This document reviews existing and proposed protocols used to monitor stream ecosystem conditions and responses to land management activities in the Pacific Northwest. Because of recent work aimed at improving the utility of habitat survey and fish abundance assessment methods, this review focuses on current (since 1993) monitoring efforts that assess stream habitat...

CURRENT STATUS OF THE EPA PROTOCOL GAS PROGRAM

EPA Science Inventory

Accurate compressed gas calibration standards are needed to calibrate continuous emission monitors (CEMs) and ambient air quality monitors that are being used for regulatory purposes. EPA has published a protocol to establish the traceability of these standards to national refer...

Current Status of EPA Verification Program for EPA Protocol Gases

EPA Science Inventory

Accurate compressed gas calibration standards are needed to calibrate continuous emission monitors (CEMs) and ambient air quality monitors that are being used for regulatory purposes. US Environmental Protection Agency (EPA) established its traceability protocol to ensure that c...

EPA Protocol Gas Verification Program - Presented at NIST Gas Panel Meeting

EPA Science Inventory

Accurate compressed gas calibration standards are needed to calibrate continuous emission monitors (CEMs) and ambient air quality monitors that are being used for regulatory purposes. US Environmental Protection Agency (EPA) established its traceability protocol to ensure that c...

Draft Plan to Develop Non-Intrusive Load Monitoring Test Protocols

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayhorn, Ebony T.; Sullivan, Greg P.; Petersen, Joseph M.

2015-09-29

This document presents a Draft Plan proposed to develop a common test protocol that can be used to evaluate the performance requirements of Non-Intrusive Load Monitoring. Development on the test protocol will be focused on providing a consistent method that can be used to quantify and compare the performance characteristics of NILM products. Elements of the protocols include specifications for appliances to be used, metrics, instrumentation, and a procedure to simulate appliance behavior during tests. In addition, three priority use cases for NILM will be identified and their performance requirements will specified.

Year-round monitoring reveals prevalence of fatal bird-window collisions at the Virginia Tech Corporate Research Center

PubMed Central

Barton, Christine M.; Zirkle, Keith W.; Greene, Caitlin F.; Newman, Kara B.

2018-01-01

Collisions with glass are a serious threat to avian life and are estimated to kill hundreds of millions of birds per year in the United States. We monitored 22 buildings at the Virginia Tech Corporate Research Center (VTCRC) in Blacksburg, Virginia, for collision fatalities from October 2013 through May 2015 and explored possible effects exerted by glass area and surrounding land cover on avian mortality. We documented 240 individuals representing 55 identifiable species that died due to collisions with windows at the VTCRC. The relative risk of fatal collisions at all buildings over the study period were estimated using a Bayesian hierarchical zero-inflated Poisson model adjusting for percentage of tree and lawn cover within 50 m of buildings, as well as for glass area. We found significant relationships between fatalities and surrounding lawn area (relative risk: 0.96, 95% credible interval: 0.93, 0.98) as well as glass area on buildings (RR: 1.30, 95% CI [1.05–1.65]). The model also found a moderately significant relationship between fatal collisions and the percent land cover of ornamental trees surrounding buildings (RR = 1.02, 95% CI [1.00–1.05]). Every building surveyed had at least one recorded collision death. Our findings indicate that birds collide with VTCRC windows during the summer breeding season in addition to spring and fall migration. The Ruby-throated Hummingbird (Archilochus colubris) was the most common window collision species and accounted for 10% of deaths. Though research has identified various correlates with fatal bird-window collisions, such studies rarely culminate in mitigation. We hope our study brings attention, and ultimately action, to address this significant threat to birds at the VTCRC and elsewhere. PMID:29637021

Comparative Effectiveness of Two Oil Adjuvant-Inactivated Avian Influenza H9N2 Vaccines.

PubMed

Kilany, Walid H; Bazid, Abdel-Hamid I; Ali, Ahmed; El-Deeb, Ayman H; El-Abideen, Mohamed A Zain; Sayed, Magdy El; El-Kady, Magdy F

2016-05-01

Low pathogenic avian influenza H9N2 virus infection has been an important risk to the Egyptian poultry industry since 2011. Economic losses have occurred from early infection and co-infection with other pathogens. Therefore, H9N2 vaccination of broiler chicks as young as 7 days old was recommended. The current inactivated H9N2 vaccines (0.5 ml/bird) administered at a reduced dose (0.25 ml/bird) do not guarantee the delivery of an effective dose for broilers. In this study, the efficacy of the reduced-dose volume (0.3 ml/bird), compared with the regular vaccine dose (0.5 ml/bird) of inactivated H9N2 vaccines using two different commercially available adjuvants, was investigated. The vaccines were prepared from the local H9N2 virus (Ck/EG/114940v/NLQP/11) using the same antigen content: 300 hemagglutinating units. Postvaccination (PV) immune response was monitored using the hemagglutination inhibition test. At 4 wk PV, both vaccinated groups were challenged using the homologous H9N2 strain at a 50% egg infective dose (EID50) of 10(6) EID50/bird via the intranasal route. Clinical signs, mortality, and virus shedding in oropharyngeal swabs were monitored at 2, 4, 6, and 10 days postchallenge (DPC). The reduced-dose volume of vaccine induced a significantly faster and higher immune response than the regular volume of vaccine at 2 and 3 wk PV. No significant difference in virus shedding between the two vaccine formulas was found (P ≥ 0.05), and both vaccines were able to stop virus shedding by 6 DPC. The reduced-dose volume of vaccine using a suitable oil adjuvant and proper antigen content can be used effectively for early immunization of broiler chicks.

Widespread Usutu virus outbreak in birds in the Netherlands, 2016

PubMed Central

Rijks, JM; Kik, ML; Slaterus, R; Foppen, RPB; Stroo, A; IJzer, J; Stahl, J; Gröne, A; Koopmans, MGP; van der Jeugd, HP; Reusken, CBEM

2016-01-01

We report a widespread Usutu virus outbreak in birds in the Netherlands. Viral presence had been detected through targeted surveillance as early as April 2016 and increased mortality in common blackbirds and captive great grey owls was noticed from August 2016 onwards. Usutu virus infection was confirmed by post-mortem examination and RT-PCR. Extensive Usutu virus activity in the Netherlands in 2016 underlines the need to monitor mosquito activity and mosquito-borne infections in 2017 and beyond. PMID:27918257

Differential recovery of habitat use by birds after wind farm installation: A multi-year comparison

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farfán, M.A., E-mail: mafarfanaguilar@hotmail.com; Departamento de Biología Animal, Facultad de Ciencias, Universidad de Málaga, Campus de Teatinos, 29071, Málaga; Duarte, J., E-mail: jddofitecma@gmail.com

Onshore wind farms remain one of the most widely used technologies for the production of renewable energy. These are known to affect birds through disturbance or collision. Most research focus on the impact of wind farms on raptors or other large bird species, especially those of conservation concern. However, limited information exists on the effect of wind farms on small birds. Recovery of large versus small bird populations impacted by wind farms is also largely unstudied. A reason for this is the lack of long-term datasets based on standardized, systematic assessments. We monitored birds in the vicinity of a windmore » farm in an upland habitat in southern Spain (Malaga province), immediately after installation and 6.5 years post-construction. During both study periods, we observed 11 raptor and 38 non-raptor species (including 30 passerines). We found differences in recovery rates between raptors and non-raptors. Raptors showed an upturn in numbers but non-raptor abundance fell significantly. Greater attention should be paid to the recovery of wildlife after initial impact assessments than at present. This study confirms that regulatory authorities and developers should consider the likely impacts of wind farms on small bird populations. Mitigation measures focused particularly on non-raptor species should be considered and implemented as a means to reduce these negative effects.« less

Signs Indicating Imminent Death in Escherichia coli-Infected Broilers.

PubMed

Matthijs, M G R; Nieuwenhuis, J F; Dwars, R M

2017-09-01

Broilers were observed during 9 days for clinical signs after intratracheal inoculation at 8 days of age with 10 7 E. coli 506. It was determined if these signs were predictive for imminent death. Hourly observations were made daily from a distance of 1-2 m and nightly by camera observation, with respect to the following parameters: level of attention, locomotory activity, posture and appearance, interaction, and impairment of respiration. For deviations of the normal state for these five parameters (i.e., typical clinical signs of disease), scores were defined in up to four classes. The periods of time elapsing from attaining a score for the first time to death were registered per bird for each score for each parameter. Of 114 birds, 85 did not present typical signs of illness as described, and 29 presented the following clinical history: 25 died after presenting signs of illness, 2 died without previous signs, 1 fell ill but survived, and 1 fell ill and recovered. Extended clinical examination was performed in birds presenting clinical signs; temperature, heart rate, respiratory rate, and subcutaneous capillary refill time were measured. The level of attention, and posture and appearance were affected most often in ill birds; 25% of these birds died within 5 and 4 hr, respectively; 50% died within 12 hr; and 75% died within 20 and 19 hr, respectively. Any of these typical signs of illness visible from 1-2 m indicated imminent death, with 75% of the birds dying within 20 hr. Measurements resulting from extended clinical examination proved of lesser predictive value. From these observations, a protocol for intervention to prevent animal suffering may be designed.

Using Autumn Hawk Watch to track raptor migration and to monitor populations of North American birds of prey

Treesearch

Kyle McCarty; Keith L. Bildstein

2005-01-01

Raptors are secretive, area-sensitive predators whose populations can be logistically difficult and financially prohibitive to monitor. Many North American populations of raptors are migratory however, and on migration raptors are frequently counted at traditional migration watchsites. Experiences at Hawk Mountain Sanctuary (HMS) and elsewhere suggest that long-term...

Introduction - regional monitoring programs

Treesearch

Richard L. Hutto; C. John Ralph

2005-01-01

There is increasing interest in the initiation of regional or statewide monitoring programs that are less extensive than national efforts such as the Breeding Bird Survey. A number of regional programs have been in existence for a decade or more, so the papers in this section represented an effort to bring together the collective experience of the people who had...

Comparison of methods for estimating density of forest songbirds from point counts

Treesearch

Jennifer L. Reidy; Frank R. Thompson; J. Wesley. Bailey

2011-01-01

New analytical methods have been promoted for estimating the probability of detection and density of birds from count data but few studies have compared these methods using real data. We compared estimates of detection probability and density from distance and time-removal models and survey protocols based on 5- or 10-min counts and outer radii of 50 or 100 m. We...

Robowell: An automated process for monitoring ground water quality using established sampling protocols

USGS Publications Warehouse

Granato, G.E.; Smith, K.P.

1999-01-01

Robowell is an automated process for monitoring selected ground water quality properties and constituents by pumping a well or multilevel sampler. Robowell was developed and tested to provide a cost-effective monitoring system that meets protocols expected for manual sampling. The process uses commercially available electronics, instrumentation, and hardware, so it can be configured to monitor ground water quality using the equipment, purge protocol, and monitoring well design most appropriate for the monitoring site and the contaminants of interest. A Robowell prototype was installed on a sewage treatment plant infiltration bed that overlies a well-studied unconfined sand and gravel aquifer at the Massachusetts Military Reservation, Cape Cod, Massachusetts, during a time when two distinct plumes of constituents were released. The prototype was operated from May 10 to November 13, 1996, and quality-assurance/quality-control measurements demonstrated that the data obtained by the automated method was equivalent to data obtained by manual sampling methods using the same sampling protocols. Water level, specific conductance, pH, water temperature, dissolved oxygen, and dissolved ammonium were monitored by the prototype as the wells were purged according to U.S Geological Survey (USGS) ground water sampling protocols. Remote access to the data record, via phone modem communications, indicated the arrival of each plume over a few days and the subsequent geochemical reactions over the following weeks. Real-time availability of the monitoring record provided the information needed to initiate manual sampling efforts in response to changes in measured ground water quality, which proved the method and characterized the screened portion of the plume in detail through time. The methods and the case study described are presented to document the process for future use.

TH-E-209-00: Radiation Dose Monitoring and Protocol Management

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

Radiation dose monitoring solutions have opened up new opportunities for medical physicists to be more involved in modern clinical radiology practices. In particular, with the help of comprehensive radiation dose data, data-driven protocol management and informed case follow up are now feasible. Significant challenges remain however and the problems faced by medical physicists are highly heterogeneous. Imaging systems from multiple vendors and a wide range of vintages co-exist in the same department and employ data communication protocols that are not fully standardized or implemented making harmonization complex. Many different solutions for radiation dose monitoring have been implemented by imaging facilitiesmore » over the past few years. Such systems are based on commercial software, home-grown IT solutions, manual PACS data dumping, etc., and diverse pathways can be used to bring the data to impact clinical practice. The speakers will share their experiences with creating or tailoring radiation dose monitoring/management systems and procedures over the past few years, which vary significantly in design and scope. Topics to cover: (1) fluoroscopic dose monitoring and high radiation event handling from a large academic hospital; (2) dose monitoring and protocol optimization in pediatric radiology; and (3) development of a home-grown IT solution and dose data analysis framework. Learning Objectives: Describe the scope and range of radiation dose monitoring and protocol management in a modern radiology practice Review examples of data available from a variety of systems and how it managed and conveyed. Reflect on the role of the physicist in radiation dose awareness.« less

TH-E-209-02: Dose Monitoring and Protocol Optimization: The Pediatric Perspective

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacDougall, R.

Radiation dose monitoring solutions have opened up new opportunities for medical physicists to be more involved in modern clinical radiology practices. In particular, with the help of comprehensive radiation dose data, data-driven protocol management and informed case follow up are now feasible. Significant challenges remain however and the problems faced by medical physicists are highly heterogeneous. Imaging systems from multiple vendors and a wide range of vintages co-exist in the same department and employ data communication protocols that are not fully standardized or implemented making harmonization complex. Many different solutions for radiation dose monitoring have been implemented by imaging facilitiesmore » over the past few years. Such systems are based on commercial software, home-grown IT solutions, manual PACS data dumping, etc., and diverse pathways can be used to bring the data to impact clinical practice. The speakers will share their experiences with creating or tailoring radiation dose monitoring/management systems and procedures over the past few years, which vary significantly in design and scope. Topics to cover: (1) fluoroscopic dose monitoring and high radiation event handling from a large academic hospital; (2) dose monitoring and protocol optimization in pediatric radiology; and (3) development of a home-grown IT solution and dose data analysis framework. Learning Objectives: Describe the scope and range of radiation dose monitoring and protocol management in a modern radiology practice Review examples of data available from a variety of systems and how it managed and conveyed. Reflect on the role of the physicist in radiation dose awareness.« less

Simultaneous validation of the Grandway MD2301 digital automatic blood pressure monitor by the British Hypertension Society and the Association for the Advancement of Medical Instrumentation/the International Organization for Standardization protocols.

PubMed

Huang, Jinhua; Wang, Yun; Liu, Zhaoying; Wang, Yuling

2017-02-01

The aim of this study was to determine the accuracy of the Grandway MD2301 digital automatic blood pressure monitor by the British Hypertension Society (BHS) and the Association for the Advancement of Medical Instrumentation (AAMI)/the International Organization for Standardization (ISO) protocols. A total of 85 participants were included for evaluation based on the requirements of the BHS and the AAMI/ISO protocols. The validation procedure and data analysis followed the protocols precisely. The device achieved A/A grading for the BHS protocol and maintained A/A grading throughout the low, medium and high blood pressure ranges. The device also fulfilled the requirement of the AAMI/ISO protocol with device-observer differences of -0.9±5.6 and 0.8±5.2 mmHg for systolic and diastolic blood pressure, respectively, for criterion 1, and -0.9±4.7 and 0.8±4.2 mmHg, respectively, for criterion 2. The Grandway MD2301 digital automatic blood pressure monitor achieved A/A grade of the BHS protocol and passed the requirements of the AAMI/ISO protocol in adults.

PHENOALP: a new project on phenology in the Western Alps

NASA Astrophysics Data System (ADS)

Cremonese, E.

2009-04-01

PHENOALP is a new EU co-funded Interreg Project under the operational programme for cross-border cooperation "Italy-France (Alps-ALCOTRA)" 2007 - 2013, aiming to get a better understanding of phenological changes in the Alps. The major goals of the project are: 1- The implementation of an observation network in the involved territories (i.e. the Aosta Valley and the Savoies in the Western Alps); 2- The definition of a common observation strategy and common protocols; 3- The involvement of local community members (e.g. through schools) in the observation activities as a way to increase the awareness on the issue of the effects of climate change. Project leader is the Environmental Protection Agency of Aosta Valley (ARPA Valle d'Aosta - IT) and the partners are the Research Center on High Altitude Ecosystem (CREA - FR), Mont Avic Regional Parc (IT), Bauges Massif Regional Natural Parc (FR) and the Protected Area Service of Aosta Valley (IT). Project activities are: 1. Pheno-plantes: definition of common observation protocols (e.g. field observation and webcams) of different alpine species (trees and herbaceous) and implementation of the observation network; analysis of the relations between climate and phenological events; application and evaluation of phenological models. 2. Pheno-detection: remote sensing of European larch and high elevation pastures with MODIS data; multitemporal analysis (2000-2011) of phenological variations in the Western Alps. 3. Pheno-flux: analysis of the relation between the seasonal and interannual variability of plant phenology and productivity, assessed measuring CO2 fluxes (eddy-covariance technique), radiometric indexes and phenological events at specific (European larch stand and alpine pastures) monitoring site. 4. Pheno-zoo: definition of common observation protocols for the phenology of animal taxa (birds, mammals, amphibians and insects) along altitudinal gradients; implementation of the observation network. 5. Inter-pheno: integrated analysis of the relationships between plants and animals phenology and their relation with climatic and other environmental conditions. 6. Meteo-reseau: implementation of a monitoring network of temperature data in the sites where phenological observations are done. 7. Pheno-form: involvement of community members (e.g. schools, naturalistic guides, ...) in the observations and diffusion of results. During the conference, details on project structures, methodology and expected outcomes will be exposed and discussed.

Sedative Effects of Intranasal Midazolam Administration in Wild Caught Blue-fronted Amazon (Amazona aestiva) and Orange-winged Amazon (Amazona amazonica) Parrots.

PubMed

Schaffer, Débora P H; de Araújo, Nayone L L C; Raposo, Ana Cláudia S; Filho, Emanoel F Martins; Vieira, João Victor R; Oriá, Arianne P

2017-09-01

Safe and effective sedation protocols are important for chemical restraint of birds in clinical and diagnostic procedures, such as clinical evaluations, radiographic positioning, and blood collection. These protocols may reduce stress and ease the management of wild-caught birds, which are susceptible to injury or death when exposed to stressful situations. We compare the sedative effect of intranasal midazolam in wild-caught blue-fronted (Amazona aestiva) and orange-winged (Amazona amazonica) Amazon parrots. Ten adult parrots of each species (n = 20), of unknown sex, weighing 0.337 ± 0.04 (blue-fronted) and 0.390 ± 0.03 kg (orange-winged), kg were used. Midazolam (2 mg/kg) was administered intranasally and the total volume of the drug was divided equally between the 2 nostrils. Onset time and total sedation time were assessed. Satisfactory sedation for clinical evaluation was induced in all birds. Onset time and total sedation times were similar in both species: 5.36 ± 1.16 and 25.40 ± 5.72 minutes, respectively, for blue-fronted Amazons and 5.09 ± 0.89 and 27.10 ± 3.73 minutes, respectively, for orange-winged Amazons. A total of 15 animals showed absence of vocalization, with moderate muscle relaxation and wing movement upon handling, and 2 animals presented with lateral recumbence, with intense muscle relaxation and no wing movement, requiring no restraint. Three blue-fronted Amazons had no effective sedation. Intranasally administered midazolam at a dose of 2 mg/kg effectively promoted sedative effects with a short latency time and fast recovery in wild-caught parrots.

Mercury Assessment and Monitoring Protocol for the Bear Creek Watershed, Colusa County, California

USGS Publications Warehouse

Suchanek, Thomas H.; Hothem, Roger L.; Rytuba, James J.; Yee, Julie L.

2010-01-01

This report summarizes the known information on the occurrence and distribution of mercury (Hg) in physical/chemical and biological matrices within the Bear Creek watershed. Based on these data, a matrix-specific monitoring protocol for the evaluation of the effectiveness of activities designed to remediate Hg contamination in the Bear Creek watershed is presented. The monitoring protocol documents procedures for collecting and processing water, sediment, and biota for estimation of total Hg (TotHg) and monomethyl mercury (MMeHg) in the Bear Creek watershed. The concurrent sampling of TotHg and MMeHg in biota as well as water and sediment from 10 monitoring sites is designed to assess the relative bioavailability of Hg released from Hg sources in the watershed and identify environments conducive to Hg methylation. These protocols are designed to assist landowners, land managers, water quality regulators, and scientists in determining whether specific restoration/mitigation actions lead to significant progress toward achieving water quality goals to reduce Hg in Bear and Sulphur Creeks.

Survival and physiologic response of common Amakihi and Japanese white-eyes during simulated translocation

USGS Publications Warehouse

Work, Thierry M.; Massey, J. Gregory; Johnson, Luanne; Dougill, Steve; Banko, Paul C.

1999-01-01

We evaluated the effects of three translocation trials on Common Amakihi (Hemignathus virens) and Japanese White-eyes (Zosterops japonicus). Trial 1 involved capturing birds, transporting them on rough roads for 4 hr followed by holding in an aviary for 48 hr without overnight thermal support prior to release. Trial 2 involved capture, then holding in an aviary for 48 hr with overnight thermal support followed by transport for 4 hr prior to release. Trial 3 and 1 were identical except that overnight thermal support was provided during trial 3. We monitored survival, food consumption, weight change, and fecal production during captivity as well as changes in hematocrit, estimated total solids, heterophil to lymphocyte ratios, plasma uric acid, and creatinine phosphokinase (CPK) at capture and release. Survival was significantly lower for Amakihi during trial 1 (no thermal support). Birds that died lost significantly more weight than those that survived. Regardless of trial, birds responded to translocation by a combination of weight loss, anemia, hypoproteinemia, and elevated heterophil to lymphocyte ratio, uric acid, and CPK levels. The first 24 hr of captivity posed the greatest risk to birds regardless of whether transport or holding occurred first. Food consumption, fecal production, and weight all decreased at night, and overnight thermal support during holding was critical if ambient temperatures dipped to freezing. We recommend that if small passerines are to be held for > 12 hr, they be monitored individually for weight loss, food consumption, and fecal production.

Summer behavior of immature radio-equipped woodcock in central Maine

USGS Publications Warehouse

Dunford, R.D.; Owen, R.B.

1973-01-01

The behavior of 15 immature American woodcock (Philohela minor) was studied in central Maine during the summers of 1969 and 1970 using radiotelemetry. The monitored birds used a variety of nocturnal sites including old fields, bogs, powerlines, highway medians, woods roads, and fore clearings. Old fields were occupied more often than any other type of opening. Second growth-hardwoods, alders, hardwood-conifers, and conifers were utilized as diurnal cover. Diurnal locations of radio-equipped woodcock averaged 15 m from major breaks in the forest canopy. Four birds were monitored continuously during the day and night to detennine periods of activity. Although the birds were active throughout the day, very little activity was recorded after they moved to nocturnal sites. No apparent difference was found in the daily patterns of movement between immature male and female woodcock. Crepuscular movements between diurnal covers and nocturnal areas averaged 332 m. A composite summer range for the 15 woodcock during 183 woodcock-days was 1060 hectares. The data suggest that immature woodcock are quite mobile during the summer and utilize most of the forest openings occurring within 1-3 km of good nesting habitat. Most of these openings are also used for singing grounds by males in the spring.

Response of breeding birds to aerial sprays of trichlorfon (Dylox) and carbaryl (Sevin-4-Oil) in Montana forests

USGS Publications Warehouse

DeWeese, L.R.; Henny, C.J.; Floyd, R.L.; Bobal, K.A.; Schultz, A.W.

1979-01-01

Breeding density, food, nesting success, and mortality of 20 bird species were monitored at Beaverhead National Forest, Montana, in 1975 in conjunction with experimental applications of trichlorfon (Dylox) and carbaryl (Sevin-4-oil) to western budworms (Choristoneura occidentalis). Bird species on nine 350- to 550-ha forested plots (three controls and three treated with each pesticide) were studied before and for 14 days after the spraying of trichlorfon at 1.1 kg in?9.4 L of Panasol AN3 per ha (1 pound active ingredient in 1.0 gallon/acre) and of carbaryl at 1.1 kg in 4.7 L of diesel oil per ha (l pound active ingredient in 0.5 gallon/acre). No significant decrease in bird numbers was detected from breeding-pair estimates or live bird counts after the spraying. Of the breeding pairs present before spraying, 92% remained on control plots, 89% on trichlorfon plots, and 92% on carbaryl plots. Counts of live birds made before and after spraying in three types of habitat supported the. results of the breeding-pair estimates. Nests with eggs or with young at the time of spraying were 74 and 97% successful, respectively, in control plots, 83 and 100% in plots sprayed with trichlorfon, and 86 and 100% in plots sprayed with carbaryl. No sick or dead birds were found after the spraying, although budworms were found in bird stomachs, and tracer-dye from the pesticide occurred on the feathers or feet of 74% of the 202 birds collected. Species dwelling in the tree canopy encountered the dye (and thus the pesticide) at a slightly higher rate (80%) than did species below the treetops (71 %) or near the ground and in open areas (70%).

Riparian bird density decline in response to biocontrol of Tamarix from riparian ecosystems along the Dolores River in SW Colorado, USA

USGS Publications Warehouse

Darrah, Abigail J.; van Riper, Charles

2018-01-01

Biocontrol of invasive tamarisk (Tamarix spp.) in the arid Southwest using the introduced tamarisk beetle (Diorhabda elongata) has been hypothesized to negatively affect some breeding bird species, but no studies to date have documented the effects of beetle-induced defoliation on riparian bird abundance. We assessed the effects of tamarisk defoliation by monitoring defoliation rates, changes in vegetation composition, and changes in density of six obligate riparian breeding bird species at two sites along the Dolores River in Colorado following the arrival of tamarisk beetles. We conducted bird point counts from 2010 to 2014 and modeled bird density as a function of native vegetation density and extent of defoliation using hierarchical distance sampling. Maximum annual defoliation decreased throughout the study period, peaking at 32–37% in 2009–2010 and dropping to 0.5–15% from 2011–2014. Stem density of both tamarisk and native plants declined throughout the study period until 2014. Density of all bird species declined throughout most of the study, with Song Sparrow disappearing from the study sites after 2011. Blue Grosbeak, Yellow-breasted Chat, and Yellow Warbler densities were negatively related to defoliation in the previous year, while Lazuli Bunting exhibited a positive relationship with defoliation. These findings corroborate earlier predictions of species expected to be sensitive to defoliation as a result of nest site selection. Tamarisk defoliation thus had short-term negative impacts on riparian bird species; active restoration may be needed to encourage the regrowth of native riparian vegetation, which in the longer-term may result in increased riparian bird density.

Indicators and protocols for monitoring impacts of formal and informal trails in protected areas

USGS Publications Warehouse

Marion, Jeffrey L.; Leung, Yu-Fai

2011-01-01

Trails are a common recreation infrastructure in protected areas and their conditions affect the quality of natural resources and visitor experiences. Various trail impact indicators and assessment protocols have been developed in support of monitoring programs, which are often used for management decision-making or as part of visitor capacity management frameworks. This paper reviews common indicators and assessment protocols for three types of trails, surfaced formal trails, unsurfaced formal trails, and informal (visitor-created) trails. Monitoring methods and selected data from three U.S. National Park Service units are presented to illustrate some common trail impact indicators and assessment options.

SRAG Measurements Performed During the Orion EFT-1 Mission

NASA Technical Reports Server (NTRS)

Gaza, Ramona

2015-01-01

The Exploration Flight Test 1 (EFT-1) was the first flight of the Orion Multi-Purpose Crew Vehicle (MPCV). The flight was launched on December 5, 2014, by a Delta IV Heavy rocket and lasted 4.5 hours. The EFT-1 trajectory involved one low altitude orbit and one high altitude orbit with an apogee of almost 6000 km. As a result of this particular flight profile, the Orion MPCV passed through intense regions of trapped protons and electron belts. In support of the radiation measurements aboard the EFT-1, the Space Radiation Analysis Group (SRAG) provided a Battery-operated Independent Radiation Detector (BIRD) based on Timepix radiation monitoring technology similar to that employed by the ISS Radiation Environmental Monitors (REM). In addition, SRAG provided a suite of optically and thermally stimulated luminescence detectors, with 2 Radiation Area Monitor (RAM) units collocated with the BIRD instrument for comparison purposes, and 6 RAM units distributed at different shielding configurations within the Orion MPCV. A summary of the EFT-1 Radiation Area Monitors (RAM) mission dose results obtained from measurements performed in the Space Radiation Dosimetry Laboratory at the NASA Johnson Space Center will be presented. Each RAM included LiF:Mg,Ti (TLD-100), (6)LiF:Mg,Ti (TLD-600), (7)LiF:Mg,Ti (TLD-700), Al2O3:C (Luxel trademark), and CaF2:Tm (TLD-300). The RAM mission dose values will be compared with the BIRD instrument total mission dose. In addition, a similar comparison will be shown for the ISS environment by comparing the ISS RAM data with data from the six Timepix-based REM units deployed on ISS as part of the NASA REM Technology Demonstration.

Remote Sensing and the Kyoto Protocol: A Review of Available and Future Technology for Monitoring Treaty Compliance

NASA Technical Reports Server (NTRS)

Imhoff, Marc L.; Rosenquist, A.; Milne, A. K.; Dobson, M. C.; Qi, J.

2000-01-01

An International workshop was held to address how remote sensing technology could be used to support the environmental monitoring requirements of the Kyoto Protocol. An overview of the issues addressed and the findings of the workshop are discussed.

Lightweight UDP Pervasive Protocol in Smart Home Environment Based on Labview

NASA Astrophysics Data System (ADS)

Kurniawan, Wijaya; Hannats Hanafi Ichsan, Mochammad; Rizqika Akbar, Sabriansyah; Arwani, Issa

2017-04-01

TCP (Transmission Control Protocol) technology in a reliable environment was not a problem, but not in an environment where the entire Smart Home network connected locally. Currently employing pervasive protocols using TCP technology, when data transmission is sent, it would be slower because they have to perform handshaking process in advance and could not broadcast the data. On smart home environment, it does not need large size and complex data transmission between monitoring site and monitoring center required in Smart home strain monitoring system. UDP (User Datagram Protocol) technology is quick and simple on data transmission process. UDP can broadcast messages because the UDP did not require handshaking and with more efficient memory usage. LabVIEW is a programming language software for processing and visualization of data in the field of data acquisition. This paper proposes to examine Pervasive UDP protocol implementations in smart home environment based on LabVIEW. UDP coded in LabVIEW and experiments were performed on a PC and can work properly.

Ultra Low Power Signal Oriented Approach for Wireless Health Monitoring

PubMed Central

Marinkovic, Stevan; Popovici, Emanuel

2012-01-01

In recent years there is growing pressure on the medical sector to reduce costs while maintaining or even improving the quality of care. A potential solution to this problem is real time and/or remote patient monitoring by using mobile devices. To achieve this, medical sensors with wireless communication, computational and energy harvesting capabilities are networked on, or in, the human body forming what is commonly called a Wireless Body Area Network (WBAN). We present the implementation of a novel Wake Up Receiver (WUR) in the context of standardised wireless protocols, in a signal-oriented WBAN environment and present a novel protocol intended for wireless health monitoring (WhMAC). WhMAC is a TDMA-based protocol with very low power consumption. It utilises WBAN-specific features and a novel ultra low power wake up receiver technology, to achieve flexible and at the same time very low power wireless data transfer of physiological signals. As the main application is in the medical domain, or personal health monitoring, the protocol caters for different types of medical sensors. We define four sensor modes, in which the sensors can transmit data, depending on the sensor type and emergency level. A full power dissipation model is provided for the protocol, with individual hardware and application parameters. Finally, an example application shows the reduction in the power consumption for different data monitoring scenarios. PMID:22969379

Ultra low power signal oriented approach for wireless health monitoring.

PubMed

Marinkovic, Stevan; Popovici, Emanuel

2012-01-01

In recent years there is growing pressure on the medical sector to reduce costs while maintaining or even improving the quality of care. A potential solution to this problem is real time and/or remote patient monitoring by using mobile devices. To achieve this, medical sensors with wireless communication, computational and energy harvesting capabilities are networked on, or in, the human body forming what is commonly called a Wireless Body Area Network (WBAN). We present the implementation of a novel Wake Up Receiver (WUR) in the context of standardised wireless protocols, in a signal-oriented WBAN environment and present a novel protocol intended for wireless health monitoring (WhMAC). WhMAC is a TDMA-based protocol with very low power consumption. It utilises WBAN-specific features and a novel ultra low power wake up receiver technology, to achieve flexible and at the same time very low power wireless data transfer of physiological signals. As the main application is in the medical domain, or personal health monitoring, the protocol caters for different types of medical sensors. We define four sensor modes, in which the sensors can transmit data, depending on the sensor type and emergency level. A full power dissipation model is provided for the protocol, with individual hardware and application parameters. Finally, an example application shows the reduction in the power consumption for different data monitoring scenarios.

Do birds sleep in flight?

NASA Astrophysics Data System (ADS)

Rattenborg, Niels C.

2006-09-01

The following review examines the evidence for sleep in flying birds. The daily need to sleep in most animals has led to the common belief that birds, such as the common swift ( Apus apus), which spend the night on the wing, sleep in flight. The electroencephalogram (EEG) recordings required to detect sleep in flight have not been performed, however, rendering the evidence for sleep in flight circumstantial. The neurophysiology of sleep and flight suggests that some types of sleep might be compatible with flight. As in mammals, birds exhibit two types of sleep, slow-wave sleep (SWS) and rapid eye-movement (REM) sleep. Whereas, SWS can occur in one or both brain hemispheres at a time, REM sleep only occurs bihemispherically. During unihemispheric SWS, the eye connected to the awake hemisphere remains open, a state that may allow birds to visually navigate during sleep in flight. Bihemispheric SWS may also be possible during flight when constant visual monitoring of the environment is unnecessary. Nevertheless, the reduction in muscle tone that usually accompanies REM sleep makes it unlikely that birds enter this state in flight. Upon landing, birds may need to recover the components of sleep that are incompatible with flight. Periods of undisturbed postflight recovery sleep may be essential for maintaining adaptive brain function during wakefulness. The recent miniaturization of EEG recording devices now makes it possible to measure brain activity in flight. Determining if and how birds sleep in flight will contribute to our understanding of a largely unexplored aspect of avian behavior and may also provide insight into the function of sleep.

Survival estimates of wild and captive-bred released Puaiohi, an endangered Hawaiian thrush

USGS Publications Warehouse

VanderWerf, Eric; Crampton, Lisa H.; Diegmann, Julia; Atkinson, Carter T.; Leonard, David L.

2014-01-01

Estimating and monitoring adult and juvenile survival are vital to understanding population status, informing recovery planning for endangered species, and quantifying the success of management. We used mark–recapture models to estimate apparent annual survival of the Puaiohi (Myadestes palmeri), an endangered thrush endemic to the Hawaiian island of Kauai, from 2005 to 2011. Our sample included 87 wild birds and 123 captive-bred birds that were released at various ages. Survival was higher for wild adult males (0.71 ± 0.09) than for wild adult females (0.46 ± 0.12). Survival of wild juveniles (0.23 ± 0.06) was lower than that of wild adults of both sexes, indicating that recruitment may limit population growth. Captive-bred birds released when <1 yr old had survival (0.26 ± 0.21) comparable with that of wild juveniles, but captive-bred birds released at 1–3 yr old had very low survival (0.05 ± 0.06). Only 8 of 123 (7%) captive birds were seen again after release. Two wild birds resighted five years after marking are the oldest known individuals, being at least six years of age. Malarial infection did not affect survival of wild Puaiohi, unlike many Hawaiian forest birds. The difference between adult male and adult female survival is consistent with rat (Rattusspp.) predation of females on the nest as a major source of mortality. As such, attempting to reduce nest predation by controlling rats may be the best available management option. Releasing captive-bred birds has had little effect on the wild population in recent years.

Integrated natural resource monitoring on Army lands and its application to conservation of neotropical birds

Treesearch

Timothy J. Hayden; David J. Tazik

1993-01-01

The U.S. Army is responsible for managing 5.0 million ha (12.4 million acres) of land on 186 major installations world-wide. The Land Condition Trend Analysis (LCTA) Program is the Army's integrated monitoring and data collection program designed to fulfill the Army's natural resource information and management needs. implementation of this program was...

Monitoring Boreal Forest Owls in Ontario using tape playback surveys with volunteers

Treesearch

Charles M. Francis; Michael S. W. Bradstreet

1997-01-01

Long Point Bird Observatory ran pilot surveys in 1995 and 1996 to monitor boreal forest owls in Ontario using roadside surveys with tape playback of calls. A minimum of 791 owls on 84 routes in 1995, and 392 owls on 88 routes in 1996; nine different species were detected. Playback improved the response rate for Barred (Strix varia), Boreal (...

Counting migrants to monitor bird populations: state of the art

Treesearch

Erica H. Dunn

2005-01-01

The aim of this paper is to summarize background information on what migration monitoring is, what biases are present and how they can be addressed, evidence that resulting trends are biologically meaningful, and what the benefits and limitations of the method are. Some topics have been covered elsewhere in greater detail (Dunn and Hussell 1995, Dunn et al. 1997,...

Improving metabolic monitoring in patients maintained on antipsychotics in Penang, Malaysia.

PubMed

Hor, Esther Sl; Subramaniam, Sivasangari; Koay, Jun Min; Bharathy, Arokiamary; Vasudevan, Umadevi; Panickulam, Joseph J; Ng, InnTiong; Arif, Nor Hayati; Russell, Vincent

2016-02-01

To evaluate the monitoring of metabolic parameters among outpatients maintained on antipsychotic medications in a general hospital setting in Malaysia and to assess the impact of a local monitoring protocol. By performing a baseline audit of files from a random sample of 300 patients prescribed antipsychotic medications for at least 1 year; we determined the frequency of metabolic monitoring. The findings informed the design of a new local protocol, on which clinical staff was briefed. We re-evaluated metabolic monitoring immediately after implementation, in a small sample of new referrals and current patients. We explored staff perceptions of the initiative with a follow-up focus group, 6 months post-implementation. The baseline audit revealed a sub-optimal frequency of metabolic parameter recording. Re-audit, following implementation of the new protocol, revealed improved monitoring but persisting deficits. Dialogue with the clinical staff led to further protocol modification, clearer definition of staff roles and use of a standard recording template. Focus group findings revealed positive perceptions of the initiative, but persisting implementation barriers, including cultural issues surrounding waist circumference measurement. Responding to challenges in achieving improved routine metabolic monitoring of patients maintained on antipsychotics required on-going dialogue with the clinical staff, in order to address both service pressures and cultural concerns. © The Royal Australian and New Zealand College of Psychiatrists 2015.

Husbandry of wild-caught song sparrows (Melospiza melodia).

PubMed

Smith, Lori; Hallager, Sara; Kendrick, Erin; Hope, Katharine; Danner, Raymond M

2018-05-08

Conservation and research efforts occasionally rely upon bringing wild animals into human care to establish breeding programs and to understand their biology. Wild-caught birds may have husbandry requirements that differ from captive-reared animals due, in part, to their social development in the wild and potential exposure to novel pathogens. We developed husbandry techniques to minimize stress and monitor health in a population of wild-caught song sparrows (Melospiza melodia). We describe enclosure conditions, diet and enrichment, and best practices for stress reduction. In addition, we describe several health monitoring strategies, including assessing feces quality, body condition scores, and specific signs of infection. These techniques led to successful housing of song sparrows during formal behavioral and developmental studies. This information will be useful for guiding the husbandry of wild-caught passerine birds in the future. © 2018 Wiley Periodicals, Inc.

Long-distance translocations to create a second millerbird population and reduce extinction risk

USGS Publications Warehouse

Holly Freifeld,; Sheldon Plentovich,; Chris Farmer,; Charles Kohley,; Peter Luscomb,; Work, Thierry M.; Daniel Tsukayama,; George Wallace,; Mark MacDonald,; Sheila Conant,

2016-01-01

Translocation is a conservation tool used with increasing frequency to create additional populations of threatened species. In addition to following established general guidelines for translocations, detailed planning to account for unique circumstances and intensive post-release monitoring to document outcomes and guide management are essential components of these projects. Recent translocation of the critically endangered Nihoa millerbird (Acrocephalus familiaris kingi) provides an example of this planning and monitoring. The Nihoa millerbird is a passerine bird endemic to Nihoa Island in the remote Northwestern Hawaiian Islands. The closely related, ecologically similar Laysan millerbird (Acrocephalus familiaris familiaris) went extinct on Laysan Island in the early 20th century when the island was denuded by introduced rabbits. To reduce extinction risk, we translocated 50 adult Nihoa millerbirds more than 1000 km by sea to Laysan, which has recovered substantially in the past century and has ample habitat and a rich prey-base for millerbirds. Following five years of intensive background research and planning, including development of husbandry techniques, fundraising, and regulatory compliance, translocations occurred in 2011 and 2012. Of 11 females in each cohort, 8 (2011 cohort) and 11 (2012 cohort) produced at least one brood of fledglings during their first year on Laysan. At the conclusion of monitoring in September 2014, 37 of the translocated birds were known to survive, and the population was estimated at 164 birds. The reintroduction of millerbirds to Laysan represents a milestone in the island's ongoing restoration.

A cooled CCD camera-based protocol provides an effective solution for in vitro monitoring of luciferase.

PubMed

Afshari, Amirali; Uhde-Stone, Claudia; Lu, Biao

2015-03-13

Luciferase assay has become an increasingly important technique to monitor a wide range of biological processes. However, the mainstay protocols require a luminometer to acquire and process the data, therefore limiting its application to specialized research labs. To overcome this limitation, we have developed an alternative protocol that utilizes a commonly available cooled charge-coupled device (CCCD), instead of a luminometer for data acquiring and processing. By measuring activities of different luciferases, we characterized their substrate specificity, assay linearity, signal-to-noise levels, and fold-changes via CCCD. Next, we defined the assay parameters that are critical for appropriate use of CCCD for different luciferases. To demonstrate the usefulness in cultured mammalian cells, we conducted a case study to examine NFκB gene activation in response to inflammatory signals in human embryonic kidney cells (HEK293 cells). We found that data collected by CCCD camera was equivalent to those acquired by luminometer, thus validating the assay protocol. In comparison, The CCCD-based protocol is readily amenable to live-cell and high-throughput applications, offering fast simultaneous data acquisition and visual and quantitative data presentation. In conclusion, the CCCD-based protocol provides a useful alternative for monitoring luciferase reporters. The wide availability of CCCD will enable more researchers to use luciferases to monitor and quantify biological processes. Copyright © 2015 Elsevier Inc. All rights reserved.

Estuarine water quality in parks of the Northeast Coastal and Barrier Network: Development and early implementation of vital signs estuarine nutrient-enrichment monitoring, 2003-06

USGS Publications Warehouse

Kopp, Blaine S.; Nielsen, Martha; Glisic, Dejan; Neckles, Hilary A.

2009-01-01

This report documents results of pilot tests of a protocol for monitoring estuarine nutrient enrichment for the Vital Signs Monitoring Program of the National Park Service Northeast Coastal and Barrier Network. Data collected from four parks during protocol development in 2003-06 are presented: Gateway National Recreation Area, Colonial National Historic Park, Fire Island National Seashore, and Assateague Island National Seashore. The monitoring approach incorporates several spatial and temporal designs to address questions at a hierarchy of scales. Indicators of estuarine response to nutrient enrichment were sampled using a probability design within park estuaries during a late-summer index period. Monitoring variables consisted of dissolved-oxygen concentration, chlorophyll a concentration, water temperature, salinity, attenuation of downwelling photosynthetically available radiation (PAR), and turbidity. The statistical sampling design allowed the condition of unsampled locations to be inferred from the distribution of data from a set of randomly positioned "probability" stations. A subset of sampling stations was sampled repeatedly during the index period, and stations were not rerandomized in subsequent years. These "trend stations" allowed us to examine temporal variability within the index period, and to improve the sensitivity of the monitoring protocol to detecting change through time. Additionally, one index site in each park was equipped for continuous monitoring throughout the index period. Thus, the protocol includes elements of probabilistic and targeted spatial sampling, and the temporal intensity ranges from snapshot assessments to continuous monitoring.

Building Capacity for a Long-Term, in-Situ, National-Scale Phenology Monitoring Network: Successes, Challenges and Lessons Learned

NASA Astrophysics Data System (ADS)

Weltzin, J. F.; Browning, D. M.

2014-12-01

The USA National Phenology Network (USA-NPN; www.usanpn.org) is a national-scale science and monitoring initiative focused on phenology - the study of seasonal life-cycle events such as leafing, flowering, reproduction, and migration - as a tool to understand the response of biodiversity to environmental variation and change. USA-NPN provides a hierarchical, national monitoring framework that enables other organizations to leverage the capacity of the Network for their own applications - minimizing investment and duplication of effort - while promoting interoperability. Network participants can leverage: (1) Standardized monitoring protocols that have been broadly vetted, tested and published; (2) A centralized National Phenology Database (NPDb) for maintaining, archiving and replicating data, with standard metadata, terms-of-use, web-services, and documentation of QA/QC, plus tools for discovery, visualization and download of raw data and derived data products; and/or (3) A national in-situ, multi-taxa phenological monitoring system, Nature's Notebook, which enables participants to observe and record phenology of plants and animals - based on the protocols and information management system (IMS) described above - via either web or mobile applications. The protocols, NPDb and IMS, and Nature's Notebook represent a hierarchy of opportunities for involvement by a broad range of interested stakeholders, from individuals to agencies. For example, some organizations have adopted (e.g., the National Ecological Observatory Network or NEON) -- or are considering adopting (e.g., the Long-Term Agroecosystems Network or LTAR) -- the USA-NPN standardized protocols, but will develop their own database and IMS with web services to promote sharing of data with the NPDb. Other organizations (e.g., the Inventory and Monitoring Programs of the National Wildlife Refuge System and the National Park Service) have elected to use Nature's Notebook to support their phenological monitoring programs. We highlight the challenges and benefits of integrating phenology monitoring within existing and emerging national monitoring networks, and showcase opportunities that exist when standardized protocols are adopted and implemented to promote data interoperability and sharing.

Plastic ingestion in aquatic-associated bird species in southern Portugal.

PubMed

Nicastro, Katy R; Lo Savio, Roberto; McQuaid, Christopher D; Madeira, Pedro; Valbusa, Ugo; Azevedo, Fábia; Casero, Maria; Lourenço, Carla; Zardi, Gerardo I

2018-01-01

Excessive use of plastics in daily life and the inappropriate disposal of plastic products are severely affecting wildlife species in both coastal and aquatic environments. Birds are top-predators, exposed to all threats affecting their environments, making them ideal sentinel organisms for monitoring ecosystems change. We set a baseline assessment of the prevalence of marine plastic litter affecting multi-species populations of aquatic birds in southern Portugal. By examining 160 stomach contents from 8 species of aquatic birds, we show that 22.5% were affected by plastic debris. Plastic was found in Ciconia ciconia, Larus fuscus and L. michahellis. Ciconia ciconia ingested the highest amount (number of items and total mass) of plastic debris. Polydimethylsiloxane (PDMS, silicones) was the most abundant polymer and was recorded only in C. ciconia. Plastic ingestion baseline data are of crucial importance to evaluate changes through time and among regions and to define management and conservation strategies. Copyright © 2017 Elsevier Ltd. All rights reserved.

Nest success of grassland birds in oak barrens and dry prairies in west central Wisconsin

USGS Publications Warehouse

Susan M. Vos,; Ribic, Christine

2013-01-01

We investigated nesting success of grassland birds on dry prairie and oak barrens patches embedded within a forested matrix on Fort McCoy Military Installation. We monitored 280 nests of 9 grassland-bird species from mid-May to late July 2000–2002. Pooecetes gramineus (Vesper Sparrow) andAmmodramus savannarum (Grasshopper Sparrow) were the most abundant nesting species. Vesper Sparrow nest densities were highest on smaller grassland patches, while Grasshopper Sparrow nest densities were highest on the largest patches. Probability of fledging at least one young was 0.20 for Vesper Sparrow. For Grasshopper Sparrow, daily nest survival was higher for nests placed away from trees; probability of fledging at least one young was 0.28 for nests away from trees and 0.05 for nests near trees. Maintaining remnant native habitats is important, and management of woody features may help improve habitat quality for some grassland birds in Wisconsin.

Changes in mercury exposure of marine birds breeding in the Gulf of Maine, 2008-2013.

PubMed

Stenhouse, Iain J; Adams, Evan M; Goyette, Jennifer L; Regan, Kevin J; Goodale, M Wing; Evers, David C

2018-03-01

Mercury is a potent contaminant that can disrupt an organism's behavior and physiology, ultimately affecting reproductive success. Over the last 100 years, environmental deposition of anthropogenic sourced mercury has increased globally, particularly in the U.S. Northeast region. Marine birds are considered effective bioindicators of ecosystem health, including persistent marine contaminants. Goodale et al. (2008) found that mercury exposure exceeded adverse effects levels in some marine bird species breeding across the Gulf of Maine. We re-examined mercury contamination in four species identified as effective bioindicators. Compared with the previous sampling effort, inshore-feeding species showed significant increases in mercury exposure, while one pelagic-feeding species remained stable. This suggests that a major shift may have occurred in methylmercury availability in inshore waters of the Gulf of Maine. Understanding environmental mercury trends in the Gulf of Maine, and its significance to marine birds and other taxa will require a dedicated, standardized, long-term monitoring scheme. Copyright © 2018 Elsevier Ltd. All rights reserved.

The perception of self in birds.

PubMed

Derégnaucourt, Sébastien; Bovet, Dalila

2016-10-01

The perception of self is an important topic in several disciplines such as ethology, behavioral ecology, psychology, developmental and cognitive neuroscience. Self-perception is investigated by experimentally exposing different species of animals to self-stimuli such as their own image, smell or vocalizations. Here we review more than one hundred studies using these methods in birds, a taxonomic group that exhibits a rich diversity regarding ecology and behavior. Exposure to self-image is the main method for studying self-recognition, while exposing birds to their own smell is generally used for the investigation of homing or odor-based kin discrimination. Self-produced vocalizations - especially in oscine songbirds - are used as stimuli for understanding the mechanisms of vocal coding/decoding both at the neural and at the behavioral levels. With this review, we highlight the necessity to study the perception of self in animals cross-modally and to consider the role of experience and development, aspects that can be easily monitored in captive populations of birds. Copyright © 2016 Elsevier Ltd. All rights reserved.

A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat)

USGS Publications Warehouse

Reichert, Brian; Lausen, Cori; Loeb, Susan; Weller, Ted; Allen, Ryan; Britzke, Eric; Hohoff, Tara; Siemers, Jeremy; Burkholder, Braden; Herzog, Carl; Verant, Michelle

2018-06-14

The North American Bat Monitoring Program (NABat) aims to improve the state of conservation science for all species of bats shared by the United States, Canada, and Mexico. To accomplish this goal, NABat offers guidance and standardized protocols for acoustic monitoring of bats. In this document, “A Guide to Processing Bat Acoustic Data for the North American Bat Monitoring Program (NABat),” we provide general recommendations and specific workflows for the process of identifying bat species from acoustic files recorded using the NABat stationary point and mobile transect acoustic monitoring protocols.

Brain Monitoring with Electroencephalography and the Electroencephalogram-Derived Bispectral Index During Cardiac Surgery

PubMed Central

Kertai, Miklos D.; Whitlock, Elizabeth L.; Avidan, Michael S.

2011-01-01

Cardiac surgery presents particular challenges for the anesthesiologist. In addition to standard and advanced monitors typically used during cardiac surgery, anesthesiologists may consider monitoring the brain with raw or processed electroencephalography (EEG). There is strong evidence that a protocol incorporating the processed EEG Bispectral Index (BIS) decreases the incidence intraoperative awareness compared with standard practice. However there is conflicting evidence that incorporating the BIS into cardiac anesthesia practice improves “fast-tracking,” decreases anesthetic drug use, or detects cerebral ischemia. Recent research, including many cardiac surgical patients, shows that a protocol based on BIS monitoring is not superior to a protocol based on end tidal anesthetic concentration monitoring in preventing awareness. There has been a resurgence of interest in the anesthesia literature in limited montage EEG monitoring, including nonproprietary processed indices. This has been accompanied by research showing that with structured training, anesthesiologists can glean useful information from the raw EEG trace. In this review, we discuss both the hypothesized benefits and limitations of BIS and frontal channel EEG monitoring in the cardiac surgical population. PMID:22253267

Science for avian conservation: Priorities for the new millennium

USGS Publications Warehouse

Ruth, J.M.; Petit, D.R.; Sauer, J.R.; Samuel, M.D.; Johnson, F.A.; Fornwall, M.D.; Korschgen, C.E.; Bennett, J.P.

2003-01-01

Over the past decade, bird conservation activities have become the preeminent natural resource conservation effort in North America. Maturation of the North American Waterfowl Management Plan (NAWMP), establishment of Partners in Flight (PIF), and creation of comprehensive colonial waterbird and shorebird conservation plans have stimulated unprecedented interest in, and funding for, bird conservation in the United States, Canada, Mexico, and other countries in the western hemisphere. Key to that success in the United States has been active collaboration among federal, state and local governments, conservation organizations, academia, and industry. The U.S. Department of the Interior (DOI), which has primary statutory responsibility for migratory bird conservation and management, has been a key partner.Despite the great strides that have been made in bird conservation science, historical approaches to research and monitoring have often failed to provide sufficient information and understanding to effectively manage bird populations at large spatial scales. That shortcoming, and the lack of an integrated strategy and comprehensive set of research priorities, is more evident in light of the goals established by the North American Bird Conservation Initiative (NABCI). The NABCI is a trinational, coalition-driven effort to provide an organizational umbrella for existing conservation initiatives. The expanded focus of NABCI and individual bird conservation initiatives is to work together in an integrated, holistic fashion to keep common birds common and to increase populations of declining, threatened, and endangered species.To assist bird conservation initiatives in defining goals and developing new approaches to effective research, the U.S. Geological Survey (USGS), the research agency of DOI, convened a workshop, “Science for Avian Conservation: Understanding, Modeling, and Applying Ecological Relationships,” on 31 October–2 November 2000, which brought together 51 scientists from USGS, as well as scientists and conservationists from other agencies and organizations actively participating in NABCI. As the lead federal agency involved in bird conservation research, USGS has a clear legislative mandate to provide scientific information upon which future management plans and actions will be built.This article summarizes key issues and recommendations that arose from that workshop. The principal goal of the workshop was to guide USGS in defining its role, assessing capabilities, and directing future agency planning in support of bird conservation. A major component was to identify key areas of research needed in this new era of bird conservation science. Although tailored to the mission of USGS, workshop recommendations visualize a bold direction for future avian conservation science in which research and monitoring work in tandem with management to increase our understanding of avian populations and the processes that affect them. The USGS is a science agency whose role is to provide objective scientific information to management agencies and therefore is not directly involved in high-level resource policy-making or on-the-ground management decision making. Nevertheless, it is important to note that effective policy decision making must integrate the best available science with political and economic realities to achieve successful avian conservation—an important subject acknowledged in the workshop, but largely beyond its scope of discussion. Williams (2003) questions regarding how scientific information can be effectively communicated to decision makers and incorporated into natural resource policy. Without an aggressive vision and the willingness of researchers, managers, and policy makers to implement it, conservation of North American birds is likely to proceed without the full benefit of scientific investigation. These recommendations represent the principal conclusions drawn by workshop participants and do not necessarily reflect official USGS policy.

Highly pathogenic avian influenza (H5N1) in ducks and in-contact chickens in backyard and smallholder commercial duck farms in Viet Nam.

PubMed

Henning, Joerg; Henning, Kate A; Morton, John M; Long, Ngo T; Ha, Nguyen T; Vu, Le T; Vu, Pham P; Hoa, Dong M; Meers, Joanne

2011-09-01

Scavenging ducks are thought to play an important role in the maintenance and transmission of highly pathogenic avian influenza (HPAI) H5N1 virus among domesticated and wild bird populations in South East Asia, but detailed field epidemiological results describing the infection status of domestic ducks and in-contact chickens have not been published. We conducted a longitudinal study, monitoring ducks and in-contact chickens in 80 flocks in the Mekong Delta of Viet Nam with bi-monthly testing from May 2007 until May 2008. Because H5 vaccination campaigns are conducted at regular intervals in poultry flocks in Viet Nam, both unvaccinated sentinel and H5 vaccinates were monitored. On each farm, a total of 10 birds were selected: 7 ducks (4 unvaccinated and 3 vaccinated) and 3 chickens (2 unvaccinated and 1 vaccinated) that were in close contact with the ducks. Blood samples were tested for H5 antibodies using the hemagglutination inhibition test, with H5 antibody titers ≥2(4) considered to indicate past exposure to H5 field or vaccine virus. Titers of vaccinated birds were analyzed for samples collected more than 3 weeks post-vaccination. Pooled oropharyngeal and cloacal swabs were assessed for H5 viral RNA using real-time PCR. Bird- and flock-level prevalences were estimated accounting for sampling fractions and clustering under the multi-stage sampling design with birds being sampled within flocks within villages in four different provinces. In total, serum and swab samples from 5409 birds-samplings were analyzed. Bird-level seroprevalence was 17.5% (95% CI: 14.1, 20.9) amongst unvaccinated ducks and 10.7% (95% CI: 7.4, 14.4) amongst unvaccinated in-contact chickens. Flock-level seroprevalence (proportion of flock-visits with at least one unvaccinated bird test positive) was 42.6% (95% CI: 38.0, 47.2) for ducks and 19.0% (95% CI: 13.6, 24.4) for chickens. Only 54.3% (95% CI: 39.2, 69.3) of vaccinated ducks and 55.5% (95% CI: 46.8, 64.2) of vaccinated in-contact chickens had H5 antibodies at more than 3 weeks post-vaccination. At about 40% and 48% of flock-visits, less than 50% of sampled vaccinated ducks and chickens, respectively, had positive titers. The flock-level virus prevalence (proportion of flocks with at least one bird positive for H5 virus of the vaccinated and unvaccinated birds tested) was 0.7% (95% CI: 0.0, 2.1). No HPAI outbreaks or mortality suspected to be due to HPAI occurred in study flocks during the observation period. Our results indicate that a substantial proportion of ducks and in-contact chickens were exposed to H5 virus during the study period. In the face of this widespread exposure to H5 virus, and despite only moderate proportions of birds developing positive titers post-vaccination, flocks were not affected by HPAI outbreaks during our study period. The higher bird-level seroprevalence in ducks compared to in-contact chickens may be due to greater durations of antibody persistence in ducks or greater rates of H5 virus exposure. These findings indicate that ducks are potentially an important source of H5 virus for other bird species. Copyright © 2010 Elsevier B.V. All rights reserved.

Outbreak and Cocirculation of Three Different Usutu Virus Strains in Eastern Germany.

PubMed

Sieg, Michael; Schmidt, Volker; Ziegler, Ute; Keller, Markus; Höper, Dirk; Heenemann, Kristin; Rückner, Antje; Nieper, Hermann; Muluneh, Aemero; Groschup, Martin H; Vahlenkamp, Thomas W

2017-09-01

Usutu virus (USUV) is a mosquito-borne flavivirus accounting for large-scale deaths in resident bird populations. In this study, we show the introduction of USUV to Eastern Germany resulting in massive death of birds, particularly blackbirds (Turdus merula). We found that three diverse USUV lineages ("Europe 3," "Africa 2," and "Africa 3-like") circulated simultaneously. Moreover, we detected USUV in Culex pipiens in a region where no dead birds were reported, strengthening the need for mosquito monitoring to uncover the spread of arboviruses. Furthermore, phylogenetic analyses revealed that mutations accumulated, in particular, in the NS3 region within short time periods. In addition, comparison of whole-genome sequences showed that diverse isolates of the cluster "Africa 3-like" are cocirculating in Germany due to independent introduction events.

KSC-06pd1340

NASA Image and Video Library

2006-06-27

KENNEDY SPACE CENTER, FLA. - This associated computer image shows data being relayed from the avian radars recently set up on Launch Pad 39B. The computer is one of two in Firing Room 4 of the Launch Control Center. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/George Shelton

KSC-06pd1338

NASA Image and Video Library

2006-06-27

KENNEDY SPACE CENTER, FLA. - In Firing Room 4 of the Launch Control Center, NASA Test Director Steve Payne points to laptop computers that will display data relayed from the avian radars recently set up on Launch Pad 39B. When birds, especially vultures, are near the shuttle during a launch, impact on a critical area is possible and could cause catastrophic damage to the vehicle. Already proven affective for aviation where threats posed by bird strikes have been a problem, the avian radar, known as Aircraft Birdstrike Avoidance Radar, provides horizontal and vertical scanning and can monitor either launch pad for movement of vultures around them. If data relayed from the avian radar indicates large birds are dangerously close to the vehicle, controllers could hold the countdown. Photo credit: NASA/George Shelton

Effects of vegetation, corridor width and regional land use on early successional birds on powerline corridors.

PubMed

Askins, Robert A; Folsom-O'Keefe, Corrine M; Hardy, Margaret C

2012-01-01

Powerline rights-of-way (ROWs) often provide habitat for early successional bird species that have suffered long-term population declines in eastern North America. To determine how the abundance of shrubland birds varies with habitat within ROW corridors and with land use patterns surrounding corridors, we ran Poisson regression models on data from 93 plots on ROWs and compared regression coefficients. We also determined nest success rates on a 1-km stretch of ROW. Seven species of shrubland birds were common in powerline corridors. However, the nest success rates for prairie warbler (Dendroica discolor) and field sparrow (Spizella pusilla) were <21%, which is too low to compensate for estimated annual mortality. Some shrubland bird species were more abundant on narrower ROWs or at sites with lower vegetation or particular types of vegetation, indicating that vegetation management could be refined to favor species of high conservation priority. Also, several species were more abundant in ROWs traversing unfragmented forest than those near residential areas or farmland, indicating that corridors in heavily forested regions may provide better habitat for these species. In the area where we monitored nests, brood parasitism by brown-headed cowbirds (Molothrus ater) occurred more frequently close to a residential area. Although ROWs support dense populations of shrubland birds, those in more heavily developed landscapes may constitute sink habitat. ROWs in extensive forests may contribute more to sustaining populations of early successional birds, and thus may be the best targets for habitat management.

Effects of exotic fish farms on bird communities in lake and marine ecosystems

NASA Astrophysics Data System (ADS)

Jiménez, Jaime E.; Arriagada, Aldo M.; Fontúrbel, Francisco E.; Camus, Patricio A.; Ávila-Thieme, M. Isidora

2013-08-01

Salmon farming is a widespread activity around the world, also known to promote diverse environmental effects on aquatic ecosystems. However, information regarding the impact of salmon farming on bird assemblages is notably scarce. We hypothesize that salmon farming, by providing food subsidies and physical structures to birds, will change their local community structure. To test this hypothesis, we conducted a seasonal monitoring of bird richness, abundance, and composition at paired salmon pen and control plots in two marine and two lake sites in southern Chile, from fall 2002 to summer 2004. Overall, salmon farming had no significant effects on species richness, but bird abundance was significantly and noticeably higher in salmon pens than in controls. Such aggregation was mainly accounted for by the trophic guilds of omnivores, diving piscivores, carrion eaters, and perching piscivores, but not by invertebrate feeders, herbivores, and surface feeders. Species composition was also significantly and persistently different between salmon pens and controls within each lake or marine locality. The patterns described above remained consistent across environment types and seasons indicating that salmon farming is changing the community structure of birds in both lake and marine habitats by promoting functional and aggregation responses, particularly by favoring species with broader niches. Such local patterns may thus anticipate potential threats from the ongoing expansion of the salmon industry to neighboring areas in Chile, resulting in regional changes of bird communities, toward a less diverse one and dominated by opportunistic, common, and generalist species such as gulls, vultures, and cormorants.

Effects of marsh pond terracing on coastal wintering waterbirds before and after Hurricane Rita.

PubMed

O'Connell, Jessica L; Nyman, John A

2011-11-01

From February to March 2005-2006, we surveyed wintering waterbirds to test effects of terracing on coastal pond use before and after Hurricane Rita. Marsh terracing is intended to slow coastal marsh loss in the Chenier Plain by slowing marsh erosion and encouraging vegetation expansion. Terraces also increase marsh edge in ponds, possibly benefiting waterbirds. We monitored paired terraced and unterraced ponds in three sites within southwestern Louisiana's Chenier Plain. Waterbirds were 75% more numerous in terraced than unterraced ponds. Waterbird richness was similar among ponds when corrected for number of individuals, suggesting terracing increased bird density but did not provide habitat unique from unterraced ponds. Birds were 93% more numerous following Hurricane Rita, mostly due to an influx of migrating waterfowl. Year round residents were similar in number before and after Hurricane Rita. Resident richness did not differ among years after correcting for number of observed individuals. Wading and dabbling foragers were more abundant in terraced ponds and these two guilds represented 74% of birds observed. We detected no difference among ponds for other guilds, i.e., probing, aerial, and diving foragers. Increasing proportion of mash edge increased bird density disproportionately: On average ponds with 10% edge had 6 birds observed and ponds with 30% edge had 16 birds observed. Terraces increased habitat interspersion and were an effective tool for increasing numbers of wintering waterfowl and wading birds. The extent to which terraces were sustainable following hurricane forces is unknown.

Effects of Marsh Pond Terracing on Coastal Wintering Waterbirds Before and After Hurricane Rita

NASA Astrophysics Data System (ADS)

O'Connell, Jessica L.; Nyman, John A.

2011-11-01

From February to March 2005-2006, we surveyed wintering waterbirds to test effects of terracing on coastal pond use before and after Hurricane Rita. Marsh terracing is intended to slow coastal marsh loss in the Chenier Plain by slowing marsh erosion and encouraging vegetation expansion. Terraces also increase marsh edge in ponds, possibly benefiting waterbirds. We monitored paired terraced and unterraced ponds in three sites within southwestern Louisiana's Chenier Plain. Waterbirds were 75% more numerous in terraced than unterraced ponds. Waterbird richness was similar among ponds when corrected for number of individuals, suggesting terracing increased bird density but did not provide habitat unique from unterraced ponds. Birds were 93% more numerous following Hurricane Rita, mostly due to an influx of migrating waterfowl. Year round residents were similar in number before and after Hurricane Rita. Resident richness did not differ among years after correcting for number of observed individuals. Wading and dabbling foragers were more abundant in terraced ponds and these two guilds represented 74% of birds observed. We detected no difference among ponds for other guilds, i.e., probing, aerial, and diving foragers. Increasing proportion of mash edge increased bird density disproportionately: On average ponds with 10% edge had 6 birds observed and ponds with 30% edge had 16 birds observed. Terraces increased habitat interspersion and were an effective tool for increasing numbers of wintering waterfowl and wading birds. The extent to which terraces were sustainable following hurricane forces is unknown.

Effects of Vegetation, Corridor Width and Regional Land Use on Early Successional Birds on Powerline Corridors

PubMed Central

Askins, Robert A.; Folsom-O'Keefe, Corrine M.; Hardy, Margaret C.

2012-01-01

Powerline rights-of-way (ROWs) often provide habitat for early successional bird species that have suffered long-term population declines in eastern North America. To determine how the abundance of shrubland birds varies with habitat within ROW corridors and with land use patterns surrounding corridors, we ran Poisson regression models on data from 93 plots on ROWs and compared regression coefficients. We also determined nest success rates on a 1-km stretch of ROW. Seven species of shrubland birds were common in powerline corridors. However, the nest success rates for prairie warbler (Dendroica discolor) and field sparrow (Spizella pusilla) were <21%, which is too low to compensate for estimated annual mortality. Some shrubland bird species were more abundant on narrower ROWs or at sites with lower vegetation or particular types of vegetation, indicating that vegetation management could be refined to favor species of high conservation priority. Also, several species were more abundant in ROWs traversing unfragmented forest than those near residential areas or farmland, indicating that corridors in heavily forested regions may provide better habitat for these species. In the area where we monitored nests, brood parasitism by brown-headed cowbirds (Molothrus ater) occurred more frequently close to a residential area. Although ROWs support dense populations of shrubland birds, those in more heavily developed landscapes may constitute sink habitat. ROWs in extensive forests may contribute more to sustaining populations of early successional birds, and thus may be the best targets for habitat management. PMID:22363660

Effects of radiomarking on prairie falcons: Attachment failures provide insights about survival

USGS Publications Warehouse

Steenhof, Karen; Bates, Kirk K.; Fuller, Mark R.; Kochert, Michael N.; McKinley, James O.; Lukacs, Paul M.

2006-01-01

From 1999–2002, we attached satellite-received platform transmitter terminals (PTTs) to 40 adult female prairie falcons (Falco mexicanus) on their nesting grounds in the Snake River Birds of Prey National Conservation Area (NCA) in southwest Idaho. We used 3 variations of a backpack harness design that had been used previously on raptors. Each radiomarked falcon also received a color leg band with a unique alphanumeric code. We monitored survival of birds using radiotelemetry and searched for marked birds on their nesting grounds during breeding seasons after marking. Because 6 falcons removed their harnesses during the first year, we were able to compare survival rates of birds that shed PTTs with those that retained them. We describe a harness design that failed prematurely as well as designs that proved successful for long-term PTT attachment. We resighted 21 marked individuals on nesting areas 1–5 years after they were radiomarked and documented 13 mortalities of satellite-tracked falcons. We used a Cormack-Jolly-Seber model to estimate apparent survival probability based on band resighting and telemetry data. Platform transmitter terminals had no short-term effects on falcons or their nesting success during the nesting season they were marked, but birds that shed their transmitters increased their probability of survival. Estimated annual survival for birds that shed their transmitters was 87% compared to 49% for birds wearing transmitters. We discuss possible reasons for differences in apparent survival rates and offer recommendations for future marking of falcons.

Effects of radio marking on prairie falcons: Attachment failures provide insights about survival

USGS Publications Warehouse

Steenhof, Karen; Bates, Kirk K.; Fuller, Mark R.; Kochert, Michael N.; McKinley, J.O.; Lukacs, Paul M.

2006-01-01

From 1999-2002, we attached satellite-received platform transmitter terminals (PTTs) to 40 adult female prairie falcons (Falco mexicanus) on their nesting grounds in the Snake River Birds of Prey National Conservation Area (NCA) in southwest Idaho. We used 3 variations of a backpack harness design that had been used previously on raptors. Each radiomarked falcon also received a color leg band with a unique alphanumeric code. We monitored survival of birds using radiotelemetry and searched for marked birds on their nesting grounds during breeding seasons after marking. Because 6 falcons removed their harnesses during the first year, we were able to compare survival rates of birds that shed PTTs with those that retained them. We describe a harness design that failed prematurely as well as designs that proved successful for long-term PTT attachment. We resighted 21 marked individuals on nesting areas 1-5 years after they were radiomarked and documented 13 mortalities of satellite-tracked falcons. We used a Cormack-Jolly-Seber model to estimate apparent survival probability based on band resighting and telemetry data. Platform transmitter terminals had no short-term effects on falcons or their nesting success during the nesting season they were marked, but birds that shed their transmitters increased their probability of survival. Estimated annual survival for birds that shed their transmitters was 87% compared to 49% for birds wearing transmitters. We discuss possible reasons for differences in apparent survival rates and offer recommendations for future marking of falcons.

Effects of exotic fish farms on bird communities in lake and marine ecosystems.

PubMed

Jiménez, Jaime E; Arriagada, Aldo M; Fontúrbel, Francisco E; Camus, Patricio A; Avila-Thieme, M Isidora

2013-08-01

Salmon farming is a widespread activity around the world, also known to promote diverse environmental effects on aquatic ecosystems. However, information regarding the impact of salmon farming on bird assemblages is notably scarce. We hypothesize that salmon farming, by providing food subsidies and physical structures to birds, will change their local community structure. To test this hypothesis, we conducted a seasonal monitoring of bird richness, abundance, and composition at paired salmon pen and control plots in two marine and two lake sites in southern Chile, from fall 2002 to summer 2004. Overall, salmon farming had no significant effects on species richness, but bird abundance was significantly and noticeably higher in salmon pens than in controls. Such aggregation was mainly accounted for by the trophic guilds of omnivores, diving piscivores, carrion eaters, and perching piscivores, but not by invertebrate feeders, herbivores, and surface feeders. Species composition was also significantly and persistently different between salmon pens and controls within each lake or marine locality. The patterns described above remained consistent across environment types and seasons indicating that salmon farming is changing the community structure of birds in both lake and marine habitats by promoting functional and aggregation responses, particularly by favoring species with broader niches. Such local patterns may thus anticipate potential threats from the ongoing expansion of the salmon industry to neighboring areas in Chile, resulting in regional changes of bird communities, toward a less diverse one and dominated by opportunistic, common, and generalist species such as gulls, vultures, and cormorants.

Causes of mortality and unintentional poisoning in predatory and scavenging birds in California

PubMed Central

Kelly, Terra R.; Poppenga, Robert H.; Woods, Leslie A.; Hernandez, Yvette Z.; Boyce, Walter M.; Samaniego, Francisco J.; Torres, Steve G.; Johnson, Christine K.

2014-01-01

Objectives We documented causes of mortality in an opportunistic sample of golden eagles, turkey vultures and common ravens, and assessed exposure to several contaminants that have been found in carrion and common prey for these species. Methods Dead birds were submitted for testing through wildlife rehabilitation centres and a network of wildlife biologists in California from 2007 to 2009. Results The leading causes of mortality in this study were collision-related trauma (63 per cent), lead intoxication (17 per cent) and anticoagulant rodenticide poisoning (8 per cent). Elevated liver lead concentration (≥2 µg/g) and bone lead concentration (>6 µg/g) were detected in 25 and 49 per cent of birds tested, respectively. Approximately 84 per cent of birds tested had detectable rodenticide residues. The majority of rodenticide exposure occurred in peri-urban areas, suggesting that retail sale and use of commensal rodent baits, particularly in residential and semi-residential areas in California, may provide a pathway of exposure. Conclusions Monitoring anthropogenic causes of mortality in predatory and scavenging bird species provides important data needed to inform on mitigation and regulatory efforts aimed at reducing threats to these populations. PMID:26392875

Contaminants in sediment, food-chain biota, and bird eggs from the Newport Bay watershed, Orange County, California.

PubMed

Santolo, Gary M; Byron, Earl R; Ohlendorf, Harry M

2016-02-01

Groundwater-related discharges in the San Diego Creek/Newport Bay watershed in Orange County, California have the potential to adversely affect the surface waters within the watershed and would likely not comply with the established total maximum daily loads (TMDLs) for the watershed. In 2004 and 2005, we studied the concentrations of contaminants of TMDL concern (particularly selenium [Se]) in birds that are at risk of exposure to contaminated food items because they feed and nest in the Newport Bay watershed. Most bioaccumulation is from elevated Se in groundwater downstream of a historic terminal swamp. Se bioaccumulation was observed in all biota tested, and DDE was found in fish and bird egg samples. Effects of contaminants on fish and birds are inconclusive due to the management disturbances in the watershed (e.g., flood control) and lack of bird nesting habitat. Although a significant relationship was observed between DDE concentrations and eggshell thinning in American avocet (Recurvirostra americana) eggs, the shell thinning in avocet and other species examined was not enough to result in hatching failure. Further focused monitoring efforts will be needed to characterize the exposure and risk levels.

Establishing appropriate measures for monitoring aging in birds: comparing short and long lived species

USGS Publications Warehouse

Ottinger, M.A.; Reed, E.; Wu, J.; Thompson, N.; French, J.B.

2003-01-01

In order to reveal patterns of reproductive aging in birds we focus on a short lived species, the Japanese quail and the American kestrel, which has a life span of medium length. Quail have been studied extensively in the laboratory as models for understanding avian endocrinology and behavior, and as a subject for toxicological research and testing. In the lab, Japanese quail show age-related deterioration in endocrine, behavioral, and sensory system responses; the American kestrel is relatively long lived and shows moderate evidence of senescence in the oldest birds. Using data collected from captive kestrels at the Patuxent Wildlife Research Center, a database was designed to document selected parameters over the life cycle of the kestrels. Life table data collated from many species indicate that longer lived species of birds show senescence in survival ability but this pattern has not been established for reproductive function. We suggest that useful comparisons among species can be made by identifying stages in reproductive life history, organized on a relative time scale. Preliminary data from quail and kestrels, admittedly only two species, do not yet indicate a pattern of greater reproductive senescence in longer-lived birds.

Hawai`i forest bird monitoring database: Database dictionary

USGS Publications Warehouse

Camp, Richard J.; Genz, Ayesha

2017-01-01

Between 1976 and 1981, the U.S. Fish and Wildlife Service (now U.S. Geological Survey – Pacific Island Ecosystems Research Center [USGS-PIERC]) conducted systematic surveys of forest birds and plant communities on all the main Hawaiian Islands, except O‘ahu, as part of the Hawai‘i Forest Bird Surveys (HFBS). Results of this monumental effort have guided conservation efforts and provided the basis for many plant and bird recovery plans and land acquisition decisions in Hawai‘i. Unfortunately, these estimates and range maps are now seriously outdated, hindering modern conservation decision-making and recovery planning. HFBIDP staff work closely with land managers and others to identify the location of bird populations in need of protection. In addition, HFBIDP is able to assess field collection methods, census areas, and survey frequency for their effectiveness. Survey and geographical data are refined and released in successive versions, each more inclusive, detailed, and accurate than the previous release. Incrementally releasing data gives land managers and survey coordinators reasonably good data to work with early on rather than waiting for the release of ‘perfect’ data, ‘perfectly’ analyzed. Consequently, summary results are available in a timely manner.

An evaluation of beached bird monitoring approaches.

PubMed

Seys, Jan; Offringa, Henk; Van Waeyenberge, Jeroen; Meire, Patrick; Kuijken, Eckhart

2002-04-01

Oil-pollution monitoring at sea through beach bird surveying would undoubtedly benefit from a further standardisation of methods, enhancing the efficiency of data collection. In order to come up with useful recommendations, we evaluated various approaches of beached bird collection at the Belgian coast during seven winters (1993-1999). Data received in a passive way by one major rehabilitation centre were compared to the results of targeted beach surveys carried out at different scales by trained ornithologists: 'weekly' surveys - with a mean interval of 9 days - restricted to a fixed 16.7 km beach stretch, 'monthly' surveys over the entire coastline (62.1 km) and an annual 'international' survey in Belgium over the same distance at the end of February. Data collected through Belgian rehabilitation centres concern injured, living birds collected in a non-systematical way. Oil rates derived from these centres appear to be strongly biased to oiled auks and inshore bird species, and are hence of little use in assessing the extent of oil pollution at sea. The major asset of rehabilitation centres in terms of data collection seems to be their continuous warning function for events of mass mortality. Weekly surveys on a representative and large enough section rendered reliable data on oil rates, estimates of total number of bird victims, representation of various taxonomic groups and species-richness and were most sensitive in detecting events quickly (wrecks, oil-slicks, severe winter mortality, etc.). Monthly surveys gave comparable results, although they overlooked some important beaching events and demonstrated slightly higher oil rates, probably due to the higher chance to miss short-lasting wrecks of auks. Since the monthly surveys in Belgium were carried out by a network of volunteers and were spread over a larger beach section, they should be considered as best performing. Single 'international beached bird surveys' in February gave reliable data on total victim number (once the mean ratio between numbers in various months is known) and oil rate (provided a sufficiently large sample can be collected), but failed in tracking events. It is a particularly attractive approach because of its long tradition, resulting in invaluable long-term databases, and the uniformity in which these surveys are organised on a large scale. The minimal distance for a monthly survey amounts to 25-30 km (40-50% of Belgian coastline) up to 40 km (65%) in order to attain sound figures for oil rate and species-richness, respectively. These distances are primarily determined by the number of bird corpses that may be collected and are hence a function of beaching intensity and corpse detection rate.

Perches and elevated platforms in commercial broiler farms: use and effect on walking ability, incidence of tibial dyschondroplasia and bone mineral content.

PubMed

Kaukonen, E; Norring, M; Valros, A

2017-05-01

Modern fast-growing broilers spend excessive periods resting and their activity further decreases with age. Inactivity has been suggested to increase impaired gait and the incidence of leg disorders. Tibial dyschondroplasia (TD) is a common leg pathology in broilers. A more complex environment might facilitate more activity and improve leg health. Perches or elevated platforms bring variety to broilers' environment and could motivate more locomotion. This study examined the impact of perches and elevated platforms on walking ability, the occurrence of TD and level of bone ash and mineral contents. The investigation was performed on four commercial broiler farms throughout six consecutive batches with platforms and four to five with perches. On each farm at least two separate houses were included, enabling the comparison of furnished flocks to control flocks during each batch. Plastic slats with ramp access elevated by 30 cm or wooden perches of 10 and 30 cm height were offered in the furnished house. Farmers recorded the platform and perch usage twice a week with a five-point scale. Gait was scored before slaughter on a six-point scale according to the Welfare Quality® assessment protocol for poultry. The severity of TD was determined using a four-point scale on farm from all birds gait scored as 3 and at slaughter from 200 birds/flock. Farmers estimated 50% to 100% of the platforms to be occupied in all flocks throughout the entire growing period. Only single birds were perching, thus perch structures were constantly evaluated to be empty. Due to the low use, the perch-equipped houses were excluded when analysing bone content, walking ability and TD. On average, 30% of the tested birds exhibited gait score ⩾3. Younger scoring age resulted in a lower mean gait score and a lower percentage of scores 3 and 4 to 5. Overall, 2.3% of the birds examined at slaughter and 3.5% of the birds with gait score 3 were affected by TD. Leg health was better in birds with access to platforms: mean gait score, the percentage of birds scoring 3, and TD percentage and severity were lower in birds in platform-equipped houses. Elevated structures such as platforms, offering additional possibilities for locomotion to broilers seem to improve their leg health.

Dietary resveratrol supplementation prevents transport-stress-impaired meat quality of broilers through maintaining muscle energy metabolism and antioxidant status

PubMed Central

Zhang, C.; Wang, L.; Zhao, X. H.; Chen, X. Y.; Yang, L.; Geng, Z. Y.

2017-01-01

Abstract This experiment was to evaluate the effect of dietary resveratrol (Res) supplementation (0, 400 mg/kg) on growth performance, meat quality, and muscle anaerobic glycolysis and antioxidant capacity of transported broilers. A total of 360 21-day-old male Cobb broilers was randomly allotted to 2 dietary treatments (Res-free group and Res group) with 12 replicates of 15 birds each. On the morning of d 42, after a 9-hour fast, 24 birds (2 birds of each replicate) were selected from the Res-free group and then equally placed into 2 crates, and the other 12 birds (one bird of each replicate) were selected from the Res group and then placed into the other crate. All birds in the 3 crates were transported according to the following protocols: 0-hour transport of birds in the Res-free group (control group), 3-hour transport of birds in the Res-free group (T group), and 3-hour transport of birds in the Res group (T + Res group). The results showed that Res not only improved feed conversion ratio (P < 0.05) but also tended to improve birds’ final body weight (P < 0.10). In the Res-free group, a 3-hour transport increased serum corticosterone concentration, muscle malondialdehyde (MDA) and lactate contents, and muscle lactate dehydrogenase (LDH) activity, while it decreased muscle glycogen content, total superoxide dismutase (T-SOD), and glutathione peroxidase (GSH-PX) activities (P < 0.05), which induced decreased breast meat quality (lower pH24h and higher drip loss and L*24 h, P < 0.05). Nevertheless, compared with the T group, Res increased muscle glycogen content and T-SOD and GSH-PX activities (P < 0.05 or P < 0.10), while it decreased muscle MDA content and LDH activity (P < 0.05), which is beneficial to the meat quality maintenance of transported broilers (lower drip loss, L*24 h, and higher pH24h, P < 0.05 or P < 0.10). This study provides the first evidence that dietary resveratrol supplementation prevents transport-stress-impaired meat quality of broilers, possibly through decreasing the muscle anaerobic glycolysis metabolism and improving the muscle antioxidant capacity. PMID:28339929

Short-term fasts increase levels of halogenated flame retardants in tissues of a wild incubating bird.

PubMed

Marteinson, Sarah C; Drouillard, Ken G; Verreault, Jonathan

2016-04-01

Many species are adapted for fasting during parts of their life cycle. For species undergoing extreme fasts, lipid stores are mobilized and accumulated contaminants can be released to exert toxicological effects. However, it is unknown if short-term fasting events may have a similar effect. The objective of this study was to determine if short successive fasts are related to contaminant levels in liver and plasma of birds. In ring-billed gulls (Larus delawarensis), both members of the pair alternate between incubating the nest for several hours (during which they fast) and foraging, making them a useful model for examining this question. Birds were equipped with miniature data loggers recording time and GPS position for two days to determine the proportion and duration of time birds spent in these two activities. Liver and plasma samples were collected, and halogenated flame retardants (HFRs) (PBDEs and dechlorane plus) and organochlorines (OCs) (PCBs, DDTs, and chlordane-related compounds) were determined. Most birds (79%) exhibited plasma lipid content below 1%, indicating a likely fasted state, and plasma lipid percent declined with the number of hours spent at the nest site. The more time birds spent at their nest site, the higher were their plasma and liver concentrations of HFRs. However, body condition indices were unrelated to either the amount of time birds fasted at the nest site or contaminant levels, suggesting that lipid mobilization might not have been severe enough to affect overall body condition of birds and to explain the relationship between fasting and HFR concentrations. A similar relationship between fasting and OC levels was not observed, suggesting that different factors are affecting short-term temporal variations in concentrations of these two classes of contaminants. This study demonstrates that short fasts can be related to increased internal contaminant exposure in birds and that this may be a confounding factor in research and monitoring involving tissue concentrations of HFRs in wild birds. Copyright © 2015 Elsevier Inc. All rights reserved.

Assessing the habitat suitability of agricultural landscapes for characteristic breeding bird guilds using landscape metrics.

PubMed

Borges, Friederike; Glemnitz, Michael; Schultz, Alfred; Stachow, Ulrich

2017-04-01

Many of the processes behind the decline of farmland birds can be related to modifications in landscape structure (composition and configuration), which can partly be expressed quantitatively with measurable or computable indices, i.e. landscape metrics. This paper aims to identify statistical relationships between the occurrence of birds and the landscape structure. We present a method that combines two comprehensive procedures: the "landscape-centred approach" and "guild classification". Our study is based on more than 20,000 individual bird observations based on a 4-year bird monitoring approach in a typical agricultural area in the north-eastern German lowlands. Five characteristic bird guilds, each with three characteristic species, are defined for the typical habitat types of that area: farmland, grassland, hedgerow, forest and settlement. The suitability of each sample plot for each guild is indicated by the level of persistence (LOP) of occurrence of three respective species. Thus, the sample plots can be classified as "preferred" or "less preferred" depending on the lower and upper quartiles of the LOP values. The landscape structure is characterized by 16 different landscape metrics expressing various aspects of landscape composition and configuration. For each guild, the three landscape metrics with the strongest rank correlation with the LOP values and that are not mutually dependent were identified. For four of the bird guilds, the classification success was better than 80%, compared with only 66% for the grassland bird guild. A subset of six landscape metrics proved to be the most meaningful and sufficiently classified the sample areas with respect to bird guild suitability. In addition, derived logistic functions allowed the production of guild-specific habitat suitability maps for the whole landscape. The analytical results show that the proposed approach is appropriate to assess the habitat suitability of agricultural landscapes for characteristic bird guilds.

Design of MPPT Controller Monitoring Software Based on QT Framework

NASA Astrophysics Data System (ADS)

Meng, X. Z.; Lu, P. G.

2017-10-01

The MPPT controller was a hardware device for tracking the maximum power point of solar photovoltaic array. Multiple controllers could be working as networking mode by specific communicating protocol. In this article, based on C++ GUI programming with Qt frame, we designed one sort of desktop application for monitoring and analyzing operational parameter of MPPT controller. The type of communicating protocol for building network was Modbus protocol which using Remote Terminal Unit mode and The desktop application of host computer was connected with all the controllers in the network through RS485 communication or ZigBee wireless communication. Using this application, user could monitor the parameter of controller wherever they were by internet.

Recommendations for the use of mist nets for inventory and monitoring of bird populations

Treesearch

C. John Ralph; Erica H. Dunn; Will J. Peach; Colleen M. Handel

2004-01-01

We provide recommendations on the best practices for mist netting for the purposes of monitoring population parameters such as abundance and demography. Studies should be carefully thought out before nets are set up, to ensure that sampling design and estimated sample size will allow study objectives to be met. Station location, number of nets, type of nets, net...

When Common Birds Became Rare: Historical Records Shed Light on Long-Term Responses of Bird Communities to Global Change in the Largest Wetland of France.

PubMed

Galewski, Thomas; Devictor, Vincent

2016-01-01

Many species have suffered large population declines due to the anthropogenic influence on ecosystems. Understanding historical population trends is essential for informing best efforts to preserve species. We propose a new method to reconstruct the past structure of a regional species pool, based on historical naturalist literature. Qualitative information collected from annotated checklists and reports can be relevant to identify major long-term community changes. We reviewed ornithological literature on the Camargue, the largest wetland in France. We reconstructed the entire breeding bird community from 1830 to 2009 and translated historical data into semi-quantitative data. This data permitted a calculation of a Community Commonness Index to measure the average level of abundance of species in a community. The Community Specialization and Community Temperature Indices were used to evaluate the potential long-term impact of land-use and climate changes on the composition of the regional bird species pool. We found a decrease in average abundance and specialization between 1950 and 1989, suggesting that changes in land-use negatively impacted the structure and composition of the local bird community by reducing species abundance and removing habitat-specialists (e.g. Southern Grey Shrike, Greater Short-toed Lark). These results are likely to be linked with a major loss of natural habitats in the Camargue between 1942 and 1984 when natural areas and traditional farmland were converted into intensive cultivated lands. We also found fluctuations among species with high versus low temperature preference. However, long-term effects of climate change on the bird community might be blurred by the impact of land-use changes. Overall, our results contrast with those obtained from well-monitored colonial waterbirds showing long-term increases. Our results plead for a more regular use of historical naturalist data when examining long-term changes in species communities as they allow the establishment of an older temporal point of reference and consideration of species not covered by traditional monitoring schemes.

Using a novel micro-sampling technique to monitor the effects of methylmercury on the eggs of wild birds

USGS Publications Warehouse

Klimstra, J.D.; Stebbins, K.R.; Heinz, G.H.

2007-01-01

Methylmercury is the predominant chemical form of mercury reported in the eggs of wild birds. The embryo is the life stage at which birds are most sensitive to methylmercury. Protective guidelines have been based largely on captive-breeding studies done with chickens (Gallus domesticus), mallards (Anas platyrhynchos), and ring-necked pheasants (Phasianus colchicus). Typically these studies are cost and time prohibitive. In the past, researchers have used either egg injections or the ?sample egg? technique to determine contaminant effects on bird eggs. Both techniques have their limitations. As an alternative to the above methods and because most of the methylmercury is found in the albumen we have developed a novel, less invasive technique, to micro-sample the albumen of eggs in the field. An albumen sample would be analyzed and then compared to the hatching success of that egg. Using the micro-sampling procedure, the egg is oriented with the blunt end up and the pointed end down. A vent hole is drilled at the top to relieve pressure. Approximately one third up from the bottom, a withdrawal site is drilled just until the inner shell membrane is exposed. A syringe with a 21 or 18 gauge needle is gently inserted just into the egg and approximately 200?300?l of albumen is removed. Almost concurrently this site and then the vent are sealed. Thus far we have experimented with both chicken and mallard eggs in the laboratory. We sampled chicken eggs at days 0 and 3 of incubation with a hatching success of 76% and 70%, respectively. Neither group was significantly different from control eggs (P=0.52, 0.54). Field studies are in progress using this technique in which birds are allowed to incubate their own eggs. We envision micro-sampling to be a tool that researchers and managers could use in the field to determine the effects of mercury or other contaminants in bird populations. Micro-sampling would reduce the impact on the sampled population and could be used to monitor sensitive species without impacting reproduction and recruitment.

The Hawaii protocol for scientific monitoring of coffee berry borer: a model for coffee agroecosystems worldwide

USDA-ARS?s Scientific Manuscript database

Coffee Berry Borer (CBB) is the most devastating insect pest for coffee crops worldwide. We developed a scientific monitoring protocol aimed at capturing and quantifying the dynamics and impact of this invasive insect pest as well as the development of its host plant across a heterogeneous landscape...

The Deep Impact Network Experiment Operations Center Monitor and Control System

NASA Technical Reports Server (NTRS)

Wang, Shin-Ywan (Cindy); Torgerson, J. Leigh; Schoolcraft, Joshua; Brenman, Yan

2009-01-01

The Interplanetary Overlay Network (ION) software at JPL is an implementation of Delay/Disruption Tolerant Networking (DTN) which has been proposed as an interplanetary protocol to support space communication. The JPL Deep Impact Network (DINET) is a technology development experiment intended to increase the technical readiness of the JPL implemented ION suite. The DINET Experiment Operations Center (EOC) developed by JPL's Protocol Technology Lab (PTL) was critical in accomplishing the experiment. EOC, containing all end nodes of simulated spaces and one administrative node, exercised publish and subscribe functions for payload data among all end nodes to verify the effectiveness of data exchange over ION protocol stacks. A Monitor and Control System was created and installed on the administrative node as a multi-tiered internet-based Web application to support the Deep Impact Network Experiment by allowing monitoring and analysis of the data delivery and statistics from ION. This Monitor and Control System includes the capability of receiving protocol status messages, classifying and storing status messages into a database from the ION simulation network, and providing web interfaces for viewing the live results in addition to interactive database queries.

Serial Interface through Stream Protocol on EPICS Platform for Distributed Control and Monitoring

NASA Astrophysics Data System (ADS)

Das Gupta, Arnab; Srivastava, Amit K.; Sunil, S.; Khan, Ziauddin

2017-04-01

Remote operation of any equipment or device is implemented in distributed systems in order to control and proper monitoring of process values. For such remote operations, Experimental Physics and Industrial Control System (EPICS) is used as one of the important software tool for control and monitoring of a wide range of scientific parameters. A hardware interface is developed for implementation of EPICS software so that different equipment such as data converters, power supplies, pump controllers etc. could be remotely operated through stream protocol. EPICS base was setup on windows as well as Linux operating system for control and monitoring while EPICS modules such as asyn and stream device were used to interface the equipment with standard RS-232/RS-485 protocol. Stream Device protocol communicates with the serial line with an interface to asyn drivers. Graphical user interface and alarm handling were implemented with Motif Editor and Display Manager (MEDM) and Alarm Handler (ALH) command line channel access utility tools. This paper will describe the developed application which was tested with different equipment and devices serially interfaced to the PCs on a distributed network.

A comparison of methods to assess long-term changes in Sonoran Desert vegetation

USGS Publications Warehouse

Munson, S.M.; Webb, R.H.; Hubbard, J.A.

2011-01-01

Knowledge about the condition of vegetation cover and composition is critical for assessing the structure and function of ecosystems. To effectively quantify the impacts of a rapidly changing environment, methods to track long-term trends of vegetation must be precise, repeatable, and time- and cost-efficient. Measuring vegetation cover and composition in arid and semiarid regions is especially challenging because vegetation is typically sparse, discontinuous, and individual plants are widely spaced. To meet the goal of long-term vegetation monitoring in the Sonoran Desert and other arid and semiarid regions, we determined how estimates of plant species, total vegetation, and soil cover obtained using a widely-implemented monitoring protocol compared to a more time- and resource-intensive plant census. We also assessed how well this protocol tracked changes in cover through 82 years compared to the plant census. Results from the monitoring protocol were comparable to those from the plant census, despite low and variable plant species cover. Importantly, this monitoring protocol could be used as a rapid, "off-the shelf" tool for assessing land degradation (or desertification) in arid and semiarid ecosystems.

Potential for Water Salvage by Release of the Biocontrol Beetle, Diorhabda carinulata, on Tamarisk (Tamarix ramosissima) Dominated Western U.S. Rivers

NASA Astrophysics Data System (ADS)

Murray, R. S.; Nagler, P. L.; van Riper, C.; Bean, D.; Glenn, E. P.

2009-12-01

The biocontrol beetle, Diorhabda carinulata, has been widely released in the upper basin of the Colorado River to control Tamarisk in the western U.S. A primary motivation for beetle release is to salvage water that would otherwise be lost to transpiration by Tamarisk. We summarize preliminary findings of our assessment of tamarisk, beetle and avian phenology and tamarisk water usage. We used the Enhanced Vegetation Index (EVI) from the MODIS sensors on the Terra satellite to evaluate the prospects for water salvage at 15 riparian release sites in Utah, Colorado, Nevada and Wyoming. EVI was combined with meteorological data to estimate evapotranspiration (ET) at the release sites and in adjacent sites to which the beetle might have spread. ET was estimated at 16-day intervals from 2000 to 2008, encompassing pre-release and post-release periods at each site. Baseline ET rates tended to be low, from 2-6 mm d-1 in summer (less than half of potential ET). At 4 of 15 sites, ET rates estimated by MODIS EVI decreased markedly one to two years after release. At other sites, however, no decrease in ET was detected, and ET tended to recover to pre-release levels at affected sites. Ground observations confirmed that beetles were active at all sites following release, defoliating stands of Tamarisk over areas as large as 200 ha. Along approximately 300 km of the Dolores and Colorado Rivers, ground based monitoring of tamarisk defoliation and refoliation was done using hand held GPS units and GIS software. Monitoring here began at the time beetles entered the system in 2004. Selected sites (15 ha) were also monitored for beetle presence and life stage as well as tamarisk condition. Additional ground data collected at four sites on the Dolores River includes vegetation structure, composition and phenology as well as bird monitoring and productivity. The four sites are dominated by saltcedar, with components of willow and cottonwood. For the last 3 years, monthly monitoring of 100 trees at each site were observed for percent flower and leaf, coupled with ratios of green-to-brown needle observations, done from spring green-up to senescence. Bird census data were collected at 100 m radius circular plot stations (n=20) and birds were captured in mist-nets, in which the type and number of birds were reported as birds per net hour. At each location, the results support our past 3 years of findings for the ET seasonally and annually time-series curves as the beetle came into the area and defoliated saltcedar. This study supports phenological observations showing that beetle damage is spotty and localized at most sites, and reduction in ET is confined mainly to July when beetles are actively feeding. However, beetles are still spreading and the eventual fate of Tamarisk stands remains to be determined.

Compilation of 1990 annual reports of the Navy ELF communications system ecological monitoring program. Volume 2: Tabs C thru F

NASA Astrophysics Data System (ADS)

Zapotosky, J. E.

1991-08-01

This portion of the report includes monitoring of and data for arthropoda and earthworms; pollinating insects; and small mammals and nesting birds. During the 1990 growing season the ELF antenna was operated more frequently than in prior years. This provides 2 years of intermittent ELF exposure for the biological systems to react to the radiation, one year of very limited exposure and greater exposure in 1990. Arthropod and earthworm sampling was conducted at intervals of two weeks from early May to late October. High voltage transmission lines and magnetic fields have been shown to affect honeybee reproduction, survival, orientation, and nest structure. ELF EM fields could have similar effects on native megachild bees. Changes in cell length, number of cells per nest, number of leaver per cell, orientation of nest entrances, and time to collect a round leaf pierce to cap a cell were monitored. We have not detected significant changes that could be attributed to ELF EM fields. Small mammal and nesting bird biological studies in the western Upper Peninsula of Michigan for the year 1990 are reported.

Breeding biology of an afrotropical forest understory bird community in northeastern Tanzania

USGS Publications Warehouse

Mkongewa, Victor J.; Newmark, William D.; Stanley, Thomas R.

2013-01-01

Many aspects of the breeding biology of Afrotropical forest birds are poorly known. Here we provide a description based on the monitoring of 1461 active nests over eight breeding seasons about one or more aspects of the breeding biology for 28 coexisting understory bird species on the Amani Plateau in the East Usambara Mountains, Tanzania. Mean nest height and mean distance of nest from forest edge varied widely among species with most species constructing nests across a broad vertical and forest edge to interior gradient. However, there were important exceptions with all sunbird species and several dove and waxbill species constructing nests in close proximity to the forest edge. For 17 common species for which we recorded two or more active nests, mean clutch size across species was 1.9 eggs per clutch, the lowest site-specific mean clutch size yet reported for a tropical forest bird community. For nine bird species, a subset of the 17 common species, length of breeding season, defined as the difference between the earliest and latest recorded incubation onset date, ranged from 88–139 days. Most of these nine species displayed a unimodal distribution in incubation onset dates across a breeding season which extended from the end of August through middle January. In summary, a wide variation exists in most aspects of the breeding biology within an understory forest bird community in the East Usambara Mountains.

Salmonella Surveillance Among Great-Tailed Grackles (Quiscalus mexicanus) and Other Urban Bird Species in Eastern Texas.

PubMed

Grigar, Mary K; Cummings, Kevin J; Rodriguez-Rivera, Lorraine D; Rankin, Shelley C; Johns, Krista; Hamer, Gabriel L; Hamer, Sarah A

2016-12-01

Wild birds may play an important role in maintaining and transmitting Salmonella. Their ability to travel large distances and their proximity to human habitations could make them a vehicle for bridging Salmonella from wild and domestic animals to humans. To determine the potential public health risk presented by urban birds, we investigated the prevalence of Salmonella among great-tailed grackles (Quiscalus mexicanus) and other cohabiting urban bird species. Fecal samples were collected from 114 birds communally roosting in parking lots of retail locations in Brazos County, Texas, from February through July of 2015. Great-tailed grackles and European starlings (Sturnus vulgaris) were the predominant species sampled. Standard bacteriologic culture methods were used to isolate Salmonella from samples, and isolates were characterized by serotyping and antimicrobial susceptibility testing. Overall, 1.8% (2/114) of samples were confirmed positive for Salmonella. Both positive birds were great-tailed grackles sampled in June, yielding a 2.6% (2/76) apparent prevalence among this species. Isolates were serotyped as Salmonella Typhimurium and found to be pan-susceptible based on the National Antimicrobial Resistance Monitoring System (NARMS) panel of antimicrobial agents. The occurrence of Salmonella in great-tailed grackles represents a potential threat to public health, particularly considering their population size and tendency to congregate near human establishments such as grocery stores.

Changes in Physiologic Parameters and Effects of Hooding in Red-tailed Hawks ( Buteo jamaicensis ) During Manual Restraint.

PubMed

Doss, Grayson A; Mans, Christoph

2016-06-01

Manual restraint in birds of prey is required for many veterinary and research procedures. To investigate the effects of handling stress on physiologic parameters in raptorial birds, 8 red-tailed hawks ( Buteo jamaicensis ) were manually restrained over a 15-minute period. Respiratory rate (RR), heart rate (HR), and cloacal temperature were monitored over time and recorded at defined intervals during the experiment. The effect of hooding on physiologic variables was also evaluated in a complete crossover design. Both RR and HR decreased significantly during the 15-minute restraint period (HR, -80 ± 101.4 beats/min [bpm], [P < .01]; RR, -17.5 ± 22.6 breaths/min, [P < .05]). Hooded birds had significantly lower HRs and RRs at 15 minutes of restraint (HR: 232.5 ± 26 bpm, [P < .037]; RR: 33.1 ± 6.7 breaths/min, [P < .05]) compared to birds restrained without a hood (HR: 280 ± 74.1 bpm; RR: 51.5 ± 28.8 breaths/min). Cloacal temperature increased significantly in all manually restrained birds (+2.2 ± 0.7°C, [P < .01]), with a comparable increase in hooded and nonhooded birds. In this study of the effects of manual restraint on red-tailed hawks, hooding versus nonhooding amplified the decrease in HR and RR but had no effect on stress-induced hyperthermia.

Implementation of a sampling strategy to detect West Nile virus in oral and cloacal samples in live song birds.

PubMed

Henning, Jill D; DeGroote, Lucas; Dahlin, Christine R

2015-09-15

In 1999, West Nile virus (WNV) first appeared in the United States and has subsequently infected more than a million people and untold numbers of wildlife. Though primarily an avian virus, WNV can also infect humans and horses. The current status of WNV and its effects on wildlife in Pennsylvania (PA) is sparsely monitored through sporadic testing of dead birds. In order to acquire a more comprehensive understanding of the status of WNV in wild birds, a study was designed and implemented to sample populations of migratory and local birds at Powdermill Nature Reserve near Rector, PA. Resident and migratory bird species totaling 276 individuals were sampled cloacally and orally to compare the effectiveness of sampling methods. The presence of WNV was tested for using RT-PCR. Two positive samples were found, one from a migrating Tennessee warbler and another from an American robin. The low infection rates indicate that WNV may not be a critical conservation concern in the Westmoreland County region of PA. There was also agreement between oral and cloacal swabs, which provides support for both methods. This study describes a surveillance method that is easily incorporated into any banding operation and which determines the risks of WNV to various bird populations. Copyright © 2015 Elsevier B.V. All rights reserved.

Bird Communities of the Arctic Shrub Tundra of Yamal: Habitat Specialists and Generalists

PubMed Central

Sokolov, Vasiliy; Ehrich, Dorothée; Yoccoz, Nigel G.; Sokolov, Alexander; Lecomte, Nicolas

2012-01-01

Background The ratio of habitat generalists to specialists in birds has been suggested as a good indicator of ecosystem changes due to e.g. climate change and other anthropogenic perturbations. Most studies focusing on this functional component of biodiversity originate, however, from temperate regions. The Eurasian Arctic tundra is currently experiencing an unprecedented combination of climate change, change in grazing pressure by domestic reindeer and growing human activity. Methodology/Principal Findings Here we monitored bird communities in a tundra landscape harbouring shrub and open habitats in order to analyse bird habitat relationships and quantify habitat specialization. We used ordination methods to analyse habitat associations and estimated the proportions of specialists in each of the main habitats. Correspondence Analysis identified three main bird communities, inhabiting upland, lowland and dense willow shrubs. We documented a stable structure of communities despite large multiannual variations of bird density (from 90 to 175 pairs/km2). Willow shrub thickets were a hotspot for bird density, but not for species richness. The thickets hosted many specialized species whose main distribution area was south of the tundra. Conclusion/Significance If current arctic changes result in a shrubification of the landscape as many studies suggested, we would expect an increase in the overall bird abundance together with an increase of local specialists, since they are associated with willow thickets. The majority of these species have a southern origin and their increase in abundance would represent a strengthening of the boreal component in the southern tundra, perhaps at the expense of species typical of the subarctic zone, which appear to be generalists within this zone. PMID:23239978

Anticoagulant rodenticide exposure and toxicosis in four species of birds of prey in Massachusetts, USA, 2012-2016, in relation to use of rodenticides by pest management professionals.

PubMed

Murray, Maureen

2017-10-01

Restrictions on second-generation anticoagulant rodenticides (SGARs) in the United States, which were partially implemented in 2011, prohibit the sale of SGAR products through general consumer outlets to minimize use by non-professional or non-agricultural applicators. This study analyzed liver tissue from four species of birds of prey admitted to a wildlife clinic in Massachusetts, USA, from 2012-2016 for residues of anticoagulant rodenticides (ARs). Ninety-four birds were analyzed; 16 were symptomatic for AR toxicosis, and 78 asymptomatic. Ninety-six percent of all birds tested were positive for SGARs: 100% of those diagnosed with AR toxicosis ante-mortem and/or post-mortem and 95% of subclinically exposed birds. Brodifacoum was found in 95% of all birds. Sixty-six percent of all birds contained residues of two or more SGARs. A significant increase in exposures to multiple SGARs occurred in later years in the study. Pesticide use reports (PURs) filed with the Massachusetts Department of Agricultural Resources were reviewed to determine the frequency of use of different ARs by pest management professionals (PMPs) across five years. This study finds that the three SGARs favored by PMPs-bromadiolone, difethialone, brodifacoum-were present in combination in the majority of birds, with increases in multiple exposures driven by increased detections of bromadiolone and difethialone. Continued monitoring of AR residues in nontarget species following full implementation of sales and packaging restrictions in the US is needed in order to elucidate the role of PMP use of SGARs in wildlife exposures and to evaluate the effectiveness of current mitigation measures.

Assessing avian richness in remnant wetlands: Towards an improved methodology

USGS Publications Warehouse

Krzys, Greg; Waite, Thomas A.; Stapanian, Martin; Vucetich, John A.

2002-01-01

Because the North American Breeding Bird Survey provides inadequate coverage of wetland habitat, the Wetland Breeding Bird Survey was recently established in Ohio, USA. This program relies on volunteers to conduct 3 counts at each monitored wetland. Currently, all counts are conducted during the morning. Under the premise that volunteer participation could be increased by allowing evening counts, we evaluated the potential for modifying the methodology. We evaluated the sampling efficiency of all 3-count combinations of morning and evening counts using data collected at 14 wetlands. Estimates of overall species richness decreased with increasing numbers of evening counts. However, this pattern did not hold when analyses were restricted to wetland-dependent species or those of conservation concern. Our findings suggest that it would be reasonable to permit evening counts, particularly if the data are to be used to monitor wetland dependent species and those of concern.