A new species of the genus Dilar Rambur (Neuroptera: Dilaridae) from Borneo

Treesearch

John D. Oswald; Nathan M. Schiff

2001-01-01

Dilar macleodi is described as a new species from lowland rainforest habitat in the Malaysian State of Sarawak on the island of Borneo. Diagnoses are provided to distinguish D. macleodi from the four other dilarid species that have been reported from the peninsula of Indochina or the Malay Archipelago.

Southeast Asian Summer Burning: A Micro Pulse Lidar Network Study of Aerosol Particle Physical Properties near Fires in Borneo and Sumatra

NASA Astrophysics Data System (ADS)

Lolli, S.; Welton, E. J.; Holben, B. N.; Campbell, J. R.

2013-12-01

In August and September 2012, as part of the continuing Seven South East Asian Studies (7-SEAS) project, three autonomous elastic-scattering 355 nm lidars were deployed by the NASA Micro Pulse Lidar Network (MPLNET) to Sumatra and Borneo, measuring the vertical profile of aerosol particle scattering during peak burning season. In coordination with the Aerosol Robotic Network (AERONET), a regional characterization of aerosol particle physical properties and distribution was performed. In addition to a permanent regional network site at Singapore, the three temporary sites established for this research include Jambi (Sumatra, Indonesia), Kuching (northwest Borneo, Malaysia) and Palangkaraya (south-central Borneo, Indonesia). In this paper, we discuss the mission and instruments, and introduce data products available to the community through the MPLNET online website. We further describe initial results of the study, including a contrast of mean vertical scattering profiles versus those observed near active fire sources at Jambi and Palangkaraya, and resolve longer-range particle evolution at receptor sites, like Kuching, that are most commonly 1-2 days downwind of larger fire complexes.

Bartonella and Rickettsia in arthropods from the Lao PDR and from Borneo, Malaysia☆

PubMed Central

Kernif, Tahar; Socolovschi, Cristina; Wells, Konstans; Lakim, Maklarin B.; Inthalad, Saythong; Slesak, Günther; Boudebouch, Najma; Beaucournu, Jean-Claude; Newton, Paul N.; Raoult, Didier; Parola, Philippe

2012-01-01

Rickettsioses and bartonelloses are arthropod-borne diseases of mammals with widespread geographical distributions. Yet their occurrence in specific regions, their association with different vectors and hosts and the infection rate of arthropod-vectors with these agents remain poorly studied in South-east Asia. We conducted entomological field surveys in the Lao PDR (Laos) and Borneo, Malaysia by surveying fleas, ticks, and lice from domestic dogs and collected additional samples from domestic cows and pigs in Laos. Rickettsia felis was detected by real-time PCR with similar overall flea infection rate in Laos (76.6%, 69/90) and Borneo (74.4%, 268/360). Both of the encountered flea vectors Ctenocephalides orientis and Ctenocephalides felis felis were infected with R. felis. The degrees of similarity of partial gltA and ompA genes with recognized species indicate the rickettsia detected in two Boophilus spp. ticks collected from a cow in Laos may be a new species. Isolation and further characterization will be necessary to specify it as a new species. Bartonella clarridgeiae was detected in 3/90 (3.3%) and 2/360 (0.6%) of examined fleas from Laos and Borneo, respectively. Two fleas collected in Laos and one flea collected in Borneo were co-infected with both R. felis and B. clarridgeiae. Further investigations are needed in order to isolate these agents and to determine their epidemiology and aetiological role in unknown fever in patients from these areas. PMID:22153360

Four Decades of Forest Persistence, Clearance and Logging on Borneo

PubMed Central

Gaveau, David L. A.; Sloan, Sean; Molidena, Elis; Yaen, Husna; Sheil, Doug; Abram, Nicola K.; Ancrenaz, Marc; Nasi, Robert; Quinones, Marcela; Wielaard, Niels; Meijaard, Erik

2014-01-01

The native forests of Borneo have been impacted by selective logging, fire, and conversion to plantations at unprecedented scales since industrial-scale extractive industries began in the early 1970s. There is no island-wide documentation of forest clearance or logging since the 1970s. This creates an information gap for conservation planning, especially with regard to selectively logged forests that maintain high conservation potential. Analysing LANDSAT images, we estimate that 75.7% (558,060 km2) of Borneo's area (737,188 km2) was forested around 1973. Based upon a forest cover map for 2010 derived using ALOS-PALSAR and visually reviewing LANDSAT images, we estimate that the 1973 forest area had declined by 168,493 km2 (30.2%) in 2010. The highest losses were recorded in Sabah and Kalimantan with 39.5% and 30.7% of their total forest area in 1973 becoming non-forest in 2010, and the lowest in Brunei and Sarawak (8.4%, and 23.1%). We estimate that the combined area planted in industrial oil palm and timber plantations in 2010 was 75,480 km2, representing 10% of Borneo. We mapped 271,819 km of primary logging roads that were created between 1973 and 2010. The greatest density of logging roads was found in Sarawak, at 0.89 km km−2, and the lowest density in Brunei, at 0.18 km km−2. Analyzing MODIS-based tree cover maps, we estimate that logging operated within 700 m of primary logging roads. Using this distance, we estimate that 266,257 km2 of 1973 forest cover has been logged. With 389,566 km2 (52.8%) of the island remaining forested, of which 209,649 km2 remains intact. There is still hope for biodiversity conservation in Borneo. Protecting logged forests from fire and conversion to plantations is an urgent priority for reducing rates of deforestation in Borneo. PMID:25029192

Four decades of forest persistence, clearance and logging on Borneo.

PubMed

Gaveau, David L A; Sloan, Sean; Molidena, Elis; Yaen, Husna; Sheil, Doug; Abram, Nicola K; Ancrenaz, Marc; Nasi, Robert; Quinones, Marcela; Wielaard, Niels; Meijaard, Erik

2014-01-01

The native forests of Borneo have been impacted by selective logging, fire, and conversion to plantations at unprecedented scales since industrial-scale extractive industries began in the early 1970s. There is no island-wide documentation of forest clearance or logging since the 1970s. This creates an information gap for conservation planning, especially with regard to selectively logged forests that maintain high conservation potential. Analysing LANDSAT images, we estimate that 75.7% (558,060 km2) of Borneo's area (737,188 km2) was forested around 1973. Based upon a forest cover map for 2010 derived using ALOS-PALSAR and visually reviewing LANDSAT images, we estimate that the 1973 forest area had declined by 168,493 km2 (30.2%) in 2010. The highest losses were recorded in Sabah and Kalimantan with 39.5% and 30.7% of their total forest area in 1973 becoming non-forest in 2010, and the lowest in Brunei and Sarawak (8.4%, and 23.1%). We estimate that the combined area planted in industrial oil palm and timber plantations in 2010 was 75,480 km2, representing 10% of Borneo. We mapped 271,819 km of primary logging roads that were created between 1973 and 2010. The greatest density of logging roads was found in Sarawak, at 0.89 km km-2, and the lowest density in Brunei, at 0.18 km km-2. Analyzing MODIS-based tree cover maps, we estimate that logging operated within 700 m of primary logging roads. Using this distance, we estimate that 266,257 km2 of 1973 forest cover has been logged. With 389,566 km2 (52.8%) of the island remaining forested, of which 209,649 km2 remains intact. There is still hope for biodiversity conservation in Borneo. Protecting logged forests from fire and conversion to plantations is an urgent priority for reducing rates of deforestation in Borneo.

Philippine and North Bornean Languages: Issues in Description, Subgrouping, and Reconstruction

ERIC Educational Resources Information Center

Lobel, Jason William

2013-01-01

The Philippines, northern Sulawesi, and northern Borneo are home to two or three hundred languages that can be described as Philippine-type. In spite of nearly five hundred years of language documentation in the Philippines, and at least a century of work in Borneo and Sulawesi, the majority of these languages remain grossly underdocumented, and…

Multiple-scale prediction of forest loss risk across Borneo

Treesearch

Samuel A. Cushman; Ewan A. Macdonald; Erin L. Landguth; Yadvinder Malhi; David W. Macdonald

2017-01-01

Context: The forests of Borneo have among the highest biodiversity and also the highest forest loss rates on the planet. Objectives: Our objectives were to: (1) compare multiple modelling approaches, (2) evaluate the utility of landscape composition and configuration as predictors, (3) assess the influence of the ratio of forest loss and persistence points in the...

Borneocola (Zingiberaceae), a new genus from Borneo.

PubMed

Sam, Yen Yen; Takano, Atsuko; Ibrahim, Halijah; Záveská, Eliška; Aziz, Fazimah

2016-01-01

A new genus from Borneo, Borneocola Y.Y.Sam, is described here. The genus currently contains eight species previously classified as members of the Scaphochlamys Baker. The finding is based on the results of the morphological and molecular studies of Scaphochlamys throughout its geographical range and its closely allied sister groups, Distichochlamys M.F.Newman and Myxochlamys A.Takano & Nagam. Borneocola is nested within the tribe Zingibereae and its monophyly is strongly supported by both ITS and matK sequence data. The genus is characterised by several thin, translucent and marcescent floral bracts, absence of coloured streaks on the labellum and capitate stigma with two dorsal knobs. The genus is distributed in northwest Borneo and all species are very rare and highly endemic.

An annotated checklist of the praying mantises (Mantodea) of Borneo, including the results of the 2008 scientific expedition to Lanjak Entimau Wildlife Sanctuary, Sarawak .

PubMed

Schwarz, Christian J; Konopik, Oliver

2014-05-21

We present the first checklist of praying mantids (Mantodea) of Borneo, with special reference to the specimens collected during the Scientific Expedition to Lanjak Entimau Wildlife Sanctuary 2008. With 118 confirmed species in 56 genera (including subgenera), Borneo is the island with the highest mantodean diversity known to date. In Lanjak Entimau 38 specimens representing 17 genera and 18 species were collected around the station lights and in surrounding secondary and primary forest. A new synonymy in the genus Deroplatys is established. The observed diversity patterns among Bornean mantids are discussed with reference to the biogeographic history of the Sunda Shelf since the Miocene.

A new species of Tropidophorus Duméril & Bibron, 1839 (Squamata: Sauria: Scincidae) from Sarawak, East Malaysia (Borneo).

PubMed

Pui, Yong Min; Karin, Benjamin R; Bauer, Aaron M; Das, Indraneil

2017-05-03

A new species of the genus Tropidophorus is described from Putai, upper Baleh, Kapit districts, Sarawak, East Malaysia (Borneo). Tropidophorus sebi sp. nov. is diagnosable from congeners from Borneo by the combination of the following characters: head shields present, dorsal and lateral scales smooth; parietal scales in two pairs; supraciliaries eight; supraoculars four; supralabials seven; infralabials four; postmental undivided; longitudinal scale rows 58; ventrals 53; transverse scale rows at midbody 34; subcaudals 98; preanals enlarged, single; and subdigital lamellae of Toe IV 19. In addition, we determine the phylogenetic position of this species within the Tropidophorus group based on mitochondrial markers, and present a key to identification of the known Bornean species in the genus.

Is the Role of Insular South East Asia as a Global Producer of Sediments Overestimated? Clues from Borneo

NASA Astrophysics Data System (ADS)

Latrubesse, E. M.; Park, E.; Aquino, S.

2017-12-01

Global studies have ascertained that relatively small drainage basins of Sumatra, Java, Borneo, Celebes, and Timor, which represent only 2% of the land draining to the ocean, may discharge about 4200 million tons/y of sediment. It means approximately 25% of the global sediment export to the ocean (Milliman and Farnsworth, 2013). With an area of 750,000 km2, Borneo, the 3rdlargest island in the world (after Greenland and New Guinea) could export from to the ocean approximately 910 Mt/y. About half (459 Mt) of the island discharge is from rivers draining Sarawak (Malaysia) to the South China Sea; while the other half (450 Mt) drain Kalimantan to the Java, Makassar Strait, and Celebes Seas (Milliman and Farnsworth, 2013). However, direct measurements of suspended sediments in Borneo are not available and the calculations of sediment yields and transferences to the ocean have been based on probabilistic curves. We hypothesize that the available data on the volume of sediment discharge are overestimated. We provide evidences that support our hypothesis through geological/geomorphological mappings, fluvial surveys, suspended sediment samplings, analyses on the channel stability of major rivers, and surface suspended sediments concentration modelling (SSSC) of river plumes in the coastal zone. Our initial assessments on sediment budget indicates that Borneo could produce and supply to the Ocean significantly less sediment than previously estimated by other authors. ReferencesMilliman and Farnsworth (2013), Appendix F (Asia) and G (Oceania), In River discharge to the coastal ocean, 289-329.

Telosticta fugispinosa sp. nov. from Sabah (Odonata: Zygoptera: Platystictidae).

PubMed

Dow, Rory A; Afendy, Aqilah; Rahman, Homathevi

2016-04-14

Telosticta fugispinosa sp. nov. (holotype male, from Borneo, Sabah, West Coast division, Crocker Range National Park, Inobong, Kimamabang waterfall stream system, 21 ix 2012, deposited in RMNH) is described from Kinabalu National Park and Crocker Range National Park in Sabah, Malaysian Borneo. It is distinguished from all other species of Telosticta by the form of the male anal appendages.

Forest loss and Borneo’s climate

NASA Astrophysics Data System (ADS)

McAlpine, Clive A.; Johnson, Alex; Salazar, Alvaro; Syktus, Jozef; Wilson, Kerrie; Meijaard, Erik; Seabrook, Leonie; Dargusch, Paul; Nordin, Haziq; Sheil, Douglas

2018-04-01

The equatorial island of Borneo is a deforestation hotspot. However, the influence of forest loss on the island’s climate remains largely unexplored. Here, we examine how forest loss is related to changes in ground-based records of temperature (1961–2007) and precipitation (1951–2007), and MODIS data for temperature (2002–2016). Analyses were performed for the entire island, lowland areas (<200 m ASL), and nine selected watersheds. We found a strong island-wide relationship between forest loss and increases in daily temperature and reductions in daily precipitation. The relationship between deforestation and changes in local climate was most pronounced for watersheds in southeast Borneo, which have lost 40%–75% of their forests since 1973. These watersheds also had a significantly higher frequency of temperatures above 31 °C. Watersheds in north and northwest Borneo, which have lost 5%–25% of their forest cover, maintained a more stable climate with a similar distribution of mean and extreme warm temperatures between forest and modified forest areas. Watersheds with >15% forest loss had a >15% reduction in rainfall. We conclude that loss of forest in Borneo has increased local daily temperatures and temperature extremes, and reduced daily precipitation.

Landscape Characteristics of Oriental Honey Buzzards Wintering in Western Part of Flores Island Based on Satellite-Tracking Data

NASA Astrophysics Data System (ADS)

Syartinilia; Farisi, G. H. Al; Higuchi, H.

2017-10-01

Oriental Honey Buzzards (OHBs, Pernis ptilorhynchus) are migratory raptor that has been satellite-tracked since 2003. Some islands in Indonesia which are used for wintering habitat are Flores and Borneo. However, both islands have different characteristics of climate and land cover. The objectives of this research were to analyze the landscape characteristic of the OHBs wintering habitat in western Flores, and to subsequently compare landscape characteristic of the OHBs wintering habitat in Borneo. Landscape habitat characteristics were analyzed using Principal Component Analysis (PCA) combined with GIS and then compared to the previous study in Borneo Island. The result showed that the first of six principal components explained 79.14% and 77.59% of the observed variation in landscape characteristics of both core and edge habitats, subsequently. Habitat selection by OHBs at wintering site was influenced by the availability of thermal wind and food. Savannah was identified as the main landscape characteristic that was different between wintering habitat in Flores and Borneo. Savannah is well-known as a habitat for many species of amphibians, reptiles, and small mammals so that it can be a hunting area that provide alternative feed for OHBs.

Indo-Pacific Humpback Dolphins in Borneo: A Review of Current Knowledge with Emphasis on Sarawak.

PubMed

Minton, Gianna; Zulkifli Poh, Anna Norliza; Peter, Cindy; Porter, Lindsay; Kreb, Danielle

2016-01-01

Indo-Pacific humpback dolphins (Sousa chinensis) are documented from various locations along Borneo's coast, including three sites in Sarawak, Malaysia, three sites in Sabah, Malaysia, three locations in Kalimantan, Indonesia and the limited coastal waters of the Sultanate of Brunei. Observations in all these areas indicate a similar external morphology, which seems to fall somewhere between that documented for Chinese populations known as S. chinensis, and that of Sousa sahulensis in Australia and Papua New Guinea. Sightings occur in shallow nearshore waters, often near estuaries and river mouths, and associations with Irrawaddy dolphins (Orcaella brevirostris) are frequently documented. Population estimates exist for only two locations and sightings information throughout Borneo indicates that frequency of occurrence is rare and group size is usually small. Threats from fisheries by-catch and coastal development are present in many locations and there are concerns over the ability of these small and fragmented populations to survive. The conservation and taxonomic status of humpback dolphins in Borneo remain unclear, and there are intriguing questions as to where these populations fit in our evolving understanding of the taxonomy of the genus. © 2016 Elsevier Ltd. All rights reserved.

Abundance and distribution of sylvatic dengue virus vectors in three different land cover types in Sarawak, Malaysian Borneo.

PubMed

Young, Katherine I; Mundis, Stephanie; Widen, Steven G; Wood, Thomas G; Tesh, Robert B; Cardosa, Jane; Vasilakis, Nikos; Perera, David; Hanley, Kathryn A

2017-08-31

Mosquito-borne dengue virus (DENV) is maintained in a sylvatic, enzootic cycle of transmission between canopy-dwelling non-human primates and Aedes mosquitoes in Borneo. Sylvatic DENV can spill over into humans living in proximity to forest foci of transmission, in some cases resulting in severe dengue disease. The most likely vectors of such spillover (bridge vectors) in Borneo are Ae. albopictus and Ae. niveus. Borneo is currently experiencing extensive forest clearance. To gauge the effect of this change in forest cover on the likelihood of sylvatic DENV spillover, it is first necessary to characterize the distribution of bridge vectors in different land cover types. In the current study, we hypothesized that Ae. niveus and Ae. albopictus would show significantly different distributions in different land cover types; specifically, we predicted that Ae. niveus would be most abundant in forests whereas Ae. albopictus would have a more even distribution in the landscape. Mosquitoes were collected from a total of 15 sites using gravid traps and a backpack aspirator around Kampong Puruh Karu, Sarawak, Malaysian Borneo, where sylvatic DENV spillover has been documented. A total of 2447 mosquitoes comprising 10 genera and 4 species of Aedes, were collected over the three years, 2013, 2014 and 2016, in the three major land cover types in the area, homestead, agriculture and forest. Mosquitoes were identified morphologically, pooled by species and gender, homogenized, and subject to DNA barcoding of each Aedes species and to arbovirus screening. As predicted, Ae. niveus was found almost exclusively in forests whereas Ae. albopictus was collected in all land cover types. Aedes albopictus was significantly (P = 0.04) more abundant in agricultural fields than forests. Sylvatic DENV was not detected in any Aedes mosquito pools, however genomes of 14 viruses were detected using next generation sequencing. Land cover type affects the abundance and distribution of the most likely bridge vectors of sylvatic DENV in Malaysia Borneo. Conversion of forests to agriculture will likely decrease the range and abundance of Ae. niveus but enhance the abundance of Ae. albopictus.

Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae)

PubMed Central

Gardner, Elliot M.; Harris, Robert; Chaveerach, Arunrat; Pereira, Joan T.

2017-01-01

Abstract Background and Aims The breadfruit genus (Artocarpus, Moraceae) includes valuable underutilized fruit tree crops with a centre of diversity in Southeast Asia. It belongs to the monophyletic tribe Artocarpeae, whose only other members include two small neotropical genera. This study aimed to reconstruct the phylogeny, estimate divergence dates and infer ancestral ranges of Artocarpeae, especially Artocarpus, to better understand spatial and temporal evolutionary relationships and dispersal patterns in a geologically complex region. Methods To investigate the phylogeny and biogeography of Artocarpeae, this study used Bayesian and maximum likelihood approaches to analyze DNA sequences from six plastid and two nuclear regions from 75% of Artocarpus species, both neotropical Artocarpeae genera, and members of all other Moraceae tribes. Six fossil-based calibrations within the Moraceae family were used to infer divergence times. Ancestral areas and estimated dispersal events were also inferred. Key Results Artocarpeae, Artocarpus and four monophyletic Artocarpus subgenera were well supported. A late Cretaceous origin of the Artocarpeae tribe in the Americas is inferred, followed by Eocene radiation of Artocarpus in Asia, with the greatest diversification occurring during the Miocene. Borneo is reconstructed as the ancestral range of Artocarpus, with dozens of independent in situ diversification events inferred there, as well as dispersal events to other regions of Southeast Asia. Dispersal pathways of Artocarpus and its ancestors are proposed. Conclusions Borneo was central in the diversification of the genus Artocarpus and probably served as the centre from which species dispersed and diversified in several directions. The greatest amount of diversification is inferred to have occurred during the Miocene, when sea levels fluctuated and land connections frequently existed between Borneo, mainland Asia, Sumatra and Java. Many species found in these areas have extant overlapping ranges, suggesting that sympatric speciation may have occurred. By contrast, Artocarpus diversity east of Borneo (where many of the islands have no historical connections to the landmasses of the Sunda and Sahul shelves) is unique and probably the product of over water long-distance dispersal events and subsequent diversification in allopatry. This work represents the most comprehensive Artocarpus phylogeny and biogeography study to date and supports Borneo as an evolutionary biodiversity hotspot. PMID:28073771

Clouded leopard phylogeny revisited: support for species recognition and population division between Borneo and Sumatra

PubMed Central

Wilting, Andreas; Buckley-Beason, Valerie A; Feldhaar, Heike; Gadau, Jürgen; O'Brien, Stephen J; Linsenmair, K Eduard

2007-01-01

Background The clouded leopard (Neofelis nebulosa) is one of the least known cat species and depletion of their forested habitats puts it under heavy pressure. Recently reclassification of Bornean clouded leopards (N. nebulosa diardi) to species level (N.diardi) was suggested based on molecular and morphological evidence. Since the genetic results were based solely on three Bornean samples we re-evaluated this partition using additional samples of Bornean clouded leopards (N = 7) and we were also able to include specimens from Sumatra (N = 3), which were lacking in previous analysis. Results We found strong support for the distinction between N. nebulosa and N. diardi based on three fragments of mtDNA (900 bp) and 18 microsatellites. Forty-one fixed mitochondrial nucleotide differences and non-overlapping allele sizes in 8 of 18 microsatellite loci distinguished N. nebulosa and N. diardi. This is equivalent to the genetic divergence among recognized species in the genus Panthera. Sumatran clouded leopards clustered with specimens from Borneo, suggesting that Sumatran individuals also belong to N. diardi. Additionally, a significant population subdivision was apparent among N. diardi from Sumatra and Borneo based on mtDNA and microsatellite data. Conclusion Referring to their origin on two Sunda Islands we propose to give N. diardi the common name "Sundaland clouded leopard". The reduced gene flow between Borneo and Sumatra might suggest the recognition of two subspecies of N. diardi. Based on this reclassification of clouded leopards not only species, but also the populations on Borneo and Sumatra should be managed separately and a higher priority should be placed to protect the different populations from extinction. PMID:17535420

Intensification through diversified resource use: the human ecology of a successful agricultural industry in Indonesian Borneo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vondal, P.J.

1987-03-01

The success of an agricultural industry in commercial duck egg production in the swamplands of South Kalimantan (Borneo) is examined through the utilization of a human ecology framework. Seasonality of resource availability and human population growth are identified as two major constraints to production faced by farmers. Population increases in the urban sectors of southeastern Borneo also present economic opportunities for farmers because of the growing demand for poultry products. Farmers have responded by developing an intensification strategy in egg production based on the use of diversified resources for duck feed. The long-term consequences of these and other innovations inmore » duck farming are discussed; and diversity-stability theory is examined for its applicability to this case of agricultural development and for rural development theory and practice.« less

Three new species of Grouvellinus Champion, 1923 from Maliau Basin, Sabah, Borneo, discovered by citizen scientists during the first Taxon Expedition (Insecta, Coleoptera, Elmidae)

PubMed Central

Freitag, Hendrik; Pangantihon, Clister V.; Njunjić, Iva

2018-01-01

Abstract Further results are presented of the first field course at Maliau Basin, Malaysian Borneo organized by Taxon Expeditions, an organization which enables citizen scientists to be directly involved in taxonomic discoveries. Three new species of the aquatic beetle genus Grouvellinus Champion, 1923, namely G. leonardodicaprioi sp. n., G. andrekuipersi sp. n., and G. quest sp. n. were collected jointly by the citizen scientists and taxonomists during the fieldwork in Maliau Basin. Material was mainly sampled from sandstone bottom rocks of blackwater streams at altitudes between 900 m and 1,000 m using fine-meshed hand-nets. The genus is widely distributed in the Oriental and Palearctic regions, but these are the first records from the island of Borneo. PMID:29740222

Major Land Clearing Fires, Kalimantan, Borneo, Indonesia

NASA Technical Reports Server (NTRS)

1991-01-01

These many and intense land clearing fires in the Kalimantan region of the island of Borneo, Indonesia (3.5S, 113.5E) are indicative of the many deforestation activities on a worldwide scale. In order to feed and house ever increasing populations, more cleared land is required for agriculture to feed ever increasing populations. More pasture lands are needed for livestock. And, more cleared lands are needed for housing.

Borneo vortex and meso-scale convective rainfall

NASA Astrophysics Data System (ADS)

Koseki, S.; Koh, T.-Y.; Teo, C.-K.

2013-08-01

We have investigated how the Borneo vortex develops over the equatorial South China Sea under cold surge conditions in December during the Asian winter monsoon. Composite analysis using reanalysis and satellite datasets has revealed that absolute vorticity and water vapour are transported by strong cold surges from upstream of the South China Sea to around the equator. Rainfall is correspondingly enhanced over the equatorial South China Sea. A semi-idealized experiment reproduced the Borneo vortex over the equatorial South China Sea during a "perpetual" cold surge. The Borneo vortex is manifested as a meso-α cyclone with a comma-shaped rainband in the northeast sector of the cyclone. Vorticity budget analysis showed that the growth of the meso-α cyclone was achieved mainly by vortex stretching. The comma-shaped rainband consists of clusters of meso-β scale rainfall patches. The warm and wet cyclonic southeasterly flow meets with the cold and dry northeasterly surge forming a confluence front in the northeastern sector of the cyclone. Intense upward motion and heavy rainfall result both due to the low-level convergence and the favourable thermodynamic profile at the confluence front. At both meso-α and meso-β scales, the convergence is ultimately caused by the deviatoric strain in the confluence wind pattern but is much enhanced by nonlinear self-enhancement dynamics.

Low energy, low latitude wave-dominated shallow marine depositional systems: examples from northern Borneo

NASA Astrophysics Data System (ADS)

Lambiase, Joseph J.; Suraya Tulot

2013-12-01

The depositional environments of the wave-dominant successions in the middle to late Miocene Belait and Sandakan Formations in northwestern and northern Borneo, respectively, were determined based on grain size distributions, sedimentary structures and facies successions, as well as trace and microfossil assemblages. Generally, progradational shoreface successions in the Belait Formation were deposited in very low wave energy environments where longshore currents were too weak to generate trough cross-bedding. Shoreface sands are laterally continuous for several km and follow the basin contours, suggesting attached beaches similar to the modern Brunei coastline. In contrast, trough cross-bedding is common in the coarser Sandakan Formation and back-barrier mangrove swamp deposits cap the progradational succession as on the modern northern Dent Peninsula coastline, indicating barrier development and higher wave energy conditions than in the Belait Formation. The Borneo examples indicate that barrier systems that include significant tidal facies form under higher wave energy conditions than attached beaches with virtually no tidal facies. Also, Borneo's low latitude climate promotes back-barrier mangrove which reduces tidal exchange and reduces tidal influence relative to comparable temperate climate systems. The results of the study indicate that depositional systems on low energy, wave-dominated coasts are highly variable, as are the sand bodies and facies associations they generate.

Three Divergent Subpopulations of the Malaria Parasite Plasmodium knowlesi

PubMed Central

Lin, Lee C.; Rovie-Ryan, Jeffrine J.; Kadir, Khamisah A.; Anderios, Fread; Hisam, Shamilah; Sharma, Reuben S.K.; Singh, Balbir; Conway, David J.

2017-01-01

Multilocus microsatellite genotyping of Plasmodium knowlesi isolates previously indicated 2 divergent parasite subpopulations in humans on the island of Borneo, each associated with a different macaque reservoir host species. Geographic divergence was also apparent, and independent sequence data have indicated particularly deep divergence between parasites from mainland Southeast Asia and Borneo. To resolve the overall population structure, multilocus microsatellite genotyping was conducted on a new sample of 182 P. knowlesi infections (obtained from 134 humans and 48 wild macaques) from diverse areas of Malaysia, first analyzed separately and then in combination with previous data. All analyses confirmed 2 divergent clusters of human cases in Malaysian Borneo, associated with long-tailed macaques and pig-tailed macaques, and a third cluster in humans and most macaques in peninsular Malaysia. High levels of pairwise divergence between each of these sympatric and allopatric subpopulations have implications for the epidemiology and control of this zoonotic species. PMID:28322705

Red hot chili pepper. A new Calluella stoliczka, 1872 (Lissamphibia: Anura: Microhylidae) from Sarawak, East Malaysia (Borneo).

PubMed

Das, Indraneil; Min, Pui Yong; Hsu, Wayne W; Hertwig, Stefan T; Haas, Alexander

2014-04-07

A new brightly-coloured (olive and red) species of microhylid frog of the genus Calluella Stoliczka 1872 is described from the upper elevations of Gunung Penrissen and the Matang Range, Sarawak, East Malaysia (Borneo). Calluella capsa, new species, is diagnosable in showing the following combination of characters: SVL up to 36.0 mm; dorsum weakly granular; a faint dermal fold across forehead; toe tips obtuse; webbing on toes basal; lateral fringes on toes present; outer metatarsal tubercle present; and dorsum greyish-olive, with red spots; half of venter bright red, the rest with large white and dark areas. The new species is the eighth species of Calluella to be described, and the fourth known from Borneo. A preliminary phylogeny of Calluella and its relatives is presented, and the new taxon compared with congeners from Malaysia and other parts of south-east Asia. 

Cretaceous crust beneath SW Borneo: U-Pb dating of zircons from metamorphic and granitic rocks

NASA Astrophysics Data System (ADS)

Davies, L.; Hall, R.; Armstrong, R.

2012-12-01

Metamorphic basement rocks from SW Borneo are undated but have been suggested to be Palaeozoic. This study shows they record low pressure 'Buchan-type' metamorphism and U-Pb SHRIMP dating of zircons indicates a mid-Cretaceous (volcaniclastic) protolith. SW Borneo is the southeast promontory of Sundaland, the continental core of SE Asia. It has no sedimentary cover and the exposed basement has been widely assumed to be a crustal fragment from the Indochina-China margin. Metamorphic rocks of the Pinoh Group in Kalimantan (Indonesian Borneo) are intruded by granitoid rocks of Jurassic-Cretaceous age, based on K-Ar dating, suggesting emplacement mainly between 130 and 80 Ma. The Pinoh metamorphic rocks have been described as a suite of pelitic schists, slates, phyllites, and hornfelses, and have not been dated, although they have been correlated with rocks elsewhere in Borneo of supposed Palaeozoic age. Pelitic schists contain biotite, chlorite, cordierite, andalusite, quartz, plagioclase and in some cases high-Mn almandine-rich garnet. Many have a shear fabric associated with biotite and fibrolite intergrowth. Contact metamorphism due to intrusion of the granitoid rocks produced hornfelses with abundant andalusite and cordierite porphyroblasts. Granitoids range from alkali-granite to tonalite and contain abundant hornblende and biotite, with rare white mica. Zircons from granitoid rocks exhibit sector- and concentric- zoning; some have xenocrystic cores mantled by magmatic zircon. There are four important age populations at c. 112, 98, 84 and 84 Ma broadly confirming earlier dating studies. There is a single granite body with a Jurassic age (186 ± 2.3 Ma). Zircons from pelitic metamorphic rocks are typically euhedral, with no evidence of rounding or resorbing of grains; a few preserve volcanic textures. They record older ages than those from igneous rocks; U-Pb ages are Cretaceous with a major population between 134 and 110 Ma. A single sample contains Proterozoic and Phanerozoic zircons. The metamorphic rocks from SW Borneo are not an ancient core to the island as previously assumed. We propose that extensive arc volcanism produced fine grained volcanogenic sediments during the Early Cretaceous deposited on, or reworking, older crust. These sediments were subjected to low pressure 'Buchan-type' metamorphism soon after deposition. Magmatism continued into the Late Cretaceous, resulting in contact metamorphism.

Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae).

PubMed

Williams, Evelyn W; Gardner, Elliot M; Harris, Robert; Chaveerach, Arunrat; Pereira, Joan T; Zerega, Nyree J C

2017-03-01

The breadfruit genus ( Artocarpus , Moraceae) includes valuable underutilized fruit tree crops with a centre of diversity in Southeast Asia. It belongs to the monophyletic tribe Artocarpeae, whose only other members include two small neotropical genera. This study aimed to reconstruct the phylogeny, estimate divergence dates and infer ancestral ranges of Artocarpeae, especially Artocarpus , to better understand spatial and temporal evolutionary relationships and dispersal patterns in a geologically complex region. To investigate the phylogeny and biogeography of Artocarpeae, this study used Bayesian and maximum likelihood approaches to analyze DNA sequences from six plastid and two nuclear regions from 75% of Artocarpus species, both neotropical Artocarpeae genera, and members of all other Moraceae tribes. Six fossil-based calibrations within the Moraceae family were used to infer divergence times. Ancestral areas and estimated dispersal events were also inferred. Artocarpeae, Artocarpus and four monophyletic Artocarpus subgenera were well supported. A late Cretaceous origin of the Artocarpeae tribe in the Americas is inferred, followed by Eocene radiation of Artocarpus in Asia, with the greatest diversification occurring during the Miocene. Borneo is reconstructed as the ancestral range of Artocarpus , with dozens of independent in situ diversification events inferred there, as well as dispersal events to other regions of Southeast Asia. Dispersal pathways of Artocarpus and its ancestors are proposed. Borneo was central in the diversification of the genus Artocarpus and probably served as the centre from which species dispersed and diversified in several directions. The greatest amount of diversification is inferred to have occurred during the Miocene, when sea levels fluctuated and land connections frequently existed between Borneo, mainland Asia, Sumatra and Java. Many species found in these areas have extant overlapping ranges, suggesting that sympatric speciation may have occurred. By contrast, Artocarpus diversity east of Borneo (where many of the islands have no historical connections to the landmasses of the Sunda and Sahul shelves) is unique and probably the product of over water long-distance dispersal events and subsequent diversification in allopatry. This work represents the most comprehensive Artocarpus phylogeny and biogeography study to date and supports Borneo as an evolutionary biodiversity hotspot. © The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com

National Intelligence Survey. British Borneo, Section 23, Weather and Climate

DTIC Science & Technology

1962-03-01

termed the autumn intermonsoon season. 2. Climatic controls The climate of British Borneo is primarily de - termined by the position of the large...temperature is near 0° F. ( — 18° C.) the year round and continues to de - crease with increasing altitude to approximately 55,000 feet, where it...below freezing. The actual rate of ice accretion de - creases with decreasing temperature. When air temperatures approach 0° F. ( — 18° C), the icing

The atmospheric chemistry of trace gases and particulate matter emitted by different land uses in Borneo

PubMed Central

MacKenzie, A. R.; Langford, B.; Pugh, T. A. M.; Robinson, N.; Misztal, P. K.; Heard, D. E.; Lee, J. D.; Lewis, A. C.; Jones, C. E.; Hopkins, J. R.; Phillips, G.; Monks, P. S.; Karunaharan, A.; Hornsby, K. E.; Nicolas-Perea, V.; Coe, H.; Gabey, A. M.; Gallagher, M. W.; Whalley, L. K.; Edwards, P. M.; Evans, M. J.; Stone, D.; Ingham, T.; Commane, R.; Furneaux, K. L.; McQuaid, J. B.; Nemitz, E.; Seng, Yap Kok; Fowler, D.; Pyle, J. A.; Hewitt, C. N.

2011-01-01

We report measurements of atmospheric composition over a tropical rainforest and over a nearby oil palm plantation in Sabah, Borneo. The primary vegetation in each of the two landscapes emits very different amounts and kinds of volatile organic compounds (VOCs), resulting in distinctive VOC fingerprints in the atmospheric boundary layer for both landscapes. VOCs over the Borneo rainforest are dominated by isoprene and its oxidation products, with a significant additional contribution from monoterpenes. Rather than consuming the main atmospheric oxidant, OH, these high concentrations of VOCs appear to maintain OH, as has been observed previously over Amazonia. The boundary-layer characteristics and mixing ratios of VOCs observed over the Borneo rainforest are different to those measured previously over Amazonia. Compared with the Bornean rainforest, air over the oil palm plantation contains much more isoprene, monoterpenes are relatively less important, and the flower scent, estragole, is prominent. Concentrations of nitrogen oxides are greater above the agro-industrial oil palm landscape than over the rainforest, and this leads to changes in some secondary pollutant mixing ratios (but not, currently, differences in ozone). Secondary organic aerosol over both landscapes shows a significant contribution from isoprene. Primary biological aerosol dominates the super-micrometre aerosol over the rainforest and is likely to be sensitive to land-use change, since the fungal source of the bioaerosol is closely linked to above-ground biodiversity. PMID:22006961

Population structure and demographic history of a tropical lowland rainforest tree species Shorea parvifolia (Dipterocarpaceae) from Southeastern Asia.

PubMed

Iwanaga, Hiroko; Teshima, Kosuke M; Khatab, Ismael A; Inomata, Nobuyuki; Finkeldey, Reiner; Siregar, Iskandar Z; Siregar, Ulfah J; Szmidt, Alfred E

2012-07-01

Distribution of tropical rainforests in Southeastern Asia has changed over geo-logical time scale, due to movement of tectonic plates and/or global climatic changes. Shorea parvifolia is one of the most common tropical lowland rainforest tree species in Southeastern Asia. To infer population structure and demographic history of S. parvifolia, as indicators of temporal changes in the distribution and extent of tropical rainforest in this region, we studied levels and patterns of nucleotide polymorphism in the following five nuclear gene regions: GapC, GBSSI, PgiC, SBE2, and SODH. Seven populations from peninsular Malaysia, Sumatra, and eastern Borneo were included in the analyses. STRUCTURE analysis revealed that the investigated populations are divided into two groups: Sumatra-Malay and Borneo. Furthermore, each group contained one admixed population. Under isolation with migration model, divergence of the two groups was estimated to occur between late Pliocene (2.6 MYA) and middle Pleistocene (0.7 MYA). The log-likelihood ratio tests of several demographic models strongly supported model with population expansion and low level of migration after divergence of the Sumatra-Malay and Borneo groups. The inferred demographic history of S. parvifolia suggested the presence of a scarcely forested land bridge on the Sunda Shelf during glacial periods in the Pleistocene and predominance of tropical lowland rainforest at least in Sumatra and eastern Borneo.

U-Pb Detrital Zircon Ages from Sarawak: Changes in Provenance Reflecting the Tectonic Evolution of Southeast Asia

NASA Astrophysics Data System (ADS)

Breitfeld, H. T.; Galin, T.; Hall, R.

2014-12-01

Sarawak is located on the northern edge of Sundaland in NW Borneo. Five sedimentary basins are distinguished with ages from Triassic to Cenozoic. New light mineral, heavy mineral and U-Pb detrital zircon ages show differences in provenance reflecting the tectonic evolution of the region. The oldest clastic sediments are Triassic of the Sadong-Kuching Basin and were sourced by a Carnian to Norian volcanic arc and erosion of Cathaysian rocks containing zircons of Paleoproterozoic age. Sandstones of the Upper Jurassic to Cretaceous Bau-Pedawan Basin have distinctive zircon populations indicating a major change of tectonic setting, including initiation of subduction below present-day West Sarawak in the Late Jurassic. A wide range of inherited zircon ages indicates various Cathaysian fragments as major source areas and the arrival of the SW Borneo Block following subduction beneath the Schwaner Mountains in the early Late Cretaceous. After collision of the SW Borneo Block and the microcontinental fragments with Sundaland in the early Late Cretaceous, deep marine sedimentation (Pedawan Formation) ceased, and there was uplift forming the regional Pedawan-Kayan unconformity. Two episodes of extension were responsible for basin development on land from the latest Cretaceous onwards, probably in a strike-slip setting. The first episode formed the Kayan Basin in the Latest Cretaceous (Maastrichtian) to Early Paleocene, and the second formed the Ketungau Basin and the Penrissen Sandstone in the Middle to Late Eocene. Zircons indicate nearby volcanic activity throughout the Early Cenozoic in NW Borneo. Inherited zircon ages indicate an alternation between Borneo and Tin Belt source rocks. A large deep marine basin, the Rajang Basin, formed north of the Lupar Line fault. Zircons from sediments of the Rajang Basin indicate they are of similar age and provenance as the contemporaneous terrestrial sediments to the south suggesting a narrow steep continental Sundaland margin at the position of the Lupar Line.

A Hidden Treasure: The Borneo Mistletoes

PubMed Central

Lim, Ya Chee; Rajabalaya, Rajan; David, Sheba Rani

2017-01-01

The European mistletoe, Viscum album, is the most common consumed adjuvant among cancer patients in Europe. Its success warrants a report on three most apparent mistletoes found in Borneo Island, namely Scurrula ferruginea, Macrosolen cochinchinensis, and Dendrophthoe curvata. The traditional and pharmacological uses of these mistletoes include antibacterial, anticancer, antiviral, antihypertensive, antioxidative, and cytotoxic effects. Phytochemicals such as flavonols, alkaloids, tannins, and gallic acid have been reported in one of these mistletoes. This review discusses the potential of these mistletoes as therapeutic agents. PMID:28989251

The identity of the semiterrestrial crab Terrathelphusa kuchingensis (Nobili, 1901) (Crustacea: Decapoda: Brachyura: Gecarcinucidae), with descriptions of four new species from southwestern Sarawak, Borneo, Malaysia.

PubMed

Grinang, Jongkar; Ng, Peter K L

2015-04-10

Four new species of semiterrestrial gecarcinucid crabs are described from limestone and sandstone habitats in southwestern Sarawak, Malaysia: Terrathelphusa aglaia n. sp., T. cerina n. sp., T. kundong n. sp., and T. mas n. sp. The taxonomy of T. kuchingensis (Nobili, 1901) is discussed, its precise identity ascertained from fresh material, and its actual distribution determined. This increases the number of Terrathelphusa species in Borneo to eight.

Long-term carbon sink in Borneo's forests halted by drought and vulnerable to edge effects.

PubMed

Qie, Lan; Lewis, Simon L; Sullivan, Martin J P; Lopez-Gonzalez, Gabriela; Pickavance, Georgia C; Sunderland, Terry; Ashton, Peter; Hubau, Wannes; Abu Salim, Kamariah; Aiba, Shin-Ichiro; Banin, Lindsay F; Berry, Nicholas; Brearley, Francis Q; Burslem, David F R P; Dančák, Martin; Davies, Stuart J; Fredriksson, Gabriella; Hamer, Keith C; Hédl, Radim; Kho, Lip Khoon; Kitayama, Kanehiro; Krisnawati, Haruni; Lhota, Stanislav; Malhi, Yadvinder; Maycock, Colin; Metali, Faizah; Mirmanto, Edi; Nagy, Laszlo; Nilus, Reuben; Ong, Robert; Pendry, Colin A; Poulsen, Axel Dalberg; Primack, Richard B; Rutishauser, Ervan; Samsoedin, Ismayadi; Saragih, Bernaulus; Sist, Plinio; Slik, J W Ferry; Sukri, Rahayu Sukmaria; Svátek, Martin; Tan, Sylvester; Tjoa, Aiyen; van Nieuwstadt, Mark; Vernimmen, Ronald R E; Yassir, Ishak; Kidd, Petra Susan; Fitriadi, Muhammad; Ideris, Nur Khalish Hafizhah; Serudin, Rafizah Mat; Abdullah Lim, Layla Syaznie; Saparudin, Muhammad Shahruney; Phillips, Oliver L

2017-12-19

Less than half of anthropogenic carbon dioxide emissions remain in the atmosphere. While carbon balance models imply large carbon uptake in tropical forests, direct on-the-ground observations are still lacking in Southeast Asia. Here, using long-term plot monitoring records of up to half a century, we find that intact forests in Borneo gained 0.43 Mg C ha -1 per year (95% CI 0.14-0.72, mean period 1988-2010) above-ground live biomass. These results closely match those from African and Amazonian plot networks, suggesting that the world's remaining intact tropical forests are now en masse out-of-equilibrium. Although both pan-tropical and long-term, the sink in remaining intact forests appears vulnerable to climate and land use changes. Across Borneo the 1997-1998 El Niño drought temporarily halted the carbon sink by increasing tree mortality, while fragmentation persistently offset the sink and turned many edge-affected forests into a carbon source to the atmosphere.

Contrasting Linguistic and Genetic Origins of the Asian Source Populations of Malagasy

PubMed Central

Kusuma, Pradiptajati; Brucato, Nicolas; Cox, Murray P.; Pierron, Denis; Razafindrazaka, Harilanto; Adelaar, Alexander; Sudoyo, Herawati; Letellier, Thierry; Ricaut, François-Xavier

2016-01-01

The Austronesian expansion, one of the last major human migrations, influenced regions as distant as tropical Asia, Remote Oceania and Madagascar, off the east coast of Africa. The identity of the Asian groups that settled Madagascar is particularly mysterious. While language connects Madagascar to the Ma’anyan of southern Borneo, haploid genetic data are more ambiguous. Here, we screened genome-wide diversity in 211 individuals from the Ma’anyan and surrounding groups in southern Borneo. Surprisingly, the Ma’anyan are characterized by a distinct, high frequency genomic component that is not found in Malagasy. This novel genetic layer occurs at low levels across Island Southeast Asia and hints at a more complex model for the Austronesian expansion in this region. In contrast, Malagasy show genomic links to a range of Island Southeast Asian groups, particularly from southern Borneo, but do not have a clear genetic connection with the Ma’anyan despite the obvious linguistic association. PMID:27188237

New Insight Into The Crustal Structure of The Continental Margin Off NW Sabah/borneo

NASA Astrophysics Data System (ADS)

Barckhausen, U.; Franke, D.; Behain, D.; Meyer, H.

The continental margin offshore NW Sabah/Borneo (Malaysia) has been investigated with reflection and refraction seismics, magnetics, and gravity during the recent cruise BGR01-POPSCOMS. A total of 4000 km of geophysical profiles has been acquired, thereof 2900 km with reflection seismics. Like in major parts of the South China Sea, the area seaward of the Sabah Trough consists of extended continental lithosphere. We found evidence that the continental crust also underlies the continental slope land- ward of the Trough, a fact that raises many questions about the tectonic history and development of this margin. The characteristic pattern of rotated fault blocks and half grabens and the carbon- ates which are observed all over the Dangerous Grounds can be traced a long way landward of the Sabah Trough beneath the sedimentary succession of the upper plate. The magnetic anomalies which are dominated by the magnetic signatures of relatively young volcanic features also continue under the continental slope. The sedimentary rocks of the upper plate, in contrast, seem to generate hardly any magnetic anoma- lies. We suspect that the volcanic activity coincided with the collision of Borneo and the Dangerous Grounds in middle or late Miocene time. The emplacement of an al- lochtonous terrane on top of the extended continental lithosphere could be explained by overthrusting as a result of the collision or it could be related to gravity sliding following a broad uplift of NW Borneo at the same time.

An integrated study of geochemistry and mineralogy of the Upper Tukau Formation, Borneo Island (East Malaysia): Sediment provenance, depositional setting and tectonic implications

NASA Astrophysics Data System (ADS)

Nagarajan, Ramasamy; Roy, Priyadarsi D.; Kessler, Franz L.; Jong, John; Dayong, Vivian; Jonathan, M. P.

2017-08-01

An integrated study using bulk chemical composition, mineralogy and mineral chemistry of sedimentary rocks from the Tukau Formation of Borneo Island (Sarawak, Malaysia) is presented in order to understand the depositional and tectonic settings during the Neogene. Sedimentary rocks are chemically classified as shale, wacke, arkose, litharenite and quartz arenite and consist of quartz, illite, feldspar, rutile and anatase, zircon, tourmaline, chromite and monazite. All of them are highly matured and were derived from a moderate to intensively weathered source. Bulk and mineral chemistries suggest that these rocks were recycled from sedimentary to metasedimentary source regions with some input from granitoids and mafic-ultramafic rocks. The chondrite normalized REE signature indicates the presence of felsic rocks in the source region. Zircon geochronology shows that the samples were of Cretaceous and Triassic age. Comparable ages of zircon from the Tukau Formation sedimentary rocks, granitoids of the Schwaner Mountains (southern Borneo) and Tin Belt of the Malaysia Peninsular suggest that the principal provenance for the Rajang Group were further uplifted and eroded during the Neogene. Additionally, presence of chromian spinels and their chemistry indicate a minor influence of mafic and ultramafic rocks present in the Rajang Group. From a tectonic standpoint, the Tukau Formation sedimentary rocks were deposited in a passive margin with passive collisional and rift settings. Our key geochemical observation on tectonic setting is comparable to the regional geological setting of northwestern Borneo as described in the literature.

Borneo and Indochina are major evolutionary hotspots for Southeast Asian biodiversity.

PubMed

de Bruyn, Mark; Stelbrink, Björn; Morley, Robert J; Hall, Robert; Carvalho, Gary R; Cannon, Charles H; van den Bergh, Gerrit; Meijaard, Erik; Metcalfe, Ian; Boitani, Luigi; Maiorano, Luigi; Shoup, Robert; von Rintelen, Thomas

2014-11-01

Tropical Southeast (SE) Asia harbors extraordinary species richness and in its entirety comprises four of the Earth's 34 biodiversity hotspots. Here, we examine the assembly of the SE Asian biota through time and space. We conduct meta-analyses of geological, climatic, and biological (including 61 phylogenetic) data sets to test which areas have been the sources of long-term biological diversity in SE Asia, particularly in the pre-Miocene, Miocene, and Plio-Pleistocene, and whether the respective biota have been dominated by in situ diversification, immigration and/or emigration, or equilibrium dynamics. We identify Borneo and Indochina, in particular, as major "evolutionary hotspots" for a diverse range of fauna and flora. Although most of the region's biodiversity is a result of both the accumulation of immigrants and in situ diversification, within-area diversification and subsequent emigration have been the predominant signals characterizing Indochina and Borneo's biota since at least the early Miocene. In contrast, colonization events are comparatively rare from younger volcanically active emergent islands such as Java, which show increased levels of immigration events. Few dispersal events were observed across the major biogeographic barrier of Wallace's Line. Accelerated efforts to conserve Borneo's flora and fauna in particular, currently housing the highest levels of SE Asian plant and mammal species richness, are critically required. © The Author(s) 2014. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

New taxa and notes on crickets of the subfamily Landrevinae (Orthoptera: Gryllidae) from Brunei Darussalam, Borneo.

PubMed

Tan, Ming Kai; Wahab, Rodzay Bin Haji Abdul

2017-12-19

New taxa from the subfamily Landrevinae (Orthoptera: Gryllidae) are expected despite recent work on its taxonomy. Here, two more new species from Brunei Darussalam, Borneo are described: Duolandrevus (Eulandrevus) kawataredoki sp. nov. and Endodrelanva nympha sp. nov. The male calling song of D. (E.) kawataredoki sp. nov. is also described. We report the occurrence of a Duolandrevus (Bejorama) from Brunei close to (nr.) luzonensis Otte, 1988. We also document from Brunei a case of parasitic wasp from the genus Liris (Hymenoptera: Crabronidae: Larrini) hunting a Landrevinae.

A high-resolution speleothem record of western equatorial Pacific rainfall: Implications for Holocene ENSO evolution

NASA Astrophysics Data System (ADS)

Chen, Sang; Hoffmann, Sharon S.; Lund, David C.; Cobb, Kim M.; Emile-Geay, Julien; Adkins, Jess F.

2016-05-01

The El Niño-Southern Oscillation (ENSO) is the primary driver of interannual climate variability in the tropics and subtropics. Despite substantial progress in understanding ocean-atmosphere feedbacks that drive ENSO today, relatively little is known about its behavior on centennial and longer timescales. Paleoclimate records from lakes, corals, molluscs and deep-sea sediments generally suggest that ENSO variability was weaker during the mid-Holocene (4-6 kyr BP) than the late Holocene (0-4 kyr BP). However, discrepancies amongst the records preclude a clear timeline of Holocene ENSO evolution and therefore the attribution of ENSO variability to specific climate forcing mechanisms. Here we present δ18 O results from a U-Th dated speleothem in Malaysian Borneo sampled at sub-annual resolution. The δ18 O of Borneo rainfall is a robust proxy of regional convective intensity and precipitation amount, both of which are directly influenced by ENSO activity. Our estimates of stalagmite δ18 O variance at ENSO periods (2-7 yr) show a significant reduction in interannual variability during the mid-Holocene (3240-3380 and 5160-5230 yr BP) relative to both the late Holocene (2390-2590 yr BP) and early Holocene (6590-6730 yr BP). The Borneo results are therefore inconsistent with lacustrine records of ENSO from the eastern equatorial Pacific that show little or no ENSO variance during the early Holocene. Instead, our results support coral, mollusc and foraminiferal records from the central and eastern equatorial Pacific that show a mid-Holocene minimum in ENSO variance. Reduced mid-Holocene interannual δ18 O variability in Borneo coincides with an overall minimum in mean δ18 O from 3.5 to 5.5 kyr BP. Persistent warm pool convection would tend to enhance the Walker circulation during the mid-Holocene, which likely contributed to reduced ENSO variance during this period. This finding implies that both convective intensity and interannual variability in Borneo are driven by coupled air-sea dynamics that are sensitive to precessional insolation forcing. Isolating the exact mechanisms that drive long-term ENSO evolution will require additional high-resolution paleoclimatic reconstructions and further investigation of Holocene tropical climate evolution using coupled climate models.

Active tectonic deformation along rejuvenated faults in tropical Borneo: Inferences obtained from tectono-geomorphic evaluation

NASA Astrophysics Data System (ADS)

Mathew, Manoj Joseph; Menier, David; Siddiqui, Numair; Kumar, Shashi Gaurav; Authemayou, Christine

2016-08-01

The island of Borneo is enveloped by tropical rainforests and hostile terrain characterized by high denudation rates. Owing to such conditions, studies pertaining to neotectonics and consequent geomorphic expressions with regard to surface processes and landscape evolution are inadequately constrained. Here we demonstrate the first systematic tectono-geomorphic evaluation of north Borneo through quantitative and qualitative morphotectonic analysis at sub-catchment scale, for two large drainage basins located in Sarawak: the Rajang and Baram basins. The extraction of morphometric parameters utilizing digital elevation models arranged within a GIS environment focuses on hypsometric curve analysis, distribution of hypsometric integrals through spatial autocorrelation statistics, relative uplift values, the asymmetry factor and the normalized channel steepness index. Hypsometric analysis suggests a young topography adjusting to changes in tectonic boundary conditions. Autocorrelation statistics show clusters of high values of hypsometric integrals as prominent hotspots that are associated with less eroded, young topography situated in the fold and thrust belts of the Interior Highlands of Borneo. High channel steepness and gradients (> 200 m0.9) are observed in zones corresponding to the hotspots. Relative uplift values reveal the presence of tectonically uplifted blocks together with relatively subsided or lesser uplifted zones along known faults. Sub-catchments of both basins display asymmetry indicating tectonic tilting. Stream longitudinal profiles demonstrate the presence of anomalies in the form of knickzones without apparent lithological controls along their channel reaches. Surfaces represented by cold spots of low HI values and low channel gradients observed in the high elevation headwaters of both basins are linked to isolated erosional planation surfaces that could be remnants of piracy processes. The implication of our results is that Borneo experiences active folding of the Rajang Group fold-thrust belt to present and these events reactivated old major faults and minor related dislocations. From geomorphic analysis associated with sedimentary record, we posit that the terrain could have undergone high uplift rates since 5 Ma or multi-phased uplift with periodic intermittent pulses of high and low uplift rates.

Genetic relatedness of indigenous ethnic groups in northern Borneo to neighboring populations from Southeast Asia, as inferred from genome-wide SNP data.

PubMed

Yew, Chee Wei; Hoque, Mohd Zahirul; Pugh-Kitingan, Jacqueline; Minsong, Alexander; Voo, Christopher Lok Yung; Ransangan, Julian; Lau, Sophia Tiek Ying; Wang, Xu; Saw, Woei Yuh; Ong, Rick Twee-Hee; Teo, Yik-Ying; Xu, Shuhua; Hoh, Boon-Peng; Phipps, Maude E; Kumar, S Vijay

2018-07-01

The region of northern Borneo is home to the current state of Sabah, Malaysia. It is located closest to the southern Philippine islands and may have served as a viaduct for ancient human migration onto or off of Borneo Island. In this study, five indigenous ethnic groups from Sabah were subjected to genome-wide SNP genotyping. These individuals represent the "North Borneo"-speaking group of the great Austronesian family. They have traditionally resided in the inland region of Sabah. The dataset was merged with public datasets, and the genetic relatedness of these groups to neighboring populations from the islands of Southeast Asia, mainland Southeast Asia and southern China was inferred. Genetic structure analysis revealed that these groups formed a genetic cluster that was independent of the clusters of neighboring populations. Additionally, these groups exhibited near-absolute proportions of a genetic component that is also common among Austronesians from Taiwan and the Philippines. They showed no genetic admixture with Austro-Melanesian populations. Furthermore, phylogenetic analysis showed that they are closely related to non-Austro-Melansian Filipinos as well as to Taiwan natives but are distantly related to populations from mainland Southeast Asia. Relatively lower heterozygosity and higher pairwise genetic differentiation index (F ST ) values than those of nearby populations indicate that these groups might have experienced genetic drift in the past, resulting in their differentiation from other Austronesians. Subsequent formal testing suggested that these populations have received no gene flow from neighboring populations. Taken together, these results imply that the indigenous ethnic groups of northern Borneo shared a common ancestor with Taiwan natives and non-Austro-Melanesian Filipinos and then isolated themselves on the inland of Sabah. This isolation presumably led to no admixture with other populations, and these individuals therefore underwent strong genetic differentiation. This report contributes to addressing the paucity of genetic data on representatives from this strategic region of ancient human migration event(s). © 2018 John Wiley & Sons Ltd/University College London.

Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia.

PubMed

Yew, Chee-Wei; Lu, Dongsheng; Deng, Lian; Wong, Lai-Ping; Ong, Rick Twee-Hee; Lu, Yan; Wang, Xiaoji; Yunus, Yushimah; Aghakhanian, Farhang; Mokhtar, Siti Shuhada; Hoque, Mohammad Zahirul; Voo, Christopher Lok-Yung; Abdul Rahman, Thuhairah; Bhak, Jong; Phipps, Maude E; Xu, Shuhua; Teo, Yik-Ying; Kumar, Subbiah Vijay; Hoh, Boon-Peng

2018-02-01

Southeast Asia (SEA) is enriched with a complex history of peopling. Malaysia, which is located at the crossroads of SEA, has been recognized as one of the hubs for early human migration. To unravel the genomic complexity of the native inhabitants of Malaysia, we sequenced 12 samples from 3 indigenous populations from Peninsular Malaysia and 4 native populations from North Borneo to a high coverage of 28-37×. We showed that the Negritos from Peninsular Malaysia shared a common ancestor with the East Asians, but exhibited some level of gene flow from South Asia, while the North Borneo populations exhibited closer genetic affinity towards East Asians than the Malays. The analysis of time of divergence suggested that ancestors of Negrito were the earliest settlers in the Malay Peninsula, whom first separated from the Papuans ~ 50-33 thousand years ago (kya), followed by East Asian (~ 40-15 kya), while the divergence time frame between North Borneo and East Asia populations predates the Austronesian expansion period implies a possible pre-Neolithic colonization. Substantial Neanderthal ancestry was confirmed in our genomes, as was observed in other East Asians. However, no significant difference was observed, in terms of the proportion of Denisovan gene flow into these native inhabitants from Malaysia. Judging from the similar amount of introgression in the Southeast Asians and East Asians, our findings suggest that the Denisovan gene flow may have occurred before the divergence of these populations and that the shared similarities are likely an ancestral component.

Diversification in a biodiversity hotspot--the evolution of Southeast Asian rhacophorid tree frogs on Borneo (Amphibia: Anura: Rhacophoridae).

PubMed

Hertwig, Stefan T; Schweizer, Manuel; Das, Indraneil; Haas, Alexander

2013-09-01

The tree-frog family Rhacophoridae is a major group contributing to the high pecies richness and reproductive diversity among vertebrates of Sundaland. Nonetheless, rhacophorid evolution, specially on Borneo, has not been studied within a phylogenetic context. In this study, we examine the phylogenetic relationships of 38 (out of 41) Bornean species of Rhacophoridae, in combination with data from previous phylogenetic studies. In the final super matrix of 91 species, we analyse sequence data from two mitochondrial and three nuclear genes. The resulting trees show the genus Rhacophorus as a paraphyletic assemblage. As a consequence, we transfer Rhacophorus appendiculatus and R. kajau to two other genera and propose the new phylogeny-based combinations--Kurixalus appendiculatus and Feihyla kajau, respectively. Furthermore, we use our phylogenetic hypotheses to reconstruct the evolution of reproductive modes in rhacophorid tree frogs. Direct development to the exclusion of a free larval stage evolved twice independently, once in an ancestor of the Pseudophilautus+Raorchestes clade in India and Sri Lanka, and once within Philautus in Southeast Asia. The deposition of egg clutches covered by a layer of jelly in Feihyla is also present in F. kajau and thus confirms our generic reassignment. The remarkably high diversity of rhacophorid tree frogs on Borneo is the outcome of a complex pattern of repeated vicariance and dispersal events caused by past changes in the climatic and geological history of the Sunda shelf. We identified geographic clades of closely related endemic species within Rhacophorus and Philautus, which result from local island radiations on Borneo. Copyright © 2013 Elsevier Inc. All rights reserved.

Borneo vortex and mesoscale convective rainfall

NASA Astrophysics Data System (ADS)

Koseki, S.; Koh, T.-Y.; Teo, C.-K.

2014-05-01

We have investigated how the Borneo vortex develops over the equatorial South China Sea under cold surge conditions in December during the Asian winter monsoon. Composite analysis using reanalysis and satellite data sets has revealed that absolute vorticity and water vapour are transported by strong cold surges from upstream of the South China Sea to around the Equator. Rainfall is correspondingly enhanced over the equatorial South China Sea. A semi-idealized experiment reproduced the Borneo vortex over the equatorial South China Sea during a "perpetual" cold surge. The Borneo vortex is manifested as a meso-α cyclone with a comma-shaped rainband in the northeast sector of the cyclone. Vorticity budget analysis showed that the growth/maintenance of the meso-α cyclone was achieved mainly by the vortex stretching. This vortex stretching is due to the upward motion forced by the latent heat release around the cyclone centre. The comma-shaped rainband consists of clusters of meso-β-scale rainfall cells. The intense rainfall in the comma head (comma tail) is generated by the confluence of the warmer and wetter cyclonic easterly flow (cyclonic southeasterly flow) and the cooler and drier northeasterly surge in the northwestern (northeastern) sector of the cyclone. Intense upward motion and heavy rainfall resulted due to the low-level convergence and the favourable thermodynamic profile at the confluence zone. In particular, the convergence in the northwestern sector is responsible for maintenance of the meso-α cyclone system. At both meso-α and meso-β scales, the convergence is ultimately caused by the deviatoric strain in the confluence wind pattern but is significantly self-enhanced by the nonlinear dynamics.

Earth Observation

NASA Image and Video Library

2014-08-05

ISS040-E-088891 (5 Aug. 2014) --- Thunderheads near Borneo, Indonesia are featured in this image photographed by an Expedition 40 crew member on the International Space Station. Late afternoon sun casts long shadows from high thunderhead anvils over southern Borneo. Crews aboard the space station have recently concentrated on panoramic views of clouds?taken with lenses similar to the focal length of the human eye. These images reveal the kinds of views crews see -- huge areas of the planet, with a strong three-dimensional sense of what it is like to fly 350 kilometers above Earth. Winds usually blow in different directions at different altitudes. High-altitude winds are clearly sweeping the tops off the many tallest thunderclouds, generating long anvils of diffuse cirrus plumes that trail south. At low levels, ?streets? of white dots -- fair-weather cumulus clouds -- are aligned with west-moving winds (lower left). Small smoke plumes from forest fires onshore are also aligned west. Storm formation near the horizon -- more than 1,000 kilometers away (center) -- is assisted by air currents rising over the central mountains of Borneo.

Fire in the Vegetation and Peatlands of Borneo, 1997-2007: Patterns, Drivers and Emissions from Biomass Burning

NASA Astrophysics Data System (ADS)

Spessa, Allan; Weber, Ulrich; Langner, Andreas; Siegert, Florian; Heil, Angelika

2010-05-01

The peatland forests of equatorial SE Asia cover over 20 Mha with most located in Indonesia. Indonesian peatlands are globally one of the largest near-surface reserves of terrestrial organic carbon, with peat deposits of up to 20m thick and an estimated carbon storage of 55-61 Gt. The destructive fires in Indonesia during the exceptionally strong drought of late 1997 and early 1998 mark some of the largest peak emissions events in recorded history of global fires. Past studies estimate that about 1Gt of carbon was released to the atmosphere from the Indonesian fires in 1997- equivalent to 14% of the average global annual fossil fuel emissions released during the 1990s. Previous studies have established a non-linear negative correlation between fires and antecedent rainfall in Borneo, with ENSO-driven droughts being identified as the main cause of below-average rainfall events over the past decade or so. However, while these studies suggest that this non-linear relationship is mediated by ignitions associated with land use and land cover change (LULCC), they have not demonstrated it. A clear link between fires and logging in Borneo has been reported, but this work was restricted to eastern Kalimantan and the period 1997-98. The relationship between fires, emissions, rainfall and LULCC across the island of Borneo therefore remains to be examined using available fine resolution data over a multi-year period. Using rainfall data, up-to-date peat maps and state-of-the art satellite sensor data to determine burnt area and deforestation patterns over the decade 1997-2007, we show at a pixel working resolution of 0.25 degrees the following: Burning across Borneo predominated in southern Kalimantan. Fire activity is negatively and non-linearly correlated to rainfall mainly in pixels that have undergone a significant reduction in forest cover, and that the bigger the reduction, the stronger the correlation. Such pixels occur overwhelmingly in southern Kalimantan. These correlations are noticeably much weaker or absent in Sarawak and Sabah, and central Borneo, where little or no deforestation was observed. Emissions from biomass burning reflect fire activity, and that fires in the carbon-rich peats of southern Kalimantan dominate the emissions profile during the El Nino years of 1997-98, 2002, 2004 and 2006. Previous work in southern Amazon forests demonstrates that recurrent fires promote a change from tree-dominated to grass-dominated ecosystems which, in turn, promotes even more fires. We show that recurrent fire and deforestation are also linked as part of a similar positive feedback process in Kalimantan. Our results support the detailed field work undertaken in 1997-98 in East Kalimantan, and reinforce these findings across time and space. Emissions from fires in Kalimantan peatlands represent a serious perturbation in terms of forcing from trace gases and aerosols on regional and global climate. Several global and regional climate modelling studies have reported that equatorial SE Asia, including Borneo, will experience reduced rainfall in future decades. At the same time, demands for establishing pulp paper and palm oil plantations to replace native rainforests, especially on peatlands where tenure conflicts among land owners tend to be minimal, is forecast to increase. These joint scenarios imply even more fires and emissions in future. It is critical therefore that present efforts to mitigate emissions through reduced deforestation programs in the region works, otherwise the consequences will be disastrous.

Oroclines and paleomagnetism in Borneo and South-East Asia

NASA Astrophysics Data System (ADS)

Hutchison, Charles S.

2010-12-01

Oroclinal bending of Borneo is interpreted to result from indentation and collision by the continental promontory of the Miri Zone-Central Luconia Province of northern Sundaland into southern Sundaland. The collision caused strong compression and uplift of the intervening Sibu Zone Upper Cretaceous-Eocene Rajang-Embaluh Group turbidite basin that was floored by oceanic crust of the Proto South China Sea. Timing of the collision is indicated by uplift of turbidite formations to be overlain by Upper Eocene-Lower Oligocene carbonates and intrusion of tin-mineralised granites into the turbidites at the south-east maximum inflexion of the orocline, a region complicated by juxtaposition of both shallow and deep water formations. The oroclinal model, requiring clockwise rotation of the north-west limb, is given no support from the paleomagnetic data that instead demonstrate about 50° of Cenozoic anti-clockwise rotation. Unfortunately not a single outcrop of the strongly oroclinally bent Sibu Zone rocks was measured for paleomagnetism in the north-west limb. Limited support was given for the required anti-clockwise rotation in the north-east limb. Previous syntheses emphasised anti-clockwise rotation, or stable non-rotation of the greater Borneo region as a coherent entity, without any internal deformation. Such models have ignored the oroclinal shape defined by the areal geology of the island, known since early Dutch publications. The northern Thailand-Myanmar north-south-trending geology fabric results from indentation by a promontory of continental India at the Assam-Yunnan oroclinal syntaxis, resulting in paleomagnetically-determined clockwise rotation. The bend of Peninsular Malaysia and Sumatra, from north-south changing to west-east towards Borneo in the south, remains difficult to model because of widespread remagnetisation.

Variation in perikymata counts between repetitive episodes of linear enamel hypoplasia among orangutans from Sumatra and Borneo.

PubMed

Skinner, Mark F

2014-05-01

The goal of this study is to evaluate whether repetitive linear enamel hypoplasia (rLEH) in apes is ecologically informative. LEH, which appears as grooves of thinner enamel often caused by malnutrition and/or disease, is a permanent record of departures from developmental homeostasis in infant and juvenile apes. Orangutans were selected for the study as they are a threatened species, have a remarkably high prevalence of rLEH, and because Sumatra is deemed a better habitat for orangutans than is Borneo, facilitating an ecological comparison. Objectives are to determine: a) whether periodicity of rLEH in orangutans corresponds to monsoon-mediated cycles in precipitation or food; and b) whether patterning of rLEH supports the view that Borneo is an inferior habitat. This study compares the counts of perikymata between adjacent LEH from 9 Sumatran and 26 Bornean orangutans to estimate the periodicity of rLEH. A total of 131 nonredundant inter-LEH perikymata counts were transformed to natural log values to reveal clusters of counts in a multiplicative series. Using a value of 10 days to form one perikyma, rLEH tends to recur semiannually in both populations. However, Sumatran orangutans show significantly fewer semiannual intervals and more annually recurring episodes. Bornean orangutans show mostly semiannual intervals and are more variable in inter-LEH perikymata counts. It is concluded that: a) developmental conditions for infant orangutans in Sumatra protect them somewhat from seasonal and environmental variation; b) temporal patterning of rLEH indicates that Borneo is the poorer habitat for orangutans; and c) the study of rLEH can be ecologically informative. Copyright © 2014 Wiley Periodicals, Inc.

Borneo Vortex and Meso-scale Convective Rainfall

NASA Astrophysics Data System (ADS)

Koh, T. Y.; Koseki, S.; Teo, C. K.

2014-12-01

We have investigated how the Borneo vortex develops over the equatorial South China Sea under cold surge conditions in December during the Asian winter monsoon. Composite analysis using reanalysis and satellite datasets has revealed that absolute vorticity and water vapour are transported by strong cold surges from upstream of the South China Sea to around the equator. Rainfall is correspondingly enhanced over the equatorial South China Sea. A semi-idealized experiment reproduced the Borneo vortex over the equatorial South China Sea during a perpetual cold surge. The Borneo vortex is manifested as a meso-alpha cyclone with a comma-shaped rainband in the northeast sector of the cyclone. Vorticity budget analysis showed that the growth/maintenance of the meso-alpha cyclone was achieved mainly by the vortex stretching. This vortex stretching is due to the upward motion forced by the latent heat release around the cyclone centre. The comma-shaped rainband consists of clusters of meso-beta scale rainfall cells. The intense rainfall in the comma-head (comma-tail) is generated by the confluence of the warmer and wetter cyclonic easterly flow (cyclonic southeasterly flow) and the cooler and drier northeasterly surge in the northwestern (northeastern) sector of the cyclone. Intense upward motion and heavy rainfall resulted due to the low-level convergence and the favourable thermodynamic profile at the confluence zone. In particular, the convergence in the northwestern sector is responsible for maintenance of the meso-alpha cyclone system. At both meso-alpha and meso-beta scales, the convergence is ultimately caused by the deviatoric strain in the confluence wind pattern but is significantly self-enhanced by the nonlinear dynamics. Reference: Koseki, S., T.-Y. Koh and C.-K. Teo (2014), Atmospheric Chemistry and Physics, 14, 4539-4562, doi:10.5194/acp-14-4539-2014, 2014.

A preliminary checklist of the freshwater snails of Sabah (Malaysian Borneo) deposited in the BORNEENSIS collection, Universiti Malaysia Sabah

PubMed Central

Ng, Ting Hui; Dulipat, Jasrul; Foon, Junn Kitt; Lopes-Lima, Manuel; Alexandra Zieritz; Liew, Thor-Seng

2017-01-01

Abstract Sabah, a Malaysian state at the north-eastern tip of Borneo, is situated in one of the Earth’s biodiversity hotspots yet its freshwater gastropod diversity remains poorly known. An annotated checklist of the freshwater gastropods is presented, based on specimens deposited in the BORNEENSIS collection of the Institute for Tropical Biology and Conservation at Universiti Malaysia Sabah, Malaysia. A KMZ file is also provided, which acts as a repository of digital images and complete collection data of all examined material, so that it can be shared and adapted to facilitate future research. PMID:28769673

Evidence of possible natural infections of man with Brugia pahangi in South Kalimantan (Borneo), Indonesia.

PubMed

Palmieri, J R; Ratiwayanto, S; Masbar, S; Tirtokusumo, S; Rusch, J; Marwoto, H A

1985-09-01

Blood from 9 humans, 6 domestic cats (Felis domesticus), and 5 silvered leaf monkeys (Presbytis cristatus) from South Kalimantan (Borneo), Indonesia, with known filarial infections was examined for determination ofacid phosphatase activity of the microfilarae (mff). The findings suggest 1) that Brugia parasites from domestic cats and silvered leaf monkeys can be speciated by acid phosphatase activity and that speciation by acid phosphatase assay corresponds to that based upon adult worm morphology and 2) that Brugia mff from humans have acid phosphatase activity characteristic of that of B. pahangi microfilariae from cat and monkey. Thus B. pahangi may infect man in South Kalimantan.

Structural elements of the Sulu Sea, Philippines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hinz, K.; Block, M.; Kudrass, H.R.

1994-07-01

The structure and tectonic history of the Sulu Sea are described on the basis of seismic reflection data combined with the findings of onshore and offshore geological studies, and the results of ODP Leg 124 drilling. Closing of a hypothetical Mesozoic proto-South China Sea associated with the formation of oceanic crustal splinters in the late Eocene followed by southward subduction and, in turn, progressive collision of the north Palawan continental terrane with the micro-continental Borneo plate since the middle Miocene, resulted in the formation of the structurally complex Sulu-Borneo collision belt. The latter comprises north Sabah, southern and central Palawan,more » and the northwest Sulu basin. Fracturing of the Borneo micro-continental plate into the Sulu and Cagayan ridges initiated the opening of the southeast Sulu basin during the late Oligocene through the early Miocene. Collision of the north Palawan continental terrane with Cagayan Ridge in the late early Miocene and oblique collision of these blocks with the central Philippines resulted in the still ongoing closing of the southeast Sulu basin since the middle or late Miocene. Closing of the southeast Sulu basin began with the formation of an oceanic crustal slab.« less

Distinct genetic difference between the Duffy binding protein (PkDBPαII) of Plasmodium knowlesi clinical isolates from North Borneo and Peninsular Malaysia.

PubMed

Fong, Mun-Yik; Rashdi, Sarah A A; Yusof, Ruhani; Lau, Yee-Ling

2015-02-21

Plasmodium knowlesi is one of the monkey malaria parasites that can cause human malaria. The Duffy binding protein of P. knowlesi (PkDBPαII) is essential for the parasite's invasion into human and monkey erythrocytes. A previous study on P. knowlesi clinical isolates from Peninsular Malaysia reported high level of genetic diversity in the PkDBPαII. Furthermore, 36 amino acid haplotypes were identified and these haplotypes could be separated into allele group I and allele group II. In the present study, the PkDBPαII of clinical isolates from the Malaysian states of Sarawak and Sabah in North Borneo was investigated, and compared with the PkDBPαII of Peninsular Malaysia isolates. Blood samples from 28 knowlesi malaria patients were used. These samples were collected between 2011 and 2013 from hospitals in North Borneo. The PkDBPαII region of the isolates was amplified by PCR, cloned into Escherichia coli, and sequenced. The genetic diversity, natural selection and phylogenetics of PkDBPαII haplotypes were analysed using MEGA5 and DnaSP ver. 5.10.00 programmes. Forty-nine PkDBPαII sequences were obtained. Comparison at the nucleotide level against P. knowlesi strain H as reference sequence revealed 58 synonymous and 102 non-synonymous mutations. Analysis on these mutations showed that PkDBPαII was under purifying (negative) selection. At the amino acid level, 38 different PkDBPαII haplotypes were identified. Twelve of the 28 blood samples had mixed haplotype infections. Phylogenetic analysis revealed that all the haplotypes were in allele group I, but they formed a sub-group that was distinct from those of Peninsular Malaysia. Wright's FST fixation index indicated high genetic differentiation between the North Borneo and Peninsular Malaysia haplotypes. This study is the first to report the genetic diversity and natural selection of PkDBPαII of P. knowlesi from Borneo Island. The PkDBPαII haplotypes found in this study were distinct from those from Peninsular Malaysia. This difference may not be attributed to geographical separation because other genetic markers studied thus far such as the P. knowlesi circumsporozoite protein gene and small subunit ribosomal RNA do not display such differentiation. Immune evasion may possibly be the reason for the differentiation.

Rainfall,bulk deposition of nutrients and their seasonal variation in two tropical lowland and montane forests in Borneo

NASA Astrophysics Data System (ADS)

Gomyo, M.; Kuraji, K.; Kitayama, K.; Suzuki, M.

2008-12-01

The Borneo Island, the third largest in the world, is experiencing rapid and extensive changes driven by population growth and economic expansion. This change has induced the tropical forest conversion to other land uses for subsistence cultivations, large-scale mono crop plantations and the irreversible loss of forest biodiversity. In this paper, we examine rainwater chemistry observed at two different national parks in Malaysian Borneo for 12 months. We present annual bulk nutrient input flux and its seasonality, and the results are compared with data obtained at a number of other locations in the tropics. The possible source of the atmospheric nutrients and factors determining the differences of the two sites in Borneo is discussed. Nutrient fluxes in rainfall were measured two times every week in natural tropical montane rain forest in Mount Kinabalu National Park (MK) and natural tropical lowland rain forest in Lambir Hills National Park (LH) in Malaysian Borneo. Annual rainfall in MK and LH were 3,232 and 2,978 mm yr-1 respectively. Three-month rainfall during the northeast monsoon season in LH was 1.6 times greater than that in MK, whereas the 3- month rainfall during the southwest monsoon season in MK was 2.8 times greater than that in LH. The difference of volume-weighed mean ion concentration of nutrients of rainwater between MK and LH is not significant except Mg and Ca. The correlation coefficient between Na and Cl concentration is greater in LH than in MK suggesting that the rainwater chemistry was affected by mainly marine origin in LH both marine and terrestrial origin in MK. From the comparison of annual flux of nutrients in MK and LH with the other sites in the other tropical sites, it was noted that the Na and Cl flux in LH, which is only 13.7 km from the coast, is relatively low compared with the other sites located less than 20 km from the coast. Classification of nutrients was done by cluster analysis of 3-month nutrient flux in MK and LH and the results support the hypothesis of the different origin of nutrients between MK an LH. The source of high Mg and SO4-S flux in LH might be the outcrops of bedrock along the roads which contains high Mg and SO4-S.

Characteristics of Borneo and Sumatra fire plume heights and smoke clouds and their impact on regional El Niño-induced drought

NASA Astrophysics Data System (ADS)

Tosca, Michael; Randerson, James; Zender, Charles; Flanner, Mark; Nelson, David; Diner, David; Rasch, Phil; Logan, Jennifer

2010-05-01

During the dry season, anthropogenic fires burn the tropical forests and peatlands of equatorial Asia and produce regionally expansive smoke clouds. We estimated the altitude of smoke from these fires, characterized the sensitivity of this smoke to regional drought and El Niño variability, and investigated its effect on climate. We used the MISR satellite product and MISR INteractive eXplorer (MINX) software to estimate the heights of 382 smoke plumes (smoke with a visible surface source and transport direction) on Borneo and 121 plumes on Sumatra for 2001-2009. In addition, we estimated the altitudes of 10 smoke clouds (opaque regions of smoke with no detectable surface source or transport direction) on Borneo for 2006. Most smoke plumes (80%) were observed during El Niño events (2002, 2004, 2006, 2009); this is consistent with higher aerosol optical depths observed during El Niño-induced drought. Annually averaged plume heights on Borneo were positively correlated to the Oceanic Niño Index (ONI), an indicator of El Niño (r2 = 0.53). The mean plume height for all El Niño years was 765.8 ± 19.7m, compared to 711.4 ± 28.7 for non-El Niño years. The median altitude of all 10 smoke clouds observed on Borneo during 2006 was 1313m, compared to a median 787m for smoke plume grid cells. The area covered by all smoke plumes from 2006 corresponded to approximately three individual smoke clouds. We investigated the climate response to these expansive smoke clouds using the Community Atmosphere Model (CAM). Climate variables from two 30 year simulations were compared: one simulation was forced with fire emissions typical of a dry (El Niño) burning year, while the other was forced with emissions typical of a low (La Niña) burning year. Fire aerosols reduced net shortwave radiation at the surface during August-October by an average of 10% in the region encompassing most of Sumatra and Borneo (90°E-120°E, 5°S-5°N). The reductions in net radiation cooled both ocean (0.5 ± 0.3°C) and land (0.4 ± 0.2°C) temperatures during these months. Tropospheric heating from black carbon (BC) absorption increased substantially (20.5 ± 9.3 W m-2), but was balanced by an overall reduction in latent heating. The combination of decreased SSTs and increased atmospheric heating reduced regional precipitation by 0.9 ± 0.6 mm d-1 (10%). This implies that the vulnerability of ecosystems to fire was increased because the reductions in precipitation exceeded those for evapotranspiration. Together, the satellite and modeling results imply a possible positive feedback loop in which anthropogenic burning in the region intensifies drought stress during El Niño.

Extreme Differences in Forest Degradation in Borneo: Comparing Practices in Sarawak, Sabah, and Brunei

PubMed Central

Bryan, Jane E.; Shearman, Philip L.; Asner, Gregory P.; Knapp, David E.; Aoro, Geraldine; Lokes, Barbara

2013-01-01

The Malaysian states of Sabah and Sarawak are global hotspots of forest loss and degradation due to timber and oil palm industries; however, the rates and patterns of change have remained poorly measured by conventional field or satellite approaches. Using 30 m resolution optical imagery acquired since 1990, forest cover and logging roads were mapped throughout Malaysian Borneo and Brunei using the Carnegie Landsat Analysis System. We uncovered ∼364,000 km of roads constructed through the forests of this region. We estimated that in 2009 there were at most 45,400 km2 of intact forest ecosystems in Malaysian Borneo and Brunei. Critically, we found that nearly 80% of the land surface of Sabah and Sarawak was impacted by previously undocumented, high-impact logging or clearing operations from 1990 to 2009. This contrasted strongly with neighbouring Brunei, where 54% of the land area remained covered by unlogged forest. Overall, only 8% and 3% of land area in Sabah and Sarawak, respectively, was covered by intact forests under designated protected areas. Our assessment shows that very few forest ecosystems remain intact in Sabah or Sarawak, but that Brunei, by largely excluding industrial logging from its borders, has been comparatively successful in protecting its forests. PMID:23874983

The Duffy binding protein (PkDBPαII) of Plasmodium knowlesi from Peninsular Malaysia and Malaysian Borneo show different binding activity level to human erythrocytes.

PubMed

Lim, Khai Lone; Amir, Amirah; Lau, Yee Ling; Fong, Mun Yik

2017-08-11

The zoonotic Plasmodium knowlesi is a major cause of human malaria in Malaysia. This parasite uses the Duffy binding protein (PkDBPαII) to interact with the Duffy antigen receptor for chemokines (DARC) receptor on human and macaque erythrocytes to initiate invasion. Previous studies on P. knowlesi have reported distinct Peninsular Malaysia and Malaysian Borneo PkDBPαII haplotypes. In the present study, the differential binding activity of these haplotypes with human and macaque (Macaca fascicularis) erythrocytes was investigated. The PkDBPαII of Peninsular Malaysia and Malaysian Borneo were expressed on the surface of COS-7 cells and tested with human and monkey erythrocytes, with and without anti-Fy6 (anti-Duffy) monoclonal antibody treatment. Binding activity level was determined by counting the number of rosettes formed between the transfected COS-7 cells and the erythrocytes. Anti-Fy6 treatment was shown to completely block the binding of human erythrocytes with the transfected COS-7 cells, thus verifying the specific binding of human DARC with PkDBPαII. Interestingly, the PkDBPαII of Peninsular Malaysia displayed a higher binding activity with human erythrocytes when compared with the Malaysian Borneo PkDBPαII haplotype (mean number of rosettes formed = 156.89 ± 6.62 and 46.00 ± 3.57, respectively; P < 0.0001). However, no difference in binding activity level was seen in the binding assay using M. fascicularis erythrocytes. This study is the first report of phenotypic difference between PkDBPαII haplotypes. The biological implication of this finding is yet to be determined. Therefore, further studies need to be carried out to determine whether this differential binding level can be associated with severity of knowlesi malaria in human.

A tectonic model for the Tertiary evolution of strike slip faults and rift basins in SE Asia

NASA Astrophysics Data System (ADS)

Morley, C. K.

2002-04-01

Models for the Tertiary evolution of SE Asia fall into two main types: a pure escape tectonics model with no proto-South China Sea, and subduction of proto-South China Sea oceanic crust beneath Borneo. A related problem is which, if any, of the main strike-slip faults (Mae Ping, Three Pagodas and Aliao Shan-Red River (ASRR)) cross Sundaland to the NW Borneo margin to facilitate continental extrusion? Recent results investigating strike-slip faults, rift basins, and metamorphic core complexes are reviewed and a revised tectonic model for SE Asia proposed. Key points of the new model include: (1) The ASRR shear zone was mainly active in the Eocene-Oligocene in order to link with extension in the South China Sea. The ASRR was less active during the Miocene (tens of kilometres of sinistral displacement), with minor amounts of South China Sea spreading centre extension transferred to the ASRR shear zone. (2) At least three important regions of metamorphic core complex development affected Indochina from the Oligocene-Miocene (Mogok gneiss belt; Doi Inthanon and Doi Suthep; around the ASRR shear zone). Hence, Paleogene crustal thickening, buoyancy-driven crustal collapse, and lower crustal flow are important elements of the Tertiary evolution of Indochina. (3) Subduction of a proto-South China Sea oceanic crust during the Eocene-Early Miocene is necessary to explain the geological evolution of NW Borneo and must be built into any model for the region. (4) The Eocene-Oligocene collision of NE India with Burma activated extrusion tectonics along the Three Pagodas, Mae Ping, Ranong and Klong Marui faults and right lateral motion along the Sumatran subduction zone. (5) The only strike-slip fault link to the NW Borneo margin occurred along the trend of the ASRR fault system, which passes along strike into a right lateral transform system including the Baram line.

Unravelling the stratigraphy and sedimentation history of the uppermost Cretaceous to Eocene sediments of the Kuching Zone in West Sarawak (Malaysia), Borneo

NASA Astrophysics Data System (ADS)

Breitfeld, H. Tim; Hall, Robert; Galin, Thomson; BouDagher-Fadel, Marcelle K.

2018-07-01

The Kuching Zone in West Sarawak consists of two different sedimentary basins, the Kayan and Ketungau Basins. The sedimentary successions in the basins are part of the Kuching Supergroup that extends into Kalimantan. The uppermost Cretaceous (Maastrichtian) to Lower Eocene Kayan Group forms the sedimentary deposits directly above a major unconformity, the Pedawan Unconformity, which marks the cessation of subduction-related magmatism beneath SW Borneo and the Schwaner Mountains, due to termination of the Paleo-Pacific subduction. The successions consist of the Kayan and Penrissen Sandstones and are dominated by fluvial channels, alluvial fans and floodplain deposits with some deltaic to tidally-influenced sections in the Kayan Sandstone. In the late Early or early Middle Eocene, sedimentation in this basin ceased and a new basin, the Ketungau Basin, developed to the east. This change is marked by the Kayan Unconformity. Sedimentation resumed in the Middle Eocene (Lutetian) with the marginal marine, tidal to deltaic Ngili Sandstone and Silantek Formation. Upsequence, the Silantek Formation is dominated by floodplain and subsidiary fluvial deposits. The Bako-Mintu Sandstone, a potential lateral equivalent of the Silantek Formation, is formed of major fluvial channels. The top of the Ketungau Group in West Sarawak is formed by the fluvially-dominated Tutoop Sandstone. This shows a transition of the Ketungau Group in time towards terrestrial/fluvially-dominated deposits. Paleocurrent measurements show river systems were complex, but reveal a dominant southern source. This suggests uplift of southern Borneo initiated in the region of the present-day Schwaner Mountains from the latest Cretaceous onwards. Additional sources were local sources in the West Borneo province, Mesozoic melanges to the east and potentially the Malay Peninsula. The Ketungau Group also includes reworked deposits of the Kayan Group. The sediments of the Kuching Supergroup are predominantly horizontal or dip with low angles and form large open synclines. Steep dips are usually restricted to faults, such as the Lupar Line.

The fluorescence properties of aerosol larger than 0.8 μm in urban and tropical rainforest locations

NASA Astrophysics Data System (ADS)

Gabey, A. M.; Stanley, W. R.; Gallagher, M. W.; Kaye, P. H.

2011-06-01

UV-LIF measurements were performed on ambient aerosol in Manchester, UK (urban city centre, winter) and Borneo, Malaysia (remote, tropical) using a Wide Issue Bioaerosol Spectrometer, version 3 (WIBS3). These sites are taken to represent environments with minor and significant primary biological aerosol (PBA) influences respectively, and the urban dataset describes the fluorescent background aerosol against which PBA must be identified by researchers using LIF. The ensemble aerosol at both sites was characterised over 2-3 weeks by measuring the fluorescence intensity and optical equivalent diameter (DP) of single particles sized 0.8 ≤ DP ≤ 20 μm. Filter samples were also collected for a subset of the Manchester campaign and analysed using energy dispersive X-Ray (EDX) spectroscopy and environmental scanning electron microscopy (ESEM), which revealed mostly non-PBA at D ≤ 1 μm. The WIBS3 features three fluorescence channels: the emission following a 280 nm excitation is recorded at 310-400 nm (channel F1) and 400-600 nm (F2), and fluorescence excited at 350 nm is detected at 400-600 nm (F3). In Manchester the primary size mode of fluorescent and non-fluorescent material was present at 0.8-1.2 μm, with a secondary fluorescent mode at 2-4 μm. In Borneo non-fluorescent material peaked at 0.8-1.2 μm and fluorescent at 3-4 μm. Agreement between fluorescent number concentrations in each channel differed at the two sites, with F1 and F3 reporting similar concentrations in Borneo but F3 outnumbering F1 by a factor of 2-3 across the size spectrum in Manchester. The fluorescence intensity in each channel generally rose with DP at both sites with the exception of F1 intensity in Manchester, which peaked at DP = 4 μm, causing a divergence between F1 and F3 intensity at larger DP. This divergence and the differing fluorescent particle concentrations demonstrate the additional discrimination provided by the F1 channel in Manchester. The relationships between fluorescence intensities in different pairs of channels were also investigated as a function of DP. Differences between these metrics were apparent at each site and provide some distinction between the two datasets. Finally, particle selection criteria based on the Borneo dataset were applied to identify a median concentration of 10 "Borneo-like" fluorescent particles per litre in Manchester.

Age and provenance of Triassic to Cenozoic sediments of West and Central Sarawak, Malaysia

NASA Astrophysics Data System (ADS)

Breitfeld, H. Tim; Galin, Thomson; Hall, Robert

2015-04-01

Sarawak is located on the northern edge of Sundaland in NW Borneo. West and Central Sarawak include parts of the Kuching and Sibu Zones. These contain remnants of several sedimentary basins with ages from Triassic to Cenozoic. New light mineral, heavy mineral and U-Pb detrital zircon ages show differences in provenance reflecting the tectonic evolution of the region. The oldest clastic sediments are Triassic (Sadong Formation and its deep marine equivalent Kuching Formation). They were sourced by a Triassic (Carnian to Norian) volcanic arc and reworked Paleoproterozoic detritus derived from Cathaysialand. The Upper Jurassic to Cretaceous Pedawan Formation is interpreted as forearc basin fill with distinctive zircon populations indicating subduction beneath present-day West Sarawak which initiated in the Late Jurassic. Subsequent subduction until the early Late Cretaceous formed the Schwaner Mountains magmatic arc. After collision of SW Borneo and other microcontinental fragments with Sundaland in the early Late Cretaceous, deep marine sedimentation (Pedawan Formation) ceased, and there was uplift forming the regional Pedawan-Kayan unconformity. Two episodes of extension followed and were responsible for basin development on land in West Sarawak from the latest Cretaceous onwards, probably in a pull-apart setting. The first episode is associated with sediments of the Kayan Group, deposited in the Latest Cretaceous (Maastrichtian) to Eocene, and the second episode with Upper Eocene sediments of the Ketungau Basin. Zircon ages indicate volcanic activity throughout the Early Cenozoic in NW Borneo, and inherited zircon ages indicate reworking of Triassic and Cretaceous rocks. A large deep marine basin, the Rajang Basin, was north of the Lupar Line Fault in Central Sarawak (Sibu Zone) from the Late Cretaceous to the Late Eocene. Zircons from sediments of the Rajang Basin indicate they have similar ages and provenance to contemporaneous terrestrial sediments of the Kayan Group and Ketungau Basin to the south, suggesting a narrow steep continental Sundaland margin at the position of the Lupar Line, and a large-scale sedimentary connection between the terrestrial and deep marine basins in the Late Cretaceous to Late Eocene. A recent reconstruction for the proto-South China Sea proposed an isolated so-called Semitau terrane colliding with SW Borneo and Sundaland in the Late Eocene. Our data show that the area of the Kuching and Sibu Zones were connected with SW Borneo and Sundaland from the Cretaceous onwards. The Cretaceous and Cenozoic sedimentary basins were sourced by alternations of Schwaner Mountains and Malay Tin Belt rocks. Our new age and provenance data cannot be explained by an isolated Semitau terrane and a Late Eocene collision.

Pythons in Burma: Short-tailed python (Reptilia: Squamata)

USGS Publications Warehouse

Zug, George R.; Gotte, Steve W.; Jacobs, Jeremy F.

2011-01-01

Short-tailed pythons, Python curtus species group, occur predominantly in the Malayan Peninsula, Sumatra, and Borneo. The discovery of an adult female in Mon State, Myanmar, led to a review of the distribution of all group members (spot-mapping of all localities of confirmed occurrence) and an examination of morphological variation in P. brongersmai. The resulting maps demonstrate a limited occurrence of these pythons within peninsular Malaya, Sumatra, and Borneo with broad absences in these regions. Our small samples limit the recognition of regional differentiation in the morphology of P. brongersmai populations; however, the presence of unique traits in the Myanmar python and its strong allopatry indicate that it is a unique genetic lineage, and it is described as Python kyaiktiyo new species.

Tisaniba, a new genus of marpissoid jumping spiders from Borneo (Araneae: Salticidae).

PubMed

Zhang, Jun-Xia; Maddison, Wayne P

2014-08-14

Six new species of marpissoid jumping spiders from Sarawak, Borneo, are described in the new genus Tisaniba Zhang & Maddison. They are the type species, T. mulu Zhang & Maddison sp. nov., as well as the species T. bijibijan Zhang & Maddison sp. nov., T. dik Zhang & Maddison sp. nov., T. kubah Zhang & Maddison sp. nov., T. selan Zhang & Maddison sp. nov., and T. selasi Zhang & Maddison sp. nov. The spiders are small and brown to black, living in leaf litter in the tropical forest. Phylogenetic analyses based on 28s and 16sND1 genes indicate that they are a distinctive group within the marpissoids. Diagnostic illustrations and photographs of living spiders are provided for all species.

Leptospirosis in a British soldier after travel to Borneo.

PubMed

Burns, Daniel S; Clay, K A; Bailey, M S

2016-12-01

Undifferentiated febrile illness in a returning soldier is a common problem encountered by serving medical officers. A 32-year-old soldier presented to Birmingham Heartlands Hospital with fever and acute kidney injury after return from Borneo. Leptospirosis was suspected and empirical antibiotics were started before subsequent confirmation by serology and PCR. Leptospirosis is common in South-East Asia, and troops exercising in jungle areas, and in the UK, are at risk. Advice, including inpatient management when appropriate, is available from the UK Role 4 Military Infectious Diseases and Tropical Medicine Service. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

A preliminary field survey of ectoparasites of rodents in urban park, Sarawak, Malaysian Borneo.

PubMed

Madinah, A; Mariana, A; Fatimah, A; Abdullah, M T

2013-09-01

A survey of ectoparasites was carried out during Eco-Zoonoses Expedition in Bukit Aup Jubilee Park (BAJP), Sibu, Sarawak, Malaysian Borneo from 5(th) to 9(th) June 2008. A total of nine individuals comprising two species of rodents were captured. The species of rodents screened for ectoparasites were Sundamys muelleri and Callosciurus notatus. Four genera and six species of ectoparasites were collected, namely, Ixodes granulatus, Ixodes sp., Laelaps sedlaceki, Laelaps nuttalli, Hoplopleura dissicula and Listrophoroides sp. Three species of the ectoparasites are known to have potential health risk. The species were Ixodes granulatus, Laelaps nuttalli and Hoplopleura dissicula. This survey produced the first list of ectoparasites in Bukit Aup Jubilee Park, Sarawak, Malaysia.

Changes in richness and community composition of ectomycorrhizal fungi among altitudinal vegetation types on Mount Kinabalu in Borneo.

PubMed

Geml, József; Morgado, Luis N; Semenova-Nelsen, Tatiana A; Schilthuizen, Menno

2017-07-01

The distribution patterns of tropical ectomycorrhizal (ECM) fungi along altitudinal gradients remain largely unknown. Furthermore, despite being an iconic site for biodiversity research, virtually nothing is known about the diversity and spatial patterns of fungi on Mt Kinabalu and neighbouring mountain ranges. We carried out deep DNA sequencing of soil samples collected between 425 and 4000 m above sea level to compare richness and community composition of ECM fungi among altitudinal forest types in Borneo. In addition, we tested whether the observed patterns are driven by habitat or by geometric effect of overlapping ranges of species (mid-domain effect). Community composition of ECM fungi was strongly correlated with elevation. In most genera, richness peaked in the mid-elevation montane forest zone, with the exception of tomentelloid fungi, which showed monotonal decrease in richness with increasing altitude. Richness in lower-mid- and mid-elevations was significantly greater than predicted under the mid-domain effect model. We provide the first insight into the composition of ECM fungal communities and their strong altitudinal turnover in Borneo. The high richness and restricted distribution of many ECM fungi in the montane forests suggest that mid-elevation peak richness is primarily driven by environmental characteristics of this habitat and not by the mid-domain effect. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

People's perceptions about the importance of forests on Borneo.

PubMed

Meijaard, Erik; Abram, Nicola K; Wells, Jessie A; Pellier, Anne-Sophie; Ancrenaz, Marc; Gaveau, David L A; Runting, Rebecca K; Mengersen, Kerrie

2013-01-01

We ascertained villagers' perceptions about the importance of forests for their livelihoods and health through 1,837 reliably answered interviews of mostly male respondents from 185 villages in Indonesian and Malaysian Borneo. Variation in these perceptions related to several environmental and social variables, as shown in classification and regression analyses. Overall patterns indicated that forest use and cultural values are highest among people on Borneo who live close to remaining forest, and especially among older Christian residents. Support for forest clearing depended strongly on the scale at which deforestation occurs. Deforestation for small-scale agriculture was generally considered to be positive because it directly benefits people's welfare. Large-scale deforestation (e.g., for industrial oil palm or acacia plantations), on the other hand, appeared to be more context-dependent, with most respondents considering it to have overall negative impacts on them, but with people in some areas considering the benefits to outweigh the costs. The interviews indicated high awareness of negative environmental impacts of deforestation, with high levels of concern over higher temperatures, air pollution and loss of clean water sources. Our study is unique in its geographic and trans-national scale. Our findings enable the development of maps of forest use and perceptions that could inform land use planning at a range of scales. Incorporating perspectives such as these could significantly reduce conflict over forest resources and ultimately result in more equitable development processes.

Cavearhynchus, a new genus of tapeworm (Cestoda: Trypanorhyncha: Pterobothriidae) from Himantura lobistoma Manjaji-Matsumoto & Last, 2006 (Rajiformes) off Borneo, including redescriptions and new records of species of Pterobothrium Diesing, 1850.

PubMed

Schaeffner, Bjoern C; Beveridge, Ian

2012-06-01

A new genus of trypanorhynch cestode is described from the tubemouth whipray Himantura lobistoma Manjaji-Matsumoto & Last, 2006 in the South China Sea off Malaysian Borneo. Cavearhynchus foveatus n. g., n. sp. possesses four pedicellate bothria in a cruciform arrangement, a heteroacanthous, heteromorphous metabasal tentacular armature with five hooks per principle row and an alternating longitudinal file of intercalary hooks on the bothrial surface of each tentacle, but lacks prebulbar organs and gland-cells within the bulbs. It, thus, closely resembles taxa belonging to the lacistorhynchoid family Pterobothriidae Pintner, 1931. However, the new genus differs from other genera within this family in the possession of bothrial pits. Although a distinguishing characteristic of the superfamily Otobothrioidea Dollfus, 1942, representatives of this group exhibit two bothria and the bothrial pits are lined with spiniform microtriches, whereas the pit-like structures.of C. foveatus n. g., n. sp. entirely lack microtriches. Redescriptions of two species of Pterobothrium, namely P. lesteri Campbell & Beveridge, 1996 and P. platycephalum (Shipley & Hornell, 1906) Dollfus, 1930 are provided from material collected off Borneo and several localities off Australia. Moreover, new host and locality records are added for P. australiense Campbell & Beveridge, 1996 and P. pearsoni (Southwell, 1929) Beveridge & Campbell, 1989.

Saving the rainforest through health care: medicine as conservation in Borneo.

PubMed

Ali, Robbie; Jacobs, Sonja M

2007-01-01

This article gives an overview of rainforest conservation as it relates to human health and describes the context, design, and implementation of the Kelay Conservation Health Program (KCHP). The KCHP is a health program for indigenous people living in a critical area of orangutan rainforest habitat in Indonesian Borneo also developed to aid conservation efforts there. Program design included consideration of both health and conservation goals, participatory planning in collaboration with the government health system, a focus on community managed health, capacity building, and adaptive management. After two years the program had, at relatively low cost, already had positive impacts on both human health (e.g., child immunization rates) and conservation (e.g., local forest protection measures, attitudes of villagers and government officials towards the implementing conservation agency).

Preliminary Cluster Analysis For Several Representatives Of Genus Kerivoula (Chiroptera: Vespertilionidae) in Borneo

NASA Astrophysics Data System (ADS)

Hasan, Noor Haliza; Abdullah, M. T.

2008-01-01

The aim of the study is to use cluster analysis on morphometric parameters within the genus Kerivoula to produce a dendrogram and to determine the suitability of this method to describe the relationship among species within this genus. A total of 15 adult male individuals from genus Kerivoula taken from sampling trips around Borneo and specimens kept at the zoological museum of Universiti Malaysia Sarawak were examined. A total of 27 characters using dental, skull and external body measurements were recorded. Clustering analysis illustrated the grouping and morphometric relationships between the species of this genus. It has clearly separated each species from each other despite the overlapping of measurements of some species within the genus. Cluster analysis provides an alternative approach to make a preliminary identification of a species.

A review of Bornean Micronectidae (Hemiptera, Heteroptera, Nepomorpha) with descriptions of two new species from Sabah, Malaysia1

PubMed Central

Chen, Ping-ping; Nieser, Nico; Lapidin, Johnny

2015-01-01

Abstract Previous research of Bornean Micronectidae Jaczewski, 1924 (pygmy water boatmen) is summarized based on the data from the literature and recent work. All the Bornean micronectids belong to the genus Micronecta Kirkaldy, 1897. Descriptions or redescriptions and a key to the eight species, which have so far been found in Borneo are presented, namely Micronecta decorata Lundblad, 1933, Micronecta ludibunda Breddin, 1905, Micronecta liewi sp. n., Micronecta lakimi sp. n., Micronecta lumutensis Chen, Nieser & Lansbury, 2008, Micronecta skutalis Nieser & Chen, 1999, Micronecta kymatista Nieser & Chen, 1999) and Micronecta quadristrigata Breddin, 1905. The synonyms are indicated under each species. To facilitate identification, illustrations and habitus photos are provided. The faunistic components of Micronectidae in Borneo are discussed from a zoogeographic point of view. PMID:25987878

A new species of Lobocheilos (Teleostei: Cyprinidae) from East Kalimantan, Indonesian Borneo.

PubMed

Ciccotto, Patrick J; Tan, Heok Hui

2018-03-22

Lobocheilos aurolineatus, new species, is described from the Mahakam River basin in East Kalimantan, Indonesian Borneo. It is distinguished from all other species of Lobocheilos except for L. ixocheilos and L. tenura in having one pair of barbels (maxillary) and by the presence of a broad, black midlateral stripe, approximately ¾ scale height in thickness, extending from the operculum to the caudal-peduncle base. Lobocheilos aurolineatus differs from both species in possessing a thin cream to yellow stripe on the anterior ⅔ of the flank, separating the black midlateral stripe from the brown dorso-lateral scales, and by a smaller mouth width (23.5-29.9% head length in L. aurolineatus vs. 32.1-45.0% and 34.4-46.4% head length in L. ixocheilos and L. tenura, respectively).

Characteristics of Borneo and Sumatra fire plume heights and smoke clouds and their impact on regional El Niño-induced drought

NASA Astrophysics Data System (ADS)

Tosca, Michael; Randerson, James; Zender, Cs; Flanner, Mg; Nelson, Dl; Diner, Dj; Rasch, Pj; Logan, Ja

2010-05-01

During the dry season, anthropogenic fires in tropical forests and peatlands in equatorial Asia produce regionally expansive smoke clouds. We estimated the altitude of smoke clouds from these fires, characterized the sensitivity of these clouds to regional drought and El Niño variability, and investigated their effect on climate. We used the MISR satellite product and MISR INteractive eXplorer (MINX) software to estimate the heights of 382 smoke plumes (smoke with a visible surface source and transport direction) on Borneo and 143 plumes on Sumatra for 2001—2009. In addition, we estimated the altitudes of 10 smoke clouds (opaque regions of smoke with no detectable surface source or transport direction) on Borneo during 2006. Most smoke plumes (84%) were observed during El Niño events (2002, 2004, 2006, and 2009); this is consistent with higher numbers of active fire detections and larger aerosol optical depths observed during El Niño years. Annually averaged plume heights on Borneo were positively correlated to the Oceanic Niño Index (ONI), an indicator of El Niño (r2 = 0.53), and the mean plume height for all El Niño years was 772.5 ± 15.9m, compared to 711.4 ± 28.7m for non-El Niño years. The median altitude of the 10 smoke clouds observed on Borneo during 2006 was 1313m, considerably higher than the median of nearby smoke plumes (787m). The difference in height between individual plumes and regional smoke clouds may be related to deeper planetary boundary layers and injection heights later in the afternoon (after the 10:30am MISR overpass) or other atmospheric mixing processes that occur on synoptic timescales. We investigated the climate response to these expansive smoke clouds using the Community Atmosphere Model (CAM). Climate responses to smoke from two 30 year simulations were compared: one simulation was forced with fire emissions typical of a dry (El Niño) burning year, while the other was forced with emissions typical of a low (La Niña) burning year. Fire aerosols reduced net shortwave radiation at the surface during August-October by an average of 10% in the region encompassing most of Sumatra and Borneo (90°E-120°E, 5° S-5°N). The reductions in net radiation cooled both sea surface temperature (0.5 ± 0.3°C) and land air temperature (0.4 ± 0.2°C) during these months. Tropospheric heating from black carbon (BC) absorption increased substantially (20.5 ± 9.3 W m-2) and was balanced by an overall reduction in latent heating in the mid-troposphere. The combination of decreased SSTs and increased atmospheric heating reduced regional precipitation by 0.9 ± 0.6 mm d-1 (10%). The vulnerability of ecosystems to fire was enhanced because the decreases in precipitation exceeded those for evapotranspiration. Together, the satellite and modeling results imply a possible positive feedback loop in which anthropogenic burning in the region intensifies drought stress during El Niño.

New Insight Into the Crustal Structure of the Continental Margin offshore NW Sabah/Borneo

NASA Astrophysics Data System (ADS)

Barckhausen, U.; Franke, D.; Behain, D.; Meyer, H.

2002-12-01

The continental margin offshore NW Sabah/Borneo (Malaysia) has been investigated with reflection and refraction seismics, magnetics, and gravity during the recent cruise BGR01-POPSCOMS. A total of 4000 km of geophysical profiles has been acquired, thereof 2900 km with reflection seismics. The focus of investigations was on the deep water areas. The margin looks like a typical accretionary margin and was presumably formed during the subduction of a proto South China Sea. Presently, no horizontal movements between the two plates are being observed. Like in major parts of the South China Sea, the area seaward of the Sabah Trough consists of extended continental lithosphere which is characterised by a pattern of rotated fault blocks and half grabens and a carbonate platform of Early Oligocene to Early Miocene age. We found evidence that the continental crust also underlies the Sabah Trough and the adjacent continental slope, a fact that raises many questions about the tectonic history and development of this margin. The tectonic pattern of the Dangerous Grounds' extended continental crust can be traced a long way landward of the Sabah Trough beneath the sedimentary succession of the upper plate. The magnetic anomalies which are dominated by the magnetic signatures of relatively young volcanic features also continue under the continental slope. The sedimentary rocks of the upper plate, in contrast, seem to generate hardly any magnetic anomalies. Based on the new data we propose the following scenario for the development of the NW Sabah continental margin: Seafloor spreading in the present South China Sea started at about 30 Ma in the Late Oligocene. The spreading process separated the Dangerous Grounds area from the SE Asian continent and ceased in late Early Miocene when the oceanic crust of the proto South China Sea was fully subducted in eastward direction along the Borneo-Palawan Trough. During Lower and/or Middle Miocene, Borneo rotated counterclockwise and was thrusted onto the edge of the rifted continental block of the Dangerous Grounds. The subducted oceanic crust of the proto South China Sea must today be located below the Eastern part of Sabah and not along the present NW Sabah Trough.

Dressed in black. A New Ansonia Stoliczka, 1870 (Lissamphibia: Anura: Bufonidae) from Gunung Murud, Sarawak, East Malaysia (Borneo).

PubMed

Hertwig, Stefan T; Min, Pui Yong; Haas, Alexander; Das, Indraneil

2014-06-10

A new species of stream toad of the genus Ansonia is described from Gunung Murud, Pulong Tau National Park, of northern Sarawak, Malaysia, Borneo. Ansonia vidua, sp. nov., is morphologically distinguished from its Bornean congeners by the following combination of characters: medium size (SVL of adult females 33.5-34.4 mm); body uniformly black-brown in life; absence of a visible pattern on dorsum or limbs; presence of two low interorbital ridges; shagreened skin on dorsum, sides and upper surfaces of the limbs with numerous homogeneously small, rounded warts; first finger shorter than second; reduced webbing between the toes and an absence of a sharp tarsal ridge. Uncorrected genetic distances between related taxa of > 4.3% in 16S rRNA gene support its status as a hitherto undescribed species.

Two new species of diminutive leaf-litter skinks (Squamata: Scincidae: Tytthoscincus) from Gunung Penrissen, Sarawak, Malaysia (northern Borneo).

PubMed

Karin, Benjamin R; Das, Indraneil; Bauer, Aaron M

2016-03-22

We describe two new species of skinks from Gunung Penrissen, Sarawak, Malaysia, in northern Borneo, Tytthoscincus batupanggah sp. nov. and T. leproauricularis sp. nov. Morphological and molecular analyses both corroborate the two new species as unique compared to all other Tytthoscincus and additional Sphenomorphus that are candidates for taxonomic placement in the genus Tytthoscincus. Despite their phenotypic similarity and sympatric distribution, a molecular analysis shows that the new species are not sister taxa and exhibit a deep genetic divergence between each of their respective sister taxa. We discuss how historical climatic and geographic processes may have led to the co-distribution of two relatively distantly related phenotypically similar species. In light of these discoveries, we also emphasize the importance of conserving primary montane tropical rainforest for maintaining species diversity.

Update: outbreak of acute febrile illness among athletes participating in Eco-Challenge-Sabah 2000--Borneo, Malaysia, 2000.

PubMed

2001-01-19

During September 7-11, 2000, CDC was notified by the Idaho Department of Health, the Los Angeles County Department of Health Services, and the GeoSentinel Global Surveillance Network of at least 20 cases of acute febrile illness in three countries; all ill patients had participated in the Eco-Challenge-Sabah 2000 multisport expedition race in Borneo, Malaysia, during August 21-September 3, 2000. Participants included athletes from 29 U.S. states and 26 countries. This report updates the ongoing investigation of this outbreak through December 2, which suggests that Leptospira were the cause of illness and that water from the Segama River was the primary source of infection. Participants in adventure sports and exotic tourism should be aware of potential exposure to unusual and emerging infectious agents.

People’s Perceptions about the Importance of Forests on Borneo

PubMed Central

Meijaard, Erik; Abram, Nicola K.; Wells, Jessie A.; Pellier, Anne-Sophie; Ancrenaz, Marc; Gaveau, David L. A.; Runting, Rebecca K.; Mengersen, Kerrie

2013-01-01

We ascertained villagers’ perceptions about the importance of forests for their livelihoods and health through 1,837 reliably answered interviews of mostly male respondents from 185 villages in Indonesian and Malaysian Borneo. Variation in these perceptions related to several environmental and social variables, as shown in classification and regression analyses. Overall patterns indicated that forest use and cultural values are highest among people on Borneo who live close to remaining forest, and especially among older Christian residents. Support for forest clearing depended strongly on the scale at which deforestation occurs. Deforestation for small-scale agriculture was generally considered to be positive because it directly benefits people’s welfare. Large-scale deforestation (e.g., for industrial oil palm or acacia plantations), on the other hand, appeared to be more context-dependent, with most respondents considering it to have overall negative impacts on them, but with people in some areas considering the benefits to outweigh the costs. The interviews indicated high awareness of negative environmental impacts of deforestation, with high levels of concern over higher temperatures, air pollution and loss of clean water sources. Our study is unique in its geographic and trans-national scale. Our findings enable the development of maps of forest use and perceptions that could inform land use planning at a range of scales. Incorporating perspectives such as these could significantly reduce conflict over forest resources and ultimately result in more equitable development processes. PMID:24039845

Ecohydrology: When will the jungle burn?

NASA Astrophysics Data System (ADS)

Bowman, David

2017-06-01

Fire weather indices are unsuited to forecast fire in tropical rainforests. Now research shows the area burnt across Borneo is related to drought-depleted water tables, presenting the opportunity to predict fire danger in these environments.

Clutch size declines with elevation in tropical birds

USGS Publications Warehouse

Boyce, A.J.; Freeman, Benjamin G.; Mitchell, Adam E.; Martin, Thomas E.

2015-01-01

Clutch size commonly decreases with increasing elevation among temperate-zone and subtropical songbird species. Tropical songbirds typically lay small clutches, thus the ability to evolve even smaller clutch sizes at higher elevations is unclear and untested. We conducted a comparative phylogenetic analysis using data gathered from the literature to test whether clutch size varied with elevation among forest passerines from three tropical biogeographic regions—the Venezuelan Andes and adjacent lowlands, Malaysian Borneo, and New Guinea. We found a significant negative effect of elevation on variation in clutch size among species. We found the same pattern using field data sampled across elevational gradients in Venezuela and Malaysian Borneo. Field data were not available for New Guinea. Both sets of results demonstrate that tropical montane species across disparate biogeographic realms lay smaller clutches than closely related low-elevation species. The environmental sources of selection underlying this pattern remain uncertain and merit further investigation.

Phylogeographic Evidence for 2 Genetically Distinct Zoonotic Plasmodium knowlesi Parasites, Malaysia.

PubMed

Yusof, Ruhani; Ahmed, Md Atique; Jelip, Jenarun; Ngian, Hie Ung; Mustakim, Sahlawati; Hussin, Hani Mat; Fong, Mun Yik; Mahmud, Rohela; Sitam, Frankie Anak Thomas; Japning, J Rovie-Ryan; Snounou, Georges; Escalante, Ananias A; Lau, Yee Ling

2016-08-01

Infections of humans with the zoonotic simian malaria parasite Plasmodium knowlesi occur throughout Southeast Asia, although most cases have occurred in Malaysia, where P. knowlesi is now the dominant malaria species. This apparently skewed distribution prompted an investigation of the phylogeography of this parasite in 2 geographically separated regions of Malaysia, Peninsular Malaysia and Malaysian Borneo. We investigated samples collected from humans and macaques in these regions. Haplotype network analyses of sequences from 2 P. knowlesi genes, type A small subunit ribosomal 18S RNA and cytochrome c oxidase subunit I, showed 2 genetically distinct divergent clusters, 1 from each of the 2 regions of Malaysia. We propose that these parasites represent 2 distinct P. knowlesi types that independently became zoonotic. These types would have evolved after the sea-level rise at the end of the last ice age, which separated Malaysian Borneo from Peninsular Malaysia.

Phylogeographic Evidence for 2 Genetically Distinct Zoonotic Plasmodium knowlesi Parasites, Malaysia

PubMed Central

Yusof, Ruhani; Ahmed, Md Atique; Jelip, Jenarun; Ngian, Hie Ung; Mustakim, Sahlawati; Hussin, Hani Mat; Fong, Mun Yik; Mahmud, Rohela; Sitam, Frankie Anak Thomas; Japning, J. Rovie-Ryan; Snounou, Georges; Escalante, Ananias A.

2016-01-01

Infections of humans with the zoonotic simian malaria parasite Plasmodium knowlesi occur throughout Southeast Asia, although most cases have occurred in Malaysia, where P. knowlesi is now the dominant malaria species. This apparently skewed distribution prompted an investigation of the phylogeography of this parasite in 2 geographically separated regions of Malaysia, Peninsular Malaysia and Malaysian Borneo. We investigated samples collected from humans and macaques in these regions. Haplotype network analyses of sequences from 2 P. knowlesi genes, type A small subunit ribosomal 18S RNA and cytochrome c oxidase subunit I, showed 2 genetically distinct divergent clusters, 1 from each of the 2 regions of Malaysia. We propose that these parasites represent 2 distinct P. knowlesi types that independently became zoonotic. These types would have evolved after the sea-level rise at the end of the last ice age, which separated Malaysian Borneo from Peninsular Malaysia. PMID:27433965

Forest contraction in north equatorial Southeast Asia during the Last Glacial Period

PubMed Central

Wurster, Christopher M.; Bird, Michael I.; Bull, Ian D.; Creed, Frances; Bryant, Charlotte; Dungait, Jennifer A. J.; Paz, Victor

2010-01-01

Today, insular Southeast Asia is important for both its remarkably rich biodiversity and globally significant roles in atmospheric and oceanic circulation. Despite the fundamental importance of environmental history for diversity and conservation, there is little primary evidence concerning the nature of vegetation in north equatorial Southeast Asia during the Last Glacial Period (LGP). As a result, even the general distribution of vegetation during the Last Glacial Maximum is debated. Here we show, using the stable carbon isotope composition of ancient cave guano profiles, that there was a substantial forest contraction during the LGP on both peninsular Malaysia and Palawan, while rainforest was maintained in northern Borneo. These results directly support rainforest “refugia” hypotheses and provide evidence that environmental barriers likely reduced genetic mixing between Borneo and Sumatra flora and fauna. Moreover, it sheds light on possible early human dispersal events. PMID:20660748

Serendipity at the Smithsonian: The 107-year journey of Rhipidocyrtus muiri Falin & Engel, new genus and species (Ripidiinae, Ripidiini), from jungle beast to valid taxon

PubMed Central

Falin, Zachary H.; Engel, Michael S.

2014-01-01

Abstract The long and tortuous history of an enigmatic and rare new genus and species of ripidiine wedge beetle (Ripiphoridae: Ripidiinae: Ripidiini) from Borneo is discussed and the taxon described and figured as Rhipidocyrtus muiri Falin & Engel, gen. n. and sp. n. The holotype male, and only known specimen, was collected 107 years ago in Borneo but subsequent to this it was transferred among early researchers in the early 1900s. The specimen was dissected and many portions slide mounted, but these were disassociated from the pinned body for more than a generation. A happenstance encounter led to the rediscovery and reassociation of the body and slide-mounted abdomen and other sclerites in 2011, and to its eventual description herein. Ripidiine diversity is briefly discussed and comparisons made between Rhipidocyrtus and other members of the subfamily. PMID:25061398

Serendipity at the Smithsonian: The 107-year journey of Rhipidocyrtus muiri Falin & Engel, new genus and species (Ripidiinae, Ripidiini), from jungle beast to valid taxon.

PubMed

Falin, Zachary H; Engel, Michael S

2014-01-01

THE LONG AND TORTUOUS HISTORY OF AN ENIGMATIC AND RARE NEW GENUS AND SPECIES OF RIPIDIINE WEDGE BEETLE (RIPIPHORIDAE: Ripidiinae: Ripidiini) from Borneo is discussed and the taxon described and figured as Rhipidocyrtus muiri Falin & Engel, gen. n. and sp. n. The holotype male, and only known specimen, was collected 107 years ago in Borneo but subsequent to this it was transferred among early researchers in the early 1900s. The specimen was dissected and many portions slide mounted, but these were disassociated from the pinned body for more than a generation. A happenstance encounter led to the rediscovery and reassociation of the body and slide-mounted abdomen and other sclerites in 2011, and to its eventual description herein. Ripidiine diversity is briefly discussed and comparisons made between Rhipidocyrtus and other members of the subfamily.

Malaria remedies of the Kenyah of the Apo Kayan, East Kalimantan, Indonesian Borneo: a quantitative assessment of local consensus as an indicator of biological efficacy.

PubMed

Leaman, D J; Arnason, J T; Yusuf, R; Sangat-Roemantyo, H; Soedjito, H; Angerhofer, C K; Pezzuto, J M

1995-11-17

Traditional remedies have been a source of important antimalarial drugs and continue to provide novel and effective treatments, both where pharmaceuticals are not available and where the disease is increasingly resistant to commonly prescribed drugs. The Kenyah of the Apo Kayan, a remote forested plateau in Indonesian Borneo, use 17 malaria remedies derived from natural sources. A quantitative analysis of the relationship between a 'local importance value' index for each malaria remedy (IVmal) and inhibition of cultured Plasmodium falciparum by ethanolic extracts supports the hypothesis that the degree of local consensus about a given remedy is a good indicator of its potential biological efficacy. Our results confirm the rational selection and use of traditional remedies for malaria by the Kenyah. We have identified target species for further research directed toward safe and effective treatments for malaria.

A new species of Leptolalax (Anura: Megophryidae) from Gunung Mulu National Park, Sarawak, East Malaysia (Borneo).

PubMed

Dehling, J Maximilian; Matsui, Masafumi

2013-01-01

We describe a new species of Leptolalax from Gunung Mulu National Park in eastern Sarawak, Malaysian Borneo. The new species had been assigned to Leptolalax dringi and Leptolalax gracilis in the past. It is shown to differ from both these species and from all other species of the genus by a unique combination of morphological characters including large body size, rounded snout, interorbital distance being smaller than width of upper eyelid, bipartite subgular vocal sac in males, basal toe webbing, shagreened skin with tiny tubercles on dorsum and dorsal side of head, angled supratympanic fold, small pectoral glands, absence of supraaxillary glands and ventrolateral glandular ridges, spotted venter, advertisement call consisting of long series of 8-289 notes, each composed of three or four pulses, and dominant frequency at 7225-9190 Hz, with prominent frequency modulation.

Soils on exposed Sunda Shelf shaped biogeographic patterns in the equatorial forests of Southeast Asia

PubMed Central

Slik, J. W. Ferry; Aiba, Shin-Ichiro; Bastian, Meredith; Brearley, Francis Q.; Cannon, Charles H.; Eichhorn, Karl A. O.; Fredriksson, Gabriella; Kartawinata, Kuswata; Laumonier, Yves; Mansor, Asyraf; Marjokorpi, Antti; Meijaard, Erik; Morley, Robert J.; Nagamasu, Hidetoshi; Nilus, Reuben; Nurtjahya, Eddy; Payne, John; Permana, Andrea; Poulsen, Axel D.; Raes, Niels; Riswan, Soedarsono; van Schaik, Carel P.; Sheil, Douglas; Sidiyasa, Kade; Suzuki, Eizi; van Valkenburg, Johan L. C. H.; Webb, Campbell O.; Wich, Serge; Yoneda, Tsuyoshi; Zakaria, Rahmad; Zweifel, Nicole

2011-01-01

The marked biogeographic difference between western (Malay Peninsula and Sumatra) and eastern (Borneo) Sundaland is surprising given the long time that these areas have formed a single landmass. A dispersal barrier in the form of a dry savanna corridor during glacial maxima has been proposed to explain this disparity. However, the short duration of these dry savanna conditions make it an unlikely sole cause for the biogeographic pattern. An additional explanation might be related to the coarse sandy soils of central Sundaland. To test these two nonexclusive hypotheses, we performed a floristic cluster analysis based on 111 tree inventories from Peninsular Malaysia, Sumatra, and Borneo. We then identified the indicator genera for clusters that crossed the central Sundaland biogeographic boundary and those that did not cross and tested whether drought and coarse-soil tolerance of the indicator genera differed between them. We found 11 terminal floristic clusters, 10 occurring in Borneo, 5 in Sumatra, and 3 in Peninsular Malaysia. Indicator taxa of clusters that occurred across Sundaland had significantly higher coarse-soil tolerance than did those from clusters that occurred east or west of central Sundaland. For drought tolerance, no such pattern was detected. These results strongly suggest that exposed sandy sea-bed soils acted as a dispersal barrier in central Sundaland. However, we could not confirm the presence of a savanna corridor. This finding makes it clear that proposed biogeographic explanations for plant and animal distributions within Sundaland, including possible migration routes for early humans, need to be reevaluated. PMID:21746913

Evolutionary and ecological forces influencing population diversification in Bornean montane passerines.

PubMed

Chua, Vivien L; Smith, Brian Tilston; Burner, Ryan C; Rahman, Mustafa Abdul; Lakim, Maklarin; Prawiradilaga, Dewi M; Moyle, Robert G; Sheldon, Frederick H

2017-08-01

The mountains of Borneo are well known for their high endemicity and historical role in preserving Southeast Asian rainforest biodiversity, but the diversification of populations inhabiting these mountains is poorly studied. Here we examine the genetic structure of 12 Bornean montane passerines by comparing complete mtDNA ND2 gene sequences of populations spanning the island. Maximum likelihood and Bayesian phylogenetic trees and haplotype networks are examined for common patterns that might signal important historical events or boundaries to dispersal. Morphological and ecological characteristics of each species are also examined using phylogenetic generalized least-squares (PGLS) for correlation with population structure. Populations in only four of the 12 species are subdivided into distinct clades or haplotype groups. Although this subdivision occurred at about the same time in each species (ca. 0.6-0.7Ma), the spatial positioning of the genetic break differs among the species. In two species, northeastern populations are genetically divergent from populations elsewhere on the island. In the other two species, populations in the main Bornean mountain chain, including the northeast, are distinct from those on two isolated peaks in northwestern Borneo. We suggest different historical forces played a role in shaping these two distributions, despite commonality in timing. PGLS analysis showed that only a single characteristic-hand-wing index-is correlated with population structure. Birds with longer wings, and hence potentially more dispersal power, have less population structure. To understand historical forces influencing montane population structure on Borneo, future studies must compare populations across the entirety of Sundaland. Copyright © 2017 Elsevier Inc. All rights reserved.

Phylogeography of the termite Macrotermes gilvus and insight into ancient dispersal corridors in Pleistocene Southeast Asia

PubMed Central

Othman, Ahmad Sofiman; Lee, Chow-Yang

2017-01-01

Dispersal of soil-dwelling organisms via the repeatedly exposed Sunda shelf through much of the Pleistocene in Southeast Asia has not been studied extensively, especially for invertebrates. Here we investigated the phylogeography of an endemic termite species, Macrotermes gilvus (Hagen), to elucidate the spatiotemporal dynamics of dispersal routes of terrestrial fauna in Pleistocene Southeast Asia. We sampled 213 termite colonies from 66 localities throughout the region. Independently inherited microsatellites and mtDNA markers were used to infer the phylogeographic framework of M. gilvus. Discrete phylogeographic analysis and molecular dating based on fossil calibration were used to infer the dynamics of M. gilvus dispersal in time and space across Southeast Asia. We found that the termite dispersal events were consistently dated within the Pleistocene time frame. The dispersal pattern was multidirectional, radiating eastwards and southwards out of Indochina, which was identified as the origin for dispersal events. We found no direct dispersal events between Sumatra and Borneo despite the presence of a terrestrial connection between them during the Pleistocene. Instead, central Java served as an important link allowing termite colonies to be established in Borneo and Sumatra. Our findings support the hypothesis of a north-south dispersal corridor in Southeast Asia and suggest the presence of alternative dispersal routes across Sundaland during the Pleistocene. For the first time, we also propose that a west-east dispersal through over-water rafting likely occurred across the Pleistocene South China Sea. We found at least two independent entry routes for terrestrial species to infiltrate Sumatra and Borneo at different times. PMID:29186140

Drainage basin and topographic analysis of a tropical landscape: Insights into surface and tectonic processes in northern Borneo

NASA Astrophysics Data System (ADS)

Mathew, Manoj Joseph; Menier, David; Siddiqui, Numair; Ramkumar, Mu.; Santosh, M.; Kumar, Shashi; Hassaan, Muhammad

2016-07-01

We investigated the recent landscape development of Borneo through geomorphic analysis of two large drainage basins (Rajang and Baram basins). The extraction of morphometric parameters utilizing digital terrain data in a GIS environment, focusing on hydrography (stream length-gradient index, ratio of valley floor width to valley height, and transverse topographic symmetry factor) and topography (local relief and relief anomaly), was carried out in order to elucidate processes governing drainage and landscape evolution. Anomalously high and low values of stream length-gradient indices of main tributary streams associated with faults and multiple knick-points along the channel profiles are linked to deformation events. The development of deeply incised V-shaped valleys show enhanced incision capability of streams in response to steepening of hillslope gradients following tectonic inputs. Deflection of streams and probable dynamic reorganization of the drainage system through stream capture processes as feedbacks to tectonic uplift and orographic effect are observed. Local relief and relief anomaly maps highlight the presence of preserved elevation-accordant relict portions of landscapes characterized by low amplitude relief, nested between ridgelines in regions of complex folding. Our results reveal dynamic geomorphic adjustment of the landscape due to perturbations in tectonic and climatic boundary conditions. The implication is that the landscape of north Borneo experienced a tectonic phase of rapid uplift after 5 Ma and undergoes active folding of the Rajang Group thrust belts in the present-day. Active shortening combined with high rates of denudation in Sarawak, demonstrates transience emphasized by the drainage system attempting to adjust to tectonic and climatic forcing.

Plasmodium knowlesi malaria in humans is widely distributed and potentially life-threatening

PubMed Central

Cox-Singh, Janet; Davis, Timothy M. E.; Lee, Kim-Sung; Shamsul, Sunita S. G.; Matusop, Asmad; Ratnam, Shanmuga; Rahman, Hasan A.; Conway, David J; Singh, Balbir

2008-01-01

Background Until recently, Plasmodium knowlesi malaria in humans was misdiagnosed as P. malariae. The present objectives were to determine the geographic distribution of P. knowlesi in the human population in Malaysia and to investigate four suspected fatal cases. Methods Sensitive and specific nested-PCR was used to identify all Plasmodium species present in blood from i) 960 patients with malaria hospitalized in Sarawak, Malaysian Borneo from 2001-2006, ii) 54 P. malariae archival blood-films from 15 districts in Sabah, Malaysian Borneo (2003–2005) and four districts in Pahang, Peninsular Malaysia (2004–2005), and iii) suspected knowlesi fatalities. In the four latter cases, available clinical and laboratory data were reviewed. Results P. knowlesi DNA was detected in 266 of 960 (27·7%) of the samples from Sarawak hospitals, 41 of 49 (83·7%) from Sabah and all 5 from Pahang. Only P. knowlesi DNA was detected in archival blood films from the 4 fatal cases. All were hyperparasitemic and developed marked hepatorenal dysfunction. Conclusions Human infections with P. knowlesi, commonly misidentified as the more benign P. malariae, are widely distributed across Malaysian Borneo and extend to Peninsular Malaysia. Because P. knowlesi replicates every 24 hours, rapid diagnosis and prompt effective treatment are essential. In the absence of a specific routine diagnostic test for knowlesi malaria, we recommend that patients in, or who have travelled to, South-east Asia who are ill with a ‘P. malariae’ hyperparasitemia diagnosis by microscopy should receive intensive management as appropriate for severe falciparum malaria. PMID:18171245

Burkholderia pseudomallei Isolates from Sarawak, Malaysian Borneo, Are Predominantly Susceptible to Aminoglycosides and Macrolides

PubMed Central

Podin, Yuwana; Sarovich, Derek S.; Price, Erin P.; Kaestli, Mirjam; Mayo, Mark; Hii, KingChing; Ngian, HieUng; Wong, SeeChang; Wong, IngTien; Wong, JinShyan; Mohan, Anand; Ooi, MongHow; Fam, TemLom; Wong, Jack; Tuanyok, Apichai; Keim, Paul; Giffard, Philip M.

2014-01-01

Melioidosis is a potentially fatal disease caused by the saprophytic bacterium Burkholderia pseudomallei. Resistance to gentamicin is generally a hallmark of B. pseudomallei, and gentamicin is a selective agent in media used for diagnosis of melioidosis. In this study, we determined the prevalence and mechanism of gentamicin susceptibility found in B. pseudomallei isolates from Sarawak, Malaysian Borneo. We performed multilocus sequence typing and antibiotic susceptibility testing on 44 B. pseudomallei clinical isolates from melioidosis patients in Sarawak district hospitals. Whole-genome sequencing was used to identify the mechanism of gentamicin susceptibility. A novel allelic-specific PCR was designed to differentiate gentamicin-sensitive isolates from wild-type B. pseudomallei. A reversion assay was performed to confirm the involvement of this mechanism in gentamicin susceptibility. A substantial proportion (86%) of B. pseudomallei clinical isolates in Sarawak, Malaysian Borneo, were found to be susceptible to the aminoglycoside gentamicin, a rare occurrence in other regions where B. pseudomallei is endemic. Gentamicin sensitivity was restricted to genetically related strains belonging to sequence type 881 or its single-locus variant, sequence type 997. Whole-genome sequencing identified a novel nonsynonymous mutation within amrB, encoding an essential component of the AmrAB-OprA multidrug efflux pump. We confirmed the role of this mutation in conferring aminoglycoside and macrolide sensitivity by reversion of this mutation to the wild-type sequence. Our study demonstrates that alternative B. pseudomallei selective media without gentamicin are needed for accurate melioidosis laboratory diagnosis in Sarawak. This finding may also have implications for environmental sampling of other locations to test for B. pseudomallei endemicity. PMID:24145517

Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides.

PubMed

Podin, Yuwana; Sarovich, Derek S; Price, Erin P; Kaestli, Mirjam; Mayo, Mark; Hii, KingChing; Ngian, Hieung; Wong, SeeChang; Wong, IngTien; Wong, JinShyan; Mohan, Anand; Ooi, MongHow; Fam, TemLom; Wong, Jack; Tuanyok, Apichai; Keim, Paul; Giffard, Philip M; Currie, Bart J

2014-01-01

Melioidosis is a potentially fatal disease caused by the saprophytic bacterium Burkholderia pseudomallei. Resistance to gentamicin is generally a hallmark of B. pseudomallei, and gentamicin is a selective agent in media used for diagnosis of melioidosis. In this study, we determined the prevalence and mechanism of gentamicin susceptibility found in B. pseudomallei isolates from Sarawak, Malaysian Borneo. We performed multilocus sequence typing and antibiotic susceptibility testing on 44 B. pseudomallei clinical isolates from melioidosis patients in Sarawak district hospitals. Whole-genome sequencing was used to identify the mechanism of gentamicin susceptibility. A novel allelic-specific PCR was designed to differentiate gentamicin-sensitive isolates from wild-type B. pseudomallei. A reversion assay was performed to confirm the involvement of this mechanism in gentamicin susceptibility. A substantial proportion (86%) of B. pseudomallei clinical isolates in Sarawak, Malaysian Borneo, were found to be susceptible to the aminoglycoside gentamicin, a rare occurrence in other regions where B. pseudomallei is endemic. Gentamicin sensitivity was restricted to genetically related strains belonging to sequence type 881 or its single-locus variant, sequence type 997. Whole-genome sequencing identified a novel nonsynonymous mutation within amrB, encoding an essential component of the AmrAB-OprA multidrug efflux pump. We confirmed the role of this mutation in conferring aminoglycoside and macrolide sensitivity by reversion of this mutation to the wild-type sequence. Our study demonstrates that alternative B. pseudomallei selective media without gentamicin are needed for accurate melioidosis laboratory diagnosis in Sarawak. This finding may also have implications for environmental sampling of other locations to test for B. pseudomallei endemicity.

Indonesian Islands as seen from Gemini 11 spacecraft

NASA Image and Video Library

1966-09-14

S66-54692 (14 Sept. 1966) --- Indonesian Islands (partial cloud cover): Sumatra, Java, Bali, Borneo, and Sumbawa, as photographed from the Gemini-11 spacecraft during its 26th revolution of Earth, at an altitude of 570 nautical miles. Photo credit: NASA

Borneo on Fire

Atmospheric Science Data Center

2016-12-23

... the land surface, meaning it had the potential to affect air quality not only locally but as far as 1,000 miles (1,600 kilometers) away in Malaysia. For several weeks, episodes of hazardous pollution from the heavy smoke have been causing emergency school closures and ...

Post-Jurassic tectonic evolution of Southeast Asia

NASA Astrophysics Data System (ADS)

Zahirovic, Sabin; Seton, Maria; Dietmar Müller, R.; Flament, Nicolas

2014-05-01

The accretionary growth of Asia, linked to long-term convergence between Eurasia, Gondwana-derived blocks and the Pacific, resulted in a mosaic of terranes for which conflicting tectonic interpretations exist. Here, we propose solutions to a number of controversies related to the evolution of Sundaland through a synthesis of published geological data and plate reconstructions that reconcile both geological and geophysical constraints with plate driving forces. We propose that West Sulawesi, East Java and easternmost Borneo rifted from northern Gondwana in the latest Jurassic, collided with an intra-oceanic arc at ~115 Ma and subsequently sutured to Sundaland by 80 Ma. Although recent models argue that the Southwest Borneo core accreted to Sundaland at this time, we use volcanic and biogeographic constraints to show that the core of Borneo was on the Asian margin since at least the mid Jurassic. This northward transfer of Gondwana-derived continental fragments required a convergent plate boundary in the easternmost Tethys that we propose gave rise to the Philippine Archipelago based on the formation of latest Jurassic-Early Cretaceous supra-subduction zone ophiolites on Halmahera, Obi Island and Luzon. The Late Cretaceous marks the shift from Andean-style subduction to back-arc opening on the east Asian margin. Arc volcanism along South China ceased by ~60 Ma due to the rollback of the Izanagi slab, leading to the oceanward migration of the volcanic arc and the opening of the Proto South China Sea (PSCS). We use the Apennines-Tyrrhenian system in the Mediterranean as an analogue to model this back-arc. Continued rollback detaches South Palawan, Mindoro and the Semitau continental blocks from the stable east Asian margin and transfers them onto Sundaland in the Eocene to produce the Sarawak Orogeny. The extrusion of Indochina and subduction polarity reversal along northern Borneo opens the South China Sea and transfers the Dangerous Grounds-Reed Bank southward to terminate PSCS south-dipping subduction and culminates in the Sarawak Orogeny on Borneo and ophiolite obduction on Palawan. We account for the regional plate reorganizations related to the initiation of Pacific subduction along the Izu-Bonin-Mariana Arc, the extrusion tectonics resulting from the India-Eurasia collision, and the shift from basin extension to inversion on Sundaland as an indicator of collision between the Australian continent and the active Asian margin. We generate continuously closing and evolving plate boundaries, seafloor age-grids and global plate velocity fields using the open-source and cross-platform GPlates plate reconstruction software. We link our plate motions to numerical mantle flow models in order to predict mantle structure at present-day that can be qualitatively compared to P- and S- wave seismic tomography models. This method allows us to analyse the evolution of the mantle related to Tethyan and Pacific subduction and to test alternative plate reconstructions. This iterative approach can be used to improve plate reconstructions in the absence of preserved seafloor and conjugate passive margins of continental blocks, which may have been destroyed or highly deformed by multiple episodes of accretion along the Asian margins.

Luminescent Mycena: new and noteworthy species

Treesearch

Dennis E. Desjardin; D. Jean Lodge; Cassius V. Stevani; Eiji Nagasawa

2010-01-01

Seven species of Mycena are reported as luminescent, representing specimens collected in Belize, Brazil, Dominican Republic, Jamaica, Japan (Bonin Islands), Malaysia (Borneo) and Puerto Rico. Four of them represent new species (Mycena luxaeterna, M. luxarboricola, M. luxperpetua, M. silvaelucens) and three represent new reports of...

Absence of plague in certain mammals from Java and Kalimantan (Borneo).

PubMed

Van Peenen, P F; Joseph, S W; Cavanaugh, D C; Williams, J E; Luyster, L F; Saroso, J S

1976-09-01

Antibodies against plague were lacking in 237 wild mammal sera from Java and 103 from Kalimantan. Wild mammal spleens, 114 from Java and 18 from Kalimantan were negative for plague bacilli. A variety of mammalian species and areas was examined.

Peer Evaluation Can Reliably Measure Local Knowledge

ERIC Educational Resources Information Center

Reyes-García, Victoria; Díaz-Reviriego, Isabel; Duda, Romain; Fernández-Llamazares, Álvaro; Gallois, Sandrine; Guèze, Maximilien; Napitupulu, Lucentezza; Pyhälä, Aili

2016-01-01

We assess the consistency of measures of individual local ecological knowledge obtained through peer evaluation against three standard measures: identification tasks, structured questionnaires, and self-reported skills questionnaires. We collected ethnographic information among the Baka (Congo), the Punan (Borneo), and the Tsimane' (Amazon) to…

Helicobacter pylori Infection Rates in Patients Undergoing Endoscopy in the Interior of Borneo.

PubMed

Chai, Feng Yih; Chong, Hock Chin; Tan, Yew Eng; Heng, Sophia Si Ling; Asilah, Siti Mohd Desa; Ridwan, Hashim

2016-04-01

Very limited data are available on the Helicobacter pylori infection among the population of interior Borneo. We aimed to investigate the H. pylori infection rate among an endoscoped interior Borneo population and to report the differences between the infected and noninfected patients. We retrospectively analyzed the data of the rapid urease test (RUT) records in Endoscopy Unit Hospital Keningau from January 2009 to May 2014. Student's t-test, chi-square test or Fisher's exact test were used accordingly. Multiple logistic regression analysis was used to identify independent risk factors for H. pylori infection. Birth cohort was analyzed against H. pylori infection rate with chi-square test. Overall, there were 215 of 774 (27.8%) positive RUTs. Patients with H. pylori infection were younger (47.66 ± 14.93 vs 50.50 ± 15.02 years, p = .019), more likely to be female (OR = 1.54, 95% CI 1.12-2.13, p = .008) and originated from the Pensiangan district (OR = 1.63, 95% CI 1.01-2.64, p = .047). Chinese patients were less likely infected with H. pylori (OR = 0.36, 95% CI 0.16-0.80, p = .013). Birth cohort was significantly associated with H. pylori infection rate (χ(2) (7) = 14.71, p = .040) with an increasing trend of H. pylori infection rate in patients born later (χ(2) (1) = 5.26, p = .022). The overall H. pylori infection rate in this population was unexpectedly low. Accordingly, it may be a recent arrival in this community. Gender, age, dietary practice, socioeconomic status, and ethnicity were among the factors associated with H. pylori infection. © 2015 John Wiley & Sons Ltd.

Phase Locking between Atmospheric Convectively Coupled Equatorial Kelvin Waves and the Diurnal Cycle of Precipitation over the Maritime Continent

NASA Astrophysics Data System (ADS)

Flatau, M. K.; Baranowski, D. B.; Flatau, P. J.; Matthews, A. J.

2016-12-01

Although the importance of the Maritime Continent to the global atmospheric circulation has been long recognized, many researchers have argued that scale separation prevents local processes, such as the local diurnal cycle of precipitation, from directly influencing global scale phenomena such as the variability of atmospheric circulation associated with the equatorial waves. In our study we show that in fact multiscale interactions, which link processes in local and global scales, may play a crucial role for propagation of the CCKWs, which along with the Madden-Julian Oscillation (MJO) are the main eastward propagating component of intraseasonal variability. In our study, we show that not only do CCKWs bring excess amounts of precipitation to the Maritime Continent, but events which are phase locked with the local diurnal cycle of convection have a precipitation signal up to three times larger than average. That means that CCKWs are a primary candidate for extreme precipitation events over the densely populated areas of Indonesia and Malaysia. The complex terrain created by mixture of oceans and lands within the Maritime Continent is unique: the distance between the two main land masses at the equator (islands of Sumatra and Borneo) is approximately the same as the distance travelled by a CCKW in one day. Therefore a CCKW event that is synchronized with a local diurnal cycle over Sumatra is likely to be synchronized over Borneo as well. We find that CCKWs, which are in phase with the local diurnal cycle of precipitation over Sumatra, Borneo and surrounding seas, have a 40% larger chance to successfully cross the Maritime Continent than other CCKWs. That unique feature is a likely a clear example of a multiscale interaction within the region.

Paleontology to policy: the Quaternary history of Southeast Asian tapirs (Tapiridae) in relation to large mammal species turnover, with a proposal for conservation of Malayan tapir by reintroduction to Borneo.

PubMed

Cranbrook, Earl Of; Piper, Philip J

2013-03-01

The Southeast Asian zoogeographical region is divided into Indochinese, Sundaic and Philippine subregions. Two clades of tapirs, Tapirus spp., have been recognized in Quaternary Southeast Asia. A review of sites at which they occurred shows that representatives of both clades, one of which was the ancestral Malayan tapir Tapirus indicus, co-existed with a diversity of other Pleistocene mammal megafauna. The process of replacement of archaic large mammals was progressive and prolonged through the Quaternary. Zooarcheological investigation has extended knowledge of the former occurrence and distribution of tapirs and other large mammals of the region, with discoveries beyond the outer limits of their previously known ranges. These large mammals were subjected to paleoenvironmental changes as a consequence of the Quaternary cycles of glacial and interglacial periods. Archeological evidence suggests that hunting pressure has intensified the effects of altered environments, leading ultimately to the local disappearance of the Malayan tapir in most of Southeast Asia, including Borneo. The survival of the Malayan tapir through the Quaternary until the present shows that the species is both resilient to environmental change and flexible in its ecological re'uirements and, given proper protection, could continue to inhabit tropical Southeast Asia. To assist the species conservation, reintroduction is proposed from the remaining range of Malayan tapir in the wild, to suitable sites of past occurrence in Borneo, where these ancient survivors of the Quaternary megafauna can be accommodated and safeguarded alongside other forms of land usage. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Orangutans, enamel defects, and developmental health: A comparison of Borneo and Sumatra.

PubMed

Skinner, Mark F; Skinner, Matthew M

2017-08-01

Orangutans (Pongo sp.) show among the highest occurrence of three types of developmental enamel defect. Two are attributed to nutritional factors that reduce bone growth in the infant's face early in development. Their timing and prevalence indicate that Sumatra provides a better habitat than does Borneo. The third type, repetitive linear enamel hypoplasia (rLEH) is very common but its etiology is not understood. Our objective is to draw attention to this enigmatic, episodic stressor in the lives of orangutans. We are concerned that neglect of this possible marker of ill health may be contributing, through inaction, to their alarming decline in numbers. Width and depth of an LEH are considered proxies for duration and intensity of stress. The hypothesis that Bornean orangutans would exhibit relatively wider and deeper LEH was tested on 163 independent episodes of LEH from 9 Sumatran and 26 Bornean orangutans measured with a NanoFocus AG "µsurf Mobile Plus" scanner. Non-normally distributed data (depths) were converted to natural logs. No difference was found in width of LEH among the two island taxa; nor are their differences in width or depth between the sexes. After controlling for significant differences in LEH depths between incisors and canines, defects are, contrary to prediction, significantly deeper in Sumatran than Bornean animals (median = 28, 18 µm, respectively). It is concluded that repetitive LEH records an unknown but significant stressor present in both Sumatra and Borneo, with an average periodicity of 6 months (or multiples thereof) that lasts about 6-8 weeks. It is worse in Sumatra. Given this patterning, shared with apes from a wide range of ecological and temporal sources, rLEH is more likely attributable to disease than to malnutrition. © 2017 Wiley Periodicals, Inc.

The fluorescence properties of aerosol larger than 0.8 μm in an urban and a PBA-dominated location

NASA Astrophysics Data System (ADS)

Gabey, A. M.; Stanley, W. R.; Gallagher, M. W.; Kaye, P. H.

2011-01-01

Dual-wavelength Ultraviolet light-induced fluorescence (UV-LIF) measurements were performed on ambient environmental aerosol in Manchester, UK (urban city centre, winter) and Borneo, Malaysia (remote, tropical), which are taken to represent environments with negligible and significant primary biological aerosol (PBA) influences, respectively. Single-particle fluorescence intensity and optical equivalent diameter were measured with a Wide Issue Bioaerosol Sensor, version 3 (WIBS3) in the diameter range 0.8 μm≤DP≤20 μm for 2-3 weeks and filters were analysed using energy dispersive X-ray (EDX) spectroscopy, which revealed mostly non-PBA dominated particle sizes larger than 1 μm in Manchester. The WIBS3 features three fluorescence channels: Fluorescence excited at 280 nm is recorded at 310-400 nm and 400-600 nm and fluorescence excited at 370 nm is detected at 400-600 nm. In Manchester the primary size mode of fluorescent and non-fluorescent material was at 1.2 μm. In Borneo non-fluorescent material peaked at 1.2 μm and fluorescent at 3-4 μm. The fluorescence intensity at 400-600 nm generally increased with DP at both sites, as did the 310-400 nm intensity in Borneo. In Manchester the 310-400 m fluorescence decreased at DP>4 μm, suggesting this channel offers additional discrimination between fluorescent particle types. Finally, the ratio of fluorescence intensity in two pairs of channels was investigated as a function of particle diameter and this varied significantly between the two environments, demonstrating that the fluorescent aerosol in each can in principle be distinguished using a combination of fluorescence and elastic scattering measurements.

Absence of Plasmodium inui and Plasmodium cynomolgi, but detection of Plasmodium knowlesi and Plasmodium vivax infections in asymptomatic humans in the Betong division of Sarawak, Malaysian Borneo.

PubMed

Siner, Angela; Liew, Sze-Tze; Kadir, Khamisah Abdul; Mohamad, Dayang Shuaisah Awang; Thomas, Felicia Kavita; Zulkarnaen, Mohammad; Singh, Balbir

2017-10-17

Plasmodium knowlesi, a simian malaria parasite, has become the main cause of malaria in Sarawak, Malaysian Borneo. Epidemiological data on malaria for Sarawak has been derived solely from hospitalized patients, and more accurate epidemiological data on malaria is necessary. Therefore, a longitudinal study of communities affected by knowlesi malaria was undertaken. A total of 3002 blood samples on filter paper were collected from 555 inhabitants of 8 longhouses with recently reported knowlesi malaria cases in the Betong Division of Sarawak, Malaysian Borneo. Each longhouse was visited bimonthly for a total of 10 times during a 21-month study period (Jan 2014-Oct 2015). DNA extracted from blood spots were examined by a nested PCR assay for Plasmodium and positive samples were then examined by nested PCR assays for Plasmodium falciparum, Plasmodium vivax, Plasmodium malariae, Plasmodium ovale, Plasmodium knowlesi, Plasmodium cynomolgi and Plasmodium inui. Blood films of samples positive by PCR were also examined by microscopy. Genus-specific PCR assay detected Plasmodium DNA in 9 out of 3002 samples. Species-specific PCR identified 7 P. knowlesi and one P. vivax. Malaria parasites were observed in 5 thick blood films of the PCR positive samples. No parasites were observed in blood films from one knowlesi-, one vivax- and the genus-positive samples. Only one of 7 P. knowlesi-infected individual was febrile and had sought medical treatment at Betong Hospital the day after sampling. The 6 knowlesi-, one vivax- and one Plasmodium-infected individuals were afebrile and did not seek any medical treatment. Asymptomatic human P. knowlesi and P. vivax malaria infections, but not P. cynomolgi and P. inui infections, are occurring within communities affected with malaria.

A new genus of Blacinae (Hymenoptera: Braconidae)

Treesearch

Lester P. Gibson

1977-01-01

A new genus, Canalicephalus, of the subfamily Blacinae is described along with 4 new species, C. orientalis from Borneo, C. novus from New Guinea, and C. bakeri and C. mindanao, both from the Philippines. Keys are included to separate these 2 genera and the 4...

Women Artists: Multicultural Visions.

ERIC Educational Resources Information Center

LaDuke, Betty

This resource gathers together explorations of women's art from Asia, Latin America, Eastern Europe, and the United States as a stimulus for interdisciplinary discussion and investigation. Part 1, "Art, Ecology, and Spirituality", focuses on traditional artists from Borneo, India, and Mexico, whose symbolic images are linked to goddesses…

Aerial Surveys Give New Estimates for Orangutans in Sabah, Malaysia

PubMed Central

Gimenez, Olivier; Ambu, Laurentius; Ancrenaz, Karine; Andau, Patrick; Goossens, Benoît; Payne, John; Sawang, Azri; Tuuga, Augustine; Lackman-Ancrenaz, Isabelle

2005-01-01

Great apes are threatened with extinction, but precise information about the distribution and size of most populations is currently lacking. We conducted orangutan nest counts in the Malaysian state of Sabah (North Borneo), using a combination of ground and helicopter surveys, and provided a way to estimate the current distribution and size of the populations living throughout the entire state. We show that the number of nests detected during aerial surveys is directly related to the estimated true animal density and that a helicopter is an efficient tool to provide robust estimates of orangutan numbers. Our results reveal that with a total estimated population size of about 11,000 individuals, Sabah is one of the main strongholds for orangutans in North Borneo. More than 60% of orangutans living in the state occur outside protected areas, in production forests that have been through several rounds of logging extraction and are still exploited for timber. The role of exploited forests clearly merits further investigation for orangutan conservation in Sabah. PMID:15630475

Eddy Covariance Measurements of Methane Flux at a Tropical Peat Forest in Sarawak, Malaysian Borneo

NASA Astrophysics Data System (ADS)

Tang, Angela C. I.; Stoy, Paul C.; Hirata, Ryuichi; Musin, Kevin K.; Aeries, Edward B.; Wenceslaus, Joseph; Melling, Lulie

2018-05-01

Tropical biogenic sources are a likely cause of the recent increase in global atmospheric methane concentration. To improve our understanding of tropical methane sources, we used the eddy covariance technique to measure CH4 flux (FCH4) between a tropical peat forest ecosystem and the atmosphere in Malaysian Borneo over a 2-month period during the wet season. Mean daily FCH4 during the measurement period, on the order of 0.024 g C-CH4·m-2·day-1, was similar to eddy covariance FCH4 measurements from tropical rice agroecosystems and boreal fen ecosystems. A linear modeling analysis demonstrated that air temperature (Tair) was critical for modeling FCH4 before the water table breached the surface and that water table alone explained some 20% of observed FCH4 variability once standing water emerged. Future research should measure FCH4 on an annual basis from multiple tropical ecosystems to better constrain tropical biogenic methane sources.

Three Taxa in One: Cryptic Diversity in the Black Fly Simulium nobile (Diptera: Simuliidae) in Southeast Asia.

PubMed

Low, Van Lun; Takaoka, Hiroyuki; Pramual, Pairot; Adler, Peter H; Ya'cob, Zubaidah; Chen, Chee Dhang; Yotopranoto, Subagyo; Zaid, Adnan; Hadi, Upik Kesumawati; Lardizabal, Maria Lourdes; Nasruddin-Roshidi, Affan; Sofian-Azirun, Mohd

2016-07-01

We access the molecular diversity of the black fly Simulium nobile De Mejiere, using the universal cytochrome c oxidase subunit I (COI) barcoding gene, across its distributional range in Southeast Asia. Our phylogenetic analyses recovered three well-supported mitochondrial lineages of S. nobile, suggesting the presence of cryptic species. Lineage A is composed of a population from Sabah, East Malaysia (Borneo); lineage B represents the type population from Java, Indonesia; and lineage C includes populations from the mainland of Southeast Asia (Peninsular Malaysia and Thailand). The genetic variation of lineage C on the mainland is greater than that of lineages A and B on the islands of Borneo and Java. Our study highlights the value of a molecular approach in assessing species status of simuliids in geographically distinct regions. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Susceptibility of human Plasmodium knowlesi infections to anti-malarials

PubMed Central

2013-01-01

Background Evidence suggests that Plasmodium knowlesi malaria in Sarawak, Malaysian Borneo remains zoonotic, meaning anti-malarial drug resistance is unlikely to have developed in the absence of drug selection pressure. Therefore, adequate response to available anti-malarial treatments is assumed. Methods Here the ex vivo sensitivity of human P. knowlesi isolates in Malaysian Borneo were studied, using a WHO schizont maturation assay modified to accommodate the quotidian life cycle of this parasite. The in vitro sensitivities of P. knowlesi H strain adapted from a primate infection to in vitro culture (by measuring the production of Plasmodium lactate dehydrogenase) were also examined together with some assays using Plasmodium falciparum and Plasmodium vivax. Results Plasmodium knowlesi is uniformly highly sensitive to artemisinins, variably and moderately sensitive to chloroquine, and less sensitive to mefloquine. Conclusions Taken together with reports of clinical failures when P. knowlesi is treated with mefloquine, the data suggest that caution is required if using mefloquine in prevention or treatment of P. knowlesi infections, until further studies are undertaken. PMID:24245918

The domestic cat as a host for Brugian filariasis in South Kalimantan (Borneo), Indonesia.

PubMed

Palmieri, J R; Masbar, S; Purnomo; Marwoto, H A; Tirtokusumo, S; Darwis, F

1985-09-01

Three hundred and twenty-five domestic cats (Felis catus) from six villages of the Hulu Sungai Tengah and Banjar Regency of South Kalimantan (Borneo), Indonesia, were examined for filarial nematodes. Parasites were found in 66 cats, of which 61 (92.4%) had Brugia pahangi, four (6.1%) has B. malayi and one (1.5%) had Dirofilaria repens. Infection rates ranged from 11% to 22% in cats from secondary forest/rice-field habitats, from 15% to 30% in open village/rice-field habitats, to 50% in an open coastal village. In all cases the infection rate of B. malayi in man was greater than in cats from the same collecting area. The number of B. pahangi microfilariae per 20 microliter cat blood ranged from 34 at 1000 hours to 571 at 2200 hours. The results of this study suggest that in this region of Indonesia the domestic cat is not an important host for maintaining B. malayi.

Unrealized diversity in an urban rainforest: A new species of Lygosoma (Squamata: Scincidae) from western Sarawak, Malaysia (Borneo).

PubMed

Karin, Benjamin R; Freitas, Elyse S; Shonleben, Samuel; Grismer, L Lee; Bauer, Aaron M; Das, Indraneil

2018-01-12

We collected two specimens of an undescribed species of Lygosoma from pitfall traps in an urban rainforest in Kuching and from the base of a forested hill in western Sarawak, East Malaysia. The new species is diagnosable from all south-east Asian congeners by morphological characters, and most closely resembles Lygosoma herberti from the Thai-Malay Peninsula. The new species shows substantial molecular divergence from its closest relatives in two protein-coding genes, one mitochondrial (ND1) and one nuclear (R35) that we sequenced for several south-east Asian congeners. We describe the new species on the basis of this distinct morphology and genetic divergence. It is the third species of Lygosoma known from Borneo, and highlights the continuing rise in lizard species diversity on the island. In addition, the discovery of this species from a small urban rainforest underscores the importance of preserving intact rainforest areas of any size in maintaining species diversity.

Drepanosticta adenani sp. nov., from the Lanjak Entimau Wildlife Sanctuary in Sarawak (Odonata: Zygoptera: Platystictidae).

PubMed

Dow, Rory A; Reels, Graham T

2018-02-15

Drepanosticta adenani sp. nov. (holotype ♂, from a tributary of Sungai Jela, Nanga Segerak area, Lanjak Entimau Wildlife Sanctuary, Sri Aman Division, Sarawak, Malaysian Borneo, 18 vii 2016, deposited in the Natural History Museum, London) is described from both sexes.

Development and carbon sequestration of tropical peat domes in south-east Asia: links to post-glacial sea-level changes and Holocene climate variability

NASA Astrophysics Data System (ADS)

Dommain, René; Couwenberg, John; Joosten, Hans

2011-04-01

Tropical peatlands of SE-Asia represent a significant terrestrial carbon reservoir of an estimated 65 Gt C. In this paper we present a comprehensive data synthesis of radiocarbon dated peat profiles and 31 basal dates of ombrogenous peat domes from the lowlands of Peninsular Malaysia, Sumatra and Borneo and integrate our peatland data with records of past sea-level and climate change in the region. Based on their developmental features three peat dome regions were distinguished: inland Central Kalimantan (Borneo), Kutai basin (Borneo) and coastal areas across the entire region. With the onset of the Holocene the first peat domes developed in Central Kalimantan as a response to rapid post-glacial sea-level rise over the Sunda Shelf and intensification of the Asian monsoon. Peat accumulation rates in Central Kalimantan strongly declined after 8500 cal BP in close relation to the lowering rate of the sea-level rise and possibly influenced by the regional impact of the 8.2 ka event. Peat growth in Central Kalimantan apparently ceased during the Late Holocene in association with amplified El Niño activity as exemplified by several truncated peat profiles. Peat domes from the Kutai basin are all younger than ˜8300 cal BP. Peat formation and rates of peat accumulation were driven by accretion rates of the Mahakam River and seemingly independent of climate. Most coastal peat domes, the largest expanse of SE-Asian peatlands, initiated between 7000 and 4000 cal BP as a consequence of a Holocene maximum in regional rainfall and the stabilisation and subsequent regression of the sea-level. These boundary conditions induced the highest rates of peat accumulation of coastal peat domes. The Late Holocene sea-level regression led to extensive new land availability that allowed for continued coastal peat dome formation until the present. The time weighted mean Holocene peat accumulation rate is 0.54 mm yr -1 for Central Kalimantan, 1.89 mm yr -1 for Kutai and 1.77 mm yr -1 for coastal domes of Sumatra and Borneo. The mean Holocene carbon sequestration rates amount to 31.3 g C m -2 yr -1 for Central Kalimantan and 77.0 g C m -2 yr -1 for coastal sites, which makes coastal peat domes of south-east Asia the spatially most efficient terrestrial ecosystem in terms of long term carbon sequestration.

Seven new Yorkeria species (Cestoda: Tetraphyllidea) from Borneo and Australia and their implications for identification of Chiloscyllium (Elasmobranchii: Orectolobiformes) species.

PubMed

Caira, J N; Jensen, K; Rajan, Chandrika

2007-04-01

New material of Yorkeria Southwell, 1927, collected from Chiloscyllium Müller & Henle species, i.e., bamboo sharks, from Malaysian Borneo and eastern Australia was found to include specimens that appear to be consistent with, and thus allow redescription of, the poorly characterized type of the genus, Yorkeria parva Southwell, 1927, as well as 7 new species of tetraphyllidean cestodes from the genus Yorkeria. Discovered in Borneo were Y. parva and Yorkeria teeveeyi n. sp. from Chiloscyllium indicum (Gmelin), Yorkeria garneri n. sp. from Chiloscyllium hasselti Bleeker, Yorkeria pusillulus n. sp., Yorkeria saliputium n. sp., and Yorkeria yubodohensis n. sp. from Chiloscyllium punctatum Miller & Henle. In Australia, a shark species tentatively identified as Chiloscyllium cf. punctatum was found to host Yorkeria izardi n. sp. and Yorkeria longstaffae n. sp. Three of the new species resemble Yorkeria kelleyae Caira & Tracy, 2002, described from sharks identified as C. punctatum in Thailand, in their possession of medial and lateral hooks that are approximately equal in length. All 3 can be distinguished from Y. kelleyae, however, in their possession of vitelline follicles that are not interrupted at the level of the ovary; they differ from one another in that 1 is hyperapolytic (Y. saliputium n. sp.), and the other 2 possess round (Y. pusillulus n. sp.) versus tapered (Y. longstaffae n. sp.) bothridia. Among species with medial and lateral hooks that are conspicuously unequal in length, only Y. izardi n. sp. possesses bothridia that taper posteriorly and almost completely overlap the cephalic peduncle, stopping just short of its posterior margin. Yorkeria garneri n. sp. is distinctive in its possession of mature proglottids that are only slightly longer than wide, rather than distinctly longer than wide. Particularly notable is Y. teeveeyi n. sp., which bears a stobila on which 2-3 of the subterminal proglottids are consistently more mature than the terminal proglottid. Yorkeria yubodohensis n. sp. most closely resembles Y. parva, differing in the pattern of microtriches seen on its scolex, and also in its possession of relatively fewer proglottids. This brings the total number of Yorkeria species described worldwide to 12. The host associations of these cestodes raise questions about the conspecificity of bamboo shark specimens identified as C. punctatum in Thailand, Borneo, and Australia, since individuals in each of these 3 regions appear to host distinctive, nonoverlapping Yorkeria faunas. A key to the 12 known species of Yorkeria is provided.

Soldiers from the Hills: The Gurkhas.

DTIC Science & Technology

1988-03-23

for the coronation of Queen Elizabeth II and afterward a representative party of the regiment took the Truncheon to Buckingham Palace for the Queen’s...creating an independent state e in Northern Borneo, attacked the Sultan’s palace , the prime minister’s house, the police station, and other important places

A Multicultural Social Studies Series. Book 2. Asia.

ERIC Educational Resources Information Center

Kwok, Irene; Sung, Robert

This text is designed for students continuing in the Chinese Bilingual Pilot Program, ESEA Title VII, at the seventh grade level. The text introduces different cultural aspects and general knowledge of Asia, and is divided into twenty-five lessons, having the following headings: Glimpses of Asia; Monsoon; Malaysia; Borneo; Asian Countries; Caste…

The Influence of AQ on the Academic Achievement among Malaysian Polytechnic Students

ERIC Educational Resources Information Center

Matore, Mohd Effendi Ewan Mohd; Khairani, Ahmad Zamri; Razak, Nordin Abd

2015-01-01

This study aimed to examine the influence of Adversity Quotient (AQ) on the academic achievement among Malaysian polytechnic students. A total of 1,845 students from five polytechnics in Malaysia participated in this study and these polytechnic was selected from five different zones, namely Nouthern, Southern, Eastern, Western and Borneo. The…

Assessment Profile of Malaysia: High-Stakes External Examinations Dominate

ERIC Educational Resources Information Center

Ong, Saw Lan

2010-01-01

Malaysia is a federation of 13 states located in South-east Asia. The country consists of two geographical regions; Peninsular Malaysia (also known as West Malaysia) and Malaysian Borneo (also known as East Malaysia) separated by the South China Sea. The educational administration in Malaysia is highly centralised with four hierarchical levels;…

Siphonoecetini Just, 1983 (Crustacea, Amphipoda, Ischyroceridae) 11: Cephaloecetes schioettei sp. nov. from The Philippines.

PubMed

Just, Jean

2017-05-29

The new species described below, Cephaloecetes schioettei, is the second siphonoecetine to be recorded from the archipelago region of Indonesia, The Philippines and Papua New Guinea. The previous reports were of Borneoecetes wongi Barnard & Thomas, 1984 from Borneo and from Papua New Guinea by Myers (1995).

English Language Teaching in Brunei: A View through a Critical Lens

ERIC Educational Resources Information Center

Barry, Clayton

2011-01-01

The small sultanate of Brunei, located on the island of Borneo in the South China Sea, introduced bilingual education shortly after independence. As a consequence, Brunei's Ministry of Education outsourced much of its English language teaching requirements to qualified expatriate teachers. Despite over 25 years of systemic English language…

Physico-chemical evaluation of the “Casturi” Mango

USDA-ARS?s Scientific Manuscript database

Mangifera casturi “Casturi” mango is a tropical fruit tree about 10–30 m tall which is endemic to very small area around Banjarmasin in Southern Borneo (Indonesia). The casturi mango is believed to be first introduced to Florida by Richard Campbell in early 2000 as part of the germplasm conservat...

Child Care Services in Malaysia

ERIC Educational Resources Information Center

Pheng, Liew Sau

2007-01-01

Malaysia is a multi-ethnic, multi-racial, and multi-religious country with a population of more than 25 million people who live in the Peninsular and the States of Sabah and Sarawak on Borneo Island. It is a harmonious and peaceful nation comprised of Malays, who are the ethnic majority, followed by Chinese, Indians, Ibans, Kadazandusuns, and…

Psychological Characteristics and Entrepreneurial Intention: A Study among University Students in North Borneo, Malaysia

ERIC Educational Resources Information Center

Nasip, Sorayah; Amirul, Sharifah Rahama; Sondoh, Stephen Laison, Jr.; Tanakinjal, Geoffrey Harvey

2017-01-01

Purpose: The purpose of this paper is to investigate the relationship between individual psychological characteristics (i.e. innovativeness, locus of control, self-confidence, propensity to take risk, need for achievement and tolerance for ambiguity) and entrepreneurial intention. Design/methodology/approach: A total of 676 undergraduate students…

Stream ecosystem integrity is impaired by logging and shifting agriculture in a global megadiversity center (Sarawak, Borneo).

PubMed

Jinggut, Tajang; Yule, Catherine M; Boyero, Luz

2012-10-15

In common with most of Borneo, the Bakun region of Sarawak is currently subject to heavy deforestation mainly due to logging and, to a lesser extent, traditional slash-and-burn farming practices. This has the potential to affect stream ecosystems, which are integrators of environmental change in the surrounding terrestrial landscape. This study evaluated the effects of both types of deforestation by using functional and structural indicators (leaf litter decomposition rates and associated detritivores or 'shredders', respectively) to compare a fundamental ecosystem process, leaf litter decomposition, within logged, farmed and pristine streams. Slash-and-burn agricultural practices increased the overall rate of decomposition despite a decrease in shredder species richness (but not shredder abundance) due to increased microbial decomposition. In contrast, decomposition by microbes and invertebrates was slowed down in the logged streams, where shredders were less abundant and less species rich. This study suggests that shredder communities are less affected by traditional agricultural farming practices, while modern mechanized deforestation has an adverse effect on both shredder communities and leaf breakdown. Copyright © 2012 Elsevier B.V. All rights reserved.

Baseline coral disease surveys within three marine parks in Sabah, Borneo.

PubMed

Miller, Jennifer; Sweet, Michael J; Wood, Elizabeth; Bythell, John

2015-01-01

Two of the most significant threats to coral reefs worldwide are bleaching and disease. However, there has been a scarcity of research on coral disease in South-East Asia, despite the high biodiversity and the strong dependence of local communities on the reefs in the region. This study provides baseline data on coral disease frequencies within three national parks in Sabah, Borneo, which exhibit different levels of human impacts and management histories. High mean coral cover (55%) and variable disease frequency (mean 0.25 diseased colonies m(-2)) were found across the three sites. Highest disease frequency (0.44 diseased colonies per m(2)) was seen at the site closest to coastal population centres. Bleaching and pigmentation responses were actually higher at Sipadan, the more remote, offshore site, whereas none of the other coral diseases detected in the other two parks were detected in Sipadan. Results of this study offer a baseline dataset of disease in these parks and indicate the need for continued monitoring, and suggest that coral colonies in parks under higher anthropogenic stressors and with lower coral cover may be more susceptible to contracting disease.

Transport and scavenging of biomass burning aerosols in the maritime continent

NASA Astrophysics Data System (ADS)

Lee, H. H.; Wang, C.

2014-12-01

Biomass burning frequently occurs in summertime over the maritime continent, especially in Malaysia peninsula, Sumatra, and Borneo. Under certain weather conditions, particulate matters emitted from such fires cause degrade of air quality and thus occurrence of often weekly long haze in downwind locations such as Singapore. It is possible that these biomass burning aerosols may have influenced convective clouds in the maritime continent though such cases have not been well simulated and understood. In order to improve understanding of the spatiotemporal coverage and influence of biomass burning aerosols in the maritime continent, we have used the Weather Research and Forecasting (WRF) model to study the transport of biomass burning aerosols from Malaysia peninsula, Sumatra, and Borneo, using biomass burning emissions from the Fire INventory from NCAR (FINN) version 1.0. We choose to use emissions from the month of August because the annual emissions peak often occurs within this month. Based on a multi-year ensemble simulation, we have examined the influences of various meteorological regimes on the aerosol transport and wet removal.

Interconnection economics of small power systems -- A case study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bloethe, W.G.; Thakar, H.C.; Kim, L.C.

1996-11-01

The advantages of interconnecting large electric power systems has been almost universally accepted in those parts of North America that are not geographically isolated. However, interconnecting power systems can result in significant economic advantages, even in those parts of the world where power systems are small and widely separated. This paper examines two small, isolated power systems on the island of Borneo in Southeast Asia. The Malaysian State of Srawak lies on the north coast of Borneo. With an area of 123,156 square km (47,555 square mi.) and population of 1.7 million, it is the largest, but most sparsely populated,more » state in the Federation of Malaysia. Its neighbor to the south is the Indonesian Province of West Kalimantan. A study examining the feasibility of interconnecting these two power systems was undertaken in 1994 as a part of the Association of Southeast Asian Nations (ASEAN) initiative to interconnect the power systems in the region. The ASEAN region is characterized by rapidly growing economies and rapid load growth.« less

Description of the tadpoles of three rare species of megophryid frogs (Amphibia: Anura: Megophryidae) from Gunung Mulu, Sarawak, Malaysia.

PubMed

Oberhummer, Evelyne; Barten, Catherin; Schweizer, Manuel; Das, Indraneil; Haas, Alexander; Hertwig, Stefan T

2014-07-09

The megophryid frogs Leptobrachella brevicrus, Leptolalax dringi and Megophrys dringi are species exclusively known  from highly localised areas in isolated mountain ranges on Borneo. The tadpoles and adults in this study were collected at the shared type locality for the three species in Gunung Mulu National Park, Sarawak, Malaysia (Borneo). The species identities of larvae were determined via comparison to syntopic adults using DNA barcoding techniques based on partial 16S rRNA mitochondrial gene sequences. The genetic data supported the status of the three taxa as valid species. Descriptions of colouration in life and after preservation, external morphological features, morphometric measurements and ecological notes in comparison to congeneric species are supplied. The tadpoles of L. brevicrus and L. dringi show similar adaptations to a fossorial lifestyle. These include an elongated, vermiform body, a relatively long tail and small eyes. Both were found in the gravel beds of a small mountain stream. In contrast, the larvae of M. dringi are adapted to occupying and feeding at the surface of pools within the stream. 

Fecal parasite risk in the endangered proboscis monkey is higher in an anthropogenically managed forest environment compared to a riparian rain forest in Sabah, Borneo

PubMed Central

Klaus, Annette; Strube, Christina; Röper, Kathrin Monika; Radespiel, Ute; Schaarschmidt, Frank; Nathan, Senthilvel; Goossens, Benoit

2018-01-01

Understanding determinants shaping infection risk of endangered wildlife is a major topic in conservation medicine. The proboscis monkey, Nasalis larvatus, an endemic primate flagship species for conservation in Borneo, is endangered through habitat loss, but can still be found in riparian lowland and mangrove forests, and in some protected areas. To assess socioecological and anthropogenic influence on intestinal helminth infections in N. larvatus, 724 fecal samples of harem and bachelor groups, varying in size and the number of juveniles, were collected between June and October 2012 from two study sites in Malaysian Borneo: 634 samples were obtained from groups inhabiting the Lower Kinabatangan Wildlife Sanctuary (LKWS), 90 samples were collected from groups of the Labuk Bay Proboscis Monkey Sanctuary (LBPMS), where monkeys are fed on stationary feeding platforms. Parasite risk was quantified by intestinal helminth prevalence, host parasite species richness (PSR), and eggs per gram feces (epg). Generalized linear mixed effect models were applied to explore whether study site, group type, group size, the number of juveniles per group, and sampling month predict parasite risk. At the LBPMS, prevalence and epg of Trichuris spp., strongylids, and Strongyloides spp. but not Ascaris spp., as well as host PSR were significantly elevated. Only for Strongyloides spp., prevalence showed significant changes between months; at both sites, the beginning rainy season with increased precipitation was linked to higher prevalence, suggesting the external life cycle of Strongyloides spp. to benefit from humidity. Higher prevalence, epgs, and PSR within the LBPMS suggest that anthropogenic factors shape host infection risk more than socioecological factors, most likely via higher re-infection rates and chronic stress. Noninvasive measurement of fecal parasite stages is an important tool for assessing transmission dynamics and infection risks for endangered tropical wildlife. Findings will contribute to healthcare management in nature and in anthropogenically managed environments. PMID:29630671

Assessment of atmospheric impacts of biomass open burning in Kalimantan, Borneo during 2004

NASA Astrophysics Data System (ADS)

Mahmud, Mastura

2013-10-01

Biomass burning from the combustion of agricultural wastes and forest materials is one of the major sources of air pollution. The objective of the study is to investigate the major contribution of the biomass open burning events in the island of Borneo, Indonesia to the degradation of air quality in equatorial Southeast Asia. A total of 10173 active fire counts were detected by the MODIS Aqua satellite during August 2004, and consequently, elevated the PM10 concentration levels at six air quality stations in the state of Sarawak, in east Malaysia, which is located in northwestern Borneo. The PM10 concentrations measured on a daily basis were above the 50 μg m-3 criteria as stipulated by the World Health Organization Air Quality Guidelines for most of the month, and exceeded the 24-h Recommended Malaysian Air Quality Guidelines of 150 μg m-3 on three separate periods from the 13th to the 30th August 2004. The average correlation between the ground level PM10 concentrations and the satellite derived aerosol optical depth (AOD) of 0.3 at several ground level air quality stations, implied the moderate relationship between the aerosols over the depth of the entire column of atmosphere and the ground level suspended particulate matter. Multiple regression for meteorological parameters such as rainfall, windspeed, visibility, mean temperature, relative humidity at two stations in Sarawak and active fire counts that were located near the centre of fire activities were only able to explain for 61% of the total variation in the AOD. The trajectory analysis of the low level mesoscale meteorological conditions simulated by the TAPM model illustrated the influence of the sea and land breezes within the lowest part of the planetary boundary layer, embedded within the prevailing monsoonal southwesterlies, in circulating the aged and new air particles within Sarawak.

Origin of placer laurite from Borneo: Se and As contents, and S isotopic compositions

USGS Publications Warehouse

Hattori, K.H.; Cabri, L.J.; Johanson, B.; Zientek, M.L.

2004-01-01

We examined grains of the platinum-group mineral, laurite (RuS2), from the type locality, Pontyn River, Tanah Laut, Borneo, and from the Tambanio River, southeast Borneo. The grains show a variety of morphologies, including euhedral grains with conchoidal fractures and pits, and spherical grains with no crystal faces, probably because of abrasion. Inclusions are rare, but one grain contains Ca-Al amphilbole inclusions, and another contains an inclusion of chalcopyrite+bornite+pentlandite+heazlewoodite (Ni3S2) that is considered to have formed by a two-stage process of exsolution and crystallization from a once homogeneous Fe-Cu-Ni sulphide melt. All grains examined are solid solutions of Ru and Os with Ir (2.71-11.76 wt.%) and Pd (0.31-0.66 wt%). Their compositions are similar to laurite from ophiolitic rocks. The compositions show broad negative correlations between Os and Ir, between As and Ir, and between As (0.4-0.74 wt.%) and Se (140 to 240 ppm). Laurite with higher Os contains more Se and less Ir and As. The negative correlations between Se and As may be attributed to their occupancy of the S site, but the compositional variations of Os. Ir and As probably reflect the compositional variation of rocks where the crystals grew. Ratios of S/Se in laurite show a narrow spread from 1380 to 2300, which are similar to ratios for sulphides from the refractory sub-are mantle. Sulphur isotopic compositions of laurite are independent of chemical compositions and morphologies and are similar to the chondritic value of 0???. The data suggest that S in laurite has not undergone redox changes and originated from the refractory mantle. The data support the formation of laurite in the residual mantle or in a magnia generated from such a refractory mantle, followed by erosion after the obduction of the host ultramafic rocks. ?? 2004 The Mineralogical Society.

Fecal parasite risk in the endangered proboscis monkey is higher in an anthropogenically managed forest environment compared to a riparian rain forest in Sabah, Borneo.

PubMed

Klaus, Annette; Strube, Christina; Röper, Kathrin Monika; Radespiel, Ute; Schaarschmidt, Frank; Nathan, Senthilvel; Goossens, Benoit; Zimmermann, Elke

2018-01-01

Understanding determinants shaping infection risk of endangered wildlife is a major topic in conservation medicine. The proboscis monkey, Nasalis larvatus, an endemic primate flagship species for conservation in Borneo, is endangered through habitat loss, but can still be found in riparian lowland and mangrove forests, and in some protected areas. To assess socioecological and anthropogenic influence on intestinal helminth infections in N. larvatus, 724 fecal samples of harem and bachelor groups, varying in size and the number of juveniles, were collected between June and October 2012 from two study sites in Malaysian Borneo: 634 samples were obtained from groups inhabiting the Lower Kinabatangan Wildlife Sanctuary (LKWS), 90 samples were collected from groups of the Labuk Bay Proboscis Monkey Sanctuary (LBPMS), where monkeys are fed on stationary feeding platforms. Parasite risk was quantified by intestinal helminth prevalence, host parasite species richness (PSR), and eggs per gram feces (epg). Generalized linear mixed effect models were applied to explore whether study site, group type, group size, the number of juveniles per group, and sampling month predict parasite risk. At the LBPMS, prevalence and epg of Trichuris spp., strongylids, and Strongyloides spp. but not Ascaris spp., as well as host PSR were significantly elevated. Only for Strongyloides spp., prevalence showed significant changes between months; at both sites, the beginning rainy season with increased precipitation was linked to higher prevalence, suggesting the external life cycle of Strongyloides spp. to benefit from humidity. Higher prevalence, epgs, and PSR within the LBPMS suggest that anthropogenic factors shape host infection risk more than socioecological factors, most likely via higher re-infection rates and chronic stress. Noninvasive measurement of fecal parasite stages is an important tool for assessing transmission dynamics and infection risks for endangered tropical wildlife. Findings will contribute to healthcare management in nature and in anthropogenically managed environments.

Assessing the Status of Wild Felids in a Highly-Disturbed Commercial Forest Reserve in Borneo and the Implications for Camera Trap Survey Design

PubMed Central

Wearn, Oliver R.; Rowcliffe, J. Marcus; Carbone, Chris; Bernard, Henry; Ewers, Robert M.

2013-01-01

The proliferation of camera-trapping studies has led to a spate of extensions in the known distributions of many wild cat species, not least in Borneo. However, we still do not have a clear picture of the spatial patterns of felid abundance in Southeast Asia, particularly with respect to the large areas of highly-disturbed habitat. An important obstacle to increasing the usefulness of camera trap data is the widespread practice of setting cameras at non-random locations. Non-random deployment interacts with non-random space-use by animals, causing biases in our inferences about relative abundance from detection frequencies alone. This may be a particular problem if surveys do not adequately sample the full range of habitat features present in a study region. Using camera-trapping records and incidental sightings from the Kalabakan Forest Reserve, Sabah, Malaysian Borneo, we aimed to assess the relative abundance of felid species in highly-disturbed forest, as well as investigate felid space-use and the potential for biases resulting from non-random sampling. Although the area has been intensively logged over three decades, it was found to still retain the full complement of Bornean felids, including the bay cat Pardofelis badia, a poorly known Bornean endemic. Camera-trapping using strictly random locations detected four of the five Bornean felid species and revealed inter- and intra-specific differences in space-use. We compare our results with an extensive dataset of >1,200 felid records from previous camera-trapping studies and show that the relative abundance of the bay cat, in particular, may have previously been underestimated due to the use of non-random survey locations. Further surveys for this species using random locations will be crucial in determining its conservation status. We advocate the more wide-spread use of random survey locations in future camera-trapping surveys in order to increase the robustness and generality of inferences that can be made. PMID:24223717

High diversity of Pseudo-nitzschia along the northern coast of Sarawak (Malaysian Borneo), with descriptions of P. bipertita sp. nov. and P. limii sp. nov. (Bacillariophyceae).

PubMed

Teng, Sing Tung; Tan, Suh Nih; Lim, Hong Chang; Dao, Viet Ha; Bates, Stephen S; Leaw, Chui Pin

2016-12-01

Forty-eight isolates of Pseudo-nitzschia species were established from the Miri coast of Sarawak (Malaysian Borneo) and underwent TEM observation and molecular characterization. Ten species were found: P. abrensis, P. batesiana, P. fukuyoi, P. kodamae, P. lundholmiae, P. multistriata, P. pungens, P. subfraudulenta, as well as two additional new morphotypes, herein designated as P. bipertita sp. nov. and P. limii sp. nov. This is the first report of P. abrensis, P. batesiana, P. kodamae, P. fukuyoi, and P. lundholmiae in coastal waters of Malaysian Borneo. Pseudo-nitzschia bipertita differs from its congeners by the number of sectors that divide the poroids, densities of band striae, and its cingular band structure. Pseudo-nitzschia limii, a pseudo-cryptic species in the P. pseudodelicatissima complex sensu lato, is distinct by having wider proximal and distal mantles, a higher number of striae, and greater poroid height in the striae of the valvocopula. The species were further supported by the phylogenetic reconstructions of the nuclear-encoded large subunit ribosomal gene and the second internal transcribed spacer. Phylogenetically, P. bipertita clustered with its sister taxa (P. subpacifica + P. heimii); P. limii appears as a sister taxon to P. kodamae and P. hasleana in the ITS2 tree. Pairwise comparison of ITS2 transcripts with its closest relatives revealed the presence of both hemi- and compensatory base changes. Toxicity analysis showed detectable levels of domoic acid in P. abrensis, P. batesiana, P. lundholmiae, and P. subfraudulenta, but both new species tested below the detection limit. © 2016 Phycological Society of America.

Bionomics of Anopheles latens in Kapit, Sarawak, Malaysian Borneo in relation to the transmission of zoonotic simian malaria parasite Plasmodium knowlesi

PubMed Central

Tan, Cheong H; Vythilingam, Indra; Matusop, Asmad; Chan, Seng T; Singh, Balbir

2008-01-01

Background A large focus of human infections with Plasmodium knowlesi, a simian parasite naturally found in long-tailed and pig-tailed macaques was discovered in the Kapit Division of Sarawak, Malaysian Borneo. A study was initiated to identify the vectors of malaria, to elucidate where transmission is taking place and to understand the bionomics of the vectors in Kapit. Methods Three different ecological sites in the forest, farm and longhouse in the Kapit district were selected for the study. Mosquitoes were collected by human landing collection at all sites and at the forest also by monkey-baited-traps situated on three different levels. All mosquitoes were identified and salivary glands and midguts of anopheline mosquitoes were dissected to determine the presence of malaria parasites. Results and Discussions Over an 11-month period, a total of 2,504 Anopheles mosquitoes comprising 12 species were caught; 1,035 at the farm, 774 at the forest and 425 at the longhouse. Anopheles latens (62.3%) and Anopheles watsonii (30.6%) were the predominant species caught in the forested ecotypes, while in the farm Anopheles donaldi (49.9%) and An. latens (35.6%) predominated. In the long house, An. latens (29.6%) and An. donaldi (22.8%) were the major Anopheline species. However, An. latens was the only mosquito positive for sporozoites and it was found to be attracted to both human and monkey hosts. In monkey-baited net traps, it preferred to bite monkeys at the canopy level than at ground level. An. latens was found biting early as 18.00 hours. Conclusion Anopheles latens is the main vector for P. knowlesi malaria parasites in the Kapit District of Sarawak, Malaysian Borneo. The study underscores the relationship between ecology, abundance and bionomics of anopheline fauna. The simio-anthropophagic and acrodendrophilic behaviour of An. latens makes it an efficient vector for the transmission of P. knowlesi parasites to both human and monkey hosts. PMID:18377652

Integration of carbon conservation into sustainable forest management using high resolution satellite imagery: A case study in Sabah, Malaysian Borneo

NASA Astrophysics Data System (ADS)

Langner, Andreas; Samejima, Hiromitsu; Ong, Robert C.; Titin, Jupiri; Kitayama, Kanehiro

2012-08-01

Conservation of tropical forests is of outstanding importance for mitigation of climate change effects and preserving biodiversity. In Borneo most of the forests are classified as permanent forest estates and are selectively logged using conventional logging techniques causing high damage to the forest ecosystems. Incorporation of sustainable forest management into climate change mitigation measures such as Reducing Emissions from Deforestation and Forest Degradation (REDD+) can help to avert further forest degradation by synergizing sustainable timber production with the conservation of biodiversity. In order to evaluate the efficiency of such initiatives, monitoring methods for forest degradation and above-ground biomass in tropical forests are urgently needed. In this study we developed an index using Landsat satellite data to describe the crown cover condition of lowland mixed dipterocarp forests. We showed that this index combined with field data can be used to estimate above-ground biomass using a regression model in two permanent forest estates in Sabah, Malaysian Borneo. Tangkulap represented a conventionally logged forest estate while Deramakot has been managed in accordance with sustainable forestry principles. The results revealed that conventional logging techniques used in Tangkulap during 1991 and 2000 decreased the above-ground biomass by an annual amount of average -6.0 t C/ha (-5.2 to -7.0 t C/ha, 95% confidential interval) whereas the biomass in Deramakot increased by 6.1 t C/ha per year (5.3-7.2 t C/ha, 95% confidential interval) between 2000 and 2007 while under sustainable forest management. This indicates that sustainable forest management with reduced-impact logging helps to protect above-ground biomass. In absolute terms, a conservative amount of 10.5 t C/ha per year, as documented using the methodology developed in this study, can be attributed to the different management systems, which will be of interest when implementing REDD+ that rewards the enhancement of carbon stocks.

Investment in seed physical defence is associated with species' light requirement for regeneration and seed persistence: evidence from Macaranga species in Borneo

USDA-ARS?s Scientific Manuscript database

The life stage from seed dispersal to seedling emergence is often critical in determining the regeneration success of plants. During this period seeds must survive an array of seed predators and pathogens and germinate under conditions favorable for seedling establishment. To maximise recruitment s...

Reliability of Automated Biochemical Identification of Burkholderia pseudomallei Is Regionally Dependent

PubMed Central

Podin, Yuwana; Kaestli, Mirjam; McMahon, Nicole; Hennessy, Jann; Ngian, Hie Ung; Wong, Jin Shyan; Mohana, Anand; Wong, See Chang; William, Timothy; Mayo, Mark; Baird, Robert W.

2013-01-01

Misidentifications of Burkholderia pseudomallei as Burkholderia cepacia by Vitek 2 have occurred. Multidimensional scaling ordination of biochemical profiles of 217 Malaysian and Australian B. pseudomallei isolates found clustering of misidentified B. pseudomallei isolates from Malaysian Borneo. Specificity of B. pseudomallei identification in Vitek 2 and potentially other automated identification systems is regionally dependent. PMID:23784129

Reliability of automated biochemical identification of Burkholderia pseudomallei is regionally dependent.

PubMed

Podin, Yuwana; Kaestli, Mirjam; McMahon, Nicole; Hennessy, Jann; Ngian, Hie Ung; Wong, Jin Shyan; Mohana, Anand; Wong, See Chang; William, Timothy; Mayo, Mark; Baird, Robert W; Currie, Bart J

2013-09-01

Misidentifications of Burkholderia pseudomallei as Burkholderia cepacia by Vitek 2 have occurred. Multidimensional scaling ordination of biochemical profiles of 217 Malaysian and Australian B. pseudomallei isolates found clustering of misidentified B. pseudomallei isolates from Malaysian Borneo. Specificity of B. pseudomallei identification in Vitek 2 and potentially other automated identification systems is regionally dependent.

78 FR 69376 - Endangered and Threatened Wildlife; 90-Day Finding on a Petition To List 19 Species and 3...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-19

... observed concentrations of contaminants in sharks, with those sharks found in contamination hot spots (such... of Hg contamination due to urban, industrial, and natural source inputs (Storelli et al., 2003; Mull... that appears to be found exclusively off Sarawak, Malaysia on Borneo. It is a small shark, with an...

The last sea nomads of the Indonesian archipelago: genomic origins and dispersal

PubMed Central

Kusuma, Pradiptajati; Brucato, Nicolas; Cox, Murray P; Letellier, Thierry; Manan, Abdul; Nuraini, Chandra; Grangé, Philippe; Sudoyo, Herawati; Ricaut, François-Xavier

2017-01-01

The Bajo, the world’s largest remaining sea nomad group, are scattered across hundreds of recently settled communities in Island Southeast Asia, along the coasts of Indonesia, Malaysia and the Philippines. With a significant role in historical trading, the Bajo lived until recently as nomads, spending their entire lives on houseboats while moving long distances to fish and trade. Along the routes they traveled, the Bajo settled and intermarried with local land-based groups, leading to ‘maritime creolization’, a process whereby Bajo communities retained their culture, but assimilated – and frequently married into – local groups. The origins of the Bajo have remained unclear despite several hypotheses from oral tradition, culture and language, all currently without supporting genetic evidence. Here, we report genome-wide SNP analyses on 73 Bajo individuals from three communities across Indonesia – the Derawan of Northeast Borneo, the Kotabaru of Southeast Borneo and the Kendari of Southeast Sulawesi, with 87 new samples from three populations surrounding the area where these Bajo peoples live. The Bajo likely share a common connection with Southern Sulawesi, but crucially, each Bajo community also exhibits unique genetic contributions from neighboring populations. PMID:28513608

Phylogeographic Pattern of the Striped Snakehead, Channa striata in Sundaland: Ancient River Connectivity, Geographical and Anthropogenic Singnatures

PubMed Central

Tan, Min Pau; Jamsari, Amirul Firdaus Jamaluddin; Siti Azizah, Mohd Nor

2012-01-01

A phylogeographic study of an economically important freshwater fish, the striped snakehead, Channa striata in Sundaland was carried out using data from mtDNA ND5 gene target to elucidate genetic patterning. Templates obtained from a total of 280 individuals representing 24 sampling sites revealed 27 putative haplotypes. Three distinct genetic lineages were apparent; 1)northwest Peninsular Malaysia, 2)southern Peninsular, east Peninsular, Sumatra and SW (western Sarawak) and 3) central west Peninsular and Malaysian Borneo (except SW). Genetic structuring between lineages showed a significant signature of natural geographical barriers that have been acting as effective dividers between these populations. However, genetic propinquity between the SW and southern Peninsular and east Peninsular Malaysia populations was taken as evidence of ancient river connectivity between these regions during the Pleistocene epoch. Alternatively, close genetic relationship between central west Peninsular Malaysia and Malaysian Borneo populations implied anthropogenic activities. Further, haplotype sharing between the east Peninsular Malaysia and Sumatra populations revealed extraordinary migration ability of C. striata (>500 km) through ancient connectivity. These results provide interesting insights into the historical and contemporary landscape arrangement in shaping genetic patterns of freshwater species in Sundaland. PMID:23284881

Maintaining Identity Political Culture In Indonesia

NASA Astrophysics Data System (ADS)

Fauzi, AM; Sudrajat, A.; Affandi, A.; Raditya, A.

2018-01-01

This study investigates the portrayal of traditional political cultures in West Kalimantan Province, a growing of election process. Results showed that Political life in Indonesia leads to modern political culture after experiencing a change of paradigm of political life. Political life in Indonesia leads to modern political culture after experiencing a change of paradigm of political life. Beginning Indonesia’s independence in the Old Order Phase, the politics used using the ideological paradigm, subsequent to the New Order Period used the political paradigm of unification and simplification of political parties but in practice it became the strategy of the State’s rulers to facilitate subjugating its citizens. After entering the reform era, several phenomena of political culture are displayed, some are using modern paradigm by giving women the widest possible role in political parties, and so on. Besides that there is the opposite of displaying and practicing traditional political culture, this is as it runs in West Borneo Province. The change of political culture in the modern direction is different from the political culture of the citizens in terms of who will be chosen, most West Borneo Province residents determine their political choice by using traditional patterns.

Ant diversity as a direct and indirect driver of pselaphine rove beetle (Coleoptera: Staphylinidae) functional diversity in tropical rainforests, Sabah, Malaysian Borneo.

PubMed

Psomas, Elizabeth; Holdsworth, Sholto; Eggleton, Paul

2018-04-20

Pselaphinae is a species-rich beetle subfamily found globally, with many exhibiting myrmecophily-a symbiotic association with ants. Pselaphine-ant associations vary from facultative to obligate, but direct behavioral observations still remain scarce. Pselaphines are speciose and ecologically abundant within tropical leaf litter invertebrate communities where ants dominate, implying a potentially important ecological role that may be affected by habitat disturbances that impact ants. In this study, we measured and analyzed putative functional traits of leaf litter pselaphines associated with myrmecophily through morphometric analysis. We calculated "myrmecophile functional diversity" of pselaphines at different sites and examined this measure's relationship with ant abundance, in both old growth and logged rainforest sites in Sabah, Borneo. We show that myrmecophile functional diversity of pselaphine beetles increases as ant abundance increases. Old growth rainforest sites support a high abundance of ants, which is associated with a high abundance of probable myrmecophilous pselaphines. These results suggest a potential link between adult morphological characters and the functional role these beetles play in rainforest litter as ecological interaction partners with ants. © 2018 Wiley Periodicals, Inc.

The impact of local surface changes in Borneo on atmospheric composition at wider spatial scales: coastal processes, land-use change and air quality

PubMed Central

Pyle, J. A.; Warwick, N. J.; Harris, N. R. P.; Abas, Mohd Radzi; Archibald, A. T.; Ashfold, M. J.; Ashworth, K.; Barkley, Michael P.; Carver, G. D.; Chance, K.; Dorsey, J. R.; Fowler, D.; Gonzi, S.; Gostlow, B.; Hewitt, C. N.; Kurosu, T. P.; Lee, J. D.; Langford, S. B.; Mills, G.; Moller, S.; MacKenzie, A. R.; Manning, A. J.; Misztal, P.; Nadzir, Mohd Shahrul Mohd; Nemitz, E.; Newton, H. M.; O'Brien, L. M.; Ong, Simon; Oram, D.; Palmer, P. I.; Peng, Leong Kok; Phang, Siew Moi; Pike, R.; Pugh, T. A. M.; Rahman, Noorsaadah Abdul; Robinson, A. D.; Sentian, J.; Samah, Azizan Abu; Skiba, U.; Ung, Huan Eng; Yong, Sei Eng; Young, P. J.

2011-01-01

We present results from the OP3 campaign in Sabah during 2008 that allow us to study the impact of local emission changes over Borneo on atmospheric composition at the regional and wider scale. OP3 constituent data provide an important constraint on model performance. Treatment of boundary layer processes is highlighted as an important area of model uncertainty. Model studies of land-use change confirm earlier work, indicating that further changes to intensive oil palm agriculture in South East Asia, and the tropics in general, could have important impacts on air quality, with the biggest factor being the concomitant changes in NOx emissions. With the model scenarios used here, local increases in ozone of around 50 per cent could occur. We also report measurements of short-lived brominated compounds around Sabah suggesting that oceanic (and, especially, coastal) emission sources dominate locally. The concentration of bromine in short-lived halocarbons measured at the surface during OP3 amounted to about 7 ppt, setting an upper limit on the amount of these species that can reach the lower stratosphere. PMID:22006963

The impact of local surface changes in Borneo on atmospheric composition at wider spatial scales: coastal processes, land-use change and air quality.

PubMed

Pyle, J A; Warwick, N J; Harris, N R P; Abas, Mohd Radzi; Archibald, A T; Ashfold, M J; Ashworth, K; Barkley, Michael P; Carver, G D; Chance, K; Dorsey, J R; Fowler, D; Gonzi, S; Gostlow, B; Hewitt, C N; Kurosu, T P; Lee, J D; Langford, S B; Mills, G; Moller, S; MacKenzie, A R; Manning, A J; Misztal, P; Nadzir, Mohd Shahrul Mohd; Nemitz, E; Newton, H M; O'Brien, L M; Ong, Simon; Oram, D; Palmer, P I; Peng, Leong Kok; Phang, Siew Moi; Pike, R; Pugh, T A M; Rahman, Noorsaadah Abdul; Robinson, A D; Sentian, J; Samah, Azizan Abu; Skiba, U; Ung, Huan Eng; Yong, Sei Eng; Young, P J

2011-11-27

We present results from the OP3 campaign in Sabah during 2008 that allow us to study the impact of local emission changes over Borneo on atmospheric composition at the regional and wider scale. OP3 constituent data provide an important constraint on model performance. Treatment of boundary layer processes is highlighted as an important area of model uncertainty. Model studies of land-use change confirm earlier work, indicating that further changes to intensive oil palm agriculture in South East Asia, and the tropics in general, could have important impacts on air quality, with the biggest factor being the concomitant changes in NO(x) emissions. With the model scenarios used here, local increases in ozone of around 50 per cent could occur. We also report measurements of short-lived brominated compounds around Sabah suggesting that oceanic (and, especially, coastal) emission sources dominate locally. The concentration of bromine in short-lived halocarbons measured at the surface during OP3 amounted to about 7 ppt, setting an upper limit on the amount of these species that can reach the lower stratosphere.

Borneo Vortices: A case study and its relation to climatology

NASA Astrophysics Data System (ADS)

Braesicke, P.; Ooi, S. H.; Samah, A. A.

2012-04-01

Borneo vortices (BVs) develop over the South China Sea and are main drivers for the formation of deep convection and heavy rainfall in East Malaysia. We present a case study of a cold-surge-induced BV during January 2010 in which the export of potential energy lead to a strengthening of the subtropical jet. Potential vorticity (PV) and water vapour analyses confirm a significant impact of the BV on upper tropospheric composition. Dry, high PV air is found far below 100 hPa in the vicinty of the vortex. Using a PV threshold analysis of ERA-Interim data we construct a climatological composite of similar events and characterise the thermal, dynamical and composition structure of a 'typical' BV. We note the preferential formation of BVs during ENSO cold conditions and show that two effects contribute to the formation of the dry upper layer above a BV: Air is vertically transported upwards in the BV whilst precipitating and the large scale flow in which the BV is embedded advect dry, ozone rich air from the equatorial TTL over the BV. Thus the occurence frequency of BVs is important for the regional variability of upper tropospheric/lower stratospheric composition.

MODIS data used to study 2002 fires in Kalimantan, Indonesia

NASA Astrophysics Data System (ADS)

Fuller, Douglas O.

Smoke and haze blanketed western Indonesia during August and September 2002, signaling the arrival of another El Niño event in Southeast Asia. Although not as severe as the 1997-1998 El Niño event, the 2002 El Niño produced drought conditions in western Indonesia that favored extensive biomass burning in lowland areas of Borneo, Sumatra, and Sulawesi, three of the largest islands that form part of the vast Indonesian archipelago. Data derived from the Moderate Resolution Imaging Spectrometer (MODIS) on board the NASA Terra satellite showed that most of the burning during 2002 occurred in central and western Kalimantan (Indonesian Borneo), where forests are being cleared to make way for industrial oil palm and pulp plantations.Comparison of fire data from several different satellite sensors also reveals that fires detected in Kalimantan during 1997 appeared more numerous (Figure 1) and burned over a longer period (Figure 2) than fires that burned in late 2002 (see discussion below). This result is consistent with recent El Niño observations that characterize the current event as moderate relative to the 1997-1998 event (see http://www.cpc.ncep.noaa.gov/ products/analysis_monitoring/enso_advisory/).

Hepatozoon parasites (Apicomplexa: Adeleorina) in bats.

PubMed

Pinto, C Miguel; Helgen, Kristofer M; Fleischer, Robert C; Perkins, Susan L

2013-08-01

We provide the first evidence of Hepatozoon parasites infecting bats. We sequenced a short fragment of the 18S rRNA gene (~600 base pairs) of Hepatozoon parasites from 3 Hipposideros cervinus bats from Borneo. Phylogenies inferred by model-based methods place these Hepatozoon within a clade formed by parasites of reptiles, rodents, and marsupials. We discuss the scenario that bats might be common hosts of Hepatozoon.

ASEAN’s (Association of Southeast Asian Nations) Neighborhood,

DTIC Science & Technology

1986-01-01

together to form Malaysia . In the Philippines. President Diosdado Macapagal claimed that one of Malaysia’s new states, Sabah, formerly British North Borneo...was by tradition and treaty actually Philippine territory; and from Indonesia, Sukarno attacked Malaysia as a neo-imperialist concoction and launched...Foreign Minister, Adam Malik, joined senior officials from Thailand, Malaysia , the Philippines and Singapore (which had separated from Malaysia in 1965

Physicochemical and antioxidant properties of Malaysian honeys produced by Apis cerana, Apis dorsata and Apis mellifera.

PubMed

Moniruzzaman, Mohammed; Khalil, Md Ibrahim; Sulaiman, Siti Amrah; Gan, Siew Hua

2013-02-23

The aim of the present study was to evaluate the physicochemical and antioxidant properties of Malaysian monofloral honey samples-acacia, pineapple and borneo honey-and compare them with tualang honey. Acacia and pineapple honey are produced by Apis mellifera bees while borneo and tualang honey are produced by Apis cerana and Apis dorsata bees, respectively. The physical parameters of honey, such as pH, moisture content, electrical conductivity (EC), total dissolved solids (TDS), color intensity, total sugar and apparent sucrose content, were measured. Hydroxymethylfurfural (HMF) was measured using high performance liquid chromatography, and a number of biochemical and antioxidant tests were performed to determine the antioxidant properties of the honey samples. Acacia honey was the most acidic (pH 3.53), whereas pineapple honey had the lowest moisture content (14.86%), indicating that both types of honey can resist microbial spoilage more effectively when compared to tualang honey (pH 3.80 and 17.53% moisture content). Acacia honey contained the highest EC (0.76 mS/cm), whereas borneo honey had the highest (377 ppm) TDS. The mean HMF content in Malaysian honey was 35.98 mg/kg. Tualang honey, which is amber color, had the highest color intensity (544.33 mAU). Acacia honey is the sweetest, and contained the highest concentration of total sugar, reducing sugar and apparent sucrose. Tualang honey had the highest concentration of phenolic compounds (352.73 ± 0.81 mg galic acid/kg), flavonoids (65.65 ± 0.74 mg catechin/kg), DPPH (59.89%), FRAP values (576.91 ± 0.64 μM Fe (II)/100 g) and protein content (4.83 ± 0.02 g/kg) as well as the lowest AEAC values (244.10 ± 5.24 mg/kg), indicating its strong antioxidant properties. Proline, an important amino acid that is present in honey was also measured in the present study and it was found at the highest concentration in pineapple honey. Several strong correlations were found among the biochemical and antioxidant parameters of all the Malaysian honeys. Although Malaysian honeys are of good quality, tualang honey contains the strongest antioxidant properties by far.

Reducing Greenhouse Gas Emissions from Agricultural Wetlands in Borneo

NASA Astrophysics Data System (ADS)

Abdul, H.; Fatah, L.; Nursyamsi, D.; Kazuyuki, I.

2011-12-01

At the forum G20 meeting in 2009, Indonesian President delivered Indonesia's commitment to reduce national greenhouse gas (GHG) emissions by 26% in 2020 by unilateral action and by 41% with support of other countries. To achieve the target, Indonesian government has put forestry, agriculture (including peatlands), energy, industry and transportation as main responsible sectors. Development of crop with low GHG emissions, increasing C sequestration and the use of organic fertilizers are among the activities to be carried out in 2010-2020 period to minimize GHG emissions from agricultural sectors. Three experiments have been carried out to elucidate the reflectivity of crop selection, soil ameliorants and organic fertilizers on GHG emissions from agricultural wetlands in Borneo. Firstly, gas samples were collected in weekly basis from oil palm, paddy, and vegetables fields and analyzed for methane (CH4) and nitrous oxide (N2O) concentrations by a gas chromatography. Secondly, coal fly ash, dolomite and ZnSO4 were incorporated into a pot containing peat and/or alluvial soils taken from wetlands in South Kalimantan. The air samples were taken and analyzed for CH4 by a gas chromatography. Finally, microbial consortium are isolated from soil, sediment and cow dung. The microbes were then propagated and used in a rice straw composting processes. The CO2, CH4 and N2O emissions from composting vessel were measured at one, two and four weeks of composting processes. The results showed that shifting the use of peatlands for oil palm to vegetable field reduced the GHG emissions by about 74% and that to paddy field reduce the GHG emissions by about 82%. The CH4 emissions from paddy field can be further reduced by applying dolomite. However, the use of coal fly ash and ZnSO4 increased CH4 emissions from peat soil cultivated to rice. The use of microbe isolated from saline soil could reduce GHG emissions during the composting of rice straw. The social aspect of GHG reduction in Borneo will also be discussed.

The Rajang Unconformity: Major provenance change between the Eocene and Miocene sequences in NW Borneo

NASA Astrophysics Data System (ADS)

Breitfeld, H. T.; Hennig, J.; BouDagher-Fadel, M.; Hall, R.

2017-12-01

The offshore Sarawak Basin NW of North Sarawak is a major hydrocarbon province in SE Asia. A very thick sedimentary sequence of Oligocene to ?Early Miocene age, named Cycle 1, is an important hydrocarbon source and reservoir. Despite numerous wells the stratigraphy and tectonic history is not very well understood. The Nyalau Formation of onshore North Sarawak is the supposed equivalent of the offshore Cycle 1 sequence. The Nyalau Formation is a thick sedimentary sequence of mainly tidal to deltaic deposits. The formation is dominated by well-bedded sandstone-mudstone alternations and thicker sandstones with abundant bioturbation. The sandstones are predominantly arenaceous. Various lithic fragments and feldspar indicate multiple sources and fresh input from igneous and metamorphic rocks. Interbedded thin limestone beds and marls yielded Early Miocene foraminifera for the upper part of the succession. Zircons separated from the sandstones yielded mainly Cretaceous and Triassic ages. The Triassic is the dominant age population. The Nyalau Formation conformably overlies the Buan Shale and the Tatau Formation, and in places unconformably overlies the Belaga Formation. The Belaga Formation is part of the Rajang Group that represents remnants of a large submarine fan deposited in the Late Cretaceous to Eocene in Central Sarawak. In contrast to the Nyalau Formation, the majority of zircons from the Rajang Group have Cretaceous ages. This marks an important change in provenance at the major unconformity separating the Belaga and Nyalau Formations. This unconformity was previously interpreted as the result of an orogeny in the Late Eocene. However, there is no evidence for a subduction or collision event at this time in Sarawak. We interpret it to mark plate reorganisation in the Middle Eocene and name it the Rajang Unconformity. Borneo is the principal source of Cretaceous zircons which were derived from the Schwaner Mountains and West Sarawak. The dominant Triassic zircon age population in the Nyalau Formation indicates either major input from the Malay Peninsula (Malay-Thai Tin belt) or Indochina (SE Vietnam). It also suggests that Borneo supplied little or no sediment to Sarawak in the Oligocene to Early Miocene.

Interactions and Inter-relationships Around Text: Practices and Positionings in a Multilingual Classroom in Brunei.

ERIC Educational Resources Information Center

Martin, Peter W.

2003-01-01

Reports on a microethnographic study of a number of classrooms in different areas of Negara Brunei Darussalam, a small Malay Islamic Monarchy on the Northern coast of Borneo, Southeast Asia. Focuses on one classroom in a small up-river school away from the malay center and in one of the few areas in the country where a form of Malay is not the…

Climate regulation of fire emissions and deforestation in equatorial Asia.

PubMed

van der Werf, G R; Dempewolf, J; Trigg, S N; Randerson, J T; Kasibhatla, P S; Giglio, L; Murdiyarso, D; Peters, W; Morton, D C; Collatz, G J; Dolman, A J; DeFries, R S

2008-12-23

Drainage of peatlands and deforestation have led to large-scale fires in equatorial Asia, affecting regional air quality and global concentrations of greenhouse gases. Here we used several sources of satellite data with biogeochemical and atmospheric modeling to better understand and constrain fire emissions from Indonesia, Malaysia, and Papua New Guinea during 2000-2006. We found that average fire emissions from this region [128 +/- 51 (1sigma) Tg carbon (C) year(-1), T = 10(12)] were comparable to fossil fuel emissions. In Borneo, carbon emissions from fires were highly variable, fluxes during the moderate 2006 El Niño more than 30 times greater than those during the 2000 La Niña (and with a 2000-2006 mean of 74 +/- 33 Tg C yr(-1)). Higher rates of forest loss and larger areas of peatland becoming vulnerable to fire in drought years caused a strong nonlinear relation between drought and fire emissions in southern Borneo. Fire emissions from Sumatra showed a positive linear trend, increasing at a rate of 8 Tg C year(-2) (approximately doubling during 2000-2006). These results highlight the importance of including deforestation in future climate agreements. They also imply that land manager responses to expected shifts in tropical precipitation may critically determine the strength of climate-carbon cycle feedbacks during the 21st century.

Hydrological similarity approach and rainfall satellite utilization for mini hydro power dam basic design (case study on the ungauged catchment at West Borneo, Indonesia)

NASA Astrophysics Data System (ADS)

Prakoso, W. G.; Murtilaksono, K.; Tarigan, S. D.; Purwanto, Y. J.

2018-05-01

An approach on flow duration and flood design estimation on the ungauged catchment with no rainfall and discharge data availability was been being develop with hydrological modelling including rainfall run off model implemented with watershed characteristic dataset. Near real time Rainfall data from multi satellite platform e.g. TRMM can be utilized for regionalization approach on the ungauged catchment. Watershed hydrologically similarity analysis were conducted including all of the major watershed in Borneo which was predicted to be similar with the Nanga Raun Watershed. It was found that a satisfactory hydrological model calibration could be achieved using catchment weighted time series of TRMM daily rainfall data, performed on nearby catchment deemed to be sufficiently similar to Nanga Raun catchment in hydrological terms. Based on this calibration, rainfall runoff parameters were then transferred to a model. Relatively reliable flow duration curve and extreme discharge value estimation were produced with reasonable several limitation. Further approach may be performed in order to deal with the primary limitations inherent in the hydrological and statistical analysis, especially to give prolongation to the availability of the rainfall and climate data with some novel approach like downscaling of global climate model.

Biogeographic distribution and metric dental variation of fossil and living orangutans (Pongo spp.).

PubMed

Tshen, Lim Tze

2016-01-01

The genus Pongo has a relatively richer Quaternary fossil record than those of the African great apes. Fossil materials are patchy in terms of anatomical parts represented, limited almost exclusively to isolated teeth, jaw and bone fragments. Fossil evidence indicates that the genus Pongo had a broadly continuous distribution across the southern part of the Indomalayan biogeographic region, ranging in time from Early Pleistocene to Holocene: southern China (77 fossil sites), Vietnam (15), Laos (6), Cambodia (2), Thailand (4), Peninsular Malaysia (6), Sumatra (4), Borneo (6) and Java (4). Within this distribution range, there are major geographical gaps with no known orangutan fossils, notably central and southern Indochina, central and southern Thailand, eastern Peninsular Malaysia, northern and southern Sumatra, and Kalimantan. The geological time and place of origin of the genus remain unresolved. Fossil orangutan assemblages usually show greater extent of dental metrical variation than those of modern-day populations. Such variability shown in prehistoric populations has partially contributed to confusion regarding past taxonomic diversity and systematic relationships among extinct and living forms. To date, no fewer than 14 distinct taxa have been identified and named for Pleistocene orangutans. Clear cases suggestive of predation by prehistoric human are few in number, and limited to terminal Pleistocene-Early Holocene sites in Borneo and a Late Pleistocene site in Vietnam.

Molecular evidence for species-level distinctions in clouded leopards.

PubMed

Buckley-Beason, Valerie A; Johnson, Warren E; Nash, Willliam G; Stanyon, Roscoe; Menninger, Joan C; Driscoll, Carlos A; Howard, JoGayle; Bush, Mitch; Page, John E; Roelke, Melody E; Stone, Gary; Martelli, Paolo P; Wen, Ci; Ling, Lin; Duraisingam, Ratna K; Lam, Phan V; O'Brien, Stephen J

2006-12-05

Among the 37 living species of Felidae, the clouded leopard (Neofelis nebulosa) is generally classified as a monotypic genus basal to the Panthera lineage of great cats. This secretive, mid-sized (16-23 kg) carnivore, now severely endangered, is traditionally subdivided into four southeast Asian subspecies (Figure 1A). We used molecular genetic methods to re-evaluate subspecies partitions and to quantify patterns of population genetic variation among 109 clouded leopards of known geographic origin (Figure 1A, Tables S1 ans S2 in the Supplemental Data available online). We found strong phylogeographic monophyly and large genetic distances between N. n. nebulosa (mainland) and N. n. diardi (Borneo; n = 3 individuals) with mtDNA (771 bp), nuclear DNA (3100 bp), and 51 microsatellite loci. Thirty-six fixed mitochondrial and nuclear nucleotide differences and 20 microsatellite loci with nonoverlapping allele-size ranges distinguished N. n. nebulosa from N. n. diardi. Along with fixed subspecies-specific chromosomal differences, this degree of differentiation is equivalent to, or greater than, comparable measures among five recognized Panthera species (lion, tiger, leopard, jaguar, and snow leopard). These distinctions increase the urgency of clouded leopard conservation efforts, and if affirmed by morphological analysis and wider sampling of N. n. diardi in Borneo and Sumatra, would support reclassification of N. n. diardi as a new species (Neofelis diardi).

Comparative height crown allometry and mechanical design in 22 tree species of Kuala Belalong rainforest, Brunei, Borneo.

PubMed

Osunkoya, Olusegun O; Omar-Ali, Kharunnisa; Amit, Norratna; Dayan, Juita; Daud, Dayanawati S; Sheng, Tan K

2007-12-01

In rainforests, trunk size, strength, crown position, and geometry of a tree affect light interception and the likelihood of mechanical failure. Allometric relationships of tree diameter, wood density, and crown architecture vs. height are described for a diverse range of rainforest trees in Brunei, northern Borneo. The understory species follow a geometric model in their diameter-height relationship (slope, β = 1.08), while the stress-elasticity models prevail (β = 1.27-1.61) for the midcanopy and canopy/emergent species. These relationships changed with ontogeny, especially for the understory species. Within species, the tree stability safety factor (SSF) and relative crown width decreased exponentially with increasing tree height. These trends failed to emerge in across-species comparisons and were reversed at a common (low) height. Across species, the relative crown depth decreased with maximum potential height and was indistinguishable at a common (low) height. Crown architectural traits influence SSF more than structural property of wood density. These findings emphasize the importance of applying a common reference size in comparative studies and suggest that forest trees (especially the understory group) may adapt to low light by having deeper rather than wider crowns due to an efficient distribution and geometry of their foliage.

Linking biogenic hydrocarbons to biogenic aerosol in the Borneo rainforest

NASA Astrophysics Data System (ADS)

Hamilton, J. F.; Alfarra, M. R.; Robinson, N.; Ward, M. W.; Lewis, A. C.; McFiggans, G. B.; Coe, H.; Allan, J. D.

2013-11-01

Emissions of biogenic volatile organic compounds are though to contribute significantly to secondary organic aerosol formation in the tropics, but understanding these transformation processes has proved difficult, due to the complexity of the chemistry involved and very low concentrations. Aerosols from above a Southeast Asian tropical rainforest in Borneo were characterised using liquid chromatography-ion trap mass spectrometry, high-resolution aerosol mass spectrometry and Fourier transform ion cyclotron resonance mass spectrometry (FTICRMS) techniques. Oxygenated compounds were identified in ambient organic aerosol that could be directly traced back to isoprene, monoterpenes and sesquiterpene emissions, by combining field data on chemical structures with mass spectral data generated from synthetically produced products created in a simulation chamber. Eighteen oxygenated species of biogenic origin were identified in the rainforest aerosol from the precursors isoprene, α-pinene, limonene, α-terpinene and β-caryophyllene. The observations provide the unambiguous field detection of monoterpene and sesquiterpene oxidation products in SOA above a pristine tropical rainforest. The presence of 2-methyl tetrol organosulfates and an associated sulfated dimer provides direct evidence that isoprene in the presence of sulfate aerosol can make a contribution to biogenic organic aerosol above tropical forests. High-resolution mass spectrometry indicates that sulfur can also be incorporated into oxidation products arising from monoterpene precursors in tropical aerosol.

Linking biogenic hydrocarbons to biogenic aerosol in the Borneo rainforest

NASA Astrophysics Data System (ADS)

Hamilton, J. F.; Alfarra, M. R.; Robinson, N.; Ward, M. W.; Lewis, A. C.; McFiggans, G. B.; Coe, H.; Allan, J. D.

2013-07-01

Emissions of biogenic volatile organic compounds are though to contribute significantly to secondary organic aerosol formation in the tropics, but understanding the process of these transformations has proved difficult, due to the complexity of the chemistry involved and very low concentrations. Aerosols from above a South East Asian tropical rainforest in Borneo were characterised using liquid chromatography-ion trap mass spectrometry, high resolution aerosol mass spectrometry and fourier transform ion cyclotron resonance mass spectrometry (FTICRMS) techniques. Oxygenated compounds were identified in ambient organic aerosol that could be directly traced back to isoprene, monoterpenes and sesquiterpene emissions, by combining field data on chemical structures with mass spectral data generated from synthetically produced products created in a simulation chamber. Eighteen oxygenated species of biogenic origin were identified in the rainforest aerosol from the precursors isoprene, α-pinene, limonene, α-terpinene and β-caryophyllene. The observations provide the unambiguous field detection of monoterpene and sesquiterpene oxidation products in SOA above a pristine tropical rainforest. The presence of 2-methyltetrol organosulfates and an associated sulfated dimer provides direct evidence that isoprene in the presence of sulfate aerosol can make a contribution to biogenic organic aerosol above tropical forests. High-resolution mass spectrometry indicates that sulfur can also be incorporated into oxidation products arising from monoterpene precursors in tropical aerosol.

A Historical Perspective on Light Infantry

DTIC Science & Technology

1987-01-01

which were scarce) expecting the enemy to use them in building fires. In another case, the CCF draped a large wire entanglement across a village...Jungle Frontier: 92 Special Air Service Regiment in the Borneo Campaign, 1963-1966 (London: Arms and Armour Press, 1985), 65, 57. Lieutenant Colonel P. E...1963-1966. London: Arms and Armour Press, 1985. Foxley-Norris, C. N., Air Vice Marshal, "Air Aspects of Operations Against ’Confrontation.’ " In

Collapsed Thunderstorm, Southwest Pacific Ocean

NASA Technical Reports Server (NTRS)

1992-01-01

This collapsed thunderstorm was observed over the open ocean (9.0N, 120.0E) between the Philippine island of Mindoro and Borneo, Malaysia. The cleared area in the center is the result of the clouds being driven from there by the sudden rush of katabatic air spreading downward and outward from the dying thunderstorm. Around the edges of the downdrafted air, new though smaller storms are developing. The two small coral atolls are the Tubbataha Reefs.

River Plumes in Sunglint, Sarawak, Borneo

NASA Technical Reports Server (NTRS)

1991-01-01

The sunglint pattern along the coast of Sarawak (3.0N, 111.5E) delineates the boundry of fresh water river plumes as they flow into the South China Sea. The fresh water lens (boundry between fresh and sea water) overides the saline and more dense sea water and oils, both natural and man made, collect along the convergence zones and dampen wave action. As a result, the smoother sea surface appears bright in the sunglint pattern.

Heavy Metals (Cd, Cu, Cr, Pb and Zn) in Meretrix meretrix Roding, Water and Sediments from Estuaries in Sabah, North Borneo

ERIC Educational Resources Information Center

Abdullah, Mohd. Harun; Sidi, Jovita; Aris, Ahmad Zaharin

2007-01-01

Concentrations of heavy metals (Cd, Cu, Cr, Pb and Zn) in tissues of Meretrix meretrix Roding (M. meretrix R.), water and sediments from two estuaries were determined. One estuary is located in an urban area of Kota Kinabalu (Likas estuary) and the other in a rural district of Kota Belud (Kota Belud estuary), where both are in Sabah, North of…

Physicochemical and antioxidant properties of Malaysian honeys produced by Apis cerana, Apis dorsata and Apis mellifera

PubMed Central

2013-01-01

Background The aim of the present study was to evaluate the physicochemical and antioxidant properties of Malaysian monofloral honey samples—acacia, pineapple and borneo honey—and compare them with tualang honey. Acacia and pineapple honey are produced by Apis mellifera bees while borneo and tualang honey are produced by Apis cerana and Apis dorsata bees, respectively. Methods The physical parameters of honey, such as pH, moisture content, electrical conductivity (EC), total dissolved solids (TDS), color intensity, total sugar and apparent sucrose content, were measured. Hydroxymethylfurfural (HMF) was measured using high performance liquid chromatography, and a number of biochemical and antioxidant tests were performed to determine the antioxidant properties of the honey samples. Results Acacia honey was the most acidic (pH 3.53), whereas pineapple honey had the lowest moisture content (14.86%), indicating that both types of honey can resist microbial spoilage more effectively when compared to tualang honey (pH 3.80 and 17.53% moisture content). Acacia honey contained the highest EC (0.76 mS/cm), whereas borneo honey had the highest (377 ppm) TDS. The mean HMF content in Malaysian honey was 35.98 mg/kg. Tualang honey, which is amber color, had the highest color intensity (544.33 mAU). Acacia honey is the sweetest, and contained the highest concentration of total sugar, reducing sugar and apparent sucrose. Tualang honey had the highest concentration of phenolic compounds (352.73 ± 0.81 mg galic acid/kg), flavonoids (65.65 ± 0.74 mg catechin/kg), DPPH (59.89%), FRAP values (576.91 ± 0.64 μM Fe (II)/100 g) and protein content (4.83 ± 0.02 g/kg) as well as the lowest AEAC values (244.10 ± 5.24 mg/kg), indicating its strong antioxidant properties. Proline, an important amino acid that is present in honey was also measured in the present study and it was found at the highest concentration in pineapple honey. Several strong correlations were found among the biochemical and antioxidant parameters of all the Malaysian honeys. Conclusion Although Malaysian honeys are of good quality, tualang honey contains the strongest antioxidant properties by far. PMID:23433009

Impact of the 2015/2016 El Niño event on rainwater and cave dripwater isotopes in Northern Borneo

NASA Astrophysics Data System (ADS)

Ellis, S. A.; Cobb, K. M.; Moerman, J. W.; Bennett, A. L.; Gerstner, H.; Malang, J.; Wong, C. I.

2017-12-01

Paleoclimate reconstructions of past hydrological variability are primarily comprised of water isotope timeseries, and vastly extend sparse instrumental precipitation data from many key areas of the world. At Gunung Mulu National Park in Northern Borneo (4N 115E), stalagmite oxygen isotope (δ18O) records provide a view of western tropical Pacific hydroclimate across much of the last 500,000 years [Partin et al. 2007, Carolin et al. 2013, 2016] including a recent study of past ENSO extremes across the Holocene [Chen et al. 2016]. The climatic interpretation of the N. Borneo stalagmite δ18O records is based on analysis of a 6.5-yr-long timeseries of daily rainfall δ18O, and companion timeseries of cave dripwater δ18O from Gunung Mulu [Moerman et al. 2013, 2014]. Taken together, these studies demonstrate rainfall δ18O acts as a robust proxy for regional convective activity (via the amount effect), which is transmitted into the caves over a period of 2-10 months. However, these findings are highly dependent on the magnitude of the observed changes during the study period, which did not include a strong El Nino event. Here we present an extension of the world's longest running daily rainfall δ18O time series and biweekly cave dripwater δ18O timeseries to span the period from 2012 to 2017, creating an 11-yr-long timeseries for analysis of climatic and karst influences on observed rainwater and dripwater δ18O. Most notably, our new time series captures the very strong 2015/2016 El Niño event. Dramatic reductions in rainfall at Mulu ( 25% across DJF) were accompanied by a 6‰ increase in rainfall δ18O. Cave dripwaters also record the influence of 2015/2016 El Niño event through significantly reduced drip rates as well as 2-4‰, increases in dripwater δ18O. We present compelling evidence that dripwater residence times vary across the expanded time-series - most notably during the 2015/2016 El Niño event. Our results carry important implications for the interpretation of high-resolution stalagmite δ18O timeseries from our site as well as other stalagmite reconstruction sites around the world, given that most studies assume a relatively constant dripwater residence time.

Borneo stalagmites reveal climatic excursions associated with Toba ash layers prior to Greenland Stadial 20

NASA Astrophysics Data System (ADS)

Cobb, K. M.; Orland, I. J.; Carolin, S.; Adkins, J. F.; Valley, J. W.; Jersild, A.; LeGrande, A. N.; Colose, C.

2017-12-01

The Toba super-eruption occurred in close association with an abrupt climate transition from Greenland Interstadial (GI-) 20 to Greenland Stadial (GS-) 20, roughly 74 thousand years ago. However, recent attempts to characterize either the regional or global climate response to Toba have been limited by a lack of age control, geographic proximity, and/or convincing marker of the major eruption in most high-resolution paleoclimate archives. Here, we use a suite of micro-scale analytical techniques to evaluate the oxygen isotopic and geochemical composition of multiple stalagmites that grew across the Toba interval in Gunung Mulu National Park, northern Borneo. New timeseries of stalagmite d18O at 50-micron scales across the Toba horizon revleal a large (>1‰), rapid (<200 yr) increase in d18O values within age-error of the 40Ar/39Ar age of the Youngest Toba Tuff (73.9±0.6 ky BP; Storey et al., 2012). We supplement these traditional mass spectrometric measurements with d18O timeseries made on 9-micron spots using the WiscSIMS CAMECA ims 1280 ion microprobe in time-transgressive segments across the Toba horizon in two well-dated stalagmites previously published in Carolin et al., 2013 and Caroline et al., 2014. The SIMS d18O data reveal high-frequency d18O excursions of +2 and -2 per mil during the transition from GI-20 (warm conditions) to Greenland Stadial GS-20 (cool conditions), suggesting that this period was characterized by large fluctuations in regional hydroclimate in the western tropical Pacific, with potentially profound impacts on global atmospheric circulation. We also present results from synchrotron analyses of ash-related elements (S, P, Si, and Al) to resolve the number and relative magnitude of Toba-related eruptions as recorded in several different stalagmites from Borneo, where ash layers likely exceeded 2cm on the overlying terrain. Together, these results indicate that large, rapid ( 10yr-long) environmental changes with marked effects on both the vegetation and hydroclimate above the cave may have been triggered by discrete eruptions of the Toba caldera. We investigate the regional hydroclimate responses to the Toba super-eruption in the isotope-equipped NASA-GISS coupled climate model across a range of eruption sizes, number, and duration.

Proto-South China Sea plate tectonics using subducted slab constraints from tomography

NASA Astrophysics Data System (ADS)

Wu, J.; Suppe, J.

2017-12-01

The geology of the South China Sea and surrounding margins is intimately tied to the subduction of its predecessor, the proto-South China Sea. However, published plate reconstructions have shown highly variable sizes and locations for the proto-South China Sea. Despite these differences, most studies agree that the proto-South China Sea was subducted southwards under north Borneo in the Cenozoic. Here we present new details on proto-South China Sea paleogeography using mapped and unfolded slabs from seismic tomography following Wu et al. (2016). We show that most of the proto-South China Sea lithosphere lies directly under the South China Sea and is represented by an extensive (>1000 km N-S) swath of detached, sub-horizontal slab at 450 to 700 km depth, here called the `northern Proto-South China Sea'. Furthermore, slab unfolding shows that prior to subduction at the Manila Trench, the eastern limit of the South China Sea, lay directly above the edge of the `northern Proto-South China Sea', both extending 400 to 500 km to the east of the present Manila trench. These observations show that the South China Sea opened directly above a northward-subducting `northern Proto-South China Sea', which runs counter to most proto-South China Sea plate models. We present a slab-constrained plate reconstruction that shows the proto-South China Sea was consumed by double-sided subduction to both the north and south, as follows: [1] The `northern proto-South China Sea' subducted in the Oligocene-Miocene under the Dangerous Grounds and southward expanding South China Sea by in-place 'self subduction' similar to the western Mediterranean basins. [2] Limited southward subduction of the proto-South China Sea under Borneo occurred pre-Oligocene, represented by the 'southern Proto-South China Sea' slab at 800 to 900 km depths. Our plate reconstruction implies the southern South China Sea was an active margin during South China Sea opening and had a south-facing arc and a north-dipping proto-South China Sea slab. A southern South China Sea arc was likely underthrusted under northern Borneo after 15 Ma. Our model also predicts the formation of a mantle wedge under the South China Sea during seafloor spreading. This suggests that South China Sea opening was accompanied by a more vigorous asthenospheric circulation than previously recognized.

Ocean Nowcast/Forecast Systems for Naval Undersea Capability

DTIC Science & Technology

2007-01-01

Tonkin to the Taiwan Strait is consistently nearly 70 m deep, averaging 150 km in width; the central deep basin is 1900 km along its major axis...shaped basin in the center, and numerous reef islands 5 and underwater plateaus scattered throughout. The shelf that extends from the Gulf of...connection between southeastern Asia, Malaysia, Sumatra , Java, and Borneo and reaches 100 m depth in the middle; the center of the Gulf of Thailand is about

The China Factor in U.S.-Vietnam Relations

DTIC Science & Technology

2012-03-01

James Shoal off Malaysian Borneo. Vietnam also claims a sizeable portion of the South China Sea, including the Paracel and Spratly islands in their...rattled Hanoi in recent years include:  Asserting China’s ‘historic’ claim over the South China Sea: In May 2009, China rejected a joint Malaysian ...cooperate with Hanoi in offshore drilling, with a state-owned Indian firm buying out part of BP’s stake in a South China Sea joint venture with PetroVietnam

Additions to the knowledge of the land snails of Sabah (Malaysia, Borneo), including 48 new species

PubMed Central

Vermeulen, Jaap J.; Liew, Thor-Seng; Schilthuizen, Menno

2015-01-01

Abstract We present reviews of the Sabah (Malaysia, on the island of Borneo) species of the following problematical genera of land snails (Mollusca, Gastropoda): Acmella and Anaglyphula (Caenogastropoda: Assimineidae); Ditropopsis (Caenogastropoda: Cyclophoridae); Microcystina (Pulmonata: Ariophantidae); Philalanka and Thysanota (Pulmonata: Endodontidae); Kaliella, Rahula, (Pulmonata: Euconulidae); Trochomorpha and Geotrochus (Pulmonata: Trochomorphidae). Next to this, we describe new species in previously revised genera, such as Diplommatina (Diplommatinidae); Georissa (Hydrocenidae); as well as some new species of genera not revised previously, such as Japonia (Cyclophoridae); Durgella and Dyakia (Ariophantidae); Amphidromus, and Trachia (Camaenidae); Paralaoma (Punctidae); Curvella (Subulinidae). All descriptions are based on the morphology of the shells. We distinguish the following 48 new species: Acmella cyrtoglyphe, Acmella umbilicata, Acmella ovoidea, Acmella nana, Acmella subcancellata, Acmella striata, and Anaglyphula sauroderma (Assimineidae); Ditropopsis davisoni, Ditropopsis trachychilus, Ditropopsis constricta, Ditropopsis tyloacron, Ditropopsis cincta, and Japonia anceps (Cyclophoridae); Diplommatina bidentata and Diplommatina tylocheilos (Diplommatinidae); Georissa leucococca and Georissa nephrostoma (Hydrocenidae); Durgella densestriata, Dyakia chlorosoma, Microcystina microrhynchus, Microcystina callifera, Microcystina striatula, Microcystina planiuscula, and Microcystina physotrochus (Ariophantidae); Amphidromus psephos and Trachia serpentinitica (Camaenidae); Philalanka tambunanensis, Philalanka obscura, Philalanka anomphala, Philalanka rugulosa, and Philalanka malimgunung (Endodontidae); Kaliella eurytrochus, Kaliella sublaxa, Kaliella phacomorpha, Kaliella punctata, Kaliella microsoma, Rahula delopleura, (Euconulidae); Paralaoma angusta (Punctidae); Curvella hadrotes (Subulinidae); Trochomorpha trachus, Trochomorpha haptoderma, Trochomorpha thelecoryphe, Geotrochus oedobasis, Geotrochus spilokeiria, Geotrochus scolops, Geotrochus kitteli, Geotrochus subscalaris, and Geotrochus meristorhachis (Trochomorphidae). PMID:26692803

Targeted conservation to safeguard a biodiversity hotspot from climate and land-cover change.

PubMed

Struebig, Matthew J; Wilting, Andreas; Gaveau, David L A; Meijaard, Erik; Smith, Robert J; Fischer, Manuela; Metcalfe, Kristian; Kramer-Schadt, Stephanie

2015-02-02

Responses of biodiversity to changes in both land cover and climate are recognized [1] but still poorly understood [2]. This poses significant challenges for spatial planning as species could shift, contract, expand, or maintain their range inside or outside protected areas [2-4]. We examine this problem in Borneo, a global biodiversity hotspot [5], using spatial prioritization analyses that maximize species conservation under multiple environmental-change forecasts. Climate projections indicate that 11%-36% of Bornean mammal species will lose ≥ 30% of their habitat by 2080, and suitable ecological conditions will shift upslope for 23%-46%. Deforestation exacerbates this process, increasing the proportion of species facing comparable habitat loss to 30%-49%, a 2-fold increase on historical trends. Accommodating these distributional changes will require conserving land outside existing protected areas, but this may be less than anticipated from models incorporating deforestation alone because some species will colonize high-elevation reserves. Our results demonstrate the increasing importance of upland reserves and that relatively small additions (16,000-28,000 km(2)) to the current conservation estate could provide substantial benefits to biodiversity facing changes to land cover and climate. On Borneo, much of this land is under forestry jurisdiction, warranting targeted conservation partnerships to safeguard biodiversity in an era of global change. Copyright © 2015 Elsevier Ltd. All rights reserved.

Biodiversity conservation values of fragmented communally reserved forests, managed by indigenous people, in a human-modified landscape in Borneo.

PubMed

Takeuchi, Yayoi; Soda, Ryoji; Diway, Bibian; Kuda, Tinjan Ak; Nakagawa, Michiko; Nagamasu, Hidetoshi; Nakashizuka, Tohru

2017-01-01

This study explored the conservation values of communally reserved forests (CRFs), which local indigenous communities deliberately preserve within their area of shifting cultivation. In the current landscape of rural Borneo, CRFs are the only option for conservation because other forested areas have already been logged or transformed into plantations. By analyzing their alpha and beta diversity, we investigated how these forests can contribute to restore regional biodiversity. Although CRFs were fragmented and some had been disturbed in the past, their tree species diversity was high and equivalent to that of primary forests. The species composition of intact forests and forests disturbed in the past did not differ clearly, which indicates that past logging was not intensive. All CRFs contained unique and endangered species, which are on the IUCN Red List, Sarawak protected plants, or both. On the other hand, the forest size structure differed between disturbed and intact CRFs, with the disturbed CRFs consisting of relatively smaller trees. Although the beta diversity among CRFs was also high, we found a high contribution of species replacement (turnover), but not of richness difference, in the total beta diversity. This suggests that all CRFs have a conservation value for restoring the overall regional biodiversity. Therefore, for maintaining the regional species diversity and endangered species, it would be suitable to design a conservation target into all CRFs.

Revision of the genus Devadatta Kirby, 1890 in Borneo based on molecular and morphological methods, with descriptions of four new species (Odonata: Zygoptera: Devadattidae).

PubMed

Dow, Rory A; Hämäläinen, Matti; Stokvis, Frank R

2015-10-23

Species of Devadatta from Borneo are studied using both morphological and molecular methods. As well as D. podolestoides Laidlaw, four new species are recognised from the island: D. aran spec. nov. (holotype ♂, from Pulong Tau National Park, Miri division, Sarawak, Malaysia, deposited in RMNH), D. clavicauda spec. nov. (holotype ♂, from Bukit Mina, Bukit Mina Wildlife Corridor, Sarawak Planted Forest Project, Bintulu division, Sarawak, Malaysia, deposited in RMNH), D. somoh spec. nov. (holotype ♂, from the Sungai Kahei area, Ulu Balui, Kapit division, Sarawak, Malaysia, deposited in RMNH) and D. tanduk spec. nov. (holotype ♂, from Poring Hot Springs, Kinabalu National Park, West Coast division, Sabah, Malaysia, deposited in RMNH). The Philippine taxon D. basilanensis Laidlaw is considered a good species rather than a subspecies of D. podolestoides. The Bornean species plus D. basilanensis are provisionally considered to form a species group, the podolestoides-group, within Devadatta. The species of the podolestoides-group are so similar in morphology and colouration that they are close to truly cryptic species. Two species appear to exhibit character displacement where their ranges overlap with other Devadatta species. A molecular analysis using four markers (COI, 16S, ITS and 28S) is presented. This analysis includes specimens of all species from the podolestoides-group and two Devadatta species from mainland Asia.

Molecular Evidence for Species-Level Distinctions in Clouded Leopards

PubMed Central

Buckley-Beason, Valerie A.; Johnson, Warren E.; Nash, Willliam G.; Stanyon, Roscoe; Menninger, Joan C.; Driscoll, Carlos A.; Howard, JoGayle; Bush, Mitch; Page, John E.; Roelke, Melody E.; Stone, Gary; Martelli, Paolo P.; Wen, Ci; Ling, Lin; Duraisingam, Ratna K.; Lam, Phan V.

2017-01-01

Summary Among the 37 living species of Felidae, the clouded leopard (Neofelis nebulosa) is generally classified as a monotypic genus basal to the Panthera lineage of great cats [1–5]. This secretive, mid-sized (16–23 kg) carnivore, now severely endangered, is traditionally subdivided into four southeast Asian subspecies (Figure 1A) [4–8]. We used molecular genetic methods to re-evaluate subspecies partitions and to quantify patterns of population genetic variation among 109 clouded leopards of known geographic origin (Figure 1A, Tables S1 and S2 in the Supplemental Data available online). We found strong phylogeographic monophyly and large genetic distances between N. n. nebulosa (mainland) and N. n. diardi (Borneo; n = 3 individuals) with mtDNA (771 bp), nuclear DNA (3100 bp), and 51 microsatellite loci. Thirty-six fixed mitochondrial and nuclear nucleotide differences and 20 microsatellite loci with nonoverlapping allele-size ranges distinguished N. n. nebulosa from N. n. diardi. Along with fixed subspecies-specific chromosomal differences, this degree of differentiation is equivalent to, or greater than, comparable measures among five recognized Panthera species (lion, tiger, leopard, jaguar, and snow leopard). These distinctions increase the urgency of clouded leopard conservation efforts, and if affirmed by morphological analysis and wider sampling of N. n. diardi in Borneo and Sumatra, would support reclassification of N. n. diardi as a new species (Neofelis diardi). PMID:17141620

Climate regulation of fire emissions and deforestation in equatorial Asia

PubMed Central

van der Werf, G. R.; Dempewolf, J.; Trigg, S. N.; Randerson, J. T.; Kasibhatla, P. S.; Giglio, L.; Murdiyarso, D.; Peters, W.; Morton, D. C.; Collatz, G. J.; Dolman, A. J.; DeFries, R. S.

2008-01-01

Drainage of peatlands and deforestation have led to large-scale fires in equatorial Asia, affecting regional air quality and global concentrations of greenhouse gases. Here we used several sources of satellite data with biogeochemical and atmospheric modeling to better understand and constrain fire emissions from Indonesia, Malaysia, and Papua New Guinea during 2000–2006. We found that average fire emissions from this region [128 ± 51 (1σ) Tg carbon (C) year−1, T = 1012] were comparable to fossil fuel emissions. In Borneo, carbon emissions from fires were highly variable, fluxes during the moderate 2006 El Niño more than 30 times greater than those during the 2000 La Niña (and with a 2000–2006 mean of 74 ± 33 Tg C yr−1). Higher rates of forest loss and larger areas of peatland becoming vulnerable to fire in drought years caused a strong nonlinear relation between drought and fire emissions in southern Borneo. Fire emissions from Sumatra showed a positive linear trend, increasing at a rate of 8 Tg C year−2 (approximately doubling during 2000–2006). These results highlight the importance of including deforestation in future climate agreements. They also imply that land manager responses to expected shifts in tropical precipitation may critically determine the strength of climate–carbon cycle feedbacks during the 21st century. PMID:19075224

Tertiary stratigraphy and basin evolution, southern Sabah (Malaysian Borneo)

NASA Astrophysics Data System (ADS)

Balaguru, Allagu; Nichols, Gary

2004-08-01

New mapping and dating of strata in the southern part of the Central Sabah Basin in northern Borneo has made it possible to revise the lithostratigraphy and chronostratigraphy of the area. The recognition in the field of an Early Miocene regional unconformity, which may be equivalent to the Deep Regional Unconformity recognised offshore, has allowed the development of a stratigraphic framework of groups and formations, which correspond to stages in the sedimentary basin development of the area. Below the Early Miocene unconformity lies ophiolitic basement, which is overlain by an accretionary complex of Eocene age and a late Paleogene deep water succession which formed in a fore-arc basin. The late Paleogene deposits underwent syn-depositional deformation, including the development of extensive melanges, all of which can be demonstrated to lie below the unconformity in this area. Some localised limestone deposition occurred during a period of uplift and erosion in the Early Miocene, following which there was an influx of clastic sediments deposited in delta and pro-deltaic environments in the Middle Miocene. These deltaic to shallow marine deposits are now recognised as forming two coarsening-upward successions, mapped as the Tanjong and Kapilit Formations. The total thickness of these two formations in the Central Sabah Basin amounts to 6000 m, only half of the previous estimates, although the total stratigraphic thickness of Cenozoic clastic strata in Sabah may be more than 20,000 m.

Statistical analysis of trends in monthly precipitation at the Limbang River Basin, Sarawak (NW Borneo), Malaysia

NASA Astrophysics Data System (ADS)

Krishnan, M. V. Ninu; Prasanna, M. V.; Vijith, H.

2018-05-01

Effect of climate change in a region can be characterised by the analysis of rainfall trends. In the present research, monthly rainfall trends at Limbang River Basin (LRB) in Sarawak, Malaysia for a period of 45 years (1970-2015) were characterised through the non-parametric Mann-Kendall and Spearman's Rho tests and relative seasonality index. Statistically processed monthly rainfall of 12 well distributed rain gauging stations in LRB shows almost equal amount of rainfall in all months. Mann-Kendall and Spearman's Rho tests revealed a specific pattern of rainfall trend with a definite boundary marked in the months of January and August with positive trends in all stations. Among the stations, Limbang DID, Long Napir and Ukong showed positive (increasing) trends in all months with a maximum increase of 4.06 mm/year (p = 0.01) in November. All other stations showed varying trends (both increasing and decreasing). Significant (p = 0.05) decreasing trend was noticed in Ulu Medalam and Setuan during September (- 1.67 and - 1.79 mm/year) and October (- 1.59 and - 1.68 mm/year) in Mann-Kendall and Spearman's Rho tests. Spatial pattern of monthly rainfall trends showed two clusters of increasing rainfalls (maximas) in upper and lower part of the river basin separated with a dominant decreasing rainfall corridor. The results indicate a generally increasing trend of rainfall in Sarawak, Borneo.

Characteristics and knowledge about HIV/AIDS and drug abuse associated with inmates education level within prison populations in Singkawang, West Borneo in 2006.

PubMed

Sigarlaki, Herke G

2008-07-01

to identify the characteristics and knowledge of inmates within prison population in Singkawang city about HIV/AIDS and drugs associated with their education level. a cross-sectional study with 240 respondents was conducted in Singkawang City, West Borneo. The subjects were inmates of prison population. They were interviewed by co-assistant doctors who completed the questionnaire forms about various aspects of knowledge about HIV/AIDS and drugs, including the application of standardized scales on subject characteristics. Data was prepared by using Microsoft Excel 2000 and all data were evaluated by univariate and bivariate analyses. The presentation will be shown in table. at the end of 2006, 91.25% respondents were male and mostly were Malay ethnic group. Moreover, 32.08% of them had formal educational background of Senior High School. Approximately 83.33% of respondents had discovered their status of HIV/AIDS by voluntary counseling and testing (VCT). Their level of knowledge about HIV/AIDS issue particularly that AIDS is caused by HIV was 90.42%. Approximately 48.33% respondents agreed that the risk factor for drug abuse was living with a family member who had taken up smoking and alcoholic consumption. our data indicate that higher education level has better contribution to the better knowledge about HIV/AIDS and drugs.

Continental crustal history in SE Asia: Insights from zircon geochronology

NASA Astrophysics Data System (ADS)

Sevastjanova, I.; Hall, R.; Gunawan, I.; Ferdian, F.; Decker, J.

2012-12-01

It is well known that SE Asia is underlain mostly by continental crust derived from Gondwana. However, there are still many uncertainties about the ages of protoliths, origin, arrival ages and history of different blocks, because much of the basement is unexposed. We have compiled previously published and new zircon U-Pb age and Hf isotope data from SE Asia. Our data set currently contains over 8400 U-Pb ages and over 600 Hf isotope analyses from sedimentary, metamorphic and igneous rocks and work is continuing to increase its size and the area covered. Zircons range in age from 3.4 Ga to near-zero. Archean zircons (>2.5 Ga) are rare in SE Asia and significant Archean populations (particularly zircons >2.8 Ga) are found only in East Java and the Sibumasu block of the Malay Peninsula. The presence of Archean zircons strongly suggests that the East Java and Sibumasu blocks were once situated near present-day Western Australia. Detrital Paleoproterozoic (ca. 1.9-1.8 Ga) zircons are abundant in many parts of SE Asia. In Sundaland (Malay Peninsula, Sumatra, West Java, Borneo) the most likely source for these zircons is the tin belt basement, but a north Australian source is more likely for eastern Indonesian samples. An early Mesoproterozoic (ca. 1.6-1.5 Ga) zircon population, particularly common in eastern Indonesia, is interpreted to be derived from central or northern Australia. Mesoproterozoic zircons, ca. 1.4 Ga, are common only on fragments that are now attached to or were previously part of the north Australian margin, such as the Bird's Head of New Guinea, Timor, Seram, Sulawesi and SW Borneo. Hf isotope characteristics of zircons from Seram are similar to those of zircons from eastern Australia. This supports the suggestion that Seram was part of the Australian margin. Late Meso- and early Neoproterozoic zircons (ca. 1.2-1.1 Ga, 900 Ma, and 600 Ma) are present, but not abundant, in SE Asia. Dominant Phanerozoic populations are Permian-Triassic, Cretaceous, and Cenozoic. All these populations are complex and suggest multiple episodes of magmatism for each. Permian-Triassic detrital zircons were derived from two distinct source areas, the SE Asian tin belt and eastern Indonesia (Banggai-Sula and West Papua). It is notable that in both these areas zircon ages show a gap in magmatism around 260-250 Ma. In West Papua, North Banda and Sulawesi, detrital Triassic zircons are present in many metamorphic rocks, suggesting Triassic or post-Triassic metamorphism in these areas, in rocks previously thought to be Paleozoic or older metamorphic basement. Cretaceous zircons are common in Sumatra, Borneo, Vietnam, Malaysia, Thailand, on the Sunda shelf, and in Sulawesi. They were produced during multiple magmatic events that are unlikely to have a common cause. Cretaceous zircons have also been found in all metamorphic rocks from SW Borneo previously suggested to be Palaeozoic or older. Cenozoic zircons were largely derived from subduction volcanism and are widely distributed, but are a relatively small proportion of the total data set, reflecting a combination of natural, sampling and analytical reasons. Zircon age data suggest that SE Asia records crustal growth mainly by re-assembly of continental fragments rather than by creation of significant new crust.

East Asia Summit: Steps toward Community to Prevent Great Power Hegemony and Implications for U.S. Policy

DTIC Science & Technology

2006-03-15

collection of information if it does not display a currently valid OMB control number. 1. REPORT DATE 15 MAR 2006 2. REPORT TYPE 3. DATES COVERED 4...eastward with the takeover of India and the establishment of English rule over the Malay Peninsula and parts of Borneo. While China was defeated by...attacks in Indonesia in October 2002 and 2004, the Severe Acute Respiratory Syndrome (SARS) scare of 2003, repeated outbreaks of Avian Flu, and the

A revision of the spirit loaches, genus Lepidocephalus (Cypriniformes, Cobitidae).

PubMed

Deein, Gridsada; Tangjitjaroen, Weerapongse; Page, Lawrence M

2014-03-17

Lepidocephalus has been assumed to include only two species and confined to peninsular Malaysia and Indonesia. However, based on records and collections reported herein, the genus contains five species and is most common in the Chao Phraya basin of Thailand. Large rivers seem to be the preferred habitat, and difficulty in collecting these rivers may account for the paucity of specimens in collections. The known range of these five species includes western and southern Borneo, Java, Sumatra, peninsular Malaysia, and central Thailand.

British Air Power in Peripheral Conflict, 1919-1976

DTIC Science & Technology

1989-10-01

Northwest Frontier of Mohn Pimlott, "The British Army: The Dhofar Campaign, 1970-1975," in Ian F.W. Beckett and John Pimlott (eds.), Armed Forces and...Malaya, Singapore, Borneo, and even the Phil - ippines!5 In December 1962, an Indonesian-backed revolt was staged by the "secret army" of Brunei r...BIBLIOGRAPHY 121 Pimlott, John. "The British Army: The Dhofar Campaign, 1970-1975," in Ian F.W. Beckett and John Pimlott (eds.), Armed Forces and

A fall land bird migration across the South China Sea from Indo-China to the Greater Sunda Islands

USGS Publications Warehouse

Ellis, D.H.; Kepler, A.K.; Kepler, C.B.

1994-01-01

We encountered 150 land birds representing 14 families along the cruise track of the Soviet Oceanographic Research Vessel AKADEMlK KOROLEV in the South China Sea. We saw most of these birds during a 3 -day period in a small area c. 350 km southeast of the southern tip of the Indo-China peninsula. These observations suggest that a significant land bird migration corridor crosses the South China Sea from Viet Nam to Borneo.

Space Shuttle radar investigations of Indonesia

NASA Technical Reports Server (NTRS)

Ford, J. P.; Sabins, F. F., Jr.

1986-01-01

A preliminary interpretation of structure and lithology from selected Shuttle Imaging Radar-B (SIR-B) images of Borneo, collected in October 1984, is presented. The SIR-B images, obtained at depression angles that ranged from 40 to 50 deg, were interpreted by using the approaches suggested by Sabins (1983). On the basis of radar signatures, six terrain categories; coastal and alluvial plains, and carbonate, clastic, volcanic, and melange, rocks, were defined in east, central, and south Kalimantan, and in the Malaysian state of Sarawak.

Sunrise view taken by the STS-109 crew

NASA Image and Video Library

2002-03-10

STS109-345-032 (1-12 March 2002) --- One of the astronauts aboard the Space Shuttle Columbia photographed this west-looking view featuring the profile of the atmosphere and the setting sun. The shuttle was located over the Java Sea to the south of Kalimantan (Borneo) in Indonesia when this image was acquired. Visible to the right of the setting sun are cloud tops from some thunderstorms. The sun's reflection (bright spot over the setting sun) can be seen off the upper layers of the earth's atmosphere.

The Relationship of Labor Pain, Medication Usage, and Length of Labor with Childbirth Preparation in Primigravidas.

DTIC Science & Technology

1992-01-01

of midwifery on the island of Borneo, according to legend, started when a husband and his pregnant wife were hunting food in the jungle. He came upon a...fully cemented the doctor- hospital-childbirth relationship (Tanzer & Block, 1972). The use of these drugs sometimes, instead of making the patient quiet...By the end of the 1960s, physicians were crying out to give less drugs during labor as these drugs were severely affecting the infants. Thus, the push

Impact of the 2015 wildfires on Malaysian air quality and exposure: a comparative study of observed and modeled data

NASA Astrophysics Data System (ADS)

Mead, M. I.; Castruccio, S.; Latif, M. T.; Nadzir, M. S. M.; Dominick, D.; Thota, A.; Crippa, P.

2018-04-01

In September and October 2015, Equatorial Asia experienced the most intense biomass burning episodes over the past two decades. These events, mostly enhanced by the extremely dry weather associated with the occurrence of strong El Niño conditions, resulted in the transnational transport of hazardous pollutants from the originating sources in Indonesian Borneo and Sumatra to the highly populated Malaysian Peninsula. Quantifying the population exposure form this event is a major challenge, and only two model-based studies have been performed to date, with limited evaluation against measurements. This manuscript presents a new data set of 49 monitoring stations across Peninsular Malaysia and Malaysian Borneo active during the 2015 haze event, and performs the first comparative study of PM10 (particulate matter with diameter < 10 µm) and carbon monoxide (CO) against the output of a state-of-the-art regional model (WRF-Chem). WRF-Chem presents high skills in describing the spatio-temporal patterns of both PM10 and CO and thus was applied to estimate the impact of the 2015 wildfires on population exposure. This study showed that more than 60% of the population living in the highly populated region of the Greater Klang Valley was systematically exposed to unhealthy/hazardous air quality conditions associated with the increased pollutant concentrations from wildfires and that almost 40% of the Malaysian population was on average exposed to PM10 concentrations higher than 100 µg m‑3 during September and October 2015.

Indonesian vegetation response to changes in rainfall seasonality over the past 25,000 years

NASA Astrophysics Data System (ADS)

Dubois, Nathalie; Oppo, Delia W.; Galy, Valier V.; Mohtadi, Mahyar; van der Kaars, Sander; Tierney, Jessica E.; Rosenthal, Yair; Eglinton, Timothy I.; Lückge, Andreas; Linsley, Braddock K.

2014-07-01

The hydrologic response to climate forcing in the Indo-Pacific warm pool region has varied spatially over the past 25,000 years. For example, drier conditions are inferred on Java and Borneo for the period following the end of the Last Glacial Maximum, whereas wetter conditions are reconstructed for northwest Australia. The response of vegetation to these past rainfall variations is poorly constrained. Using a suite of 30 surface marine sediment samples from throughout the Indo-Pacific warm pool, we demonstrate that today the stable isotopic composition of vascular plant fatty acids (δ13CFA) reflects the regional vegetation composition. This in turn is controlled by the seasonality of rainfall consistent with dry season water stress. Applying this proxy in a sediment core from offshore northeast Borneo, we show broadly similar vegetation cover during the Last Glacial Maximum and the Holocene, suggesting that, despite generally drier glacial conditions, there was no pronounced dry season. In contrast, δ13CFA and pollen data from a core off the coast of Sumba indicate an expansion of C4 herbs during the most recent glaciation, implying enhanced aridity and water stress during the dry season. Holocene vegetation trends are also consistent with a response to dry season water stress. We therefore conclude that vegetation in tropical monsoon regions is susceptible to increases in water stress arising from an enhanced seasonality of rainfall, as has occurred in past decades.

A new genus and species of cestode (Rhinebothriidea) from Mobula kuhlii (Rajiformes: Mobulidae) from Malaysian Borneo.

PubMed

Eyring, Kathryn L; Healy, Claire J; Reyda, Florian B

2012-06-01

The cestode fauna of the shortfin devilray, Mobula kuhlii (Müller & Henle, 1841) was examined for the first time. The work resulted in the discovery of a new genus and species of rhinebothriidean tapeworm. Crassuseptum pietrafacei, n. gen. n. sp. is erected here on the basis of its unique scolex and proglottid morphology. Histological sections and examination by light and scanning electron microscopy demonstrated that this new genus differs from all other rhinebothriidean genera in its possession of bothridia in which the proximal and distal sides are confluent, i.e., not separated by a rim of tissue, and in its possession of testes that extend to the posterior margin of the ovary. This new species is characterized in part by its possession of stalked, elongate bothridia lacking lateral constrictions, with 13-15 prominent transverse bothridial septa and 4 reduced transverse septa, craspedote proglottids, each with 2-3 layers of testes in cross section, and a vas deferens that joins the cirrus sac at its anterior margin. Histological and optical sections through bothridial septa revealed that the transverse septa are formed by septal muscles separate from bothridial radial musculature, extending from the anterior side to the posterior side of each septum. This is only the second species rhinebothriidean cestode reported from mobulids. This study adds to the number of new species and genera of elasmobranch cestodes discovered off of the island of Borneo.

Fire Distribution in Peninsular Malaysia, Sumatra and Borneo in 2015 with Special Emphasis on Peatland Fires.

PubMed

Miettinen, Jukka; Shi, Chenghua; Liew, Soo Chin

2017-10-01

In this paper, we analyze the spatio-temporal distribution of vegetation fires in Peninsular Malaysia, Sumatra, and Borneo in the severe El Niño year of 2015, concentrating on the distribution of fires between mineral soils and peatland areas, and between land cover types in peatland areas. The results reveal that 53% of all Moderate Resolution Imaging Spectroradiometer (MODIS) fire detections were recorded in peatlands that cover only 12% of the study area. However, fire occurrence in the peatland areas was highly dependent on land cover type. Pristine peat swamp forests (PSF) experienced only marginal fire activity (30 fire detections per 1000 km 2 ) compared to deforested undeveloped peatlands (831-915 fire detections per 1000 km 2 ). Our results also highlight the extreme fire vulnerability of the southern Sumatran and Bornean peatlands under strong El Niño conditions: 71% of all peatland hotspots were detected in the provinces of South Sumatra and Central Kalimantan, which contain 29% of peatlands in the study area. Degraded PSF and all deforested peatland land cover types, including managed areas, in the two provinces were severely affected, demonstrating how difficult it is to protect even managed drained agricultural areas from unwanted fires during dry periods. Our results thereby advocate rewetting and rehabilitation as the primary management option for highly fire prone degraded undeveloped peatland areas, whenever feasible, as a means to reduce fire risk during future dry episodes.

Mitochondrial phylogeny, taxonomy and biogeography of the silvered langur species group (Trachypithecus cristatus).

PubMed

Roos, Christian; Nadler, Tilo; Walter, Lutz

2008-05-01

With a distribution ranging from mainland Southeast Asia to the Sunda region, the silvered langur species group is the most widely distributed species complex of the genus Trachypithecus. However, the systematic classification of its members and the phylogenetic relationships among them are less understood, leading to different classification schemes and proposed distribution zones. To address these issues, we sequenced a 573 bp long fragment of the mitochondrial cytochrome b gene from 115 silvered langurs (68 individuals from known origin). According to our data, five monophyletic clades were detected, which refer to the five taxa auratus, cristatus, germaini, margarita and mauritius. The phylogenetic relationships among them are not well resolved, indicating a radiation-like splitting event, which was estimated to have occurred about 0.95-1.25 mya. Within T. cristatus, two major clades were detected, with one comprising specimens from Sumatra, Borneo and the Natuna archipelago, and the other solely individuals from the Malaysian peninsula. According to our findings, we propose to rank all five taxa as distinct species. While T. auratus, T. germaini, T. margarita and T. mauritius seem to be monotypic, T. cristatus should be split into two subspecies, with the Malaysian form being described as new form here. From a phylogeographic perspective, the species group most likely originated on Java. During the early Pleistocene, its range was expanded to the Malaysian peninsula and to the Southeast Asian mainland. Later on, the Malaysian form colonised further regions of the Sunda region, including Sumatra, Borneo and the Natuna archipelago.

Recycling of phenolic compounds in Borneo's tropical peat swamp forests.

PubMed

Yule, Catherine M; Lim, Yau Yan; Lim, Tse Yuen

2018-02-07

Tropical peat swamp forests (TPSF) are globally significant carbon stores, sequestering carbon mainly as phenolic polymers and phenolic compounds (particularly as lignin and its derivatives) in peat layers, in plants, and in the acidic blackwaters. Previous studies show that TPSF plants have particularly high levels of phenolic compounds which inhibit the decomposition of organic matter and thus promote peat accumulation. The studies of phenolic compounds are thus crucial to further understand how TPSF function with respect to carbon sequestration. Here we present a study of cycling of phenolic compounds in five forests in Borneo differing in flooding and acidity, leaching of phenolic compounds from senescent Macaranga pruinosa leaves, and absorption of phenolics by M. pruinosa seedlings. The results of the study show that total phenolic content (TPC) in soil and leaves of three species of Macaranga were highest in TPSF followed by freshwater swamp forest and flooded limestone forest, then dry land sites. Highest TPC values were associated with acidity (in TPSF) and waterlogging (in flooded forests). Moreover, phenolic compounds are rapidly leached from fallen senescent leaves, and could be reabsorbed by tree roots and converted into more complex phenolics within the leaves. Extreme conditions-waterlogging and acidity-may facilitate uptake and synthesis of protective phenolic compounds which are essential for impeded decomposition of organic matter in TPSF. Conversely, the ongoing drainage and degradation of TPSF, particularly for conversion to oil palm plantations, reverses the conditions necessary for peat accretion and carbon sequestration.

Fire Distribution in Peninsular Malaysia, Sumatra and Borneo in 2015 with Special Emphasis on Peatland Fires

NASA Astrophysics Data System (ADS)

Miettinen, Jukka; Shi, Chenghua; Liew, Soo Chin

2017-10-01

In this paper, we analyze the spatio-temporal distribution of vegetation fires in Peninsular Malaysia, Sumatra, and Borneo in the severe El Niño year of 2015, concentrating on the distribution of fires between mineral soils and peatland areas, and between land cover types in peatland areas. The results reveal that 53% of all Moderate Resolution Imaging Spectroradiometer (MODIS) fire detections were recorded in peatlands that cover only 12% of the study area. However, fire occurrence in the peatland areas was highly dependent on land cover type. Pristine peat swamp forests (PSF) experienced only marginal fire activity (30 fire detections per 1000 km2) compared to deforested undeveloped peatlands (831-915 fire detections per 1000 km2). Our results also highlight the extreme fire vulnerability of the southern Sumatran and Bornean peatlands under strong El Niño conditions: 71% of all peatland hotspots were detected in the provinces of South Sumatra and Central Kalimantan, which contain 29% of peatlands in the study area. Degraded PSF and all deforested peatland land cover types, including managed areas, in the two provinces were severely affected, demonstrating how difficult it is to protect even managed drained agricultural areas from unwanted fires during dry periods. Our results thereby advocate rewetting and rehabilitation as the primary management option for highly fire prone degraded undeveloped peatland areas, whenever feasible, as a means to reduce fire risk during future dry episodes.

Land Use Change Around Nature Reserves: Implications for Sustaining Biodiversity

NASA Astrophysics Data System (ADS)

Hansen, A. J.; Defries, R.; Curran, L.; Liu, J.; Reid, R.; Turner, B.

2004-12-01

The effects of land use change outside of reserves on biodiversity within reserves is not well studied. This paper draws on research from Yellowstone, East Africa, Yucatan, Borneo, and Wolong, China to examine land use effects on nature reserves. Objectives are: quantify rates of change in land use around reserves; examine consequences for biodiversity within the context of specific ecological mechanisms; and draw implications for regional management. Within each of the study regions, semi-natural habitats around nature reserves have been converted to agricultural, rural residential, or urban land uses. Rates vary from 0.2-0.4 %/yr in Yucatan, to 9.5 %/yr in Borneo. Such land use changes may be important because nature reserves are often parts of larger ecosystems that are defined by flows in energy, materials, and organisms. Land use outside of reserves may disrupt these flows and alter biodiversity within reserves. Ecological mechanisms that connect biodiversity to these land use changes include habitat size, ecological flows, crucial habitats, and edge effects. For example, the effective size of the East African study area has been reduced by 45% by human activities. Based on the species area relationship, this reduction in habitat area will lead to a loss of 14% of bird and mammal species. A major conclusion is that the viability of nature reserves can best be ensured by managing them in the context of the surrounding region. Knowledge of the ecological mechanisms by which land use influences nature reserves provides design criteria for this regional management.

Mesoscale modeling of smoke transport over the Southeast Asian Maritime Continent: Interplay of sea breeze, trade wind, typhoon, and topography

NASA Astrophysics Data System (ADS)

Wang, Jun; Ge, Cui; Yang, Zhifeng; Hyer, Edward J.; Reid, Jeffrey S.; Chew, Boon-Ning; Mahmud, Mastura; Zhang, Yongxin; Zhang, Meigen

2013-03-01

The online-coupled Weather Research and Forecasting model with Chemistry (WRFchem) is used to simulate the transport of smoke particles over the Southeast Asian Maritime Continent during September-October 2006. In this period, dry conditions associated with the moderate El Niño event caused the largest regional biomass burning outbreak since 1997. Smoke emission in WRFchem is specified according to the Fire Locating and Modeling of Burning Emissions (FLAMBE) database derived from Moderate Resolution Imaging Spectroradiometer (MODIS) fire products. The modeled smoke transport pathway is found to be consistent with the MODIS true color images and measured mass concentration of surface PM10 (particulate matter with diameter less than 10 μm). The interplay of sea/land breezes, typhoons and storms over the subtropical western Pacific Ocean, trade winds, and topographic effects, can be clearly seen in the model simulation. The most severe smoke events in 1-5 October 2006 are found to be associated with the meteorological responses to the typhoon Xangsane (#18) over the western subtropical Pacific Ocean, which moved smoke from Sumatra eastward in the lower troposphere (below 700 hPa), forming smoke layers mixed with and above the boundary layer clouds over Borneo. In contrast, the second largest week-long smoke transport event of 15-18 October 2006 was associated with the seasonal monsoonal transition period, during which smoke plumes were wide spread over the 5°S-5°N zone as a result of (a) the near surface divergence coupled with the 700 hPa bifurcation of wind (flowing both to the west and to the east), and (b) the near-surface southeasterly and easterly winds along the equator transporting smoke from Borneo to Sumatra and Peninsular Malaysia. Analysis of data from the Cloud-Aerosol Lidar with Orthogonal Polarisation (CALIOP) shows that smoke particles in October 2006 were primarily located within 3.5 km above the surface. Smoke particles contributed roughly half of the total aerosol extinction retrieved by CALIOP. Results suggest that the smoke injection height in the model should be set lower than the 2-5 km commonly used in transport simulations; smoke release at ~ 0.8 km instead of 2 km above surface gives a consistently better match to CALIOP observations. Numerical experiments further show that the Titiwangsa Mountains in Malaysia Peninsula and Tama Abu Mountains in Borneo have significant impacts on smoke transport and the surface air quality in the vicinity.

Recent Shift of Deforestation to High Elevation Areas from 2001 to 2013 in Borneo Detected by MODIS Data

NASA Astrophysics Data System (ADS)

Nagai, S.; Suzuki, R.

2015-12-01

The biomass of tropical forests sequestrates tons of carbon and plays an important role in the global carbon cycle regulating the climate. Also its high biodiversity ecosystems bring us many valuable resources and cultural and educational ecosystem services. However, large areas of the tropical forest are deforested and converted to oil palm or acacia plantation for the economic benefit of the local society mainly in Southeast Asia. Monitoring of the tropical forest from satellites provides us the information about the deforestation for decadal time period over extensive areas and enables us to discuss it from a scientific point of view. The purpose of this study is to reveal the interannual change and recent trend of deforestation in relation to the land elevation for decadal time period over Borneo by using data from Moderate Resolution Imaging Spectroradiometer (MODIS). We acquired the atmospherically corrected and cloud free Terra-MODIS and Aqua-MODIS daily data products (MOD09GA and MYD09GA; collection 5) from 2001 to 2013 for Borneo. We extracted the pixel values in the 500m surface reflectance bands 1 (red) and 4 (green) products and calculated the green-red vegetation index (GRVI), (band 4 - band 1) / (band 4 + band 1), at a daily time step. GRVI shows a positive value for the land prevailed by green vegetation, while it shows a negative value for the land prevailed by no-green components such as bare land. As for the elevation data, ASTER Global Digital Elevation Model (GDEM) which has 33.3m spatial resolution was employed. The original resolution was resampled to the grid system of MODIS data (i.e. 500m resolution). Pixels which had a negative GRVI ratio more than 80 % (termed as "no green pixel") in each year were regarded as the land characterized by no vegetation, and mapped the distribution for each year. Throughout the 13 years, no green pixels mainly found over the coastal low land below 20m of the elevation and the area was almost constant (around 3000km2). It is considered the deforestation for the plantations generally occurred over the easy access low lands. By contrast, it was obvious that no green pixels extended their distribution up to high elevation (20 to 120m) areas mainly after 2006. This trend suggests recent development of the plantation has been extended to relatively inland and high elevation areas.

Genetic Diversity, Natural Selection and Haplotype Grouping of Plasmodium knowlesi Gamma Protein Region II (PkγRII): Comparison with the Duffy Binding Protein (PkDBPαRII)

PubMed Central

Fong, Mun Yik; Rashdi, Sarah A. A.; Yusof, Ruhani; Lau, Yee Ling

2016-01-01

Background Plasmodium knowlesi is a simian malaria parasite that has been reported to cause malaria in humans in Southeast Asia. This parasite invades the erythrocytes of humans and of its natural host, the macaque Macaca fascicularis, via interaction between the Duffy binding protein region II (PkDBPαRII) and the Duffy antigen receptor on the host erythrocytes. In contrast, the P. knowlesi gamma protein region II (PkγRII) is not involved in the invasion of P. knowlesi into humans. PkγRII, however, mediates the invasion of P. knowlesi into the erythrocytes of M. mulata, a non-natural host of P. knowlesi via a hitherto unknown receptor. The haplotypes of PkDBPαRII in P. knowlesi isolates from Peninsular Malaysia and North Borneo have been shown to be genetically distinct and geographically clustered. Also, the PkDBPαRII was observed to be undergoing purifying (negative) selection. The present study aimed to determine whether similar phenomena occur in PkγRII. Methods Blood samples from 78 knowlesi malaria patients were used. Forty-eight of the samples were from Peninsular Malaysia, and 30 were from Malaysia Borneo. The genomic DNA of the samples was extracted and used as template for the PCR amplification of the PkγRII. The PCR product was cloned and sequenced. The sequences obtained were analysed for genetic diversity and natural selection using MEGA6 and DnaSP (version 5.10.00) programmes. Genetic differentiation between the PkγRII of Peninsular Malaysia and North Borneo isolates was estimated using the Wright’s FST fixation index in DnaSP (version 5.10.00). Haplotype analysis was carried out using the Median-Joining approach in NETWORK (version 4.6.1.3). Results A total of 78 PkγRII sequences was obtained. Comparative analysis showed that the PkγRII have similar range of haplotype (Hd) and nucleotide diversity (π) with that of PkDBPαRII. Other similarities between PkγRII and PkDBPαRII include undergoing purifying (negative) selection, geographical clustering of haplotypes, and high inter-population genetic differentiation (FST index). The main differences between PkγRII and PkDBPαRII include length polymorphism and no departure from neutrality (as measured by Tajima’s D statistics) in the PkγRII. Conclusion Despite the biological difference between PkγRII and PkDBPαRII, both generally have similar genetic diversity level, natural selection, geographical haplotype clustering and inter-population genetic differentiation index. PMID:27195821

Effect of Wave Boundary Layer on Sea-to-Air Dimethylsulfide Transfer Velocity During Typhoon Passage

DTIC Science & Technology

2006-09-01

straits are shallow except Luzon Strait whose maximum depth is 1800 m. The elliptical shaped central deep basin is 1900 km along its major axis...the east, Borneo to the southeast, and Indonesia to the south, a total area of 3.5·106 km2. Its southern border is 3° S between South Sumatra and...averaging 100 m deep on the continental Sunda shelf and over 5000 m in the Philippine basin ; and its unusual monsoon weather patterns of reversing

A new montane species of Philautus (Amphibia: Anura: Rhacophoridae) from western Sarawak, Malaysia, Borneo.

PubMed

Dehling, J Maximilian; Dehling, Matthias

2013-01-01

A new species of Philautus is described from western Sarawak. The new species was collected in lower montane forest in two national parks in Sarawak and recorded from another park. It differs from its congeners by a unique combination of morphological characters, including a long, acuminate snout, long legs, and comparatively extensive toe webbing. The advertisement call of the new species differs from all calls of other species that have been analyzed so far. Comparison of the mitochondrial 16S rRNA gene sequence corroborates its distinct specific status.

Dimorphic cycle in Candida citri sp. nov., a novel yeast species isolated from rotting fruit in Borneo.

PubMed

Sipiczki, Matthias

2011-03-01

Five dimorphic yeast strains were isolated from rotting lime fruits in Borneo. The sequences of the D1/D2 domains of the 26S rRNA genes, the internal transcribed spacer (ITS) chromosomal regions and the 18S rRNA genes were identical in the isolates and differed from the corresponding sequences of all known yeast species. Based on the sequence differences (12-15% in the D1/D2 domain) from the closest relatives and the different pattern of taxonomic traits, the new isolates are assigned the status of a new species, for which the name Candida citri sp. nov. is proposed. Its type strain is 11-469(T) , which has been deposited in Centralbureau voor Schimmelcultures (Utrecht, the Netherlands) as CBS 11858(T) , Culture Collection of Yeasts (Bratislava, Slovakia) as CCY 29-181-1(T) and the National Collection of Agricultural and Industrial Microorganisms (Budapest, Hungary) as NCAIM Y.01978(T) . MycoBank number: MB 519100. The GenBank accession numbers for nucleotide sequences of its D1/D2 domain, ITS and 18S regions are HM803241, HM803242 and HM803243, respectively. Candida citri produces invasive mycelium composed of true septate hyphae that grow towards nutrient-rich parts of the medium and develop large vacuoles at the nongrowing ends of their cells. The hyphae produce blastoconidia, which can establish satellite yeast colonies in the invaded solid substrate. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Projection of spatial and temporal changes of rainfall in Sarawak of Borneo Island using statistical downscaling of CMIP5 models

NASA Astrophysics Data System (ADS)

Sa'adi, Zulfaqar; Shahid, Shamsuddin; Chung, Eun-Sung; Ismail, Tarmizi bin

2017-11-01

This study assesses the possible changes in rainfall patterns of Sarawak in Borneo Island due to climate change through statistical downscaling of General Circulation Models (GCM) projections. Available in-situ observed rainfall data were used to downscale the future rainfall from ensembles of 20 GCMs of Coupled Model Intercomparison Project phase 5 (CMIP5) for four Representative Concentration Pathways (RCP) scenarios, namely, RCP2.6, RCP4.5, RCP6.0 and RCP8.5. Model Output Statistics (MOS) based downscaling models were developed using two data mining approaches known as Random Forest (RF) and Support Vector Machine (SVM). The SVM was found to downscale all GCMs with normalized mean square error (NMSE) of 48.2-75.2 and skill score (SS) of 0.94-0.98 during validation. The results show that the future projection of the annual rainfalls is increasing and decreasing on the region-based and catchment-based basis due to the influence of the monsoon season affecting the coast of Sarawak. The ensemble mean of GCMs projections reveals the increased and decreased mean of annual precipitations at 33 stations with the rate of 0.1% to 19.6% and one station with the rate of - 7.9% to - 3.1%, respectively under all RCP scenarios. The remaining 15 stations showed inconsistency neither increasing nor decreasing at the rate of - 5.6% to 5.2%, but mainly showing a trend of decreasing rainfall during the first period (2010-2039) followed by increasing rainfall for the period of 2070-2099.

Magnetic signature of river sediments drained into the southern and eastern part of the South China Sea (Malay Peninsula, Sumatra, Borneo, Luzon and Taiwan)

NASA Astrophysics Data System (ADS)

Kissel, Catherine; Liu, Zhifei; Li, Jinhua; Wandres, Camille

2017-01-01

Magnetic properties of 22 river samples collected in the Malay Peninsula, Sumatra, Borneo, Luzon and Taiwan have been investigated in order to magnetically characterize the sediments drained and deposited into the South China Sea. The geological formations as well as the present climatic conditions are different from one region to another. Laboratory analyses include low-field magnetic susceptibility, anhysteretic (ARM) and isothermal (IRM) remanent magnetizations acquisition and decay, back-field acquisition, thermal demagnetization of three-axes IRM, hysteresis cycles and low-temperature magnetic measurements. The magnetic properties indicate that the sediments are a mixture of hematite, magnetite and pyrrhotite in different proportions depending on the region. Combined with results previously reported for the three main Asian rivers (Pearl, Red and Mekong rivers), the new data indicate that, in general, hematite-rich sediments are delivered to the southern basin of the South China Sea while the northern basin is fed with magnetite and pyrrhotite-rich sediments. In addition to this general picture, some variability is observed at smaller geographic scales. Indeed, the magnetic assemblages are closely related to the geology of the various catchments while clay minerals, previously reported for the same samples, are more representative of the climatic conditions under which the parent rocks have evolved within each catchment. The magnetic fraction, now well characterized in the main river sediments drained into the South China Sea, can be used as a tracer for changes in precipitation on land and in oceanic water mass transport and exchange.

Development of jacket platform tsunami risk rating system in waters offshore North Borneo

NASA Astrophysics Data System (ADS)

Lee, H. E.; Liew, M. S.; Mardi, N. H.; Na, K. L.; Toloue, Iraj; Wong, S. K.

2016-09-01

This work details the simulation of tsunami waves generated by seaquakes in the Manila Trench and their effect on fixed oil and gas jacket platforms in waters offshore North Borneo. For this study, a four-leg living quarter jacket platform located in a water depth of 63m is modelled in SACS v5.3. Malaysia has traditionally been perceived to be safe from the hazards of earthquakes and tsunamis. Local design practices tend to neglect tsunami waves and include no such provisions. In 2004, a 9.3 M w seaquake occurred off the northwest coast of Aceh, which generated tsunami waves that caused destruction in Malaysia totalling US 25 million and 68 deaths. This event prompted an awareness of the need to study the reliability of fixed offshore platforms scattered throughout Malaysian waters. In this paper, we present a review of research on the seismicity of the Manila Trench, which is perceived to be high risk for Southeast Asia. From the tsunami numerical model TUNA-M2, we extract computer-simulated tsunami waves at prescribed grid points in the vicinity of the platforms in the region. Using wave heights as input, we simulate the tsunami using SACS v5.3 structural analysis software of offshore platforms, which is widely accepted by the industry. We employ the nonlinear solitary wave theory in our tsunami loading calculations for the platforms, and formulate a platform-specific risk quantification system. We then perform an intensive structural sensitivity analysis and derive a corresponding platform-specific risk rating model.

Three new species of Merizocotyle Cerfontaine, 1894 (Monogenea: Monocotylidae) from the nasal tissues of dasyatid rays collected off Malaysian and Indonesian Borneo.

PubMed

Chisholm, Leslie A; Whittington, Ian D

2012-06-01

Three new species of Merizocotyle Cerfontaine, 1894 (Monogenea: Monocotylidae) are described from the nasal tissues of stingrays collected off Borneo. Merizocotyle macrostrobus n. sp. is described from the dwarf whipray Himantura walga (Müller & Henle) collected in shallow waters off Sematan, Sarawak, Malaysia. This species can be distinguished from the other members of the genus by the morphology of the sclerotised male copulatory organ, which is long with many twists and loops. The vaginae of this species are also long and looped. Merizocotyle papillae n. sp. is described from the roughnose stingray Pastinachus solocirostris Last, Manjaji & Yearsley collected off Sematan and Mukah, Sarawak, Malaysia. It is distinguished from the other species of Merizocotyle by the morphology of the male copulatory organ, which is a sclerotised tube that expands slightly and then tapers at the distal end, and by the presence of papillae on the dorsal edge of the haptor. Merizocotyle rhadinopeos n. sp. is described from the whitenose whip ray Himantura uarnacoides (Bleeker) collected off Manggar, East Kalimantan, Indonesia. It can be differentiated by the male copulatory organ, which is a short, narrow, curved, sclerotised tube tapering distally, and the path of the ovary, which runs anteriorly to the base of the oötype. We also provide details of new host and/or locality records for M. australensis (Beverley-Burton & Williams, 1989) Chisholm, Wheeler & Beverley-Burton, 1995, M. icopae Beverley-Burton & Williams, 1989 and M. pseudodasybatis (Hargis, 1955) Chisholm, Wheeler & Beverley-Burton, 1995.

Ambient measurements of OH and HO2 radicals and the OH reactivity in and above the Borneo Rainforest

NASA Astrophysics Data System (ADS)

Heard, D. E.; Whalley, L. K.; Furneaux, K. L.; Edwards, P.; Commane, R.; Goddard, A.; Ingham, T.; Evans, M.

2008-12-01

Ground-based measurements of OH, HO2 and the OH reactivity have been made as part of the OP3 project that took place at the Bukit Atur Global Atmospheric Watch station in the Danum Valley forest conservation area in Sabah, Borneo in 2008. The project consisted of two intensive measurement periods in April and July. Aircraft measurements of OH and HO2 above the ground site were also performed and preliminary data will be presented. The OH and HO2 radicals exhibit a distinct diurnal profile, broadly following the j(O1D) profile that was measured simultaneously (daytime [OH] ~ 2 - 5 x 106 molecule cm-3, [HO2] ~ 1 - 1.5 x 108 molecule cm-3). NO, which peaked in the early morning hours ([NO] ~ 100 pptV) and isoprene, which peaked in the afternoon ([isoprene] ~ 2 - 5 ppbV) were found to influence the OH profile. Both OH and HO2 persisted into the night and were detectable even after j(O1D) had fallen to zero (nighttime [OH] ~ 2.5 x 105 molecule cm-3, [HO2] ~ 2 x 107 molecule cm-3), suggesting night-time radical sources. The OH reactivity tracked the isoprene concentration, exhibiting maximum reactivity just after midday when isoprene levels peaked. Zero dimensional models, using a variety of mechanisms, have been used to predict the [OH], [HO2] and the OH reactivity that were observed. The models, constrained with measured OH sources and sinks, are used to test the hypothesis that OH is recycled from isoprene oxidation in this low NOx environment

Organic sedimentation and genesis of petroleum in Mahakam Delta, Borneo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Combaz, A.; de Matharel, M.

1978-09-01

The delta on the eastern coast of Kalimantan, Borneo, is a typical sedimentary-delta model for hydrocarbon accumulation. Because of a remarkable sedimentary continuity since the middle Miocene, three superimposed paleodeltas separated by two transgressive sequences are preserved. Several oil fields have been discovered in the area. Geochemical and microscopic studies of the organic material indicate a history of biochemical and catagenetic degradation, migration of the hydrocarbons generated, and their concentration in the sandstone reservoirs. The organic material in the source rocks generally is of continental and vegetal origin. The oils studied are highly paraffinic, increase in gravity with depth, andmore » have a very low sulfur content and a CPI close to 1. The oils of the two fields of Bekapai and Handil do not differ significantly, except that the degree of maturation of oil seems lower in Handil than in Bekapai. The characteristics of the source-rock chloroform extract are basically the same as those of the oils but the CPI is greater, between C25 and C29, and there is a higher proportion of alkanes in the extracts. The isoprenoid spectra, however, are very similar in both families of products. As a result it is concluded that the accumulations are probably not from source rocks in the vicinity of the reservoirs but originate at greater depths. The hydrocarbons could have migrated vertically about 3,000 m, chiefly along the faults present at both Bekapai and Handil. This process also could provoke the segregation of oils of increasing gravity with depth.« less

Identification and characterization of microsatellite loci in two socially complex old world tropical babblers (Family Timaliidae).

PubMed

Kaiser, Sara A; Danner, J E; Bergner, Laura; Fleischer, Robert C

2015-11-24

Although the highest diversity of birds occurs in tropical regions, little is known about the genetic mating systems of most tropical species. We describe microsatellite markers isolated in the chestnut-crested yuhina (Staphida everetti), endemic to the island of Borneo, and the grey-throated babbler (Stachyris nigriceps), widely distributed across Southeast Asia. Both species belong to the avian family Timaliidae and are highly social, putatively cooperatively breeding birds in which helpers attend the nests of members of their social group. We obtained DNA from individuals in social groups breeding in Kinabalu Park, Malaysian Borneo. We used a shotgun sequencing approach and 454-technology to identify 36 microsatellite loci in the yuhina and 40 in the babbler. We tested 13 primer pairs in yuhinas and 20 in babblers and characterized eight polymorphic loci in 20 unrelated female yuhinas and 21 unrelated female babblers. Polymorphism at the yuhina loci ranged from 3 to 9 alleles, observed heterozygosities from 0.58 to 1.00, and expected heterozygosities from 0.64 to 0.81. Polymorphism at the babbler loci ranged from 3 to 12 alleles, observed heterozygosities from 0.14 to 0.90 and expected heterozygosities from 0.14 to 0.87. One locus in the yuhina deviated significantly from Hardy-Weinberg equilibrium. We detected nonrandom allele associations between two pairs of microsatellite loci in each species. Microsatellite markers will be used to describe the genetic mating system of these socially complex species and to measure genetic parentage and relatedness within social groups.

Engineers in the mist: The solar in the jungle project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thornton, J.P.; Thornton, S.

This article describes the design and installation of a photovoltaic power supply for a remote orangutan research station in the rain forest in Borneo. The unique needs of the station, including the problems created by noisy equipment and the transport of fuel offering potential for severe damage, are discussed, along with the design of the system, a community based system for the camp that would not only compensate for shadowing loss due to a chain link cage and meet the daily load, but would provide up to 20 days of energy if loads were managed properly.

Chigger (Acarina:Trombiculidae) surveys of the west coast beaches of Sabah and Sarawak.

PubMed

Dohany, A L; Phang, O W; Rapmund, G

1977-06-01

Leptotrombidium (Leptotrombidium) arenicola Traub, a vector of scrub typhus, had previously been found to occur in the coastal vegetation behind the edge of open sand along the beaches of Peninsular Malaysia. Surveys of the west coast beaches of Sabah and Sarawak were conducted to determine if this species occurs in similar habitat in East Malaysia on the island of Borneo. Leptotrombidium (L.) arenicola was not collected from the eighteen sites studied. Of the 11,982 mite larvae collected, 55 per cent were L.(L.) deliense (Walch), a well-known, widespread vector of scrub typhus.

Tree traits and canopy closure data from an experiment with 34 planted species native to Sabah, Borneo

PubMed Central

Gustafsson, Malin; Gustafsson, Lena; Alloysius, David; Falck, Jan; Yap, Sauwai; Karlsson, Anders; Ilstedt, Ulrik

2016-01-01

The data presented in this paper is supporting the research article “Life history traits predict the response to increased light among 33 tropical rainforest tree species” [3]. We show basic growth and survival data collected over the 6 years duration of the experiment, as well as data from traits inventories covering 12 tree traits collected prior to and after a canopy reduction treatment in 2013. Further, we also include canopy closure and forest light environment data from measurements with hemispherical photographs before and after the treatment. PMID:26900591

Two LNG plants slated for Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parker, R.F.; Phannenstiel, L.L.

1975-06-09

Two large LNG plants are in the planning stage for Indonesia. The Badak field in East Kalimantan, Borneo, will have a 450 million ft/sup 3//day plant with a projected 20-y life. Gas will be liquefied in a 2-train plant employing the propane-MCR process, then stored in double-wall tanks having a total capacity of 2.4 million bbl. Arun field in North Sumatra will have an LNG plant capable of liquefying 1.2 billion ft/sup 3//day of gas in 6 trains, also using the propane-MCR process. LNG storage capacity at Arun will total 3.2 million bbl.

The forest for the trees: tuberculosis control efforts in west Kalimantan.

PubMed

Shoeb, Marwa; Lopez de Castilla, Diego; Pottinger, Paul

2011-01-01

Alam Sehat Lestari (ASRI), an Indonesian-American, non-profit organization located on the border of Gunung Palung National Park in west Kalimantan on the island of Borneo, is linking the delivery of health care to the conservation of natural resources. The clinic's experience shows that an unconventional 'forests-for-health care' incentive programme can provide a powerful way to break the cycle that links poverty, poor health and environmental destruction around the park. However, the challenges of preventing, diagnosing and treating tuberculosis in this setting remain considerable and success will still depend upon a multilateral collaborative approach.

Sangkulirang Mangkalihat: The Earliest Prehistoric Rock-Art in the World

NASA Astrophysics Data System (ADS)

Imam Gozali Sumantri, Dirga; Soeria Atmadja, Dicky A. S.; Setiawan, Pindi

2018-05-01

Borneo island, a part of Sundaland - a great mainland in South East Asia thousands of years ago - is the largest island in Indonesian Archipelago. In the middle-eastern of East Borneo, lies a peninsula karst region named Sangkulirang Mangkalihat. The region's biodiversity contains many species of flora and fauna which are part of karst ecosystem. Surprisingly, thousands prehistoric rock art paintings and engraving were found here, spread over 48 inland caves in seven different karst mountain areas. The rock arts are painted on the ceiling, wall, and hollow of the cave depends on the meaning. They illustrate forms such as spiritual images (zoomorphic and antropomorphic) for sacred spiritual meaning, and social phenomenon images (tools and weapons) for description of daily life. From all those rock-arts, hand paintings are the most common elements appeared. Compared to other paintings, these are the only negative images using different techniques. Radiocarbon dating indicated that the rock-arts at Tewet Cave in Sangkulirang Mangkalihat is 40,000 BP. It is much earlier compared to Lascaux Cave (35,400 BP) and Chauvet Cave (32,000) in France which were previously known as the earliest one in the world. Rock arts and some archeological findings also indicate the migration of Austronesian People. During the migration, Borneo's climate and land cover were changing from time to time. Continental climate occurred when all Sundaland was still dry (40,000-21,000 BP), followed by tropical savanna climate and archipelagic climate (12,000-7.000 BP), and then Tropical Rainforest consecutively (1,000 BP). Correlatively, geological interpretations from such areas indicate land cover changes. These changes effected Austronesian ways of living, e.g. from hunting to fishing, and were depicted clearly on their paintings. Today, - as observed from time series satellite images - industrial activities such as karst exploitation for cement production and land clearing for palm oil plantation are threatening Sangkulirang Mangkalihat as they are approaching this particular areas. Efforts were conducted to preserve these particular sites, from establishing local regulations to a great step to propose it as one of UNESCO's World Cultural Heritage. To disseminate its importance as the world's earliest known rock arts, a particular map should be designed. The map should be able to describe multiple aspects regarding these sites, i.e. its location and position among other world rock arts, detail locations in the sites, climate and geomorphological changes occurred and its effects to these rock arts, its correlation to prehistoric migration, and threats faced today from industrial activities. An integrated, multiscale representation of such geospatial informations is considered.

Plant DNA barcodes and assessment of phylogenetic community structure of a tropical mixed dipterocarp forest in Brunei Darussalam (Borneo)

PubMed Central

Abu Salim, Kamariah; Chase, Mark W.; Dexter, Kyle G.; Pennington, R. Toby; Tan, Sylvester; Kaye, Maria Ellen; Samuel, Rosabelle

2017-01-01

DNA barcoding is a fast and reliable tool to assess and monitor biodiversity and, via community phylogenetics, to investigate ecological and evolutionary processes that may be responsible for the community structure of forests. In this study, DNA barcodes for the two widely used plastid coding regions rbcL and matK are used to contribute to identification of morphologically undetermined individuals, as well as to investigate phylogenetic structure of tree communities in 70 subplots (10 × 10m) of a 25-ha forest-dynamics plot in Brunei (Borneo, Southeast Asia). The combined matrix (rbcL + matK) comprised 555 haplotypes (from ≥154 genera, 68 families and 25 orders sensu APG, Angiosperm Phylogeny Group, 2016), making a substantial contribution to tree barcode sequences from Southeast Asia. Barcode sequences were used to reconstruct phylogenetic relationships using maximum likelihood, both with and without constraining the topology of taxonomic orders to match that proposed by the Angiosperm Phylogeny Group. A third phylogenetic tree was reconstructed using the program Phylomatic to investigate the influence of phylogenetic resolution on results. Detection of non-random patterns of community assembly was determined by net relatedness index (NRI) and nearest taxon index (NTI). In most cases, community assembly was either random or phylogenetically clustered, which likely indicates the importance to community structure of habitat filtering based on phylogenetically correlated traits in determining community structure. Different phylogenetic trees gave similar overall results, but the Phylomatic tree produced greater variation across plots for NRI and NTI values, presumably due to noise introduced by using an unresolved phylogenetic tree. Our results suggest that using a DNA barcode tree has benefits over the traditionally used Phylomatic approach by increasing precision and accuracy and allowing the incorporation of taxonomically unidentified individuals into analyses. PMID:29049301

Oxygenated volatile organic carbon in the western Pacific convective center: ocean cycling, air-sea gas exchange and atmospheric transport

NASA Astrophysics Data System (ADS)

Schlundt, Cathleen; Tegtmeier, Susann; Lennartz, Sinikka T.; Bracher, Astrid; Cheah, Wee; Krüger, Kirstin; Quack, Birgit; Marandino, Christa A.

2017-09-01

A suite of oxygenated volatile organic compounds (OVOCs - acetaldehyde, acetone, propanal, butanal and butanone) were measured concurrently in the surface water and atmosphere of the South China Sea and Sulu Sea in November 2011. A strong correlation was observed between all OVOC concentrations in the surface seawater along the entire cruise track, except for acetaldehyde, suggesting similar sources and sinks in the surface ocean. Additionally, several phytoplankton groups, such as haptophytes or pelagophytes, were also correlated to all OVOCs, indicating that phytoplankton may be an important source of marine OVOCs in the South China and Sulu seas. Humic- and protein-like fluorescent dissolved organic matter (FDOM) components seemed to be additional precursors for butanone and acetaldehyde. The measurement-inferred OVOC fluxes generally showed an uptake of atmospheric OVOCs by the ocean for all gases, except for butanal. A few important exceptions were found along the Borneo coast, where OVOC fluxes from the ocean to the atmosphere were inferred. The atmospheric OVOC mixing ratios over the northern coast of Borneo were relatively high compared with literature values, suggesting that this coastal region is a local hotspot for atmospheric OVOCs. The calculated amount of OVOCs entrained into the ocean seemed to be an important source of OVOCs to the surface ocean. When the fluxes were out of the ocean, marine OVOCs were found to be enough to control the locally measured OVOC distribution in the atmosphere. Based on our model calculations, at least 0.4 ppb of marine-derived acetone and butanone can reach the upper troposphere, where they may have an important influence on hydrogen oxide radical formation over the western Pacific Ocean.

Tides and Their Dynamics over the Sunda Shelf of the Southern South China Sea

PubMed Central

Ooi, See Hai; Abu Samah, Azizan; Akbari, Abolghasem

2016-01-01

A three-dimensional Regional Ocean Modelling System is used to study the tidal characteristics and their dynamics in the Sunda Shelf of the southern South China Sea. In this model, the outer domain is set with a 25 km resolution and the inner one, with a 9 km resolution. Calculations are performed on the inner domain. The model is forced at the sea surface by climatological monthly mean wind stress, freshwater (evaporation minus precipitation), and heat fluxes. Momentum and tracers (such as temperature and salinity) are prescribed in addition to the tidal heights and currents extracted from the Oregon State University TOPEX/Poseidon Global Inverse Solution (TPXO7.2) at the open boundaries. The results are validated against observed tidal amplitudes and phases at 19 locations. Results show that the mean average power energy spectrum (in unit m2/s/cph) for diurnal tides at the southern end of the East Coast of Peninsular Malaysia is approximately 43% greater than that in the East Malaysia region located in northern Borneo. In contrast, for the region of northern Borneo the semidiurnal power energy spectrum is approximately 25% greater than that in the East Coast of Peninsular Malaysia. This implies that diurnal tides are dominant along the East Coast of Peninsular Malaysia while both diurnal and semidiurnal tides dominate almost equally in coastal East Malaysia. Furthermore, the diurnal tidal energy flux is found to be 60% greater than that of the semidiurnal tides in the southern South China Sea. Based on these model analyses, the significant tidal mixing frontal areas are located primarily off Sarawak coast as indicated by high chlorophyll-a concentrations in the area. PMID:27622552

Contribution of pitcher fragrance and fluid viscosity to high prey diversity in a Nepenthes carnivorous plant from Borneo.

PubMed

Giusto, Bruno Di; Grosbois, Vladimir; Fargeas, Elodie; Marshall, David J; Gaume, Laurence

2008-03-01

Mechanisms that improve prey richness in carnivorous plants may involve three crucial phases of trapping:attraction, capture and retention. Nepenthes rafflesiana var. typica is an insectivorous pitcher plant that is widespread in northern Borneo. It exhibits ontogenetic pitcher dimorphism with the upper pitchers trapping more flying prey than the lower pitchers. While this difference in prey composition has been ascribed to differences in attraction,the contribution of capture and retention has been overlooked. This study focused on distinguishing between the prey trapping mechanisms, and assessing their relative contribution to prey diversity. Arthropod richness and diversity of both visitors and prey in the two types of pitchers were analysed to quantify the relative contribution of attraction to prey trapping. Rate of insect visits to the different pitcher parts and the presence or absence of a sweet fragrance was recorded to clarify the origin and mechanism of attraction. The mechanism of retention was studied by insect bioassays and measurements of fluid viscosity. Nepenthes rafflesiana was found to trap a broader prey spectrum than that previously described for any Nepenthes species,with the upper pitchers attracting and trapping a greater quantity and diversity of prey items than the lower pitchers. Capture efficiency was low compared with attraction or retention efficiency. Fragrance of the peristome,or nectar rim,accounted mainly for the observed non-specific, better prey attraction by the upper pitchers, while the retentive properties of the viscous fluid in these upper pitchers arguably explains the species richness of their flying prey. The pitchers of N. rafflesiana are therefore more than simple pitfall traps and the digestive fluid plays an important yet unsuspected role in the ecological success of the species.

Tooth wear in three ethnic groups in Sabah (northern Borneo).

PubMed

Milosevic, A; Lo, M S

1996-12-01

The prevalence and associated aetiologies of tooth wear were investigated in three ethnic groups in Sabah (Northern Borneo) using the Tooth Wear Index (TWI). The number of surfaces with enamel wear only, dentine exposed for less than a third or dentine exposed for more than a third were categorised into the TW minimal, moderate or severe respectively. A structured questionnaire was used to elicit medical/dental history, oral hygiene practices, satisfaction with body image, diet and other personal habits/details. The sample comprised of a self selected sample of 148 dental hospital attenders; 47 (32 per cent) each of ethnic Chinese and Malay and 54 (36 per cent) of ethnic Kadazan, matched for age and with a similar number of scoreable teeth per subject. Dentine exposure within the total sample was a common finding (95 per cent TW with moderate, 41 per cent TW severe). The Kadazan group had significantly (P < 0.05) more surfaces with severe tooth wear than the Chinese or Malay. Tobacco chewing was positively associated (rho = +0.4, P < 0.05) with both moderate and severe tooth wear, as was the habit of crushing/eating bones. Neither carbonated beverages or fresh fruit intake were associated with tooth wear, but their frequency of consumption was low. The buccal and occlusal surfaces of the posterior teeth were the most severely worn. Generally, wear was greater in the upper anterior sextant compared to the lower anterior sextant, with the exception of the lower incisal edges in the Kadazan group. Tooth wear into dentine was a common occurrence, especially among the Kadazan subjects and least among the Chinese subjects. The aetiological factors associated with this tooth wear are different to those encountered in Western cultures.

Rising floodwaters: mapping impacts and perceptions of flooding in Indonesian Borneo

NASA Astrophysics Data System (ADS)

Wells, Jessie A.; Wilson, Kerrie A.; Abram, Nicola K.; Nunn, Malcolm; Gaveau, David L. A.; Runting, Rebecca K.; Tarniati, Nina; Mengersen, Kerrie L.; Meijaard, Erik

2016-06-01

The roles of forest and wetland ecosystems in regulating flooding have drawn increasing attention in the contexts of climate change adaptation and disaster risk reduction. However, data on floods are scarce in many of the countries where people are most exposed and vulnerable to their impacts. Here, our separate analyses of village interview surveys (364 villages) and news archives (16 sources) show that floods have major impacts on lives and livelihoods in Indonesian Borneo, and flooding risks are associated with features of the local climate and landscape, particularly land uses that have seen rapid expansions over the past 30 years. In contrast with government assessments, we find that flooding is far more widespread, and that frequent, local, events can have large cumulative impacts. Over three years, local news agencies reported floods that affected 868 settlements, 966 times (including 89 in urban areas), inundated at least 197 000 houses, and displaced more than 776 000 people, possibly as many as 1.5 million (i.e. 5%-10% of the total population). Spatial analyses based on surveys in 364 villages show that flood frequency is associated with land use in catchment areas, including forest cover and condition, and the area of wetlands, mines (open-cut coal or gold mines), and oil palm. The probability that floods have become more frequent over the past 30 years was higher for villages closer to mines, and in watersheds with more extensive oil palm, but lower in watersheds with greater cover of selectively-logged or intact forests. We demonstrate that in data-poor regions, multiple sources of information can be integrated to gain insights into the hydrological services provided by forest and wetland ecosystems, and motivate more comprehensive assessment of flooding risks and options for ecosystem-based adaptation.

South to south learning in great ape conservation.

PubMed

Schoneveld-de Lange, Nicolien; Meijaard, Erik; Löhr, Ansje

2016-06-01

Despite evidence that killing of Bornean Orangutan (Pongo pygmaeus) in South-East Asia is a major threat to the species, few researchers and non-governmental conservationists have addressed it in management and research, and there is virtually no implementation of anti-killing strategies. In large parts of the Congo Basin, Central Africa, instead, illegal killing of great apes is acknowledged to be their largest threat, and many conservation strategies have been used to reduce killing pressure. However, since these strategies have not been subject to systematic and comprehensive review, it remains unclear which of them have been successful and why. Knowledge of the success, failure, and practices of common conservation strategies to manage great ape killing is critical to ensure adaptive conservation management in the Congo Basin. Understanding the Congo context also facilitates simultaneously highlighting great ape killing in Borneo and suggesting solutions to manage orangutan killing. Here, we compile and analyze the available literature on great ape conservation strategies for reducing killing rates in the Congo Basin. Through a systematic literature review of 198 publications, we find that the most widely employed conservation strategies in the Congo Basin are legislation and law enforcement, protected area management, community-based conservation, alternatives to bushmeat consumption and trade, ecotourism, education, and capacity building. Despite lack of rigorous post-intervention evaluation of conservation impact, we derive several recommendations for addressing the orangutan killing issue in Borneo. A critical lesson, widely applicable to developing countries for conservationists and not limited to Congo Basin realities, is the need for rigorous post-intervention evaluations compared to pre-intervention baselines and over appropriate time frames. Am. J. Primatol. 78:669-678, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages

PubMed Central

Waheed, Zarinah; van Mil, Harald G. J.; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W.

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park. PMID:26719987

Effects of land use on surface–atmosphere exchanges of trace gases and energy in Borneo: comparing fluxes over oil palm plantations and a rainforest

PubMed Central

Fowler, David; Nemitz, Eiko; Misztal, Pawel; Di Marco, Chiara; Skiba, Ute; Ryder, James; Helfter, Carole; Cape, J. Neil; Owen, Sue; Dorsey, James; Gallagher, Martin W.; Coyle, Mhairi; Phillips, Gavin; Davison, Brian; Langford, Ben; MacKenzie, Rob; Muller, Jennifer; Siong, Jambery; Dari-Salisburgo, Cesare; Di Carlo, Piero; Aruffo, Eleonora; Giammaria, Franco; Pyle, John A.; Hewitt, C. Nicholas

2011-01-01

This paper reports measurements of land–atmosphere fluxes of sensible and latent heat, momentum, CO2, volatile organic compounds (VOCs), NO, NO2, N2O and O3 over a 30 m high rainforest canopy and a 12 m high oil palm plantation in the same region of Sabah in Borneo between April and July 2008. The daytime maximum CO2 flux to the two canopies differs by approximately a factor of 2, 1200 mg C m−2 h−1 for the oil palm and 700 mg C m−2 h−1 for the rainforest, with the oil palm plantation showing a substantially greater quantum efficiency. Total VOC emissions are also larger over the oil palm than over the rainforest by a factor of 3. Emissions of isoprene from the oil palm canopy represented 80 per cent of the VOC emissions and exceeded those over the rainforest in similar light and temperature conditions by on average a factor of 5. Substantial emissions of estragole (1-allyl-4-methoxybenzene) from the oil palm plantation were detected and no trace of this VOC was detected in or above the rainforest. Deposition velocities for O3 to the rainforest were a factor of 2 larger than over oil palm. Emissions of nitrous oxide were larger from the soils of the oil palm plantation than from the soils of the rainforest by approximately 25 per cent. It is clear from the measurements that the large change in the species composition generated by replacing rainforest with oil palm leads to profound changes in the net exchange of most of the trace gases measured, and thus on the chemical composition of the boundary layer over these surfaces. PMID:22006962

Effects of land use on surface-atmosphere exchanges of trace gases and energy in Borneo: comparing fluxes over oil palm plantations and a rainforest.

PubMed

Fowler, David; Nemitz, Eiko; Misztal, Pawel; Di Marco, Chiara; Skiba, Ute; Ryder, James; Helfter, Carole; Cape, J Neil; Owen, Sue; Dorsey, James; Gallagher, Martin W; Coyle, Mhairi; Phillips, Gavin; Davison, Brian; Langford, Ben; MacKenzie, Rob; Muller, Jennifer; Siong, Jambery; Dari-Salisburgo, Cesare; Di Carlo, Piero; Aruffo, Eleonora; Giammaria, Franco; Pyle, John A; Hewitt, C Nicholas

2011-11-27

This paper reports measurements of land-atmosphere fluxes of sensible and latent heat, momentum, CO(2), volatile organic compounds (VOCs), NO, NO(2), N(2)O and O(3) over a 30 m high rainforest canopy and a 12 m high oil palm plantation in the same region of Sabah in Borneo between April and July 2008. The daytime maximum CO(2) flux to the two canopies differs by approximately a factor of 2, 1200 mg C m(-2) h(-1) for the oil palm and 700 mg C m(-2) h(-1) for the rainforest, with the oil palm plantation showing a substantially greater quantum efficiency. Total VOC emissions are also larger over the oil palm than over the rainforest by a factor of 3. Emissions of isoprene from the oil palm canopy represented 80 per cent of the VOC emissions and exceeded those over the rainforest in similar light and temperature conditions by on average a factor of 5. Substantial emissions of estragole (1-allyl-4-methoxybenzene) from the oil palm plantation were detected and no trace of this VOC was detected in or above the rainforest. Deposition velocities for O(3) to the rainforest were a factor of 2 larger than over oil palm. Emissions of nitrous oxide were larger from the soils of the oil palm plantation than from the soils of the rainforest by approximately 25 per cent. It is clear from the measurements that the large change in the species composition generated by replacing rainforest with oil palm leads to profound changes in the net exchange of most of the trace gases measured, and thus on the chemical composition of the boundary layer over these surfaces.

Rapid replacement of riparian rainforest habitat and the impacts on the meandering dynamics of the Kinabatangan River, Borneo

NASA Astrophysics Data System (ADS)

Horton, Alexander J.; Constantine, José A.

2014-05-01

Meandering rivers are defined by their nature to migrate, remobilising floodplain sediment and constructing new surfaces for riparian vegetation to colonise. The presence of riparian vegetation has long been known to limit the ability of rivers to erode riverbanks, but it has remained unclear the principal means by which vegetation provides this function. As a result, most models that predict meandering behaviour do not fully incorporate vegetation, thereby limiting their utility where forest is rapidly replaced. The problem is particularly acute along the Kinabatangan River of Sabah in Malaysian Borneo, where oil palm plantations are replacing one of the oldest riparian rainforests on the planet. The area of Sabah has seen rapid and extensive land use change in the last 40 years, as virgin rainforest has been systematically cleared for logging, and to make way for oil palm plantations. In the 18 years from 1990 to 2008, Sabah lost half of its intact rainforest, which equates to more than 1.85 million hectares. Using Landsat imagery dating back to 1973, we report here the impacts of this rapid land-use change on rates of meander migration on a 280-km reach of the Kinabatangan River. The river planform has been remarkably stable throughout the time period of study, but individual meanders show a rapid response to large discharge events, migrating over an order of magnitude faster than nearby reaches. Rapidly migrating meanders generally occur along portions of floodplain that have been artificially cleared of riparian vegetation, potentially resulting in significant increases in sediment load and within-channel bar development. A field campaign is planned to investigate the mechanisms by which riparian vegetation effect meander migration in these tropical regions.

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo.

PubMed

Luke, Sarah H; Barclay, Holly; Bidin, Kawi; Chey, Vun Khen; Ewers, Robert M; Foster, William A; Nainar, Anand; Pfeifer, Marion; Reynolds, Glen; Turner, Edgar C; Walsh, Rory P D; Aldridge, David C

2017-06-01

Freshwaters provide valuable habitat and important ecosystem services but are threatened worldwide by habitat loss and degradation. In Southeast Asia, rainforest streams are particularly threatened by logging and conversion to oil palm, but we lack information on the impacts of this on freshwater environmental conditions, and the relative importance of catchment versus riparian-scale disturbance. We studied 16 streams in Sabah, Borneo, including old-growth forest, logged forest, and oil palm sites. We assessed forest quality in riparian zones and across the whole catchment and compared it with stream environmental conditions including water quality, structural complexity, and organic inputs. We found that streams with the highest riparian forest quality were nearly 4 °C cooler, over 20 cm deeper, had over 40% less sand, greater canopy cover, more stored leaf litter, and wider channels than oil palm streams with the lowest riparian forest quality. Other variables were significantly related to catchment-scale forest quality, with streams in the highest quality forest catchments having 40% more bedrock and 20 times more dead wood, along with higher phosphorus, and lower nitrate-N levels compared to streams with the lowest catchment-scale forest quality. Although riparian buffer strips went some way to protecting waterways, they did not maintain fully forest-like stream conditions. In addition, logged forest streams still showed signs of disturbance 10-15 years after selective logging. Our results suggest that maintenance and restoration of buffer strips can help to protect healthy freshwater ecosystems but logging practices and catchment-scale forest management also need to be considered.

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo

PubMed Central

Barclay, Holly; Bidin, Kawi; Chey, Vun Khen; Ewers, Robert M.; Foster, William A.; Nainar, Anand; Pfeifer, Marion; Reynolds, Glen; Turner, Edgar C.; Walsh, Rory P. D.; Aldridge, David C.

2017-01-01

Abstract Freshwaters provide valuable habitat and important ecosystem services but are threatened worldwide by habitat loss and degradation. In Southeast Asia, rainforest streams are particularly threatened by logging and conversion to oil palm, but we lack information on the impacts of this on freshwater environmental conditions, and the relative importance of catchment versus riparian‐scale disturbance. We studied 16 streams in Sabah, Borneo, including old‐growth forest, logged forest, and oil palm sites. We assessed forest quality in riparian zones and across the whole catchment and compared it with stream environmental conditions including water quality, structural complexity, and organic inputs. We found that streams with the highest riparian forest quality were nearly 4 °C cooler, over 20 cm deeper, had over 40% less sand, greater canopy cover, more stored leaf litter, and wider channels than oil palm streams with the lowest riparian forest quality. Other variables were significantly related to catchment‐scale forest quality, with streams in the highest quality forest catchments having 40% more bedrock and 20 times more dead wood, along with higher phosphorus, and lower nitrate‐N levels compared to streams with the lowest catchment‐scale forest quality. Although riparian buffer strips went some way to protecting waterways, they did not maintain fully forest‐like stream conditions. In addition, logged forest streams still showed signs of disturbance 10–15 years after selective logging. Our results suggest that maintenance and restoration of buffer strips can help to protect healthy freshwater ecosystems but logging practices and catchment‐scale forest management also need to be considered. PMID:28706573

Milankovitch cycles in an equatorial delta from the Miocene of Borneo

NASA Astrophysics Data System (ADS)

Marshall, Nathan; Zeeden, Christian; Hilgen, Frederik; Krijgsman, Wout

2017-08-01

The factors controlling sedimentary cyclicity in deltaic systems are a subject of intense debate, and more research, in different deltaic environments and time periods, is needed to better understand the possible mechanisms. Offshore and Pleistocene case studies are more common than proximal and more ancient, greenhouse-climate examples. Furthermore, many studies lack a (statistical) cyclostratigraphic element. The paleo-Mahakam delta of Eastern Kalimantan, Borneo developed during the globally warm middle Miocene, in an equatorial setting, making it of interest to comprehend cyclic sedimentation in a period of warmer yet rapidly changing climate. In this study, statistical analysis of lithological changes shows that regular sandstone/shale alternations occur in a distinct pattern of cycles with thicknesses of ∼90, ∼30, and ∼17 m. Using independent dating, these thicknesses translate into periods of about 100, 40, and 20 kyr, matching the known periods of Earth's orbital eccentricity, obliquity and precession. The obliquity dominance in the middle interval is markedly similar to that observed in the global marine isotope (benthic δ18O) and other cyclic proxy records for this time interval. Despite a mismatch in the number of 40 kyr cycles compared to the global record that can be plausibly linked to the major sea-level drop at ∼13.8 Ma and facies shifts, it appears that the proximal setting of the paleo-Mahakam's sedimentation was dominantly controlled by allogenic orbital forcing, probably as a consequence of glacioeustasy. In particular, the observed obliquity dominance at paleo-equatorial latitudes, as seen in other records, highlights the dominance of orbital forcing, and potentially glacioeustatic sea level change, during this crucial period of warmer climate.

A Triassic to Cretaceous Sundaland-Pacific subduction margin in West Sarawak, Borneo

NASA Astrophysics Data System (ADS)

Breitfeld, H. Tim; Hall, Robert; Galin, Thomson; Forster, Margaret A.; BouDagher-Fadel, Marcelle K.

2017-01-01

Metamorphic rocks in West Sarawak are poorly exposed and studied. They were previously assumed to be pre-Carboniferous basement but had never been dated. New 40Ar/39Ar ages from white mica in quartz-mica schists reveal metamorphism between c. 216 to 220 Ma. The metamorphic rocks are associated with Triassic acid and basic igneous rocks, which indicate widespread magmatism. New U-Pb dating of zircons from the Jagoi Granodiorite indicates Triassic magmatism at c. 208 Ma and c. 240 Ma. U-Pb dating of zircons from volcaniclastic sediments of the Sadong and Kuching Formations confirms contemporaneous volcanism. The magmatic activity is interpreted to represent a Triassic subduction margin in westernmost West Sarawak with sediments deposited in a forearc basin derived from the magmatic arc at the Sundaland-Pacific margin. West Sarawak and NW Kalimantan are underlain by continental crust that was already part of Sundaland or accreted to Sundaland in the Triassic. One metabasite sample, also previously assumed to be pre-Carboniferous basement, yielded Early Cretaceous 40Ar/39Ar ages. They are interpreted to indicate resumption of subduction which led to deposition of volcaniclastic sediments and widespread magmatism. U-Pb ages from detrital zircons in the Cretaceous Pedawan Formation are similar to those from the Schwaner granites of NW Kalimantan, and the Pedawan Formation is interpreted as part of a Cretaceous forearc basin containing material eroded from a magmatic arc that extended from Vietnam to west Borneo. The youngest U-Pb ages from zircons in a tuff layer from the uppermost part of the Pedawan Formation indicate that volcanic activity continued until c. 86 to 88 Ma when subduction terminated.

Impact of logging and forest conversion to oil palm plantations on soil bacterial communities in Borneo.

PubMed

Lee-Cruz, Larisa; Edwards, David P; Tripathi, Binu M; Adams, Jonathan M

2013-12-01

Tropical forests are being rapidly altered by logging and cleared for agriculture. Understanding the effects of these land use changes on soil bacteria, which constitute a large proportion of total biodiversity and perform important ecosystem functions, is a major conservation frontier. Here we studied the effects of logging history and forest conversion to oil palm plantations in Sabah, Borneo, on the soil bacterial community. We used paired-end Illumina sequencing of the 16S rRNA gene, V3 region, to compare the bacterial communities in primary, once-logged, and twice-logged forest and land converted to oil palm plantations. Bacteria were grouped into operational taxonomic units (OTUs) at the 97% similarity level, and OTU richness and local-scale α-diversity showed no difference between the various forest types and oil palm plantations. Focusing on the turnover of bacteria across space, true β-diversity was higher in oil palm plantation soil than in forest soil, whereas community dissimilarity-based metrics of β-diversity were only marginally different between habitats, suggesting that at large scales, oil palm plantation soil could have higher overall γ-diversity than forest soil, driven by a slightly more heterogeneous community across space. Clearance of primary and logged forest for oil palm plantations did, however, significantly impact the composition of soil bacterial communities, reflecting in part the loss of some forest bacteria, whereas primary and logged forests did not differ in composition. Overall, our results suggest that the soil bacteria of tropical forest are to some extent resilient or resistant to logging but that the impacts of forest conversion to oil palm plantations are more severe.

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages.

PubMed

Waheed, Zarinah; van Mil, Harald G J; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park.

The Composition of Organic Aerosols in Southeast Asia During The 2006 Haze Episode

NASA Astrophysics Data System (ADS)

Jun, H.; Zielinska, B.; Balasubramanian, R.

2007-12-01

The regional smoke haze in Southeast Asia is a recurring air pollution problem. Uncontrolled forest fires from land-clearing activities in Sumatra and Borneo, and to a lesser extent Malaysia, have occurred almost every dry season since the late 1990s. The smoke haze that took place in October 2006 shrouded an estimated 215,000 square miles of land on Indonesia's islands of Sumatra and Borneo, and persisted for several weeks. Satellite pictures showed numerous hotspots in both Sumatra and Kalimantan. The prevailing, South-Southwesterly, winds blew smoke from land and forest fires in central and south Sumatra to Singapore, affecting the regional air quality significantly and reducing atmospheric visibility. During this haze episode, we carried out an intensive field study in Singapore to characterize the composition of organic aerosols, which usually account for a large fraction of airborne particulate matter (PM). A total of 17 PM samples were collected while the hazy atmospheric conditions persisted in Singapore, and subjected to accelerated solvent extraction with dichloromethane and acetone. The extracted compounds were grouped into three major fractions (n-alkanes, polycyclic aromatic hydrocarbons, and polar organic compounds). More than 180 particulate-bound organic compounds were determined using gas chromatography/mass spectrometry (GC-MS). In order to investigate the origin of organic species, the carbon preference indexes as well as diagnostic ratios were used. The compositional differences of organic aerosols between the haze- and non- haze periods will be presented. The atmospheric implications of the composition of organic aerosols of biomass burning origin will be discussed. Keywords: smoke haze, organic aerosols, n-alkanes, polycyclic aromatic hydrocarbons, polar organic compounds

Collapsed Thunderstorm, Southwest Pacific Ocean

NASA Image and Video Library

1992-05-16

STS049-71-042 (8 May 1992) --- This photograph, taken from the Earth-orbiting Space Shuttle Endeavour, shows a collapsed thunderstorm in the southwestern Pacific Ocean. The clouds were pushed from this circular area of the ocean's surface by relatively cool air that spread downward and outward from a dying thunderstorm. Around the edges of the downdrafted air, new, though smaller, storms are developing. The photo was taken on May 8, 1992, between Borneo and the Philippine island of Mindoro. Two coral atolls can be seen near the center of the photograph. The crew members used a handheld Hasselblad camera, 250-mm lens, color film to expose the image.

Chemistry and mineralogy of garnet pyroxenites from Sabah, Malaysia

USGS Publications Warehouse

Morgan, B.A.

1974-01-01

Garnet pyroxenites and corundum-garnet amphibolites from the Dent peninsula of eastern Sabah (North Borneo) occur as blocks in a slump breccia deposit of late Miocene age. The earliest formed minerals include pyrope-almandine garnet, tschermakitic augite, pargasite, and rutile. Cumulate textures are present in two of the six specimens studied. The earlier fabric has been extensively brecciated and partly replaced by plagioclase, ilmenite, and a fibrous amphibole. The bulk composition and mineralogy of these rocks are similar to those of garnet pyroxenite lenses within ultramafic rocks. Estimated temperature and pressure for the origin of the Sabah garnet pyroxenites is 850??150?? C and 19??4 kbar. ?? 1974 Springer-Verlag.

Genetic analysis of captive proboscis monkeys.

PubMed

Ogata, Mitsuaki; Seino, Satoru

2015-01-01

Information on the genetic relationships of captive founders is important for captive population management. In this study, we investigated DNA polymorphisms of four microsatellite loci and the mitochondrial control region sequence of five proboscis monkeys residing in a Japanese zoo as captive founders, to clarify their genetic relationship. We found that two of the five monkeys appeared to be genetically related. Furthermore, the haplotypes of the mitochondrial control region of the five monkeys were well differentiated from the haplotypes previously reported from wild populations from the northern area of Borneo, indicating a greater amount of genetic diversity in proboscis monkeys than previously reported. © 2014 Wiley Periodicals, Inc.

Lowland forest loss in protected areas of Indonesian Borneo.

PubMed

Curran, L M; Trigg, S N; McDonald, A K; Astiani, D; Hardiono, Y M; Siregar, P; Caniago, I; Kasischke, E

2004-02-13

The ecology of Bornean rainforests is driven by El Niño-induced droughts that trigger synchronous fruiting among trees and bursts of faunal reproduction that sustain vertebrate populations. However, many of these species- and carbon-rich ecosystems have been destroyed by logging and conversion, which increasingly threaten protected areas. Our satellite, Geographic Information System, and field-based analyses show that from 1985 to 2001, Kalimantan's protected lowland forests declined by more than 56% (>29,000 square kilometers). Even uninhabited frontier parks are logged to supply international markets. "Protected" forests have become increasingly isolated and deforested and their buffer zones degraded. Preserving the ecological integrity of Kalimantan's rainforests requires immediate transnational management.

A study of amber and copal samples using FT-Raman spectroscopy

NASA Astrophysics Data System (ADS)

Brody, Rachel H.; Edwards, Howell G. M.; Pollard, A. Mark

2001-05-01

FT-Raman spectra were collected from fossil resins originating from a variety of geographical locations. The spectral profiles of most of the fossil resins could be related to modern resins containing diterpenoid components with predominantly labdane skeletons. The spectra collected from the fossil resin sample from Borneo differed from other fossil resins and was found to contain triterpenoid components. The differences in the spectral profile of fossil resins containing diterpenoid components are shown to relate to differences in level of maturation rather than geographical origin. FT-Raman spectra of fossil resins cannot be used to distinguish source although the degree of maturation can be used as an indicator to narrow the range of possible geographical origins.

Earth observations taken from Space Shuttle Columbia during STS-93 mission

NASA Image and Video Library

1999-07-25

STS093-708-062 (23-27 July 1999) --- The STS-93 astronauts took this picture of the Island of Borneo, which is divided among Indonesia, Malaysia and Brunei. The Rajang River meets the South China Sea in the northwestern portion of the Malaysian state of Sarawak. Smoke from both large and small fires is blowing north by the prevailing summer winds. Notice the contrast of dark colored rainforest with the lighter clearings where the largest fires are burning. According to NASA scientists studying the STS-93 photo collection, the sediment plumes along the coast are mostly shoreline erosional materials caught up in longshore currents. The Saribas River can be seen at the bottom.

A new genus and species of myrmecophilous brentid beetle (Coleoptera: Brentidae) inhabiting the myrmecophytic epiphytes in the Bornean rainforest canopy.

PubMed

Maruyama, Munetoshi; Bartolozzi, Luca; Inui, Yoko; Tanaka, Hiroshi O; Hyodo, Fujio; Shimizu-Kaya, Usun; Takematsu, Yoko; Hishi, Takuo; Itioka, Takao

2014-04-08

Pycnotarsobrentus inuiae Maruyama & Bartolozzi, gen. nov. and sp. nov. (Brentinae: Eremoxenini) is described from the Lambir Hills National Park, Borneo (Sarawak, Malaysia) based on specimens collected from Crematogaster difformis F. Smith, 1857 ant nests in the myrmecophytic epiphytic ferns Platycerium crustacea Copel. and Lecanopteris ridleyi H. Christ. A second species of Pycnotarsobrentus is known from Malaysia but is represented by only one female and consequently not yet described pending discovery of a male. Pycnotarsobrentus belongs to the tribe Eremoxenini and shares some character states with the African genus Pericordus Kolbe, 1883. No species of Eremoxenini with similar morphological modifications are known from the Oriental region.

Construction Costs and Physico-chemical Properties of the Assimilatory Organs of Nepenthes Species in Northern Borneo

PubMed Central

Osunkoya, Olusegun O.; Daud, Siti Dayanawati; Di-Giusto, Bruno; Wimmer, Franz L.; Holige, Thippeswamy M.

2007-01-01

Background and Aims Species of the Nepenthaceae family are under-represented in studies of leaf traits and the consequent view of mineral nutrition and limitation in carnivorous plants. This study is aimed to complement existing data on leaf traits of carnivorous plants. Methods Physico-chemical properties, including construction costs (CC), of the assimilatory organs (leaf and pitcher) of a guild of lowland Nepenthes species inhabiting heath and/or peat swamp forests of Brunei, Northern Borneo were determined. Key Results Stoichiometry analyses indicate that Nepenthes species are nitrogen limited. Most traits vary appreciably across species, but greater variations exist between the assimilatory organs. Organ mass per unit area, dry matter tissue concentration (density), nitrogen (N), phosphorus (P), carbon, heat of combustion (Hc) and CC values were higher in the leaf relative to the pitcher, while organ thickness, potassium (K) and ash showed the opposite trend. Cross-species correlations indicate that joint rather than individual consideration of the leaf and the pitcher give better predictive relationships between variables, signalling tight coupling and functional interdependence of the two assimilatory organs. Across species, mass-based CC did not vary with N or P, but increases significantly with tissue density, carbon and Hc, and decreases with K and ash contents. Area-based CC gave the same trends (though weaker in strength) in addition to a significant positive correlation with tissue mass per unit area. Conclusions The lower CC value for the pitcher is in agreement with the concept of low marginal cost for carnivory relative to conventional autotrophy. The poor explanatory power of N, P or N : P ratio with CC suggests that factors other than production of expensive photosynthetic machinery (which calls for a high N input), including concentrations of lignin, wax/lipids or osmoregulatory ions like K+, may give a better explanation of the CC variation across Nepenthes species. PMID:17452380

Hydrograph monitoring and analysis for sustainable karst water management in Nyadeng Spring, East Borneo

NASA Astrophysics Data System (ADS)

Widyastuti, M.; Fatchurohman, H.; Fathoni, W. A.; Hakim, A. A.; Haryono, E.

2018-04-01

Karst aquifer stores abundant water resources within its matrix, conduits, and intergranular pores. Karst aquifer plays an important role in providing water supply, especially in the areas nearby that commonly dry and lack of surface water resources. Karst spring hydrograph analysis is very fundamental step to–assess and determines the condition of the catchment area in karst terrain. Recession curve is believed to be the most stable part in single flood hydrograph that represents the aquifer characteristics. Nyadeng is one of the most significant karst springs that located in Merabu Karst Area, East Borneo. Villagers in Merabu highly depend on Nyadeng Spring for fulfilled their freshwater need. Hydrograph monitoring has been initiated for one year in Nyadeng Spring as a preliminary action for karst water management in Merabu. Water level data series obtained using automatic water level data logger and then correlated with manual discharge measurement to generate stage-discharge rating curve. The stage-discharge rating curve formula for Nyadeng Spring calculated as y = 0,0102e5,8547x with r2 value = 0.8759. From the combination of several single flood events, Master Recession Curve (MRC) was generated to determine flow regime as the main consideration for karstification degree calculation. From the MRC result, flow regimes formula determined as Qt = 3.2-0.001t + 1.2(1-0.012t)+1.6(1-0.035t) indicated that one sub-regime with laminar flow and two sub-regimes with turbulent flow existed. From the MRC formula, the degree of karstification in Nyadeng Spring classified at seventh scale (developed karstification of the aquifer) based on Malik’s karstification degree (2012). The degree of karstification in Nyadeng Spring indicates that the aquifer formed by large conduit channels, fissures, and macro fissures which are able to provide significant water sources that can be utilized for multi purposes. Therefore, it is concluded that spring hydrograph monitoring provide essential information in order to establish a careful water resources management actions.

Mesoscale Features and Cloud Organization on 10-12 December 1978 over the South China Sea.

NASA Astrophysics Data System (ADS)

Warner, Charles

1982-07-01

Aircraft data from Winter MONEX have been combined with other data to study mesoscale features, and organization of cumulus clouds, on 10-12 December 1978. A moderate cold surge in the northeasterly monsoon flow, toward cloudiness in an equatorial trough off Borneo, peaked on 11 December.Clouds in the northeasterly monsoon flow were similar to those in the trades, with variations in convective regime on length scales on the order of 100 km. Marked mid-tropospheric subsidence was accompanied by low-level divergence near 20°N. During 10 December, anvil clouds near Borneo expanded; cumulus congestus and cumulonimbus formed on the periphery of this area. The approach of the low-level northeasterlies to the area of anvils was marked by a diminution of subsidence, conditional instability, and a weak field of low-level convergence, with randomly organized cumulus of increasing height. A low-level easterly jet was found in this transition zone, downstream from cloudiness over the Philippines. South of Vietnam, a clear area was associated with low air temperatures, and not subsidence. Congestus and cumulonimbus clouds formed near the eastern coast of the Malay Peninsula.Cloud streets were seen from latitude 19°N to the Malaysian coast (with a break south of Vietnam). These clouds were confined below the level of an inflection point in the profile of winds normal to the street direction. Greatest spacings of streets occurred with greatest vertical shears of the cross-winds. Cloud number densities were more closely related to the instability of the vertical stratification than to any other parameter.Cross-wind organization of clouds occurred in circumstances of unstable, stratification and apparently of net ascent. Alignment of clouds was at an angle to the directions of both winds and vertical wind shears. It is inferred that when convergence was strong, deep clouds occurred along lines of convergence in the surface streamlines.

Carbon Stocks and Fluxes in Tropical Lowland Dipterocarp Rainforests in Sabah, Malaysian Borneo

PubMed Central

Saner, Philippe; Loh, Yen Yee; Ong, Robert C.; Hector, Andy

2012-01-01

Deforestation in the tropics is an important source of carbon C release to the atmosphere. To provide a sound scientific base for efforts taken to reduce emissions from deforestation and degradation (REDD+) good estimates of C stocks and fluxes are important. We present components of the C balance for selectively logged lowland tropical dipterocarp rainforest in the Malua Forest Reserve of Sabah, Malaysian Borneo. Total organic C in this area was 167.9 Mg C ha−1±3.8 (SD), including: Total aboveground (TAGC: 55%; 91.9 Mg C ha−1±2.9 SEM) and belowground carbon in trees (TBGC: 10%; 16.5 Mg C ha−1±0.5 SEM), deadwood (8%; 13.2 Mg C ha−1±3.5 SEM) and soil organic matter (SOM: 24%; 39.6 Mg C ha−1±0.9 SEM), understory vegetation (3%; 5.1 Mg C ha−1±1.7 SEM), standing litter (<1%; 0.7 Mg C ha−1±0.1 SEM) and fine root biomass (<1%; 0.9 Mg C ha−1±0.1 SEM). Fluxes included litterfall, a proxy for leaf net primary productivity (4.9 Mg C ha−1 yr−1±0.1 SEM), and soil respiration, a measure for heterotrophic ecosystem respiration (28.6 Mg C ha−1 yr−1±1.2 SEM). The missing estimates necessary to close the C balance are wood net primary productivity and autotrophic respiration. Twenty-two years after logging TAGC stocks were 28% lower compared to unlogged forest (128 Mg C ha−1±13.4 SEM); a combined weighted average mean reduction due to selective logging of −57.8 Mg C ha−1 (with 95% CI −75.5 to −40.2). Based on the findings we conclude that selective logging decreased the dipterocarp stock by 55–66%. Silvicultural treatments may have the potential to accelerate the recovery of dipterocarp C stocks to pre-logging levels. PMID:22235319

Identification of traditional medicinal plant extracts with novel anti-influenza activity.

PubMed

Rajasekaran, Dhivya; Palombo, Enzo A; Chia Yeo, Tiong; Lim Siok Ley, Diana; Lee Tu, Chu; Malherbe, Francois; Grollo, Lara

2013-01-01

The emergence of drug resistant variants of the influenza virus has led to a need to identify novel and effective antiviral agents. As an alternative to synthetic drugs, the consolidation of empirical knowledge with ethnopharmacological evidence of medicinal plants offers a novel platform for the development of antiviral drugs. The aim of this study was to identify plant extracts with proven activity against the influenza virus. Extracts of fifty medicinal plants, originating from the tropical rainforests of Borneo used as herbal medicines by traditional healers to treat flu-like symptoms, were tested against the H1N1 and H3N1 subtypes of the virus. In the initial phase, in vitro micro-inhibition assays along with cytotoxicity screening were performed on MDCK cells. Most plant extracts were found to be minimally cytotoxic, indicating that the compounds linked to an ethnomedical framework were relatively innocuous, and eleven crude extracts exhibited viral inhibition against both the strains. All extracts inhibited the enzymatic activity of viral neuraminidase and four extracts were also shown to act through the hemagglutination inhibition (HI) pathway. Moreover, the samples that acted through both HI and neuraminidase inhibition (NI) evidenced more than 90% reduction in virus adsorption and penetration, thereby indicating potent action in the early stages of viral replication. Concurrent studies involving Receptor Destroying Enzyme treatments of HI extracts indicated the presence of sialic acid-like component(s) that could be responsible for hemagglutination inhibition. The manifestation of both modes of viral inhibition in a single extract suggests that there may be a synergistic effect implicating more than one active component. Overall, our results provide substantive support for the use of Borneo traditional plants as promising sources of novel anti-influenza drug candidates. Furthermore, the pathways involving inhibition of hemagglutination could be a solution to the global occurrence of viral strains resistant to neuraminidase drugs.

Identification of Traditional Medicinal Plant Extracts with Novel Anti-Influenza Activity

PubMed Central

Rajasekaran, Dhivya; Palombo, Enzo A.; Chia Yeo, Tiong; Lim Siok Ley, Diana; Lee Tu, Chu; Malherbe, Francois; Grollo, Lara

2013-01-01

The emergence of drug resistant variants of the influenza virus has led to a need to identify novel and effective antiviral agents. As an alternative to synthetic drugs, the consolidation of empirical knowledge with ethnopharmacological evidence of medicinal plants offers a novel platform for the development of antiviral drugs. The aim of this study was to identify plant extracts with proven activity against the influenza virus. Extracts of fifty medicinal plants, originating from the tropical rainforests of Borneo used as herbal medicines by traditional healers to treat flu-like symptoms, were tested against the H1N1 and H3N1 subtypes of the virus. In the initial phase, in vitro micro-inhibition assays along with cytotoxicity screening were performed on MDCK cells. Most plant extracts were found to be minimally cytotoxic, indicating that the compounds linked to an ethnomedical framework were relatively innocuous, and eleven crude extracts exhibited viral inhibition against both the strains. All extracts inhibited the enzymatic activity of viral neuraminidase and four extracts were also shown to act through the hemagglutination inhibition (HI) pathway. Moreover, the samples that acted through both HI and neuraminidase inhibition (NI) evidenced more than 90% reduction in virus adsorption and penetration, thereby indicating potent action in the early stages of viral replication. Concurrent studies involving Receptor Destroying Enzyme treatments of HI extracts indicated the presence of sialic acid-like component(s) that could be responsible for hemagglutination inhibition. The manifestation of both modes of viral inhibition in a single extract suggests that there may be a synergistic effect implicating more than one active component. Overall, our results provide substantive support for the use of Borneo traditional plants as promising sources of novel anti-influenza drug candidates. Furthermore, the pathways involving inhibition of hemagglutination could be a solution to the global occurrence of viral strains resistant to neuraminidase drugs. PMID:24312177

Through the eyes of children: perceptions of environmental change in tropical forests.

PubMed

Pellier, Anne-Sophie; Wells, Jessie A; Abram, Nicola K; Gaveau, David; Meijaard, Erik

2014-01-01

This study seeks to understand children's perceptions of their present and future environments in the highly biodiverse and rapidly changing landscapes of Kalimantan, Indonesian Borneo. We analyzed drawings by children (target age 10-15 years) from 22 villages, which show how children perceive the present conditions of forests and wildlife surrounding their villages and how they expect conditions to change over the next 15 years. Analyses of picture elements and their relationships to current landscape variables indicate that children have a sophisticated understanding of their environment and how different environmental factors interact, either positively or negatively. Children appear to have landscape-dependent environmental perceptions, showing awareness of past environmental conditions and many aspects of recent trends, and translating these into predictions for future environmental conditions. The further removed their present landscape is from the originally forested one, the more environmental change they expect in the future, particularly declines in forest cover, rivers, animal diversity and increases in temperature and natural disasters. This suggests that loss of past perceptions and associated "shifting environmental baselines" do not feature strongly among children on Borneo, at least not for the perceptions we investigated here. Our findings that children have negative expectations of their future environmental conditions have important political implications. More than other generations, children have a stake in ensuring that future environmental conditions support their long-term well-being. Understanding what drives environmental views among children, and how they consider trade-offs between economic development and social and environmental change, should inform optimal policies on land use. Our study illuminates part of the complex interplay between perceptions of land cover and land use change. Capturing the views of children through artistic expressions provides a potentially powerful tool to influence public and political opinions, as well as a valuable approach for developing localized education and nature conservation programs.

Sex Distribution of Paper Mulberry (Broussonetia papyrifera) in the Pacific

PubMed Central

Peñailillo, Johany; Olivares, Gabriela; Moncada, Ximena; Payacán, Claudia; Chang, Chi-Shan; Chung, Kuo-Fang; Matthews, Peter J.; Seelenfreund, Andrea; Seelenfreund, Daniela

2016-01-01

Background Paper mulberry (Broussonetia papyrifera (L.) L'Hér. ex Vent) is a dioecious tree native to East Asia and mainland Southeast-Asia, introduced prehistorically to Polynesia as a source of bark fiber by Austronesian-speaking voyagers. In Oceania, trees are coppiced and harvested for production of bark-cloth, so flowering is generally unknown. A survey of botanical records of paper mulberry revealed a distributional disjunction: the tree is apparently absent in Borneo and the Philippines. A subsequent study of chloroplast haplotypes linked paper mulberry of Remote Oceania directly to a population in southern Taiwan, distinct from known populations in mainland Southeast-Asia. Methodology We describe the optimization and use of a DNA marker designed to identify sex in paper mulberry. We used this marker to determine the sex distribution in selected localities across Asia, Near and Remote Oceania. We also characterized all samples using the ribosomal internal transcribed spacer sequence (ITS) in order to relate results to a previous survey of ITS diversity. Results In Near and Remote Oceania, contemporary paper mulberry plants are all female with the exception of Hawaii, where plants of both sexes are found. In its natural range in Asia, male and female plants are found, as expected. Male plants in Hawaii display an East Asian ITS genotype, consistent with modern introduction, while females in Remote Oceania share a distinctive variant. Conclusions Most paper mulberry plants now present in the Pacific appear to be descended from female clones introduced prehistorically. In Hawaii, the presence of male and female plants is thought to reflect a dual origin, one a prehistoric female introduction and the other a modern male introduction by Japanese/Chinese immigrants. If only female clones were dispersed from a source-region in Taiwan, this may explain the absence of botanical records and breeding populations in the Philippines and Borneo, and Remote Oceania. PMID:27529483

Quantity and Configuration of Available Elephant Habitat and Related Conservation Concerns in the Lower Kinabatangan Floodplain of Sabah, Malaysia

PubMed Central

Estes, Jason G.; Othman, Nurzhafarina; Ismail, Sulaiman; Ancrenaz, Marc; Goossens, Benoit; Ambu, Laurentius N.; Estes, Anna B.; Palmiotto, Peter A.

2012-01-01

The approximately 300 (298, 95% CI: 152–581) elephants in the Lower Kinabatangan Managed Elephant Range in Sabah, Malaysian Borneo are a priority sub-population for Borneo's total elephant population (2,040, 95% CI: 1,184–3,652). Habitat loss and human-elephant conflict are recognized as the major threats to Bornean elephant survival. In the Kinabatangan region, human settlements and agricultural development for oil palm drive an intense fragmentation process. Electric fences guard against elephant crop raiding but also remove access to suitable habitat patches. We conducted expert opinion-based least-cost analyses, to model the quantity and configuration of available suitable elephant habitat in the Lower Kinabatangan, and called this the Elephant Habitat Linkage. At 184 km2, our estimate of available habitat is 54% smaller than the estimate used in the State's Elephant Action Plan for the Lower Kinabatangan Managed Elephant Range (400 km2). During high flood levels, available habitat is reduced to only 61 km2. As a consequence, short-term elephant densities are likely to surge during floods to 4.83 km−2 (95% CI: 2.46–9.41), among the highest estimated for forest-dwelling elephants in Asia or Africa. During severe floods, the configuration of remaining elephant habitat and the surge in elephant density may put two villages at elevated risk of human-elephant conflict. Lower Kinabatangan elephants are vulnerable to the natural disturbance regime of the river due to their limited dispersal options. Twenty bottlenecks less than one km wide throughout the Elephant Habitat Linkage, have the potential to further reduce access to suitable habitat. Rebuilding landscape connectivity to isolated habitat patches and to the North Kinabatangan Managed Elephant Range (less than 35 km inland) are conservation priorities that would increase the quantity of available habitat, and may work as a mechanism to allow population release, lower elephant density, reduce human-elephant conflict, and enable genetic mixing. PMID:23071499

Present-day stress field of Southeast Asia

NASA Astrophysics Data System (ADS)

Tingay, Mark; Morley, Chris; King, Rosalind; Hillis, Richard; Coblentz, David; Hall, Robert

2010-02-01

It is now well established that ridge push forces provide a major control on the plate-scale stress field in most of the Earth's tectonic plates. However, the Sunda plate that comprises much of Southeast Asia is one of only two plates not bounded by a major spreading centre and thus provides an opportunity to evaluate other forces that control the intraplate stress field. The Cenozoic tectonic evolution of the Sunda plate is usually considered to be controlled by escape tectonics associated with India-Eurasia collision. However, the Sunda plate is bounded by a poorly understood and complex range of convergent and strike-slip zones and little is known about the effect of these other plate boundaries on the intraplate stress field in the region. We compile the first extensive stress dataset for Southeast Asia, containing 275 A-D quality (177 A-C) horizontal stress orientations, consisting of 72 stress indicators from earthquakes (located mostly on the periphery of the plate), 202 stress indicators from breakouts and drilling-induced fractures and one hydraulic fracture test within 14 provinces in the plate interior. This data reveals that a variable stress pattern exists throughout Southeast Asia that is largely inconsistent with the Sunda plate's approximately ESE absolute motion direction. The present-day maximum horizontal stress in Thailand, Vietnam and the Malay Basin is predominately north-south, consistent with the radiating stress patterns arising from the eastern Himalayan syntaxis. However, the present-day maximum horizontal stress is primarily oriented NW-SE in Borneo, a direction that may reflect plate-boundary forces or topographic stresses exerted by the central Borneo highlands. Furthermore, the South and Central Sumatra Basins exhibit a NE-SW maximum horizontal stress direction that is perpendicular to the Indo-Australian subduction front. Hence, the plate-scale stress field in Southeast Asia appears to be controlled by a combination of Himalayan orogeny-related deformation, forces related to subduction (primarily trench suction and collision) and intraplate sources of stress such as topography and basin geometry.

Population density of red langurs in Sabangau tropical peat-swamp forest, Central Kalimantan, Indonesia.

PubMed

Ehlers Smith, David A; Ehlers Smith, Yvette C

2013-08-01

Because of the large-scale destruction of Borneo's rainforests on mineral soils, tropical peat-swamp forests (TPSFs) are increasingly essential for conserving remnant biodiversity, particularly in the lowlands where the majority of habitat conversion has occurred. Consequently, effective strategies for biodiversity conservation are required, which rely on accurate population density and distribution estimates as a baseline. We sought to establish the first population density estimates of the endemic red langur (Presbytis rubicunda) in Sabangau TPSF, the largest remaining contiguous lowland forest-block on Borneo. Using Distance sampling principles, we conducted line transect surveys in two of Sabangau's three principle habitat sub-classes and calculated group density at 2.52 groups km⁻² (95% CI 1.56-4.08) in the mixed-swamp forest sub-class. Based on an average recorded group size of 6.95 individuals, population density was 17.51 ind km⁻², the second highest density recorded in this species. The accessible area of the tall-interior forest, however, was too disturbed to yield density estimates representative of the entire sub-class, and P. rubicunda was absent from the low-pole forest, likely as a result of the low availability of the species' preferred foods. This absence in 30% of Sabangau's total area indicates the importance of in situ population surveys at the habitat-specific level for accurately informing conservation strategies. We highlight the conservation value of TPSFs for P. rubicunda given the high population density and large areas remaining, and recommend 1) quantifying the response of P. rubicunda to the logging and burning of its habitats; 2) surveying degraded TPSFs for viable populations, and 3) effectively delineating TPSF sub-class boundaries from remote imagery to facilitate population estimates across the wider peat landscape, given the stark contrast in densities found across the habitat sub-classes of Sabangau. © 2013 Wiley Periodicals, Inc.

Sex Distribution of Paper Mulberry (Broussonetia papyrifera) in the Pacific.

PubMed

Peñailillo, Johany; Olivares, Gabriela; Moncada, Ximena; Payacán, Claudia; Chang, Chi-Shan; Chung, Kuo-Fang; Matthews, Peter J; Seelenfreund, Andrea; Seelenfreund, Daniela

2016-01-01

Paper mulberry (Broussonetia papyrifera (L.) L'Hér. ex Vent) is a dioecious tree native to East Asia and mainland Southeast-Asia, introduced prehistorically to Polynesia as a source of bark fiber by Austronesian-speaking voyagers. In Oceania, trees are coppiced and harvested for production of bark-cloth, so flowering is generally unknown. A survey of botanical records of paper mulberry revealed a distributional disjunction: the tree is apparently absent in Borneo and the Philippines. A subsequent study of chloroplast haplotypes linked paper mulberry of Remote Oceania directly to a population in southern Taiwan, distinct from known populations in mainland Southeast-Asia. We describe the optimization and use of a DNA marker designed to identify sex in paper mulberry. We used this marker to determine the sex distribution in selected localities across Asia, Near and Remote Oceania. We also characterized all samples using the ribosomal internal transcribed spacer sequence (ITS) in order to relate results to a previous survey of ITS diversity. In Near and Remote Oceania, contemporary paper mulberry plants are all female with the exception of Hawaii, where plants of both sexes are found. In its natural range in Asia, male and female plants are found, as expected. Male plants in Hawaii display an East Asian ITS genotype, consistent with modern introduction, while females in Remote Oceania share a distinctive variant. Most paper mulberry plants now present in the Pacific appear to be descended from female clones introduced prehistorically. In Hawaii, the presence of male and female plants is thought to reflect a dual origin, one a prehistoric female introduction and the other a modern male introduction by Japanese/Chinese immigrants. If only female clones were dispersed from a source-region in Taiwan, this may explain the absence of botanical records and breeding populations in the Philippines and Borneo, and Remote Oceania.

Indonesia's great frontier and migration policy.

PubMed

Maloney, C

1987-01-01

The population of Indonesia is 175 million, of which 65% live in Java. Java has only 7% of the land area, causing a population density of 2,000/square mile. This has lead the government to introduce a policy of transmigration which encourages people to move from Java to the larger outer islands. In the last 35 years 4.3 million people have moved from Java to Sumatra, Borneo, Celebes, and Irian Jaya. The total area of Indonesia stretches over 3,200 miles and has 16,000 islands of which 1,000 are inhabited. It has vast resources of oil, lumber, rubber, tin, palm oil, copra, coffee, tea, pepper, cloves, nutmeg, and quinine. Indonesia is also rich in minerals, including coal, bauxite, iron ore, and gold. Even with a national family planning program, population growth has reached 2.1% a year. 3 other islands that people are induced to move from are Madura, Bali, and Lombok, although their population densities are less then Java. The small islands near Singapore are being developed and Batam will be a free port to compete with Hong Kong. The most intense migration has been to Kalimantan (Borneo) which has 4 provinces. The migration policy began in 1905 and by 1930 100,000 people, had moved to other islands; 600,000 people were relocated to plantations in Java for labor needs. In 1979-84, a more ambitious program costing 2.3 billion moved 1.5 million people. In the most recent 1984-89 plan, a goal of 3.1 million were to be relocated but due to budgetary restrictions only 150,000 families have moved. The main social issue addresses the domination of other people by Javanese, not only in numbers but cultural differences. Some observers say the real reason for migration is political in ensuring the boundaries and geographic integrity of Indonesia.

Flowering mechanisms, pollination strategies and floral scent analyses of syntopically co-flowering Homalomena spp. (Araceae) on Borneo.

PubMed

Hoe, Y C; Gibernau, M; Maia, A C D; Wong, S Y

2016-07-01

In this study, the flowering mechanisms and pollination strategies of seven species of the highly diverse genus Homalomena (Araceae) were investigated in native populations of West Sarawak, Borneo. The floral scent compositions were also recorded for six of these species. The selected taxa belong to three out of four complexes of the section Cyrtocladon (Hanneae, Giamensis and Borneensis). The species belonging to the Hanneae complex exhibited longer anthesis (53-62 h) than those of the Giamensis and Borneensis complexes (ca. 30 h). Species belonging to the Hanneae complex underwent two floral scent emission events in consecutive days, during the pistillate and staminate phases of anthesis. In species belonging to the Giamensis and Borneensis complexes, floral scent emission was only evident to the human nose during the pistillate phase. A total of 33 volatile organic compounds (VOCs) were detected in floral scent analyses of species belonging to the Hanneae complex, whereas 26 VOCs were found in samples of those belonging to the Giamensis complex. The floral scent blends contained uncommon compounds in high concentration, which could ensure pollinator discrimination. Our observations indicate that scarab beetles (Parastasia gestroi and P. nigripennis; Scarabaeidae, Rutelinae) are the pollinators of the investigated species of Homalomena, with Chaloenus schawalleri (Chrysomelidae, Galeuricinae) acting as a secondary pollinator. The pollinators utilise the inflorescence for food, mating opportunities and safe mating arena as rewards. Flower-breeding flies (Colocasiomyia nigricauda and C. aff. heterodonta; Diptera, Drosophilidae) and terrestrial hydrophilid beetles (Cycreon sp.; Coleoptera, Hydrophilidae) were also frequently recovered from inflorescences belonging to all studied species (except H. velutipedunculata), but they probably do not act as efficient pollinators. Future studies should investigate the post-mating isolating barriers among syntopically co-flowering Homalomena sharing the same visiting insects. © 2016 German Botanical Society and The Royal Botanical Society of the Netherlands.

Strontium and carbon isotope stratigraphy of the Late Jurassic shallow marine limestone in western Palaeo-Pacific, northwest Borneo

NASA Astrophysics Data System (ADS)

Kakizaki, Yoshihiro; Weissert, Helmut; Hasegawa, Takashi; Ishikawa, Tsuyoshi; Matsuoka, Jun; Kano, Akihiro

2013-09-01

Strontium and carbon isotope stratigraphy was applied to a 202 m-thick shallow marine carbonate section within the Late Jurassic Bau Limestone at the SSF quarry in northwest Borneo, Malaysia, which was deposited in the western Palaeo-Pacific. Strontium isotopic ratios of rudist specimens suggest that the SSF section was formed between the latest Oxfordian (155.95 Ma) and the Late Kimmeridgian (152.70 Ma), which is consistent with previous biostratigraphy. The δ13Ccarb values of bulk carbonate range from -0.10 to +2.28‰ and generally show an increasing upward trend in the lower part of the section and a decreasing upward trend in the upper part of the section. A comparable pattern is preserved in the δ13Corg isotope record. Limestone samples of the SSF section mainly preserve the initial δ13Ccarb values, except for the interval 84-92 m, where an apparent negative anomaly likely developed as a result of meteoric diagenesis. Comparing with the Tethyan δ13Ccarb profile, a negative anomaly in the lower SSF section can be correlated with the lowered δ13C values around the Oxfordian/Kimmeridgian boundary. In addition, δ13Ccarb values of the Bau Limestone are generally ∼1‰ lower than the Tethyan values, but comparable with the values reported from Scotland and Russia, located in Boreal realm during the Late Jurassic. This suggests that either the Tethyan record or the other records have been affected by the δ13C values of regionally variable dissolved inorganic carbon (DIC). The Late Jurassic δ13CDIC values are thought to have been regionally variable as a result of their palaeoceanographic settings. This study shows that δ13C chemostratigraphy of the Palaeo-Pacific region contributes to an improved understanding of global carbon cycling and oceanography during this time period.

Through the Eyes of Children: Perceptions of Environmental Change in Tropical Forests

PubMed Central

Pellier, Anne-Sophie; Wells, Jessie A.; Abram, Nicola K.; Gaveau, David; Meijaard, Erik

2014-01-01

This study seeks to understand children's perceptions of their present and future environments in the highly biodiverse and rapidly changing landscapes of Kalimantan, Indonesian Borneo. We analyzed drawings by children (target age 10–15 years) from 22 villages, which show how children perceive the present conditions of forests and wildlife surrounding their villages and how they expect conditions to change over the next 15 years. Analyses of picture elements and their relationships to current landscape variables indicate that children have a sophisticated understanding of their environment and how different environmental factors interact, either positively or negatively. Children appear to have landscape-dependent environmental perceptions, showing awareness of past environmental conditions and many aspects of recent trends, and translating these into predictions for future environmental conditions. The further removed their present landscape is from the originally forested one, the more environmental change they expect in the future, particularly declines in forest cover, rivers, animal diversity and increases in temperature and natural disasters. This suggests that loss of past perceptions and associated “shifting environmental baselines” do not feature strongly among children on Borneo, at least not for the perceptions we investigated here. Our findings that children have negative expectations of their future environmental conditions have important political implications. More than other generations, children have a stake in ensuring that future environmental conditions support their long-term well-being. Understanding what drives environmental views among children, and how they consider trade-offs between economic development and social and environmental change, should inform optimal policies on land use. Our study illuminates part of the complex interplay between perceptions of land cover and land use change. Capturing the views of children through artistic expressions provides a potentially powerful tool to influence public and political opinions, as well as a valuable approach for developing localized education and nature conservation programs. PMID:25093658

The Structure Difference in the Southern Margin of the Dangerous Grounds: Implications for the Final Evolution of the South China Sea

NASA Astrophysics Data System (ADS)

Xi, P.; Shen, C.; Zhao, Z.; Xie, X.; Mei, L.; Gong, J.; Huang, X.

2015-12-01

We interpret two multi-channel seismic reflection profiles, more than 900 km across the entire Dangerous Grounds, locating in east and west of the southern margin of the South China Sea respectively. Eight Cenozoic sequence boundaries are determined as well as three tectono-stratigraphic units. Detailed analysis of extensional features and unconformities revealed the tectonic in the east and west. Early extension (syn-rifting sequence) occurred in the two profiles during continental rifting, which lasted from Palaeocene to Early Oligocene, and resulted in formation of half-grabens and rotated fault-blocks. Late extension (drift-rifting sequence) has the significant difference in the both profiles. The eastern Dangerous Grounds entered rifting-depression stage and some compressional deformation occurred in the Reed Bank basin at about the beginning of Early Miocene, probably resulting from the collision of the Dangerous Grounds and the Sabah-Cagayan Arc. The western Dangerous Grounds was still in rifting until the end of Early Miocene, forming the MMU or DRU which is strongly erosional and represents a major break in sedimentation and/or erosion in partial area. Denudation fold and inverted fault can be distinguished blow the MMU, indicating the cessation of the South China Sea accompanied the NW compression, while the boundary corresponding the MMU is nearly a plano-conformity in the east. The thermal sag (post-rifting sequence) is characterized by non-faulted draping strata in the whole area. The different structure in east and west may be related to the final evolution of the SCS. When the proto-SCS closed in a scissor fashion plus the clockwise rotation of Borneo, the initial collision (c.20Ma) appeared in east part building the NW foreland basin system from Palawan Trough to Reed Bank in a short-live process, while the west part was drifting southwards until c.15Ma to form the even more remarkable foreland system from Borneo Trough to deep-water Sarawak.

Movement trajectories and habitat partitioning of small mammals in logged and unlogged rain forests on Borneo.

PubMed

Wells, Konstans; Pfeiffer, Martin; Lakim, Maklarin B; Kalko, Elisabeth K V

2006-09-01

1. Non-volant animals in tropical rain forests differ in their ability to exploit the habitat above the forest floor and also in their response to habitat variability. It is predicted that specific movement trajectories are determined both by intrinsic factors such as ecological specialization, morphology and body size and by structural features of the surrounding habitat such as undergrowth and availability of supportive structures. 2. We applied spool-and-line tracking in order to describe movement trajectories and habitat segregation of eight species of small mammals from an assemblage of Muridae, Tupaiidae and Sciuridae in the rain forest of Borneo where we followed a total of 13,525 m path. We also analysed specific changes in the movement patterns of the small mammals in relation to habitat stratification between logged and unlogged forests. Variables related to climbing activity of the tracked species as well as the supportive structures of the vegetation and undergrowth density were measured along their tracks. 3. Movement patterns of the small mammals differed significantly between species. Most similarities were found in congeneric species that converged strongly in body size and morphology. All species were affected in their movement patterns by the altered forest structure in logged forests with most differences found in Leopoldamys sabanus. However, the large proportions of short step lengths found in all species for both forest types and similar path tortuosity suggest that the main movement strategies of the small mammals were not influenced by logging but comprised generally a response to the heterogeneous habitat as opposed to random movement strategies predicted for homogeneous environments. 4. Overall shifts in microhabitat use showed no coherent trend among species. Multivariate (principal component) analysis revealed contrasting trends for convergent species, in particular for Maxomys rajah and M. surifer as well as for Tupaia longipes and T. tana, suggesting that each species was uniquely affected in its movement trajectories by a multiple set of environmental and intrinsic features.

Phylogenetic relationships of Malaysia's long-tailed macaques, Macaca fascicularis, based on cytochrome b sequences.

PubMed

Abdul-Latiff, Muhammad Abu Bakar; Ruslin, Farhani; Fui, Vun Vui; Abu, Mohd-Hashim; Rovie-Ryan, Jeffrine Japning; Abdul-Patah, Pazil; Lakim, Maklarin; Roos, Christian; Yaakop, Salmah; Md-Zain, Badrul Munir

2014-01-01

Phylogenetic relationships among Malaysia's long-tailed macaques have yet to be established, despite abundant genetic studies of the species worldwide. The aims of this study are to examine the phylogenetic relationships of Macaca fascicularis in Malaysia and to test its classification as a morphological subspecies. A total of 25 genetic samples of M. fascicularis yielding 383 bp of Cytochrome b (Cyt b) sequences were used in phylogenetic analysis along with one sample each of M. nemestrina and M. arctoides used as outgroups. Sequence character analysis reveals that Cyt b locus is a highly conserved region with only 23% parsimony informative character detected among ingroups. Further analysis indicates a clear separation between populations originating from different regions; the Malay Peninsula versus Borneo Insular, the East Coast versus West Coast of the Malay Peninsula, and the island versus mainland Malay Peninsula populations. Phylogenetic trees (NJ, MP and Bayesian) portray a consistent clustering paradigm as Borneo's population was distinguished from Peninsula's population (99% and 100% bootstrap value in NJ and MP respectively and 1.00 posterior probability in Bayesian trees). The East coast population was separated from other Peninsula populations (64% in NJ, 66% in MP and 0.53 posterior probability in Bayesian). West coast populations were divided into 2 clades: the North-South (47%/54% in NJ, 26/26% in MP and 1.00/0.80 posterior probability in Bayesian) and Island-Mainland (93% in NJ, 90% in MP and 1.00 posterior probability in Bayesian). The results confirm the previous morphological assignment of 2 subspecies, M. f. fascicularis and M. f. argentimembris, in the Malay Peninsula. These populations should be treated as separate genetic entities in order to conserve the genetic diversity of Malaysia's M. fascicularis. These findings are crucial in aiding the conservation management and translocation process of M. fascicularis populations in Malaysia.

Ecological Impacts of Deforestation and Forest Degradation in the Peat Swamp Forests of Northwestern Borneo

NASA Astrophysics Data System (ADS)

Nguyen, Ha Thanh

Tropical peatlands have some of the highest carbon densities of any ecosystem and are under enormous development pressure. This dissertation aimed to provide better estimates of the scales and trends of ecological impacts from tropical peatland deforestation and degradation across more than 7,000 hectares of both intact and disturbed peatlands in northwestern Borneo. We combined direct field sampling and airborne Light Detection And Ranging (LiDAR) data to empirically quantify forest structures and aboveground live biomass across a largely intact tropical peat dome. The observed biomass density of 217.7 +/- 28.3 Mg C hectare-1 was very high, exceeding many other tropical rainforests. The canopy trees were 65m in height, comprising 81% of the aboveground biomass. Stem density was observed to increase across the 4m elevational gradient from the dome margin to interior with decreasing stem height, crown area and crown roughness. We also developed and implemented a multi-temporal, Landsat resolution change detection algorithm for identify disturbance events and assessing forest trends in aseasonal tropical peatlands. The final map product achieved more than 92% user's and producer's accuracy, revealing that after more than 25 years of management and disturbances, only 40% of the area was intact forest. Using a chronosequence approach, with a space for time substitution, we then examined the temporal dynamics of peatlands and their recovery from disturbance. We observed widespread arrested succession in previously logged peatlands consistent with hydrological limits on regeneration and degraded peat quality following canopy removal. We showed that clear-cutting, selective logging and drainage could lead to different modes of regeneration and found that statistics of the Enhanced Vegetation Index and LiDAR height metrics could serve as indicators of harvesting intensity, impacts, and regeneration stage. Long-term, continuous monitoring of the hydrology and ecology of peatland can provide key insights regarding best management practices, restoration, and conservation priorities for this unique and rapidly disappearing ecosystem.

Deepwater fold and thrust belt classification, tectonics, structure and hydrocarbon prospectivity: A review

NASA Astrophysics Data System (ADS)

Morley, C. K.; King, R.; Hillis, R.; Tingay, M.; Backe, G.

2011-01-01

Deepwater fold and thrust belts (DWFTBs) are classified into near-field stress-driven Type 1 systems confined to the sedimentary section, and Type 2 systems deformed by either far-field stresses alone, or mixed near- and far-field stresses. DWFTBs can occur at all stages of the Wilson cycle up to early stage continent continent collision. Type 1 systems have either weak shale or salt detachments, they occur predominantly on passive margins but can also be found in convergent-related areas such as the Mediterranean and N. Borneo. Examples include the Niger and Nile deltas, the west coast of Africa, and the Gulf of Mexico. Type 2 systems are subdivided on a tectonic setting basis into continent convergence zones and active margin DWFTBs. Continent convergence zones cover DWFTBs developed during continent-arc or continent-continent collision, and those in a deepwater intracontinental setting (e.g. W. Sulawesi, Makassar Straits). Active margins include accretionary prisms and transform margins. The greatest variability in DWFTB structural style occurs between salt and shale detachments, and not between tectonic settings. Changes in fold amplitude and wavelength appear to be more related to thickness of the sedimentary section than to DWFTB type. In comparison with shale, salt detachment DWFTBS display a lower critical wedge taper, more detachment folds, long and episodic duration of deformation and more variation in vergence. Structures unique to salt include canopies and nappes. Accretionary prisms also standout from other DWFTBs due to their relatively long, continuous duration, rapid offshore propagation of the thrust front, and large amount of shortening. In terms of petroleum systems, many similar issues affect all DWFTBs, these include: the oceanward decrease in heat flow, offshore increase in age of mature source rock, and causes of trap failure (e.g. leaky oblique and frontal thrust faults, breach of top seal by fluid pipes). One major difference between Type 1 and Type 2 systems is reservoir rock. High quality, continent-derived, quartz-rich sandstones are generally prevalent in Type 1 systems. More diagenetically reactive minerals derived from igneous and ophiolitic sources are commonly present in Type 2 systems, or many are simply poor in well-developed turbidite sandstone units. However, some Type 2 systems, particularly those adjacent to active orogenic belts are partially sourced by high quality continent-derived sandstones (e.g. NW Borneo, S. Caspian Sea, Columbus Basin). In some cases very high rates of deposition in accretionary prisms adjacent to orogenic belts, coupled with uplift due to collision, results in accretionary prism related fold belts that pass laterally from sub-aerial to deepwater conditions (e.g. S. Caspian Sea, Indo-Burma Ranges). The six major hydrocarbon producing regions of DWFTBs worldwide (Gulf of Mexico, Niger Delta, NW Borneo, Brazil, West Africa, S. Caspian Sea) stand out as differing from most other DWFTBs in certain fundamental ways, particularly the very large volume of sediment deposited in the basins, and/or the great thickness and extent of salt or overpressured shale sdetachments.

Restoration of original 3D sedimentary geometries in deformed basin fill supporting reservoir characterization

NASA Astrophysics Data System (ADS)

Back, S.

2009-04-01

A large progradational clastic system centred on Brunei Darussalam has been present on the NW Borneo margin since the early middle Miocene. This system has many sedimentary and structural similarities with major deltaic provinces such as the Niger and Nile. It differs from these systems by being affected in the hinterland by contemporaneous compressional tectonics. Uplift partially forced strong progradation of the clastic system, but also folded older deltaic units. Erosion and the exhumation of folded strata in the area of the Jerudong Anticline resulted in the exposure of large-scale prograding clinoforms and syn-sedimentary deltaic faults of middle Miocene age along a natural cross-section of several tens of kilometres in extent. Westward of the key outcrop sites on the Jerudong Anticline, the middle Miocene deltaic units are overlain by late Miocene, Pliocene and Quaternary clastics up to 3 kilometres thick. Both, the middle Miocene target units of this study as well as the late Miocene to recent overburden are recorded in the subsurface of the Belait Syncline on regional 2D seismic lines (total line length around 1400 km) and at 7 well locations. In this study, we integrate the available geophysical subsurface information with existing structural, sedimentological and geomorphological field data of the "classic" Jerudong Anticline exposures (e.g., Back et al. 2001, Morley et al. 2003, Back et al. 2005) into a static 3D surface-subsurface model that provides quantitative constraints on the structural and stratigraphic architecture of the Miocene Belait delta and the overlying units in three dimensions, supporting basin-scale as well as reservoir-scale analysis of the subsurface rock volume. Additionally, we use the static surface-subsurface model as input for a tectonic retro-deformation of the study area, in which the 3D paleo-relief of the middle Miocene Belait delta is restored by unfolding and fault balancing (Back et al. 2008). This kinematic reconstruction ultimately provides a detailed view into the stratal architecture of middle Miocene delta clinoforms, indicating a close relationship between delta-lobe activity, clinoform morphology, and the generation of slumps and turbidites. Literature BACK, S., MORLEY, C.K., SIMMONS, M.D. & LAMBIASE, J.J. (2001): Depositional environment and sequence stratigraphy of Miocene deltaic cycles exposed along the Jerudong anticline, Brunei Darussalam. - Journal of Sedimentary Research, 71: 915-923. BACK, S., TIOE HAK JING, TRAN XUAN THANG & MORLEY, C.K. (2005): Stratigraphic development of synkinematic deposits in a large growth-fault system, onshore Brunei Darussalam. - Journal of the Geological Society, London, 162: 243-258. BACK, S., STROZYK, F., KUKLA, P.A. & LAMBIASE, J.J. (2008): 3D restoration of original sedimentary geometries in deformed basin fill, onshore Brunei Darussalam, NW Borneo. Basin Research, 20: 99-117. MORLEY, C.K., BACK, S., VANRENSBERGEN, P., CREVELLO, P. & LAMBIASE, J.J. (2003): Characteristics of repeated, detached, Miocene -Pliocene tectonic inversion events, in a large delta province on an active margin, Brunei Darussalam, Borneo. - Journal of Structural Geology, 25: 1147-1169.

Care demands on mothers caring for a child with Down syndrome: Malaysian (Sarawak) mothers' perspectives.

PubMed

Chan, Kim Geok; Lim, Khatijah Abdullah; Ling, How Kee

2015-10-01

This paper examines the experiences of mothers caring for a child with Down syndrome in the Malaysian (Sarawak) context. Qualitative interviews were conducted with 26 biological mothers of children with Down syndrome aged 18 years and below. They were accessed through selected child health clinics, community-based rehabilitation centres and schools using purposive sampling within two regions in Sarawak, one of the two Borneo States of Malaysia. Major themes emerging within the context of care demands were children's health, developmental delays, daily needs and behaviour issues. The insights obtained into the care demands experienced by mothers of children with Down syndrome have several implications for practice by care professionals. © 2014 Wiley Publishing Asia Pty Ltd.

Polymerase chain reaction identification of three members of the Anopheles sundaicus (Diptera: Culicidae) complex, malaria vectors in Southeast Asia.

PubMed

Dusfour, Isabelle; Blondeau, Johanna; Harbach, Ralph E; Vythilingham, Indra; Baimai, Visut; Trung, Ho D; Sochanta, Tho; Bangs, Michael J; Manguin, Sylvie

2007-09-01

Anopheles sundaicus s.l., a major malaria vector taxon, occurs primarily along coastal areas and on islands in Southeast Asia. Our previous studies using cytochrome oxidase I, cytochrome-b, and internal transcribed spacer 2 markers discriminated three allopatric species: An. sundaicus s.s. in northern Borneo, An. epiroticus in Southeast Asia, and An. sundaicus E on Sumatra and Java, Indonesia. Morphological comparisons of three developmental stages did not reveal unique diagnostic characters that could reliably distinguish the three species. Therefore, we developed a multiplex polymerase chain reaction (PCR) assay based on two mitochondrial DNA markers to unambiguously identify them. This PCR was tested on 374 specimens from 24 different geographical populations, expanding our knowledge of the distribution of these species.

Evidence for a fall raptor migration pathway across the South China Sea

USGS Publications Warehouse

Ellis, D.H.; Kepler, A.K.; Kepler, C.B.

1990-01-01

While conducting seabird surveys along the cruise track of the Soviet oceanographic Research Vessel Akademlk Korolev in the South China Sea in late October, 1988, we encountered about 150 land birds, including about 40 raptors. Most of the raptors were small accipiters, but we also recorded small numbers of Peregrine Falcons (Falco peregrinus) and Oriental Scops Owls (Otus sunia). We saw most of the raptors during a 3-day period in a restricted area ca 350 km southeast of the southern tip of the Indo-China Peninsula. The observations suggest that a significant raptor migration corridor exists between Viet Nam and Borneo. The behavior and body condition of the diurnal raptors suggest that they were in good health and were making extensive use of the ship for perching, roosting, and hunting.

Observations of the temporal variability in aerosol properties and their relationships to meteorology in the summer monsoonal South China Sea/East Sea: the scale-dependent role of monsoonal flows, the Madden-Julian Oscillation, tropical cyclones, squall lines and cold pools

NASA Astrophysics Data System (ADS)

Reid, J. S.; Lagrosas, N. D.; Jonsson, H. H.; Reid, E. A.; Sessions, W. R.; Simpas, J. B.; Uy, S. N.; Boyd, T. J.; Atwood, S. A.; Blake, D. R.; Campbell, J. R.; Cliff, S. S.; Holben, B. N.; Holz, R. E.; Hyer, E. J.; Lynch, P.; Meinardi, S.; Posselt, D. J.; Richardson, K. A.; Salinas, S. V.; Smirnov, A.; Wang, Q.; Yu, L.; Zhang, J.

2015-02-01

In a joint NRL/Manila Observatory mission, as part of the Seven SouthEast Asian Studies program (7-SEAS), a 2-week, late September 2011 research cruise in the northern Palawan archipelago was undertaken to observe the nature of southwest monsoonal aerosol particles in the South China Sea/East Sea (SCS/ES) and Sulu Sea region. Previous analyses suggested this region as a receptor for biomass burning from Borneo and Sumatra for boundary layer air entering the monsoonal trough. Anthropogenic pollution and biofuel emissions are also ubiquitous, as is heavy shipping traffic. Here, we provide an overview of the regional environment during the cruise, a time series of key aerosol and meteorological parameters, and their interrelationships. Overall, this cruise provides a narrative of the processes that control regional aerosol loadings and their possible feedbacks with clouds and precipitation. While 2011 was a moderate El Niño-Southern Oscillation (ENSO) La Niña year, higher burning activity and lower precipitation was more typical of neutral conditions. The large-scale aerosol environment was modulated by the Madden-Julian Oscillation (MJO) and its associated tropical cyclone (TC) activity in a manner consistent with the conceptual analysis performed by Reid et al. (2012). Advancement of the MJO from phase 3 to 6 with accompanying cyclogenesis during the cruise period strengthened flow patterns in the SCS/ES that modulated aerosol life cycle. TC inflow arms of significant convection sometimes span from Sumatra to Luzon, resulting in very low particle concentrations (minimum condensation nuclei CN < 150 cm-3, non-sea-salt PM2.5 < 1 μg m-3). However, elevated carbon monoxide levels were occasionally observed suggesting passage of polluted air masses whose aerosol particles had been rained out. Conversely, two drier periods occurred with higher aerosol particle concentrations originating from Borneo and Southern Sumatra (CN > 3000 cm-3 and non-sea-salt PM2.5 10-25 μg m-3). These cases corresponded with two different mechanisms of convection suppression: lower free-tropospheric dry-air intrusion from the Indian Ocean, and large-scale TC-induced subsidence. Veering vertical wind shear also resulted in aerosol transport into this region being mainly in the marine boundary layer (MBL), although lower free troposphere transport was possible on the western sides of Sumatra and Borneo. At the hourly time scale, particle concentrations were observed to be modulated by integer factors through convection and associated cold pools. Geostationary satellite observations suggest that convection often takes the form of squall lines, which are bowed up to 500 km across the monsoonal flow and 50 km wide. These squall lines, initiated by cold pools from large thunderstorms and likely sustained by a veering vertical wind shear and aforementioned mid-troposphere dry layers, propagated over 1500 km across the entirety of the SCS/ES, effectively cutting large swaths of MBL aerosol particles out of the region. Our conclusion is that while large-scale flow patterns are very important in modulating convection, and hence in allowing long-range transport of smoke and pollution, more short-lived phenomena can modulate cloud condensation nuclei (CCN) concentrations in the region, resulting in pockets of clean and polluted MBL air. This will no doubt complicate large scale comparisons of aerosol-cloud interaction.

Observations of the temporal variability in aerosol properties and their relationships to meteorology in the summer monsoonal South China Sea/East Sea: the role of monsoonal flows, the Madden-Julian Oscillation, tropical cyclones, squall lines and cold pools

NASA Astrophysics Data System (ADS)

Reid, J. S.; Lagrosas, N. D.; Jonsson, H. H.; Reid, E. A.; Sessions, W. R.; Simpas, J. B.; Uy, S. N.; Boyd, T. J.; Atwood, S. A.; Blake, D. R.; Campbell, J. R.; Cliff, S. S.; Holben, B. N.; Holz, R. E.; Hyer, E. J.; Lynch, P.; Meinardi, S.; Posselt, D. J.; Richardson, K. A.; Salinas, S. V.; Smirnov, A.; Wang, Q.; Yu, L. E.; Zhang, J.

2014-08-01

In a joint NRL/Manila Observatory mission, as part of the 7 SouthEast Asian Studies program (7SEAS), a two-week, late September~2011 research cruise in the northern Palawan Archipelago was undertaken to observe the nature of southwest monsoonal aerosol particles in the South China Sea/East Sea (SCS/ES) and Sulu Sea region. Previous analyses suggested this region as a~receptor for biomass burning from Borneo and Sumatra for boundary layer air entering the monsoonal trough. Anthropogenic pollution and biofuel emissions are also ubiquitous, as is heavy shipping traffic. Here, we provide an overview of the regional environment during the cruise, a time series of key aerosol and meteorological parameters, and their interrelationships. Overall, this cruise provides a~narrative of the processes that control regional aerosol loadings and their possible feedbacks with clouds and precipitation. While 2011 was a moderate El Nino/Southern Oscillation (ENSO) La Nina year, higher burning activity and lower precipitation was more typical of neutral conditions. The large-scale aerosol environment was modulated by the Madden-Julian Oscillation (MJO) and its associated tropical cyclone (TC) activity in a manner consistent with the conceptual analysis performed by Reid et al. (2012). Advancement of the MJO from phase 3 to 6 with accompanying cyclogenesis during the cruise period strengthened flow patterns in the SCS/ES that modulated aerosol lifecycle. TC inflow arms of significant convection sometimes span from Sumatra to Luzon, resulting in very low particle concentrations (minimum condensation nuclei CN < 150 cm-3, non-sea salt PM2.5=1μg m-3). However, elevated carbon monoxide levels were occasionally observed suggesting passage of polluted air masses whose aerosol particles had been rained out. Conversely, two drier periods occurred with higher aerosol particle concentrations originating from Borneo and Southern Sumatra (CN > 3000 cm-3 and non-sea salt PM2.510-25 μg m-3). These cases corresponded with two different mechanisms of convection suppression: lower free-tropospheric dry-air intrusion from the Indian Ocean, and large-scale TC-induced subsidence. Veering vertical wind shear also resulted in aerosol transport into this region being mainly in the marine boundary layer (MBL), although lower free troposphere transport was possible on the western sides of Sumatra and Borneo. At the hourly time scale, particle concentrations were observed to be modulated by integer factors through convection and associated cold pools. Geostationary satellite observations suggest that convection often takes the form of squall lines, which are bowed up to 500 km across the monsoonal flow and 50 km wide. These squall lines, initiated by cold pools from large thunderstorms and likely sustained by a veering vertical wind shear, propagated over 1500 km across the entirety of the SCS/ES-effectively cutting large swaths of MBL aerosol particles out of the region. Our conclusion is that while large-scale flow patterns are very important in modulating convection and hence allowing long range transport of smoke and pollution, more short-lived phenomena can modulate cloud condensation nuclei (CCN) concentrations in the region, resulting in pockets of clean and polluted MBL air.

The structure and stratigraphy of deepwater Sarawak, Malaysia: Implications for tectonic evolution

NASA Astrophysics Data System (ADS)

Madon, Mazlan; Kim, Cheng Ly; Wong, Robert

2013-10-01

The structural-stratigraphic history of the North Luconia Province, Sarawak deepwater area, is related to the tectonic history of the South China Sea. The Sarawak Basin initiated as a foreland basin as a result of the collision of the Luconia continental block with Sarawak (Sarawak Orogeny). The foreland basin was later overridden by and buried under the prograding Oligocene-Recent shelf-slope system. The basin had evolved through a deep foreland basin ('flysch') phase during late Eocene-Oligocene times, followed by post-Oligocene ('molasse') phase of shallow marine shelf progradation to present day. Seismic interpretation reveals a regional Early Miocene Unconformity (EMU) separating pre-Oligocene to Miocene rifted basement from overlying undeformed Upper Miocene-Pliocene bathyal sediments. Seismic, well data and subsidence analysis indicate that the EMU was caused by relative uplift and predominantly submarine erosion between ˜19 and 17 Ma ago. The subsidence history suggests a rift-like subsidence pattern, probably with a foreland basin overprint during the last 10 Ma. Modelling results indicate that the EMU represents a major hiatus in the sedimentation history, with an estimated 500-2600 m of missing section, equivalent to a time gap of 8-10 Ma. The EMU is known to extend over the entire NW Borneo margin and is probably related to the Sabah Orogeny which marks the cessation of sea-floor spreading in the South China Sea and collision of Dangerous Grounds block with Sabah. Gravity modelling indicates a thinned continental crust underneath the Sarawak shelf and slope and supports the seismic and well data interpretation. There is a probable presence of an overthrust wedge beneath the Sarawak shelf, which could be interpreted as a sliver of the Rajang Group accretionary prism. Alternatively, magmatic underplating beneath the Sarawak shelf could equally explain the free-air gravity anomaly. The Sarawak basin was part of a remnant ocean basin that was closed by oblique collision along the NW Borneo margin. The closure started in the Late Eocene in Sarawak and moved progressively northeastwards into Sabah until the Middle Miocene. The present-day NW Sabah margin may be a useful analogue for the Oligocene-Miocene Sarawak foreland basin.

Genetic diversity in the C-terminus of merozoite surface protein 1 among Plasmodium knowlesi isolates from Selangor and Sabah Borneo, Malaysia.

PubMed

Yap, Nan Jiun; Goh, Xiang Ting; Koehler, Anson V; William, Timothy; Yeo, Tsin Wen; Vythilingam, Indra; Gasser, Robin B; Lim, Yvonne A L

2017-10-01

Plasmodium knowlesi, a malaria parasite of macaques, has emerged as an important parasite of humans. Despite the significance of P. knowlesi malaria in parts of Southeast Asia, very little is known about the genetic variation in this parasite. Our aim here was to explore sequence variation in a molecule called the 42kDa merozoite surface protein-1 (MSP-1), which is found on the surface of blood stages of Plasmodium spp. and plays a key role in erythrocyte invasion. Several studies of P. falciparum have reported that the C-terminus (a 42kDa fragment) of merozoite surface protein-1 (MSP-1 42 ; consisting of MSP-1 19 and MSP-1 33 ) is a potential candidate for a malaria vaccine. However, to date, no study has yet investigated the sequence diversity of the gene encoding P. knowlesi MSP-1 42 (comprising Pk-msp-1 19 and Pk-msp-1 33 ) among isolates in Malaysia. The present study explored this aspect. Twelve P. knowlesi isolates were collected from patients from hospitals in Selangor and Sabah Borneo, Malaysia, between 2012 and 2014. The Pk-msp-1 42 gene was amplified by PCR and directly sequenced. Haplotype diversity (Hd) and nucleotide diversity (л) were studied among the isolates. There was relatively high genetic variation among P. knowlesi isolates; overall Hd and л were 1±0.034 and 0.01132±0.00124, respectively. A total of nine different haplotypes related to amino acid alterations at 13 positions, and the Pk-MSP-1 19 sequence was found to be more conserved than Pk-msp-1 33 . We have found evidence for negative selection in Pk-msp- 42 as well as the 33kDa and 19kDa fragments by comparing the rate of non-synonymous versus synonymous substitutions. Future investigations should study large numbers of samples from disparate geographical locations to critically assess whether this molecule might be a potential vaccine target for P. knowlesi. Copyright © 2017 Elsevier B.V. All rights reserved.

Spatio-temporal characteristics of PM10 concentration across Malaysia

NASA Astrophysics Data System (ADS)

Juneng, Liew; Latif, Mohd Talib; Tangang, Fredolin T.; Mansor, Haslina

The recurrence of forest fires in Southeast Asia and associated biomass burning, has contributed markedly to the problem of trans-boundary haze and the long-range movement of pollutants in the region. Air pollutants, specifically particulate matter in the atmosphere, have received extensive attention, mainly because of their adverse effect on people's health. In this study, the spatial and temporal variability of the PM10 concentration across Malaysia was analyzed by means of the rotated principal component analysis. The results suggest that the variability of the PM10 concentration can be decomposed into four dominant modes, each characterizing different spatial and temporal variations. The first mode characterizes the southwest coastal region of the Malaysian Peninsular with the PM10 showing a peak concentration during the summer monsoon i.e. when the winds are predominantly southerlies or southwesterlies, and a minimal concentration during the winter monsoon. The second mode features the region of western Borneo with the PM10 exhibiting a concentration surge in August-September, which is likely to be the result of the northward shift of the Inter Tropical Convergence Zone (ITCZ) and the subsequent rapid arrival of the rainy season. The third mode delineates the northern region of the Malaysian Peninsular with strong bimodality in the PM10 concentration. Seasonally, this component exhibits two concentration maxima during the late winter and summer monsoons, as well as two minima during the inter-monsoon periods. The fourth dominant mode characterizes the northern Borneo region which exhibits weaker seasonality of the PM10 concentration. Generally, the seasonal fluctuation of the PM10 concentration is largely associated with the seasonal variation of rainfall in the country. However, in addition to this, the PM10 concentration also fluctuates markedly in two timescale bands i.e. 10-20 days quasi-biweekly (QBW) and 30-60 days lower frequency (LF) band of the intra-seasonal timescales. These intra-seasonal fluctuations show strong seasonality with the largest fraction of variance occurring during the boreal summer and the weakest variance during the winter. Generally, the LF intra-seasonal oscillation is stronger compared to the QBW intra-seasonal band.

Aircraft-borne DOAS limb observations of iodine monoxide around Borneo

NASA Astrophysics Data System (ADS)

Großmann, Katja; Hossaini, Ryan; Mantle, Hannah; Chipperfield, Martyn; Wittrock, Folkard; Peters, Enno; Lampel, Johannes; Walker, Hannah; Heard, Dwayne; Krystofiak, Gisèle; Catoire, Valéry; Dorf, Marcel; Werner, Bodo; Pfeilsticker, Klaus

2015-04-01

Iodine monoxide (IO) has a major impact on the photochemistry of the troposphere. It can for example catalytically destroy ozone, influence the atmospheric oxidation capacity by changing the partitioning of the HOx and NOx species, or contribute to the formation of ultrafine particles. Information regarding the vertical distribution of IO is still sparse since only few vertical profiles of IO exist for the troposphere. Spectroscopic measurements were carried out from aboard the research aircraft DLR-Falcon during the SHIVA (Stratospheric ozone: Halogen Impacts in a Varying Atmosphere) campaign at Malaysian Borneo in November and December 2011 to study the abundance and transport of trace gases in the lower atmosphere. Sixteen research flights were performed covering legs near the surface in the marine boundary layer (MBL) as well as in the free troposphere (FT) up to an altitude of 13 km. The spectroscopic measurements were evaluated using the Differential Optical Absorption Spectroscopy (DOAS) technique in limb geometry, which supports observations of UV/visible absorbing trace gases, such as O4, BrO, IO, NO2, HCHO, CHOCHO, HONO and H2O, and altitude information was gained via the O4 scaling technique and/or full inversion. The inferred vertical profiles of IO showed mixing ratios of 0.5-1.5 ppt in the MBL, which decreased to 0.1-0.3 ppt in the FT. Occasionally, the IO observed in the FT of the marine environment coincided with elevated amounts of CO, but no IO was observed over land, neither in the boundary layer, nor in the FT. This behavior strongly indicated that the major sources for IO were organic and inorganic precursor molecules emitted from the ocean, which during daytime rapidly formed a sizable amount of IO in the MBL that was occasionally transported into the FT where efficient loss processes for IO must exist. The inferred vertical profiles of IO are compared to simulations using the global 3-D chemistry transport model TOMCAT including recent fluxes of HOI and I2 to examine possible sinks of iodine.

Developmental changes in the facial morphology of the Borneo orangutan (Pongo pygmaeus): possible signals in visual communication.

PubMed

Kuze, Noko; Malim, Titol Peter; Kohshima, Shiro

2005-04-01

Orangutans display remarkable developmental changes and sexual differences in facial morphology, such as the flanges or cheek-pads that develop only on the face of dominant adult males. These changes suggest that facial morphology is an important factor in visual communication. However, developmental changes in facial morphology have not been examined in detail. We studied developmental changes in the facial morphology of the Borneo orangutan (Pongo pygmaeus) by observing 79 individuals of various ages living in the Sepilok Orangutan Rehabilitation Centre (SORC) in Malaysia and in Japanese zoos. We also analyzed photographs of one captive male that were taken over a period of more than 16 years. There were clear morphological changes that occurred with growth, and we identified previously unreported sexual and developmental differences in facial morphology. Light-colored skin around the eyes and mouth is most prominent in animals younger than 3 years, and rapidly decreases in area through the age of approximately 7 years. At the same time, the scattered, erect hairs on the head (infant hair) become thick, dense hairs lying on the head (adult hair) in both sexes. The results suggest that these features are infant signals, and that adult signals may include darkened face color, adult hair, whiskers, and a beard, which begin to develop after the age of approximately 7 years in both sexes. In females, the eyelids remain white even after 10 years, and turn black at around the age of 20; in males, the eyelids turn black before the age of 10. The whiskers and beards of adults are thicker in males than in females, and are fully developed before the age of 10 in males, while they begin to develop in females only after approximately 20 years. White eyelids and undeveloped whiskers and beards may be visual signals that are indicative of young adult females. Our results also show that the facial morphology of the unflanged male is similar to that of the adult female, although it has also been pointed out that unflanged males resemble younger individuals. Copyright 2005 Wiley-Liss, Inc

Modelling the Species Distribution of Flat-Headed Cats (Prionailurus planiceps), an Endangered South-East Asian Small Felid

PubMed Central

Hearn, Andrew J.; Hesse, Deike; Mohamed, Azlan; Traeholdt, Carl; Cheyne, Susan M.; Sunarto, Sunarto; Jayasilan, Mohd-Azlan; Ross, Joanna; Shapiro, Aurélie C.; Sebastian, Anthony; Dech, Stefan; Breitenmoser, Christine; Sanderson, Jim; Duckworth, J. W.; Hofer, Heribert

2010-01-01

Background The flat-headed cat (Prionailurus planiceps) is one of the world's least known, highly threatened felids with a distribution restricted to tropical lowland rainforests in Peninsular Thailand/Malaysia, Borneo and Sumatra. Throughout its geographic range large-scale anthropogenic transformation processes, including the pollution of fresh-water river systems and landscape fragmentation, raise concerns regarding its conservation status. Despite an increasing number of camera-trapping field surveys for carnivores in South-East Asia during the past two decades, few of these studies recorded the flat-headed cat. Methodology/Principal Findings In this study, we designed a predictive species distribution model using the Maximum Entropy (MaxEnt) algorithm to reassess the potential current distribution and conservation status of the flat-headed cat. Eighty-eight independent species occurrence records were gathered from field surveys, literature records, and museum collections. These current and historical records were analysed in relation to bioclimatic variables (WorldClim), altitude (SRTM) and minimum distance to larger water resources (Digital Chart of the World). Distance to water was identified as the key predictor for the occurrence of flat-headed cats (>50% explanation). In addition, we used different land cover maps (GLC2000, GlobCover and SarVision LLC for Borneo), information on protected areas and regional human population density data to extract suitable habitats from the potential distribution predicted by the MaxEnt model. Between 54% and 68% of suitable habitat has already been converted to unsuitable land cover types (e.g. croplands, plantations), and only between 10% and 20% of suitable land cover is categorised as fully protected according to the IUCN criteria. The remaining habitats are highly fragmented and only a few larger forest patches remain. Conclusion/Significance Based on our findings, we recommend that future conservation efforts for the flat-headed cat should focus on the identified remaining key localities and be implemented through a continuous dialogue between local stakeholders, conservationists and scientists to ensure its long-term survival. The flat-headed cat can serve as a flagship species for the protection of several other endangered species associated with the threatened tropical lowland forests and surface fresh-water sources in this region. PMID:20305809

Epidemic and sporadic hepatitis E virus transmission in West Kalimantan (Borneo), Indonesia.

PubMed

Corwin, A; Putri, M P; Winarno, J; Lubis, I; Suparmanto, S; Sumardiati, A; Laras, K; Tan, R; Master, J; Warner, G; Wignall, F S; Graham, R; Hyams, K C

1997-07-01

A cross-sectional survey was conducted in West Kalimantan (Borneo), Indonesia to geographically profile hepatitis E virus (HEV) prevalence in the riverine areas recognized as the foci of epidemic HEV transmission in 1987. Additionally, a contiguous, although distinct, population with no identifiable historical exposure to epidemic HEV was surveyed downstream for comparative purposes. Eight hundred eighty-five sera were assayed by enzyme immunoabsorbent assay for anti-HEV IgG and anti-hepatitis A virus (HAV) IgG markers. A very high percent (90%) of both the outbreak and comparison populations was anti-HAV IgG positive by the age of nine years. In contrast, the prevalence of anti-HEV IgG in the outbreak area (50%) was significantly higher than in the comparison area (23%) (P < 0.0001). In both the outbreak and comparison areas, anti-HEV IgG prevalence increased with age ( < 0.0001), except for the group > or = 50 years of age. The prevalence (53%) of antibody to HEV in the population > or = seven years of age from the outbreak area (alive during the actual 1987 outbreak) was significantly (P < 0.0001) greater than among the children < seven years of age (born after the outbreak) (15%). However, anti-HEV IgG prevalence among the population from the comparison area did not differ significantly between the > or = seven- (23%) and < seven- (20%) year-old age groups. The percentage of anti-HEV IgG-positive individuals among males (47%) from the outbreak area was lower (P < 0.05) compared with females (55%). While overall usage of river water for drinking purposes was not universal, dependence on river water as a primary source was significantly higher (P < 0.001) in households from the outbreak area (60%) compared with the comparison area (30%). This study indicates persistence of an anti-HEV IgG response in a large percentage of the population seven years after an epidemic of HEV infections. Also, the relatively high prevalence (15%) of anti-HEV in children < seven years of age from the outbreak area reflects continuing, sporadic infections.

Modelling the species distribution of flat-headed cats (Prionailurus planiceps), an endangered South-East Asian small felid.

PubMed

Wilting, Andreas; Cord, Anna; Hearn, Andrew J; Hesse, Deike; Mohamed, Azlan; Traeholdt, Carl; Cheyne, Susan M; Sunarto, Sunarto; Jayasilan, Mohd-Azlan; Ross, Joanna; Shapiro, Aurélie C; Sebastian, Anthony; Dech, Stefan; Breitenmoser, Christine; Sanderson, Jim; Duckworth, J W; Hofer, Heribert

2010-03-17

The flat-headed cat (Prionailurus planiceps) is one of the world's least known, highly threatened felids with a distribution restricted to tropical lowland rainforests in Peninsular Thailand/Malaysia, Borneo and Sumatra. Throughout its geographic range large-scale anthropogenic transformation processes, including the pollution of fresh-water river systems and landscape fragmentation, raise concerns regarding its conservation status. Despite an increasing number of camera-trapping field surveys for carnivores in South-East Asia during the past two decades, few of these studies recorded the flat-headed cat. In this study, we designed a predictive species distribution model using the Maximum Entropy (MaxEnt) algorithm to reassess the potential current distribution and conservation status of the flat-headed cat. Eighty-eight independent species occurrence records were gathered from field surveys, literature records, and museum collections. These current and historical records were analysed in relation to bioclimatic variables (WorldClim), altitude (SRTM) and minimum distance to larger water resources (Digital Chart of the World). Distance to water was identified as the key predictor for the occurrence of flat-headed cats (>50% explanation). In addition, we used different land cover maps (GLC2000, GlobCover and SarVision LLC for Borneo), information on protected areas and regional human population density data to extract suitable habitats from the potential distribution predicted by the MaxEnt model. Between 54% and 68% of suitable habitat has already been converted to unsuitable land cover types (e.g. croplands, plantations), and only between 10% and 20% of suitable land cover is categorised as fully protected according to the IUCN criteria. The remaining habitats are highly fragmented and only a few larger forest patches remain. Based on our findings, we recommend that future conservation efforts for the flat-headed cat should focus on the identified remaining key localities and be implemented through a continuous dialogue between local stakeholders, conservationists and scientists to ensure its long-term survival. The flat-headed cat can serve as a flagship species for the protection of several other endangered species associated with the threatened tropical lowland forests and surface fresh-water sources in this region.

New lucinid bivalves from shallow and deeper water of the Indian and West Pacific Oceans (Mollusca, Bivalvia, Lucinidae)

PubMed Central

Taylor, John D.; Glover, Emily A.

2013-01-01

Abstract Four new species and a new genus of lucinid bivalves are described from shallow and deeper waters in the Indian and West Pacific Oceans. The new genus Scabrilucina (subfamily Lucininae) includes the little-known Scabrilucina victorialis (Melvill, 1899) from the Arabian Sea and Scabrilucina vitrea (Deshayes, 1844) from the Andaman Sea as well as a new species Scabrilucina melvilli from the Torres Strait off northeastern Australia. Ferrocina brunei new species (Lucininae) was recovered from 60 m near oil drilling activities off Borneo; its anatomy confirmed the presence of symbiotic bacteria. Two unusual deeper water species of Leucosphaerinae are described, both species included in on-going molecular analyses; Gonimyrtea ferruginea from 400–650 m in the southwest Pacific and Myrtina reflexa from 200–825 m off Zanzibar and Madagascar. PMID:24039537

Four New Species of Nepenthes L. (Nepenthaceae) from the Central Mountains of Mindanao, Philippines.

PubMed

Gronemeyer, Thomas; Coritico, Fulgent; Wistuba, Andreas; Marwinski, David; Gieray, Tobias; Micheler, Marius; Mey, François Sockhom; Amoroso, Victor

2014-06-06

Together with the islands of Sumatra (Indonesia) and Borneo (Indonesia, Malaysia), the Philippines are the main center of diversity for carnivorous pitcher plants of the genus, Nepenthes L. Nepenthes are the largest of all carnivorous plants, and the species with the biggest pitchers are capable of trapping and digesting small amphibians and even mammals. The central cordillera of Mindanao Island in the south of the Philippines is mostly covered with old, primary forest and is the largest remaining cohesive, untouched area of wilderness in the Philippines. In a recent field exploration of two areas of the central cordillera, namely Mount Sumagaya and a section of the Pantaron range, four new taxa of Nepenthes were discovered. These four remarkable new species, N. pantaronensis, N. cornuta, N. talaandig and N. amabilis, are described, illustrated and assessed.

The Influence of Indian Ocean Atmospheric Circulation on Warm Pool Hydroclimate During the Holocene Epoch

NASA Technical Reports Server (NTRS)

Tierney, J.E.; Oppo, D. W.; LeGrande, A. N.; Huang, Y.; Rosenthal, Y.; Linsley, B. K.

2012-01-01

Existing paleoclimate data suggest a complex evolution of hydroclimate within the Indo-Pacific Warm Pool (IPWP) during the Holocene epoch. Here we introduce a new leaf wax isotope record from Sulawesi, Indonesia and compare proxy water isotope data with ocean-atmosphere general circulation model (OAGCM) simulations to identify mechanisms influencing Holocene IPWP hydroclimate. Modeling simulations suggest that orbital forcing causes heterogenous changes in precipitation across the IPWP on a seasonal basis that may account for the differences in time-evolution of the proxy data at respective sites. Both the proxies and simulations suggest that precipitation variability during the September-November (SON) season is important for hydroclimate in Borneo. The preeminence of the SON season suggests that a seasonally lagged relationship between the Indian monsoon and Indian Ocean Walker circulation influences IPWP hydroclimatic variability during the Holocene.

A new species of open-air processional column termite, Hospitalitermes nigriantennalis sp. n. (Termitidae), from Borneo.

PubMed

Syaukani, Syaukani; Thompson, Graham J; Zettel, Herbert; Pribadi, Teguh

2016-01-01

A new species of open-air processional column termite is here described based on the soldier and worker castes from eight colonies in north Barito, central Kalimantan. Hospitalitermes nigriantennalis sp. n. is readily distinguished in the field from related Hospitalitermes spp. by the light brown to orangish coloration of the soldier head capsule that, further, is with vertex yellowish and nasus brownish. The soldier antenna and the maxillary and labial palps are blackish. By contrast, soldiers from other species of Hospitalitermes from this region have a uniformly black head capsule and antennae. Finally, Hospitalitermes nigriantennalis sp. n. has a minute indentation in the middle of the posterior part of head capsule, which further helps to differentiate this new species from other Hospitalitermes from the Indo-Malayan and Austro-Malayan regions.

A new species of open-air processional column termite, Hospitalitermes nigriantennalis sp. n. (Termitidae), from Borneo

PubMed Central

Syaukani, Syaukani; Thompson, Graham J.; Zettel, Herbert; Pribadi, Teguh

2016-01-01

Abstract A new species of open-air processional column termite is here described based on the soldier and worker castes from eight colonies in north Barito, central Kalimantan. Hospitalitermes nigriantennalis sp. n. is readily distinguished in the field from related Hospitalitermes spp. by the light brown to orangish coloration of the soldier head capsule that, further, is with vertex yellowish and nasus brownish. The soldier antenna and the maxillary and labial palps are blackish. By contrast, soldiers from other species of Hospitalitermes from this region have a uniformly black head capsule and antennae. Finally, Hospitalitermes nigriantennalis sp. n. has a minute indentation in the middle of the posterior part of head capsule, which further helps to differentiate this new species from other Hospitalitermes from the Indo-Malayan and Austro-Malayan regions. PMID:26877678

AVHRR for monitoring global tropical deforestation

NASA Technical Reports Server (NTRS)

Malingreau, J. P.; Laporte, N.; Tucker, C. J.

1989-01-01

Advanced Very High Resolution Radiometer (AVHRR) data have been used to assess the dynamics of forest trnsformations in three parts of the tropical belt. A large portion of the Amazon Basin has been systematically covered by Local Area Coverage (LAC) data in the 1985-1987 period. The analysis of the vegetation index and thermal data led to the identification and measurement of large areas of active deforestation. The Kalimantan/Borneo forest fires were monitored and their impact was evaluated using the Global Area Coverage (GAC) 4 km resolution data. Finally, High Resolution Picture Transmission (HRPT) data have provided preliminary information on current activities taking place at the boundary between the savanna and the forest in the Southern part of West Africa. The AVHRR approach is found to be a highly valuable means for carrying out deforestation assessments in regional and global perspectives.

Importation and co-circulation of multiple serotypes of dengue virus in Sarawak, Malaysia.

PubMed

Holmes, Edward C; Tio, Phaik-Hooi; Perera, David; Muhi, Jamail; Cardosa, Jane

2009-07-01

Although dengue is a common disease in South-East Asia, there is a marked absence of virological data from the Malaysian state of Sarawak located on the island of Borneo. From 1997 to 2002 we noted the co-circulation of DENV-2, DENV-3 and DENV-4 in Sarawak. To determine the origins of these Sarawak viruses we obtained the complete E gene sequences of 21 isolates. A phylogenetic analysis revealed multiple entries of DENV-2 and DENV-4 into Sarawak, such that multiple lineages co-circulate, yet with little exportation from Sarawak. Notably, all viral isolates were most closely related to those circulating in different localities in South-East Asia. In sum, our analysis reveals a frequent traffic of DENV in South-East Asia, with Sarawak representing a local sink population.

A new species of Rock Gecko genus Cnemaspis (Squamata: Gekkonidae) from Western Sarawak, Malaysia.

PubMed

Kurita, Takaki; Nishikawa, Kanto; Matsui, Masafumi; Hikida, Tsutomu

2017-05-03

A new species of Asian rock gecko, genus Cnemaspis, is described from Padawan, western Sarawak, Malaysian Borneo. The new species forms a clade with C. paripari and C. nigridia of the C. nigridia group in a mitochondrial DNA phylogeny and is similar to them morphologically in some characters such as caudal scalation. It differs from the other Asian Cnemaspis species in its unique combination of snout-vent length (up to 62.7 mm), 4-9 precloacal pores in males, keeled subcaudals with an enlarged, smooth, median row, presence of ventrolateral caudal tubercles, and coloration (head and upper flanks dark-yellow; anterior portion of tail black; posterior portion of tail white with black, paravertebral blob). Phylogenetic relationships within the C. nigridia group and the distributional ranges of species within the group suggest allopatric speciation by geographic isolation.

Glacial-interglacial organic carbon record from the Makassar Strait, Indonesia: Implications for regional changes in continental vegetation

USGS Publications Warehouse

Visser, K.; Thunell, R.; Goni, M.A.

2004-01-01

Recent studies convincingly show that climate in the Western Pacific Warm Pool and other equatorial/tropical regions was significantly colder (by ???3-4??C) during glacial periods, prompting a reexamination of the late Pleistocene paleoenvironments of these regions. This study examines changes in continental vegetation during the last two deglaciations (Terminations I and II) using a sediment core (MD9821-62) recovered from the Makassar Strait, Indonesia. Evidence based on the lignin phenol ratios suggests that vegetation on Borneo and other surrounding islands did not significantly change from tropical rainforest during the last two glacial periods relative to subsequent interglacial periods. This supports the hypothesis that the winter monsoon increased in strength during glacial periods, allowing Indonesia to maintain high rainfall despite the cooler conditions. ?? 2003 Elsevier Ltd. All rights reserved.

Potential effects of climate change on members of the Palaeotropical pitcher plant family Nepenthaceae.

PubMed

Gray, Laura K; Clarke, Charles; Wint, G R William; Moran, Jonathan A

2017-01-01

Anthropogenic climate change is predicted to have profound effects on species distributions over the coming decades. In this paper, we used maximum entropy modelling (Maxent) to estimate the effects of projected changes in climate on extent of climatically-suitable habitat for two Nepenthes pitcher plant species in Borneo. The model results predicted an increase in area of climatically-suitable habitat for the lowland species Nepenthes rafflesiana by 2100; in contrast, the highland species Nepenthes tentaculata was predicted to undergo significant loss of climatically-suitable habitat over the same period. Based on the results of the models, we recommend that research be undertaken into practical mitigation strategies, as approximately two-thirds of Nepenthes are restricted to montane habitats. Highland species with narrow elevational ranges will be at particularly high risk, and investigation into possible mitigation strategies should be focused on them.

Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi

PubMed Central

Sutton, Patrick L.; Luo, Zunping; Divis, Paul C. S.; Friedrich, Volney K.; Conway, David J.; Singh, Balbir; Barnwell, John W.; Carlton, Jane M.; Sullivan, Steven A.

2016-01-01

Plasmodium cynomolgi is a malaria parasite that typically infects Asian macaque monkeys, and humans on rare occasions. P. cynomolgi serves as a model system for the human malaria parasite Plasmodium vivax, with which it shares such important biological characteristics as formation of a dormant liver stage and a preference to invade reticulocytes. While genomes of three P. cynomolgi strains have been sequenced, genetic diversity of P. cynomolgi has not been widely investigated. To address this we developed the first panel of P. cynomolgi microsatellite markers to genotype eleven P. cynomolgi laboratory strains and 18 field isolates from Sarawak, Malaysian Borneo. We found diverse genotypes among most of the laboratory strains, though two nominally different strains were found to be genetically identical, We also investigated sequence polymorphism in two erythrocyte invasion gene families, the reticulocyte binding protein and Duffy binding protein genes, in these strains. We also observed copy number variation in rbp genes. PMID:26980604

Bioactive Cembranoids from the Soft Coral Genus Sinularia sp. in Borneo

PubMed Central

Kamada, Takashi; Kang, Min-Cheol; Phan, Chin-Soon; Zanil, Intan Irna; Jeon, You-Jin

2018-01-01

Soft corals are known to be prolific producers of a wide spectrum of biologically active cembranoids. One new cembranoid, sinularolide F (2), along with three known compounds, cembranolide (1), (E,E,E)-6,10,14-trimethyl-3-methylene-cis-3α,4,5,8,9,12,13,15α-octahydrocyclo tetradeca[β]furan-2(3H)-one (3), and denticulatolide (4), were isolated from the Bornean soft coral Sinularia sp. Compounds 2 and 4 showed potential anti-inflammatory activities against lipopolysaccharide-stimulated RAW 264.7 with IC50 values less than 6.25 µg/mL and anticancer activity against HL60 cell lines. The compounds’ mechanisms of action were investigated via the Western blot evaluation of their protein markers. These activities could be attributed to the presence of tertiary methyl at C-8 and the compounds’ 3D configurations. PMID:29561805

Historical review: Does falciparum malaria destroy isolated tribal populations?

PubMed

Shanks, G Dennis

Many isolated populations of tribal peoples were nearly destroyed when they first contacted infectious diseases particularly respiratory pathogens such as measles and smallpox. Surviving groups have often been found to have declining populations in the face of multiple social and infectious threats. Malaria, especially Plasmodium falciparum, was thought to be a major cause of depopulation in some tribal peoples isolated in tropical jungles. The dynamics of such host parasite interactions is unclear especially since most such populations would have had long histories of exposure to malaria. Three groups are individually reviewed: Meruts of Borneo, Yanomami of Amazonia, Jarawas of the Andaman Islands. The purpose of this review is to examine the role of falciparum malaria in the depopulation of some isolated tribal groups in order to understand what measures, if any, would be likely to prevent such losses. Copyright © 2016 Elsevier Ltd. All rights reserved.

Plasmodium knowlesi malaria in a traveller returning from the Philippines to Italy, 2016.

PubMed

De Canale, Ettore; Sgarabotto, Dino; Marini, Giulia; Menegotto, Nicola; Masiero, Serena; Akkouche, Wassim; Biasolo, Maria Angela; Barzon, Luisa; Palù, Giorgio

2017-10-01

Plasmodium knowlesi is a simian parasite responsible for most human cases of malaria in Malaysian Borneo. A timely recognition of infection is crucial because of the risk of severe disease due to the rapid increase in parasitemia. We report a case of P. knowlesi infection in a traveller who developed fever and thrombocytopenia after returning from the Philippines in 2016. Rapid antigen test was negative, microscopy examination showed parasites similar to Plasmodium malariae, with a parasite count of 10,000 parasites per μL blood, while molecular testing identified P. knowlesi infection. Treatment with atovaquone-proguanil led to resolution of fever and restoration of platelet count in two days. P. knowlesi infection should be suspected in febrile travellers returning from South East Asia. Due to the low sensitivity of rapid antigen tests and the low specificity of microscopy, confirmation by molecular tests is recommended.

Revision of the pseudo-orbweavers of the genus Fecenia Simon, 1887 (Araneae, Psechridae), with emphasis on their pre-epigyne

PubMed Central

Bayer, Steffen

2011-01-01

Abstract The present paper provides a taxonomic revision of the genus Fecenia with emphasis on the characteristics of the pre-epigynes which are integrated for the first time into an identification key. As a result, one species is revalidated, Fecenia protensa Thorell, 1891, stat. n., and two new junior synonyms for Fecenia protensa are recognised: Fecenia sumatrana Kulczyński, 1908, syn. n. and Fecenia nicobarensis (Tikader, 1977), syn. n. New records are reported: Fecenia ochracea (Doleschall, 1859)from Malaysian Borneo, Fecenia macilenta (Simon, 1885) from Sumatra, Indonesia, Fecenia protensa from Thailand and Malaysia, Fecenia travancoria Pocock, 1899 from Sri Lanka and Thailand, and Fecenia cylindrata Thorell, 1895 from Thailand and Laos. Additional information on the biology of Fecenia is provided and the validity of characters for identifying Fecenia species is discussed. PMID:22287909

Magnetic Susceptibility and Morphology of Natural Magnetic Mineral Deposit in Vicinity of Human’s Living

NASA Astrophysics Data System (ADS)

Zulaikah, S.; Azzahro, R.; Pranita, S. B.; Mu'alimah, E. S.; Munfarikha, N.; Dewiningsih; Fitria, W. L.; Niarta, H. A.

2017-05-01

Magnetic susceptibility and morphology of magnetic minerals have been explored to some samples from the different environment near the vicinity of human’s living, such as hot spring, apple plantation, paddy plantation, and reservoir. Magnetic susceptibility ranged from - 0.0009 × 10-6 m3/kg (Peat in central Borneo) to 98.27 × 10-6 m3/kg (Polluted Soil in Jalan Sukarno Hatta Malang). The grain size of magnetic mineral not more than that of 300 μm. Data analysis informs us that each environment where the magnetic minerals were deposited, influenced the two physical properties both of magnetic susceptibility and morphology of magnetic minerals. Regarding the environment process, magnetic susceptibility depends upon the grain size beside the kinds of magnetic minerals. So, it can be concluded that in every environment, the magnetic minerals have specific properties including magnetic susceptibility and the morphology of magnetic minerals.

The future of South East Asian rainforests in a changing landscape and climate.

PubMed

Hector, Andy; Fowler, David; Nussbaum, Ruth; Weilenmann, Maja; Walsh, Rory P D

2011-11-27

With a focus on the Danum Valley area of Sabah, Malaysian Borneo, this special issue has as its theme the future of tropical rainforests in a changing landscape and climate. The global environmental context to the issue is briefly given before the contents and rationale of the issue are summarized. Most of the papers are based on research carried out as part of the Royal Society South East Asia Rainforest Research Programme. The issue is divided into five sections: (i) the historical land-use and land management context; (ii) implications of land-use change for atmospheric chemistry and climate change; (iii) impacts of logging, forest fragmentation (particularly within an oil palm plantation landscape) and forest restoration on ecosystems and their functioning; (iv) the response and resilience of rainforest systems to climatic and land-use change; and (v) the scientific messages and policy implications arising from the research findings presented in the issue.

Riverine effects on mitochondrial structure of Bornean orangutans (Pongo pygmaeus) at two spatial scales.

PubMed

Jalil, M F; Cable, J; Sinyor, J; Lackman-Ancrenaz, I; Ancrenaz, M; Bruford, M W; Goossens, B

2008-06-01

We examined mitochondrial DNA control region sequences of 73 Kinabatangan orangutans to test the hypothesis that the phylogeographical structure of the Bornean orangutan is influenced by riverine barriers. The Lower Kinabatangan Wildlife Sanctuary contains one of the most northern populations of orangutans (Pongo pygmaeus) on Borneo and is bisected by the Kinabatangan River, the longest river in Sabah. Orang-utan samples on either side of the river were strongly differentiated with a high Phi(ST) value of 0.404 (P < 0.001). Results also suggest an east-west gradient of genetic diversity and evidence for population expansion along the river, possibly reflecting a postglacial colonization of the Kinabatangan floodplain. We compared our data with previously published sequences of Bornean orangutans in the context of river catchment structure on the island and evaluated the general relevance of rivers as barriers to gene flow in this long-lived, solitary arboreal ape.

Going the whole orang: Darwin, Wallace and the natural history of orangutans.

PubMed

van Wyhe, John; Kjærgaard, Peter C

2015-06-01

This article surveys the European discovery and early ideas about orangutans followed by the contrasting experiences with these animals of the co-founders of evolution by natural selection, Charles Darwin and Alfred Russel Wallace. The first non-human great ape that both of them interacted with was the orangutan. They were both profoundly influenced by what they saw, but the contexts of their observations could hardly be more different. Darwin met orangutans in the Zoological Gardens in London while Wallace saw them in the wild in Borneo. In different ways these observations helped shape their views of human evolution and humanity's place in nature. Their findings played a major role in shaping some of the key questions that were pursued in human evolutionary studies during the rest of the nineteenth century. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Potential effects of climate change on members of the Palaeotropical pitcher plant family Nepenthaceae

PubMed Central

Gray, Laura K.; Clarke, Charles; Wint, G. R. William

2017-01-01

Anthropogenic climate change is predicted to have profound effects on species distributions over the coming decades. In this paper, we used maximum entropy modelling (Maxent) to estimate the effects of projected changes in climate on extent of climatically-suitable habitat for two Nepenthes pitcher plant species in Borneo. The model results predicted an increase in area of climatically-suitable habitat for the lowland species Nepenthes rafflesiana by 2100; in contrast, the highland species Nepenthes tentaculata was predicted to undergo significant loss of climatically-suitable habitat over the same period. Based on the results of the models, we recommend that research be undertaken into practical mitigation strategies, as approximately two-thirds of Nepenthes are restricted to montane habitats. Highland species with narrow elevational ranges will be at particularly high risk, and investigation into possible mitigation strategies should be focused on them. PMID:28817596

Chloroquine-resistant falciparum malaria in East Kalimantan, Indonesia.

PubMed

Verdrager, J; Arwati; Simanjuntak, C H; Saroso, J S

1976-03-01

Following the discovery of four imported chloroquine-resistant P. falciparum infections in the Province of Yogyakarta (Island of Java) sensitivity tests were carried out in the Province of East Kalimantan Island of Borneo). Twenty subjects were given 25 mg. of chloroquine base per kilogram of body weight over three days. Two infections were found resistant at the RII level and a third at the RI level with early recrudescence on day 7. In the other 17 cases followed up to day 21, six were found again with asexual parasites between day 9 and day 14 and a seventh on day 21. These results confirm the presence of chloroquine resistance in P. falciparum in East Kalimantan and, together with previous findings, suggest a widespread distribution of chloroquine-resistant falciparum malaria in this Province of Indonesia. It is particularly interesting to note that chloroquine-resistant falciparum malaria has now been detected in almost all the area of dispersion of A. balabacensis.

Parasites found in the mouths of inhabitants of three villages of South Kalimantan (Borneo), Indonesia.

PubMed

Palmieri, J R; Halverson, B A; Sudjadi, S T; Purnomo; Masbar, S

1984-03-01

Infection rates of parasites in the oral cavity were compared for two study areas in South Kalimantan, Indonesia. Penguiran and Sungai Baru, two adjacent villages, were considered a single study area and were inhabited by 151 individuals ranging from 2 to 70 years. Tanah Intan, the second study area, had a population of 265 persons who also ranged from 2 to 70 years. The standard of living was low in all the villages (average of 450 U.S. dollars per family per year). Teeth and gums were examined by standard diagnostic techniques. Material from infected gums was examined for parasites. Of the 373 individuals studied, 49 were infected with Entamoeba gingivalis, 1 with Entamoeba histolytica, 19 with Trichomonas tenax, and 14 with Candida sp. The infection rates in the first study area were substantially lower than in the second study area.

Monomia lucida sp. nov., a new swimming crab (Crustacea: Decapoda: Portunidae) from the South China Sea.

PubMed

Koch, Milan; ĎuriŠ, ZdenĚk

2018-02-27

A new species of the portunid genus, Monomia Gistel, 1848, is described from the South China Sea in Vietnam. Monomia lucida sp. nov. is morphologically most similar to M. argentata (A. Milne-Edwards, 1861), which was originally described from Sarawak, on the island of Borneo. In addition to the stout, forward-directed anterolateral teeth of the carapace, the subrectangular sixth segment of the male pleon, and the long and slender laterally bent first gonopods, adults of the new species reach a greater size, and can also be distinguished from M. argentata by the colour pattern on the natatory dactylus. The independent specific status of M. lucida sp. nov. is also supported by molecular evidence. Aside from a comparison of this new species with other known congeners, new photographs of the holotype of M. samoensis (Ward, 1939) are also provided.

Two New Nepenthes Species from the Philippines and an Emended Description of Nepenthes ramos.

PubMed

Gronemeyer, Thomas; Suarez, Wally; Nuytemans, Herman; Calaramo, Michael; Wistuba, Andreas; Mey, François S; Amoroso, Victor B

2016-05-06

With 50 species of the genus Nepenthes L. currently described from the Philippines, it is without doubt that the country, along with the islands of Sumatra (Indonesia) and Borneo (Indonesia, Malaysia, Brunei), should be considered the center of diversity of the genus. In this work, we describe two new species. One species, N. aenigma sp. nov., is from Ilocos Norte province on Luzon Island and has the-for Nepenthes-unusual ecological preference to grow in dense vegetation in deep shade. The other new species is from Mount Hamiguitan in Davao Oriental province on Mindanao Island. With this new entry, Mount Hamiguitan is now home to four endemic species (N. peltata, N. micramphora, N. hamiguitanensis, N. justinae sp. nov.). Furthermore, we provide an emended description of N. ramos based on field data. Nepenthes kurata is synonymized here with N. ramos.

Summary of Synoptic Meteorological Observations. Indonesian Coastal Marine Areas. Volume 2. Area 8 - West Borneo, Area 9 - Karimata Strait, Area 10 - Southwest Java Sea, Area 11 - South Central Java, Area 12 - Southeast Java, Area 13 - Southeast Java Sea, Area 14 - Northeast Java Sea

DTIC Science & Technology

1975-04-01

5 ’ :00 0 1’.20 2. 219 39 : .:0 :00 .0 A.. AP99 120 , ~ ~ ~ ~ ~ -y- ,M -.7yT ,, T , . , .,77M III II P~ kID : (¢E(’Ll) 9•3-977AREA 0009 KARIMATA STRAIT...TYPE OTHER WEATHER PHENOMENA kNO 01D RAIN PAIN VAIL RAIG SNOW OTHER HAI. PORN AT PCPN PAST ?HOR FOG FOG WO SMOKE SPRAY NO SHoR PON FRZN 06 TIME HOUR LTNG...NAONO DIR RAIN RAIN ORIL RCZG SNOW OTHER HAIL PCORN A? FCN PAST THOR OTOH HAZE SPRy NOUST SI ? R G PUG W SMOK SPRAY No PHft PCN PRN OPTM OR LTNG Wa PORN

Some observations on the cholera (El Tor) epidemic in 1961-62

PubMed Central

Felsenfeld, Oscar

1963-01-01

The author discusses some of the features of the cholera epidemic caused by El Tor vibrios in 1961-62 in the Western Pacific. The disease originated in the Celebes and spread from there to other parts of Indonesia, to Sarawak and, possibly, to Kwangtung. Hong Kong and Macau were most probably infected from Kwangtung. Subsequently the disease reached the Philippines, progressing from Manila southwards to the other islands, whence it invaded British Borneo. The El Tor epidemic did not differ clinically or epidemiologically from other cholera outbreaks observed during the past decade. The disease attacked poor, under-nourished people living under insanitary conditions. It spread along the coastline and, to a limited extent, along inland waterways. The authorities in the affected territories recommended that the quarantine regulations, sanitary measures and treatment methods used against cholera caused by the so-called “true” cholera vibrios be applied also to cholera caused by El Tor vibrios. PMID:13962884

Genetic diversity and natural selection of Plasmodium knowlesi merozoite surface protein 1 paralog gene in Malaysia.

PubMed

Ahmed, Md Atique; Fauzi, Muh; Han, Eun-Taek

2018-03-14

Human infections due to the monkey malaria parasite Plasmodium knowlesi is on the rise in most Southeast Asian countries specifically Malaysia. The C-terminal 19 kDa domain of PvMSP1P is a potential vaccine candidate, however, no study has been conducted in the orthologous gene of P. knowlesi. This study investigates level of polymorphisms, haplotypes and natural selection of full-length pkmsp1p in clinical samples from Malaysia. A total of 36 full-length pkmsp1p sequences along with the reference H-strain and 40 C-terminal pkmsp1p sequences from clinical isolates of Malaysia were downloaded from published genomes. Genetic diversity, polymorphism, haplotype and natural selection were determined using DnaSP 5.10 and MEGA 5.0 software. Genealogical relationships were determined using haplotype network tree in NETWORK software v5.0. Population genetic differentiation index (F ST ) and population structure of parasite was determined using Arlequin v3.5 and STRUCTURE v2.3.4 software. Comparison of 36 full-length pkmsp1p sequences along with the H-strain identified 339 SNPs (175 non-synonymous and 164 synonymous substitutions). The nucleotide diversity across the full-length gene was low compared to its ortholog pvmsp1p. The nucleotide diversity was higher toward the N-terminal domains (pkmsp1p-83 and 30) compared to the C-terminal domains (pkmsp1p-38, 33 and 19). Phylogenetic analysis of full-length genes identified 2 distinct clusters of P. knowlesi from Malaysian Borneo. The 40 pkmsp1p-19 sequences showed low polymorphisms with 16 polymorphisms leading to 18 haplotypes. In total there were 10 synonymous and 6 non-synonymous substitutions and 12 cysteine residues were intact within the two EGF domains. Evidence of strong purifying selection was observed within the full-length sequences as well in all the domains. Shared haplotypes of 40 pkmsp1p-19 were identified within Malaysian Borneo haplotypes. This study is the first to report on the genetic diversity and natural selection of pkmsp1p. A low level of genetic diversity and strong evidence of negative selection was detected and observed in all the domains of pkmsp1p of P. knowlesi indicating functional constrains. Shared haplotypes were identified within pkmsp1p-19 highlighting further evaluation using larger number of clinical samples from Malaysia.

Upper Mantle Responses to India-Eurasia Collision in Indochina, Malaysia, and the South China Sea

NASA Astrophysics Data System (ADS)

Hongsresawat, S.; Russo, R. M.

2016-12-01

We present new shear wave splitting and splitting intensity measurements from SK(K)S phases recorded at seismic stations of the Malaysian National Seismic Network. These results, in conjunction with results from Tibet and Yunnan provide a basis for testing the degree to which Indochina and South China Sea upper mantle fabrics are responses to India-Eurasia collision. Upper mantle fabrics derived from shear wave splitting measurements in Yunnan and eastern Tibet parallel geodetic surface motions north of 26°N, requiring transmission of tractions from upper mantle depths to surface, or consistent deformation boundary conditions throughout the upper 200 km of crust and mantle. Shear wave splitting fast trends and surface velocities diverge in eastern Yunnan and south of 26°N, indicating development of an asthenospheric layer that decouples crust and upper mantle, or corner flow above the subducted Indo-Burma slab. E-W fast shear wave splitting trends southwest of 26°N/104°E indicate strong gradients in any asthenospheric infiltration. Possible upper mantle flow regimes beneath Indochina include development of olivine b-axis anisotropic symmetry due to high strain and hydrous conditions in the syntaxis/Indo-Burma mantle wedge (i.e., southward flow), development of strong upper mantle corner flow in the Indo-Burma wedge with olivine a-axis anisotropic symmetry (i.e., westward flow), and simple asthenospheric flow due to eastward motion of Sundaland shearing underlying asthenosphere. Further south, shear-wave splitting delay times at Malaysian stations vary from 0.5 seconds on the Malay Peninsula to over 2 seconds at stations on Borneo. Splitting fast trends at Borneo stations and Singapore trend NE-SW, but in northern Peninsular Malaysia, the splitting fast polarization direction is NW-SE, parallel to the trend of the Peninsula. Thus, there is a sharp transition from low delay time and NW-SE fast polarization to high delay times and fast polarization directions that parallel the strike of the now-inoperative spreading center in the South China Sea. This transition appears to occur in the central portion of Peninsular Malaysia and may mark the boundary between Tethyan upper mantle extruded from the India-Asia collision zone and supra-subduction upper mantle of the Indonesian arc.

Evaluating the utility of vegetation indices to monitoring forests in South America, Western & Central Africa, and Southeast Asia

NASA Astrophysics Data System (ADS)

Cherrington, E. A.; Vincent, G.; Barbier, N.; Pélissier, R.; Sabatier, D.; Berger, U.

2017-12-01

In recent years, there has been controversy regarding applying vegetation indices (VIs) for monitoring tropical forests because of data artefacts related to sun-sensor geometry issues. One means of addressing the issue is comparing the VI variation of tropical forests in similar latitudes. That is, if intra-annual variation in VIs is not driven by real structural and biological changes in the vegetation, then one would expect that forests on the same latitudes should display similar patterns of VI variation. Data from multiple vegetation indices (from MODIS and SPOT VEGETATION) were analyzed over three ten degree by ten degree tiles covering the Guianas, western-central Africa, and northern Borneo in Southeast Asia. In addition to comparing the intra-annual trends across the three regions, the trends were also compared with intra-annual patterns of temporal variation, to see if these explained the VI variation. Those analyses showed that not only did the VI variation across the three regions differ significantly, but the patterns in VI variation for at least two of the three regions were largely correlated with intra-annual variation in environmental factors such as rainfall or light availability. For the Guianas, the pattern of VI variation was largely correlated with the variation in solar radiation, while for western-central Africa, the pattern of variation was more correlated to the variation in rainfall. In contrast, for northern Borneo, the pattern of VI variation did not correlate well with either variation in solar elevation or with intra-annual variation in environmental factors. Firstly, the data would seem to suggest that the patterns of variation in VI data for tropical forests are not strongly biased by artefacts related to sun-sensor geometry effects. More importantly, however, the results also suggest that the phenological of forests in both the Guianas and in western-central Africa are governed by different environmental regimes. That is to say, the forests in the Guianas appear to be light-limited, whereas in contrast, the forests in western-central Africa appear to be moisture-limited. This research suggests that vegetation index data - when corrected for artefacts related to bi-directional effects - can indeed be used to study patterns of temporal variation of forests in the tropics.

Locally Appropriate Energy Strategies for the Developing World: A focus on Clean Energy Opportunities in Borneo

NASA Astrophysics Data System (ADS)

Shirley, Rebekah Grace

This dissertation focuses on an integration of energy modeling tools to explore energy transition pathways for emerging economies. The spate of growth in the global South has led to a global energy transition, evidenced in part by a surge in the development of large scale energy infrastructure projects for the provision of reliable electricity service. The rational of energy security and exigency often usher these large scale projects through to implementation with minimal analysis of costs: social and environmental impact, ecological risk, or opportunity costs of alternative energy transition pathways foregone. Furthermore, development of energy infrastructure is inherently characterized by the involvement of a number of state and non-state actors, with varying interests, objectives and access to authority. Being woven through and into social institutions necessarily impacts the design, control and functionality of infrastructure. In this dissertation I therefore conceptualize energy infrastructure as lying at the intersection, or nexus, of people, the environment and energy security. I argue that energy infrastructure plans and policy should, and can, be informed by each of these fields of influence in order to appropriately satisfy local development needs. This case study explores the socio-techno-environmental context of contemporary mega-dam development in northern Borneo. I describe the key actors of an ongoing mega-dam debate and the constellation of their interaction. This highlights the role that information may play in public discourse and lends insight into how inertia in the established system may stymie technological evolution. I then use a combination of power system simulation, ecological modeling and spatial analysis to analyze the potential for, and costs and tradeoffs of, future energy scenarios. In this way I demonstrate reproducible methods that can support energy infrastructure decision making by directly addressing data limitation barriers. I offer a platform for integrated analysis that considers cost perspectives across the nexus. The management of energy transitions is a growing field, critically important to low carbon futures. With the broader implications of my study I hope to contribute to a paradigm shift away from the dominant large-scale energy infrastructure as a means of energy security discourse, to a more encompassing security agenda that considers distributed and localized solutions.

Hydrogeomorphological and water quality impacts of oil palm conversion and logging in Sabah, Malaysian Borneo: a multi-catchment approach

NASA Astrophysics Data System (ADS)

Walsh, Rory; Nainar, Anand; Bidin, Kawi; Higton, Sam; Annammala, Kogilavani; Blake, William; Luke, Sarah; Murphy, Laura; Perryman, Emily; Wall, Katy; Hanapi, Jamil

2016-04-01

The last three decades have seen a combination of logging and land-use change across most of the rainforest tropics. This has involved conversion to oil palm across large parts of SE Asia. Although much is now known about the hydrological and sediment transport impacts of logging, relatively little is known about how impacts of oil palm conversion compare with those of logging. Furthermore little is known about the impacts of both on river morphology and water quality. This paper reports some findings of the first phase of a ten-year large-scale manipulative multi-catchment experiment (part of the SAFE - Stability of Altered Forest Ecosystems - Project), based in the upper part of the Brantian Catchment in Sabah, Malaysian Borneo; the project is designed to assess the degree to which adverse impacts of oil palm conversion (on erosion, downstream channel change, water quality and river ecology) might be reduced by retaining buffer zones of riparian forest of varying width from zero to 120 metres. Ten 2 km2 catchments of contrasting land use history have been instrumented since 2011 to record discharge, turbidity, conductivity and water temperature at 5-minute intervals. These comprise 6 repeat-logged catchments being subjected in 2015-16 to conversion to oil palm with varying riparian forest widths; a repeat-logged 'control' catchment; an old regrowth catchment; an oil palm catchment; and a primary forest catchment. In addition, (1) monthly water samples from the catchments have been analysed for nitrates and phosphates, (2) channel cross-sectional change along each stream has been monitored at six-monthly intervals and (3) supplementary surveys have been made of downstream bankfull channel cross-sectional size and water chemistry at a wider range of catchment sites, and (4) sediment cores have been taken and contemporary deposition monitored at a hierarchical network of sites in the large Brantian catchment for geochemical analysis and dating to establish the history of sedimentation and inferred changes in upstream sediment sources. Effects on river ecology were also assessed. This paper summarises the key findings to date, focussing on differences in suspended sediment dynamics, downstream bankfull channel size and shape, and pollution between oil palm catchments, and catchments under post-logging and primary rainforest.

Evaluation of resting traps to examine the behaviour and ecology of mosquito vectors in an area of rapidly changing land use in Sabah, Malaysian Borneo.

PubMed

Brown, Rebecca; Hing, Chua Tock; Fornace, Kimberly; Ferguson, Heather M

2018-06-14

Widespread deforestation occurring in the tropics is hypothesized to impact the transmission of vector-borne diseases (VBD). Predicting how environmental changes will impact VBD transmission is dependent on understanding the ecology and behaviour of potential vector species outside of domestic settings. However there are few reliable sampling tools for measuring the habitat preference and host choice of mosquito vectors; with almost none suitable for sampling recently blood-fed, resting mosquitoes. This study evaluated the use of two mosquito traps: the resting bucket (RB) and sticky resting bucket (SRB) traps relative to CDC backpack aspiration (CDC) for sampling mosquitoes resting in a range of habitats representing a gradient of deforestation. Eight habitats were selected for sampling around two villages in Kudat District, Malaysian Borneo, to reflect the range of habitats available to mosquitoes in and around human dwellings, and nearby forest habitats where reservoir hosts are present: secondary forest (edge, interior and canopy); plantations (palm and rubber); and human settlements (inside, under and around houses). Over 31 days, 2243 mosquitoes were collected in 5748 discrete collections. Nine mosquito genera were sampled with Aedes and Culex species being present in all habitats and most abundant. RB and CDC backpack aspiration were most efficient for sampling Culex whereas CDC backpack aspiration and SRB were most efficient for Aedes. Most Aedes identified to species level were Ae. albopictus (91%), with their abundance being highest in forest edge habitats. In contrast, Culex were most abundant under houses. Most blood-fed mosquitoes (76%) were found in human settlements; with humans and chickens being the only blood source. RB and SRB traps proved capable of sampling mosquitoes resting in all sampled habitats. However, sampling efficiency was generally low (c.0.1 per trap per day), necessitating traps to be deployed in high numbers for mosquito detection. None of the traps were effective for sampling zoonotic malaria vectors; however, SRB collected relatively higher numbers of the dengue vector Ae. albopictus. The higher abundance of mosquitoes in forest edge habitats indicates the potential value of these traps for investigating sylvatic dengue transmission. This study has demonstrated the merits in application of simple resting traps for characterising mosquito vector resting behaviour outside of the home.

Bird species and traits associated with logged and unlogged forest in Borneo.

PubMed

Cleary, Daniel F R; Boyle, Timothy J B; Setyawati, Titiek; Anggraeni, Celina D; Van Loon, E Emiel; Menken, Steph B J

2007-06-01

The ecological consequences of logging have been and remain a focus of considerable debate. In this study, we assessed bird species composition within a logging concession in Central Kalimantan, Indonesian Borneo. Within the study area (approximately 196 km2) a total of 9747 individuals of 177 bird species were recorded. Our goal was to identify associations between species traits and environmental variables. This can help us to understand the causes of disturbance and predict whether species with given traits will persist under changing environmental conditions. Logging, slope position, and a number of habitat structure variables including canopy cover and liana abundance were significantly related to variation in bird composition. In addition to environmental variables, spatial variables also explained a significant amount of variation. However, environmental variables, particularly in relation to logging, were of greater importance in structuring variation in composition. Environmental change following logging appeared to have a pronounced effect on the feeding guild and size class structure but there was little evidence of an effect on restricted range or threatened species although certain threatened species were adversely affected. For example, species such as the terrestrial insectivore Argusianus argus and the hornbill Buceros rhinoceros, both of which are threatened, were rare or absent in recently logged forest. In contrast, undergrowth insectivores such as Orthotomus atrogularis and Trichastoma rostratum were abundant in recently logged forest and rare in unlogged forest. Logging appeared to have the strongest negative effect on hornbills, terrestrial insectivores, and canopy bark-gleaning insectivores while moderately affecting canopy foliage-gleaning insectivores and frugivores, raptors, and large species in general. In contrast, undergrowth insectivores responded positively to logging while most understory guilds showed little pronounced effect. Despite the high species richness of logged forest, logging may still have a negative impact on extant diversity by adversely affecting key ecological guilds. The sensitivity of hornbills in particular to logging disturbance may be expected to alter rainforest dynamics by seriously reducing the effective seed dispersal of associated tree species. However, logged forest represents an increasingly important habitat for most bird species and needs to be protected from further degradation. Biodiversity management within logging concessions should focus on maintaining large areas of unlogged forest and mitigating the adverse effects of logging on sensitive groups of species.

Seasonal Forecasting of Fires across Southern Borneo, 1997-2010

NASA Astrophysics Data System (ADS)

Spessa, Allan; Field, Robert; Kaiser, Johannes; Langner, Andreas; Moore, Jonathan; Pappenberger, Florian; Siegert, Florian; Weber, Ulrich

2014-05-01

Wildfire is a fundamental Earth System process, affecting almost all biogeochemical cycles, and all vegetated biomes. Fires are naturally rare in humid tropical forests, and tropical trees are generally killed by even low-intensity fires. However, fire activity in the tropics has increased markedly over the past 15-20 years, especially in Indonesia, Amazonia, and more recently, central Africa also. Since fire is the prime tool for clearing land in the tropics, it not surprising that the increase in fire activity is strongly associated with increased levels of deforestation, which is driven mainly by world-wide demand for timber and agricultural commodities. The consequences of deforestation fires for biodiversity conservation and emissions of greenhouse gases and aerosols are enormous. For example, carbon emissions from tropical biomass burning are around 20% of annual average global fossil fuel emissions. The destructive fires in Indonesia during the exceptionally strong El Niño-induced drought in late 1997 and early 1998 rank as some of the largest peak emissions events in recorded history. Past studies estimate about 1Gt of carbon was released to the atmosphere from the Indonesian fires in 1997 (which were mostly concentrated in carbon-rich forested peatlands). This amount is equivalent to about 14% of the average global annual fossil fuel emissions released during the 1990s. While not as large as the 1997-98 events, significant emissions from biomass burning have also been recorded in other (less severe) El Niño years across Indonesia, in particular, 2002, 2004, 2006 and 2009-2010. Recent climate modelling studies indicate that the frequency of El Niño events may increase under future climate change, affecting many tropical countries, including Indonesia. An increased drought frequency plus a projected increase in population and land use pressures in Indonesia, imply there will be even more fires and emissions in future across the region. However, while several studies using historical data have established negative relationships between fires and antecedent rainfall, and/or positive relationships between fires and deforestation in regions affected by El Nino, comparatively little work has attempted to predict fires and emissions in such regions. Ensemble seasonal climate forecasts issued with several months lead-time have been applied to support risk assessment systems in many fields, notably agricultural production and natural disaster management of flooding, heat waves, drought and fire. The USA, for example, has a long-standing seasonal fire danger prediction system. Fire danger monitoring systems have been operating in Indonesia for over a decade, but, as of yet, no fire danger prediction systems exist. Given the effort required to mobilise suppression and prevention measures in Indonesia, one could argue that high fire danger periods must be anticipated months in advance for mitigation and response measures to be effective. To address this need, the goal of our work was to examine the utility of seasonal rainfall forecasts in predicting severe fires in Indonesia more than one month in advance, using southern Borneo (comprising the bulk of Kalimantan) as a case study. Here we present the results of comparing seasonal forecasts of monthly rainfall from ECMWF's System 4 against i) observed rainfall (GPCP), and ii) burnt area and deforestation (MODIS, AVHRR and Landsat) across southern Borneo for the period 1997-2010. Our results demonstrate the utility of using ECMWF's seasonal climate forecasts for predicting fire activity in the region. Potential applications include improved fire mitigation and responsiveness, and improved risk assessments of biodiversity and carbon losses through fire. These are important considerations for forest protection programmes (e.g. REDD+), forest carbon markets and forest (re)insurance enterprises.

Seven new species of Psechrus and additional taxonomic contributions to the knowledge of the spider family Psechridae (Araneae).

PubMed

Bayer, Steffen

2014-01-27

Seven new Psechrus species are described from South East Asia: P. arietinus sp. nov.(♂♀, Vietnam), P. insulanus sp. nov.(♂, Thailand), P. ampullaceus sp. nov.(♂♀, Vietnam), P. omistes sp. nov.(♂, Indonesia, Sumatra), P. quasillus sp. nov.(♂♀, Malaysia, Borneo), P. huberi sp. nov.(♀, Philippines), and P. wade sp. nov.(♂, Philippines). For the following species, new records are listed and intraspecific variation is discussed and illustrated: P. libelti Kulczyński, 1908, P. norops Bayer, 2012, P. rani Wang & Yin, 2001, P. khammouan Jäger, 2007, P. luangprabang Jäger, 2007, P. jaegeri Bayer, 2012, P. obtectus Bayer, 2012, P. kenting Yoshida, 2009 and P. crepido Bayer, 2012, and Fecenia protensa Thorell, 1891. The latter species is recorded from Vietnam for the first time. P. norops, P. libelti and an unidentified Psechrus species from Baluno, Mindanao are for the first time characterised and illustrated by their pre-epigynes and pre-vulvae.

The dispersal of Homo sapiens across southern Asia: how early, how often, how complex?

NASA Astrophysics Data System (ADS)

Dennell, Robin; Petraglia, Michael D.

2012-07-01

The timing and the paths of colonization of southern Asia by Homo sapiens are poorly known, though many population geneticists, paleoanthropologists, and archaeologists have contended that this process began with dispersal from East Africa, and occurred between 60,000 and 40,000 years ago. However, the evidence for this scenario is very weak, particularly the lack of human skeletal evidence between the Levant and Borneo before 40 ka, and other explanations are possible. Here we argue that environmental and archaeological information is increasingly indicating the likelihood that H. sapiens exited Africa much earlier than commonly thought, and may have colonized much of southern Asia well before 60,000 years ago. Additionally, we cannot exclude the possibility that several dispersal events occurred, from both North and East Africa, nor the likelihood that early populations of H. sapiens in southern Asia interbred with indigenous populations of Neanderthals, Denisovans and Homo erectus. The population history of southern Asia during the Upper Pleistocene is likely far more complex than currently envisaged.

An integrative taxonomic review of the agamid genus Bronchocela (Kuhl, 1820) from Peninsular Malaysia with descriptions of new montane and insular endemics.

PubMed

Grismer, L Lee; Wood, P L; Lee, Cheol Haeng; Quah, Evan S H; Anuar, Shahrul; Ngadi, Ehwan; Sites, Jack W

2015-04-20

An integrative taxonomic analysis is used to identify and describe two new species of the agamid genus Bronchocela (Kuhl) from Peninsular Malaysia: an upland species B. shenlong sp. nov. from Bukit Larut, Perak in the Bintang Mountain Range and Parit Falls, Cameron Highlands, Pahang in the Titiwangsa Mountain Range and an insular species, B. rayaensis sp. nov., from Pulau Langkawi, Kedah off the northwest coast on the border with Thailand. Both species are diagnosed from each other and all other species of Bronchocela on the basis of body shape, scale morphology, and color pattern. The analysis also demonstrates the remarkable genetic similarity of B. cristatella (Kuhl) throughout 1120 km of its range from northern Peninsular Malaysia to western Borneo despite its highly variable coloration and pattern. The two new species are appended to a rapidly growing list of newly described lizard species (60 to date) from Peninsular Malaysia tallied within the last decade.

Solar Water Heating System for Biodiesel Production

NASA Astrophysics Data System (ADS)

Syaifurrahman; Usman, A. Gani; Rinjani, Rakasiwi

2018-02-01

Nowadays, electricity become very expensive thing in some remote areas. Energy from solar panels give the solution as renewable energy that is environment friendly. West Borneo is located on the equator where the sun shines for almost 10-15 hours/day. Solar water heating system which is includes storage tank and solar collections becomes a cost-effective way to generate the energy. Solar panel heat water is delivered to water in storage tank. Hot water is used as hot fluid in biodiesel jacked reactor. The purposes of this research are to design Solar Water Heating System for Biodiesel Production and measure the rate of heat-transfer water in storage tank. This test has done for 6 days, every day from 8.30 am until 2.30 pm. Storage tank and collection are made from stainless steel and polystyrene a well-insulated. The results show that the heater can be reach at 50ºC for ±2.5 hours and the maximum temperature is 62ºC where the average of light intensity is 1280 lux.

Characterisation of Asian Snakehead Murrel Channa striata (Channidae) in Malaysia: An Insight into Molecular Data and Morphological Approach

PubMed Central

Song, Li Min; Munian, Kaviarasu; Abd Rashid, Zulkafli; Bhassu, Subha

2013-01-01

Conservation is imperative for the Asian snakeheads Channa striata, as the species has been overfished due to its high market demand. Using maternal markers (mitochondrial cytochrome c oxidase subunit 1 gene (COI)), we discovered that evolutionary forces that drove population divergence did not show any match between the genetic and morphological divergence pattern. However, there is evidence of incomplete divergence patterns between the Borneo population and the populations from Peninsular Malaysia. This supports the claim of historical coalescence of C. striata during Pleistocene glaciations. Ecological heterogeneity caused high phenotypic variance and was not correlated with genetic variance among the populations. Spatial conservation assessments are required to manage different stock units. Results on DNA barcoding show no evidence of cryptic species in C. striata in Malaysia. The newly obtained sequences add to the database of freshwater fish DNA barcodes and in future will provide information relevant to identification of species. PMID:24396312

Heavy metals in emergent trees and pioneers from tropical forest with special reference to forest fires and local pollution sources in Sarawak, Malaysia.

PubMed

Breulman, G; Markert, B; Weckert, V; Herpin, U; Yoneda, R; Ogino, K

2002-02-21

Leaf samples of tropical trees, i.e. Dryobalanops lanceolata (Kapur paji), Dipterocarpaceae and Macaranga spp. (Mahang), Euphorbiaceae were analyzed for 21 chemical elements. The pioneer Macaranga spp. exhibited higher concentrations for the majority of elements compared to the emergent species of Dryobalanops lanceolata, which was attributed to the higher physiological activity of the fast growing pioneer species compared to emergent trees. Lead showed rather high concentrations in several samples from the Bakam re-forestation site. This is suggested to be caused by emissions through brick manufacturing and related activities in the vicinity. A comparison of Dryobalanops lanceolata samples collected in 1993, 1995 and 1997 in the Lambir Hills National Park revealed that certain heavy metals, i.e. Co, Cu, Mn, Ni, Pb and Ti showed higher values in 1997 compared to the previous years, which could indicate an atmospheric input from the haze caused by the extensive forest fires raging in Borneo and other parts of Southeast Asia.

Origin of marginal basins of the NW Pacific and their plate tectonic reconstructions

NASA Astrophysics Data System (ADS)

Xu, Junyuan; Ben-Avraham, Zvi; Kelty, Tom; Yu, Ho-Shing

2014-03-01

Geometry of basins can indicate their tectonic origin whether they are small or large. The basins of Bohai Gulf, South China Sea, East China Sea, Japan Sea, Andaman Sea, Okhotsk Sea and Bering Sea have typical geometry of dextral pull-apart. The Java, Makassar, Celebes and Sulu Seas basins together with grabens in Borneo also comprise a local dextral, transform-margin type basin system similar to the central and southern parts of the Shanxi Basin in geometry. The overall configuration of the Philippine Sea resembles a typical sinistral transpressional "pop-up" structure. These marginal basins except the Philippine Sea basin generally have similar (or compatible) rift history in the Cenozoic, but there do be some differences in the rifting history between major basins or their sub-basins due to local differences in tectonic settings. Rifting kinematics of each of these marginal basins can be explained by dextral pull-apart or transtension. These marginal basins except the Philippine Sea basin constitute a gigantic linked, dextral pull-apart basin system.

Combining Natural Ingredients and Beliefs: The Dayak Tribe's Experience Caring for Sick Children with Traditional Medicine.

PubMed

Anggerainy, Shinta Widiastuty; Wanda, Dessie; Hayati, Happy

Instead of seeking conventional health care, the Dayak tribe in Borneo, Indonesia, treats sick children at home with traditional medicine. The objective of this descriptive, qualitative study was to explore the Dayak tribe's use of traditional medicine to care for sick children. Comprehensive interviews were conducted with 10 caregivers, with collected data analyzed using content analysis. Key recurring themes identified were: 1) traditional medicine as first aid; 2) ease of access and cost-effectiveness; 3) traditional medicine was not always effective; 4) a combination of natural ingredients and beliefs; 5) the importance of "communicating" with plants; and 6) engagement with metaphysical forces. Health professionals should respect familial cultures' beliefs regarding the provision of health care at home. Furthermore, they need to develop competency in performing cultural assessments and providing information to these parents on the risks of not seeking professional emergency care for children with conditions that can't be handled at home with traditional medicine.

Developing a predictive understanding of landscape importance to the Punan-Pelancau of East Kalimantan, Borneo.

PubMed

Cunliffe, Robert N; Lynam, Timothy J P; Sheil, Douglas; Wan, Meilinda; Salim, Agus; Basuki, Imam; Priyadi, Hari

2007-11-01

In order for local community views to be incorporated into new development initiatives, their perceptions need to be clearly understood and documented in a format that is readily accessible to planners and developers. The current study sought to develop a predictive understanding of how the Punan Pelancau community, living in a forested landscape in East Kalimantan, assigns importance to its surrounding landscapes and to present these perceptions in the form of maps. The approach entailed the iterative use of a combination of participatory community evaluation methods and more formal modeling and geographic information system techniques. Results suggest that landscape importance is largely dictated by potential benefits, such as inputs to production, health, and houses. Neither land types nor distance were good predictors of landscape importance. The grid-cell method, developed as part of the study, appears to offer a simple technique to capture and present the knowledge of local communities, even where their relationship to the land is highly complex, as was the case for this particular community.

Geology and development of Attake oil field, Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwartz, C.M.; Samsoe, B.S.; Laughbaum, G.H. Jr.

1973-04-01

Of particular significance in the Indonesia oil search was the discovery of the Attaka oil field, offshore E. Kalimantan (Borneo), in late 1970. After confirmation drilling from Sept. 1970 to Feb. 1971, field development and facility installation began in early 1971. First production was achieved in Nov. 1972. This major field is in the Tertiary Balikpapan Basin. Production occurs mainly from sublittoral to deltaic sands of the Attaka Series, of Pliocene and Miocene ages. The age of the deepest bed penetrated in the field area is middle Miocene. Well logs and paleontologic data indicate a predominately regressive sequence of deposition.more » Highly permeable pay sands, 34 in number, occur at intervals from 2,000 to 7,800 ft measured depth. The structure is a faulted anticline. Faults and stratigraphic variations in part control accumulation and affect fluid properties. The oil is very low in sulfur content, and has a range of gravity from 35 to 52/sup 0/ API. Both saturated and undersaturated reservoirs are present.« less

Geology of the Badak field, east Kalimantan, Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gwinn, J.W.; Helmig, H.M.; Kartaadipoetra, L.W.

1974-01-01

The Badak field was discovered in Jan. 1972. It is located on the coast of E. Kalimantan (Borneo), about 35 km northeast of the provincial capital of Samarinda. Oil and gas were found in a multitude of deltaic sandstone beds of middle Miocene to Pliocene age, between 4,500 and 11,000 ft. The structure is a broad anticline with flanks dipping less than 10' areal closure of roughly 40 sq km and vertical closure up to 1,000 ft depending on the depth. The majority of the closed reservoirs contain gas and condensate and the structure appears to be filled to itsmore » spill point. Oil occurs in some sands on the crest of the anticline and in oil rings below gas in several reservoirs. At this date, exploration for oil rings on the flanks of Badak anticline is still in progress. Recoverable reserves in the Badak field are estimated to be in excess of 6 trillion standard cu ft of hydrocarbon gas and 55 million bbl of hydrocarbon liquids.« less

PARACHUTING CATS AND CRUSHED EGGS The Controversy Over the Use of DDT to Control Malaria

PubMed Central

2008-01-01

The use of DDT to control malaria has been a contentious practice for decades. This controversy centers on concerns over the ecological harm caused by DDT relative to the gains in public health from its use to prevent malaria. Given the World Health Organization's recent policy decisions concerning the use of DDT to control malaria, it is worth reviewing the historical context of DDT use. Ecological concerns focused on evidence that DDT ingestion by predatory birds resulted in eggs with shells so thin they were crushed by adult birds. In addition, DDT spraying to control malaria allegedly resulted in cats being poisoned in some areas, which led to increased rodent populations and, in turn, the parachuting of cats into the highlands of the island of Borneo to kill the rodents, a story that influenced the decision to ban DDT spraying. I focus on this story with the intention of grounding the current debate on lessons from the past. PMID:18799776

Association between Landscape Factors and Spatial Patterns of Plasmodium knowlesi Infections in Sabah, Malaysia

PubMed Central

Abidin, Tommy Rowel; Alexander, Neal; Brock, Paddy; Grigg, Matthew J.; Murphy, Amanda; William, Timothy; Menon, Jayaram; Drakeley, Chris J.; Cox, Jonathan

2016-01-01

The zoonotic malaria species Plasmodium knowlesi has become the main cause of human malaria in Malaysian Borneo. Deforestation and associated environmental and population changes have been hypothesized as main drivers of this apparent emergence. We gathered village-level data for P. knowlesi incidence for the districts of Kudat and Kota Marudu in Sabah state, Malaysia, for 2008–2012. We adjusted malaria records from routine reporting systems to reflect the diagnostic uncertainty of microscopy for P. knowlesi. We also developed negative binomial spatial autoregressive models to assess potential associations between P. knowlesi incidence and environmental variables derived from satellite-based remote-sensing data. Marked spatial heterogeneity in P. knowlesi incidence was observed, and village-level numbers of P. knowlesi cases were positively associated with forest cover and historical forest loss in surrounding areas. These results suggest the likelihood that deforestation and associated environmental changes are key drivers in P. knowlesi transmission in these areas. PMID:26812373

Rainfall interception from a lowland tropical rainforest in Brunei

NASA Astrophysics Data System (ADS)

Dykes, A. P.

1997-12-01

Results from a programme of throughfall measurements in a lowland tropical rainforest in Brunei, northwest Borneo, indicate that interception losses amount to 18% of the gross incident rainfall. The high annual rainfall experienced by the study area results in annual interception losses of around 800 mm, which may result in total annual evapotranspiration losses significantly higher than in other rainforest locations. An improved version of Gash's analytical interception model is tested on the available data using assumed values for the "forest" parameters, and is found to predict interception losses extremely well. The model predictions are based on an estimated evaporation rate during rainfall of 0.71 mm h -1. This is significantly higher than has been reported in other tropical studies. It is concluded that these results are distinctive when compared with previous results from rainforests, and that further, detailed work is required to establish whether the enhanced evaporation rate is due to advective effects associated with the maritime setting of the study area.

Micro-scale δ18O analyses of a Borneo stalagmite across the Toba super-eruption

NASA Astrophysics Data System (ADS)

Orland, I. J.; Cobb, K. M.; Carolin, S.; Linzmeier, B.; Valley, J. W.; Adkins, J. F.

2016-12-01

The Toba super-eruption occurred in close association with an abrupt climate transition from Greenland Interstadial (GI-) 20 to Greenland Stadial (GS-) 20, roughly 74 ky BP. As such, it is conceivable that the eruption played a role, whether direct or indirect, in shaping global-scale climate in the years, decades, and/or centuries that followed. Understanding the climatic response to Toba is important not only because the eruption represents an extreme atmospheric perturbation that is relevant to modeling future climate change, but also because the climate response may have slowed human population growth. Recent attempts to characterize either the regional or global climate response to Toba have been limited by a lack of age control, geographic proximity, and/or a convincing marker of the major eruption. Multiple U-Th-dated calcite stalagmites from Gunung Mulu National Park (Borneo; 4°N, 115°E) reveal a 1,000-year long period with elevated oxygen isotope values (δ18O; Carolin et al. 2013) that began abruptly and within error of the 40Ar/39Ar-dated Toba eruption (Storey et al., 2012). The δ18O shift is interpreted as a change in regional rainfall δ18O, and perhaps reflects a prolonged shift in the mean state of tropical climate. Microdrill analysis of the Mulu stalagmites showed that the abrupt onset of this period is marked by a large (>1‰) monotonic increase in δ18O. Here, we examine the structure of the abrupt δ18O increase at high-resolution in Mulu stalagmite "SC03". The WiscSIMS CAMECA IMS 1280 was used to measure δ18O in 857 spots along a 5.5 mm ( 1300 yr) linear, growth-axis traverse that is centered on the microdrilled δ18O shift. SIMS spot diameters are 6 mm in the growth dimension, 2 yr temporal resolution, with spot-to-spot δ18O reproducibility of ±0.3‰ (2 s.d.). The SIMS data reveal four δ18O excursions of ±2-3‰ over 6-10 spot intervals ( 10-20 yrs) during the 300 yr transition from GI-20 to GS-20, likely caused by fluctuations in regional hydroclimate. It is unclear whether these fluctuations coincide with the Toba eruption horizons identified in polar ice cores (Svensson et al., 2013). We assess volcanic influence on the new δ18O data by comparison to adjacent micro-scale minor and trace element profiles in order to identify the fingerprints of discrete Toba ash layers in the stalagmite.

Tracing the depositional history of Kalimantan diamonds by zircon provenance and diamond morphology studies

NASA Astrophysics Data System (ADS)

Kueter, Nico; Soesilo, Joko; Fedortchouk, Yana; Nestola, Fabrizio; Belluco, Lorenzo; Troch, Juliana; Wälle, Markus; Guillong, Marcel; Von Quadt, Albrecht; Driesner, Thomas

2016-11-01

Diamonds in alluvial deposits in Southeast Asia are not accompanied by indicator minerals suggesting primary kimberlite or lamproite sources. The Meratus Mountains in Southeast Borneo (Province Kalimantan Selatan, Indonesia) provide the largest known deposit of these so-called "headless" diamond deposits. Proposals for the origin of Kalimantan diamonds include the adjacent Meratus ophiolite complex, ultra-high pressure (UHP) metamorphic terranes, obducted subcontinental lithospheric mantle and undiscovered kimberlite-type sources. Here we report results from detailed sediment provenance analysis of diamond-bearing Quaternary river channel material and from representative outcrops of the oldest known formations within the Alino Group, including the diamond-bearing Campanian-Maastrichtian Manunggul Formation. Optical examination of surfaces of diamonds collected from artisanal miners in the Meratus area (247 stones) and in West Borneo (Sanggau Area, Province Kalimantan Barat; 85 stones) points toward a classical kimberlite-type source for the majority of these diamonds. Some of the diamonds host mineral inclusions suitable for deep single-crystal X-ray diffraction investigation. We determined the depth of formation of two olivines, one coesite and one peridotitic garnet inclusion. Pressure of formation estimates for the peridotitic garnet at independently derived temperatures of 930-1250 °C are between 4.8 and 6.0 GPa. Sediment provenance analysis includes petrography coupled to analyses of detrital garnet and glaucophane. The compositions of these key minerals do not indicate kimberlite-derived material. By analyzing almost 1400 zircons for trace element concentrations with laser ablation ICP-MS (LA-ICP-MS) we tested the mineral's potential as an alternative kimberlite indicator. The screening ultimately resulted in a small subset of ten zircons with a kimberlitic affinity. Subsequent U-Pb dating resulting in Cretaceous ages plus a detailed chemical reflection make a kimberlitic origin unfavorable with respect to the regional geological history. Rather, trace elemental analyses (U, Th and Eu) suggest an eclogitic source for these zircons. The age distribution of detrital zircons allows in general a better understanding of collisional events that formed the Meratus orogen and identifies various North Australian Orogens as potential Pre-Mesozoic sediment sources. Our data support a model whereby the majority of Kalimantan diamonds were emplaced within the North Australian Craton by volcanic processes. Partly re-deposited into paleo-collectors or residing in their primary host, these diamond-deposits spread passively throughout Southeast Asia by terrane migration during the Gondwana breakup. Terrane amalgamation events largely metamorphosed these diamond-bearing lithologies while destroying the indicative mineral content. Orogenic uplift finally liberated their diamond-content into new, autochthonous placer deposits.

Non-refractory PM1 in SE Asia: Chemically speciated aerosol fluxes and concentrations above contrasting land-uses in SE Asia.

NASA Astrophysics Data System (ADS)

Phillips, Gavin; Farmer, Delphine; di Marco, Chiara; Misztal, Pawel; Sueper, Donna; Kimmel, Joel; Jimenez, Jose; Fowler, David; Nemitz, Eiko

2010-05-01

New measurements of VOC emissions (measured with leaf cuvettes, and ecosystem fluxes obtained from eddy covariance measurements) suggest that oil palm (Elaeis guineensis Jacq) is a significantly larger source of isoprene than tropical forest, in Borneo. These larger sources of isoprene measured over oil palm, allied with a larger anthropogenic component of local emissions, contrasts with the composition of the atmosphere in the semi-remote tropical forest environment. The difference in the atmospheric composition above different land-uses has the potential to lead to contrasting chemistry and physics controlling the formation and processing of particulate matter. Thus land use changes, driven by the economics of biofuels, could give rise to rapidly changing chemical and aerosol regimes in the tropics. It is therefore important to understand the current emissions, chemical processing and composition of organic aerosol over both (semi-)natural and anthropogenic land uses in the tropical environment. Ecosystem flux measurements of chemically-speciated non-refractory PM1 were made over two contrasting land uses in the Malaysian state of Sabah, on the island of Borneo during 2008. A high-resolution time-of-flight aerosol mass spectrometer (HR-ToF-AMS) was deployed at the Global Atmospheric Watch (GAW) site at a tropical rain forest location as well as the Sabahmas (PPB OIL) oil palm plantation near Lahad Datu, in Eastern Sabah, as a collaboration between three UK NERC funded projects (OP3, APPRAISE/ACES and DIASPORA). Recent technical developments using ToF detectors allow us to record 10 Hz full mass spectra at both high resolution (HR) and unit-mass resolution (UMR), suitable for the calculation of local eddy-covariance fluxes. The measurements provide information on the deposition rate of anthropogenic aerosol components (e.g. sulphate, nitrate, ammonium and hydrocarbon-like aerosol) to tropical forest and oil palm. At the same time, any biogenic secondary organic aerosol components formed through fast chemistry below the measurement height would appear as an upward flux, and the direct flux measurement therefore provides an alternative approach to probing BSOA formation mechanisms. In particular, through the calculation of mass spectra in terms of flux and deposition velocity those masses and aerosol fragments can be identified that show similar behaviour. In addition, the contribution of the various chemical species (e.g. nitrate, sulphate, OA sub-types) to the total mass flux will be elucidated.

Speciation dynamics in the SE Asian tropics: Putting a time perspective on the phylogeny and biogeography of Sundaland tree squirrels, Sundasciurus.

PubMed

den Tex, Robert-Jan; Thorington, Richard; Maldonado, Jesus E; Leonard, Jennifer A

2010-05-01

Tropical rainforests are well known for their extraordinarily high levels of biodiversity. The origin of this species richness is still debated. For instance, the museum hypothesis states that over evolutionary time more and more species will accumulate with relatively few extinctions. In contrast, the Pleistocene diversification model argues that during the last 2 million years, climatic factors (glaciations) caused environmental changes that drove isolation and vicariant speciation events. In this study, we construct a molecular phylogeny of the Sundaland (Malay Peninsula, Sumata, Borneo, Palawan) and Greater Mindanao (Mindanao, Samar, Leyte) tree squirrels (genus Sundasciurus). Our results show that most speciation events in this forest dependent taxon occurred before the Pleistocene and that even the timing of intra-specific splits among populations from different landmasses are relatively old. Additionally, we found unexpectedly high divergence within and between highland populations of S. tenuis on Sumatra and the Malay Peninsula, highlighting the importance of Pliocene events in both speciation and within species divergences in this region. Copyright 2010 Elsevier Inc. All rights reserved.

Mutualism between tree shrews and pitcher plants: perspectives and avenues for future research.

PubMed

Clarke, Charles; Moran, Jonathan A; Chin, Lijin

2010-10-01

Three species of Nepenthes pitcher plants from Borneo engage in a mutualistic interaction with mountain tree shrews, the basis of which is the exchange of nutritional resources. The plants produce modified "toilet pitchers" that produce copious amounts of exudates, the latter serving as a food source for tree shrews. The exudates are only accessible to the tree shrews when they position their hindquarters over the pitcher orifice. Tree shrews mark valuable resources with faeces and regularly defecate into the pitchers when they visit them to feed. Faeces represent a valuable source of nitrogen for these Nepenthes species, but there are many facets of the mutualism that are yet to be investigated. These include, but are not limited to, seasonal variation in exudate production rates by the plants, behavioral ecology of visiting tree shrews, and the mechanism by which the plants signal to tree shrews that their pitchers represent a food source. Further research into this extraordinary animal-plant interaction is required to gain a better understanding of the benefits to the participating species. © 2010 Landes Bioscience

Land-sharing versus land-sparing logging: reconciling timber extraction with biodiversity conservation.

PubMed

Edwards, David P; Gilroy, James J; Woodcock, Paul; Edwards, Felicity A; Larsen, Trond H; Andrews, David J R; Derhé, Mia A; Docherty, Teegan D S; Hsu, Wayne W; Mitchell, Simon L; Ota, Takahiro; Williams, Leah J; Laurance, William F; Hamer, Keith C; Wilcove, David S

2014-01-01

Selective logging is a major driver of rainforest degradation across the tropics. Two competing logging strategies are proposed to meet timber demands with the least impact on biodiversity: land sharing, which combines timber extraction with biodiversity protection across the concession; and land sparing, in which higher intensity logging is combined with the protection of intact primary forest reserves. We evaluate these strategies by comparing the abundances and species richness of birds, dung beetles and ants in Borneo, using a protocol that allows us to control for both timber yield and net profit across strategies. Within each taxonomic group, more species had higher abundances with land-sparing than land-sharing logging, and this translated into significantly higher species richness within land-sparing concessions. Our results are similar when focusing only on species found in primary forest and restricted in range to Sundaland, and they are independent of the scale of sampling. For each taxonomic group, land-sparing logging was the most promising strategy for maximizing the biological value of logging operations. © 2013 John Wiley & Sons Ltd.

Studies on malaria and Anopheles balabacensis in Cambodia

PubMed Central

Eyles, Don E.; Wharton, R. H.; Cheong, W. H.; Warren, McWilson

1964-01-01

During the past few years Anopheles balabacensis has come to be recognized as a very important human malaria vector in Thailand and the Indochinese area, but little has been published on its bionomics except from North Borneo. Studies of the feeding habits of A. balabacensis in Cambodia showed it to be predominantly a forest mosquito. It was readily attracted to monkeys in the forest canopy but also readily attacked man on the ground. Very few of this species were attracted to domestic animals. Malaria infections were found more frequently in mosquitos captured in villages, but a significant number were infected from the forest beyond flight range of human habitation. The human population showed a high percentage of persons infected with malaria, Plasmodium falciparum predominating. Cambodian monkeys were found also to be infected with P. cynomolgi. Although none of thirteen monkeys injected with sporozoites from wild-caught mosquitos came down with malaria, it was concluded that A. balabacensis probably was the vector of both human and monkey malaria and that the risk of cross-infection was considerable if monkey malarias infective to man exist in the area. PMID:14122444

Utility of COX1 phylogenetics to differentiate between locally acquired and imported Plasmodium knowlesi infections in Singapore

PubMed Central

Loh, Jin Phang; Gao, Qiu Han Christine; Lee, Vernon J; Tetteh, Kevin; Drakeley, Chris

2016-01-01

INTRODUCTION Although there have been several phylogenetic studies on Plasmodium knowlesi (P. knowlesi), only cytochrome c oxidase subunit 1 (COX1) gene analysis has shown some geographical differentiation between the isolates of different countries. METHODS Phylogenetic analysis of locally acquired P. knowlesi infections, based on circumsporozoite, small subunit ribosomal ribonucleic acid (SSU rRNA), merozoite surface protein 1 and COX1 gene targets, was performed. The results were compared with the published sequences of regional isolates from Malaysia and Thailand. RESULTS Phylogenetic analysis of the circumsporozoite, SSU rRNA and merozoite surface protein 1 gene sequences for regional P. knowlesi isolates showed no obvious differentiation that could be attributed to their geographical origin. However, COX1 gene analysis showed that it was possible to differentiate between Singapore-acquired P. knowlesi infections and P. knowlesi infections from Peninsular Malaysia and Sarawak, Borneo, Malaysia. CONCLUSION The ability to differentiate between locally acquired P. knowlesi infections and imported P. knowlesi infections has important utility for the monitoring of P. knowlesi malaria control programmes in Singapore. PMID:26805667

Producer farmer’s sovereignty in dry land and swamps areas

NASA Astrophysics Data System (ADS)

Suhaeti, RN; Wahyuni, S.

2018-01-01

Farmers could perform their farming if they have sovereignty on their farming production inputs and marketing. Suboptimal land, such as dry land and swamps areas have good prospect if applying appropriate technologies. A research in 2015, on status of farmers’ sovereignty, had been conducted in Piani and North Candi Laras Subdistricts, Tapin District, South Borneo Province, representing swamp land and dry land respectively. Data and information were obtained through interviewing related agencies at provincial and district levels and 30 units of farmer’s households. The primary and secondary data were analyzed descriptively. The research results showed that farmers in swamps and dry land were categorized as large farmers and had sovereignty over the land and production. Water shortage and excessive in both land types could be overcome by giving access on appropriate technology such as programs making farmers improve their farming techniques and providing levees. In addition, land certification program, farming expansion and constructing new irrigated lowland were also some efforts to improve farmers’ sovereignty. It was crucial to identify and improve farmer’s sovereignty indicators through research in larger sites and samples.

First integrative trend analysis for a great ape species in Borneo.

PubMed

Santika, Truly; Ancrenaz, Marc; Wilson, Kerrie A; Spehar, Stephanie; Abram, Nicola; Banes, Graham L; Campbell-Smith, Gail; Curran, Lisa; d'Arcy, Laura; Delgado, Roberto A; Erman, Andi; Goossens, Benoit; Hartanto, Herlina; Houghton, Max; Husson, Simon J; Kühl, Hjalmar S; Lackman, Isabelle; Leiman, Ashley; Llano Sanchez, Karmele; Makinuddin, Niel; Marshall, Andrew J; Meididit, Ari; Mengersen, Kerrie; Musnanda; Nardiyono; Nurcahyo, Anton; Odom, Kisar; Panda, Adventus; Prasetyo, Didik; Purnomo; Rafiastanto, Andjar; Raharjo, Slamet; Ratnasari, Dessy; Russon, Anne E; Santana, Adi H; Santoso, Eddy; Sapari, Iman; Sihite, Jamartin; Suyoko, Ahmat; Tjiu, Albertus; Utami-Atmoko, Sri Suci; van Schaik, Carel P; Voigt, Maria; Wells, Jessie; Wich, Serge A; Willems, Erik P; Meijaard, Erik

2017-07-07

For many threatened species the rate and drivers of population decline are difficult to assess accurately: species' surveys are typically restricted to small geographic areas, are conducted over short time periods, and employ a wide range of survey protocols. We addressed methodological challenges for assessing change in the abundance of an endangered species. We applied novel methods for integrating field and interview survey data for the critically endangered Bornean orangutan (Pongo pygmaeus), allowing a deeper understanding of the species' persistence through time. Our analysis revealed that Bornean orangutan populations have declined at a rate of 25% over the last 10 years. Survival rates of the species are lowest in areas with intermediate rainfall, where complex interrelations between soil fertility, agricultural productivity, and human settlement patterns influence persistence. These areas also have highest threats from human-wildlife conflict. Survival rates are further positively associated with forest extent, but are lower in areas where surrounding forest has been recently converted to industrial agriculture. Our study highlights the urgency of determining specific management interventions needed in different locations to counter the trend of decline and its associated drivers.

Utility of COX1 phylogenetics to differentiate between locally acquired and imported Plasmodium knowlesi infections in Singapore.

PubMed

Loh, Jin Phang; Gao, Qiu Han Christine; Lee, Vernon J; Tetteh, Kevin; Drakeley, Chris

2016-12-01

Although there have been several phylogenetic studies on Plasmodium knowlesi (P. knowlesi), only cytochrome c oxidase subunit 1 (COX1) gene analysis has shown some geographical differentiation between the isolates of different countries. Phylogenetic analysis of locally acquired P. knowlesi infections, based on circumsporozoite, small subunit ribosomal ribonucleic acid (SSU rRNA), merozoite surface protein 1 and COX1 gene targets, was performed. The results were compared with the published sequences of regional isolates from Malaysia and Thailand. Phylogenetic analysis of the circumsporozoite, SSU rRNA and merozoite surface protein 1 gene sequences for regional P. knowlesi isolates showed no obvious differentiation that could be attributed to their geographical origin. However, COX1 gene analysis showed that it was possible to differentiate between Singapore-acquired P. knowlesi infections and P. knowlesi infections from Peninsular Malaysia and Sarawak, Borneo, Malaysia. The ability to differentiate between locally acquired P. knowlesi infections and imported P. knowlesi infections has important utility for the monitoring of P. knowlesi malaria control programmes in Singapore. Copyright: © Singapore Medical Association

Precipitation variability in East Timor during Younger Dryas

NASA Astrophysics Data System (ADS)

Chen, J.; Shen, C.; Mii, H.; Sone, T.; Lin, Y.; Chen, Y.

2012-12-01

Here we present a δ18O record of stalagmite collected from Lekiraka cave, East Timor ( 8o47'10.8"S, 126o23'31.1"E; 626 m above sea level). This stalagmite stable oxygen isotope record, covering an age interval of 13.5-10.8 thousand years ago (ka, before 1950 AD) by an age model using 230Th dates. Featured with an increasing precipitation trend during Younger Dryas (YD), this record is similar to the Gunung Buda cave record in Borneo(Partin et al., Nature, 2007, 449, 452-455) and Liang Luar cave record from Flores(Griffiths et al., Nature Geosciences, 2009, 2, 636-639). However, the detailed YD precipitation variability in Lekiraka record is not completely consistent with that in the nearby Liang Luar record with a precipitation maximum at ~12.4 ka. We propose the intensified precipitation in YD period was attributed to an enhanced Australian-Indonesian summer monsoon and was responded to sea level rise and a southward shift of Intertropical Convergence Zone (ITCZ), which was driven by oceanic/atmospheric circulation change originally from the North Atlantic at the YD.

Redescription and resurrection of Bertiella satyri (Cestoda, Anoplocephalidae) parasitizing the orangutan (Pongo abelii) in Indonesia.

PubMed

Foitová, Ivona; Mašová, Sárka; Tenora, František; Koubková, Božena; Hodová, Iveta; Vyskočilová, Martina; Baruš, Vlastimil; Nurcahyo, Wisnu

2011-09-01

The tapeworm species Bertiella satyri from a semi-wild Sumatran orangutan (Pongo abelii: Ponginae) is redescribed and the sequence of its 18S rDNA is presented. The tapeworms parasitizing the genera Pan, Pongo, Homo and Hylobates from Muséum National d'Histoire Naturelle, Paris and from Muséum d´Histoire Naturelle, Genève are also presented. The validity of B. satyri is confirmed. B. satyri (BSA) differs from the most similar species Bertiella studeri (BSTU) in the following characteristics: (1) testes number, BSTU 300-400; BSA 116-124, (2) genital opening, BSTU regularly alternate; BSA irregularly alternate, (3) Cirrus-sac, BSTU short, 0.250-0.320, does not reach excretory ducts; BSA long, 0.630 × 0.495, reaches excretory ducts, (4) egg size, BSTU 0.053-0.060; BSA 0.030-0.051, (5) host BSTU Pan troglodytes, Africa; BSA Pongo pygmaeus, P. abelii, Indonesia (Borneo, Sumatra). Both species differ according to our material and the name B. satyri (Blanchard, 1891) is resurrected.

Creative Conservation Communication

NASA Astrophysics Data System (ADS)

Houston, Jason

2015-04-01

I am a fellow with the International League of Conservation photographers (iLCP) and have been focused on photographing conservation dynamics at the intersection of social and environmental issues for a decade. Subjects have included traditional concerns such as deforestation, water conservation, endangered species, and fisheries. However, I rarely make photographs of the traditional nature, wildlife, landscapes, or environmental atrocities that most people think of when they think about environmentalism. Instead, I photograph people and how they live on the planet, as I believe passionately that without also considering social and cultural concerns, we will not be able to effectively and sustainably do conservation work or achieve positive environmental change. My presentation will share recent photography projects on forest conservation in Indonesian Borneo and fisheries management in Central America where I used a 'stakeholder profile-based' process to broadly survey the complexity of the issues while also making personal connections for these projects' diverse audiences. Through these case studies I will explore the opportunities and challenges of combining the authenticity, accuracy, and scientific validity of journalistic and documentary work with the emotional impact of the conventions of art and storytelling.

A New Species of Simulium (Gomphostilbia) (Diptera: Simuliidae) From Kalimantan, Indonesia, With Keys to Identify 19 Bornean Species of the Subgenus Gomphostilbia.

PubMed

Takaoka, Hiroyuki; Sofian-Azirun, Mohd; Ya'cob, Zubaidah; Chen, Chee Dhang; Low, Van Lun; Harmonis

2016-07-01

A new simuliid species, Simulium kalimantanense sp. nov., is described on the basis of females, males, pupae, and mature larvae from East Kalimantan, Indonesia, and is assigned to the Simulium banauense species-group of Simulium (Gomphostilbia). This new species has close similarities to S alienigenum Takaoka from the Philippines, in many characters including the adult antennal color pattern and pupal gill with four long filaments arranged in two pairs each bearing a long stalk, but is distinguished from the latter in the female by the longer sensory vesicle and in the pupa by the gill with an elongate common basal stalk. Simulium kalimantanense sp. nov. is the first member of the S. banauense group in Borneo, and marks the most southerly distribution of the group. Keys to identify 19 Bornean species of the subgenus Gomphostilbia are provided. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Sulu-Celebes-Banda basins: a trapped piece of Cretaceous to Eocene oceanic crust

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCabe, R.J.; Hilde, T.W.; Cole, J.T.

1986-07-01

The Sulu-Celebes-Banda basin is composed of three poorly understood marginal basins located between northwest Australia and southeast Asia. Recent studies have proposed that these three basins are remnants of once-continuous ocean basin. The on-land geology of this region is complicated. However, numerous stratigraphic and paleomagnetic studies on pre-Oligocene rocks are consistent with the interpretation that older landmasses presently dissecting the basin were translated into their present position during the middle to late Tertiary. Paleomagnetic data from the Philippines suggest that the Philippine arc is a composite of Early Cretaceous to Holocene arcs that were translated clockwise and from the southeast.more » Paleomagnetic and stratigraphic data from Kalimantan and Sulawesi suggest that these landmasses share a common origin and that Sulawesi was rifted eastward off of Borneo during the late Tertiary. Stratigraphic studies from the Sula microcontinent, Buru, Ceram, and Timor show close correlation to the stratigraphy of northwest Australia or New Guinea. In addition, paleomagnetic studies from Timor suggest that a portion of the island was part of Australia since the early Mesozoic.« less

Relocatable dense medium coal preparation plants for Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lamb, R.

1994-12-31

The major recent coal mine developments in Indonesia have been situated along the east coast of Kalimantan (Borneo). Design and construction in these remote areas require a high level of innovation and ingenuity to ensure that the plants can be brought on line effectively. This paper describes the design, installation, and operation of two relocatable modular dense medium plants. The plants were specifically built to overcome the difficulties of remote areas and can be assembled by a semi-skilled workforce. The two relocatable dense medium coal preparation plants recently built for mines in Kalimantan are unique in that the plants weremore » fabricated, preassembled, and wet-commissioned in Brisbane, Australia, before shipment to Indonesia. The plants are a 3OO t/h dense medium bath, cyclone, and spirals plant and a 250 t/h dense medium cyclone and spirals with reject and tailings co-disposal. The relocatable plant concept has enabled a low capital cost per ton per hour and an extremely fast construction timetable-20 weeks from contract award to completion of wet-commissioning for shipment to Indonesia.« less

Metal concentrations in sediments from tourist beaches of Miri City, Sarawak, Malaysia (Borneo Island).

PubMed

Nagarajan, R; Jonathan, M P; Roy, Priyadarsi D; Wai-Hwa, L; Prasanna, M V; Sarkar, S K; Navarrete-López, M

2013-08-15

Forty-three sediment samples were collected from the beaches of Miri City, Sarawak, Malaysia to identify the enrichment of partially leached trace metals (PLTMs) from six different tourist beaches. The samples were analyzed for PLTMs Fe, Mn, Cr, Co, Cu, Ni, Pb, Sr and Zn. The concentration pattern suggest that the southern side of the study area is enriched with Fe (1821-6097 μg g(-1)), Mn (11.57-90.22 μg g(-1)), Cr (51.50-311 μg g(-1)), Ni (18-51 μg g(-1)), Pb (8.81-84.05 μg g(-1)), Sr (25.95-140.49 μg g(-1)) and Zn (12.46-35.04 μg g(-1)). Compared to the eco-toxicological values, Cr>Effects range low (ERL), Lowest effect level (LEL), Severe effect level (SEL); Cu>Unpolluted sediments, ERL, LEL; Pb>Unpolluted sediments and Ni>ERL and LEL. Comparative results with other regions indicate that Co, Cr, Cu, Ni and Zn are higher, indicating an external input rather than natural process. Copyright © 2013 Elsevier Ltd. All rights reserved.

Increased losses of organic carbon and destabilising of tropical peatlands following deforestation, drainage and burning. (Invited)

NASA Astrophysics Data System (ADS)

Moore, S.; Gauci, V.; Evans, C.; Page, S. E.

2013-12-01

Tropical peatlands contain one of the largest pools of terrestrial organic carbon, amounting to about 89,000 teragrams. Approximately 65% of this carbon store is in Indonesia, where extensive anthropogenic degradation in the form of deforestation, drainage and associated fire is converting it into a globally significant source of atmospheric carbon dioxide. Unlike boreal and temperate forests and higher-latitude wetlands, however, the loss of fluvial organic carbon from tropical peats has yet to be fully quantified. Here, we present the first data from intact and degraded peat swamp forest (PSF) catchments in Central Kalimantan, Borneo, that indicate a doubling of fluvial organic carbon losses from tropical peatlands following deforestation and drainage. Through carbon-14 dating of dissolved organic carbon (DO14C), we find that leaching of DOC from intact PSF is derived mainly from recent primary production. In contrast, DOC from disturbed PSF consists mostly of much older carbon from deep within the peat column. When we include this fluvial carbon loss, which is often ignored in peatland carbon budgets, we find that it increases the estimate of total carbon lost from the disturbed peatlands in our study by 22%. We further estimate that since 1990, peatland disturbance has resulted in a 32% increase in fluvial organic carbon flux from Southeast Asia - an increase that equates to more than half of the entire annual fluvial organic carbon flux from all European peatlands. Finally, we monitored fluvial organic carbon fluxes following large-scale peatland fires in 2009/10 within the study sub-catchments and found fluvial carbon fluxes to be 30-70% larger in the fire-affected catchments when compared to fluxes during the same interval in the previous year (pre-fire). This is in marked contrast to the intact catchment (control/no fire) where there were no differences observed in fluxes 'pre to post fire years'. Our sub-catchment findings were also found to be representative at a larger river basin scale and we estimate the fluvial carbon flux from the Sebangau River basin (5,200 km2) to the Java Sea to be 0.58 Tg year-1. This is a 25% increase on the flux calculated for the River Sebangau the preceding year (pre-fire; 0.46 Tg). These new data are the first to demonstrate a large and sustained pulse of fluvial carbon following large scale human-induced fires in carbon rich tropical PSF. (L) Undisturbed PSF, (R) Disturbed PSF Borneo study sites and land-cover class properties Area = area of each catchment (PSF1 = intact, PSF2 & PSF3 = disturbed). Rainfall = total annual. Total annual discharge = standardized by area. TOC concentrations & fluxes = mean × standard error of site means.

The dynamics of fire regimes in tropical peatlands in Central Kalimantan, Borneo

NASA Astrophysics Data System (ADS)

Hoscilo, Agata; Page, Susan; Tansey, Kevin

2010-05-01

As a carbon-rich ecosystem, tropical peatland contributes significantly to terrestrial carbon storage and stability of the global carbon cycle. Vast areas of tropical peatland in SE Asia are degraded by the increasingly intensive scale of human activities, illustrated by high rates of deforestation, poor land-use management, selective illegal logging, and frequently repeated fires. Analysis of time-series satellite images performed in this study confirmed that fire regimes have dramatically changed in tropical peatlands over the last three decades (1973-2005). The study was conducted in the southern part of Central Kalimantan (Indonesian Borneo). We found that there was an evident increase in fire frequency and a decline in the fire return interval after implementation of the Mega Rice Project (1997-2005). Up until 1997, fires had affected a relatively small area, in total 23% of the study area, and were largely related to land clearance. This situation changed significantly during the last decade (1997-2005), when the widespread, intensive fires of 1997 affected a much larger area. Five years later, in 2002, extensive fires returned, affecting again 22% of the study area. Then, in 2004 and 2005, a further large area of peatland was on fire. Fire frequency analysis showed that during the period 1997-2005, around 45% of the study area was subject to multiple fires, with 37% burnt twice and 8% burnt three or more times. Near-annual occurrence of fire events reduces the rate and nature of vegetation regrowth. Hence, we observed a shift in the fire fuel type and amount over the period of investigation. After 1997, the fire fuel shifted from mainly peat swamp forest biomass towards non-woody biomass, dominated by regenerating vegetation, mainly ferns and a few trees. This secondary vegetation has been shown to be fire prone, although fire propagation is slower than in forest and restricted by both low fuel quality and load. Furthermore, we investigated the interaction between human impacts and presence and extent of fires. We found that the majority of fire events were directly or indirectly associated with human activities (i.e. selective logging, land clearance, intensive drainage and transmigration re-settlement). The intensive drainage infrastructure associated with the Mega Rice Project initiative greatly impaired the peatland hydrological system, increasing the risk of fire. In addition, the network of canals allowed easy access for people whose activities provided ignition sources. Hence, multiple fires were located within close proximity to canals and declined with distance away from canals. These results emphasise the vulnerability of degraded tropical peatlands to fire and confirm that widespread and intensive fires have become an integral part of tropical peatland ecosystem and are now associated with most dry seasons.

Plasmodium knowlesi in travellers, update 2014.

PubMed

Müller, Mattia; Schlagenhauf, Patricia

2014-05-01

Since the initial discovery of Plasmodium knowlesi in Malaysia, cases have been reported from several neighbouring countries. Tourism has also resulted in an increasing number of cases diagnosed in Europe, America, and Oceania. In this review we focus on the risk of the travel-associated acquisition of P. knowlesi malaria. A search of the literature in PubMed was carried out to identify articles and literature on the distribution of P. knowlesi infections in Southeast Asia and details of its acquisition and importation by travellers to other continents. The cut-off date for the search was December 1, 2013. Search words used were: "Plasmodium knowlesi", "Plasmodium knowlesi infections", "Plasmodium knowlesi travellers", "Plasmodium knowlesi prevalence", "Plasmodium knowlesi host", "Plasmodium knowlesi vector" "Plasmodium knowlesi RDT", and "Plasmodium knowlesi Malaysia". Traveller numbers to Malaysia were obtained from the Tourism Malaysia website. A total of 103 articles were found. Using a selection of these and others identified from the reference lists of the papers, we based our review on a total of 66 articles. P. knowlesi malaria appears to be the most common malaria species in Malaysian Borneo and is also widely distributed on the Malaysian mainland. Furthermore, locally transmitted cases of P. knowlesi malaria have been reported in Thailand, the Philippines, Vietnam, Singapore, Myanmar, Indonesian Borneo, and Cambodia. Two cases have been reported from non-endemic countries in Asia (Japan and Taiwan) in people with a history of travel to Malaysia and the Philippines. Twelve cases were imported to their home countries by travellers from other continents: two from the USA, two from the Netherlands, two from Germany, and one each from Spain, France, Sweden, Finland, Australia, and New Zealand. In most cases, the infection was associated with a trip to or near forested areas. The symptoms were fever (n=12), headache (n=6), chills (n=6), nausea (n=4), myalgia (n=3), back pain (n=3), abdominal problems (n=1), anorexia (n=2), fatigue (n=2), malaise (n=1), arthralgia (n=1), sore throat (n=1) vomiting (n=2), and jaundice (n=1). All patients were treated successfully with currently available antimalaria treatments. The identification of the pathogen by microscopy can be problematic due to the morphological similarity of P. knowlesi to Plasmodium malariae. P. knowlesi appears to be a threat not only to the local population in Malaysia, but also to the estimated 25 million annual tourists and occupational travellers to Malaysia, especially those who visit rural, forested areas of the country. The P. knowlesi risk is not limited to Malaysia, and travellers from Southeast Asia presenting with possible malaria should be considered for a diagnostic work-up that includes P. knowlesi. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

On the relationships between leaf-litter lignin and net primary productivity in tropical rain forests.

PubMed

Kitayama, Kanehiro; Suzuki, Shizuo; Hori, Masato; Takyu, Masaaki; Aiba, Shin-Ichiro; Majalap-Lee, Noreen; Kikuzawa, Kihachiro

2004-07-01

We investigated if tropical rainforest trees produced more-lignified leaves in less productive environments using forests on Mount Kinabalu, Borneo. Our investigation was based on two earlier suggestions that slower litter decomposition occurs under less productive forests and that trees under resource limitation invest a large amount of carbon as lignin as a defense substance to minimize the loss from herbivores. When nine forests at different altitudes (700-3100 m) and soil conditions (derived from sedimentary or ultrabasic rocks) but with the same gentle relief position were compared, the concentrations of leaf-litter lignin were positively correlated with litterfall rates and leaf-litter nitrogen concentrations. These patterns would be reinforced in intact leaves if the effects of resorption at the time of leaf shedding were taken into account, because greater magnitude of resorption of mobile elements but not of lignin would occur in less productive environments (i.e. dilution of lignin in intact leaves). These results did not support earlier suggestions to explain the variation of leaf-litter lignin. Instead, we suggest that lower lignin contents are adaptive to recycle minerals without retarding decomposition in less productive environments.

Nickel biopathways in tropical nickel hyperaccumulating trees from Sabah (Malaysia)

NASA Astrophysics Data System (ADS)

van der Ent, Antony; Callahan, Damien L.; Noller, Barry N.; Mesjasz-Przybylowicz, Jolanta; Przybylowicz, Wojciech J.; Barnabas, Alban; Harris, Hugh H.

2017-02-01

The extraordinary level of accumulation of nickel (Ni) in hyperaccumulator plants is a consequence of specific metal sequestering and transport mechanisms, and knowledge of these processes is critical for advancing an understanding of transition element metabolic regulation in these plants. The Ni biopathways were elucidated in three plant species, Phyllanthus balgooyi, Phyllanthus securinegioides (Phyllanthaceae) and Rinorea bengalensis (Violaceae), that occur in Sabah (Malaysia) on the Island of Borneo. This study showed that Ni is mainly concentrated in the phloem in roots and stems (up to 16.9% Ni in phloem sap in Phyllanthus balgooyi) in all three species. However, the species differ in their leaves - in P. balgooyi the highest Ni concentration is in the phloem, but in P. securinegioides and R. bengalensis in the epidermis and in the spongy mesophyll (R. bengalensis). The chemical speciation of Ni2+ does not substantially differ between the species nor between the plant tissues and transport fluids, and is unambiguously associated with citrate. This study combines ion microbeam (PIXE and RBS) and metabolomics techniques (GC-MS, LC-MS) with synchrotron methods (XAS) to overcome the drawbacks of the individual techniques to quantitatively determine Ni distribution and Ni2+ chemical speciation in hyperaccumulator plants.

Anthropogenic and Climatic Influence on Vegetation Fires in Peatland of Insular Southeast Asia

NASA Astrophysics Data System (ADS)

Liew, S.; Miettinen, J.; Salinas Cortijo, S. V.

2011-12-01

Fire is traditionally used as a tool in land clearing by farmers and shifting cultivators in Southeast Asia. However, the small scale clearing of land is increasingly being replaced by modern large-scale conversion of forests into plantations/agricultural land, usually also by fires. Fires get out of control in periods of extreme drought, especially during the El Nino periods, resulting in severe episodes of transboundary air pollution in the form of smoke haze. We use the MODIS active fires product (hotspots) to establish correlations between the temporal and spatial patterns of vegetation fires with climatic variables, land cover change and soil type (peat or non-peat) in the western part of Insular Southeast Asia for a decade from 2001 to 2010. Fire occurrence exhibits a negative correlation with rainfall, and is more severe overall during the El-Nino periods. However, not all regions are equally affected by El-Nino. In Southern Sumatra and Southern Borneo the correlation with El-Nino is high. However, fires in some regions such as the peatland in Riau, Jambi and Sarawak do not appear to be influenced by El-Nino. These regions are also experiencing rapid conversion of forest to large scale plantations.

Modeling of larch forest dynamics under a changing climate in eastern Siberia

NASA Astrophysics Data System (ADS)

Nakai, T.; Kumagai, T.; Iijima, Y.; Ohta, T.; Kotani, A.; Maximov, T. C.; Hiyama, T.

2017-12-01

According to the projection by an earth system model under RCP8.5 scenario, boreal forest in eastern Siberia (near Yakutsk) is predicted to experience significant changes in climate, in which the mean annual air temperature is projected to be positive and the annual precipitation will be doubled by the end of 21st century. Since the forest in this region is underlain by continuous permafrost, both increasing temperature and precipitation can affect the dynamics of forest through the soil water processes. To investigate such effects, we adopted a newly developed terrestrial ecosystem dynamics model named S-TEDy (SEIB-DGVM-originated Terrestrial Ecosystem Dynamics model), which mechanistically simulates "the way of life" of each individual tree and resulting tree mortality under the future climate conditions. This model was first developed for the simulation of the dynamics of a tropical rainforest in the Borneo Island, and successfully reproduced higher mortality of large trees due to a prolonged drought induced by ENSO event of 1997-1998. To apply this model to a larch forest in eastern Siberia, we are developing a soil submodel to consider the effect of thawing-freezing processes. We will present a simulation results using the future climate projection.

Tree shrew lavatories: a novel nitrogen sequestration strategy in a tropical pitcher plant.

PubMed

Clarke, Charles M; Bauer, Ulrike; Lee, Ch'ien C; Tuen, Andrew A; Rembold, Katja; Moran, Jonathan A

2009-10-23

Nepenthes pitcher plants are typically carnivorous, producing pitchers with varying combinations of epicuticular wax crystals, viscoelastic fluids and slippery peristomes to trap arthropod prey, especially ants. However, ant densities are low in tropical montane habitats, thereby limiting the potential benefits of the carnivorous syndrome. Nepenthes lowii, a montane species from Borneo, produces two types of pitchers that differ greatly in form and function. Pitchers produced by immature plants conform to the 'typical' Nepenthes pattern, catching arthropod prey. However, pitchers produced by mature N. lowii plants lack the features associated with carnivory and are instead visited by tree shrews, which defaecate into them after feeding on exudates that accumulate on the pitcher lid. We tested the hypothesis that tree shrew faeces represent a significant nitrogen (N) source for N. lowii, finding that it accounts for between 57 and 100 per cent of foliar N in mature N. lowii plants. Thus, N. lowii employs a diversified N sequestration strategy, gaining access to a N source that is not available to sympatric congeners. The interaction between N. lowii and tree shrews appears to be a mutualism based on the exchange of food sources that are scarce in their montane habitat.

DNA Barcoding Reveals High Cryptic Diversity of the Freshwater Halfbeak Genus Hemirhamphodon from Sundaland

PubMed Central

Zainal Abidin, Muchlisin; Pulungan, Chaidir Parlindungan

2016-01-01

DNA barcoding of the cytochrome oxidase subunit I (COI) gene was utilized to assess the species diversity of the freshwater halfbeak genus Hemirhamphodon. A total of 201 individuals from 46 locations in Peninsular Malaysia, north Borneo (Sarawak) and Sumatra were successfully amplified for 616 base pairs of the COI gene revealing 231 variable and 213 parsimony informative sites. COI gene trees showed that most recognized species form monophyletic clades with high bootstrap support. Pairwise within species comparisons exhibited a wide range of intraspecific diversity from 0.0% to 14.8%, suggesting presence of cryptic diversity. This finding was further supported by barcode gap analysis, ABGD and the constructed COI gene trees. In particular, H. pogonognathus from Kelantan (northeast Peninsular Malaysia) diverged from the other H. pogonognathus groups with distances ranging from 7.8 to 11.8%, exceeding the nearest neighbor taxon. High intraspecific diversity was also observed in H. byssus and H. kuekanthali, but of a lower magnitude. This study also provides insights into endemism and phylogeographic structuring, and limited support for the Paleo-drainage divergence hypothesis as a driver of speciation in the genus Hemirhamphodon. PMID:27657915

Phenolic acid composition and antioxidant properties of Malaysian honeys.

PubMed

Khalil, M I; Alam, N; Moniruzzaman, M; Sulaiman, S A; Gan, S H

2011-08-01

The phenolic acid and flavonoid contents of Malaysian Tualang, Gelam, and Borneo tropical honeys were compared to those of Manuka honey. Ferric reducing/antioxidant power assay (FRAP) and the 1,1-diphenyl-2-picryl-hydrazyl (DPPH) radical-scavenging activities were also quantified. All honey extracts exhibited high phenolic contents (15.21 ± 0.51- 42.23 ± 0.64 mg/kg), flavonoid contents (11.52 ± 0.27- 25.31 ± 0.37 mg/kg), FRAP values (892.15 ± 4.97- 363.38 ± 10.57 μM Fe[II]/kg), and high IC₅₀ of DPPH radical-scavenging activities (5.24 ± 0.40- 17.51 ± 0.51 mg/mL). Total of 6 phenolic acids (gallic, syringic, benzoic, trans-cinnamic, p-coumaric, and caffeic acids) and 5 flavonoids (catechin, kaempferol, naringenin, luteolin, and apigenin) were identified. Among the Malaysian honey samples, Tualang honey had the highest contents of phenolics, and flavonoids, and DPPH radical-scavenging activities. We conclude that among Malaysian honey samples, Tualang honey is the richest in phenolic acids, and flavonoid compounds, which have strong free radical-scavenging activities. © 2011 Institute of Food Technologists®

Future malaria spatial pattern based on the potential global warming impact in South and Southeast Asia.

PubMed

Khormi, Hassan M; Kumar, Lalit

2016-11-21

We used the Model for Interdisciplinary Research on Climate-H climate model with the A2 Special Report on Emissions Scenarios for the years 2050 and 2100 and CLIMEX software for projections to illustrate the potential impact of climate change on the spatial distributions of malaria in China, India, Indochina, Indonesia, and The Philippines based on climate variables such as temperature, moisture, heat, cold and dryness. The model was calibrated using data from several knowledge domains, including geographical distribution records. The areas in which malaria has currently been detected are consistent with those showing high values of the ecoclimatic index in the CLIMEX model. The match between prediction and reality was found to be high. More than 90% of the observed malaria distribution points were associated with the currently known suitable climate conditions. Climate suitability for malaria is projected to decrease in India, southern Myanmar, southern Thailand, eastern Borneo, and the region bordering Cambodia, Malaysia and the Indonesian islands, while it is expected to increase in southern and south-eastern China and Taiwan. The climatic models for Anopheles mosquitoes presented here should be useful for malaria control, monitoring, and management, particularly considering these future climate scenarios.

Loch ness, special operations executive and the first surgeon in paradise: Robert Kenneth Wilson (26.1.1899-6.6.1969).

PubMed

Watters, David A K

2007-12-01

Lieutenant Colonel Robert Kenneth Wilson (1899-1969) was a surgeon who fought in both world wars and joined the Special Operations Executive parachuting behind enemy lines into Holland, France and Borneo, the last mission being with Australian forces (Semut II). He was an expert on firearms and gave opinion on ballistics at the Old Bailey during the 1930s. He also wrote a definitive text on automatic pistols with editions published in 1943 and 1975. He was an Edinburgh Fellow (1926), who had a practice in general surgery and gynaecology in Queen Anne Street during the 1930s. He took the famous 1934 'surgeon's photo' of the Loch Ness monster that was not admitted to be a hoax until 1994. After World War II, he became the first surgical specialist to work in the public service of the then Territory of Papua and New Guinea (1950-1956), where he wrote several papers on surgical topics. He married Gwen (1924), the daughter of Henrietta Gulliver, an Australian painter. They had two sons, Richard and Phillip. After practice he retired to Melbourne where he died of carcinoma oesophagus.

Seasonal and Spatial Dynamics of the Primary Vector of Plasmodium knowlesi within a Major Transmission Focus in Sabah, Malaysia

PubMed Central

Wong, Meng L.; Chua, Tock H.; Leong, Cherng S.; Khaw, Loke T.; Fornace, Kimberly; Wan-Sulaiman, Wan-Yusoff; William, Timothy; Drakeley, Chris; Ferguson, Heather M.; Vythilingam, Indra

2015-01-01

Background The simian malaria parasite Plasmodium knowlesi is emerging as a public health problem in Southeast Asia, particularly in Malaysian Borneo where it now accounts for the greatest burden of malaria cases and deaths. Control is hindered by limited understanding of the ecology of potential vector species. Methodology/Principal Findings We conducted a one year longitudinal study of P. knowlesi vectors in three sites within an endemic area of Sabah, Malaysia. All mosquitoes were captured using human landing catch. Anopheles mosquitoes were dissected to determine, oocyst, sporozoites and parous rate. Anopheles balabacensis is confirmed as the primary vector of. P. knowlesi (using nested PCR) in Sabah for the first time. Vector densities were significantly higher and more seasonally variable in the village than forest or small scale farming site. However An. balabacensis survival and P. knowlesi infection rates were highest in forest and small scale farm sites. Anopheles balabacensis mostly bites humans outdoors in the early evening between 1800 to 2000hrs. Conclusions/Significance This study indicates transmission is unlikely to be prevented by bednets. This combined with its high vectorial capacity poses a threat to malaria elimination programmes within the region. PMID:26448052

Population genetics of the black scar oyster, Crassostrea iredalei: repercussion of anthropogenic interference.

PubMed

Zainal Abidin, Danial Hariz; Mustaffa, Suzana; Rahim, Masazurah A; Nair, Devakie M; Naim, Darlina Md; Mohd Nor, Siti Azizah

2016-01-01

Mitochondrial cytochrome oxidase subunit I (COI) gene was utilized to assess the population genetics of the commercially important black scar oyster, Crassostrea iredalei among 11 populations throughout the west and east coasts Peninsular Malaysia and Sabah (Malaysian Borneo). Overall, populations of C. iredalei demonstrated low nucleotide diversity π (0.000-0.004) and low-to-high haplotype diversity h (0.000-0.795) levels. Genetic structuring was detected between the Peninsular Malaysia and Sabah populations as revealed by the FST analysis. However, the COI gene analyses showed minimal and non-significant (p > 0.05) population differentiation within the east and west coasts Peninsular Malaysia and Sabah regions. This was attributed to both high larval dispersal along the east and west coasts and human-driven spat translocation between the two coastlines due to C. iredalei cultivation practices. Phylogeographic relationships inferences were also conducted to further support these hypotheses. The neutrality and mismatch distribution analyses suggested that C. iredalei had experienced a/several bottleneck event(s), followed by population expansion. The molecular information obtained from this study could be incorporated in a pragmatic aquaculture management strategy of wild broodstock and the hatchery lines of C. iredalei in Malaysia.

Layout Guide for Burnt and Un-burnt Tropical Forest: The Diversity of Forest Plants and Insetcs for Sustainable Environmental

NASA Astrophysics Data System (ADS)

Watiniasih, N. L.; Tambunan, J.; Merdana, I. M.; Antara, I. N. G.

2018-04-01

Forest fire is a common phenomenon in tropical forest likes in Indonesia. Beside the effect of soaring heat and lack of rain during dry season due to the tropical climate, farming system is also reported as one reason of forest fire in Indonesia. People of surrounding areas and neighbouring countries are suffering from the effect of forest fire. Plants and animals are the most suffer from this occurrence that they cannot escape. This study aimed to investigate the effect of previously burnt and un-burnt tropical forest in Borneo Island on the plant and insect diversity of the tropical forest. The result of the study found that the plants in previously burnt forest area was dominated by one species, while higher and more stable plant diversity was found in un-burnt forest. Although the number of individual insects was higher in previously burnt tropical forest, but the insects was more diverse in un-burnt tropical forest. The alteration of environmental conditions in previously burnt and un-burnt forest indicate that the energy held in natural forest support higher number and more stable insects than previously burnt forest.

[A fifth plasmodium that can cause malaria].

PubMed

Myrvang, Bjørn

2010-02-11

Since 2004, malaria with a "fifth" plasmodium, Plasmodium knowlesi (common in macaque monkeys), has been diagnosed in a number of people in Southeast Asia. This article gives a short overview of the epidemiology, clinical picture, diagnostics and treatment of P. knowlesi infection. The article is mainly based on articles published in international journals during the last five years. Most cases have been diagnosed in the Malaysian state Sarawak on the island of Borneo. The disease usually presents in the same way as other types of malaria, with the exception that fever spikes comes at 24-hour intervals. Microscopy findings resemble those for P. malariae in the early phase of the disease and many patients have been diagnosed wrongly. Without treatment a serious clinical picture may develop, blood findings may be as serious as for P. falciparum infection and death may occur. Chloroquine tablets are indicated in light infections, while parenteral therapy with artesunate or quinine is necessary in seriously affected patients. P. knowlesi infection has been reported among tourists in Malaysia. The risk of contracting P. knowlesi infection as well as other types of malaria is low in Malaysia and other regions where P knowlesi occurs.

Tree shrew lavatories: a novel nitrogen sequestration strategy in a tropical pitcher plant

PubMed Central

Clarke, Charles M.; Bauer, Ulrike; Lee, Ch'ien C.; Tuen, Andrew A.; Rembold, Katja; Moran, Jonathan A.

2009-01-01

Nepenthes pitcher plants are typically carnivorous, producing pitchers with varying combinations of epicuticular wax crystals, viscoelastic fluids and slippery peristomes to trap arthropod prey, especially ants. However, ant densities are low in tropical montane habitats, thereby limiting the potential benefits of the carnivorous syndrome. Nepenthes lowii, a montane species from Borneo, produces two types of pitchers that differ greatly in form and function. Pitchers produced by immature plants conform to the ‘typical’ Nepenthes pattern, catching arthropod prey. However, pitchers produced by mature N. lowii plants lack the features associated with carnivory and are instead visited by tree shrews, which defaecate into them after feeding on exudates that accumulate on the pitcher lid. We tested the hypothesis that tree shrew faeces represent a significant nitrogen (N) source for N. lowii, finding that it accounts for between 57 and 100 per cent of foliar N in mature N. lowii plants. Thus, N. lowii employs a diversified N sequestration strategy, gaining access to a N source that is not available to sympatric congeners. The interaction between N. lowii and tree shrews appears to be a mutualism based on the exchange of food sources that are scarce in their montane habitat. PMID:19515656

Measuring deforestation using remote sensing and its implication for conservation in Gunung Palung National Park, West Kalimantan, Indonesia

NASA Astrophysics Data System (ADS)

Fawzi, N. I.; Husna, V. N.; Helms, J. A.

2018-05-01

Gunung Palung National Park (1,080 km2, 1°3’ – 1°22’ S, 109°54’ – 110°28’ E) was first protected in 1937 and is now one of the largest remaining primary lowland mixed dipterocarp forests on Borneo. To help inform conservation efforts, we measured forest cover change in the protected area using 11 multi-temporal Landsat series images with path/row 121/61. Annual deforestation rates have declined since measurement began in 1989, to around 68 hectares per year in 2011 and 112 hectares per year in 2017. Halting deforestation in this protected area requires to tackle its underlying economic and social causes, and find ways for communities to meet their needs without resorting to forest clearing. Community empowerment, forest rehabilitation, and health care incentives as payment for ecosystem services can help reduce deforestation in Gunung Palung National Park. This becomes a positive trend which we must continue to always work in forest conservation. Future forest monitoring will be dependency with remote sensing analysis and open source remote sensing data such as Landsat and Sentinel data remain an important data source for historical forest change monitoring.

Vulnerability to drought-induced embolism of Bornean heath and dipterocarp forest trees.

PubMed

Tyree, Melvin T.; Patiño, Sandra; Becker, Peter

1998-01-01

Occasional droughts may be important in controlling the distribution and structure of forest types in relatively aseasonal north Borneo. The low water retention capacity of the coarse, sandy soils on which tropical heath forest occurs may cause drought to develop more quickly and severely than on the finer textured soils of nearby dipterocarp forest. Resistance to drought-induced embolism is considered an important component of drought tolerance. We constructed embolism vulnerability curves relating loss in hydraulic conductivity to xylem tension by the air-injection method for understory trees of 14 species from both tropical heath and mixed dipterocarp forests in Brunei Darussalam. There was no significant difference (Mann-Whitney U-test, P = 0.11) between forest types in the xylem tension at which 50% loss of hydraulic conductivity occurred. Most species from both forest types were highly vulnerable to embolism compared with species from seasonal tropical forests. We speculate that other mechanisms, such as stomatal control to prevent development of embolism-inducing xylem tensions, are more cost-effective adaptations against occasional drought, but that the attendant reduction in productivity and competitive ability places a greater premium on resistance to embolism when drought is annual and predictable.

A large-scale forest fragmentation experiment: the Stability of Altered Forest Ecosystems Project.

PubMed

Ewers, Robert M; Didham, Raphael K; Fahrig, Lenore; Ferraz, Gonçalo; Hector, Andy; Holt, Robert D; Kapos, Valerie; Reynolds, Glen; Sinun, Waidi; Snaddon, Jake L; Turner, Edgar C

2011-11-27

Opportunities to conduct large-scale field experiments are rare, but provide a unique opportunity to reveal the complex processes that operate within natural ecosystems. Here, we review the design of existing, large-scale forest fragmentation experiments. Based on this review, we develop a design for the Stability of Altered Forest Ecosystems (SAFE) Project, a new forest fragmentation experiment to be located in the lowland tropical forests of Borneo (Sabah, Malaysia). The SAFE Project represents an advance on existing experiments in that it: (i) allows discrimination of the effects of landscape-level forest cover from patch-level processes; (ii) is designed to facilitate the unification of a wide range of data types on ecological patterns and processes that operate over a wide range of spatial scales; (iii) has greater replication than existing experiments; (iv) incorporates an experimental manipulation of riparian corridors; and (v) embeds the experimentally fragmented landscape within a wider gradient of land-use intensity than do existing projects. The SAFE Project represents an opportunity for ecologists across disciplines to participate in a large initiative designed to generate a broad understanding of the ecological impacts of tropical forest modification.

Fine-scale habitat use by orang-utans in a disturbed peat swamp forest, central Kalimantan, and implications for conservation management.

PubMed

Morrogh-Bernard, Helen C; Husson, Simon J; Harsanto, Fransiskus A; Chivers, David J

2014-01-01

This study was conducted to see how orang-utans (Pongo pygmaeus wurmbii) were coping with fine-scale habitat disturbance in a selectively logged peat swamp forest in Central Kalimantan, Borneo. Seven habitat classes were defined, and orang-utans were found to use all of these, but were selective in their preference for certain classes over others. Overall, the tall forest classes (≥20 m) were preferred. They were preferred for feeding, irrespective of canopy connectivity, whereas classes with a connected canopy (canopy cover ≥75%), irrespective of canopy height, were preferred for resting and nesting, suggesting that tall trees are preferred for feeding and connected canopy for security and protection. The smaller forest classes (≤10 m high) were least preferred and were used mainly for travelling from patch to patch. Thus, selective logging is demonstrated here to be compatible with orang-utan survival as long as large food trees and patches of primary forest remain. Logged forest, therefore, should not automatically be designated as 'degraded'. These findings have important implications for forest management, forest classification and the designation of protected areas for orang-utan conservation.

Quantifying killing of orangutans and human-orangutan conflict in Kalimantan, Indonesia.

PubMed

Meijaard, Erik; Buchori, Damayanti; Hadiprakarsa, Yokyok; Utami-Atmoko, Sri Suci; Nurcahyo, Anton; Tjiu, Albertus; Prasetyo, Didik; Nardiyono; Christie, Lenny; Ancrenaz, Marc; Abadi, Firman; Antoni, I Nyoman Gede; Armayadi, Dedy; Dinato, Adi; Ella; Gumelar, Pajar; Indrawan, Tito P; Kussaritano; Munajat, Cecep; Priyono, C Wawan Puji; Purwanto, Yadi; Puspitasari, Dewi; Putra, M Syukur Wahyu; Rahmat, Abdi; Ramadani, Harri; Sammy, Jim; Siswanto, Dedi; Syamsuri, Muhammad; Andayani, Noviar; Wu, Huanhuan; Wells, Jessie Anne; Mengersen, Kerrie

2011-01-01

Human-orangutan conflict and hunting are thought to pose a serious threat to orangutan existence in Kalimantan, the Indonesian part of Borneo. No data existed prior to the present study to substantiate these threats. We investigated the rates, spatial distribution and causes of conflict and hunting through an interview-based survey in the orangutan's range in Kalimantan, Indonesia. Between April 2008 and September 2009, we interviewed 6983 respondents in 687 villages to obtain socio-economic information, assess knowledge of local wildlife in general and orangutan encounters specifically, and to query respondents about their knowledge on orangutan conflicts and killing, and relevant laws. This survey revealed estimated killing rates of between 750 and 1800 animals killed in the last year, and between 1950 and 3100 animals killed per year on average within the lifetime of the survey respondents. These killing rates are higher than previously thought and are high enough to pose a serious threat to the continued existence of orangutans in Kalimantan. Importantly, the study contributes to our understanding of the spatial variation in threats, and the underlying causes of those threats, which can be used to facilitate the development of targeted conservation management.

Quantifying Killing of Orangutans and Human-Orangutan Conflict in Kalimantan, Indonesia

PubMed Central

Meijaard, Erik; Buchori, Damayanti; Hadiprakarsa, Yokyok; Utami-Atmoko, Sri Suci; Nurcahyo, Anton; Tjiu, Albertus; Prasetyo, Didik; Nardiyono; Christie, Lenny; Ancrenaz, Marc; Abadi, Firman; Antoni, I Nyoman Gede; Armayadi, Dedy; Dinato, Adi; Ella; Gumelar, Pajar; Indrawan, Tito P.; Kussaritano; Munajat, Cecep; Priyono, C. Wawan Puji; Purwanto, Yadi; Puspitasari, Dewi; Putra, M. Syukur Wahyu; Rahmat, Abdi; Ramadani, Harri; Sammy, Jim; Siswanto, Dedi; Syamsuri, Muhammad; Andayani, Noviar; Wu, Huanhuan; Wells, Jessie Anne; Mengersen, Kerrie

2011-01-01

Human-orangutan conflict and hunting are thought to pose a serious threat to orangutan existence in Kalimantan, the Indonesian part of Borneo. No data existed prior to the present study to substantiate these threats. We investigated the rates, spatial distribution and causes of conflict and hunting through an interview-based survey in the orangutan's range in Kalimantan, Indonesia. Between April 2008 and September 2009, we interviewed 6983 respondents in 687 villages to obtain socio-economic information, assess knowledge of local wildlife in general and orangutan encounters specifically, and to query respondents about their knowledge on orangutan conflicts and killing, and relevant laws. This survey revealed estimated killing rates of between 750 and 1800 animals killed in the last year, and between 1950 and 3100 animals killed per year on average within the lifetime of the survey respondents. These killing rates are higher than previously thought and are high enough to pose a serious threat to the continued existence of orangutans in Kalimantan. Importantly, the study contributes to our understanding of the spatial variation in threats, and the underlying causes of those threats, which can be used to facilitate the development of targeted conservation management. PMID:22096582

Human Infections and Detection of Plasmodium knowlesi

PubMed Central

Daneshvar, Cyrus

2013-01-01

SUMMARY Plasmodium knowlesi is a malaria parasite that is found in nature in long-tailed and pig-tailed macaques. Naturally acquired human infections were thought to be extremely rare until a large focus of human infections was reported in 2004 in Sarawak, Malaysian Borneo. Human infections have since been described throughout Southeast Asia, and P. knowlesi is now recognized as the fifth species of Plasmodium causing malaria in humans. The molecular, entomological, and epidemiological data indicate that human infections with P. knowlesi are not newly emergent and that knowlesi malaria is primarily a zoonosis. Human infections were undiagnosed until molecular detection methods that could distinguish P. knowlesi from the morphologically similar human malaria parasite P. malariae became available. P. knowlesi infections cause a spectrum of disease and are potentially fatal, but if detected early enough, infections in humans are readily treatable. In this review on knowlesi malaria, we describe the early studies on P. knowlesi and focus on the epidemiology, diagnosis, clinical aspects, and treatment of knowlesi malaria. We also discuss the gaps in our knowledge and the challenges that lie ahead in studying the epidemiology and pathogenesis of knowlesi malaria and in the prevention and control of this zoonotic infection. PMID:23554413

Defining habitat covariates in camera-trap based occupancy studies

PubMed Central

Niedballa, Jürgen; Sollmann, Rahel; Mohamed, Azlan bin; Bender, Johannes; Wilting, Andreas

2015-01-01

In species-habitat association studies, both the type and spatial scale of habitat covariates need to match the ecology of the focal species. We assessed the potential of high-resolution satellite imagery for generating habitat covariates using camera-trapping data from Sabah, Malaysian Borneo, within an occupancy framework. We tested the predictive power of covariates generated from satellite imagery at different resolutions and extents (focal patch sizes, 10–500 m around sample points) on estimates of occupancy patterns of six small to medium sized mammal species/species groups. High-resolution land cover information had considerably more model support for small, patchily distributed habitat features, whereas it had no advantage for large, homogeneous habitat features. A comparison of different focal patch sizes including remote sensing data and an in-situ measure showed that patches with a 50-m radius had most support for the target species. Thus, high-resolution satellite imagery proved to be particularly useful in heterogeneous landscapes, and can be used as a surrogate for certain in-situ measures, reducing field effort in logistically challenging environments. Additionally, remote sensed data provide more flexibility in defining appropriate spatial scales, which we show to impact estimates of wildlife-habitat associations. PMID:26596779

Setting up home-based palliative care in countries with limited resources: a model from Sarawak, Malaysia.

PubMed

Devi, B C R; Tang, T S; Corbex, M

2008-12-01

The provision of palliative care (PC) and opioids is difficult to ensure in remote areas in low- and middle-income countries. We describe here the set up of a home-care program in Sarawak (the Malaysian part of the Borneo Island), where half the population lives in villages that are difficult to access. The establishment of this program, initiated in 1994 by the Department of Radiotherapy of Sarawak General Hospital, consisted of training, empowering nurses, simplifying referral, facilitating access to medication, and increasing awareness among public and health professionals about PC. The program has been sustainable and cost efficient, serving 936 patients in 2006. The total morphine usage in the program increased from <200 g in 1993 to >1400 g in 2006. The results show that pain medication can be provided even in remote areas with effective organization and empowerment of nurses, who were the most important determinants for the set up of this program. Education of family was also a key aspect. The authors believe that the experience gained in Sarawak may help other regions with low or middle resources in the set up of their PC program especially for their remote rural population.

Genetic differentiation in proboscis monkeys--A reanalysis.

PubMed

Nijman, Vincent

2016-01-01

Ogata and Seino [Zoo Biol, 2015, 34:76-79] sequenced the mitochondrial D-loop of five proboscis monkeys Nasalis larvatus from Yokahama Zoo, Japan, that were imported from Surabaya Zoo, Indonesia. They compared their sequences with those of 16 proboscis monkeys from Sabah, Malaysia, and on the basis of a haplotype network analysis of 256 base pairs concluded that the northern Malaysian and southern Indonesian populations of proboscis monkeys are genetically differentiated. I provide information on the origin of the Indonesian proboscis monkeys, showing that they were the first-generation offspring of wild-caught individuals from the Pulau Kaget Strict Nature Reserve in the province of South Kalimantan. Using a phylogenetic approach and adding additional sequences from Indonesia and Malaysia, I reanalyzed their data, and found no support for a north-south divide. Instead the resulting tree based on 433 base pairs sequences show two strongly supported clades, both containing individuals from Indonesia and Malaysia. Work on captive individuals, as reported by Ogata and Seino, can aid in developing appropriate markers and techniques, but to obtain a more complete understanding of the genetic diversity and differentiation of wild proboscis monkeys, more detailed geographic sampling from all over Borneo is needed. © 2015 Wiley Periodicals, Inc.

A large-scale forest fragmentation experiment: the Stability of Altered Forest Ecosystems Project

PubMed Central

Ewers, Robert M.; Didham, Raphael K.; Fahrig, Lenore; Ferraz, Gonçalo; Hector, Andy; Holt, Robert D.; Kapos, Valerie; Reynolds, Glen; Sinun, Waidi; Snaddon, Jake L.; Turner, Edgar C.

2011-01-01

Opportunities to conduct large-scale field experiments are rare, but provide a unique opportunity to reveal the complex processes that operate within natural ecosystems. Here, we review the design of existing, large-scale forest fragmentation experiments. Based on this review, we develop a design for the Stability of Altered Forest Ecosystems (SAFE) Project, a new forest fragmentation experiment to be located in the lowland tropical forests of Borneo (Sabah, Malaysia). The SAFE Project represents an advance on existing experiments in that it: (i) allows discrimination of the effects of landscape-level forest cover from patch-level processes; (ii) is designed to facilitate the unification of a wide range of data types on ecological patterns and processes that operate over a wide range of spatial scales; (iii) has greater replication than existing experiments; (iv) incorporates an experimental manipulation of riparian corridors; and (v) embeds the experimentally fragmented landscape within a wider gradient of land-use intensity than do existing projects. The SAFE Project represents an opportunity for ecologists across disciplines to participate in a large initiative designed to generate a broad understanding of the ecological impacts of tropical forest modification. PMID:22006969

Co-benefits of sustainable forest management in biodiversity conservation and carbon sequestration.

PubMed

Imai, Nobuo; Samejima, Hiromitsu; Langner, Andreas; Ong, Robert C; Kita, Satoshi; Titin, Jupiri; Chung, Arthur Y C; Lagan, Peter; Lee, Ying Fah; Kitayama, Kanehiro

2009-12-11

Sustainable forest management (SFM), which has been recently introduced to tropical natural production forests, is beneficial in maintaining timber resources, but information about the co-benefits for biodiversity conservation and carbon sequestration is currently lacking. We estimated the diversity of medium to large-bodied forest-dwelling vertebrates using a heat-sensor camera trapping system and the amount of above-ground, fine-roots, and soil organic carbon by a combination of ground surveys and aerial-imagery interpretations. This research was undertaken both in SFM applied as well as conventionally logged production forests in Sabah, Malaysian Borneo. Our carbon estimation revealed that the application of SFM resulted in a net gain of 54 Mg C ha(-1) on a landscape scale. Overall vertebrate diversity was greater in the SFM applied forest than in the conventionally logged forest. Specifically, several vertebrate species (6 out of recorded 36 species) showed higher frequency in the SFM applied forest than in the conventionally logged forest. The application of SFM to degraded natural production forests could result in greater diversity and abundance of vertebrate species as well as increasing carbon storage in the tropical rain forest ecosystems.

A checklist of land snails from the west coast islands of Sabah, Borneo (Mollusca, Gastropoda)

PubMed Central

Phung, Chee-Chean; Yu, Fred Tuh Yit; Liew, Thor-Seng

2017-01-01

Abstract Sabah, situated in one of the world’s biodiversity hotspots, has the largest number of islands in Malaysia with more than 500 of various sizes and degrees of isolation. However, information on the islands’ biodiversity is limited. This study provides an up-to-date checklist of land snail species found on 24 west coast islands in Sabah. A total of 67 species (nearly 20% of the total number of land snail species in the state) representing 37 genera and 19 families is enumerated based on systematic field surveys of 133 sampling plots, BORNEENSIS database records and species checklists published between 2000 and 2016. The number of species on the islands ranges from four to 29. Labuan Island has the highest number of species (29), followed by Tiga Island (25), Mantanani Besar Island (24) and Gaya Island (23). However, the populations of some land snail species may have declined as several previously recorded species on the islands were not found in a recent systematic field sampling. This checklist is provided as a baseline inventory for future island land snail studies and to better inform biodiversity conservation plans of marine parks and other islands on the Sabah west coast. PMID:28769672

Co-Benefits of Sustainable Forest Management in Biodiversity Conservation and Carbon Sequestration

PubMed Central

Imai, Nobuo; Samejima, Hiromitsu; Langner, Andreas; Ong, Robert C.; Kita, Satoshi; Titin, Jupiri; Chung, Arthur Y. C.; Lagan, Peter; Lee, Ying Fah; Kitayama, Kanehiro

2009-01-01

Background Sustainable forest management (SFM), which has been recently introduced to tropical natural production forests, is beneficial in maintaining timber resources, but information about the co-benefits for biodiversity conservation and carbon sequestration is currently lacking. Methodology/Principal Findings We estimated the diversity of medium to large-bodied forest-dwelling vertebrates using a heat-sensor camera trapping system and the amount of above-ground, fine-roots, and soil organic carbon by a combination of ground surveys and aerial-imagery interpretations. This research was undertaken both in SFM applied as well as conventionally logged production forests in Sabah, Malaysian Borneo. Our carbon estimation revealed that the application of SFM resulted in a net gain of 54 Mg C ha-1 on a landscape scale. Overall vertebrate diversity was greater in the SFM applied forest than in the conventionally logged forest. Specifically, several vertebrate species (6 out of recorded 36 species) showed higher frequency in the SFM applied forest than in the conventionally logged forest. Conclusions/Significance The application of SFM to degraded natural production forests could result in greater diversity and abundance of vertebrate species as well as increasing carbon storage in the tropical rain forest ecosystems. PMID:20011516

Plasmodium knowlesi transmission: integrating quantitative approaches from epidemiology and ecology to understand malaria as a zoonosis.

PubMed

Brock, P M; Fornace, K M; Parmiter, M; Cox, J; Drakeley, C J; Ferguson, H M; Kao, R R

2016-04-01

The public health threat posed by zoonotic Plasmodium knowlesi appears to be growing: it is increasingly reported across South East Asia, and is the leading cause of malaria in Malaysian Borneo. Plasmodium knowlesi threatens progress towards malaria elimination as aspects of its transmission, such as spillover from wildlife reservoirs and reliance on outdoor-biting vectors, may limit the effectiveness of conventional methods of malaria control. The development of new quantitative approaches that address the ecological complexity of P. knowlesi, particularly through a focus on its primary reservoir hosts, will be required to control it. Here, we review what is known about P. knowlesi transmission, identify key knowledge gaps in the context of current approaches to transmission modelling, and discuss the integration of these approaches with clinical parasitology and geostatistical analysis. We highlight the need to incorporate the influences of fine-scale spatial variation, rapid changes to the landscape, and reservoir population and transmission dynamics. The proposed integrated approach would address the unique challenges posed by malaria as a zoonosis, aid the identification of transmission hotspots, provide insight into the mechanistic links between incidence and land use change and support the design of appropriate interventions.

Rabies in the Dutch East Indies a century ago - a spatio-temporal case study in disease emergence.

PubMed

Ward, Michael P

2014-04-01

Rabies continues to spread through the Indonesian archipelago. During the past 20 years, several islands - including Flores, Ambon and Bali - that had historically been free of rabies have become infected. However, the Dutch East Indies (a Dutch colony that became modern Indonesia following World War II) had been infected since the 1880s. The spread of rabies is a lesson in the emergence of an infectious disease. Reports of human cases treated for rabies and livestock rabies cases from the 1880s to 1917 were compiled. The spatial and temporal distribution of these cases was analyzed using maps, spatial statistics and time-series techniques. The first confirmed case of rabies was reported in 1889 from the Batavia [Jakarta] district (although disease suspicion was reported as early as 1884). During the 1890s rabies was already commonly reported from Java and the east coast of Sumatra, and by the late 1890s, from Celebes [Sulawesi]. Between 1900 and 1916, cases were reported from other parts of Java, Sumatra and Sulawesi, and from Borneo, the Moluccas and other outlying islands. Between 1897 and 1916, a total of 8826 human cases treated for rabies were reported and between 1908 and 1917, 1033 livestock cases were reported. Most (97.5%) human cases treated were attributed to rabid dogs. Increasing numbers of reports were observed during the period. Between 1908 and 1916 the correlation between human and livestock case reports was 64.2%, and at the district level it was 75.9%. Moderate correlations (>40%) were found between human cases and livestock cases reported up to six months previously. Based on year of first report from each district, human cases were strongly clustered (Moran's autocorrelation 0.47, P=0.005). The most likely spatio-temporal cluster of reported cases of humans treated for rabies originated from the west coast of Sumatra between 1899 and 1905, and other clusters were identified in west Java (1898-1899), the district of Batavia and in east Java (1910-1911), Nusa Tengarra Barat (1912), Borneo (1914) and the east coast of Sumatra (1903-1906). Rabies was probably first introduced to the colonial capital of the Dutch Indies, Batavia [Jakarta] in the 1880s. It then spread rapidly throughout most of the archipelago during the next two to three decades because of the movement of dogs via the military forces, for trade and as pets, despite government regulations designed to control the epidemic. Such a history suggests that further emergence and reemergence of rabies in rabies-free islands will occur based on an island's location and position within the complex social, trade and transport network that represents the Indonesian archipelago. Targeted surveillance and enforcement of quarantine regulations remain critical, to prevent history repeating itself. Copyright © 2014 Elsevier B.V. All rights reserved.

Exotic plant species attack revegetation plants in post-coal mining areas

NASA Astrophysics Data System (ADS)

Yusuf, Muhammad; Arisoesilaningsih, Endang

2017-11-01

This study aimed to explore some invasive exotic plant species that have the potential to disrupt the growth of revegetation plants in post-coal mining areas. This research was conducted in a revegetation area of PT, Amanah Anugerah Adi Mulia (A3M) Kintap site, South Borneo. Direct observation was carried out on some revegetation areas by observing the growth of revegetation plants disturbed by exotic plant species and the spread of exotic plant species. Based on observation, several invasive exotic plant species were identified including Mikania cordata, Centrosema pubescence, Calopogonium mucunoides, Mimosa pudica, Ageratum conyzoides, and Chromolaena odorata. These five plant species grew wild in the revegetation area and showed ability to disrupt the growth of other plants. In some tree species, such as Acacia mangium, Paraserianthes falcataria, M. cordata could inhibit the growth and even kill the trees through covering the tree canopy. So, the trees could not receive optimum sun light for photosynthesis processes. M. cordata was also observed to have the most widespread distribution. Several exotic plant species such as C. mucunoides, M. pudica, and A. conyzoides were observed to have deep root systems compared with plant species used for revegetation. This growth characteristic allowed exotic plant species to win the competition for nutrient absorption with other plant species.

Analyzing structural variations along strike in a deep-water thrust belt

NASA Astrophysics Data System (ADS)

Totake, Yukitsugu; Butler, Robert W. H.; Bond, Clare E.; Aziz, Aznan

2018-03-01

We characterize a deep-water fold-thrust arrays imaged by a high-resolution 3D seismic dataset in the offshore NW Borneo, Malaysia, to understand the kinematics behind spatial arrangement of structural variations throughout the fold-thrust system. The seismic volume used covers two sub-parallel fold trains associated with a series of fore-thrusts and back-thrusts. We measured fault heave, shortening value, fold geometries (forelimb dip, interlimb angle and crest depth) along strike in individual fold trains. Heave plot on strike projection allows to identify individual thrust segments showing semi-elliptical to triangular to bimodal patterns, and linkages of these segments. The linkage sites are marked by local minima in cumulative heave. These local heave minima are compensated by additional structures, such as small imbricate thrusts and tight folds indicated by large forelimb dip and small interlimb angle. Complementary profiles of the shortening amount for the two fold trains result in smoother gradient of total shortening across the structures. We interpret this reflects kinematic interaction between two fold-thrust trains. This type of along-strike variation analysis provides comprehensive understanding of a fold-thrust system and may provide an interpretative strategy for inferring the presence of complex multiple faults in less well-imaged parts of seismic volumes.

Prediction analysis of effluent removal in a septic sludge treatment plant: a biomimetics engineering approach.

PubMed

Chun, Ting Sie; Malek, M A; Ismail, Amelia Ritahani

2014-09-20

Effluent discharge from septic tanks is affecting the environment in developing countries. The most challenging issue facing these countries is the cost of inadequate sanitation, which includes significant economic, social, and environmental burdens. Although most sanitation facilities are evaluated based on their immediate costs and benefits, their long-term performance should also be investigated. In this study, effluent quality-namely, the biological oxygen demand (BOD), chemical oxygen demand (COD), and total suspended solid (TSS)-was assessed using a biomimetics engineering approach. A novel immune network algorithm (INA) approach was applied to a septic sludge treatment plant (SSTP) for effluent-removal predictive modelling. The Matang SSTP in the city of Kuching, Sarawak, on the island of Borneo, was selected as a case study. Monthly effluent discharges from 2007 to 2011 were used for training, validating, and testing purposes using MATLAB 7.10. The results showed that the BOD effluent-discharge prediction was less than 50% of the specified standard after the 97(th) month of operation. The COD and TSS effluent removals were simulated at the 85(th) and the 121(st) months, respectively. The study proved that the proposed INA-based SSTP model could be used to achieve an effective SSTP assessment and management technique.

Changes in forest land use and management in Sabah, Malaysian Borneo, 1990–2010, with a focus on the Danum Valley region

PubMed Central

Reynolds, Glen; Payne, Junaidi; Sinun, Waidi; Mosigil, Gregory; Walsh, Rory P. D.

2011-01-01

In an earlier special issue of this journal, Marsh & Greer summarized forest land use in Sabah at that time and gave an introduction to the Danum Valley Conservation Area. Since that assessment, during the period 1990–2010, the forests of Sabah and particularly those of the ca 10 000 km2 concession managed on behalf of the State by Yayasan Sabah (the Sabah Foundation) have been subject to continual, industrial harvesting, including the premature re-logging of extensive tracts of previously only once-logged forest and large-scale conversion of natural forests to agricultural plantations. Over the same period, however, significant areas of previously unprotected pristine forest have been formally gazetted as conservation areas, while much of the forest to the north, the south and the east of the Danum Valley Conservation Area (the Ulu Segama and Malua Forest Reserves) has been given added protection and new forest restoration initiatives have been launched. This paper analyses these forest-management and land-use changes in Sabah during the period 1990–2010, with a focus on the Yayasan Sabah Forest Management Area. Important new conservation and forest restoration and rehabilitation initiatives within its borders are given particular emphasis. PMID:22006960

Climate extremes in Malaysia and the equatorial South China Sea

NASA Astrophysics Data System (ADS)

Salahuddin, Ahmed; Curtis, Scott

2011-08-01

The southern extent of the South China Sea (SCS) is an important natural resource epicenter for Malaysia which experiences climate extremes. This paper documents the variability of extremes in the equatorial SCS through selected ground-based observations of precipitation in Malaysia and ship-based observations of wind data in the Maritime Continent region, to elucidate the interrelationship between precipitation variability over Malaysia and wind variability over the ocean. The data have been carefully inspected and analyzed, and related to the real-time multivariate Madden-Julian Oscillation (MJO) time series. The analysis suggests that the northeast or boreal winter monsoon dominates extreme rainfall in eastern Malaysian cities. Further, the west coast of Peninsular Malaysia and Borneo Malaysia are affected by the MJO differently than the east coast of Peninsular Malaysia. From the wind analysis we found that average zonal wind is westerly from May to September and easterly from November to April. When the active (convective) phase of the MJO is centered over the Maritime Continent, the strong westerly wind bursts are more frequent in the South China Sea. While more investigation is needed, these results suggest that the status of the Madden-Julian Oscillation can be used to help forecast climate extremes in areas of Malaysia.

Trap geometry in three giant montane pitcher plant species from Borneo is a function of tree shrew body size.

PubMed

Chin, Lijin; Moran, Jonathan A; Clarke, Charles

2010-04-01

*Three Bornean pitcher plant species, Nepenthes lowii, N. rajah and N. macrophylla, produce modified pitchers that 'capture' tree shrew faeces for nutritional benefit. Tree shrews (Tupaia montana) feed on exudates produced by glands on the inner surfaces of the pitcher lids and defecate into the pitchers. *Here, we tested the hypothesis that pitcher geometry in these species is related to tree shrew body size by comparing the pitcher characteristics with those of five other 'typical' (arthropod-trapping) Nepenthes species. *We found that only pitchers with large orifices and lids that are concave, elongated and oriented approximately at right angles to the orifice capture faeces. The distance from the tree shrews' food source (that is, the lid nectar glands) to the front of the pitcher orifice precisely matches the head plus body length of T. montana in the faeces-trapping species, and is a function of orifice size and the angle of lid reflexion. *Substantial changes to nutrient acquisition strategies in carnivorous plants may occur through simple modifications to trap geometry. This extraordinary plant-animal interaction adds to a growing body of evidence that Nepenthes represents a candidate model for adaptive radiation with regard to nitrogen sequestration strategies.

Fecal Nutrients Suggest Diets of Higher Fiber Levels in Free-Ranging than in Captive Proboscis Monkeys (Nasalis larvatus)

PubMed Central

Matsuda, Ikki; Bernard, Henry; Tuuga, Augustine; Nathan, Sen K. S. S.; Sha, John C. M.; Osman, Ismon; Sipangkui, Rosa; Seino, Satoru; Asano, Sanae; Wong, Anna; Kreuzer, Michael; Ramirez Saldivar, Diana A.; Clauss, Marcus

2018-01-01

Understanding the natural diet of species may provide useful information that can contribute to successful captive maintenance. A common problem experienced with captive foregut-fermenting primate (colobine) diets is that they are deficient in fiber and therefore highly digestible. This may contribute to gastrointestinal disorders often observed in zoos. An approach to obtain information relevant for the improvement of diets is to compare the nutrient composition of feces from free-ranging and captive individuals. In theory, fecal material can be considered a proxy for diet intake integrated over a certain period of time. We collected fecal samples from eight free-ranging proboscis monkey (Nasalis larvatus, a highly endangered colobine species) groups from a secondary forest along the Kinabatangan River and four from a mixed mangrove-riverine forest along the Garama River, Sabah, Borneo, Malaysia. We also collected fecal samples from 12 individual captive adult/sub-adult proboscis monkeys from three different zoos. We confirmed that feces from free-ranging monkeys contained more fiber and less metabolic fecal nitrogen than those from captive specimens, indicating a less digestible diet in the wild. Modifying the diets of captive colobines to include more fiber, comparable to those of free-ranging ones, may contribute to their health and survival. PMID:29404345

The adaptive nature of culture. A cross-cultural analysis of the returns of local environmental knowledge in three indigenous societies.

PubMed

Reyes-García, Victoria; Guèze, Maximilien; Díaz-Reviriego, Isabel; Duda, Romain; Fernández-Llamazares, Álvaro; Gallois, Sandrine; Napitupulu, Lucentezza; Orta-Martínez, Martí; Pyhälä, Aili

2016-12-01

Researchers have argued that the behavioral adaptations that explain the success of our species are partially cultural, i.e., cumulative and socially transmitted. Thus, understanding the adaptive nature of culture is crucial to understand human evolution. We use a cross-cultural framework and empirical data purposely collected to test whether culturally transmitted and individually appropriated knowledge provides individual returns in terms of hunting yields and health and, by extension, to nutritional status, a proxy for individual adaptive success. Data were collected in three subsistence-oriented societies: the Tsimane' (Amazon), the Baka (Congo Basin), and the Punan (Borneo). Results suggest that variations in individual levels of local environmental knowledge relate to individual hunting returns and to self-reported health, but not to nutritional status. We argue that this paradox can be explained through the prevalence of sharing: individuals achieving higher returns to their knowledge transfer them to the rest of the population, which explains the lack of association between knowledge and nutritional status. The finding is in consonance with previous research highlighting the importance of cultural traits favoring group success, but pushes it forward by elucidating the mechanisms through which individual and group level adaptive forces interact.

Continental Shelf Sediments of Sarawak, Malaysian Borneo.

PubMed

Morni, Wan Zabidii Wan; Ab Rahim, Siti Akmar Khadijah; Masron, Tarmiji; Rumpet, Richard; Musel, Jamil; Hassan, Ruhana

2017-01-01

Sediment distributions in deep sea influence the benthic community structure and thus play an important role in shaping the marine ecosystem. Several studies on sediment characteristics had been conducted in South China Sea (SCS), but only limited to coastal areas of regions within SCS territories. Therefore, this study was carried out to analyze the benthic sediment profile in an area beyond 12 nautical miles off the coast of Sarawak, southern SCS. Sediment samples were collected from 31 stations, comprising three depth ranges: (I) 20-50 m, (II) 50-100 m, and (III) 100-200 m. The total organic matter (TOM) contents were determined and subjected to dry and wet sieving methods for particle size analysis. TOM contents in the deep area (>50 m) were significantly higher ( p = 0.05) and positively correlated ( r = 0.73) with silt-clay fraction. About 55% and 82% of stations in strata II and III, respectively, were dominated by silt-clay fractions (<63  μ m mean diameter), coherent with TOM data. In addition, sediments in the deep area (>50 m) tend to be poorly sorted, very fine skewed, and platykurtic. Unlike data obtained 20 years ago which reported high content of silt-clay (58%), this study recorded a lower content (35%); therefore, changes in sediment load had been observed in southern SCS.

Plasmodium knowlesi from archival blood films: Further evidence that human infections are widely distributed and not newly emergent in Malaysian Borneo

PubMed Central

Lee, Kim-Sung; Cox-Singh, Janet; Brooke, George; Matusop, Asmad; Singh, Balbir

2009-01-01

Human infections with Plasmodium knowlesi have been misdiagnosed by microscopy as Plasmodium malariae due to their morphological similarities. Although microscopy-identified P. malariae cases have been reported in the state of Sarawak (Malaysian Borno) as early as 1952, recent epidemiological studies suggest the absence of indigenous P. malariae infections. The present study aimed to determine the past incidence and distribution of P. knowlesi infections in the state of Sarawak based on archival blood films from patients diagnosed by microscopy as having P. malariae infections. Nested PCR assays were used to identify Plasmodium species in DNA extracted from 47 thick blood films collected in 1996 from patients in seven different divisions throughout the state of Sarawak. Plasmodium knowlesi DNA was detected in 35 (97.2%) of 36 blood films that were positive for Plasmodium DNA, with patients originating from all seven divisions. Only one sample was positive for P. malariae DNA. This study provides further evidence of the widespread distribution of human infections with P. knowlesi in Sarawak and its past occurrence. Taken together with data from previous studies, our findings suggest that P. knowlesi malaria is not a newly emergent disease in humans. PMID:19358848

Oxidation of a new Biogenic VOC: Chamber Studies of the Atmospheric Chemistry of Methyl Chavicol

NASA Astrophysics Data System (ADS)

Bloss, William; Alam, Mohammed; Adbul Raheem, Modinah; Rickard, Andrew; Hamilton, Jacqui; Pereira, Kelly; Camredon, Marie; Munoz, Amalia; Vazquez, Monica; Vera, Teresa; Rodenas, Mila

2013-04-01

The oxidation of volatile organic compounds (VOCs) leads to formation of ozone and SOA, with consequences for air quality, health, crop yields, atmospheric chemistry and radiative transfer. Recent observations have identified Methyl Chavicol ("MC": Estragole; 1-allyl-4-methoxybenzene, C10H12O) as a major BVOC above pine forests in the USA, and oil palm plantations in Malaysian Borneo. Palm oil cultivation, and hence MC emissions, may be expected to increase with societal food and bio fuel demand. We present the results of a series of simulation chamber experiments to assess the atmospheric fate of MC. Experiments were performed in the EUPHORE facility, monitoring stable product species, radical intermediates, and aerosol production and composition. We determine rate constants for reaction of MC with OH and O3, and ozonolysis radical yields. Stable product measurements (FTIR, PTRMS, GC-SPME) are used to determine the yields of stable products formed from OH- and O3- initiated oxidation, and to develop an understanding of the initial stages of the MC degradation chemistry. A surrogate mechanism approach is used to simulate MC degradation within the MCM, evaluated in terms of ozone production measured in the chamber experiments, and applied to quantify the role of MC in the real atmosphere.

Total flavonoid content and antioxidant activity in leaves and stems extract of cultivated and wild tabat barito (Ficus deltoidea Jack)

NASA Astrophysics Data System (ADS)

Manurung, Hetty; Kustiawan, Wawan; Kusuma, Irawan W.; Marjenah

2017-02-01

Tabat barito (Ficus deltoidea Jack) is a name given by Dayak Tribe who lived in Borneo-Kalimantan and it is belongs to the moraceae. Almost all of the parts of F. deltoidea plant is widely used as a medicinal property. The total flavonoid content (TFC) and antioxidant activity from cultivated and wild F. deltoidea leaves and stems extract were assessed. Total flavonoid content was estimated by using Aluminium chloride colorimetric method and expressed as catechin equivalents (mg CE g-1 extract) and the antioxidant activity by the DPPH (2,2-diphenyl-1-picryl hydrazyl) method. The content of total flavonoid of leaves and stems (430.77 and 371.80 µg CE mg-1 extract) of cultivated F. deltoidea were higher than in the wild leaves and stems (114.82 and 66.67 µg CE mg-1 extract). The IC50 of leaves extract of cultivated and wild F. deltoidea, based on the DPPH assay, has a strong antioxidant activity (34.19 and 39.31 µg mL-1 extract) as compared to stems extract. These results showed that the cultivated F. deltoidea are suitable source for medicinal properties and the leaves could be exploited as source of natural antioxidants.

Trophic flexibility and the persistence of understory birds in intensively logged rainforest.

PubMed

Edwards, David P; Woodcock, Paul; Newton, Rob J; Edwards, Felicity A; Andrews, David J R; Docherty, Teegan D S; Mitchell, Simon L; Ota, Takahiro; Benedick, Suzan; Bottrell, Simon H; Hamer, Keith C

2013-10-01

Effects of logging on species composition in tropical rainforests are well known but may fail to reveal key changes in species interactions. We used nitrogen stable-isotope analysis of 73 species of understory birds to quantify trophic responses to repeated intensive logging of rainforest in northern Borneo and to test 4 hypotheses: logging has significant effects on trophic positions and trophic-niche widths of species, and the persistence of species in degraded forest is related to their trophic positions and trophic-niche widths in primary forest. Species fed from higher up the food chain and had narrower trophic-niche widths in degraded forest. Species with narrow trophic-niche widths in primary forest were less likely to persist after logging, a result that indicates a higher vulnerability of dietary specialists to local extinction following habitat disturbance. Persistence of species in degraded forest was not related to a species' trophic position. These results indicate changes in trophic organization that were not apparent from changes in species composition and highlight the importance of focusing on trophic flexibility over the prevailing emphasis on membership of static feeding guilds. Our results thus support the notion that alterations to trophic organization and interactions within tropical forests may be a pervasive and functionally important hidden effect of forest degradation. © 2013 Society for Conservation Biology.

Potential natural sensitizers extracted from the skin of Canarium odontophyllum fruits for dye-sensitized solar cells

NASA Astrophysics Data System (ADS)

Lim, Andery; Kumara, N. T. R. N.; Tan, Ai Ling; Mirza, Aminul Huq; Chandrakanthi, R. L. N.; Petra, Mohammad Iskandar; Ming, Lim Chee; Senadeera, G. K. R.; Ekanayake, Piyasiri

2015-03-01

Possibility of use of dye extract from skin samples of a seasonal, indigenous fruit from Borneo, namely Canarium odontophyllum, in dye sensitized solar cells (DSSCs) are explored. Three main groups of flavonoid pigments are detected and these pigments exhibit different UV-vis absorption properties, and hence showing different light harvesting capabilities. When applied in DSSCs. The detected pigment constituents of the extract consist of aurone (maritimein), anthocyanidin (pelargonidin) and anthocyanidin (cyanidin derivatives). When tested in DSSC, the highest conversion efficiency of 1.43% is exhibited by cyanidin derivatives, and this is followed by conversion efficiencies of 0.51% and 0.79% for aurone and pelargonidin, respectively. It is shown that individual pigments, like cyanidin derivatives and pelargonidin, exhibit higher power conversion efficiency when compared to that of C.odontophyllum skin pigment mixture (with a conversion efficiency of only 0.68%). The results indicate a possibility of masking effects of the pigments when used as a mixture. The acidification of C.odontophyllum skin pigments with concentrated hydrochloric acid improves the conversion efficiency of the mixture from 0.68% to 0.99%. The discussion in this paper will draw data and observations from the variation in absorption and adsorption properties, the HOMO-LUMO levels, the energy band gaps and the functional group compositions of the detected flavonoids.

Population exposure to hazardous air quality due to the 2015 fires in Equatorial Asia.

PubMed

Crippa, P; Castruccio, S; Archer-Nicholls, S; Lebron, G B; Kuwata, M; Thota, A; Sumin, S; Butt, E; Wiedinmyer, C; Spracklen, D V

2016-11-16

Vegetation and peatland fires cause poor air quality and thousands of premature deaths across densely populated regions in Equatorial Asia. Strong El-Niño and positive Indian Ocean Dipole conditions are associated with an increase in the frequency and intensity of wildfires in Indonesia and Borneo, enhancing population exposure to hazardous concentrations of smoke and air pollutants. Here we investigate the impact on air quality and population exposure of wildfires in Equatorial Asia during Fall 2015, which were the largest over the past two decades. We performed high-resolution simulations using the Weather Research and Forecasting model with Chemistry based on a new fire emission product. The model captures the spatio-temporal variability of extreme pollution episodes relative to space- and ground-based observations and allows for identification of pollution sources and transport over Equatorial Asia. We calculate that high particulate matter concentrations from fires during Fall 2015 were responsible for persistent exposure of 69 million people to unhealthy air quality conditions. Short-term exposure to this pollution may have caused 11,880 (6,153-17,270) excess mortalities. Results from this research provide decision-relevant information to policy makers regarding the impact of land use changes and human driven deforestation on fire frequency and population exposure to degraded air quality.

Population exposure to hazardous air quality due to the 2015 fires in Equatorial Asia

PubMed Central

Crippa, P.; Castruccio, S.; Archer-Nicholls, S.; Lebron, G. B.; Kuwata, M.; Thota, A.; Sumin, S.; Butt, E.; Wiedinmyer, C.; Spracklen, D. V.

2016-01-01

Vegetation and peatland fires cause poor air quality and thousands of premature deaths across densely populated regions in Equatorial Asia. Strong El-Niño and positive Indian Ocean Dipole conditions are associated with an increase in the frequency and intensity of wildfires in Indonesia and Borneo, enhancing population exposure to hazardous concentrations of smoke and air pollutants. Here we investigate the impact on air quality and population exposure of wildfires in Equatorial Asia during Fall 2015, which were the largest over the past two decades. We performed high-resolution simulations using the Weather Research and Forecasting model with Chemistry based on a new fire emission product. The model captures the spatio-temporal variability of extreme pollution episodes relative to space- and ground-based observations and allows for identification of pollution sources and transport over Equatorial Asia. We calculate that high particulate matter concentrations from fires during Fall 2015 were responsible for persistent exposure of 69 million people to unhealthy air quality conditions. Short-term exposure to this pollution may have caused 11,880 (6,153–17,270) excess mortalities. Results from this research provide decision-relevant information to policy makers regarding the impact of land use changes and human driven deforestation on fire frequency and population exposure to degraded air quality. PMID:27848989

Reproductive resource partitioning in two sympatric Goniothalamus species (Annonaceae) from Borneo: floral biology, pollinator trapping and plant breeding system

PubMed Central

Lau, Jenny Y. Y.; Pang, Chun-Chiu; Ramsden, Lawrence; Saunders, Richard M. K.

2016-01-01

The floral phenology, pollination ecology and breeding systems of two sympatric early-divergent angiosperms, Goniothalamus tapisoides and G. suaveolens (Annonaceae) are compared. The flowers are protogynous and morphologically similar, with anthesis over 23–25 h. Both species are predominantly xenogamous and pollinated by small beetles: G. tapisoides mainly by Curculionidae and G. suaveolens mainly by Nitidulidae. Coevolution and reproductive resource partitioning, reducing interspecific pollen transfer, is achieved by temporal isolation, due to contrasting floral phenologies; and ethological isolation, due to contrasting floral scents that contain attractants specific to the two beetle families. Analysis of floral scents revealed three volatiles (3-methylbutyl acetate, ethyl hexanoate and 2-phenylethanol) that are known to be nitidulid attractants in the floral scent of G. suaveolens, but absent from that of G. tapisoides. An effective pollinator trapping mechanism is demonstrated for both species, representing the first such report for the family. Trapping is achieved by the compression of the outer petals against the apertures between the inner petals. This trapping mechanism is likely to be a key evolutionary innovation for Goniothalamus, increasing pollination efficiency by increasing pollen loading on beetles during the staminate phase, promoting effective interfloral pollinator movements, and increasing seed-set by enabling rapid turn-over of flowers. PMID:27767040

Reproductive resource partitioning in two sympatric Goniothalamus species (Annonaceae) from Borneo: floral biology, pollinator trapping and plant breeding system.

PubMed

Lau, Jenny Y Y; Pang, Chun-Chiu; Ramsden, Lawrence; Saunders, Richard M K

2016-10-21

The floral phenology, pollination ecology and breeding systems of two sympatric early-divergent angiosperms, Goniothalamus tapisoides and G. suaveolens (Annonaceae) are compared. The flowers are protogynous and morphologically similar, with anthesis over 23-25 h. Both species are predominantly xenogamous and pollinated by small beetles: G. tapisoides mainly by Curculionidae and G. suaveolens mainly by Nitidulidae. Coevolution and reproductive resource partitioning, reducing interspecific pollen transfer, is achieved by temporal isolation, due to contrasting floral phenologies; and ethological isolation, due to contrasting floral scents that contain attractants specific to the two beetle families. Analysis of floral scents revealed three volatiles (3-methylbutyl acetate, ethyl hexanoate and 2-phenylethanol) that are known to be nitidulid attractants in the floral scent of G. suaveolens, but absent from that of G. tapisoides. An effective pollinator trapping mechanism is demonstrated for both species, representing the first such report for the family. Trapping is achieved by the compression of the outer petals against the apertures between the inner petals. This trapping mechanism is likely to be a key evolutionary innovation for Goniothalamus, increasing pollination efficiency by increasing pollen loading on beetles during the staminate phase, promoting effective interfloral pollinator movements, and increasing seed-set by enabling rapid turn-over of flowers.

Strategic Planning of small and medium industries. Case study: Hulu Sungai Selatan Regency, South Borneo Province

NASA Astrophysics Data System (ADS)

Elya, N.; Shoimah, F.; Kartika, A. P.; Sukanto, A. B.

2017-06-01

Hulu Sungai Selatan Regency has a potential of SMI (Small and Medium Industries) sectors can be developed as economic development. Based on RTRW of Hulu Sungai Selatan Regency, the region has 14 SMI are a propeller, pottery, blacksmith, dried fish, purun webbing, pastries, dodol, crackers, imitation jewelry, woven water hyacinth, bamboo, syrup, brown sugar, and saber. There are several issues related to SMI development such as low quality and quantity of human resources, local raw material, limited capital, low competitiveness, conventional production equipment, and lack of media for marketing the product. The purpose of this study is to develop the leading sectors of SMI and improve the economy and quality of the resident. The research method is descriptive qualitative, leading sectors analysis and force field analysis. Data were obtained from primary and secondary survey of relevant institutions and interview to the community. Based on leading sectors analysis, there is six leading sector is a propeller, blacksmith, dodol, dried fish, pottery, and crackers. Based on force field analysis, determined the strategy for using operational excellence’s concept, so that we can develop the industrial sector by minimizing productions cost so SMI’s product can compete by the price and efficient production process.

The conservation value of South East Asia's highly degraded forests: evidence from leaf-litter ants

PubMed Central

Woodcock, Paul; Edwards, David P.; Fayle, Tom M.; Newton, Rob J.; Khen, Chey Vun; Bottrell, Simon H.; Hamer, Keith C.

2011-01-01

South East Asia is widely regarded as a centre of threatened biodiversity owing to extensive logging and forest conversion to agriculture. In particular, forests degraded by repeated rounds of intensive logging are viewed as having little conservation value and are afforded meagre protection from conversion to oil palm. Here, we determine the biological value of such heavily degraded forests by comparing leaf-litter ant communities in unlogged (natural) and twice-logged forests in Sabah, Borneo. We accounted for impacts of logging on habitat heterogeneity by comparing species richness and composition at four nested spatial scales, and examining how species richness was partitioned across the landscape in each habitat. We found that twice-logged forest had fewer species occurrences, lower species richness at small spatial scales and altered species composition compared with natural forests. However, over 80 per cent of species found in unlogged forest were detected within twice-logged forest. Moreover, greater species turnover among sites in twice-logged forest resulted in identical species richness between habitats at the largest spatial scale. While two intensive logging cycles have negative impacts on ant communities, these degraded forests clearly provide important habitat for numerous species and preventing their conversion to oil palm and other crops should be a conservation priority. PMID:22006966

Geologic and geomorphic controls of coal development in some Tertiary Rocky Mountain basins, USA

USGS Publications Warehouse

Flores, R.M.

1993-01-01

Previous investigations have not well defined the controls on the development of minable coals in fluvial environments. This study was undertaken to provide a clearer understanding of these controls, particularly in of the lower Tertiary coal-bearing deposits of the Raton and Powder River basins in the Rocky Mountain region of the United States. In this region, large amounts of coals accumulated in swamps formed in the flow-through fluvial systems that infilled these intermontane basins. Extrabasinal and intrabasinal tectonism partly controlled the stratigraphic and facies distributions of minable coal deposits. The regional accumulation of coals was favored by the rapid basin subsidence coupled with minimal uplift of the source area. During these events, coals developed in swamps associated with anastomosed and meandering fluvial systems and alluvial fans. The extensive and high rate of sediment input from these fluvial systems promoted the formation of ombrotrophic, raised swamps, which produced low ash and anomalously thick coals. The petrology and palynology of these coals, and the paleobotany of the associated sediments, suggest that ombrotrophic, raised swamps were common in the Powder River Basin, where the climate during the early Tertiary was paratropical. The paleoecology of these swamps is identical to that of the modern ombrotrophic, raised swamps of the Baram and Mahakam Rivers of Borneo. ?? 1993.

Scent marking in Sunda clouded leopards (Neofelis diardi): novel observations close a key gap in understanding felid communication behaviours.

PubMed

Allen, Maximilian L; Wittmer, Heiko U; Setiawan, Endro; Jaffe, Sarah; Marshall, Andrew J

2016-10-14

Intraspecific communication is integral to the behavioural ecology of solitary carnivores, but observing and quantifying their communication behaviours in natural environments is difficult. Our systematic literature review found that basic information on scent marking is completely lacking for 23% of all felid species, and information on 21% of other felid species comes solely from one study of captive animals. Here we present results of the first systematic investigation of the scent marking behaviours of Sunda clouded leopards in the wild. Our observations using motion-triggered video cameras in Indonesian Borneo are novel for clouded leopards, and contrary to previous descriptions of their behaviour. We found that clouded leopards displayed 10 distinct communication behaviours, with olfaction, scraping, and cheek rubbing the most frequently recorded. We also showed that males make repeated visits to areas they previously used for marking and that multiple males advertise and receive information at the same sites, potentially enhancing our ability to document and monitor clouded leopard populations. The behaviours we recorded are remarkably similar to those described in other solitary felids, despite tremendous variation in the environments they inhabit, and close a key gap in understanding and interpreting communication behaviours of clouded leopards and other solitary felids.

Intestinal parasites of endangered orangutans (Pongo pygmaeus) in Central and East Kalimantan, Borneo, Indonesia.

PubMed

Labes, E M; Hegglin, D; Grimm, F; Nurcahyo, W; Harrison, M E; Bastian, M L; Deplazes, P

2010-01-01

Faecal samples from 163 captive and semi-captive individuals, 61 samples from wild individuals and 38 samples from captive groups of Bornean orangutans (Pongo pygmaeus) in Kalimantan, Indonesia, were collected during one rainy season (November 2005-May 2006) and screened for intestinal parasites using sodium acetate-acetic acid-formalin-concentration (SAFC), sedimentation, flotation, McMaster- and Baermann techniques. We aimed to identify factors influencing infection risk for specific intestinal parasites in wild orangutans and individuals living in captivity. Various genera of Protozoa (including Entamoeba, Endolimax, Iodamoeba, Balantidium, Giardia and Blastocystis), nematodes (such as Strongyloides, Trichuris, Ascaris, Enterobius, Trichostrongylus and hookworms) and one trematode (a dicrocoeliid) were identified. For the first time, the cestode Hymenolepis was detected in orangutans. Highest prevalences were found for Strongyloides (individuals 37%; groups 58%), hookworms (41%; 58%), Balantidium (40%; 61%), Entamoeba coli (29%; 53%) and a trichostrongylid (13%; 32%). In re-introduction centres, infants were at higher risk of infection with Strongyloides than adults. Infection risk for hookworms was significantly higher in wild males compared with females. In groups, the centres themselves had a significant influence on the infection risk for Balantidium. Ranging patterns of wild orangutans, overcrowding in captivity and a shift of age composition in favour of immatures seemed to be the most likely factors leading to these results.

Acoustic Characteristics of Long Calls Produced by Male Orang-Utans (Pongo pygmaeus wurmbii): Advertising Individual Identity, Context, and Travel Direction.

PubMed

Askew, James A; Morrogh-Bernard, Helen C

2016-01-01

Acoustic characteristics and context of the long-distance call of male orang-utans (Pongo pygmaeus wurmbii) were examined in a population of orang-utans from Central Kalimantan, Borneo. Male orang-utans produced long calls under different circumstances, including calls made spontaneously, in response to conspecifics, when accompanied by a snag crash and when travelling with a female. It was shown by acoustic analyses that there was individual discrimination between the male's calls, discrimination between the calls made under different contexts, and between calls from one individual from different years, which coincided with a change in his dominance status. We also confirm that flanged male orang-utans advertise their intended travel route, by long calling in the direction of their travel. If other orang-utans (males and females) within ear shot of the caller can identify the caller from their long call, and even obtain information about the context and status of the individual, they can then therefore choose whether to approach or avoid them. Thus, males seem to be using their long call to announce their presence, allowing them to orient themselves spatially to other orang-utans, and, potentially, to co-ordinate a network of loose associations between both males and females in the area. © 2016 S. Karger AG, Basel.

Androgens and innate immunity in rehabilitated semi-captive orangutans (Pongo pygmaeus morio) from Malaysian Borneo.

PubMed

Prall, Sean P; Ambu, Laurentius; Nathan, Senthilvel; Alsisto, Sylvia; Ramirez, Diana; Muehlenbein, Michael P

2015-06-01

Despite the implications for the development of life-history traits, endocrine-immune trade-offs in apes are not well studied. This is due, in part, to difficulty in sampling wild primates, and lack of methods available for immune measures using samples collected noninvasively. Evidence for androgen-mediated immune trade-offs in orangutans is virtually absent, and very little is known regarding their pattern of adrenal development and production of adrenal androgens. To remedy both of these deficiencies, sera were collected from orangutans (Pongo pygmaeus morio) (N = 38) at the Sepilok Orangutan Rehabilitation Centre, Sabah, Malaysia, during routine health screenings. Testosterone, dehydroepiandrosterone (DHEA), and dehydroepiandrosterone-sulfate (DHEA-S) were assayed, along with two measures of functional innate immunity. DHEA-S concentrations, but not DHEA, increased with age in this sample of 1-18 year old animals. DHEA concentrations were higher in animals with higher levels of serum bacteria killing ability, while DHEA-S and testosterone concentrations were higher in animals with reduced complement protein activity. Patterns of DHEA-S concentration in this sample are consistent with patterns of adrenarche observed in other apes. Results from this study suggest that in addition to testosterone, DHEA and DHEA-S may have potent effects on immunological activity in this species. © 2015 Wiley Periodicals, Inc.

Poverty and corruption compromise tropical forest reserves.

PubMed

Wright, S Joseph; Sanchez-Azofeifa, G Arturo; Portillo-Quintero, Carlos; Davies, Diane

2007-07-01

We used the global fire detection record provided by the satellite-based Moderate Resolution Imaging Spectroradiometer (MODIS) to determine the number of fires detected inside 823 tropical and subtropical moist forest reserves and for contiguous buffer areas 5, 10, and 15 km wide. The ratio of fire detection densities (detections per square kilometer) inside reserves to their contiguous buffer areas provided an index of reserve effectiveness. Fire detection density was significantly lower inside reserves than in paired, contiguous buffer areas but varied by five orders of magnitude among reserves. The buffer: reserve detection ratio varied by up to four orders of magnitude among reserves within a single country, and median values varied by three orders of magnitude among countries. Reserves tended to be least effective at reducing fire frequency in many poorer countries and in countries beset by corruption. Countries with the most successful reserves include Costa Rica, Jamaica, Malaysia, and Taiwan and the Indonesian island of Java. Countries with the most problematic reserves include Cambodia, Guatemala, Paraguay, and Sierra Leone and the Indonesian portion of Borneo. We provide fire detection density for 3964 tropical and subtropical reserves and their buffer areas in the hope that these data will expedite further analyses that might lead to improved management of tropical reserves.

Evaluating land use and aboveground biomass dynamics in an oil palm-dominated landscape in Borneo using optical remote sensing

NASA Astrophysics Data System (ADS)

Singh, Minerva; Malhi, Yadvinder; Bhagwat, Shonil

2014-01-01

The focus of this study is to assess the efficacy of using optical remote sensing (RS) in evaluating disparities in forest composition and aboveground biomass (AGB). The research was carried out in the East Sabah region, Malaysia, which constitutes a disturbance gradient ranging from pristine old growth forests to forests that have experienced varying levels of disturbances. Additionally, a significant proportion of the area consists of oil palm plantations. In accordance with local laws, riparian forest (RF) zones have been retained within oil palm plantations and other forest types. The RS imagery was used to assess forest stand structure and AGB. Band reflectance, vegetation indicators, and gray-level co-occurrence matrix (GLCM) consistency features were used as predictor variables in regression analysis. Results indicate that the spectral variables were limited in their effectiveness in differentiating between forest types and in calculating biomass. However, GLCM based variables illustrated strong correlations with the forest stand structures as well as with the biomass of the various forest types in the study area. The present study provides new insights into the efficacy of texture examination methods in differentiating between various land-use types (including small, isolated forest zones such as RFs) as well as their AGB stocks.

Changes in forest land use and management in Sabah, Malaysian Borneo, 1990-2010, with a focus on the Danum Valley region.

PubMed

Reynolds, Glen; Payne, Junaidi; Sinun, Waidi; Mosigil, Gregory; Walsh, Rory P D

2011-11-27

In an earlier special issue of this journal, Marsh & Greer summarized forest land use in Sabah at that time and gave an introduction to the Danum Valley Conservation Area. Since that assessment, during the period 1990-2010, the forests of Sabah and particularly those of the ca 10 000 km(2) concession managed on behalf of the State by Yayasan Sabah (the Sabah Foundation) have been subject to continual, industrial harvesting, including the premature re-logging of extensive tracts of previously only once-logged forest and large-scale conversion of natural forests to agricultural plantations. Over the same period, however, significant areas of previously unprotected pristine forest have been formally gazetted as conservation areas, while much of the forest to the north, the south and the east of the Danum Valley Conservation Area (the Ulu Segama and Malua Forest Reserves) has been given added protection and new forest restoration initiatives have been launched. This paper analyses these forest-management and land-use changes in Sabah during the period 1990-2010, with a focus on the Yayasan Sabah Forest Management Area. Important new conservation and forest restoration and rehabilitation initiatives within its borders are given particular emphasis.

Phylogeography of the smooth-coated otter (Lutrogale perspicillata): distinct evolutionary lineages and hybridization with the Asian small-clawed otter (Aonyx cinereus).

PubMed

Moretti, Beatrice; Al-Sheikhly, Omar F; Guerrini, Monica; Theng, Meryl; Gupta, Brij K; Haba, Mukhtar K; Khan, Waseem A; Khan, Aleem A; Barbanera, Filippo

2017-01-27

We investigated the phylogeography of the smooth-coated otter (Lutrogale perspicillata) to determine its spatial genetic structure for aiding an adaptive conservation management of the species. Fifty-eight modern and 11 archival (dated 1882-1970) otters sampled from Iraq to Malaysian Borneo were genotyped (mtDNA Cytochrome-b, 10 microsatellite DNA loci). Moreover, 16 Aonyx cinereus (Asian small-clawed otter) and seven Lutra lutra (Eurasian otter) were sequenced to increase information available for phylogenetic reconstructions. As reported in previous studies, we found that L. perspicillata, A. cinereus and A. capensis (African clawless otter) grouped in a clade sister to the genus Lutra, with L. perspicillata and A. cinereus being reciprocally monophyletic. Within L. perspicillata, we uncovered three Evolutionarily Significant Units and proved that L. p. maxwelli is not only endemic to Iraq but also the most recent subspecies. We suggest a revision of the distribution range limits of easternmost L. perspicillata subspecies. We show that smooth-coated otters in Singapore are L. perspicillata x A. cinereus hybrids with A. cinereus mtDNA, the first reported case of hybridization in the wild among otters. This result also provides evidence supporting the inclusion of L. perspicillata and A. cinereus in the genus Amblonyx, thus avoiding the paraphyly of the genus Aonyx.

The adaptive nature of culture. A cross-cultural analysis of the returns of local environmental knowledge in three indigenous societies

PubMed Central

Reyes-García, Victoria; Guèze, Maximilien; Díaz-Reviriego, Isabel; Duda, Romain; Fernández-Llamazares, Álvaro; Gallois, Sandrine; Napitupulu, Lucentezza; Orta-Martínez, Martí; Pyhälä, Aili

2016-01-01

Researchers have argued that the behavioral adaptations that explain the success of our species are partially cultural, i.e., cumulative and socially transmitted. Thus, understanding the adaptive nature of culture is crucial to understand human evolution. We use a cross-cultural framework and empirical data purposely collected to test whether culturally transmitted and individually appropriated knowledge provides individual returns in terms of hunting yields and health and, by extension, to nutritional status, a proxy for individual adaptive success. Data were collected in three subsistence-oriented societies: the Tsimane’ (Amazon), the Baka (Congo Basin), and the Punan (Borneo). Results suggest that variations in individual levels of local environmental knowledge relate to individual hunting returns and to self-reported health, but not to nutritional status. We argue that this paradox can be explained through the prevalence of sharing: individuals achieving higher returns to their knowledge transfer them to the rest of the population, which explains the lack of association between knowledge and nutritional status. The finding is in consonance with previous research highlighting the importance of cultural traits favoring group success, but pushes it forward by elucidating the mechanisms through which individual and group level adaptive forces interact. PMID:28104924

Sequence analysis of Jembrana disease virus strains reveals a genetically stable lentivirus.

PubMed

Desport, Moira; Stewart, Meredith E; Mikosza, Andrew S; Sheridan, Carol A; Peterson, Shane E; Chavand, Olivier; Hartaningsih, Nining; Wilcox, Graham E

2007-06-01

Jembrana disease virus (JDV) is a lentivirus associated with an acute disease syndrome with a 20% case fatality rate in Bos javanicus (Bali cattle) in Indonesia, occurring after a short incubation period and with no recurrence of the disease after recovery. Partial regions of gag and pol and the entire env were examined for sequence variation in DNA samples from cases of Jembrana disease obtained from Bali, Sumatra and South Kalimantan in Indonesian Borneo. A high level of nucleotide conservation (97-100%) was observed in gag sequences from samples taken in Bali and Sumatra, indicating that the source of JDV in Sumatra was most likely to have originated from Bali. The pol sequences and, unexpectedly, the env sequences from Bali samples were also well conserved with low nucleotide (96-99%) and amino acid substitutions (95-99%). However, the sample from South Kalimantan (JDV(KAL/01)) contained more divergent sequences, particularly in env (88% identity). Phylogenetic analysis revealed that the JDV(KAL/01)env sequences clustered with the sequence from the Pulukan sample (Bali) from 2001. JDV appears to be remarkably stable genetically and has undergone minor genetic changes over a period of nearly 20 years in Bali despite becoming endemic in the cattle population of the island.

Quality of life among Malaysian mothers with a child with Down syndrome.

PubMed

Geok, Chan Kim; Abdullah, Khatijah Lim; Kee, Ling How

2013-08-01

The purpose of this paper is to examine the quality of life (QOL) among mothers with a child with Down syndrome using The World Health Organization Quality of Life scale instrument. A convenience sample of 161 mothers was accessed through the various institutions which provide interventional or educational programmes to children with disabilities within two of the regions of the Borneo State of Malaysia (Sarawak). Nearly half of the group of mothers perceived their QOL as neither poor nor good (n = 73). An overall QOL score of 14.0 ± 1.84 was obtained. The highest and lowest domain scores were found for social relationship domain (Mean = 14.9 ± 2.1) and environmental support domain (Mean = 13.3 ± 2.1) respectively. Correlation analysis of selected background variables (i.e. locality, education, income and marital status) and overall QOL indicated rho (161) = 0.22-0.28 (P < 0.01). Inverse correlation between maternal age and overall QOL score was indicated, with rho (161) = -0.17 (P < 0.05). Linear regression analysis indicated that the combination of these few variables together accounted for 14.5% of the QOL variability in the sample. Findings point to implications for priorities of care provisions by policy-makers and care professionals in their practice. © 2013 Wiley Publishing Asia Pty Ltd.

Positive body image: inter-ethnic and rural-urban differences among an indigenous sample from Malaysian Borneo.

PubMed

Swami, Viren; Kannan, Kumaraswami; Furnham, Adrian

2012-11-01

Previous studies examining body image from a cross-cultural perspective have tended to neglect samples from different ethnic groups or along a rural-urban continuum. To overcome this limitation, the present study examined positive body image among rural and urban women from three major indigenous ethnic groups in Sabah, Malaysia. A total of 202 women completed the Body Appreciation Scale, as well as measures of media exposure and financial security, and provided their demographic details. s showed that there were significant rural-urban differences in body appreciation, with rural participants having significantly higher body appreciation than urban participants. A comparison with a previous data set of West Malaysian women (Swami & Chamorro-Premuzic, 2008) showed that the current urban sample had significantly lower body appreciation and that the rural group had significantly higher body appreciation. Further results showed that research site (urban vs rural) explained 11.0% of the variance in body appreciation. Participant body mass index and exposure to western forms of media explained an additional 2.0% of the variance. These results suggest that there are differences in body image between rural and urban women. Results are discussed in relation to the promotion of positive body image, particularly in developing societies where health care resources may be limited.

Scent marking in Sunda clouded leopards (Neofelis diardi): novel observations close a key gap in understanding felid communication behaviours

PubMed Central

Allen, Maximilian L.; Wittmer, Heiko U.; Setiawan, Endro; Jaffe, Sarah; Marshall, Andrew J.

2016-01-01

Intraspecific communication is integral to the behavioural ecology of solitary carnivores, but observing and quantifying their communication behaviours in natural environments is difficult. Our systematic literature review found that basic information on scent marking is completely lacking for 23% of all felid species, and information on 21% of other felid species comes solely from one study of captive animals. Here we present results of the first systematic investigation of the scent marking behaviours of Sunda clouded leopards in the wild. Our observations using motion-triggered video cameras in Indonesian Borneo are novel for clouded leopards, and contrary to previous descriptions of their behaviour. We found that clouded leopards displayed 10 distinct communication behaviours, with olfaction, scraping, and cheek rubbing the most frequently recorded. We also showed that males make repeated visits to areas they previously used for marking and that multiple males advertise and receive information at the same sites, potentially enhancing our ability to document and monitor clouded leopard populations. The behaviours we recorded are remarkably similar to those described in other solitary felids, despite tremendous variation in the environments they inhabit, and close a key gap in understanding and interpreting communication behaviours of clouded leopards and other solitary felids. PMID:27739507

Carbonate platform, slope, and basinal deposits of Upper Oligocene, Kalimantan, Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Armin, R.A.; Cutler, W.G.; Mahadi, S.

1987-05-01

Upper Oligocene platform carbonates (Berai Formation) occur extensively on the Barito shelf in southeastern Kalimantan (Borneo) and are flanked northward by coeval slope and basinal deposits (Bongan Formation) which accumulated in the southwestern part of the Kutei basin. Isolated carbonate buildups equivalent to the Berai Formation also occur within the Kutei basin and were probably deposited on basement highs. The distribution of these facies is fairly well constrained by the study of outcrops, wells, and seismic profiles. The Berai Formation consists of diverse limestone types with a wide range of textures and with dominant skeletal components of large foraminifera, redmore » algae, and corals. Deposition of the Berai Formation occurred in moderate- and high-energy shallow-marine conditions. Slope and basin facies occur in extensional basins adjacent to the shelfal carbonates and peripheral to isolated carbonate buildups. Slope deposits consist of hemipelagic claystone, debris-flow conglomerate, calciturbidite, and volcaniclastic intervals. syndepositional downslope transport of slope deposits was an important process, as indicated by intervals containing redeposited debris flows, intraformational truncation surfaces, slide blocks, and associated shear planes. Recurrent movement on basin-margin faults and local volcanism probably perpetuated instability of slope deposits. Basinal deposits consist of calcareous claystone with intercalated thin, distal calciturbidite and volcaniclastic beds.« less

Magnetic susceptibility and dielectric properties of peat in Central Kalimantan, Indonesia

NASA Astrophysics Data System (ADS)

Budi, Pranitha Septiana; Zulaikah, Siti; Hidayat, Arif; Azzahro, Rosyida

2017-07-01

Peatlands dominate almost all regions of Borneo, yet its utilization has not been developed optimally. Any information in this field could be obtained using soil magnetization methods by determining the magnetic succeptibility in terms of magnetic susceptibility value that could describe the source and type of magnetic minerals which could describe the source and type of magnetic minerals. Moreover, the dielectric properties of peat soil were also investigated to determine the level of water content by using the dielectric constant value. Samples was taken at six different locations along Pulang pisau to Berengbengkel. Magnetic susceptibility mass value at these locations ranged between -0.0009 - 0.712 (×10-6 m3/kg). Based on the average magnetic susceptibility value, samples that were taken from T1, T3 and T5 belonged to the type of paramagnetic mineral, while samples which were taken from T2, T4 and T6 belonged to the group of diamagnetic mineral. The low value of magnetic susceptibility of peat was probably derived from the pedogenic process. The average value of peat soil in six locations has a large dielectric constant value that is 28.2 which indicated that there was considerable moisture content due to the hydrophilic nature of peatland which means that the ability of peat in water binding is considerably high.

Degraded lands worth protecting: the biological importance of Southeast Asia's repeatedly logged forests

PubMed Central

Edwards, David P.; Larsen, Trond H.; Docherty, Teegan D. S.; Ansell, Felicity A.; Hsu, Wayne W.; Derhé, Mia A.; Hamer, Keith C.; Wilcove, David S.

2011-01-01

Southeast Asia is a hotspot of imperilled biodiversity, owing to extensive logging and forest conversion to oil palm agriculture. The degraded forests that remain after multiple rounds of intensive logging are often assumed to be of little conservation value; consequently, there has been no concerted effort to prevent them from being converted to oil palm. However, no study has quantified the biodiversity of repeatedly logged forests. We compare the species richness and composition of birds and dung beetles within unlogged (primary), once-logged and twice-logged forests in Sabah, Borneo. Logging had little effect on the overall richness of birds. Dung beetle richness declined following once-logging but did not decline further after twice-logging. The species composition of bird and dung beetle communities was altered, particularly after the second logging rotation, but globally imperilled bird species (IUCN Red List) did not decline further after twice-logging. Remarkably, over 75 per cent of bird and dung beetle species found in unlogged forest persisted within twice-logged forest. Although twice-logged forests have less biological value than primary and once-logged forests, they clearly provide important habitat for numerous bird and dung beetle species. Preventing these degraded forests from being converted to oil palm should be a priority of policy-makers and conservationists. PMID:20685713

Setting up home-based palliative care in countries with limited resources: a model from Sarawak, Malaysia

PubMed Central

Devi, B. C. R.; Corbex, M.

2008-01-01

Background: The provision of palliative care (PC) and opioids is difficult to ensure in remote areas in low- and middle-income countries. We describe here the set up of a home-care program in Sarawak (the Malaysian part of the Borneo Island), where half the population lives in villages that are difficult to access. Methods: The establishment of this program, initiated in 1994 by the Department of Radiotherapy of Sarawak General Hospital, consisted of training, empowering nurses, simplifying referral, facilitating access to medication, and increasing awareness among public and health professionals about PC. Results: The program has been sustainable and cost efficient, serving 936 patients in 2006. The total morphine usage in the program increased from <200 g in 1993 to >1400 g in 2006. The results show that pain medication can be provided even in remote areas with effective organization and empowerment of nurses, who were the most important determinants for the set up of this program. Education of family was also a key aspect. Conclusion: The authors believe that the experience gained in Sarawak may help other regions with low or middle resources in the set up of their PC program especially for their remote rural population. PMID:18641007

Economic analysis of biomass gasification for generating electricity in rural areas in Indonesia

NASA Astrophysics Data System (ADS)

Susanto, H.; Suria, T.; Pranolo, S. H.

2018-03-01

The gaseous fuel from biomass gasification might reduce the consumption of diesel fuel by 70%. The investment cost of the whole unit with a capacity of 45 kWe was about IDR 220 million in 2008 comprised of 24% for gasification unit, 54% for diesel engine and electric generator, 22% for transportation of the whole unit from Bandung to the site in South Borneo. The gasification unit was made in local workshop in Bandung, while the diesel-generator was purchased also in a local market. To anticipate the development of biomass based electricity in remote areas, an economic analysis has been made for implementations in 2019. A specific investment cost of 600 USD/kW has been estimated taking account to the escalation and capacity factors. Using a discounted factor of 11% and biomass cost in the range of 0.03-0.07 USD/kg, the production cost of electricity would be in the range of 0.09-0.16 USD/kWh. This production cost was lower than that of diesel engine fueled with full oil commonly implemented in many remote areas in Indonesia at this moment. This production cost was also lower than the Feed in Tariff in some regions established by Indonesian government in 2017.

A review of the genus Tuberaleyrodes Takahashi (Hemiptera: Aleyrodidae) with description of five new species from Brunei, Hong Kong and Malaysia.

PubMed

Dubey, Anil Kumar; Martin, Jon H

2018-03-28

The whitefly genus Tuberaleyrodes Takahashi is reviewed using types and determined specimens. The generic diagnosis is redefined together with description of five new species: T. bruneiensis Dubey Martin sp. nov. from Brunei, T. crypta Dubey Martin sp. nov. from Hong Kong, and T. ordo Dubey Martin sp. nov., T. aequalis Dubey Martin sp. nov. and T. variabilis Dubey Martin sp. nov. from Malaysia. New species descriptions are accompanied with camera lucida drawings and microphotographs of holotype and paratypes. Tuberaleyrodes actinodaphnis Takahashi is elevated from its status as a variety of T. machili Takahashi to species level. Lectotypes are selected for T. actinodaphnis Takahashi Stat. nov. and T. bobuae Takahashi. Tuberaleyrodes actinodaphnis Takahashi is a new record to Taiwan. A new combination, Tuberaleyrodes glutae (Corbett) Comb. nov. is proposed for Dialeurodes glutae Corbett. Two species, T. glutae (Corbett) and Tuberaleyrodes spiniferosa (Corbett) are re-described, and placement of T. spiniferosa in the genus Tuberaleyrodes is confirmed. The genus Tuberaleyrodes is newly recorded from Borneo and Sulawesi. An identification key to puparia of Tuberaleyrodes species so far described is provided along with the countries of present records. Four plants families viz., Annonaceae, Fabaceae, Myristicaceae and Pentaphylacaeae are recorded as new hosts for Tuberaleyrodes species. New host plant records are indicated.

Late Cretaceous-Early Palaeogene tectonic development of SE Asia

NASA Astrophysics Data System (ADS)

Morley, C. K.

2012-10-01

The Late Cretaceous-Early Palaeogene history of the continental core of SE Asia (Sundaland) marks the time prior to collision of India with Asia when SE Asia, from the Tethys in the west to the Palaeo-Pacific in the east, lay in the upper plate of subduction zones. In Myanmar and Sumatra, subduction was interrupted in the Aptian-Albian by a phase of arc accretion (Woyla and Mawgyi arcs) and in Java, eastern Borneo and Western Sulawesi by collision of continental fragments rifted from northern Australia. Subsequent resumption of subduction in the Myanmar-Thailand sector explains: 1) early creation of oceanic crust in the Andaman Sea in a supra-subduction zone setting ~ 95 Ma, 2) the belt of granite plutons of Late Cretaceous-Early Palaeogene age (starting ~ 88 Ma) in western Thailand and central Myanmar, and 3) amphibolite grade metamorphism between 70 and 80 Ma seen in gneissic outcrops in western and central Thailand, and 4) accretionary prism development in the Western Belt of Myanmar, until glancing collision with the NE corner of Greater India promoted ophiolite obduction, deformation and exhumation of marine sediments in the early Palaeogene. The Ranong strike-slip fault and other less well documented faults, were episodically active during the Late Cretaceous-Palaeogene time. N to NW directed subduction of the Palaeo-Pacific ocean below Southern China, Vietnam and Borneo created a major magmatic arc, associated with rift basins, metamorphic core complexes and strike-slip deformation which continued into the Late Cretaceous. The origin and timing of termination of subduction has recently been explained by collision of a large Luconia continental fragment either during the Late Cretaceous or Palaeogene. Evidence for such a collision is absent from the South China Sea well and seismic reflection record and here collision is discounted. Instead relocation of the subducting margin further west, possibly in response of back-arc extension (which created the Proto-South China Sea) is preferred. Lying between the two subduction related arcs, the Khorat Basin is of predominantly Late Jurassic-Early Cretaceous age but stratigraphic and apatite fission track data also indicates deposition of 1-2 km of Late Cretaceous sediments. The synformal basin geometry probably arose due to the dynamic topography created by converging Tethyan and Palaeo-Pacific subduction zones. The Aptian-Albian slowing of basin subsidence and onset of evaporite deposition coincides with collision of the Mawgyi and Woyla island arcs. Extensive Palaeogene deformation and exhumation (3 + km in places) affected all margins of the Khorat Plateau. Deformation includes folds of the Phu Phan uplift, and strike-slip faults, thrusts and folds on the southern and eastern margins. South of the Khorat Plateau outcrop, and seismic reflection data from the Ton Le Sap Basin (Cambodia), and the Gulf of Thailand, indicate syn-depositional fault-controlled subsidence was important during Cretaceous deposition. The hot, thickened crust developed during the Late Cretaceous-Palaeogene events follows the weak (Indosinian), crustal-scale Inthanon and Sukhothai zones, which persistently guided the location of later structures including Cenozoic extensional, and post-rift basins, and influenced the widespread occurrence of low-angle normal faults, metamorphic core complexes, and eastern Gulf of Thailand super-deep post-rift basins.

Mesoscale modeling of smoke transport over the Southeast Asian Maritime Continent: Coupling of smoke direct radiative feedbacks below and above the low-level clouds

NASA Astrophysics Data System (ADS)

Ge, C.; Wang, J.; Reid, J. S.

2013-12-01

The online-coupled Weather Research and Forecasting model with Chemistry (WRF-Chem) is used to simulate the direct and semi-direct radiative impacts of smoke particles over the southeast Asian Marine Continents (MC, 10°S - 10°N, 90°E-150°E) during October 2006 when a significant El Nino event caused the highest biomass burning activity since 1997. With the use of OC (Organic Carbon) /BC (Black Carbon) ratio of 10 in the smoke emission inventory, the baseline simulation shows that the low-level clouds amplifying effect on smoke absorption led to a warming effect at the top-of-atmosphere (TOA) with a domain/monthly average forcing value of ~20 Wm-2 over the islands of Borneo and Sumatra. The smoke-induced monthly average daytime heating (0.3K) that is largely confined above the low-level clouds results in the local convergence over the smoke source region. This heating-induced convergence coupled with daytime planetary boundary layer turbulent mixing, transports more smoke particles above the planetary boundary layer height (PBLH), hence rendering a positive feedback. This positive feedback contrasts with the decrease of cloud fraction resulted from the combined effects of smoke heating within the cloud layer and the more stability in the boundary layer; the latter can be considered as a negative feedback in which decrease of cloud fraction weakens the heating by smoke particles above the clouds. During nighttime, the elevated smoke layer (above clouds in daytime) is decoupled from boundary layer, and the reduction of PBLH due to the residual surface cooling from the daytime lead to the accumulation of smoke particles near the surface. Because of smoke radiative extinction, on monthly basis, the amount of the solar input at the surface is reduced as large as 60 Wm-2, which lead to the decrease of sensible heat, latent heat, 2-m air temperature, and PBLH by a maximum of 20 Wm-2, 20 Wm-2, 1K, 120 m, respectively. The cloud changes over continents are mostly occurred over the islands of Sumatra and Borneo during the daytime, where the low-level cloud fraction decreases more than 10%. However, the change of local wind (include sea breeze) induced by the smoke radiative feedback leads to more convergence over Karimata Strait and south coastal area of Kalimantan during both daytime and night time; consequently, cloud fraction is increased there up to 20%. The sensitivities with different OC/BC ratio show the importance of the smoke single scattering albedo for the smoke semi-direct effects. A case study on 31 October 2006 further demonstrated a much larger (more than twice of the monthly average) feedback induced by smoke aerosols. The decreased sea breeze during big events can lead to prominent increase (40%) of low-level cloud over coastal water. Lastly, the direct and semi-direct radiative impact of smoke particles over the Southeast Asian Marine Continents is summarized as a conceptual model.

Phylogeography of the smooth-coated otter (Lutrogale perspicillata): distinct evolutionary lineages and hybridization with the Asian small-clawed otter (Aonyx cinereus)

PubMed Central

Moretti, Beatrice; Al-Sheikhly, Omar F.; Guerrini, Monica; Theng, Meryl; Gupta, Brij K.; Haba, Mukhtar K.; Khan, Waseem A.; Khan, Aleem A.; Barbanera, Filippo

2017-01-01

We investigated the phylogeography of the smooth-coated otter (Lutrogale perspicillata) to determine its spatial genetic structure for aiding an adaptive conservation management of the species. Fifty-eight modern and 11 archival (dated 1882–1970) otters sampled from Iraq to Malaysian Borneo were genotyped (mtDNA Cytochrome-b, 10 microsatellite DNA loci). Moreover, 16 Aonyx cinereus (Asian small-clawed otter) and seven Lutra lutra (Eurasian otter) were sequenced to increase information available for phylogenetic reconstructions. As reported in previous studies, we found that L. perspicillata, A. cinereus and A. capensis (African clawless otter) grouped in a clade sister to the genus Lutra, with L. perspicillata and A. cinereus being reciprocally monophyletic. Within L. perspicillata, we uncovered three Evolutionarily Significant Units and proved that L. p. maxwelli is not only endemic to Iraq but also the most recent subspecies. We suggest a revision of the distribution range limits of easternmost L. perspicillata subspecies. We show that smooth-coated otters in Singapore are L. perspicillata x A. cinereus hybrids with A. cinereus mtDNA, the first reported case of hybridization in the wild among otters. This result also provides evidence supporting the inclusion of L. perspicillata and A. cinereus in the genus Amblonyx, thus avoiding the paraphyly of the genus Aonyx. PMID:28128366

Transformation-cost time-series method for analyzing irregularly sampled data

NASA Astrophysics Data System (ADS)

Ozken, Ibrahim; Eroglu, Deniz; Stemler, Thomas; Marwan, Norbert; Bagci, G. Baris; Kurths, Jürgen

2015-06-01

Irregular sampling of data sets is one of the challenges often encountered in time-series analysis, since traditional methods cannot be applied and the frequently used interpolation approach can corrupt the data and bias the subsequence analysis. Here we present the TrAnsformation-Cost Time-Series (TACTS) method, which allows us to analyze irregularly sampled data sets without degenerating the quality of the data set. Instead of using interpolation we consider time-series segments and determine how close they are to each other by determining the cost needed to transform one segment into the following one. Using a limited set of operations—with associated costs—to transform the time series segments, we determine a new time series, that is our transformation-cost time series. This cost time series is regularly sampled and can be analyzed using standard methods. While our main interest is the analysis of paleoclimate data, we develop our method using numerical examples like the logistic map and the Rössler oscillator. The numerical data allows us to test the stability of our method against noise and for different irregular samplings. In addition we provide guidance on how to choose the associated costs based on the time series at hand. The usefulness of the TACTS method is demonstrated using speleothem data from the Secret Cave in Borneo that is a good proxy for paleoclimatic variability in the monsoon activity around the maritime continent.

Lowland biotic attrition revisited: body size and variation among climate change ‘winners’ and ‘losers’

PubMed Central

Strimas-Mackey, Matthew; Mohd-Azlan, Jayasilan; Granados, Alys; Bernard, Henry; Giordano, Anthony J.; Helmy, Olga E.

2017-01-01

The responses of lowland tropical communities to climate change will critically influence global biodiversity but remain poorly understood. If species in these systems are unable to tolerate warming, the communities—currently the most diverse on Earth—may become depauperate (‘biotic attrition’). In response to temperature changes, animals can adjust their distribution in space or their activity in time, but these two components of the niche are seldom considered together. We assessed the spatio-temporal niches of rainforest mammal species in Borneo across gradients in elevation and temperature. Most species are not predicted to experience changes in spatio-temporal niche availability, even under pessimistic warming scenarios. Responses to temperature are not predictable by phylogeny but do appear to be trait-based, being much more variable in smaller-bodied taxa. General circulation models and weather station data suggest unprecedentedly high midday temperatures later in the century; predicted responses to this warming among small-bodied species range from 9% losses to 6% gains in spatio-temporal niche availability, while larger species have close to 0% predicted change. Body mass may therefore be a key ecological trait influencing the identity of climate change winners and losers. Mammal species composition will probably change in some areas as temperatures rise, but full-scale biotic attrition this century appears unlikely. PMID:28100818

Inhibition of fish bacteria pathogen in tilapia using a concoction three of Borneo plant extracts

NASA Astrophysics Data System (ADS)

Hardi, EH; Saptiani, G.; Kusuma, IW; Suwinarti, W.; Sudaryono, A.

2018-04-01

This study was conducted to evaluate the antibacterial activity of concoction Solanum ferox, Boesenbergia pandurata and Zingimber zerumbetextract (SF, BP, and ZZ) to inhibit pathogenic bacteria in tilapia with the each concentrations 600 ppm BP, 900 ppm SF and 200 ppm ZZ. Antibacterial activity was measured by testing the concoction of three plants extract against single isolate Aeromonas hydrophila and Pseudomonas sp. and combined both bacteria (105 colony-forming units per milliliter). In this research, oxytetracycline was used as a control. Clear zone inhibition was observed at 6, 12, 18 and 24 hours after incubation at 30 °C. The results showed that the different concoction of BP: SF: ZZ have inhibitory zones against both single and joint isolate bacteria. The ratio of3:3:4 and 1:8:1 had higher antibacterial activity towards Pseudomonas sp. and 1:1:3 ratios both inhibit joint bacteria. The ZI% higher of concoction extracts against A.hydrophila is 1:1:8; 1:3:1; 3:4:3. The ZI% concoction extracts against Pseudomonas sp. ware 3:3:4 and 1:8:1 ratio. While the two bacteria combined, just 1:1:3 ratio had higher Z%. The conclusion is that a concoction of SF:BP:ZZ is effective to inhibit the growth of A.hydrophila and Pseudomonas sp., even its antibacterial ability is similar to the effectiveness of antibiotic oxytetracycline.

Stratigraphy and age estimate of Neogene shallow marine fossiliferous deposits in Brunei Darussalam (Ambug Hill, Tutong district)

NASA Astrophysics Data System (ADS)

Kocsis, László; Briguglio, Antonino; Roslim, Amajida; Razak, Hazirah; Ćorić, Stjepan; Frijia, Gianluca

2018-06-01

The Ambug Hill in Brunei is an exceptional geological site where a series of siliciclastic rocks crops out with some layers extremely rich in marine fossils. Such fossiliferous outcrops are extremely rare in the northern part of Borneo and their description is of primary importance as their fossil content can be used to correlate the regional depositional sequences with global biostratigraphic zonations. In this work we present for the first time a detailed sedimentary profile completed with Sr-isotopes and biostratigraphic dating. The succession is divided into four sedimentary units. The first unit comprises bioturbated sandstone followed by a second unit of clay-silt rich levels whose first 9.5 m contain rich marine fossil assemblages. Calcareous nannoplankton data indicate a Late Tortonian - Early Messinian (NN11) age, which is confirmed by Sr-isotope dating derived from bivalves giving a numerical age range from 8.3 to 6.2 My. After a major emersion surface, the third sedimentary unit of sand- and siltstone lacks suitable fossils for bio- and isotope stratigraphy. The age of emersion and the related sedimentary gap can be either correlated with the Me1 (7.25 My) or the Me2 (5.73 My) sequence boundary. A fourth, thin sedimentary unit is recognized on the top of the profile with silt- and claystone beds without age diagnostic remains and calcareous fossils.

Detailed spatiotemporal impacts of El Niño on phytoplankton biomass in the South China Sea

NASA Astrophysics Data System (ADS)

Siswanto, Eko; Ye, Haijun; Yamazaki, Dai; Tang, DanLing

2017-04-01

The lagging and leading correlations among satellite observations, reanalyzed biogeophysical data, and the Nino3.4 El Niño index were investigated to reveal the impacts of El Niño on the phytoplankton biomass (chlorophyll a [Chl a]) in the South China Sea (SCS), in an attempt to identify the probable responsible factors in greater spatiotemporal detail. A basin-scale high Chl a concentration during the developing phase of El Niño changed to basin-scale low Chl a during the weakening phase. Cyclonic wind circulation in the northern basin, increased wind speed in the southern basin, and strengthened upwelling off the Vietnamese coast likely caused a basin-scale nutrient increase during the developing phase of an El Niño event; the opposite conditions led to low nutrient levels during the weakening phase. Decreases in Chl a east of the Vietnamese coast and northwest of Borneo Island were due to decreases in nutrients supplied by rivers. These spatiotemporal changes are considered biogeophysical responses to a variety of types of El Niño. Regardless of the El Niño type, reanalyzing biogeophysical data sets during central Pacific warming separately from those during eastern Pacific warming is recommended for a more robust understanding of the detailed spatiotemporal impacts of different El Niño types on the biogeophysical environment of the SCS.

It's not just conflict that motivates killing of orangutans.

PubMed

Davis, Jacqueline T; Mengersen, Kerrie; Abram, Nicola K; Ancrenaz, Marc; Wells, Jessie A; Meijaard, Erik

2013-01-01

We investigated why orangutans are being killed in Kalimantan, Indonesia, and the role of conflict in these killings. Based on an analysis of interview data from over 5,000 respondents in over 450 villages, we also assessed the socio-ecological factors associated with conflict and non-conflict killings. Most respondents never kill orangutans. Those who reported having personally killed an orangutan primarily did so for non-conflict reasons; for example, 56% of these respondents said that the reason they had killed an orangutan was to eat it. Of the conflict-related reasons for killing, the most common reasons orangutans were killed was fear of orangutans or in self-defence. A similar pattern was evident among reports of orangutan killing by other people in the villages. Regression analyses indicated that religion and the percentage of intact forest around villages were the strongest socio-ecological predictors of whether orangutans were killed for conflict or non-conflict related reasons. Our data indicate that between 44,170 and 66,570 orangutans were killed in Kalimantan within the respondents' active hunting lifetimes: between 12,690 and 29,024 for conflict reasons (95%CI) and between 26,361 and 41,688 for non-conflict reasons (95% CI). These findings confirm that habitat protection alone will not ensure the survival of orangutans in Indonesian Borneo, and that effective reduction of orangutan killings is urgently needed.

It’s Not Just Conflict That Motivates Killing of Orangutans

PubMed Central

Davis, Jacqueline T.; Mengersen, Kerrie; Abram, Nicola K.; Ancrenaz, Marc; Wells, Jessie A.; Meijaard, Erik

2013-01-01

We investigated why orangutans are being killed in Kalimantan, Indonesia, and the role of conflict in these killings. Based on an analysis of interview data from over 5,000 respondents in over 450 villages, we also assessed the socio-ecological factors associated with conflict and non-conflict killings. Most respondents never kill orangutans. Those who reported having personally killed an orangutan primarily did so for non-conflict reasons; for example, 56% of these respondents said that the reason they had killed an orangutan was to eat it. Of the conflict-related reasons for killing, the most common reasons orangutans were killed was fear of orangutans or in self-defence. A similar pattern was evident among reports of orangutan killing by other people in the villages. Regression analyses indicated that religion and the percentage of intact forest around villages were the strongest socio-ecological predictors of whether orangutans were killed for conflict or non-conflict related reasons. Our data indicate that between 44,170 and 66,570 orangutans were killed in Kalimantan within the respondents’ active hunting lifetimes: between 12,690 and 29,024 for conflict reasons (95%CI) and between 26,361 and 41,688 for non-conflict reasons (95% CI). These findings confirm that habitat protection alone will not ensure the survival of orangutans in Indonesian Borneo, and that effective reduction of orangutan killings is urgently needed. PMID:24130707

Reassessment of forest area and its scoring as a permanent production forest

NASA Astrophysics Data System (ADS)

Sudarmadji, T.; Hartati, W.

2018-04-01

Along with the increasing demand for tropical timber, the need for wood raw materials is not enough just to rely on natural forests, and therefore in the early 1990s began to be developed timber estates concessions. The designation of forest areas can basically be altered using procedures established by the Ministry of and Forestry. PT Permata Borneo Abadi (PBA) as the holder of IUPHHK-HT covering 38.680 ha intends to propose changing of forest function from limited production forest (HPT) and convertible production forest (HPK) into permanent production forest (HP) to be developed as timber estates with fast growing species. Reassessment of forest function is intended to formulate official documents aimed to reevaluate IUPHHK-HT especially HPT and HPK. The assessment is based on established criteria and standard values (scores) covering topographic, soil and vegetation conditions as well as regional rainfall distribution. The assessment results indicate that there is an area with a slope of >40% of 840.18 ha with score >175 which must therefore as protected areas. The area of HPT that scored between 125-174 remains HPT is 12.287,77 ha. The area of HPT that scored <125 is 27.637.80 ha and therefore is possible to be converted into HP. The results can be used as an important basis for intensive forest management synergically with conservation efforts.

Potential natural sensitizers extracted from the skin of Canarium odontophyllum fruits for dye-sensitized solar cells.

PubMed

Lim, Andery; Kumara, N T R N; Tan, Ai Ling; Mirza, Aminul Huq; Chandrakanthi, R L N; Petra, Mohammad Iskandar; Ming, Lim Chee; Senadeera, G K R; Ekanayake, Piyasiri

2015-03-05

Possibility of use of dye extract from skin samples of a seasonal, indigenous fruit from Borneo, namely Canarium odontophyllum, in dye sensitized solar cells (DSSCs) are explored. Three main groups of flavonoid pigments are detected and these pigments exhibit different UV-vis absorption properties, and hence showing different light harvesting capabilities. When applied in DSSCs. The detected pigment constituents of the extract consist of aurone (maritimein), anthocyanidin (pelargonidin) and anthocyanidin (cyanidin derivatives). When tested in DSSC, the highest conversion efficiency of 1.43% is exhibited by cyanidin derivatives, and this is followed by conversion efficiencies of 0.51% and 0.79% for aurone and pelargonidin, respectively. It is shown that individual pigments, like cyanidin derivatives and pelargonidin, exhibit higher power conversion efficiency when compared to that of C.odontophyllum skin pigment mixture (with a conversion efficiency of only 0.68%). The results indicate a possibility of masking effects of the pigments when used as a mixture. The acidification of C.odontophyllum skin pigments with concentrated hydrochloric acid improves the conversion efficiency of the mixture from 0.68% to 0.99%. The discussion in this paper will draw data and observations from the variation in absorption and adsorption properties, the HOMO-LUMO levels, the energy band gaps and the functional group compositions of the detected flavonoids. Copyright © 2014 Elsevier B.V. All rights reserved.

Evaluating the effectiveness of palm oil certification in delivering multiple sustainability objectives

NASA Astrophysics Data System (ADS)

Morgans, Courtney L.; Meijaard, Erik; Santika, Truly; Law, Elizabeth; Budiharta, Sugeng; Ancrenaz, Marc; Wilson, Kerrie A.

2018-06-01

Industrial oil palm plantations in South East Asia have caused significant biodiversity losses and perverse social outcomes. To address concerns over plantation practices and in an attempt to improve sustainability through market mechanisms, civil society organisations and industry representatives developed the Roundtable on Sustainable Palm Oil (RSPO) in 2004. The effectiveness of RSPO in improving the sustainability of the palm oil industry is frequently debated and to date, few quantitative analyses have been undertaken to assess how successful RSPO has been in delivering the social, economic and environmental sustainability outcomes it aims to address. With the palm oil industry continuing to expand in South East Asia and significant estates being planted in Africa and South America, this paper evaluates the effectiveness of RSPO plantations compared to non-certified plantations by assessing the relative performance of several key sustainability metrics compared to business as usual practices. Using Indonesian Borneo (Kalimantan) as a case study, a novel dataset of RSPO concessions was developed and causal analysis methodologies employed to evaluate the environmental, social and economic sustainability of the industry. No significant difference was found between certified and non-certified plantations for any of the sustainability metrics investigated, however positive economic trends including greater fresh fruit bunch yields were revealed. To achieve intended outcomes, RSPO principles and criteria are in need of substantial improvement and rigorous enforcement.

Phytochemicals and antidiabetic activity of Eusideroxylon zwageri stem bark collected from East Kalimantan, Indonesia

NASA Astrophysics Data System (ADS)

Kusuma, I. W.; Rahmini; Ramadhan, R.; Rahmawati, N.; Suwasono, R. A.; Sari, NM

2018-04-01

Eusideroxylon zwagery (Lauraceae), a tropical tree species known as ulin or borneo iron wood and traditionally used for the treatment of diabetes in the Ethnic of Kutai. Plant extract was prepared by maceration using ethanol. The plant extract was evaluated its DPPH and superoxide radicals scavenging activity, the inhibition on α-glucosidase and α-amylase activity as antidiabetic potential and the analysis of the total phenolic, total flavonoids and proanthocyanidin contents. The ethanolic extract of the stem bark was 8.62% on the dry weight basis. The IC50 values of antioxidant activity of the extract in DPPH and superoxide radical scavenging mechanisms were 44.90 µg/ml and 30.47 µg/ml. In antidiabetic assay, the E. zwageri stem bark extract showed IC50 value 58.45µg/ml in ɑ-glucosidase inhibition, and 9.04 µg/ml in ɑ-amylase inhibition. Quercetin, an antidiabetic activity-having flavonoid, displayed IC50 values 2.00 µg/ml and 4.04 µg/ml in ɑ-glucosidase and ɑ-amylase inhibitory assays. In phytochemical assay, the extract had 31.28 GAE/g extract (mg), 30.48 CE/g extract (mg) and 183.3 PE/g extract (mg) for the total phenolic, total flavonoid and total proanthocyanidin contents. The limited reports of E. zwageri indicated the needs to search the active compounds from plant as potential antidiabetic agents by considering plant conservation status.

Chemical profiles of body surfaces and nests from six Bornean stingless bee species.

PubMed

Leonhardt, Sara Diana; Blüthgen, Nico; Schmitt, Thomas

2011-01-01

Stingless bees (Apidae: Meliponini) are the most diverse group of Apid bees and represent common pollinators in tropical ecosystems. Like honeybees they live in large eusocial colonies and rely on complex chemical recognition and communication systems. In contrast to honeybees, their ecology and especially their chemical ecology have received only little attention, particularly in the Old World. We previously have analyzed the chemical profiles of six paleotropical stingless bee species from Borneo and revealed the presence of species-specific cuticular terpenes- an environmentally derived compound class so far unique among social insects. Here, we compared the bees' surface profiles to the chemistry of their nest material. Terpenes, alkanes, and alkenes were the dominant compound groups on both body surfaces and nest material. However, bee profiles and nests strongly differed in their chemical composition. Body surfaces thus did not merely mirror nests, rendering a passive compound transfer from nests to bees unlikely. The difference between nests and bees was particularly pronounced when all resin-derived compounds (terpenes) were excluded and only genetically determined compounds were considered. When terpenes were included, bee profiles and nest material still differed, because whole groups of terpenes (e.g., sesquiterpenes) were found in nest material of some species, but missing in their chemical profile, indicating that bees are able to influence the terpene composition both in their nests and on their surfaces.

Geographical Variation in Community Divergence: Insights from Tropical Forest Monodominance by Ectomycorrhizal Trees.

PubMed

Fukami, Tadashi; Nakajima, Mifuyu; Fortunel, Claire; Fine, Paul V A; Baraloto, Christopher; Russo, Sabrina E; Peay, Kabir G

2017-08-01

Convergence occurs in both species traits and community structure, but how convergence at the two scales influences each other remains unclear. To address this question, we focus on tropical forest monodominance, in which a single, often ectomycorrhizal (EM) tree species occasionally dominates forest stands within a landscape otherwise characterized by diverse communities of arbuscular mycorrhizal (AM) trees. Such monodominance is a striking potential example of community divergence resulting in alternative stable states. However, it is observed only in some tropical regions. A diverse suite of AM and EM trees locally codominate forest stands elsewhere. We develop a hypothesis to explain this geographical difference using a simulation model of plant community assembly. Simulation results suggest that in a region with a few EM species (e.g., South America), EM trees experience strong selection for convergent traits that match the abiotic conditions of the environment. Consequently, EM species successfully compete against other species to form monodominant stands via positive plant-soil feedbacks. By contrast, in a region with many EM species (e.g., Southeast Asia), species maintain divergent traits because of complex plant-soil feedbacks, with no species having traits that enable monodominance. An analysis of plant trait data from Borneo and Peruvian Amazon was inconclusive. Overall, this work highlights the utility of geographical comparison in understanding the relationship between trait convergence and community convergence.

Variability of Indonesian Throughflow and Borneo Runoff During the Last 14 kyr

NASA Astrophysics Data System (ADS)

Hendrizan, Marfasran; Kuhnt, Wolfgang; Holbourn, Ann

2017-10-01

We present a high-resolution ( 20 to 100 years temporal resolution) reconstruction of hydrological changes in the Makassar Strait over the last 14 kyr from Core SO217-18517 retrieved off the Mahakam Delta (1°32.198'S, 117°33.756'E; 698 m water depth) during the SO217 Makassar-Java Cruise. Sea surface temperatures, based on Mg/Ca of Globigerinoides ruber and alkenone UK'37, and seawater δ18O reconstructions, based on G. ruber δ18O and Mg/Ca, in combination with sortable silt grain size measurements and X-ray fluorescence (XRF) core scanner derived elemental data provide evidence for increased precipitation during the Bølling-Allerød (BA) and early Holocene and for warmer and more saline surface waters and a decrease in the intensity of the Indonesian Throughflow (ITF) during the Younger Dryas (YD). XRF derived Log (Zr/Rb) records, sortable silt data and increased sedimentation rates indicate decreased winnowing, interpreted as a slowdown of the ITF thermocline flow during the YD. We attribute this decline in ITF intensity to slowdown of the Atlantic meridional overturning circulation during the YD. We suggest that changes in Makassar Strait surface hydrology during this interval of Northern Hemisphere cooling and Southern Hemisphere warming were related to a southward displacement of the Intertropical Convergence Zone.

The impact of the diurnal cycle on the propagation of Madden-Julian Oscillation convection across the Maritime Continent

DOE PAGES

Hagos, Samson M.; Zhang, Chidong; Feng, Zhe; ...

2016-09-19

Influences of the diurnal cycle of convection on the propagation of the Madden-Julian Oscillation (MJO) across the Maritime Continent (MC) are examined using cloud-permitting regional model simulations and observations. A pair of ensembles of control (CONTROL) and no-diurnal cycle (NODC) simulations of the November 2011 MJO episode are performed. In the CONTROL simulations, the MJO signal is weakened as it propagates across the MC, with much of the convection stalling over the large islands of Sumatra and Borneo. In the NODC simulations, where the incoming shortwave radiation at the top of the atmosphere is maintained at its daily mean value,more » the MJO signal propagating across the MC is enhanced. Examination of the surface energy fluxes in the simulations indicates that in the presence of the diurnal cycle, surface downwelling shortwave radiation in CONTROL simulations is larger because clouds preferentially form in the afternoon. Furthermore, the diurnal co-variability of surface wind speed and skin temperature results in a larger sensible heat flux and a cooler land surface in CONTROL compared to NODC simulations. Here, an analysis of observations indicates that the modulation of the downwelling shortwave radiation at the surface by the diurnal cycle of cloudiness negatively projects on the MJO intraseasonal cycle and therefore disrupts the propagation of the MJO across the MC.« less

Comparison of genetic characteristics and pathogenicity of Lactococcus garvieae isolated from aquatic animals in Taiwan.

PubMed

Tsai, Ming-An; Wang, Pei-Chyi; Liaw, Li-Ling; Yoshida, Terutoyo; Chen, Shih-Chu

2012-12-03

Seventy-six Taiwanese bacterial isolates including 74 from diseased, cultured, aquatic animals (54 grey mullet Mugil cephalus, 3 basket mullet Chelon alatus, 2 tilapia Oreochromis niloticus, 1 grouper Epinephelus coioides, 2 yellowfin seabream Acanthopagrus latus, 1 Borneo mullet Chelon macrolepis, 1 bullfrog Rana catesbeiana, 1 Japanese eel Anguilla japonica, and 9 giant freshwater prawns Macrobrachium rosenbergii), 1 wild-caught seafood species (squid muscle collected from a restaurant) and 1 human isolate (from a patient with a history of consuming raw squid in the previously mentioned restaurant), all collected between 1999 and 2006, were confirmed by PCR assay to be Lactococcus garvieae. The phenotypic characterization was determined by rabbit anti-KG+ and KG- serums, and 74 of the 76 Taiwanese strains displayed a KG- phenotype. The genetic characterization was investigated by pulsed-field gel electrophoresis (PFGE). Genomic DNA was digested with restriction endonucleases ApaI and SmaI and separated by PFGE. Ten different L. garvieae pulsotypes were identified. Predominant pulsotypes A1a/S1a were obtained from >96% of strains (52 of 54) from grey mullet, demonstrating a clonal dissemination of L. garvieae in grey mullet in Taiwan. In experimental challenges with grey mullet and tilapia, L. garvieae pulsotypes A1/S1 and A11/S11 showed higher virulence compared with other pulsotypes.

Effects of Pleistocene glaciations and rivers on the population structure of Bornean orangutans (Pongo pygmaeus)

PubMed Central

Arora, Natasha; Nater, Alexander; van Schaik, Carel P.; Willems, Erik P.; van Noordwijk, Maria A.; Goossens, Benoit; Morf, Nadja; Bastian, Meredith; Knott, Cheryl; Morrogh-Bernard, Helen; Kuze, Noko; Kanamori, Tomoko; Pamungkas, Joko; Perwitasari-Farajallah, Dyah; Verschoor, Ernst; Warren, Kristin; Krützen, Michael

2010-01-01

Sundaland, a tropical hotspot of biodiversity comprising Borneo and Sumatra among other islands, the Malay Peninsula, and a shallow sea, has been subject to dramatic environmental processes. Thus, it presents an ideal opportunity to investigate the role of environmental mechanisms in shaping species distribution and diversity. We investigated the population structure and underlying mechanisms of an insular endemic, the Bornean orangutan (Pongo pygmaeus). Phylogenetic reconstructions based on mtDNA sequences from 211 wild orangutans covering the entire range of the species indicate an unexpectedly recent common ancestor of Bornean orangutans 176 ka (95% highest posterior density, 72–322 ka), pointing to a Pleistocene refugium. High mtDNA differentiation among populations and rare haplotype sharing is consistent with a pattern of strong female philopatry. This is corroborated by isolation by distance tests, which show a significant correlation between mtDNA divergence and distance and a strong effect of rivers as barriers for female movement. Both frequency-based and Bayesian clustering analyses using as many as 25 nuclear microsatellite loci revealed a significant separation among all populations, as well as a small degree of male-mediated gene flow. This study highlights the unique effects of environmental and biological features on the evolutionary history of Bornean orangutans, a highly endangered species particularly vulnerable to future climate and anthropogenic change as an insular endemic. PMID:21098261

Effects of Pleistocene glaciations and rivers on the population structure of Bornean orangutans (Pongo pygmaeus).

PubMed

Arora, Natasha; Nater, Alexander; van Schaik, Carel P; Willems, Erik P; van Noordwijk, Maria A; Goossens, Benoit; Morf, Nadja; Bastian, Meredith; Knott, Cheryl; Morrogh-Bernard, Helen; Kuze, Noko; Kanamori, Tomoko; Pamungkas, Joko; Perwitasari-Farajallah, Dyah; Verschoor, Ernst; Warren, Kristin; Krützen, Michael

2010-12-14

Sundaland, a tropical hotspot of biodiversity comprising Borneo and Sumatra among other islands, the Malay Peninsula, and a shallow sea, has been subject to dramatic environmental processes. Thus, it presents an ideal opportunity to investigate the role of environmental mechanisms in shaping species distribution and diversity. We investigated the population structure and underlying mechanisms of an insular endemic, the Bornean orangutan (Pongo pygmaeus). Phylogenetic reconstructions based on mtDNA sequences from 211 wild orangutans covering the entire range of the species indicate an unexpectedly recent common ancestor of Bornean orangutans 176 ka (95% highest posterior density, 72-322 ka), pointing to a Pleistocene refugium. High mtDNA differentiation among populations and rare haplotype sharing is consistent with a pattern of strong female philopatry. This is corroborated by isolation by distance tests, which show a significant correlation between mtDNA divergence and distance and a strong effect of rivers as barriers for female movement. Both frequency-based and Bayesian clustering analyses using as many as 25 nuclear microsatellite loci revealed a significant separation among all populations, as well as a small degree of male-mediated gene flow. This study highlights the unique effects of environmental and biological features on the evolutionary history of Bornean orangutans, a highly endangered species particularly vulnerable to future climate and anthropogenic change as an insular endemic.

Sea level rise along Malaysian coasts due to the climate change

NASA Astrophysics Data System (ADS)

Luu, Quang-Hung; Tkalich, Pavel; Tay, Tzewei

2015-04-01

Malaysia consists of two major parts, a mainland on the Peninsular Malaysia and the East Malaysia on the Borneo Island. Their surrounding waters connect the Andaman Sea located northeast of the Indian Ocean to the Celebes Sea in the western tropical Pacific Ocean through the southern East Sea of Vietnam/South China Sea. As a result, inter-annual sea level in the Malaysian waters is governed by various regional phenomena associated with the adjacent parts of the Indian and Pacific Oceans. We estimated sea level rise (SLR) rate in the domain using tide gauge records often being gappy. To reconstruct the missing data, two methods are used: (i) correlating sea level with climate indices El Niño-Southern Oscillation (ENSO) and Indian Ocean Dipole (IOD), and (ii) filling the gap using records of neighboring tide gauges. Latest vertical land movements have been acquired to derive geocentric SLR rates. Around the Peninsular Malaysia, geocentric SLR rates in waters of Malacca Strait and eastern Peninsular Malaysia during 1986-2011 are found to be 3.9±3.3 mm/year and 4.2 ± 2.5 mm/year, respectively; while in the East Malaysia waters the rate during 1988-2011 is 6.3 ± 4.0 mm/year. These rates are arguably higher than global tendency for the same periods. For the overlapping period 1993-2011, the rates are consistent with those obtained using satellite altimetry.

The mongoose, the pheasant, the pox, and the retrovirus.

PubMed

Etienne, Lucie; Emerman, Michael

2013-01-01

Paleovirology is the study of ancient viruses. The existence of a paleovirus can sometimes be detected by virtue of its accidental insertion into the germline of different animal species, which allows one to date when the virus actually existed. However, the ancient and the modern often connect, as modern viruses have unexpected origins that can be traced to ancient infections. The genomes of two species of mongooses and an egg-laying mammal called an echidna show that a virus currently present in poultry, the reticuloendotheliosis virus (REV), is actually of ancient exotic mammalian origin. REV apparently spread to poultry through a circuitous route involving the isolation of malaria parasites from a pheasant from Borneo housed at the Bronx Zoo that was contaminated with REV. Repeated passage of this virus in poultry adapted the virus to its new host. At some point, the virus got inserted into another virus, called fowlpox virus, which has spread back into the wild. Although REV may still exist somewhere in a mammalian host, its modern form links an 8 million-year-old infection of the ancestor of a mongoose to a virus that now is circulating in wild birds through malaria studies in the mid-20(th) century. These lessons of ancient and modern viruses have implications for modern human pandemics from viral reservoirs and for human interventions that may come with unintended consequences.

Ecological importance of sedges: a survey of the Australasian Cyperaceae genus Lepidosperma

PubMed Central

Barrett, Russell L.

2013-01-01

Background Sedges (Cyperaceae) form an important ecological component of many ecosystems around the world. Sword and rapier sedges (genus Lepidosperma) are common and widespread components of the southern Australian and New Zealand floras, also occurring in New Caledonia, West Papua, Borneo, Malaysia and southern China. Sedge ecology is seldom studied and no comprehensive review of sedge ecology exists. Lepidosperma is unusual in the Cyperaceae with the majority of species occurring in dryland habitats. Scope Extensive review of ecological literature and field observations shows Lepidosperma species to be important components of many ecosystems, often dominating understorey and sedge-rich communities. For the first time, a detailed ecological review of a Cyperaceae genus is presented. Conclusions Lepidosperma species are long-lived perennials with significant abundance and persistence in the landscape. Speciation patterns in the genus are of considerable interest due to complex biogeographical patterns and a high degree of habitat specificity. Potential benefits exist for medicinal products identified from several Lepidosperma species. Over 178 organisms, including 26 mammals, 42 birds, six reptiles, five amphibians, eight arachnids, 75 insects, three crustaceans and 13 fungi, are found to be dependent on, or making use of, Lepidosperma species. A significant relationship exists between Lepidosperma species and the moth genus Elachista. Implications for the conservation and ecology of both sedges and associated species are discussed. PMID:23378523

Chemical contamination of green turtle (Chelonia mydas) eggs in peninsular Malaysia: implications for conservation and public health.

PubMed

van de Merwe, Jason P; Hodge, Mary; Olszowy, Henry A; Whittier, Joan M; Ibrahim, Kamarruddin; Lee, Shing Y

2009-09-01

Persistent organic pollutants (POPs)-such as organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs), and polybrominated diphenyl ethers (PBDEs)-and heavy metals have been reported in sea turtles at various stages of their life cycle. These chemicals can disrupt development and function of wildlife. Furthermore, in areas such as Peninsular Malaysia, where the human consumption of sea turtle eggs is prevalent, egg contamination may also have public health implications. In the present study we investigated conservation and human health risks associated with the chemical contamination of green turtle (Chelonia mydas) eggs in Peninsular Malaysia. Fifty-five C. mydas eggs were collected from markets in Peninsular Malaysia and analyzed for POPs and heavy metals. We conducted screening risk assessments (SRAs) and calculated the percent of acceptable daily intake (ADI) for POPs and metals to assess conservation and human health risks associated with egg contamination. C. mydas eggs were available in 9 of the 33 markets visited. These eggs came from seven nesting areas from as far away as Borneo Malaysia. SRAs indicated a significant risk to embryonic development associated with the observed arsenic concentrations. Furthermore, the concentrations of coplanar PCBs represented 3 300 times the ADI values set by the World Health Organization. The concentrations of POPs and heavy metals reported in C. mydas eggs from markets in Peninsular Malaysia pose considerable risks to sea turtle conservation and human health.

Lowland biotic attrition revisited: body size and variation among climate change 'winners' and 'losers'.

PubMed

Brodie, Jedediah F; Strimas-Mackey, Matthew; Mohd-Azlan, Jayasilan; Granados, Alys; Bernard, Henry; Giordano, Anthony J; Helmy, Olga E

2017-01-25

The responses of lowland tropical communities to climate change will critically influence global biodiversity but remain poorly understood. If species in these systems are unable to tolerate warming, the communities-currently the most diverse on Earth-may become depauperate ('biotic attrition'). In response to temperature changes, animals can adjust their distribution in space or their activity in time, but these two components of the niche are seldom considered together. We assessed the spatio-temporal niches of rainforest mammal species in Borneo across gradients in elevation and temperature. Most species are not predicted to experience changes in spatio-temporal niche availability, even under pessimistic warming scenarios. Responses to temperature are not predictable by phylogeny but do appear to be trait-based, being much more variable in smaller-bodied taxa. General circulation models and weather station data suggest unprecedentedly high midday temperatures later in the century; predicted responses to this warming among small-bodied species range from 9% losses to 6% gains in spatio-temporal niche availability, while larger species have close to 0% predicted change. Body mass may therefore be a key ecological trait influencing the identity of climate change winners and losers. Mammal species composition will probably change in some areas as temperatures rise, but full-scale biotic attrition this century appears unlikely. © 2017 The Author(s).

The Distribution and Population Density of Bornean Tarsier, "Tarsius Bancanus Borneanus (Elliot)" in Secondary and Rehabilitated Forests of Universiti Putra Malaysia, Bintulu Sarawak Campus, Sarawak, Malaysia.

PubMed

Sahimi, Hani Nabilia Muhd; Chubo, John Keen; Top Mohd Tah, Marina Mohd; Saripuddin, Noor Bahiah; Ab Rahim, Siti Sarah

2018-03-01

Tarsius bancanus borneanus was first reported by Elliot in 1990 which an endemic species that can be found on the Island of Borneo consisting of Sabah and Sarawak of Malaysia, Brunei Darussalam and Kalimantan, Indonesia. This sub-species has been listed as a totally protected animal under the Sarawak Wild Life Protection Ordinance (1998) and vulnerable by the International Union for Conservation of Nature (IUCN). The present study was conducted at Universiti Putra Malaysia Bintulu Campus (UPMKB), Sarawak from October 2014 till March 2015. Through mark and recapture sampling covering an area of 37 ha of secondary forest patches and 7.13 ha of rehabilitated forest, a total of 16 tarsiers were captured using mist nets while one tarsier was recapture. The population density was 38 individuals/km 2 was captured using mist nets in the secondary forest while 28 individuals/km 2 was recorded for the rehabilitated forest. Using the catch per unit effort (net hour) method, the average time for capturing tarsiers in the secondary forest patches was 26.6 net hour per animal and 30.0 net hour per animal in the rehabilitated forest. The presented results provides information on the presence of tarsiers in both the secondary and rehabilitated forests of UPMKB, Sarawak, Malaysia which underlines the conservation value of these forested areas.

The Distribution and Population Density of Bornean Tarsier, “Tarsius Bancanus Borneanus (Elliot)” in Secondary and Rehabilitated Forests of Universiti Putra Malaysia, Bintulu Sarawak Campus, Sarawak, Malaysia

PubMed Central

Sahimi, Hani Nabilia Muhd; Chubo, John Keen; Top @ Mohd. Tah, Marina Mohd.; Saripuddin, Noor Bahiah; Ab Rahim, Siti Sarah

2018-01-01

Tarsius bancanus borneanus was first reported by Elliot in 1990 which an endemic species that can be found on the Island of Borneo consisting of Sabah and Sarawak of Malaysia, Brunei Darussalam and Kalimantan, Indonesia. This sub-species has been listed as a totally protected animal under the Sarawak Wild Life Protection Ordinance (1998) and vulnerable by the International Union for Conservation of Nature (IUCN). The present study was conducted at Universiti Putra Malaysia Bintulu Campus (UPMKB), Sarawak from October 2014 till March 2015. Through mark and recapture sampling covering an area of 37 ha of secondary forest patches and 7.13 ha of rehabilitated forest, a total of 16 tarsiers were captured using mist nets while one tarsier was recapture. The population density was 38 individuals/km2 was captured using mist nets in the secondary forest while 28 individuals/km2 was recorded for the rehabilitated forest. Using the catch per unit effort (net hour) method, the average time for capturing tarsiers in the secondary forest patches was 26.6 net hour per animal and 30.0 net hour per animal in the rehabilitated forest. The presented results provides information on the presence of tarsiers in both the secondary and rehabilitated forests of UPMKB, Sarawak, Malaysia which underlines the conservation value of these forested areas. PMID:29644021

Continental Shelf Sediments of Sarawak, Malaysian Borneo

PubMed Central

Masron, Tarmiji; Rumpet, Richard; Musel, Jamil

2017-01-01

Sediment distributions in deep sea influence the benthic community structure and thus play an important role in shaping the marine ecosystem. Several studies on sediment characteristics had been conducted in South China Sea (SCS), but only limited to coastal areas of regions within SCS territories. Therefore, this study was carried out to analyze the benthic sediment profile in an area beyond 12 nautical miles off the coast of Sarawak, southern SCS. Sediment samples were collected from 31 stations, comprising three depth ranges: (I) 20–50 m, (II) 50–100 m, and (III) 100–200 m. The total organic matter (TOM) contents were determined and subjected to dry and wet sieving methods for particle size analysis. TOM contents in the deep area (>50 m) were significantly higher (p = 0.05) and positively correlated (r = 0.73) with silt-clay fraction. About 55% and 82% of stations in strata II and III, respectively, were dominated by silt-clay fractions (<63 μm mean diameter), coherent with TOM data. In addition, sediments in the deep area (>50 m) tend to be poorly sorted, very fine skewed, and platykurtic. Unlike data obtained 20 years ago which reported high content of silt-clay (58%), this study recorded a lower content (35%); therefore, changes in sediment load had been observed in southern SCS. PMID:29075660

Competition can lead to unexpected patterns in tropical ant communities

NASA Astrophysics Data System (ADS)

Ellwood, M. D. Farnon; Blüthgen, Nico; Fayle, Tom M.; Foster, William A.; Menzel, Florian

2016-08-01

Ecological communities are structured by competitive, predatory, mutualistic and parasitic interactions combined with chance events. Separating deterministic from stochastic processes is possible, but finding statistical evidence for specific biological interactions is challenging. We attempt to solve this problem for ant communities nesting in epiphytic bird's nest ferns (Asplenium nidus) in Borneo's lowland rainforest. By recording the frequencies with which each and every single ant species occurred together, we were able to test statistically for patterns associated with interspecific competition. We found evidence for competition, but the resulting co-occurrence pattern was the opposite of what we expected. Rather than detecting species segregation-the classical hallmark of competition-we found species aggregation. Moreover, our approach of testing individual pairwise interactions mostly revealed spatially positive rather than negative associations. Significant negative interactions were only detected among large ants, and among species of the subfamily Ponerinae. Remarkably, the results from this study, and from a corroborating analysis of ant communities known to be structured by competition, suggest that competition within the ants leads to species aggregation rather than segregation. We believe this unexpected result is linked with the displacement of species following asymmetric competition. We conclude that analysing co-occurrence frequencies across complete species assemblages, separately for each species, and for each unique pairwise combination of species, represents a subtle yet powerful way of detecting structure and compartmentalisation in ecological communities.

Transformation-cost time-series method for analyzing irregularly sampled data.

PubMed

Ozken, Ibrahim; Eroglu, Deniz; Stemler, Thomas; Marwan, Norbert; Bagci, G Baris; Kurths, Jürgen

2015-06-01

Irregular sampling of data sets is one of the challenges often encountered in time-series analysis, since traditional methods cannot be applied and the frequently used interpolation approach can corrupt the data and bias the subsequence analysis. Here we present the TrAnsformation-Cost Time-Series (TACTS) method, which allows us to analyze irregularly sampled data sets without degenerating the quality of the data set. Instead of using interpolation we consider time-series segments and determine how close they are to each other by determining the cost needed to transform one segment into the following one. Using a limited set of operations-with associated costs-to transform the time series segments, we determine a new time series, that is our transformation-cost time series. This cost time series is regularly sampled and can be analyzed using standard methods. While our main interest is the analysis of paleoclimate data, we develop our method using numerical examples like the logistic map and the Rössler oscillator. The numerical data allows us to test the stability of our method against noise and for different irregular samplings. In addition we provide guidance on how to choose the associated costs based on the time series at hand. The usefulness of the TACTS method is demonstrated using speleothem data from the Secret Cave in Borneo that is a good proxy for paleoclimatic variability in the monsoon activity around the maritime continent.

Trends of breast cancer treatment in Sabah, Malaysia: a problem with lack of awareness.

PubMed

Leong, B D K; Chuah, J A; Kumar, V M; Rohamini, S; Siti, Z S; Yip, C H

2009-08-01

Sabah, formerly known as North Borneo, is part of East Malaysia. 52.2 percent of patients with breast cancer in Sabah presented at advanced stages and up to 20.4 percent of patients defaulted proper treatment, opting for traditional therapy. We performed a two-year prospective study looking at the treatment trends of breast cancer in Sabah. Our subjects were all newly-diagnosed breast cancer cases seen at the hospital in 2005 and 2006. Type of surgery, chemotherapy, radiotherapy, hormonal therapy and surgical complication for each patient were studied. Out of 186 newly-diagnosed cases, 152 (81.7 percent) had surgery, 126 (67.7 percent) had chemotherapy, 118 (63.4 percent) had radiotherapy and 92 (49.5 percent) had hormonal therapy. 18.3 percent did not have surgery either due to refusal of treatment or advanced disease. They were more likely to be non-Chinese (91.1 percent, p-value is 0.02). Only 15.8 percent had breast-conserving surgery. The most frequent surgical complication was seroma formation (15.0 percent) . The commonest chemotherapy regime and hormonal therapy were anthracycline-based regime (88.1 percent) and tamoxifen (95.8 percent), respectively. The proportion of breast-conserving surgery and usage of modern adjuvant therapies are low in Sabah. This can be attributed to lack of breast cancer awareness leading to late presentation and refusal of treatment, coupled with insufficient health service funding.

Methodological issues and preliminary results from a combined sediment fingerprinting and radioisotope dating approach to explore changes in sediment sources with land-use change in the Brantian Catchment, Borneo.

NASA Astrophysics Data System (ADS)

Walsh, Rory; Higton, Sam; Marshall, Jake; Bidin, Kawi; Blake, William; Nainar, Anand

2015-04-01

This paper reports some methodological issues and early results of a project investigating the erosional impacts of land use changes (multiple selective logging and progressive, partial conversion to oil palm) over the last 25-40 years in the 600km2 Brantian river catchment in Sabah, Borneo. A combined sediment fingerprinting and radioisotope dating approach is being applied to sediment cores taken in stream hierarchical fashion across the intermediate catchment scale. Changes in sediment sources and sedimentation rates over time can be captured by changes in the relative importance of geochemical elements with depth in downstream sediment cores, which in turn can be linked to parallel changes in upstream cores by the application of unmixing models and statistical techniques. Radioisotope analysis of the sediment cores allows these changes to be dated and sedimentation rates to be estimated. Work in the neighbouring Segama catchment had successfully demonstrated the potential of such an approach in a rainforest environment (Walsh et al. 2011). The paper first describes steps taken to address methodological issues. The approach relies on taking continuous sediment cores which have aggraded progressively over time and remain relatively undisturbed and uncontaminated. This issue has been tackled (1) through careful core sampling site selection with a focus on lateral bench sites and (2) deployment of techniques such as repeat-measurement erosion bridge transects to assess the contemporary nature of sedimentation to validate (or reject) candidate sites. The issue of sediment storage and uncertainties over lag times has been minimised by focussing on sets of above- and below-confluence sites in the intermediate zone of the catchment, thus minimising sediment transit times between upstream contributing and downstream destination core sites. This focus on the intermediate zone was also driven by difficulties in finding suitable core sites in the mountainous headwaters area due to the prevalence of steep, incised channels without even narrow floodplains. Preliminary results are reported from (1) a field visit to investigate potential sampling sites in July 2014 and (2) initial analysis of a sediment core at a promising lateral bench site. Marked down-profile geochemistry changes of the core indicate a history of phases of high deposition and lateral growth of the channel caused by mobilisation of sediment linked to logging and clearance upstream. Recent channel bed degradation suggests the system has been adjusting a decline in sediment supply with forest recovery since logging in 2005, but a renewed sedimentation phase heralded by > 10 cm deposition at the site in a flood in July 2014 appears to have started linked to partial forest clearance for oil palm. These preliminary results support the ability of a combined fingerprinting and dating approach to reflect the spatial history of land-use change in a catchment undergoing disturbance. Walsh R. P. D. , Bidin K., Blake W.H., Chappell N.A., Clarke M.A., Douglas I., Ghazali R., Sayer A.M., Suhaimi J., Tych W. & Annammala K.V. (2011) Long-term responses of rainforest erosional systems at different spatial scales to selective logging and climatic change. Philosophical Transactions of the Royal Society B, 366, 3340-3353.

A study of the members of the tribe Phasmatini Gray, 1835, that occur within the boundaries of Wallacea (Phasmatodea: Phasmatidae: Phasmatinae: "Lanceocercata").

PubMed

Hennemann, Frank H; Conle, Oskar V; Suzuki, Sigetake

2015-09-01

The tribe Phasmatini Gray, 1835 predominantly includes very striking stick insects of remarkable size, most of which are characteristic for their large and often colourful wings. The tribe represents roughly half of the Giant Stick Insects of Wallacea, a subregion in Eastern Indonesia comprising thousands of islands that are separated by deep water straits from the continental islands to the west (Sundaland: Borneo, Java and Sumatra) and East (New Guinea). Within Wallacea the Phasmatini are represented by four genera, namely Anchiale Stål, 1875, Eurycnema Audinet-Serville, 1838, Paracyphocrania Redtenbacher, 1908 and Phasma Lichtenstein, 1796. Currently eight distinct species are known to occur in the Wallacea. Two of these are newly described in the present paper , this is Anchiale buruense sp. n. and Paracyphocrania major sp. n.. Keys are provided for the distinction of the Phasmatini taxa of Wallacea and information on the overall distribution of the four genera is presented, which reveals a derivation of the tribe from the Australian region. The tribe Phasmatini itself is briefly characterized and discussed. Brief characterizations of the four genera are provided along with complete lists of the species currently contained. Anchiale Stål, 1875 is represented in the Wallacea by two species. A. maculata (Olivier, 1792) is widely distributed throughout Wallacea except for Sulawesi and shows considerable intraspecific variability. Both sexes and the eggs are illustrated and the eggs formally described for the first time. The synonymies of A. maculata are clarified. A. stolli Sharp, 1898 and A. confusa Sharp, 1898 from New Britain and the Solomon Islands are shown to be errorneous synonyms of A. maculata and are here re-established as valid species (stat. rev.). A. caesarea Redtenbacher, 1908 is removed from the genus Acrophylla Gray, 1835 and transferred to Anchiale (comb. n.). The new species A. buruense sp. n. from the island of Buru (Maluku Islands) is described and illustrated based on both sexes and the egg. Eurycnema Audinet-Serville, 1838 has two species within the boundaries of Wallacea. E. nigrospinosa Redtenbacher, 1908 is only known from the Kei Islands in the southeastern portion of Wallacea and otherwise found on New Guinea. Both sexes and the eggs are illustrated. E. versirubra Audinet-Serville, 1838 is found on some of the Lesser Sunda Islands and otherwise distributed throughout Java, Sumatra and SE-Borneo. The records from Java, Sumatra and southeast Borneo are estimated to be artificial. Females of this species are dimorph and occur in two distinct colour morphs, which differ by the distinct colouration of the undersides of the tegmina and alae. E. versirubra colour morph versirubra has two forms, the insects either being bright green or dull yellow with the ventral surfaces of the tegmina and alae bright red. E. versirubra colour morph versifasciata, has the ventral surfaces of the tegmina and alae yellow, the insects themselves being pale bluish green to turquoise in colour. Only the bright green form appears to be natural with the other colour-forms caused by parthenogenetic reproduction in captivity. Both sexes, the eggs and the two aforementioned colour-morphs are illustrated. Paracyphocrania Redtenbacher, 1908 contains two known species and is endemic to Sulawesi and the nearby island of Peleng. The new species Paracyphocrania major sp. n. from Peleng is described and illustrated based on the female and egg. The male remains as yet unknown. The previously unknown male of P. lativentris Redtenbacher, 1908 is described for the first time. Both sexes and the eggs are illustrated. Vasilissa tecticollis Redtenbacher, 1908 is shown to have been misinterpreted previously, here removed from Paracyphocrania and shown to be a synonym of the Australian Tropidoderus rhodomus McCoy, 1882 (syn. n.). Hence, the type-locality of V. tecticollis originally given as "Philippines" is definitely wrong, which proves the tribe Phasmatini is not represented in the Philippines at all. Phasma Lichtenstein, 1796 is represented in Wallacea with two distinct species and has one further species on New Guinea. A key is provided to distinguish between the three known species of Phasma. Ph. gigas (Linnaeus, 1758) is widely distributed throughout Wallacea and found on almost all major islands, although the historic records from Sulawesi deserve evaluation. Ph. gigas is most certainly not present on New Guinea, with all New Guinean records actually referring to Ph. reinwardtii (de Haan, 1842). Ph. gigas exhibits remarkable intraspecific variability in the colouration and certain morphological features of the insects, with several of these variations appearing to be peculiar to certain localities and islands. The range of variation as well as both sexes and the eggs are illustrated. Papuanoidea straleni Werner, 1930 from New Guinea has erroneously been synonymised with Ph. gigas and is here shown to be a synonym of Ph. reinwardtii (de Haan, 1842) (syn. n.). The second Wallacean representative of the genus, Ph. marosense Hennemann, 1998, is endemic to Sulawesi. The previously unknown male is described for the first time and both sexes and the eggs are illustrated. Holotypes of the two newly described species, Anchiale buruense sp. n. and Paracyphocrania major sp. n., are deposited in the State Zoological Collections Munich, Germany (ZSMC).

Biology of Incidental Catch Sea Star Stellaster childreni Gray, 1840 (Echinodermata: Asteroidea), from Malaysian Borneo Exclusive Economic Zone

PubMed Central

Lee, Suet Yee; Morni, Wan Zabidii Wan

2017-01-01

Sea star (class Asteroidea, phylum Echinodermata) is one of the most successful marine organisms inhabiting a wide range of habitats. As one of the key stone species, sea stars are responsible for maintaining much of the local diversity of species within certain communities. Malaysian Exclusive Economic Zone (EEZ) Resource Survey had been carried out from 16th Aug to 6th Nov 2015 and one of the invertebrate by-catch organisms is sea star Stellaster childreni Gray, 1840. This study documents morphological characters and diet of the sea star, besides providing brief descriptions of the habitats based on particle size analysis and vessel log data sheet. A total of 217 individuals had been examined throughout this study. Fragments of flora and fauna were found in the gut including Mollusca (gastropod, bivalves, and scaphopods), sponge seagrass, and seaweed as well as benthic Foraminifera. Stellaster childreni were found at depth of 45 m to 185 m in the South China Sea off Sarawak Malaysia, with various sea bottom substrata. Approximately 41% of S. childreni were found at a mixture of sandy and muddy substratum, followed by mixture of sandy and coral (19.3%), muddy substratum (17.5%), coral substratum (11.5%), and sandy areas (10.6%). The widely distributed sea star on different types of sea beds suggested healthy deep sea ecosystem; thus Malaysia should explore further potential fisheries resources in the EEZ off Sarawak coast. PMID:28695188

Selective logging in tropical forests decreases the robustness of liana-tree interaction networks to the loss of host tree species.

PubMed

Magrach, Ainhoa; Senior, Rebecca A; Rogers, Andrew; Nurdin, Deddy; Benedick, Suzan; Laurance, William F; Santamaria, Luis; Edwards, David P

2016-03-16

Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the 'health' and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana-tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of 'extinction debt'. © 2016 The Author(s).

The impact of tropical forest logging and oil palm agriculture on the soil microbiome.

PubMed

Tripathi, Binu M; Edwards, David P; Mendes, Lucas William; Kim, Mincheol; Dong, Ke; Kim, Hyoki; Adams, Jonathan M

2016-05-01

Selective logging and forest conversion to oil palm agriculture are rapidly altering tropical forests. However, functional responses of the soil microbiome to these land-use changes are poorly understood. Using 16S rRNA gene and shotgun metagenomic sequencing, we compared composition and functional attributes of soil biota between unlogged, once-logged and twice-logged rainforest, and areas converted to oil palm plantations in Sabah, Borneo. Although there was no significant effect of logging history, we found a significant difference between the taxonomic and functional composition of both primary and logged forests and oil palm. Oil palm had greater abundances of genes associated with DNA, RNA, protein metabolism and other core metabolic functions, but conversely, lower abundance of genes associated with secondary metabolism and cell-cell interactions, indicating less importance of antagonism or mutualism in the more oligotrophic oil palm environment. Overall, these results show a striking difference in taxonomic composition and functional gene diversity of soil microorganisms between oil palm and forest, but no significant difference between primary forest and forest areas with differing logging history. This reinforces the view that logged forest retains most features and functions of the original soil community. However, networks based on strong correlations between taxonomy and functions showed that network complexity is unexpectedly increased due to both logging and oil palm agriculture, which suggests a pervasive effect of both land-use changes on the interaction of soil microbes. © 2016 John Wiley & Sons Ltd.

First South American Agathis (Araucariaceae), Eocene of Patagonia.

PubMed

Wilf, Peter; Escapa, Ignacio H; Cúneo, N Rubén; Kooyman, Robert M; Johnson, Kirk R; Iglesias, Ari

2014-01-01

Agathis is an iconic genus of large, ecologically important, and economically valuable conifers that range over lowland to upper montane rainforests from New Zealand to Sumatra. Exploitation of its timber and copal has greatly reduced the genus's numbers. The early fossil record of Agathis comes entirely from Australia, often presumed to be its area of origin. Agathis has no previous record from South America. We describe abundant macrofossils of Agathis vegetative and reproductive organs, from early and middle Eocene rainforest paleofloras of Patagonia, Argentina. The leaves were formerly assigned to the New World cycad genus Zamia. Agathis zamunerae sp. nov. is the first South American occurrence and the most complete representation of Agathis in the fossil record. Its morphological features are fully consistent with the living genus. The most similar living species is A. lenticula, endemic to lower montane rainforests of northern Borneo. Agathis zamunerae sp. nov. demonstrates the presence of modern-aspect Agathis by 52.2 mya and vastly increases the early range and possible areas of origin of the genus. The revision from Zamia breaks another link between the Eocene and living floras of South America. Agathis was a dominant, keystone element of the Patagonian Eocene floras, alongside numerous other plant taxa that still associate with it in Australasia and Southeast Asia. Agathis extinction in South America was an integral part of the transformation of Patagonian biomes over millions of years, but the living species are disappearing from their ranges at a far greater rate.

Low temperature magnetic behaviour near 35 K in unmetamorphosed claystones

NASA Astrophysics Data System (ADS)

Kars, Myriam; Aubourg, Charles; Pozzi, Jean-Pierre

2011-09-01

There is growing evidence that the magnetic assemblage of claystones, illustrated by low-temperature magnetic transitions at ˜120 K and ˜35 K, may be representative of the peak burial temperature in the so-called oil-window (60-150°C). In previous studies, it was proposed that this magnetic assemblage is characterized by fine-grained pyrrhotite (Fe7S8) and magnetite (Fe3O4). However, evidence of pyrrhotite was not so obvious and the magnetic transition near 35 K of fine-grained pyrrhotite has similarities with those of siderite (FeCO3) or rhodochrosite (MnCO3). Here, we propose some diagnostic tests to distinct <50 K behaviours by studying claystones from Netherlands borehole and Borneo Prism that experienced different peak burial temperatures. We perform magnetic susceptibility, temperature dependency of SIRM (ZFC, RT-SIRM) and field cooled hysteresis loops. On cooling of RT-SIRM (300 K to 10 K), we applied a magnetic field of 5 μT to enhance Néel type magnetic transition. It is found that our samples can be classified in two categories based on the shape of the RT-SIRM curve: one displaying an abrupt break-in-slope in the remanence at ˜30 K, called N-behaviour, and the other one characterized by a progressive increase of the remanent magnetization by 80 K, named P-behaviour. The first category contains essentially magnetite and Fe-Mn carbonates, the second one magnetite and probably iron sulphides.

Global forest loss disproportionately erodes biodiversity in intact landscapes.

PubMed

Betts, Matthew G; Wolf, Christopher; Ripple, William J; Phalan, Ben; Millers, Kimberley A; Duarte, Adam; Butchart, Stuart H M; Levi, Taal

2017-07-27

Global biodiversity loss is a critical environmental crisis, yet the lack of spatial data on biodiversity threats has hindered conservation strategies. Theory predicts that abrupt biodiversity declines are most likely to occur when habitat availability is reduced to very low levels in the landscape (10-30%). Alternatively, recent evidence indicates that biodiversity is best conserved by minimizing human intrusion into intact and relatively unfragmented landscapes. Here we use recently available forest loss data to test deforestation effects on International Union for Conservation of Nature Red List categories of extinction risk for 19,432 vertebrate species worldwide. As expected, deforestation substantially increased the odds of a species being listed as threatened, undergoing recent upgrading to a higher threat category and exhibiting declining populations. More importantly, we show that these risks were disproportionately high in relatively intact landscapes; even minimal deforestation has had severe consequences for vertebrate biodiversity. We found little support for the alternative hypothesis that forest loss is most detrimental in already fragmented landscapes. Spatial analysis revealed high-risk hot spots in Borneo, the central Amazon and the Congo Basin. In these regions, our model predicts that 121-219 species will become threatened under current rates of forest loss over the next 30 years. Given that only 17.9% of these high-risk areas are formally protected and only 8.9% have strict protection, new large-scale conservation efforts to protect intact forests are necessary to slow deforestation rates and to avert a new wave of global extinctions.

New evidence for a 67,000-year-old human presence at Callao Cave, Luzon, Philippines.

PubMed

Mijares, Armand Salvador; Détroit, Florent; Piper, Philip; Grün, Rainer; Bellwood, Peter; Aubert, Maxime; Champion, Guillaume; Cuevas, Nida; De Leon, Alexandra; Dizon, Eusebio

2010-07-01

Documentation of early human migrations through Island Southeast Asia and Wallacea en route to Australia has always been problematic due to a lack of well-dated human skeletal remains. The best known modern humans are from Niah Cave in Borneo (40-42ka), and from Tabon Cave on the island of Palawan, southwest Philippines (47+/-11ka). The discovery of Homo floresiensis on the island of Flores in eastern Indonesia has also highlighted the possibilities of identifying new hominin species on islands in the region. Here, we report the discovery of a human third metatarsal from Callao Cave in northern Luzon. Direct dating of the specimen using U-series ablation has provided a minimum age estimate of 66.7+/-1ka, making it the oldest known human fossil in the Philippines. Its morphological features, as well as size and shape characteristics, indicate that the Callao metatarsal definitely belongs to the genus Homo. Morphometric analysis of the Callao metatarsal indicates that it has a gracile structure, close to that observed in other small-bodied Homo sapiens. Interestingly, the Callao metatarsal also falls within the morphological and size ranges of Homo habilis and H. floresiensis. Identifying whether the metatarsal represents the earliest record of H. sapiens so far recorded anywhere east of Wallace's Line requires further archaeological research, but its presence on the isolated island of Luzon over 65,000 years ago further demonstrates the abilities of humans to make open ocean crossings in the Late Pleistocene.

Thinned crustal structure and tectonic boundary of the Nansha Block, southern South China Sea

NASA Astrophysics Data System (ADS)

Dong, Miao; Wu, Shi-Guo; Zhang, Jian

2016-12-01

The southern South China Sea margin consists of the thinned crustal Nansha Block and a compressional collision zone. The Nansha Block's deep structure and tectonic evolution contains critical information about the South China Sea's rifting. Multiple geophysical data sets, including regional magnetic, gravity and reflection seismic data, reveal the deep structure and rifting processes. Curie point depth (CPD), estimated from magnetic anomalies using a windowed wavenumber-domain algorithm, enables us to image thermal structures. To derive a 3D Moho topography and crustal thickness model, we apply Oldenburg algorithm to the gravity anomaly, which was extracted from the observed free air gravity anomaly data after removing the gravity effect of density variations of sediments, and temperature and pressure variations of the lithospheric mantle. We found that the Moho depth (20 km) is shallower than the CPD (24 km) in the Northwest Borneo Trough, possibly caused by thinned crust, low heat flow and a low vertical geothermal gradient. The Nansha Block's northern boundary is a narrow continent-ocean transition zone constrained by magnetic anomalies, reflection seismic data, gravity anomalies and an interpretation of Moho depth (about 13 km). The block extends southward beneath a gravity-driven deformed sediment wedge caused by uplift on land after a collision, with a contribution from deep crustal flow. Its southwestern boundary is close to the Lupar Line defined by a significant negative reduction to the pole (RTP) of magnetic anomaly and short-length-scale variation in crustal thickness, increasing from 18 to 26 km.

A cybertaxonomic revision of the micro-landsnail genus Plectostoma Adam (Mollusca, Caenogastropoda, Diplommatinidae), from Peninsular Malaysia, Sumatra and Indochina

PubMed Central

Liew, Thor-Seng; Vermeulen, Jaap Jan; Marzuki, Mohammad Effendi bin; Schilthuizen, Menno

2014-01-01

Abstract Plectostoma is a micro land snail restricted to limestone outcrops in Southeast Asia. Plectostoma was previously classified as a subgenus of Opisthostoma because of the deviation from regular coiling in many species in both taxa. This paper is the first of a two-part revision of the genus Plectostoma, and includes all non-Borneo species. In the present paper, we examined 214 collection samples of 31 species, and obtained 62 references, 290 pictures, and 155 3D-models of 29 Plectostoma species and 51 COI sequences of 19 species. To work with such a variety of taxonomic data, and then to represent it in an integrated, scaleable and accessible manner, we adopted up-to-date cybertaxonomic tools. All the taxonomic information, such as references, classification, species descriptions, specimen images, genetic data, and distribution data, were tagged and linked with cyber tools and web servers (e.g. Lifedesks, Google Earth, and Barcoding of Life Database). We elevated Plectostoma from subgenus to genus level based on morphological, ecological and genetic evidence. We revised the existing 21 Plectostoma species and described 10 new species, namely, P. dindingensis sp. n., P. mengaburensis sp. n., P. whitteni sp. n., P. kayiani sp. n., P. davisoni sp. n., P. relauensis sp. n., P. kubuensis sp. n., P. tohchinyawi sp. n., P. tenggekensis sp. n., and P. ikanensis sp. n. All the synthesised, semantic-tagged, and linked taxonomic information is made freely and publicly available online. PMID:24715783

Simulation of heavy precipitation episode over eastern Peninsular Malaysia using MM5: sensitivity to cumulus parameterization schemes

NASA Astrophysics Data System (ADS)

Salimun, Ester; Tangang, Fredolin; Juneng, Liew

2010-06-01

A comparative study has been conducted to investigate the skill of four convection parameterization schemes, namely the Anthes-Kuo (AK), the Betts-Miller (BM), the Kain-Fritsch (KF), and the Grell (GR) schemes in the numerical simulation of an extreme precipitation episode over eastern Peninsular Malaysia using the Pennsylvania State University—National Center for Atmospheric Research Center (PSU-NCAR) Fifth Generation Mesoscale Model (MM5). The event is a commonly occurring westward propagating tropical depression weather system during a boreal winter resulting from an interaction between a cold surge and the quasi-stationary Borneo vortex. The model setup and other physical parameterizations are identical in all experiments and hence any difference in the simulation performance could be associated with the cumulus parameterization scheme used. From the predicted rainfall and structure of the storm, it is clear that the BM scheme has an edge over the other schemes. The rainfall intensity and spatial distribution were reasonably well simulated compared to observations. The BM scheme was also better in resolving the horizontal and vertical structures of the storm. Most of the rainfall simulated by the BM simulation was of the convective type. The failure of other schemes (AK, GR and KF) in simulating the event may be attributed to the trigger function, closure assumption, and precipitation scheme. On the other hand, the appropriateness of the BM scheme for this episode may not be generalized for other episodes or convective environments.

Oil palm plantations fail to support mammal diversity.

PubMed

Yue, Sam; Brodie, Jedediah F; Zipkin, Elise F; Bernard, Henry

2015-12-01

Agricultural expansion is the largest threat to global biodiversity. In particular, the rapid spread of tree plantations is a primary driver of deforestation in hyperdiverse tropical regions. Plantations tend to support considerably lower biodiversity than native forest, but it remains unclear whether plantation traits affect their ability to sustain native wildlife populations, particularly for threatened taxa. If animal diversity varies across plantations with different characteristics, these traits could be manipulated to make plantations more "wildlife friendly." The degree to which plantations create edge effects that degrade habitat quality in adjacent forest also remains unclear, limiting our ability to predict wildlife persistence in mixed-use landscapes. We used systematic camera trapping to investigate mammal occurrence and diversity in oil palm plantations and adjacent forest in Sabah, Malaysian Borneo. Mammals within plantations were largely constrained to locations near native forest; the occurrence of most species and overall species richness declined abruptly with decreasing forest proximity from an estimated 14 species at the forest ecotone to -1 species 2 km into the plantation. Neither tree height nor canopy cover within plantations strongly affected mammal diversity or occurrence, suggesting that manipulating tree spacing or planting cycles might not make plantations more wildlife friendly. Plantations did not appear to generate strong edge effects; mammal richness within forest remained high and consistent up to the plantation ecotone. Our results suggest that land-sparing strategies, as opposed to efforts to make plantations more wildlife-friendly, are required for regional wildlife conservation in biodiverse tropical ecosystems.

Selective logging in tropical forests decreases the robustness of liana–tree interaction networks to the loss of host tree species

PubMed Central

Magrach, Ainhoa; Senior, Rebecca A.; Rogers, Andrew; Nurdin, Deddy; Benedick, Suzan; Laurance, William F.; Santamaria, Luis; Edwards, David P.

2016-01-01

Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the ‘health’ and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana–tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of ‘extinction debt’. PMID:26936241

Alteration mineral mapping using ETM+ and hyperion remote sensing data at Bau Gold Field, Sarawak, Malaysia

NASA Astrophysics Data System (ADS)

Pour, A. B.; Hashim, M.

2014-02-01

The area under investigation is the Bau gold mining district in the State of Sarawak, East Malaysia, on the island of Borneo. It has tropical climate with limited bedrock exposures. Bau is a gold field similar to Carlin style gold deposits. Geological analyses coupled with remote sensing data were used to detect hydrothermally altered rocks associated with gold mineralization. The Landsat Enhanced Thematic Mapper+ (ETM+) and Hyperion data were used to carry out mineral mapping of mineralized zones in the study area and surrounding terrain. Directed Principal Components Analysis (DPCA) transformation of four appropriate ETM+ band ratios were applied to produce DPC images, allowing the removal of the effects of vegetation from ETM+ data and the detection of separate mineral images at a regional scale. Linear Spectral Unmixing (LSU) was used to produce image maps of hydroxyl-bearing minerals using Hyperion data at a district scale. Results derived from the visible and near infrared and shortwave infrared bands of Hyperion represented iron oxide/hydroxide and clay minerals rich zones associated with the known gold prospects in the Bau district. The results show that the known gold prospects and potentially interesting areas are recognizable by the methods used, despite limited bedrock exposure in this region and the constraints imposed by the tropical environment. The approach used in this study can be more broadly applicable to provide an opportunity for detecting potentially interesting areas of gold mineralization using the ETM+ and Hyperion data in the tropical/sub-tropical regions.

Origin and diversity of an underutilized fruit tree crop, cempedak (Artocarpus integer, Moraceae).

PubMed

Wang, Maria M H; Gardner, Elliot M; Chung, Richard C K; Chew, Ming Yee; Milan, Abd Rahman; Pereira, Joan T; Zerega, Nyree J C

2018-06-06

Underutilized crops and their wild relatives are important resources for crop improvement and food security. Cempedak [Artocarpus integer (Thunb). Merr.] is a significant crop in Malaysia but underutilized elsewhere. Here we performed molecular characterization of cempedak and its putative wild relative bangkong (Artocarpus integer (Thunb). Merr. var. silvestris Corner) to address questions regarding the origin and diversity of cempedak. Using data from 12 microsatellite loci, we assessed the genetic diversity and genetic/geographic structure for 353 cempedak and 175 bangkong accessions from Malaysia and neighboring countries and employed clonal analysis to characterize cempedak cultivars. We conducted haplotype network analyses on the trnH-psbA region in a subset of these samples. We also analyzed key vegetative characters that reportedly differentiate cempedak and bangkong. We show that cempedak and bangkong are sister taxa and distinct genetically and morphologically, but the directionality of domestication origin is unclear. Genetic diversity was generally higher in bangkong than in cempedak. We found a distinct genetic cluster for cempedak from Borneo as compared to cempedak from Peninsular Malaysia. Finally, cempedak cultivars with the same names did not always share the same genetic fingerprint. Cempedak origins are complex, with likely admixture and hybridization with bangkong, warranting further investigation. We provide a baseline of genetic diversity of cempedak and bangkong in Malaysia and found that germplasm collections in Malaysia represent diverse coverage of the four cempedak genetic clusters detected. © 2018 Botanical Society of America.

Structure, stratigraphy and petroleum geology of the south east Nam Con Son Basin, offshore Vietnam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fraser, A.J.; Matthews, S.J.; Lowe, S.

1996-12-31

Recent exploration of the south east Nam Con Son Basin, offshore Vietnam, by BP in alliance with Statoil has involved acquisition of new seismic and well data. These new data have allowed re-evaluation of the tectono-stratigraphic development and petroleum geology, and have provided additional constraints on the regional tectonic evolution. The offshore Vietnamese basins have evolved in response to the complex relative motions of Indochina, Peninsular Malaysia, Borneo and the South China Sea during the Cenozoic. On the regional scale these motions have been accommodated by strike-slip fault development, rifting and contraction. In the Nam Con Son Basin these motionsmore » have interacted in different ways from the Palaeogene to recent. Two rifting episodes are recognized; a Palaeogene phase dominated by E-W trending extensional faults, and a Miocene phase dominated by N-S to NE-SW trending faults. The structural evolution is complicated by a pulse of mild contraction during the Middle Miocene. The sedimentary fill of the basin evolves from continental fluvio-lacustrine in the Palaeogene through to fully marine following the second phase of rifting in the Miocene. This pulsed structural and stratigraphic evolution has resulted in basinwide deposition of source, reservoir and seal facies, and produced a variety of potential trapping styles. This paper describes the hydrocarbon habitat of the south east Nam Con Son Basin within the context of the regional tectono-stratigraphic model.« less

Structure, stratigraphy and petroleum geology of the south east Nam Con Son Basin, offshore Vietnam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fraser, A.J.; Matthews, S.J.; Lowe, S.

1996-01-01

Recent exploration of the south east Nam Con Son Basin, offshore Vietnam, by BP in alliance with Statoil has involved acquisition of new seismic and well data. These new data have allowed re-evaluation of the tectono-stratigraphic development and petroleum geology, and have provided additional constraints on the regional tectonic evolution. The offshore Vietnamese basins have evolved in response to the complex relative motions of Indochina, Peninsular Malaysia, Borneo and the South China Sea during the Cenozoic. On the regional scale these motions have been accommodated by strike-slip fault development, rifting and contraction. In the Nam Con Son Basin these motionsmore » have interacted in different ways from the Palaeogene to recent. Two rifting episodes are recognized; a Palaeogene phase dominated by E-W trending extensional faults, and a Miocene phase dominated by N-S to NE-SW trending faults. The structural evolution is complicated by a pulse of mild contraction during the Middle Miocene. The sedimentary fill of the basin evolves from continental fluvio-lacustrine in the Palaeogene through to fully marine following the second phase of rifting in the Miocene. This pulsed structural and stratigraphic evolution has resulted in basinwide deposition of source, reservoir and seal facies, and produced a variety of potential trapping styles. This paper describes the hydrocarbon habitat of the south east Nam Con Son Basin within the context of the regional tectono-stratigraphic model.« less

Development and behavior of wild infant-juvenile East Bornean orangutans (Pongo pygmaeus morio) in Danum Valley.

PubMed

Mendonça, Renata S; Kanamori, Tomoko; Kuze, Noko; Hayashi, Misato; Bernard, Henry; Matsuzawa, Tetsuro

2017-01-01

Orangutans have a long period of immaturity and the longest inter-birth interval (IBI) of all mammals, which can be explained by their solitary life style, preventing the mother from rearing two offspring simultaneously (solitary life hypothesis) [corrected]. We collected data on mother-offspring dyads living in a primary lowland forest in Danum Valley, East Borneo in an effort to examine the developmental and behavioral patterns of the subspecies Pongo pygmaeus morio. We analyzed developmental changes in mother-offspring distance, contact, and activity budgets in orangutans ranging from 1 to 7 years of age. The results indicated decreased resting and playing with increasing age, whereas feeding, traveling and social play all increased significantly. Mothers' feeding and traveling time were good predictors of their offspring's feeding and traveling activities. Mother-offspring contact lasted longer in resting contexts; contact during traveling was almost non-existent after 4 years of age. Comparisons with previously published data on the Sumatran species Pongo abelli revealed no fundamental differences in these behavioral measures. However, a shorter association time with the mother after behavioral independence is documented for this East Bornean population in comparison to Sumatran populations. These results are best explained by the solitary life hypothesis, in agreement with previous studies. We suggest that environmental constraints in Bornean forests, as well as a lower population density, should be considered when interpreting the differences between Sumatran and Bornean orangutans in both the period of association with mother and the IBI.

Biology of Incidental Catch Sea Star Stellaster childreni Gray, 1840 (Echinodermata: Asteroidea), from Malaysian Borneo Exclusive Economic Zone.

PubMed

Hassan, Ruhana; Lee, Suet Yee; Morni, Wan Zabidii Wan

2017-01-01

Sea star (class Asteroidea, phylum Echinodermata) is one of the most successful marine organisms inhabiting a wide range of habitats. As one of the key stone species, sea stars are responsible for maintaining much of the local diversity of species within certain communities. Malaysian Exclusive Economic Zone (EEZ) Resource Survey had been carried out from 16th Aug to 6th Nov 2015 and one of the invertebrate by-catch organisms is sea star Stellaster childreni Gray, 1840. This study documents morphological characters and diet of the sea star, besides providing brief descriptions of the habitats based on particle size analysis and vessel log data sheet. A total of 217 individuals had been examined throughout this study. Fragments of flora and fauna were found in the gut including Mollusca (gastropod, bivalves, and scaphopods), sponge seagrass, and seaweed as well as benthic Foraminifera. Stellaster childreni were found at depth of 45 m to 185 m in the South China Sea off Sarawak Malaysia, with various sea bottom substrata. Approximately 41% of S. childreni were found at a mixture of sandy and muddy substratum, followed by mixture of sandy and coral (19.3%), muddy substratum (17.5%), coral substratum (11.5%), and sandy areas (10.6%). The widely distributed sea star on different types of sea beds suggested healthy deep sea ecosystem; thus Malaysia should explore further potential fisheries resources in the EEZ off Sarawak coast.

Smoke aerosol transport patterns over the Maritime Continent

NASA Astrophysics Data System (ADS)

Xian, Peng; Reid, Jeffrey S.; Atwood, Samuel A.; Johnson, Randall S.; Hyer, Edward J.; Westphal, Douglas L.; Sessions, Walter

2013-03-01

Smoke transport patterns over the Maritime Continent (MC) are studied through a combination of approaches, including a) analyzing AODs obtained from satellite products; b) aerosol transport modeling with AOD assimilation along with the atmospheric flow patterns; c) analyzing smoke wet deposition distributions; and d) examining forward trajectories for smoke events defined in this study. It is shown that smoke transport pathways are closely related to the low-level atmospheric flow, i.e., during June-Sept, smoke originating from the MC islands with a dominant source over central and southern Sumatra, and southern and western Borneo, is generally transported northwestward south of the equator and northeastward north of the equator with the cross-equatorial flow, to the South China Sea (SCS), the Philippines and even further to the western Pacific. During the October-November transitional period, smoke transport paths are more zonally oriented compared to June-September. Smoke originating from Java, Bali, Timor etc, and southern New Guinea, which are in the domain of easterlies and southeasterlies during the boreal summer (June-November), is generally transported westward. It is also found that smoke transport over the MC exhibits multi-scale variability. Smoke typically lives longer and can be transported farther in El Niño years and later MJO phases compared with non El Niño years and earlier MJO phases. During El Niño periods there is much stronger westward transport to the east tropical Indian Ocean. Finally, orographic effect on smoke transport over the MC is also clearly discernable.

Predicting the Occurrence of Haze Events in Southeast Asia using Machine Learning Algorithms

NASA Astrophysics Data System (ADS)

Lee, H. H.; Chulakadabba, A.; Tonks, A.; Yang, Z.; Wang, C.

2017-12-01

Severe local- and regional-scale air pollution episodes typically originate from 1) high emissions of air pollutants, 2) poor dispersion conditions, and 3) trans-boundary pollutant transport. Biomass burning activities have become more frequent in Southeast Asia, especially in Sumatra, Borneo, and the mainland Southeast. Trans-boundary transport of biomass burning aerosols often lead to air quality problems in the region. Furthermore, particulate pollutants from human activities besides biomass burning also play an important role in the air quality of Southeast Asia. Singapore, for example, has a dynamic industrial sector including chemical, electric and metallurgic industries, and is the region's major petroleum-refining center. In addition, natural gas and oil power plants, waste incinerators, active port traffic, and a major regional airport further complicate Singapore's air quality issues. In this study, we compare five Machine Learning algorithms: k-Nearest Neighbors, Linear Support Vector Machine, Decision Tree, Random Forest and Artificial Neural Network, to identify haze patterns and determine variable importance. The algorithms were trained using local atmospheric data (i.e. months, atmospheric conditions, wind direction and relative humidity) from three observation stations in Singapore (Changi, Seletar and Paya Labar). We find that the algorithms reveal the associations in data within and between the stations, and provide in-depth interpretation of the haze sources. The algorithms also allow us to predict the probability of haze episodes in Singapore and to determine the correlation between this probability and atmospheric conditions.

Niche convergence suggests functionality of the nocturnal fovea.

PubMed

Moritz, Gillian L; Melin, Amanda D; Tuh Yit Yu, Fred; Bernard, Henry; Ong, Perry S; Dominy, Nathaniel J

2014-01-01

The fovea is a declivity of the retinal surface associated with maximum visual acuity. Foveae are widespread across vertebrates, but among mammals they are restricted to haplorhine primates (tarsiers, monkeys, apes, and humans), which are primarily diurnal. Thus primates have long contributed to the view that foveae are functional adaptations to diurnality. The foveae of tarsiers, which are nocturnal, are widely interpreted as vestigial traits and therefore evidence of a diurnal ancestry. This enduring premise is central to adaptive hypotheses on the origins of anthropoid primates; however, the question of whether tarsier foveae are functionless anachronisms or nocturnal adaptations remains open. To explore this question, we compared the diets of tarsiers (Tarsius) and scops owls (Otus), taxa united by numerous anatomical homoplasies, including foveate vision. A functional interpretation of these homoplasies predicts dietary convergence. We tested this prediction by analyzing stable isotope ratios that integrate dietary information. In Borneo and the Philippines, the stable carbon isotope compositions of Tarsius and Otus were indistinguishable, whereas the stable nitrogen isotope composition of Otus was marginally higher than that of Tarsius. Our results indicate that species in both genera consumed mainly ground-dwelling prey. Taken together, our findings support a functional interpretation of the many homoplasies shared by tarsiers and scops owls, including a retinal fovea. We suggest that the fovea might function similarly in tarsiers and scops owls by calibrating the auditory localization pathway. The integration of auditory localization and visual fixation during prey detection and acquisition might be critical at low light levels.

Rates and drivers of mangrove deforestation in Southeast Asia, 2000-2012.

PubMed

Richards, Daniel R; Friess, Daniel A

2016-01-12

The mangrove forests of Southeast Asia are highly biodiverse and provide multiple ecosystem services upon which millions of people depend. Mangroves enhance fisheries and coastal protection, and store among the highest densities of carbon of any ecosystem globally. Mangrove forests have experienced extensive deforestation owing to global demand for commodities, and previous studies have identified the expansion of aquaculture as largely responsible. The proportional conversion of mangroves to different land use types has not been systematically quantified across Southeast Asia, however, particularly in recent years. In this study we apply a combined geographic information system and remote sensing method to quantify the key proximate drivers (i.e., replacement land uses) of mangrove deforestation in Southeast Asia between 2000 and 2012. Mangrove forests were lost at an average rate of 0.18% per year, which is lower than previously published estimates. In total, more than 100,000 ha of mangroves were removed during the study period, with aquaculture accounting for 30% of this total forest change. The rapid expansion of rice agriculture in Myanmar, and the sustained conversion of mangroves to oil palm plantations in Malaysia and Indonesia, are identified as additional increasing and under-recognized threats to mangrove ecosystems. Our study highlights frontiers of mangrove deforestation in the border states of Myanmar, on Borneo, and in Indonesian Papua. To implement policies that conserve mangrove forests across Southeast Asia, it is essential to consider the national and subnational variation in the land uses that follow deforestation.

Phylogeny and host-plant relationships of the Australian Myrtaceae leafmining moth genus Pectinivalva (Lepidoptera, Nepticulidae), with new subgenera and species

PubMed Central

Hoare, Robert J.B.; van Nieukerken, Erik J.

2013-01-01

Abstract The phylogeny of the mainly Australian nepticulid genus Pectinivalva Scoble, 1983 is investigated on the basis of morphology, and a division into three monophyletic subgenera is proposed on the basis of these results. These subgenera (Pectinivalva, Casanovula Hoare, subgen. n. and Menurella Hoare, subgen. n. ) are described and diagnosed, the described species of Pectinivalva are assigned to them, and representative new species are described in each: Pectinivalva (Pectinivalva) mystaconota Hoare, sp. n., Pectinivalva (Casanovula) brevipalpa Hoare, sp. n., Pectinivalva (Casanovula) minotaurus Hoare, sp. n., Pectinivalva (Menurella) scotodes Hoare, sp. n., Pectinivalva (Menurella) acmenae Hoare, sp. n., Pectinivalva (Menurella) xenadelpha Van Nieukerken & Hoare, sp. n., Pectinivalva (Menurella) quintiniae Hoare & Van Nieukerken, sp. n., and Pectinivalva (Menurella) tribulatrix Van Nieukerken & Hoare, sp. n. Pectinivalva (Menurella) quintiniae (from Quintinia verdonii, Paracryphiaceae) is the first known member of the genus with a host-plant not belonging to Myrtaceae. Pectinivalva (Menurella) xenadelpha from Mt Gunung Lumut, Kalimantan, Borneo, is the first pectinivalvine reported from outside Australia. Keys to the subgenera of Nepticulidae known from Australia, based on adults, male and female genitalia, and larvae, are presented. Host-plant relationships of Pectinivalva are discussed with relation to the phylogeny, and a list of known host-plants of Pectinivalva, including hosts of undescribed species, is presented. DNA barcodes are provided for most of the new and several unnamed species. PMID:23794827

Chemical Contamination of Green Turtle (Chelonia mydas) Eggs in Peninsular Malaysia: Implications for Conservation and Public Health

PubMed Central

van de Merwe, Jason P.; Hodge, Mary; Olszowy, Henry A.; Whittier, Joan M.; Ibrahim, Kamarruddin; Lee, Shing Y.

2009-01-01

Background Persistent organic pollutants (POPs)—such as organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs), and polybrominated diphenyl ethers (PBDEs)—and heavy metals have been reported in sea turtles at various stages of their life cycle. These chemicals can disrupt development and function of wildlife. Furthermore, in areas such as Peninsular Malaysia, where the human consumption of sea turtle eggs is prevalent, egg contamination may also have public health implications. Objective In the present study we investigated conservation and human health risks associated with the chemical contamination of green turtle (Chelonia mydas) eggs in Peninsular Malaysia. Methods Fifty-five C. mydas eggs were collected from markets in Peninsular Malaysia and analyzed for POPs and heavy metals. We conducted screening risk assessments (SRAs) and calculated the percent of acceptable daily intake (ADI) for POPs and metals to assess conservation and human health risks associated with egg contamination. Results C. mydas eggs were available in 9 of the 33 markets visited. These eggs came from seven nesting areas from as far away as Borneo Malaysia. SRAs indicated a significant risk to embryonic development associated with the observed arsenic concentrations. Furthermore, the concentrations of coplanar PCBs represented 3 300 times the ADI values set by the World Health Organization. Conclusions The concentrations of POPs and heavy metals reported in C. mydas eggs from markets in Peninsular Malaysia pose considerable risks to sea turtle conservation and human health. PMID:19750104

Diversity of killer cell immunoglobulin-like receptor genes in Indonesian populations of Java, Kalimantan, Timor and Irian Jaya.

PubMed

Velickovic, M; Velickovic, Z; Panigoro, R; Dunckley, H

2009-01-01

Killer cell immunoglobulin-like receptors (KIRs) regulate the activity of natural killer and T cells through interactions with specific human leucocyte antigen class I molecules on target cells. Population studies performed over the last several years have established that KIR gene frequencies (GFs) and genotype content vary considerably among different ethnic groups, indicating the extent of KIR diversity, some of which have also shown the effect of the presence or absence of specific KIR genes in human disease. We have determined the frequencies of 16 KIR genes and pseudogenes and genotypes in 193 Indonesian individuals from Java, East Timor, Irian Jaya (western half of the island of New Guinea) and Kalimantan provinces of Indonesian Borneo. All 16 KIR genes were observed in all four populations. Variation in GFs between populations was observed, except for KIR2DL4, KIR3DL2, KIR3DL3, KIR2DP1 and KIR3DP1 genes, which were present in every individual tested. When comparing KIR GFs between populations, both principal component analysis and a phylogenetic tree showed close clustering of the Kalimantan and Javanese populations, while Irianese populations were clearly separated from the other three populations. Our results indicate a high level of KIR polymorphism in Indonesian populations that probably reflects the large geographical spread of the Indonesian archipelago and the complex evolutionary history and population migration in this region.

Two years' investigation of epidemic hepatitis E virus transmission in West Kalimantan (Borneo), Indonesia.

PubMed

Corwin, A; Jarot, K; Lubis, I; Nasution, K; Suparmawo, S; Sumardiati, A; Widodo, S; Nazir, S; Orndorff, G; Choi, Y

1995-01-01

Two years' follow-up investigation of a hepatitis E virus (HEV) outbreak in West Kalimantan, Indonesia in 1991 was carried out to investigate the epidemiology of epidemic HEV transmission and the persistence of the immunoglobulin G (IgG) antibody response. Sixty cases identified as anti-HEV IgG positive during the outbreak in 1991 were matched with 67 controls and examined, together with 318 members of their families. Overall, the prevalence of anti-HEV IgG among the 445 subjects (representing 127 households) was 59%. There was no significant difference in anti-HEV prevalence between cases (72%) and controls (61%). Loss of detectable anti-HEV IgG after 2 years was demonstrated in 17 of 60 subjects (28%) who were originally positive for anti-HEV in 1991. The mean number of anti-HEV positive subjects per household was 2.04. Cross-sectional prevalence of anti-HEV IgG increased significantly with age (P = 0.01). When communities were grouped into areas of low (< 40%), medium (40-59%) and high (> or = 60%) anti-HEV prevalence, use of river water for drinking and cooking (P < 0.001), personal washing (P < 0.0001), and human excreta disposal (P < 0.001) were associated with high prevalence communities. Conversely, boiling drinking water was negatively associated with increased prevalence (P = 0.02). Subnormal rainfall during the month (August) leading up to the 1991 outbreak (19 cm compared to the monthly mean of 209 cm in 1985-1993) may have contributed to favourable epidemic conditions.

Niche convergence suggests functionality of the nocturnal fovea

PubMed Central

Moritz, Gillian L.; Melin, Amanda D.; Tuh Yit Yu, Fred; Bernard, Henry; Ong, Perry S.; Dominy, Nathaniel J.

2014-01-01

The fovea is a declivity of the retinal surface associated with maximum visual acuity. Foveae are widespread across vertebrates, but among mammals they are restricted to haplorhine primates (tarsiers, monkeys, apes, and humans), which are primarily diurnal. Thus primates have long contributed to the view that foveae are functional adaptations to diurnality. The foveae of tarsiers, which are nocturnal, are widely interpreted as vestigial traits and therefore evidence of a diurnal ancestry. This enduring premise is central to adaptive hypotheses on the origins of anthropoid primates; however, the question of whether tarsier foveae are functionless anachronisms or nocturnal adaptations remains open. To explore this question, we compared the diets of tarsiers (Tarsius) and scops owls (Otus), taxa united by numerous anatomical homoplasies, including foveate vision. A functional interpretation of these homoplasies predicts dietary convergence. We tested this prediction by analyzing stable isotope ratios that integrate dietary information. In Borneo and the Philippines, the stable carbon isotope compositions of Tarsius and Otus were indistinguishable, whereas the stable nitrogen isotope composition of Otus was marginally higher than that of Tarsius. Our results indicate that species in both genera consumed mainly ground-dwelling prey. Taken together, our findings support a functional interpretation of the many homoplasies shared by tarsiers and scops owls, including a retinal fovea. We suggest that the fovea might function similarly in tarsiers and scops owls by calibrating the auditory localization pathway. The integration of auditory localization and visual fixation during prey detection and acquisition might be critical at low light levels. PMID:25120441

Rates and drivers of mangrove deforestation in Southeast Asia, 2000–2012

PubMed Central

Richards, Daniel R.; Friess, Daniel A.

2016-01-01

The mangrove forests of Southeast Asia are highly biodiverse and provide multiple ecosystem services upon which millions of people depend. Mangroves enhance fisheries and coastal protection, and store among the highest densities of carbon of any ecosystem globally. Mangrove forests have experienced extensive deforestation owing to global demand for commodities, and previous studies have identified the expansion of aquaculture as largely responsible. The proportional conversion of mangroves to different land use types has not been systematically quantified across Southeast Asia, however, particularly in recent years. In this study we apply a combined geographic information system and remote sensing method to quantify the key proximate drivers (i.e., replacement land uses) of mangrove deforestation in Southeast Asia between 2000 and 2012. Mangrove forests were lost at an average rate of 0.18% per year, which is lower than previously published estimates. In total, more than 100,000 ha of mangroves were removed during the study period, with aquaculture accounting for 30% of this total forest change. The rapid expansion of rice agriculture in Myanmar, and the sustained conversion of mangroves to oil palm plantations in Malaysia and Indonesia, are identified as additional increasing and under-recognized threats to mangrove ecosystems. Our study highlights frontiers of mangrove deforestation in the border states of Myanmar, on Borneo, and in Indonesian Papua. To implement policies that conserve mangrove forests across Southeast Asia, it is essential to consider the national and subnational variation in the land uses that follow deforestation. PMID:26712025