33 CFR 165.515 - Safety Zone: Cape Fear River, Wilmington, North Carolina.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Safety Zone: Cape Fear River... § 165.515 Safety Zone: Cape Fear River, Wilmington, North Carolina. (a) Location. The following area is a safety zone: (1) The waters of the Cape Fear River bounded by a line connecting the following...

Bounds on strain in large Tertiary shear zones of SE Asia from boudinage restoration

NASA Astrophysics Data System (ADS)

Lacassin, R.; Leloup, P. H.; Tapponnier, P.

1993-06-01

We have used surface-balanced restoration of stretched, boudinaged layers to estimate minimum amounts of finite strain in the mylonitic gneisses of the Oligo-Miocene Red River-Ailao Shan shear zone (Yunnan, China) and of the Wang Chao shear zone (Thailand). The layer-parallel extension values thus obtained range between 250 and 870%. We discuss how to use such extension values to place bounds on amounts of finite shear strain in these large crustal shear zones. Assuming simple shear, these values imply minimum total and late shear strains of, respectively, 33 ± 6 and 7 ± 3 at several sites along the Red River-Ailao Shan shear zone. For the Wang Chao shear zone a minimum shear strain of 7 ± 4 is deduced. Assuming homogeneous shear would imply that minimum strike-slip displacements along these two left-lateral shear zones, which have been interpreted to result from the India-Asia collision, have been of the order of 330 ± 60 km (Red River-Ailao Shan) and 35 ± 20 km (Wang Chao).

The Damage and Geochemical Signature of a Crustal Scale Strike-Slip Fault Zone

NASA Astrophysics Data System (ADS)

Gomila, R.; Mitchell, T. M.; Arancibia, G.; Jensen Siles, E.; Rempe, M.; Cembrano, J. M.; Faulkner, D. R.

2013-12-01

Fluid-flow migration in the upper crust is strongly controlled by fracture network permeability and connectivity within fault zones, which can lead to fluid-rock chemical interaction represented as mineral precipitation in mesh veins and/or mineralogical changes (alteration) of the host rock. While the dimensions of fault damage zones defined by fracture intensity is beginning to be better understood, how such dimensions compare to the size of alteration zones is less well known. Here, we show quantitative structural and chemical analyses as a function of distance from a crustal-scale strike-slip fault in the Atacama Fault System, Northern Chile, to compare fault damage zone characteristics with its geochemical signature. The Jorgillo Fault (JF) is a ca. 18 km long NNW striking strike-slip fault cutting Mesozoic rocks with sinistral displacement of ca. 4 km. In the study area, the JF cuts through orthogranulitic and gabbroic rocks at the west (JFW) and the east side (JFE), respectively. A 200 m fault perpendicular transect was mapped and sampled for structural and XRF analyses of the core, damage zone and protolith. The core zone consists of a ca. 1 m wide cataclasite zone bounded by two fault gouge zones ca. 40 cm. The damage zone width defined by fracture density is ca. 50 m wide each side of the core. The damage zone in JFW is characterized by NW-striking subvertical 2 cm wide cataclastic rocks and NE-striking milimetric open fractures. In JFE, 1-20 mm wide chlorite, quartz-epidote and quartz-calcite veins, cut the gabbro. Microfracture analysis in JFW reveal mm-wide cataclasitic/ultracataclasitic bands with clasts of protolith and chlorite orientated subparallel to the JF in the matrix, calcite veins in a T-fractures orientation, and minor polidirectional chlorite veins. In JFE, chlorite filled conjugate fractures with syntaxial growth textures and evidence for dilational fracturing processes are seen. Closest to the core, calcite veins crosscut chlorite veins. Whole-rock XRF analyses show Al and Ca content decrease with increasing Si, whereas Na increases towards the core. This can be interpreted as compositional changes of plagioclase to albite-rich ones due to chloritic-propylitic alteration. In the damage zone, LOI increases towards the core but decreases inside of it. This is explained by H2O-rich clays and gypsum in the fault core boundary represented as fault gouge zones whereas in the cataclastic core zone, the decrease in LOI is explained by epidote. Our results show the JF had an evolving permeability structure where a cataclasite-rich core is formed at an early stage, and then a gouge-bounded core is developed which acted as a barrier to fluid from east to west of the fault.

BAR Proteins PSTPIP1/2 Regulate Podosome Dynamics and the Resorption Activity of Osteoclasts

PubMed Central

Sztacho, Martin; Segeletz, Sandra; Sanchez-Fernandez, Maria Arantzazu; Czupalla, Cornelia; Niehage, Christian; Hoflack, Bernard

2016-01-01

Bone resorption in vertebrates relies on the ability of osteoclasts to assemble F-actin-rich podosomes that condense into podosomal belts, forming sealing zones. Sealing zones segregate bone-facing ruffled membranes from other membrane domains, and disassemble when osteoclasts migrate to new areas. How podosome/sealing zone dynamics is regulated remains unknown. We illustrate the essential role of the membrane scaffolding F-BAR-Proline-Serine-Threonine Phosphatase Interacting Proteins (PSTPIP) 1 and 2 in this process. Whereas PSTPIP2 regulates podosome assembly, PSTPIP1 regulates their disassembly. PSTPIP1 recruits, through its F-BAR domain, the protein tyrosine phosphatase non-receptor type 6 (PTPN6) that de-phosphophorylates the phosphatidylinositol 5-phosphatases SHIP1/2 bound to the SH3 domain of PSTPIP1. Depletion of any component of this complex prevents sealing zone disassembly and increases osteoclast activity. Thus, our results illustrate the importance of BAR domain proteins in podosome structure and dynamics, and identify a new PSTPIP1/PTPN6/SHIP1/2-dependent negative feedback mechanism that counterbalances Src and PI(3,4,5)P3 signalling to control osteoclast cell polarity and activity during bone resorption. PMID:27760174

Metal-bonded, carbon fiber-reinforced composites

DOEpatents

Sastri, Suri A.; Pemsler, J. Paul; Cooke, Richard A.; Litchfield, John K.; Smith, Mark B.

1996-01-01

Metal bonded carbon fiber-reinforced composites are disclosed in which the metal and the composite are strongly bound by (1) providing a matrix-depleted zone in the composite of sufficient depth to provide a binding site for the metal to be bonded and then (2) infiltrating the metal into the matrix-free zone to fill a substantial portion of the zone and also provide a surface layer of metal, thereby forming a strong bond between the composite and the metal. The invention also includes the metal-bound composite itself, as well as the provision of a coating over the metal for high-temperature performance or for joining to other such composites or to other substrates.

Metal-bonded, carbon fiber-reinforced composites

DOEpatents

Sastri, S.A.; Pemsler, J.P.; Cooke, R.A.; Litchfield, J.K.; Smith, M.B.

1996-03-05

Metal bonded carbon fiber-reinforced composites are disclosed in which the metal and the composite are strongly bound by (1) providing a matrix-depleted zone in the composite of sufficient depth to provide a binding site for the metal to be bonded and then (2) infiltrating the metal into the matrix-free zone to fill a substantial portion of the zone and also provide a surface layer of metal, thereby forming a strong bond between the composite and the metal. The invention also includes the metal-bound composite itself, as well as the provision of a coating over the metal for high-temperature performance or for joining to other such composites or to other substrates. 2 figs.

33 CFR 165.535 - Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 33 Navigation and Navigable Waters 2 2013-07-01 2013-07-01 false Safety Zone: Atlantic Ocean... Guard District § 165.535 Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware. (a) Location. The following area is a safety zone: All waters of the Atlantic Ocean within the area bounded by...

33 CFR 165.535 - Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false Safety Zone: Atlantic Ocean... Guard District § 165.535 Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware. (a) Location. The following area is a safety zone: All waters of the Atlantic Ocean within the area bounded by...

33 CFR 165.535 - Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 33 Navigation and Navigable Waters 2 2012-07-01 2012-07-01 false Safety Zone: Atlantic Ocean... Guard District § 165.535 Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware. (a) Location. The following area is a safety zone: All waters of the Atlantic Ocean within the area bounded by...

33 CFR 165.535 - Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Safety Zone: Atlantic Ocean... Guard District § 165.535 Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware. (a) Location. The following area is a safety zone: All waters of the Atlantic Ocean within the area bounded by...

33 CFR 165.535 - Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 33 Navigation and Navigable Waters 2 2014-07-01 2014-07-01 false Safety Zone: Atlantic Ocean... Guard District § 165.535 Safety Zone: Atlantic Ocean, Vicinity of Cape Henlopen State Park, Delaware. (a) Location. The following area is a safety zone: All waters of the Atlantic Ocean within the area bounded by...

Huge landslide blocks in the growth of piton de la fournaise, La réunion, and Kilauea volcano, Hawaii

USGS Publications Warehouse

Duffield, Wendell A.; Stieltjes, Laurent; Varet, Jacques

1982-01-01

Piton de la Fournaise, on the island of La Réunion, and Kilauea volcano, on the island of Hawaii, are active, basaltic shield volcanoes growing on the flanks of much larger shield volcanoes in intraplate tectonic environments. Past studies have shown that the average rate of magma production and the chemistry of lavas are quite similar for both volcanoes. We propose a structural similarity — specifically, that periodic displacement of parts of the shields as huge landslide blocks is a common mode of growth. In each instance, the unstable blocks are within a rift-zone-bounded, unbuttressed flank of the shield. At Kilauea, well-documented landslide blocks form relatively surficial parts of a much larger rift-zone-bounded block; scarps of the Hilina fault system mark the headwalls of the active blocks. At Fournaise, Hilina-like slump blocks are also present along the unbuttressed east coast of the volcano. In addition, however, the existence of a set of faults nested around the present caldera and northeast and southeast rift zones suggests that past chapters in the history of Fournaise included the slumping of entire rift-zone-bounded blocks themselves. These nested faults become younger to the east southeast and apparently record one of the effects of a migration of the focus of volcanism in that direction. Repeated dilation along the present set of northeast and southeast rift zones, most recently exemplified by an eruption in 1977, suggests that the past history of rift-zone-bounded slumping will eventually be repeated. The record provided by the succession of slump blocks on Fournaise is apparently at a relatively detailed part of a migration of magmatic focus that has advanced at least 30 km to the east-southeast from neighboring Piton des Neiges, an extinct Pliocene to Pleistocene volcano.?? 1982.

Helicobacter pylori Couples Motility and Diffusion to Actively Create a Heterogeneous Complex Medium in Gastric Mucus

NASA Astrophysics Data System (ADS)

Fu, Henry; Mirbagheri, Seyed Amir

2016-11-01

Helicobacter pylori swims through mucus gel by generating ammonia that locally neutralizes the acidic gastric environment, turning nearby gel into a fluid pocket. The size of the fluid zone is important for determining the physics of the motility: in a large zone swimming occurs as in a fluid through hydrodynamic principles, while in a very small zone the motility could be strongly influenced by nonhydrodynamic cell-mucus interactions including chemistry and adhesion. We calculate the size of the fluid pocket. We model how swimming depends on the de-gelation range using a Taylor sheet swimming through a layer of Newtonian fluid bounded by a Brinkman fluid. Then, we model how the de-gelation range depends on the swimming speed by considering the advection-diffusion of ammonia exuded from a translating sphere. Self-consistency between both models determines the values of the swimming speed and the de-gelation range. We find that H. pylori swims through mucus as if unconfined, in a large pocket of Newtonian fluid. Funded by National Science Foundation award CBET-1252182.

Genetic links among fluid cycling, vein formation, regional deformation, and plutonism in the Juneau gold belt, southeastern Alaska

USGS Publications Warehouse

Miller, Lance D.; Goldfarb, Richard J.; Gehrels, George E.; Snee, Lawrence W.

1994-01-01

Gold-bearing quartz vein systems in the Juneau gold belt formed within a 160-km- long by 5- to 8-km-wide zone along the western margin of the Coast Mountains, Alaska. Vein systems are spatially associated with shear zones adjacent to terrane-bounding, mid-Cretaceous thrust faults. Analysis of vein orientations and sense of shear data define a stress configuration with greatest and least principal axes oriented subhorizontally with northeast-southwest trends and subverticaly, respectively. This local stress configuration is compatible with the far-field plate configuration during Eocene time. Isotopic ages of vein formation indicate that fluid cycling occurred between 56.5 and ≥52.8 Ma, and are consistent with a genetic link between veining and a change in plate motion in early Eocene time. Veining was also synchronous with the latter stages of rapid exhumation and voluminous plutonism immediately inboard of the gold belt. We propose a model in which interacting tectonic events facilitated fault-valve action and vein development along now-exhumed shear zones.

76 FR 37000 - Seattle Seafair Unlimited Hydroplane Race

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-24

... area; the waters of Lake Washington bounded by the Interstate 90 (Mercer Island/Lacey V. Murrow) Bridge... along the shoreline of Mercer Island. The regulated area has been divided into two zones. The zones are... race course and then to the northerly tip of Ohlers Island in Andrews Bay. The western zone is...

Kinetic Measurements Reveal Enhanced Protein-Protein Interactions at Intercellular Junctions

PubMed Central

Shashikanth, Nitesh; Kisting, Meridith A.; Leckband, Deborah E.

2016-01-01

The binding properties of adhesion proteins are typically quantified from measurements with soluble fragments, under conditions that differ radically from the confined microenvironment of membrane bound proteins in adhesion zones. Using classical cadherin as a model adhesion protein, we tested the postulate that confinement within quasi two-dimensional intercellular gaps exposes weak protein interactions that are not detected in solution binding assays. Micropipette-based measurements of cadherin-mediated, cell-cell binding kinetics identified a unique kinetic signature that reflects both adhesive (trans) bonds between cadherins on opposing cells and lateral (cis) interactions between cadherins on the same cell. In solution, proposed lateral interactions were not detected, even at high cadherin concentrations. Mutations postulated to disrupt lateral cadherin association altered the kinetic signatures, but did not affect the adhesive (trans) binding affinity. Perturbed kinetics further coincided with altered cadherin distributions at junctions, wound healing dynamics, and paracellular permeability. Intercellular binding kinetics thus revealed cadherin interactions that occur within confined, intermembrane gaps but not in solution. Findings further demonstrate the impact of these revealed interactions on the organization and function of intercellular junctions. PMID:27009566

Turning Around along the Cosmic Web

NASA Astrophysics Data System (ADS)

Lee, Jounghun; Yepes, Gustavo

2016-12-01

A bound violation designates a case in which the turnaround radius of a bound object exceeds the upper limit imposed by the spherical collapse model based on the standard ΛCDM paradigm. Given that the turnaround radius of a bound object is a stochastic quantity and that the spherical model overly simplifies the true gravitational collapse, which actually proceeds anisotropically along the cosmic web, the rarity of the occurrence of a bound violation may depend on the web environment. Assuming a Planck cosmology, we numerically construct the bound-zone peculiar velocity profiles along the cosmic web (filaments and sheets) around the isolated groups with virial mass {M}{{v}}≥slant 3× {10}13 {h}-1 {M}⊙ identified in the Small MultiDark Planck simulations and determine the radial distances at which their peculiar velocities equal the Hubble expansion speed as the turnaround radii of the groups. It is found that although the average turnaround radii of the isolated groups are well below the spherical bound limit on all mass scales, the bound violations are not forbidden for individual groups, and the cosmic web has an effect of reducing the rarity of the occurrence of a bound violation. Explaining that the spherical bound limit on the turnaround radius in fact represents the threshold distance up to which the intervention of the external gravitational field in the bound-zone peculiar velocity profiles around the nonisolated groups stays negligible, we discuss the possibility of using the threshold distance scale to constrain locally the equation of state of dark energy.

33 CFR 165.554 - Security Zone; Three Mile Island Generating Station, Susquehanna River, Dauphin County...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Security Zone; Three Mile Island... Areas Fifth Coast Guard District § 165.554 Security Zone; Three Mile Island Generating Station... waters of the Susquehanna River in the vicinity of the Three Mile Island Generating Station bounded by a...

33 CFR 165.554 - Security Zone; Three Mile Island Generating Station, Susquehanna River, Dauphin County...

Code of Federal Regulations, 2014 CFR

2014-07-01

... 33 Navigation and Navigable Waters 2 2014-07-01 2014-07-01 false Security Zone; Three Mile Island... Areas Fifth Coast Guard District § 165.554 Security Zone; Three Mile Island Generating Station... waters of the Susquehanna River in the vicinity of the Three Mile Island Generating Station bounded by a...

33 CFR 165.554 - Security Zone; Three Mile Island Generating Station, Susquehanna River, Dauphin County...

Code of Federal Regulations, 2013 CFR

2013-07-01

... 33 Navigation and Navigable Waters 2 2013-07-01 2013-07-01 false Security Zone; Three Mile Island... Areas Fifth Coast Guard District § 165.554 Security Zone; Three Mile Island Generating Station... waters of the Susquehanna River in the vicinity of the Three Mile Island Generating Station bounded by a...

33 CFR 165.554 - Security Zone; Three Mile Island Generating Station, Susquehanna River, Dauphin County...

Code of Federal Regulations, 2012 CFR

2012-07-01

... 33 Navigation and Navigable Waters 2 2012-07-01 2012-07-01 false Security Zone; Three Mile Island... Areas Fifth Coast Guard District § 165.554 Security Zone; Three Mile Island Generating Station... waters of the Susquehanna River in the vicinity of the Three Mile Island Generating Station bounded by a...

33 CFR 165.554 - Security Zone; Three Mile Island Generating Station, Susquehanna River, Dauphin County...

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false Security Zone; Three Mile Island... Areas Fifth Coast Guard District § 165.554 Security Zone; Three Mile Island Generating Station... waters of the Susquehanna River in the vicinity of the Three Mile Island Generating Station bounded by a...

Health risk characterization for resident inhalation exposure to particle-bound halogenated flame retardants in a typical e-waste recycling zone.

PubMed

Luo, Pei; Bao, Lian-Jun; Wu, Feng-Chang; Li, Shao-Meng; Zeng, Eddy Y

2014-01-01

Inhalation of pollutants is an important exposure route for causing human health hazards, and inhalation exposure assessment must take into account particle size distribution because particle-bound pollutants are size-dependent. Such information is scarce, particularly for residents dwelling within e-waste recycling zones where abundant atmospheric halogenated flame retardants (HFRs) commonly used in electronic/electrical devices have been widely reported. Atmospheric size-fractioned particle samples were collected using a 10-stage Micro-Orifice Uniform Deposit Impactor from an e-waste recycling zone in South China. The deposition efficiencies and fluxes of size-fractioned HFRs including polybrominated diphenyl ethers (PBDEs), alternative brominated flame retardants, and Dechlorane Plus in the human respiratory tract were estimated using the International Commission on Radiological Protection deposition model. The majority of HFRs was found to deposit in the head airways, with coarse particles (aerodynamic diameter (Dp) > 1.8 μm) contributing the most (69-91%). Conversely, fine particles (Dp < 1.8 μm) were dominant in the alveolar region (62-80%). The inhalation intake of PBDEs within the e-waste recycling zone was 44 ng/d (95% confidence interval (CI): 30-65 ng/d), close to those through food consumption in non-e-waste recycling regions. The estimated total hazard quotient of particle-bound HFRs was 5.6 × 10(-4) (95% CI: 3.8 × 10(-4)-8.8 × 10(-4)). In addition, incremental lifetime cancer risk induced by BDE-209 was 1.36 × 10(-10) (95% CI: 7.3 × 10(-11)-2.3 × 10(-10)), much lower than the Safe Acceptable Range (1.0 × 10(-6)-1.0 × 10(-4)) established by the United States Environmental Protection Agency. These results indicate that the potential health risk from inhalation exposure to particle-bound HFRs for residents dwelling in the e-waste recycling zone was low.

Assessment of the capillary zone electrophoretic behavior of proteins in the presence of electroosmotic modifiers: protein-polyamine interaction studied using a polyacrylamide-coated capillary.

PubMed

Kubo, K; Hattori, A

2001-10-01

The use of polyamines as electroosmotic modifiers has been shown to be effective in enhancing resolution of protein glycoforms in capillary zone electrophoresis (CZE) using a bare capillary tube. In this study, effectiveness was evaluated by using a polyacrylamide-coated capillary tube instead of a bare capillary tube. Electropherograms obtained in the presence of polyamines were inferior to those obtained in their absence with respect to resolution. Electrophoretic mobility of the proteins decreased and their peaks were broadened by polyamines bound to them. This unfavorable effect was dependent on both the species of polyamines and the pH values of the electrolyte buffer. The reduction of resolution caused by polyamines was in the following order: spermidine (SPD) approximately spermidine-tri-hydrochloride (SPD-HCI) > putrescine (PUT) > hexamethonium chloride (HMC). The observed effect can be ascribed to the formation of complexes between the proteins and the polyamines. In addition, for the bare capillary tube the complexes showed interaction with the inner surface, resulting in local suppression of electroosmosis and poor resolution. The high resolution obtained in the coated capillary tube was reduced in the presence of the polyamines. Thus, the use of the polyamines has a negative effect on the analysis of protein microheterogeneity as a result of protein-polyamine interaction.

Coulomb bound states of strongly interacting photons

DOE PAGES

Maghrebi, M. F.; Gullans, Michael J.; Bienias, P.; ...

2015-09-16

We show that two photons coupled to Rydberg states via electromagnetically induced transparency (EIT) can interact via an effective Coulomb potential. The interaction then gives rise to a continuum of two-body bound states. Within the continuum, metastable bound states are distinguished in analogy with quasi-bound states tunneling through a potential barrier. We find multiple branches of metastable bound states whose energy spectrum is governed by the Coulomb problem, thus obtaining a photonic analogue of the hydrogen atom. These states propagate with a negative group velocity in the medium, which allows for a simple preparation and detection scheme, before they slowlymore » decay to pairs of bound Rydberg atoms. As a result, we verify the metastability and backward propagation of these Coulomb bound states with exact numerical simulations.« less

14 CFR Special Federal Aviation... - 2-Special Flight Rules in the Vicinity of the Grand Canyon National Park, AZ

Code of Federal Regulations, 2010 CFR

2010-01-01

... origin. The area between the Thunder River/Toroweap and Shinumo Flight Free Zones is designated the “Fossil Canyon Corridor.” (d) Toroweap/Thunder River Flight-Free Zone. Within an area bounded by a line...

14 CFR Special Federal Aviation... - 2-Special Flight Rules in the Vicinity of the Grand Canyon National Park, AZ

Code of Federal Regulations, 2013 CFR

2013-01-01

... origin. The area between the Thunder River/Toroweap and Shinumo Flight Free Zones is designated the “Fossil Canyon Corridor.” (d) Toroweap/Thunder River Flight-Free Zone. Within an area bounded by a line...

14 CFR Special Federal Aviation... - 2-Special Flight Rules in the Vicinity of the Grand Canyon National Park, AZ

Code of Federal Regulations, 2012 CFR

2012-01-01

... origin. The area between the Thunder River/Toroweap and Shinumo Flight Free Zones is designated the “Fossil Canyon Corridor.” (d) Toroweap/Thunder River Flight-Free Zone. Within an area bounded by a line...

14 CFR Special Federal Aviation... - 2-Special Flight Rules in the Vicinity of the Grand Canyon National Park, AZ

Code of Federal Regulations, 2014 CFR

2014-01-01

... origin. The area between the Thunder River/Toroweap and Shinumo Flight Free Zones is designated the “Fossil Canyon Corridor.” (d) Toroweap/Thunder River Flight-Free Zone. Within an area bounded by a line...

14 CFR Special Federal Aviation... - 2-Special Flight Rules in the Vicinity of the Grand Canyon National Park, AZ

Code of Federal Regulations, 2011 CFR

2011-01-01

... origin. The area between the Thunder River/Toroweap and Shinumo Flight Free Zones is designated the “Fossil Canyon Corridor.” (d) Toroweap/Thunder River Flight-Free Zone. Within an area bounded by a line...

Geometric situation of points of division of regions of direct and return currency in channels with the presence of heating zone limited on the longitudinal coordinate

NASA Astrophysics Data System (ADS)

Gerasimov, A.; Kirpichnikov, A.; Sabirova, F.

2018-03-01

The analysis of energy balance equation for viscous laminar flow of fluid or gas in the cylindrical channel in the area (zone) of warm up bounded along the longitudinal coordinate is made. It was found that at laminar flow of fluid or gas in a round pipe, in each warm up area bounded along the longitudinal coordinate there are the areas of direct and reverse flows separated by a plane that is a locus of points where temperature is maximal for each fixed value of radial coordinate r.

Source character of microseismicity in the San Francisco Bay block, California, and implications for seismic hazard

USGS Publications Warehouse

Olson, J.A.; Zoback, M.L.

1998-01-01

We examine relocated seismicity within a 30-km-wide crustal block containing San Francisco Bay and bounded by two major right-lateral strike-slip fault systems, the Hayward and San Andreas faults, to determine seismicity distribution, source character, and possible relationship to proposed faults. Well-located low-level seismicity (Md ??? 3.0) has occurred persistently within this block throughout the recording interval (1969 to 1995), with the highest levels of activity occurring along or directly adjacent to (within ???5 km) the bounding faults and falling off toward the long axis of the bay. The total seismic moment release within the interior of the Bay block since 1969 is equivalent to one ML 3.8 earthquake, one to two orders of magnitude lower than activity along and within 5 km of the bounding faults. Focal depths of reliably located events within the Bay block are generally less than 13 km with most seismicity in the depth range of 7 to 12 km, similar to focal depths along both the adjacent portions of the San Andreas and Hayward faults. Focal mechanisms for Md 2 to 3 events within the Bay block mimic focal mechanisms along the adjacent San Andreas fault zone and in the East Bay, suggesting that Bay block is responding to a similar regional stress field. Two potential seismic source zones have been suggested within the Bay block. Our hypocentral depths and focal mechanisms suggest that a proposed subhorizontal detachment fault 15 to 18 km beneath the Bay is not seismically active. Several large-scale linear NW-trending aeromagnetic anomalies within the Bay block were previously suggested to represent large through-going subvertical fault zones. The two largest earthquakes (both Md 3.0) in the Bay block since 1969 occur near two of these large-scale linear aeromagnetic anomalies; both have subvertical nodal planes with right-lateral slip subparallel to the magnetic anomalies, suggesting that structures related to the anomalies may be capable of brittle failure. Geodetic, focal mechanism and seismicity data all suggest the Bay block is responding elastically to the same regional stresses affecting the bounding faults; however, continuous Holocene reflectors across the proposed fault zones suggest that if the magnetic anomalies represent basement fault zones, then these faults must have recurrence times one to several orders of magnitude longer than on the bounding faults.

Propagating bound states in the continuum in dielectric gratings

NASA Astrophysics Data System (ADS)

Bulgakov, E. N.; Maksimov, D. N.; Semina, P. N.; Skorobogatov, S. A.

2018-06-01

We consider propagating bound states in the continuum in dielectric gratings. The gratings consist of a slab with ridges periodically arranged ether on top or on the both sides of the slab. Based on the Fourier modal approach we recover the leaky zones above the line of light to identify the geometries of the gratings supporting Bloch bound states propagating in the direction perpendicular to the ridges. Most importantly, it is demonstrated that if a two-side grating possesses either mirror or glide symmetry the Bloch bound states are stable to variation of parameters as far as the above symmetries are preserved.

A Self-Consistent Model of the Interacting Ring Current Ions with Electromagnetic ICWs

NASA Technical Reports Server (NTRS)

Khazanov, G. V.; Gamayunov, K. V.; Jordanova, V. K.; Krivorutsky, E. N.; Whitaker, Ann F. (Technical Monitor)

2001-01-01

Initial results from a newly developed model of the interacting ring current ions and ion cyclotron waves are presented. The model is based on the system of two bound kinetic equations: one equation describes the ring current ion dynamics, and another equation describes wave evolution. The system gives a self-consistent description of ring current ions and ion cyclotron waves in a quasilinear approach. These two equations were solved on a global scale under non steady-state conditions during the May 2-5, 1998 storm. The structure and dynamics of the ring current proton precipitating flux regions and the wave active zones at three time cuts around initial, main, and late recovery phases of the May 4, 1998 storm phase are presented and discussed in detail. Comparisons of the model wave-ion data with the Polar/HYDRA and Polar/MFE instruments results are presented..

Geomorphic evidence of Quaternary tectonics within an underlap fault zone of southern Apennines, Italy

NASA Astrophysics Data System (ADS)

Giano, Salvatore Ivo; Pescatore, Eva; Agosta, Fabrizio; Prosser, Giacomo

2018-02-01

A composite seismic source, the Irpinia - Agri Valley Fault zone, located in the axial sector of the fold-and-thrust belt of southern Apennines, Italy, is investigated. This composite source is made up of a series of nearly parallel, NW-striking normal fault segments which caused many historical earthquakes. Two of these fault segments, known as the San Gregorio Magno and Pergola-Melandro, and the fault-related mountain fronts, form a wedge-shaped, right-stepping, underlap fault zone. This work is aimed at documenting tectonic geomorphology and geology of this underlap fault zone. The goal is to decipher the evidence of surface topographic interaction between two bounding fault segments and their related mountain fronts. In particular, computation of geomorphic indices such as mountain front sinuosity (Smf), water divide sinuosity (Swd), asymmetry factor (AF), drainage basin elongation (Bs), relief ratio (Rh), Hypsometry (HI), normalized steepness (Ksn), and concavity (θ) is integrated with geomorphological analysis, the geological mapping, and structural analysis in order to assess the recent activity of the fault scarp sets recognized within the underlap zone. Results are consistent with the NW-striking faults as those showing the most recent tectonic activity, as also suggested by presence of related slope deposits younger than 38 ka. The results of this work therefore show how the integration of a multidisciplinary approach that combines geomorphology, morphometry, and structural analyses may be key to solving tectonic geomorphology issues in a complex, fold-and-thrust belt configuration.

Genetic and morphological structure of a spruce hybrid (Picea sitchensis x P. glauca) zone along a climatic gradient.

PubMed

Hamilton, Jill A; Aitken, Sally N

2013-08-01

Historic colonization and contemporary evolutionary processes contribute to patterns of genetic variation and differentiation among populations. However, separating the respective influences of these processes remains a challenge, particularly for natural hybrid zones, where standing genetic variation may result from evolutionary processes both preceding and following contact, influencing the evolutionary trajectory of hybrid populations. Where adaptation to novel environments may be facilitated by interspecific hybridization, teasing apart these processes will have practical implications for forest management in changing environments. We evaluated the neutral genetic architecture of the Picea sitchensis (Sitka spruce) × P. glauca (white spruce) hybrid zone along the Nass and Skeena river valleys in northwestern British Columbia using chloroplast, mitochondrial, and nuclear microsatellite markers, in combination with cone morphological traits. Sitka spruce mitotype "capture", evidenced by this species dominating the maternal lineage, is consistent with earlier colonization of the region by Sitka spruce. This "capture" differs from the spatial distribution of chloroplast haplotypes, indicating pollen dispersal and its contribution to geographic structure. Genetic ancestry, based on nuclear markers, was strongly influenced by climate and geography. Highly parallel results for replicate transects along environmental gradients provide support for the bounded hybrid superiority model of hybrid zone maintenance. • This broad-scale analysis of neutral genetic structure indicates the importance of historic and contemporary gene flow, environmental selection, and their interaction in shaping neutral genetic variation within this hybrid zone, informative to seed transfer development and reforestation for future climates.

COMPUTING THE DUST DISTRIBUTION IN THE BOW SHOCK OF A FAST-MOVING, EVOLVED STAR

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Marle, A. J.; Meliani, Z.; Keppens, R.

2011-06-20

We study the hydrodynamical behavior occurring in the turbulent interaction zone of a fast-moving red supergiant star, where the circumstellar and interstellar material collide. In this wind-interstellar-medium collision, the familiar bow shock, contact discontinuity, and wind termination shock morphology form, with localized instability development. Our model includes a detailed treatment of dust grains in the stellar wind and takes into account the drag forces between dust and gas. The dust is treated as pressureless gas components binned per grain size, for which we use 10 representative grain size bins. Our simulations allow us to deduce how dust grains of varyingmore » sizes become distributed throughout the circumstellar medium. We show that smaller dust grains (radius <0.045 {mu}m) tend to be strongly bound to the gas and therefore follow the gas density distribution closely, with intricate fine structure due to essentially hydrodynamical instabilities at the wind-related contact discontinuity. Larger grains which are more resistant to drag forces are shown to have their own unique dust distribution, with progressive deviations from the gas morphology. Specifically, small dust grains stay entirely within the zone bound by shocked wind material. The large grains are capable of leaving the shocked wind layer and can penetrate into the shocked or even unshocked interstellar medium. Depending on how the number of dust grains varies with grain size, this should leave a clear imprint in infrared observations of bow shocks of red supergiants and other evolved stars.« less

TECHNICAL BASIS DOCUMENT OF MARSSIM FIELD CALIBRATION FOR QUANTIFICATION OF CS-137 VOLUMETRICALLY CONTAMINTED SOILS IN THE BC CONTROLLED AREA USING A 4 BY 4 BY 16 INCH SODIUM IODIDE DETECTOR

DOE Office of Scientific and Technical Information (OSTI.GOV)

PAPPIN JL

The purpose of this paper is to provide the Technical Basis and Documentation for Field Calibrations of radiation measurement equipment for use in the MARSSIM Seeping Surveys of the BC Controlled Area (BCCA). The Be Controlled Area is bounded on tt1e north by (but does not include) the BCCribs & Trenches and is bounded on the south by Army Loop Road. Parts of the BC Controlled Area are posted as a Contamination Area and the remainder is posted as a Soil Contamination Area. The area is approximately 13 square miles and divided into three zones (Zone A , Zone B.more » and Zone C). A map from reference 1 which shows the 3 zones is attached. The MARSSIM Scoping Surveys are intended 10 better identify the boundaries of the three zones based on the volumetric (pCi/g) contamination levels in the soil. The MARSSIM Field Calibration. reference 2. of radiation survey instrumentation will determine the Minimum Detectable Concentration (MDC) and an algorithm for converting counts to pCi/g. The instrumentation and corresponding results are not intended for occupational radiation protection decisions or for the release of property per DOE Order 5400.5.« less

Experimental investigation of change of energy of infragavity waves in dependence on spectral characteristics of an irregular wind waves in coastal zone

NASA Astrophysics Data System (ADS)

Saprykina, Yana; Divinskii, Boris

2013-04-01

An infragravity waves are long waves with periods of 20 - 300 s. Most essential influence of infragarvity waves on dynamic processes is in a coastal zone, where its energy can exceed the energy of wind waves. From practical point of view, the infragravity waves are important, firstly, due to their influence on sand transport processes in a coastal zone. For example, interacting with group structure of wind waves the infragravity waves can define position of underwater bars on sandy coast. Secondly, they are responsible on formation of long waves in harbors. Main source of infragravity waves is wave group structure defined by sub-nonlinear interactions of wind waves (Longuet-Higgins, Stewart, 1962). These infragravity waves are bound with groups of wind waves and propagate with wave group velocity. Another type of infragravity waves are formed in a surf zone as a result of migration a wave breaking point (Symonds, et al., 1982). What from described above mechanisms of formation of infragravity waves prevails, till now it is unknown. It is also unknown how energy of infragravity waves depends on energy of input wind waves and how it changes during nonlinear wave transformation in coastal zone. In our work on the basis of the analysis of data of field experiment and numerical simulation a contribution of infragravity waves in total wave energy in depending on integral characteristics of an irregular wave field in the conditions of a real bathymetry was investigated. For analysis the data of field experiment "Shkorpilovtsy-2007" (Black sea) and data of numerical modeling of Boussinesq type equation with extended dispersion characteristics (Madsen et al., 1997) were used. It was revealed that infragravity waves in a coastal zone are defined mainly by local group structure of waves, which permanently changes due to nonlinearity, shoaling and breaking processes. Free infragravity waves appearing after wave breaking exist together with bound infragravity waves. There are no clear total dependences of energy of infrragravity waves from energy of wind waves and mean period of infragravity waves from mean period of wind waves. But significant wave height of infragravity waves depends on relative water depth (wave height of wind waves divided on water depth). There are different types of this dependence for breaking and non-breaking waves. The influence of peak period, significant wave height and directional spreading of initial wave spectrum on these dependences are discussed. The peculiarities of spectra of infragravity waves for non-breaking, breaking and multibreaking wind waves are shown. This work is supported by the RFBR, project 12-05-00965. References: Longuet-Higgins, M. S., R. W. Stewart, 1962. Radiation stress and mass transport in gravity waves, with an application to surf beats. J. Fluid Mech., 13, pp. 481-504. Symonds G., D.A. Huntley, A.J. Bowen, 1982. Two dimensional surf beat: long wave generation by a time-varying breakpoint. J. of Geoph. Res., 87(C), pp.492-498. Madsen P.A., Sorensen O.R., Shaffer H.A. 1997. Surf zone dynamics simulated by a Boussinesq type model. Coastal Engineering, 32, p. 255-287.

Geometry and kinematics of the Triassic rift basin in Jameson Land (East Greenland)

NASA Astrophysics Data System (ADS)

Guarnieri, Pierpaolo; Brethes, Anaïs.; Rasmussen, Thorkild M.

2017-04-01

The Triassic rift basin along the east Greenland margin described in this paper is represented by NE-SW trending basins and highs segmented by NW-SE trending transfer zones. Coarse-grained sediments along the eastern side of Jameson Land are shown to be hosted in half-graben structures belonging to the Carlsberg Fjord Basin that is bounded by NW dipping normal faults mapped and described after fieldwork in the Klitdal area in Liverpool Land. New aeromagnetic and electromagnetic data together with new drill cores allow the reinterpretation of available seismic lines showing the continuation of the Triassic rift basin toward the SW where it is buried under the Upper Triassic postrift sediments and the Jurassic successions of the Jameson Land Basin. The N-S trending Liverpool Land, interpreted as the boundary block of the Triassic basin, is shown to represent a structural high inherited from the Late Carboniferous tectonics and faulted during the Triassic rifting. The Carlsberg Fjord Basin and the Klitdal Fault System described in this paper should be seen as analogues to the Helgeland Basin in the Norwegian offshore that is bounded by the Ylvingen Fault Zone and to the Papa and West of Shetlands Basins that are bounded by the Spine Fault. The Triassic rift zone and transfer faults on both conjugate margins show a straightforward correlation with the trends of the initial spreading line and fracture zones of the northeast Atlantic indicating a possible inheritance of the Triassic rifting.

The role of bed-parallel slip in the development of complex normal fault zones

NASA Astrophysics Data System (ADS)

Delogkos, Efstratios; Childs, Conrad; Manzocchi, Tom; Walsh, John J.; Pavlides, Spyros

2017-04-01

Normal faults exposed in Kardia lignite mine, Ptolemais Basin, NW Greece formed at the same time as bed-parallel slip-surfaces, so that while the normal faults grew they were intermittently offset by bed-parallel slip. Following offset by a bed-parallel slip-surface, further fault growth is accommodated by reactivation on one or both of the offset fault segments. Where one fault is reactivated the site of bed-parallel slip is a bypassed asperity. Where both faults are reactivated, they propagate past each other to form a volume between overlapping fault segments that displays many of the characteristics of relay zones, including elevated strains and transfer of displacement between segments. Unlike conventional relay zones, however, these structures contain either a repeated or a missing section of stratigraphy which has a thickness equal to the throw of the fault at the time of the bed-parallel slip event, and the displacement profiles along the relay-bounding fault segments have discrete steps at their intersections with bed-parallel slip-surfaces. With further increase in displacement, the overlapping fault segments connect to form a fault-bound lens. Conventional relay zones form during initial fault propagation, but with coeval bed-parallel slip, relay-like structures can form later in the growth of a fault. Geometrical restoration of cross-sections through selected faults shows that repeated bed-parallel slip events during fault growth can lead to complex internal fault zone structure that masks its origin. Bed-parallel slip, in this case, is attributed to flexural-slip arising from hanging-wall rollover associated with a basin-bounding fault outside the study area.

Interactions between macromolecule-bound antioxidants and Trolox during liposome autoxidation: A multivariate approach.

PubMed

Çelik, Ecem Evrim; Rubio, Jose Manuel Amigo; Andersen, Mogens L; Gökmen, Vural

2017-12-15

The interactions between free and macromolecule-bound antioxidants were investigated in order to evaluate their combined effects on the antioxidant environment. Dietary fiber (DF), protein and lipid-bound antioxidants, obtained from whole wheat, soybean and olive oil products, respectively and Trolox were used for this purpose. Experimental studies were carried out in autoxidizing liposome medium by monitoring the development of fluorescent products formed by lipid oxidation. Chemometric methods were used both at experimental design and multivariate data analysis stages. Comparison of the simple addition effects of Trolox and bound antioxidants with measured values on lipid oxidation revealed synergetic interactions for DF and refined olive oil-bound antioxidants, and antagonistic interactions for protein and extra virgin olive oil-bound antioxidants with Trolox. A generalized version of logistic function was successfully used for modelling the oxidation curve of liposomes. Principal component analysis revealed two separate phases of liposome autoxidation. Copyright © 2017 Elsevier Ltd. All rights reserved.

The Proterozoic Mount Isa Fault Zone, northeastern Australia: is it really a ca. 1.9 Ga terrane-bounding suture?

NASA Astrophysics Data System (ADS)

Bierlein, Frank P.; Betts, Peter G.

2004-09-01

In marked contrast to Palaeoproterozoic Laurentia, the location of sutures and boundaries of discrete crustal fragments amalgamated during Palaeoproterozoic formation of the North Australian Craton remain highly speculative. Interpretations of suture locations have relied heavily on the analysis of regional geophysical datasets because of sparse exposure of rocks of the appropriate age. The Mount Isa Fault Zone has been interpreted as one such Palaeoproterozoic terrane-bounding suture. Furthermore, the coincidence of this fault zone with major shale-hosted massive sulphide Pb-Zn-Ag orebodies has led to speculations that trans-lithospheric faults may be an important ingredient for the development of this deposit type. This study has integrated geophysical and geochemical data to test the statute of the Mount Isa Fault as a terrane-bounding suture. Forward modelling of gravity data shows that basement rocks on either side of the Mount Isa Fault have similar densities. These interpretations are consistent with geochemical observations and Sm-Nd data that suggest that basement lithologies on either side of the Mount Isa Fault are geochemically and isotopically indistinguishable from each other, and that the Mount Isa Fault is unlikely to represent a suture zone that separates different Palaeoproterozoic terranes. Our data indicate that the crustal blocks on both sides of the Mount Isa Fault Zone must have been in within close proximity of each other since the Palaeoproterozoic, and that the Western Fold Belt was part of the (ancestral) North Australian Craton well before the ˜1.89-1.87 Ga Barramundi Orogeny. It appears that deep crustal variations in density may be related to the boundary between a shallowly west-dipping high-density mafic to ultramafic plate and low-density basement rocks. This interpretation in turn impacts on crustal-scale models for the development of shale-hosted massive sulphide Pb-Zn mineralisation, which do not require trans-lithospheric faults to tap deep-seated metal reservoirs and/or mantle plumbing systems. The approach applied herein demonstrates the value of multi-disciplinary investigations to the critical assessment of long-lived Proterozoic fault systems which, in the absence of methodical analysis, are commonly assumed to represent terrane-bounding sutures.

New insights into the Edwards Aquifer—Brackish-water simulation, drought, and the role of uncertainty analysis

USGS Publications Warehouse

Foster, Linzy K.; White, Jeremy T.

2016-02-03

The Edwards aquifer consists of three water-quality zones. The freshwater zone of the Edwards aquifer is bounded to the south by a zone of brackish water (transition zone) where the aquifer transitions from fresh to saline water. The saline zone is downdip from the transition zone. There is concern that a recurrence of extreme drought, such as the 7-year drought from 1950 through 1956, could cause the transition zone to move toward (encroach upon) the freshwater zone, causing production wells near the transition zone to pump saltier water. There is also concern of drought effects on spring flows from Comal and San Marcos Springs. These concerns were evaluated through the development of a new numerical model of the Edwards aquifer.

Skew information in the XY model with staggered Dzyaloshinskii-Moriya interaction

NASA Astrophysics Data System (ADS)

Qiu, Liang; Quan, Dongxiao; Pan, Fei; Liu, Zhi

2017-06-01

We study the performance of the lower bound of skew information in the vicinity of transition point for the anisotropic spin-1/2 XY chain with staggered Dzyaloshinskii-Moriya interaction by use of quantum renormalization-group method. For a fixed value of the Dzyaloshinskii-Moriya interaction, there are two saturated values for the lower bound of skew information corresponding to the spin-fluid and Néel phases, respectively. The scaling exponent of the lower bound of skew information closely relates to the correlation length of the model and the Dzyaloshinskii-Moriya interaction shifts the factorization point. Our results show that the lower bound of skew information can be a good candidate to detect the critical point of XY spin chain with staggered Dzyaloshinskii-Moriya interaction.

76 FR 50710 - Security Zones; Cruise Ships, San Pedro Bay, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-16

... located within the San Pedro Bay port area landward of the sea buoys bounding the Port of Los Angeles or... port area landward of the sea buoys bounding the Port of Los Angeles or Port of Long Beach or at... authorized by the Captain of the Port (COTP) Los Angeles--Long Beach, or his designated representative. DATES...

Household's willingness to pay for arsenic safe drinking water in Bangladesh.

PubMed

Khan, Nasreen Islam; Brouwer, Roy; Yang, Hong

2014-10-01

This study examines willingness to pay (WTP) in Bangladesh for arsenic (As) safe drinking water across different As-risk zones, applying a double bound discrete choice value elicitation approach. The study aims to provide a robust estimate of the benefits of As safe drinking water supply, which is compared to the results from a similar study published almost 10 years ago using a single bound estimation procedure. Tests show that the double bound valuation design does not suffer from anchoring or incentive incompatibility effects. Health risk awareness levels are high and households are willing to pay on average about 5 percent of their disposable average annual household income for As safe drinking water. Important factors influencing WTP include the bid amount to construct communal deep tubewell for As safe water supply, the risk zone where respondents live, household income, water consumption, awareness of water source contamination, whether household members are affected by As contamination, and whether they already take mitigation measures. Copyright © 2014 Elsevier Ltd. All rights reserved.

Interacting quantum walkers: two-body bosonic and fermionic bound states

NASA Astrophysics Data System (ADS)

Krapivsky, P. L.; Luck, J. M.; Mallick, K.

2015-11-01

We investigate the dynamics of bound states of two interacting particles, either bosons or fermions, performing a continuous-time quantum walk on a one-dimensional lattice. We consider the situation where the distance between both particles has a hard bound, and the richer situation where the particles are bound by a smooth confining potential. The main emphasis is on the velocity characterizing the ballistic spreading of these bound states, and on the structure of the asymptotic distribution profile of their center-of-mass coordinate. The latter profile generically exhibits many internal fronts.

77 FR 35848 - Safety Zone, Fourth of July Fireworks Event, Pagan River, Smithfield, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-15

.... ACTION: Temporary Final rule. SUMMARY: The Coast Guard is establishing a 420-foot radius safety zone on..., and falling hot embers or other debris, vessel traffic will be temporarily restricted within 420 feet... navigable waters of the Pagan River within the area bounded by a 420-foot radius circle centered on position...

The continent-ocean transition at the mid-northern margin of the South China Sea

NASA Astrophysics Data System (ADS)

Gao, Jinwei; Wu, Shiguo; McIntosh, Kirk; Mi, Lijun; Yao, Bochu; Chen, Zeman; Jia, Liankai

2015-07-01

The northern margin of the South China Sea (SCS) has particular structural and stratigraphic characteristics that are somewhat different from those described in typical passive margin models. The differences are attributable to poly-phase tectonic movements and magmatic activity resulting from the interaction among the Eurasian, Philippine Sea and Indo-Australian plates. Based on several crustal-scale multi-channel seismic reflection profiles and satellite gravity data across the northern SCS margin, this paper analyzes the structures, volcanoes and deep crust of the continent-ocean transition zone (COT) at the mid-northern margin of the SCS to study the patterns and model of extension there. The results indicate that the COT is limited landward by basin-bounding faults near Baiyun sag and is bounded by seaward-dipping normal faults near the oceanic basin in our seismic lines. The shallow anatomy of the COT is characterized by rift depression, structural highs with igneous rock and/or a volcanic zone or a zone of tilted fault blocks at the distal edge. Gravity modeling revealed that a high velocity layer (HVL) with a 0.8-6-km thickness is frequently present in the slope below the lower crust. Our study shows that the HVL is only located in the eastern portion of the northern SCS margin based on the available geophysical data. We infer from this that the presence of an HVL is not required in the COT at the northern SCS margin. The magmatic intrusions and HVL may be related to partial melting caused by the decompression of a passive, upwelling asthenosphere, which resulted primarily in post-rifting underplating and magmatic emplacement or modification of the crust. Based on this study, we propose that an intermediate mode of rifting was active in the mid-northern margin of the SCS with characteristics that are closer to those of the magma-poor margins than those of volcanic margins.

A detached eddy simulation model for the study of lateral separation zones along a large canyon-bound river

USGS Publications Warehouse

Alvarez, Laura V.; Schmeeckle, Mark W.; Grams, Paul E.

2017-01-01

Lateral flow separation occurs in rivers where banks exhibit strong curvature. In canyon-boundrivers, lateral recirculation zones are the principal storage of fine-sediment deposits. A parallelized,three-dimensional, turbulence-resolving model was developed to study the flow structures along lateralseparation zones located in two pools along the Colorado River in Marble Canyon. The model employs thedetached eddy simulation (DES) technique, which resolves turbulence structures larger than the grid spacingin the interior of the flow. The DES-3D model is validated using Acoustic Doppler Current Profiler flowmeasurements taken during the 2008 controlled flood release from Glen Canyon Dam. A point-to-pointvalidation using a number of skill metrics, often employed in hydrological research, is proposed here forfluvial modeling. The validation results show predictive capabilities of the DES model. The model reproducesthe pattern and magnitude of the velocity in the lateral recirculation zone, including the size and position ofthe primary and secondary eddy cells, and return current. The lateral recirculation zone is open, havingcontinuous import of fluid upstream of the point of reattachment and export by the recirculation returncurrent downstream of the point of separation. Differences in magnitude and direction of near-bed andnear-surface velocity vectors are found, resulting in an inward vertical spiral. Interaction between therecirculation return current and the main flow is dynamic, with large temporal changes in flow direction andmagnitude. Turbulence structures with a predominately vertical axis of vorticity are observed in the shearlayer becoming three-dimensional without preferred orientation downstream.

Potential health risk for residents around a typical e-waste recycling zone via inhalation of size-fractionated particle-bound heavy metals.

PubMed

Huang, Chun-Li; Bao, Lian-Jun; Luo, Pei; Wang, Zhao-Yi; Li, Shao-Meng; Zeng, Eddy Y

2016-11-05

Health risk of residents dwelling around e-waste recycling zones has been a global concern, but has not been adequately examined. The present study was intended to evaluate the potential health risk of residents through inhalation exposure to size-fractionated particle-bound heavy metals in a typical e-waste recycling zone, South China. Anthropogenic metals (Zn, Se, Pb, Sb, As, and Cd) were predominantly enriched in fine particles (Dp<1.8μm), whereas the crustal elements (Ti, Fe, and Co) tended to accumulate in coarse particles (Dp>1.8μm). Although the daily inhalation intakes of the target metals were significantly lower than those through food consumption and ingestion of house dust, the hazard quotients of total metals for adults (95% CI: 1.0-5.5) and children (95% CI: 3.0-17) were greater than 1. Moreover, the incremental lifetime cancer risks of five carcinogenic metals (Cr, Co, Ni, As, and Cd) for adults and children were 1.3×10(-3) (95% CI: 4.1×10(-4)-3.0×10(-3)) and 3.9×10(-3) (95% CI: 1.3×10(-3)-8.6×10(-3)), respectively, substantially higher than the acceptable cancer risk range of 10(-6)-10(-4). All these findings suggested that health risks were high for local residents dwelling around the e-waste recycling zone through inhalation exposure to particle-bound heavy metals, for both adults and children. Copyright © 2016 Elsevier B.V. All rights reserved.

Geophysical methods as mapping tools in a strata-bound gold deposit: Haile mine, South Carolina slate belt.

USGS Publications Warehouse

Wynn, J.C.; Luce, R.W.

1984-01-01

The Haile mine is the largest gold producer in the eastern USA. It is postulated to be a strata-bound gold deposit formed by a fumarolic or hot-spring system in felsic tuffs of Cambrian(?) age. Two mineralized zones occur, each composed of a sericitic part overlain by a siliceous part. Au is concentrated in especially silicified horizons and in pyrite horizons in the siliceous part of each mineralized zone. The tuffs are metamorphosed to greenschist facies and intruded by diabase and other mafic dykes. Weathering is deep and the mineralized tuffs are partly covered by coastal-plain sediments. It is suggested that certain geophysical methods may be useful in mapping and exploring Haile-type deposits in the Carolina slate belt. Very low frequency electromagnetic resistivity surveys help define alteration and silicified zones. A magnetic survey found sharp highs that correlate with unexposed mafic and ultramafic dykes. Induced polarization proved useful in giving a two-dimensional view of the structure.-G.J.N.

Mirror energy difference and the structure of loosely bound proton-rich nuclei around A =20

NASA Astrophysics Data System (ADS)

Yuan, Cenxi; Qi, Chong; Xu, Furong; Suzuki, Toshio; Otsuka, Takaharu

2014-04-01

The properties of loosely bound proton-rich nuclei around A =20 are investigated within the framework of the nuclear shell model. In these nuclei, the strength of the effective interactions involving the loosely bound proton s1/2 orbit is significantly reduced in comparison with that of those in their mirror nuclei. We evaluate the reduction of the effective interaction by calculating the monopole-based-universal interaction (VMU) in the Woods-Saxon basis. The shell-model Hamiltonian in the sd shell, such as USD, can thus be modified to reproduce the binding energies and energy levels of the weakly bound proton-rich nuclei around A =20. The effect of the reduction of the effective interaction on the structure and decay properties of these nuclei is also discussed.

Observation of three-photon bound states in a quantum nonlinear medium

NASA Astrophysics Data System (ADS)

Liang, Qi-Yu; Venkatramani, Aditya V.; Cantu, Sergio H.; Nicholson, Travis L.; Gullans, Michael J.; Gorshkov, Alexey V.; Thompson, Jeff D.; Chin, Cheng; Lukin, Mikhail D.; Vuletić, Vladan

2018-02-01

Bound states of massive particles, such as nuclei, atoms, or molecules, constitute the bulk of the visible world around us. By contrast, photons typically only interact weakly. We report the observation of traveling three-photon bound states in a quantum nonlinear medium where the interactions between photons are mediated by atomic Rydberg states. Photon correlation and conditional phase measurements reveal the distinct bunching and phase features associated with three-photon and two-photon bound states. Such photonic trimers and dimers possess shape-preserving wave functions that depend on the constituent photon number. The observed bunching and strongly nonlinear optical phase are described by an effective field theory of Rydberg-induced photon-photon interactions. These observations demonstrate the ability to realize and control strongly interacting quantum many-body states of light.

A reaction-transport model for calcite precipitation and evaluation of infiltration fluxes in unsaturated fractured rock.

PubMed

Xu, Tianfu; Sonnenthal, Eric; Bodvarsson, Gudmundur

2003-06-01

The percolation flux in the unsaturated zone (UZ) is an important parameter addressed in site characterization and flow and transport modeling of the potential nuclear-waste repository at Yucca Mountain, NV, USA. The US Geological Survey (USGS) has documented hydrogenic calcite abundances in fractures and lithophysal cavities at Yucca Mountain to provide constraints on percolation fluxes in the UZ. The purpose of this study was to investigate the relationship between percolation flux and measured calcite abundances using reactive transport modeling. Our model considers the following essential factors affecting calcite precipitation: (1) infiltration, (2) the ambient geothermal gradient, (3) gaseous CO(2) diffusive transport and partitioning in liquid and gas phases, (4) fracture-matrix interaction for water flow and chemical constituents, and (5) water-rock interaction. Over a bounding range of 2-20 mm/year infiltration rate, the simulated calcite distributions capture the trend in calcite abundances measured in a deep borehole (WT-24) by the USGS. The calcite is found predominantly in fractures in the welded tuffs, which is also captured by the model simulations. Simulations showed that from about 2 to 6 mm/year, the amount of calcite precipitated in the welded Topopah Spring tuff is sensitive to the infiltration rate. This dependence decreases at higher infiltration rates owing to a modification of the geothermal gradient from the increased percolation flux. The model also confirms the conceptual model for higher percolation fluxes in the fractures compared to the matrix in the welded units, and the significant contribution of Ca from water-rock interaction. This study indicates that reactive transport modeling of calcite deposition can yield important constraints on the unsaturated zone infiltration-percolation flux and provide useful insight into processes such as fracture-matrix interaction as well as conditions and parameters controlling calcite deposition.

Transferred-NOE NMR experiments on intact human platelets: receptor-bound conformation of RGD-peptide mimics.

PubMed

Potenza, Donatella; Belvisi, Laura

2008-01-21

The aim of this work is to show that transferred-NOE provides useful and detailed information on membrane-bound receptor-ligand interactions in living cells. Here, we study the interaction between intact human platelets and some ligands containing the RGD sequence. Conformational properties of the free and bound pentapeptides are reported.

76 FR 38570 - Safety Zone; Fourth of July Fireworks Event, Pagan River, Smithfield, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-01

.... ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a 420-foot radius safety zone on..., vessel traffic will be temporarily restricted within 420 feet of the fireworks launch site. Discussion of... the area bounded by a 420-foot radius circle centered on position 36[deg]59'18'' N/076[deg]37'45'' W...

75 FR 34372 - Safety Zone; Fourth of July Fireworks Event, Pagan River, Smithfield, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-17

.... ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a 420-foot radius safety zone on... other debris, vessel traffic will be temporarily restricted within 420 feet of the fireworks launch site... within the area bounded by a 420-foot radius circle centered on position 36[deg]59'18'' N/076[deg]37'45...

33 CFR 165.1154 - Security Zones; Cruise Ships, San Pedro Bay, California.

Code of Federal Regulations, 2012 CFR

2012-07-01

... within the San Pedro Bay area landward of the sea buoys bounding the port of Los Angeles or Port of Long... which is on the high seas; and for which passengers are embarked or disembarked in the Port of Los Angeles or Port of Long Beach. (b) Location. The following areas are security zones: All navigable waters...

33 CFR 165.1154 - Security Zones; Cruise Ships, San Pedro Bay, California.

Code of Federal Regulations, 2014 CFR

2014-07-01

... within the San Pedro Bay area landward of the sea buoys bounding the port of Los Angeles or Port of Long... which is on the high seas; and for which passengers are embarked or disembarked in the Port of Los Angeles or Port of Long Beach. (b) Location. The following areas are security zones: All navigable waters...

33 CFR 165.1154 - Security Zones; Cruise Ships, San Pedro Bay, California.

Code of Federal Regulations, 2013 CFR

2013-07-01

... within the San Pedro Bay area landward of the sea buoys bounding the port of Los Angeles or Port of Long... which is on the high seas; and for which passengers are embarked or disembarked in the Port of Los Angeles or Port of Long Beach. (b) Location. The following areas are security zones: All navigable waters...

RICE bounds on cosmogenic neutrino fluxes and interactions

NASA Astrophysics Data System (ADS)

Hussain, Shahid

2005-04-01

Assuming standard model interactions we calculate shower rates induced by cosmogenic neutrinos in ice, and we bound the cosmogenic neutrino fluxes using RICE 2000-2004 results. Next we assume new interactions due to extra- dimensional, low-scale gravity (i.e. black hole production and decay; graviton mediated deep inelastic scattering) and calculate enhanced shower rates induced by cosmogenic neutrinos in ice. With the help of RICE 2000-2004 results, we survey bounds on low scale gravity parameters for a range of cosmogenic neutrino flux models.

Identifying and Quantifying Chemical Forms of Sediment-Bound Ferrous Iron.

NASA Astrophysics Data System (ADS)

Kohler, M.; Kent, D. B.; Bekins, B. A.; Cozzarelli, I.; Ng, G. H. C.

2015-12-01

Aqueous Fe(II) produced by dissimilatory iron reduction comprises only a small fraction of total biogenic Fe(II) within an aquifer. Most biogenic Fe(II) is bound to sediments on ion exchange sites; as surface complexes and, possibly, surface precipitates; or incorporated into solid phases (e.g., siderite, magnetite). Different chemical forms of sediment-bound Fe(II) have different reactivities (e.g., with dissolved oxygen) and their formation or destruction by sorption/desorption and precipitation/dissolution is coupled to different solutes (e.g., major cations, H+, carbonate). We are quantifying chemical forms of sediment-bound Fe(II) using previously published extractions, novel extractions, and experimental studies (e.g., Fe isotopic exchange). Sediments are from Bemidji, Minnesota, where biodegradation of hydrocarbons from a burst oil pipeline has driven extensive dissimilatory Fe(III) reduction, and sites potentially impacted by unconventional oil and gas development. Generally, minimal Fe(II) was mobilized from ion exchange sites (batch desorption with MgCl2 and repeated desorption with NH4Cl). A < 2mm sediment fraction from the iron-reducing zone at Bemidji had 1.8umol/g Fe(II) as surface complexes or carbonate phases (sodium acetate at pH 5) of which ca. 13% was present as surface complexes (FerroZine extractions). Total bioavailable Fe(III) and biogenic Fe(II) (HCl extractions) was 40-50 umole/g on both background and iron-reducing zone sediments . Approximately half of the HCl-extractable Fe from Fe-reducing zone sediments was Fe(II) whereas 12 - 15% of Fe extracted from background sediments was present as Fe(II). One-third to one-half of the total biogenic Fe(II) extracted from sediments collected from a Montana prairie pothole located downgradient from a produced-water disposal pit was present as surface-complexed Fe(II).

The hydrogeology of Kilauea volcano

USGS Publications Warehouse

Ingebritsen, S.E.; Scholl, M.A.

1993-01-01

The hydrogeology of Kilauea volcano and adjacent areas has been studied since the turn of this century. However, most studies to date have focused on the relatively shallow, low-salinity parts of the ground-water system, and the deeper hydrothermal system remains poorly understood. The rift zones of adjacent Mauna Loa volcano bound the regional ground-water flow system that includes Kilauea, and the area bounded by the rift zones of Kilauea and the ocean may comprise a partly isolated subsystem. Rates of ground-water recharge vary greatly over the area and discharge is difficult to measure, because streams are ephemeral and most ground-water discharges diffusely at or below sea level. Hydrothermal systems exist at depth in Kilauea's cast and southwest rift zone, as evidenced by thermal springs at the coast and wells in the lower east-rift zone. Available data suggest that dike-impounded, heated ground water occurs at relatively high elevations in the upper east-and southwest-rift zones of Kilauea, and that permeability at depth in the rift zones (probably 10 10 m2). Substantial variations in permeability and the presence of magmatic heat sources influence the structure of the fresh water-salt water interface, so the Ghyben-Herzberg model will often fail to predict its position. Numerical modeling studies have considered only subsets of the hydrothermal system, because no existing computer code solves the coupled fluid-flow, heat- and solute-transport problem over the temperature and salinity range encountered at Kilauea. ?? 1993.

Structural controls of the Tuscarora geothermal field, Elko County, Nevada

NASA Astrophysics Data System (ADS)

Dering, G.; Faulds, J. E.

2012-12-01

Tuscarora is an amagmatic geothermal system located ~90 km northwest of Elko, Nevada, in the northern part of the Basin and Range province ~15 km southeast of the Snake River Plain. Detailed geologic mapping, structural analysis, and well data have been integrated to identify the structural controls of the Tuscarora geothermal system. The structural framework of the geothermal field is defined by NNW- to NNE-striking normal faults that are approximately orthogonal to the present extension direction. Boiling springs, fumaroles, and siliceous sinter emanate from a single NNE-striking, west-dipping normal fault. Normal faults west of these hydrothermal features mostly dip steeply east, whereas normal faults east of the springs primarily dip west. Thus, the springs, fumaroles, and sinter straddle a zone of interaction between fault sets that dip toward each other, classified as a strike-parallel anticlinal accommodation zone. Faults within the geothermal area are mostly discontinuous along strike with offsets of tens to hundreds of meters, whereas the adjacent range-bounding fault systems of the Bull Run and Independence Mountains accommodate several kilometers of displacement. The geothermal field lies within a broad step over between the southward terminating west-dipping Bull Run fault zone and the northward terminating west-dipping Independence Mountains fault zone. Neither of these major fault zones is known to host high temperature geothermal systems. The accommodation zone lies within the broad step over and contains both east-dipping antithetic and west-dipping synthetic faults. Accommodation zones are relatively common structural components of extended terranes that transfer strain between oppositely dipping fault sets via a network of subsidiary normal faults. This study has identified the hinge zone of an anticlinal accommodation zone as the site most conducive to fluid up-flow. The recognition of this specific portion of an accommodation zone as a favorable structural setting for geothermal activity may be a useful exploration tool for development of drilling targets in extensional terranes, as well as for developing geologic models of known geothermal fields. This type of information may ultimately help to reduce the risks of targeting successful geothermal wells in such settings.

Intrinsic homogeneous linewidth and broadening mechanisms of excitons in monolayer transition metal dichalcogenides

DOE PAGES

Moody, Galan; Dass, Chandriker Kavir; Hao, Kai; ...

2015-09-18

In this paper, the band-edge optical response of transition metal dichalcogenides, an emerging class of atomically thin semiconductors, is dominated by tightly bound excitons localized at the corners of the Brillouin zone (valley excitons). A fundamental yet unknown property of valley excitons in these materials is the intrinsic homogeneous linewidth, which reflects irreversible quantum dissipation arising from system (exciton) and bath (vacuum and other quasiparticles) interactions and determines the timescale during which excitons can be coherently manipulated. Here we use optical two-dimensional Fourier transform spectroscopy to measure the exciton homogeneous linewidth in monolayer tungsten diselenide (WSe 2). The homogeneous linewidthmore » is found to be nearly two orders of magnitude narrower than the inhomogeneous width at low temperatures. We evaluate quantitatively the role of exciton–exciton and exciton–phonon interactions and population relaxation as linewidth broadening mechanisms. The key insights reported here—strong many-body effects and intrinsically rapid radiative recombination—are expected to be ubiquitous in atomically thin semiconductors.« less

Intrinsic homogeneous linewidth and broadening mechanisms of excitons in monolayer transition metal dichalcogenides

PubMed Central

Moody, Galan; Kavir Dass, Chandriker; Hao, Kai; Chen, Chang-Hsiao; Li, Lain-Jong; Singh, Akshay; Tran, Kha; Clark, Genevieve; Xu, Xiaodong; Berghäuser, Gunnar; Malic, Ermin; Knorr, Andreas; Li, Xiaoqin

2015-01-01

The band-edge optical response of transition metal dichalcogenides, an emerging class of atomically thin semiconductors, is dominated by tightly bound excitons localized at the corners of the Brillouin zone (valley excitons). A fundamental yet unknown property of valley excitons in these materials is the intrinsic homogeneous linewidth, which reflects irreversible quantum dissipation arising from system (exciton) and bath (vacuum and other quasiparticles) interactions and determines the timescale during which excitons can be coherently manipulated. Here we use optical two-dimensional Fourier transform spectroscopy to measure the exciton homogeneous linewidth in monolayer tungsten diselenide (WSe2). The homogeneous linewidth is found to be nearly two orders of magnitude narrower than the inhomogeneous width at low temperatures. We evaluate quantitatively the role of exciton–exciton and exciton–phonon interactions and population relaxation as linewidth broadening mechanisms. The key insights reported here—strong many-body effects and intrinsically rapid radiative recombination—are expected to be ubiquitous in atomically thin semiconductors. PMID:26382305

Applications of UThPb isotope systematics to the problems of radioactive waste disposal

USGS Publications Warehouse

Stuckless, J.S.

1986-01-01

Concentrations of U, Th and Pb, and the isotopic composition of Pb for whole-rock samples of granitoids show: (1) that open-system behavior is nearly universal in the surface and near-surface environment; and (2) that elemental mobility is possible to depths of several hundred meters. Several identified or at least postulated factors that control U and/or Pb mobility include: (1) the mineralogical sites for U and its daughter products; (2) access of groundwater to these sites; (3) the volume of circulating water; and (4) the chemistry of the groundwater. Studies of granitic samples from peralkaline complexes in the Arabian Shield have shown that most samples lost less than 20% of their U during recent exposure to the near-surface environment. Most of the U in these samples appears to be firmly bound in zircons. In contrast, most surface and shallow drill-core samples of the granite of Lankin Dome (Granite Mountains, Wyoming) have lost ??? 70% of their U. Most of the U in these samples is weakly bound in biotite and epidote-family minerals. The granite recovered during the Illinois Deep Drill Hole Project (Stephenson County, Illinois) is mineralogically similar to the granite of Lankin Dome, but this granite lost radiogenic Pb rather than U, probably as a result of exposure to groundwater that had a markedly different chemistry from that in the Granite Mountains. Studies of the Sherman Granite (Wyoming) and the Go??temar Granite (southeastern Sweden) have shown that U and/or Pb mobility is greatest in and near fractured rock. The greater mobility is interpreted to be the result of both a larger water/rock ratio in the fractured rock and exposure to water over an increased surface area (and consequently a greater number of uranium sites). Several types of geochemical and mineralogic data can be used to identify rock-water interaction in granites; however, if rock samples have favorable radiogenic to common Pb ratios, both the amount and approximate timing of U or Pb mobility can be obtained through the use of isotopic studies. Such information can be extremely important in the search for favorable hosts for containment of radioactive waste. Rocks such as the Go??temar Granite have undergone considerable rock-water interaction, most of which occurred ??? 400 Myr. ago and little in recent times. Thus a search for zones that have experienced only a little interaction with water may provide a misleading prediction as to the ability of such zones to shield radioactive wastes from the modern biosphere. From an isotopic point of view, an ideal candidate for evaluation as a host rock for radioactive wastes would have the following characteristics: (1) a high ratio (> 2) of radiogenic to common Pb in order to optimize precision of the results; (2) a simple two-stage geologic history so that results could be interpreted without multiple working hypotheses; and (3) an originally high percentage (> 50%) of labile U so that the results would be highly sensitive to even small amount of rock-water interaction. These characteristics should produce rocks with marked radioactive disequilibrium in surface samples. The disequilibrium should grade to radioactive equilibrium with increasing depth until zones in which water has not circulated are found. Extensive regions of such zones must exist because UThPb systematics of most analyzed granitoids demonstrate closed-system behavior for almost all of their history except for their recent history in the near-surface environment. ?? 1986.

New insight into the levels, distribution and health risk diagnosis of indoor and outdoor dust-bound FRs in colder, rural and industrial zones of Pakistan.

PubMed

Khan, Muhammad Usman; Li, Jun; Zhang, Gan; Malik, Riffat Naseem

2016-09-01

This is the first robust study designed to probe selected flame retardants (FRs) in the indoor and outdoor dust of industrial, rural and background zones of Pakistan with special emphasis upon their occurrence, distribution and associated health risk. For this purpose, we analyzed FRs such as polybrominated diphenylethers (PBDEs), dechlorane plus (DP), novel brominated flame retardants (NBFRs) and organophosphate flame retardants (OPFRs) in the total of 82 dust samples (indoor and outdoor) collected three from each zone: industrial, rural and background. We found higher concentrations of FRs (PBDEs, DP, NBFRs and OPFRs) in industrial zones as compared to the rural and background zones. Our results reveal that the concentrations of studied FRs are relatively higher in the indoor dust samples being compared with the outdoor dust and they are ranked as: ∑OPFRs > ∑NBFRs > ∑PBDEs > ∑DP. A significant correlation in the FRs levels between the indoor and outdoor dust suggest the potential intermixing of these compounds between them. The principal component analysis/multiple linear regression predicts the percent contribution of FRs from different consumer products in the indoor and outdoor dust of industrial, rural and background zones to trace their source origin. The FRs detected in the background zones reveal the dust-bound FRs suspended in the air might be shifted from different warmer zones or consumers products available/used in the same zones. Hazard quotient (HQ) for FRs via indoor and outdoor dust intake at mean and high dust scenarios to the exposed populations (adults and toddlers) are found free of risk (HQ < 1) in the target zones. Furthermore, our nascent results will provide a baseline record of FRs (PBDEs, DP, NBFRs and OPFRs) concentrations in the indoor and outdoor dust of Pakistan. Copyright © 2016 Elsevier Ltd. All rights reserved.

33 CFR 165.1103 - Security Zone; Naval Mine Anti Submarine Warfare Command; San Diego Bay, San Diego, CA.

Code of Federal Regulations, 2014 CFR

2014-07-01

... Submarine Warfare Command; San Diego Bay, San Diego, CA. 165.1103 Section 165.1103 Navigation and Navigable... Eleventh Coast Guard District § 165.1103 Security Zone; Naval Mine Anti Submarine Warfare Command; San... the Naval Mine Anti Submarine Warfare Command, bound by the following coordinates: 32°43′40.9″ N, 117...

Dendrochemistry of multiple releases of chlorinated solvents at a former industrial site

USGS Publications Warehouse

Balouet, Jean Christophe; Burken, Joel G.; Karg, Frank; Vroblesky, Don; Smith, Kevin T.; Grudd, Hakan; Rindby, Anders; Beaujard, Francois; Chalot, Michel

2012-01-01

Trees can take up and assimilate contaminants from the soil, subsurface, and groundwater. Contaminants in the transpiration stream can become bound or incorporated into the annual rings formed in trees of the temperate zones. The chemical analysis of precisely dated tree rings, called dendrochemistry, can be used to interpret past plant interactions with contaminants. This investigation demonstrates that dendrochemistry can be used to generate historical scenarios of past contamination of groundwater by chlorinated solvents at a site in Verl, Germany. Increment cores from trees at the Verl site were collected and analyzed by energy-dispersive X-ray fluorescence (EDXRF) line scanning. The EDXRF profiles showed four to six time periods where tree rings had anomalously high concentrations of chlorine (Cl) as an indicator of potential contamination by chlorinated solvents.

Stratigraphy of the late Proterozoic Murdama Group, Saudi Arabia

USGS Publications Warehouse

Greene, Robert C.

1993-01-01

The Murdama group probably was deposited in a back-arc basin on a continental platform bounded on the west by an active volcanic arc above an east-dipping subduction zone. The position of the subduction zone, which was active during most of the deposition in the Afif belt, is marked by a belt of gabbro and ultramafic rocks herein named the jabal Burqah belt. The subduction zone later stepped out to the southwest to the Nabitah belt, and Murdama strata were deposited in the Jabal Hadhah, Mistahjed, and smaller basins.

Premixed Turbulent Combustion in High Reynolds Number Regimes of Thickened Flamelets and Distributed Reactions

DTIC Science & Technology

2016-03-24

thickened preheat (TP) regime that is bounded by the Klimov-Williams limit, (b) the broken reaction layers (BR) boundary and the partially-distributed...b) the broken reaction layers (BR) boundary that is bounded by Norbert Peters predicted limit, and the partially-distributed reactions (PDR...Nomenclature BR = broken reaction layer boundary DR = distributed reaction zone boundary Ka = Karlovitz number of Peters (Eq. 1) equal to (δF,L

High resolution modeling of dense water formation in the north-western Mediterranean during winter 2012-2013: Processes and budget

NASA Astrophysics Data System (ADS)

Estournel, Claude; Testor, Pierre; Damien, Pierre; D'Ortenzio, Fabrizio; Marsaleix, Patrick; Conan, Pascal; Kessouri, Faycal; Durrieu de Madron, Xavier; Coppola, Laurent; Lellouche, Jean-Michel; Belamari, Sophie; Mortier, Laurent; Ulses, Caroline; Bouin, Marie-Noelle; Prieur, Louis

2016-07-01

The evolution of the stratification of the north-western Mediterranean between summer 2012 and the end of winter 2013 was simulated and compared with different sets of observations. A summer cruise and profiler observations were used to improve the initial conditions of the simulation. This improvement was crucial to simulate winter convection. Variations of some parameters involved in air - sea exchanges (wind, coefficient of transfer used in the latent heat flux formulation, and constant additive heat flux) showed that the characteristics of water masses and the volume of dense water formed during convection cannot be simply related to the time-integrated buoyancy budget over the autumn - winter period. The volume of dense water formed in winter was estimated to be about 50,000 km3 with a density anomaly larger than 29.113 kg m-3. The effect of advection and air/sea fluxes on the heat and salt budget of the convection zone was quantified during the preconditioning phase and the mixing period. Destratification of the surface layer in autumn occurs through an interaction of surface and Ekman buoyancy fluxes associated with displacements of the North Balearic front bounding the convection zone to the south. During winter convection, advection stratifies the convection zone: from December to March, the absolute value of advection represents 58 % of the effect of surface buoyancy fluxes.

Flow-path textures and mineralogy in tuffs of the unsaturated zone

USGS Publications Warehouse

Levy, Schön; Chipera, Steve; WoldeGabriel, Giday; Fabryka-Martin, June; Roach, Jeffrey; Sweetkind, Donald S.; Haneberg, William C.; Mozley, Peter S.; Moore, J. Casey; Goodwin, Laurel B.

1999-01-01

The high concentration of chlorine-36 (36Cl) produced by above-ground nuclear tests (bomb-pulse) provides a fortuitous tracer for infiltration during the last 50 years, and is used to detect fast flow in the unsaturated zone at Yucca Mountain, Nevada, a thick deposit of welded and nonwelded tuffs. Evidence of fast flow as much as 300 m into the mountain has been found in several zones in a 7.7-km tunnel. Many zones are associated with faults that provide continuous fracture flow paths from the surface. In the Sundance fault zone, water with the bomb-pulse signature has moved into subsidiary fractures and breccia zones. We found no highly distinctive mineralogic associations of fault and fracture samples containing bomb-pulse 36Cl. Bomb-pulse sites are slightly more likely to have calcite deposits than are non-bomb-pulse sites. Most other mineralogic and textural associations of fast-flow paths reflect the structural processes leading to locally enhanced permeability rather than the effects of ground-water percolation. Water movement through the rock was investigated by isotopic analysis of paired samples representing breccia zones and fractured wall rock bounding the breccia zones. Where bomb-pulse 36Cl is present, the waters in bounding fractures and intergranular pores of the fast pathways are not in equilibrium with respect to the isotopic signal. In structural domains that have experienced extensional deformation, fluid flow within a breccia is equivalent to matrix flow in a particulate rock, whereas true fracture flow occurs along the boundaries of a breccia zone. Where shearing predominated over extension, the boundary between wall rock and breccia is rough and irregular with a tight wallrock/breccia contact. The absence of a gap between the breccia and the wall rock helps maintain fluid flow within the breccia instead of along the wallrock/breccia boundary, leading to higher 36Cl/Cl values in the breccia than in the wall rock.

Size-dependent distribution and inhalation cancer risk of particle-bound polycyclic aromatic hydrocarbons at a typical e-waste recycling and an urban site.

PubMed

Luo, Pei; Bao, Lian-Jun; Li, Shao-Meng; Zeng, Eddy Y

2015-05-01

Atmospheric particle size distribution of polycyclic aromatic hydrocarbons (PAHs) in a typical e-waste recycling zone and an urban site (Guangzhou) in southern China featured a unimodal peak in 0.56-1.8 μm for 4-6 ring PAHs but no obvious peak for 2-3 ring PAHs at both sites. The atmospheric deposition fluxes of PAHs were estimated at 5.4 ± 2.3 μg m(-2) d(-1) in the e-waste recycling zone and 3.1 ± 0.6 μg m(-2) d(-1) in Guangzhou. In addition, dry and wet deposition fluxes of PAHs were dominated by coarse (Dp > 1.8 μm) and fine particles (Dp < 1.8 μm), respectively. Fine particles predominated the deposition of PAHs in the lung. The results estimated by incremental inhalation cancer risk suggested that particle-bound PAHs posed serious threat to human health within the e-waste recycling zone and Guangzhou. Copyright © 2015 Elsevier Ltd. All rights reserved.

Nonvolcanic Deep Tremors in the Transform Plate Bounding San Andreas Fault Zone

NASA Astrophysics Data System (ADS)

Nadeau, R. M.; Dolenc, D.

2004-12-01

Recently, deep ( ˜ 20 to 40 km) nonvolcanic tremor activity has been observed on convergent plate boundaries in Japan and in the Cascadia region of North America (Obara, 2002; Rodgers and Dragert, 2003; Szeliga et al., 2004). Because of the abundance of available fluids from subduction processes in these convergent zones, fluids are believed to play an important role in the generation of the tremor activity. The transient rates of tremor activity in these regions are also observed to correlate either with the occurrence of larger earthquakes (Obara, 2002) or with geodetically determined transient creep events that release large amounts of strain energy deep beneath the locked Cascadia megathrust (M.M. Miller et al., 2002; Rodgers and Dragert, 2003; Szeliga et al., 2004). These associations suggest that nonvolcanic tremor activity may participate in a fundamental mode of deep moment release and in the triggering of large subduction zone events (Rodgers and Dragert, 2003). We report the discovery of deep ( ˜ 20 to 45 km) nonvolcanic tremor activity on the transform plate bounding San Andreas Fault (SAF) in central California where, in contrast to subduction zones, long-term deformation directions are horizontal and fluid availability from subduction zone processes is absent. The source region of the SAF tremors lies beneath the epicentral region of the great 1857 magnitude (M) ˜ 8, Fort Tejon earthquake whose rupture zone is currently locked (Sieh, 1978). Activity rate transients of the tremors occurring since early 2001 also correlate with seismicity rate variations above the tremor source region.

Binding of bisphenol A, bisphenol AF, and bisphenol S on the androgen receptor: Coregulator recruitment and stimulation of potential interaction sites.

PubMed

Perera, Lalith; Li, Yin; Coons, Laurel A; Houtman, Rene; van Beuningen, Rinie; Goodwin, Bonnie; Auerbach, Scott S; Teng, Christina T

2017-10-01

Bisphenol A (BPA), bisphenol AF (BPAF), and bisphenol S (BPS) are well known endocrine disruptors. Previous in vitro studies showed that these compounds antagonize androgen receptor (AR) transcriptional activity; however, the mechanisms of action are unclear. In the present study, we investigated interactions of coregulator peptides with BPA, BPAF, or BPS at the AR complexes using Micro Array for Real-time Coregulator Nuclear Receptor Interaction (MARCoNI) assays and assessed the binding of these compounds on AR by molecular dynamics (MD) simulations. The set of coregulator peptides that are recruited by BPA-bound AR, either positively/or negatively, are different from those recruited by the agonist R1881-bound AR. Therefore, the data indicates that BPA shows no similarities to R1881 and suggests that it may recruit other coregulators to the AR complex. BPAF-bound AR recruits about 70-80% of the same coregulator peptides as BPA-bound AR. Meanwhile, BPS-bound AR interacts with only few peptides compared to BPA or BPAF-bound AR. MD results show that multiple binding sites with varying binding affinities are available on AR for BPA, BPAF, and BPS, indicating the availability of modified binding surfaces on AR for coregulator interactions. These findings help explain some of the distinct AR-related toxicities observed with bisphenol chemicals and raise concern for the use of substitutes for BPA in commercial products. Published by Elsevier Ltd.

ESP Toolbox: A Computational Framework for Precise, Scale-Independent Analysis of Bulk Elastic and Seismic Properties

NASA Astrophysics Data System (ADS)

Johnson, S. E.; Vel, S. S.; Cook, A. C.; Song, W. J.; Gerbi, C. C.; Okaya, D. A.

2014-12-01

Owing to the abundance of highly anisotropic minerals in the crust, the Voigt and Reuss bounds on the seismic velocities can be separated by more than 1 km/s. These bounds are determined by modal mineralogy and crystallographic preferred orientations (CPO) of the constituent minerals, but where the true velocities lie between these bounds is determined by other fabric parameters such as the shapes, shape-preferred orientations, and spatial arrangements of grains. Thus, the calculation of accurate bulk stiffness relies on explicitly treating the grain-scale heterogeneity, and the same principle applies at larger scales, for example calculating accurate bulk stiffness for a crustal volume with varying proportions and distributions of folds or shear zones. We have developed stand-alone GUI software - ESP Toolbox - for the calculation of 3D bulk elastic and seismic properties of heterogeneous and polycrystalline materials using image or EBSD data. The GUI includes a number of different homogenization techniques, including Voigt, Reuss, Hill, geometric mean, self-consistent and asymptotic expansion homogenization (AEH) methods. The AEH method, which uses a finite element mesh, is most accurate since it explicitly accounts for elastic interactions of constituent minerals/phases. The user need only specify the microstructure and material properties of the minerals/phases. We use the Toolbox to explore changes in bulk elasticity and related seismic anisotropy caused by specific variables, including: (a) the quartz alpha-beta phase change in rocks with varying proportions of quartz, (b) changes in modal mineralogy and CPO fabric that occur during progressive deformation and metamorphism, and (c) shear zones of varying thickness, abundance and geometry in continental crust. The Toolbox allows rapid sensitivity analysis around these and other variables, and the resulting bulk stiffness matrices can be used to populate volumes for synthetic wave propagation experiments that allow direct visualization of how variables of interest might affect propagation at a variety of scales. Sensitivity analyses also illustrate the value of the more precise AEH method. The ESP Toolbox can be downloaded here: http://umaine.edu/mecheng/faculty-and-staff/senthil-vel/software/

Effect of phospholipid, detergent and protein-protein interaction on stability and phosphoenzyme isomerization of soluble sarcoplasmic reticulum Ca-ATPase.

PubMed

Vilsen, B; Andersen, J P

1987-12-30

The purpose of the present study was to elucidate the separate roles of lipid, detergent and protein-protein interaction for stability and catalytic properties of sarcoplasmic reticulum Ca-ATPase solubilized in the non-ionic detergent octa(ethylene glycol) monododecyl ether (C12E8). The use of large-zone high-performance liquid chromatography permitted us to define the self-association state of Ca-ATPase peptide at various detergent, phospholipid and protein concentrations, and also during enzymatic turnover with ATP. Conditions were established for monomerization of Ca-ATPase in the presence of a high concentration of phospholipid relative to detergent. The lipid-saturated monomeric preparation was relatively resistant to inactivation in the absence of Ca2+, whereas delipidated enzyme in monomeric or in oligomeric form was prone to inactivation. Kinetics of phosphoenzyme turnover were examined in the presence and absence of Mg2+. Dephosphorylation rates were sensitive to Mg2+, irrespective of whether the peptide was present in soluble monomeric form or was membrane-bound. C12E8-solubilized monomer without added phospholipid was, however, characterized by a fast initial phase of dephosphorylation in the absence of Mg2+. This was not observed with monomer saturated with phospholipid or with monomer solubilized in myristoylglycerophosphocholine or deoxycholate. The mechanism underlying this difference was shown to be a C12E8-induced acceleration of conversion of ADP-sensitive phosphoenzyme (E1P) to ADP-insensitive phosphoenzyme (E2P). The phosphoenzyme isomerization rate was also found to be enhanced by low-affinity binding of ATP. This was demonstrated both in membrane-bound and in soluble monomeric Ca-ATPase. Our results indicate that a single peptide chain constitutes the target for modulation of phosphoenzyme turnover by Mg2+ and ATP, and that detergent effects, distinct from those arising from disruption of protein-protein contacts, are the major determinants of kinetic differences between C12E8-solubilized and membrane-bound enzyme preparations.

Circular dichroism study of the interaction between mutagens and bilirubin bound to different binding sites of serum albumins

NASA Astrophysics Data System (ADS)

Orlov, Sergey; Goncharova, Iryna; Urbanová, Marie

Although recent investigations have shown that bilirubin not only has a negative role in the organism but also exhibits significant antimutagenic properties, the mechanisms of interactions between bilirubin and mutagens are not clear. In this study, interaction between bilirubin bound to different binding sites of mammalian serum albumins with structural analogues of the mutagens 2-aminofluorene, 2,7-diaminofluorene and mutagen 2,4,7-trinitrofluorenone were investigated by circular dichroism and absorption spectroscopy. Homological human and bovine serum albumins were used as chiral matrices, which preferentially bind different conformers of bilirubin in the primary binding sites and make it observable by circular dichroism. These molecular systems approximated a real system for the study of mutagens in blood serum. Differences between the interaction of bilirubin bound to primary and to secondary binding sites of serum albumins with mutagens were shown. For bilirubin bound to secondary binding sites with low affinity, partial displacement and the formation of self-associates were observed in all studied mutagens. The associates of bilirubin bound to primary binding sites of serum albumins are formed with 2-aminofluorene and 2,4,7-trinitrofluorenone. It was proposed that 2,7-diaminofluorene does not interact with bilirubin bound to primary sites of human and bovine serum albumins due to the spatial hindrance of the albumins binding domains. The spatial arrangement of the bilirubin bound to serum albumin along with the studied mutagens was modelled using ligand docking, which revealed a possibility of an arrangement of the both bilirubin and 2-aminofluorene and 2,4,7-trinitrofluorenone in the primary binding site of human serum albumin.

Commentary on fast atmospheric pulsations. Technical report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vampola, A.L.

A recent paper proposed that Fast Atmospheric Light Pulsations (FAPs), which have been observed at L=1.5-2.2 in the northern hemisphere, are optical signatures of >2-MeV electrons associated with Lightning-induced Electron Precipitation (LEP) events produced by lightning strokes in the southern hemisphere. FAPs cannot be produced by >2-MeV electrons in the inner radiation belt because the upper limit for fluxes of such particles is only about 0.2% of the value that was used in the analysis and would lead to an unrealistically short electron lifetime. The discrepancy comes from using an electron model, AE-2, which included the Starfish fission electrons. Latermore » inner-zone electron environment models show the inner-zone to have negligible fluxes of electrons in excess of 2 MeV. The use of a model in which southern hemisphere lightning strokes result in northern hemisphere FAPs via a cyclotron mode interaction between magnetospheric electrons and lightning generated waves is also untenable because it would result in FAP intensities two orders of magnitude greater in the southern hemisphere than in the northern hemisphere, leading to a further two orders of magnitude reduction in estimated inner-zone electron lifetimes. The estimated light intensity of FAPs is within acceptable bounds compared to the lifetime of inner zone electrons if all electrons above 100 keV contribute to the light production, if southern hemisphere FAP intensity is no greater than the FAP intensity observed in the northern hemisphere, and if the light-production efficiency is of the order of .001.« less

76 FR 4833 - Security Zones; Cruise Ships, Port of San Diego, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-27

...The Coast Guard proposes to amend 33 CFR 165.1108, Security Zones; Cruise Ships, Port of San Diego, California, by providing a common description of all security zones created by this section to encompass only navigable waters within a 100 yard radius around any cruise ship that is located within the San Diego port area landward of the sea buoys bounding the Port of San Diego. This notice of proposed rulemaking is necessary to provide for the safety of the cruise ship, vessels, and users of the waterway. Entry into these security zones will be prohibited unless specifically authorized by the Captain of the Port (COTP) San Diego, or his designated representative.

Improving the Lieb-Robinson Bound for Long-Range Interactions

NASA Astrophysics Data System (ADS)

Matsuta, Takuro; Koma, Tohru; Nakamura, Shu

2017-02-01

We improve the Lieb-Robinson bound for a wide class of quantum many-body systems with long-range interactions decaying by power law. As an application, we show that the group velocity of information propagation grows by power law in time for such systems, whereas systems with short-range interactions exhibit a finite group velocity as shown by Lieb and Robinson.

Tectonic evolution of the Qumran Basin from high-resolution 3.5-kHz seismic profiles and its implication for the evolution of the northern Dead Sea Basin

NASA Astrophysics Data System (ADS)

Lubberts, Ronald K.; Ben-Avraham, Zvi

2002-02-01

The Dead Sea Basin is a morphotectonic depression along the Dead Sea Transform. Its structure can be described as a deep rhomb-graben (pull-apart) flanked by two block-faulted marginal zones. We have studied the recent tectonic structure of the northwestern margin of the Dead Sea Basin in the area where the northern strike-slip master fault enters the basin and approaches the western marginal zone (Western Boundary Fault). For this purpose, we have analyzed 3.5-kHz seismic reflection profiles obtained from the northwestern corner of the Dead Sea. The seismic profiles give insight into the recent tectonic deformation of the northwestern margin of the Dead Sea Basin. A series of 11 seismic profiles are presented and described. Although several deformation features can be explained in terms of gravity tectonics, it is suggested that the occurrence of strike-slip in this part of the Dead Sea Basin is most likely. Seismic sections reveal a narrow zone of intensely deformed strata. This zone gradually merges into a zone marked by a newly discovered tectonic depression, the Qumran Basin. It is speculated that both structural zones originate from strike-slip along right-bending faults that splay-off from the Jordan Fault, the strike-slip master fault that delimits the active Dead Sea rhomb-graben on the west. Fault interaction between the strike-slip master fault and the normal faults bounding the transform valley seems the most plausible explanation for the origin of the right-bending splays. We suggest that the observed southward widening of the Dead Sea Basin possibly results from the successive formation of secondary right-bending splays to the north, as the active depocenter of the Dead Sea Basin migrates northward with time.

Tertiary extension and mineral deposits, southwestern U.S.

USGS Publications Warehouse

Rehrig, William A.; Hardy, James.J.

1996-01-01

Starting in Las Vegas, we will traverse through many of the geometric elements and complexities of hanging wall deformation above the regional detachment systems of the Colorado River extensional terrane. We will study the interaction of normal faults as arranged in regional, crustal-scale mega-domains and the bounding structures that separate these tilt domains. As we progress through the classic Eldorado Mountains-Hoover Dam region, where many of the ideas of listric normal faulting were first popularized, we will see both the real rocks and the historic rationale for their deformation. By examining the listric versus domino models for normal faulting, we will utilize different geometric techniques for determining the depth to the detachment structures and percent extension. Continuing further south toward southernmost Nevada, we will cross the accommodation zone that separates the Lake Mead and Whipple dip domains and further descend to deeper structural levels to examine lower levels of the major normal faults and their tilting of upper-crustal blocks and associated offset along the regional detachment faults. Fluid flow within the shattered fault zones and its relationship to the 3-D geometries of the fault surfaces will be studied both along the faults and within the hydrothermally altered and mineralized wallrocks.

‘Column on column’ structures as indicators of lava/ice interaction, Ruapehu andesite volcano, New Zealand

NASA Astrophysics Data System (ADS)

Spörli, K. B.; Rowland, J. V.

2006-10-01

Lava flows of the Mangawhero Formation (ca. 15-60 ka) on Ruapehu volcano erupted during the last glaciation. In a distal flow lobe at Tukino, on the east side of the mountain, small secondary columns (10-20 cm thick) have formed on the sides of large, rectangular, primary (0.5-3 m thick) cooling columns. Thick (10 m+) zones of such small columns form a lateral and basal outer rind of the lobe. As they do not mark glassy zones of quenching, these secondary columns are interpreted as being formed by a second cooling event at temperatures below the boundary between the low creep and elastic regimes (˜ 600 °C) by rapid influx of copious amounts of water. Temperature drops deduced from extensional strains of the two sets of columns were used to gauge the viability of such a two-stage process. Absence of reliable data on andesite contraction coefficients was overcome by using a sliding scale to assess a large range of values. The estimates indicate that two-stage chilling is feasible. After flowing across relatively ice-poor terrain, the lava flow must have interacted with a valley glacier that provided water for further chilling the already formed primary columns and formation of the outer rind small columns. Given this evidence for lava/ice interaction, it is likely that prominent, thick flows elsewhere in the Mangawhero Formation may have been constrained to their ridge-top locations by ice conditions similar to those described by Lescinsky and Sisson [Lescinsky, D.T., Sisson, T.W., 1998. Ridge-forming, ice-bounded lava flows at Mount Rainier, Washington. Geology, 26, 351-354].

The hydrogeology of Kilauea volcano

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ingebritsen, S.E.; Scholl, M.A.

1993-08-01

The hydrogeology of Kilauea volcano and adjacent areas has been studied since the turn of this century. However, most studies to date have focused on the relatively shallow, low-salinity parts of the ground-water system, and the deeper hydrothermal system remains poorly understood. The rift zones of adjacent Mauna Loa volcano bound the regional ground-water flow system that includes Kilauea, and the area bounded by the rift zones of Kilauea and the ocean may comprise a partly isolated subsystem. Rates of ground-water recharge vary greatly over the area, and discharge is difficult to measure, because streams are ephemeral and most ground-watermore » discharges diffusely at or below sea level. Hydrothermal systems exist at depth in Kilauea's east and southwest rift zone, as evidenced by thermal springs at the coast and wells in the lower east-rift zone. Available data suggest that dike-impounded, heated ground water occurs at relatively high elevations in the upper east- and southwest-rift zones of Kilauea, and that permeability at depth in the rift zones. Available data suggest that dike-impounded, heated ground water occurs at relatively high elevations in the upper east- and southwest-rift zones of Kilauea, and that permeability at depth in the rift zones (probably [le]10[sup [minus]15] m[sup 2]) is much lower than that of unaltered basalt flows closer to the surface ([ge]10[sup [minus]10] m[sup 2]). Substantial variations in permeability and the presence of magmatic heat sources influence that structure of the fresh water-salt water interface, so the Ghyben-Herzberg model will often fail to predict its position. Numerical modeling studies have considered only subsets of the hydrothermal system, because no existing computer code solves the coupled fluid-flow, heat- and solute-transport problem over the temperature and salinity range encountered at Kilauea. 73 refs., 7 figs., 2 tabs.« less

DnaA protein DNA-binding domain binds to Hda protein to promote inter-AAA+ domain interaction involved in regulatory inactivation of DnaA.

PubMed

Keyamura, Kenji; Katayama, Tsutomu

2011-08-19

Chromosomal replication is initiated from the replication origin oriC in Escherichia coli by the active ATP-bound form of DnaA protein. The regulatory inactivation of DnaA (RIDA) system, a complex of the ADP-bound Hda and the DNA-loaded replicase clamp, represses extra initiations by facilitating DnaA-bound ATP hydrolysis, yielding the inactive ADP-bound form of DnaA. However, the mechanisms involved in promoting the DnaA-Hda interaction have not been determined except for the involvement of an interaction between the AAA+ domains of the two. This study revealed that DnaA Leu-422 and Pro-423 residues within DnaA domain IV, including a typical DNA-binding HTH motif, are specifically required for RIDA-dependent ATP hydrolysis in vitro and that these residues support efficient interaction with the DNA-loaded clamp·Hda complex and with Hda in vitro. Consistently, substitutions of these residues caused accumulation of ATP-bound DnaA in vivo and oriC-dependent inhibition of cell growth. Leu-422 plays a more important role in these activities than Pro-423. By contrast, neither of these residues is crucial for DNA replication from oriC, although they are highly conserved in DnaA orthologues. Structural analysis of a DnaA·Hda complex model suggested that these residues make contact with residues in the vicinity of the Hda AAA+ sensor I that participates in formation of a nucleotide-interacting surface. Together, the results show that functional DnaA-Hda interactions require a second interaction site within DnaA domain IV in addition to the AAA+ domain and suggest that these interactions are crucial for the formation of RIDA complexes that are active for DnaA-ATP hydrolysis.

DnaA Protein DNA-binding Domain Binds to Hda Protein to Promote Inter-AAA+ Domain Interaction Involved in Regulatory Inactivation of DnaA*

PubMed Central

Keyamura, Kenji; Katayama, Tsutomu

2011-01-01

Chromosomal replication is initiated from the replication origin oriC in Escherichia coli by the active ATP-bound form of DnaA protein. The regulatory inactivation of DnaA (RIDA) system, a complex of the ADP-bound Hda and the DNA-loaded replicase clamp, represses extra initiations by facilitating DnaA-bound ATP hydrolysis, yielding the inactive ADP-bound form of DnaA. However, the mechanisms involved in promoting the DnaA-Hda interaction have not been determined except for the involvement of an interaction between the AAA+ domains of the two. This study revealed that DnaA Leu-422 and Pro-423 residues within DnaA domain IV, including a typical DNA-binding HTH motif, are specifically required for RIDA-dependent ATP hydrolysis in vitro and that these residues support efficient interaction with the DNA-loaded clamp·Hda complex and with Hda in vitro. Consistently, substitutions of these residues caused accumulation of ATP-bound DnaA in vivo and oriC-dependent inhibition of cell growth. Leu-422 plays a more important role in these activities than Pro-423. By contrast, neither of these residues is crucial for DNA replication from oriC, although they are highly conserved in DnaA orthologues. Structural analysis of a DnaA·Hda complex model suggested that these residues make contact with residues in the vicinity of the Hda AAA+ sensor I that participates in formation of a nucleotide-interacting surface. Together, the results show that functional DnaA-Hda interactions require a second interaction site within DnaA domain IV in addition to the AAA+ domain and suggest that these interactions are crucial for the formation of RIDA complexes that are active for DnaA-ATP hydrolysis. PMID:21708944

Stability of the two-dimensional Fermi polaron

NASA Astrophysics Data System (ADS)

Griesemer, Marcel; Linden, Ulrich

2018-02-01

A system composed of an ideal gas of N fermions interacting with an impurity particle in two space dimensions is considered. The interaction between impurity and fermions is given in terms of two-body point interactions whose strength is determined by the two-body binding energy, which is a free parameter of the model. If the mass of the impurity is 1.225 times larger than the mass of a fermion, it is shown that the energy is bounded below uniformly in the number N of fermions. This result improves previous, N-dependent lower bounds, and it complements a recent, similar bound for the Fermi polaron in three space dimensions.

Gas turbine topping combustor

DOEpatents

Beer, Janos; Dowdy, Thomas E.; Bachovchin, Dennis M.

1997-01-01

A combustor for burning a mixture of fuel and air in a rich combustion zone, in which the fuel bound nitrogen in converted to molecular nitrogen. The fuel rich combustion is followed by lean combustion. The products of combustion from the lean combustion are rapidly quenched so as to convert the fuel bound nitrogen to molecular nitrogen without forming NOx. The combustor has an air radial swirler that directs the air radially inward while swirling it in the circumferential direction and a radial fuel swirler that directs the fuel radially outward while swirling it in the same circumferential direction, thereby promoting vigorous mixing of the fuel and air. The air inlet has a variable flow area that is responsive to variations in the heating value of the fuel, which may be a coal-derived fuel gas. A diverging passage in the combustor in front of a bluff body causes the fuel/air mixture to recirculate with the rich combustion zone.

Adaptive fuzzy prescribed performance control for MIMO nonlinear systems with unknown control direction and unknown dead-zone inputs.

PubMed

Shi, Wuxi; Luo, Rui; Li, Baoquan

2017-01-01

In this study, an adaptive fuzzy prescribed performance control approach is developed for a class of uncertain multi-input and multi-output (MIMO) nonlinear systems with unknown control direction and unknown dead-zone inputs. The properties of symmetric matrix are exploited to design adaptive fuzzy prescribed performance controller, and a Nussbaum-type function is incorporated in the controller to estimate the unknown control direction. This method has two prominent advantages: it does not require the priori knowledge of control direction and only three parameters need to be updated on-line for this MIMO systems. It is proved that all the signals in the resulting closed-loop system are bounded and that the tracking errors converge to a small residual set with the prescribed performance bounds. The effectiveness of the proposed approach is validated by simulation results. Copyright © 2016 ISA. Published by Elsevier Ltd. All rights reserved.

[The changes in contents and composition of phenolic acids during cell xylem growth in scots pine].

PubMed

Antonova, G F; Zheliznichenko, T V; Stasova, V V

2011-01-01

The contents and composition of alcohol soluble phenolic acids were studied during cell xylem growth in the course of wood annual increment formation in the stems of Scots pine. The cells of cambium zone, of two stages of expansion growth and the outset of secondary thickening zone (before lignification) were successively gathered from the stem segments of 25-old pine trees in the period of earlywood xylem formation with constant anatomical and histochemical control. The contents of free and bound forms of phenolic acids, isolated by 80% ethanol from tissues, as well as of their ethers and esters were calculated both per dry weight and per cell. The content and relation of the fractions and the composition of phenolic acid have been found to change significantly from cambium zone to the outset of tracheid secondary thickening. The character of the variations depends on a calculation method. According to the calculation per cell the amount of free and bound phenolic acids and in their composition of esters and especially ethers increased at the first step of expansion growth zone, decreased at the second one and rose again in the outset of secondary wall deposition. In dependence on the stage of cell development the pool of bound phenolic acids exceeded of free acid pool in 2-5 times. Sinapic and ferulic acids dominated in the composition of free hydroxycinnamic acids. The content and composition of hydroxycinnamic acids in ethers and esters depended on cell development phase. In cambium p-coumaric and sinapic acids were principal aglycons in ethers, at other stages these were sinapic and caffeic acids. The esters in cambium zone included essentially p-coumaric acid and at the other stages - sinapic and ferulic acids. At the first phase of growth benzoic acid was connected principally by ester bonds. The pool of these esters decreased from the first phase of growth to the outset of cell wall thickening and in proportion to this the level of free benzoic acid rose.

Development of weathering profile of a forest hillslope in clay-rich sedimentary system

NASA Astrophysics Data System (ADS)

Nicklas, R. W.; Kim, H.; Bishop, J. K.; Rempe, D. M.

2012-12-01

Hillslopes are an essential element to the understanding of landscape evolution, storm flow generation and biogeochemical processes. Since 2008, extensive studies of climate variables, vegetation, soil moisture, subsurface hydrology, and water chemistry have taken place at a small forested hillslope, "Rivendell", at the Angelo Coast Range Reserve located at the headwaters of the Eel River, California. Here we report on the signature of weathering processes through analysis of core and soil samples collected during well drilling campaigns. Core samples from multiple depths at four wells (at creek edge, mid-slope, up-slope, and ridge-top) were selected and include 1) soil; 2) unsaturated fractured/ weathered zone; 3) zone of seasonal water table fluctuation within weathered bedrock; and 4) chronically saturated fresh bedrock zone. We also include soil samples from a groundwater seep located at the toe of the slope. The mineralogy of these samples was identified using X-ray diffraction. Samples were analyzed for salt and Ca(Mg)CO3 concentrations, and cation exchange capacity using Milli-Q water and acetic acid extraction and BaCl2-NH4Cl treatments, respectively. To further quantify the mineral dissolution and secondary mineral precipitation, a sequential extraction of trace metals were conducted - 1) exchangeable using MgCl2; 2) bound to carbonates using NaOAc; 3) bound to Fe-Mn oxides using NH2OH HCl; and 4) bound to organic matters using H2O2 and HNO3. The total elemental contents were determined using HF-HNO3-HClO4 dissolution. The mineralogy of the fresh bedrock zone showed similar patterns throughout the site -for clay minerals, chlorite, illite, interstratified illite/smectite were dominant; K-feldspar dominated the primary minerals. Shallow (<30 cm) soils had kaolinite, and chlorite was absent in some samples. CaCO3 was also predominantly found in the fresh bedrock zone and progressively increased with depth. The depletion profile of major cations (Ca, Na, Mg, K, and Si) and trace metals (Fe, Mn and Al) show the mineral dissolution fronts. K-feldspar, chlorite and CaCO3 dissolution and secondary mineral precipitation are thus the major processes that are critical to the interpretation of groundwater chemistry.

The geology of the Inconsolable Range, east-central Sierra Nevada, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hathaway, G.M; Reed, W.E.

1993-04-01

Detailed mapping of the Inconsolable Range in the east-central Sierra Nevada reveals a structurally and lithologically complex region of multi-phase intrusions. Some plutons are compositionally-zoned [e.g., Inconsolable (100 Ma) and Lamarck (90 Ma)]; others may be the result of magma mixing. Intrusive borders vary from brittle to ductile and sharp to gradational, and are bounded by contact aureoles of varying metamorphic grade. A shear zone (Long Lake shear zone -- LLSZ) bounds the western margin of the Inconsolable Range for 8 km; this is truncated in the south by the Cretaceous Lamarck intrusive suite, and is tectonically overlain in themore » north by the Bishop Creek Pendant (Ordovician ). The LLSZ is a complex zone of interleaved septa of biotite schists, orthogneisses, aplitic screens, and calc-silicate gneisses approximately 500 to 800 m wide. Preliminary interpretation suggests that the LLSZ is the sheared remnant of a Triassic-Jurassic igneous terrane complete with metasedimentary pendants. Juxtaposition of greenschist facies meta-sedimentary rocks of the Chocolate Peak klippe over highly deformed amphibolite grade meta-igneous rocks of the LLSZ postdates movement along the LLSZ. Metamorphic grades suggest that deeper structural levels are exposed within the LLSZ near its southern terminus. Twenty plutonic lithologies have been mapped and informally named (e.g., Spotted biotite quartz diorite), including 3 compositionally-zoned plutons. Zonation within the Lamarck, Inconsolable, and Spotted intrusions are the result of multiple emplacement events into partially crystallized host plutons. Along the eastern border of the Lamarck intrusive suite field evidence indicates four separate intrusive events. The Inconsolable body is a compositionally-zoned biotite, clinopyroxene, quartz diorite with irregular granodiorite margins. The base of the Spotted intrusion appears to have been magmatically eroded by a pulse of the younger Lamarck intrusion.« less

GTP- and GDP-Dependent Rab27a Effectors in Pancreatic Beta-Cells.

PubMed

Yamaoka, Mami; Ishizaki, Toshimasa; Kimura, Toshihide

2015-01-01

Small guanosine triphosphatases (GTPases) participate in a wide variety of cellular functions including proliferation, differentiation, adhesion, and intracellular transport. Conventionally, only the guanosine 5'-triphosphate (GTP)-bound small GTPase interacts with effector proteins, and the resulting downstream signals control specific cellular functions. Therefore, the GTP-bound form is regarded as active, and the focus has been on searching for proteins that bind the GTP form to look for their effectors. The Rab family small GTPase Rab27a is highly expressed in some secretory cells and is involved in the control of membrane traffic. The present study reviews recent progress in our understanding of the roles of Rab27a and its effectors in pancreatic beta-cells. In the basal state, GTP-bound Rab27a controls insulin secretion at pre-exocytic stages via its GTP-dependent effectors. We previously identified novel guanosine 5'-diphosphate (GDP)-bound Rab27-interacting proteins. Interestingly, GDP-bound Rab27a controls endocytosis of the secretory membrane via its interaction with these proteins. We also demonstrated that the insulin secretagogue glucose converts Rab27a from its GTP- to GDP-bound forms. Thus, GTP- and GDP-bound Rab27a regulate pre-exocytic and endocytic stages in membrane traffic, respectively. Since the physiological importance of GDP-bound GTPases has been largely overlooked, we consider that the investigation of GDP-dependent effectors for other GTPases is necessary for further understanding of cellular function.

76 FR 15216 - Security Zones; Cruise Ships, Port of San Diego, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-21

...The Coast Guard is amending its regulations for Security Zones; Cruise Ships, Port of San Diego, California, by providing a common description of all security zones created by this section to encompass only navigable waters within a 100 yard radius around any cruise ship that is located within the San Diego port area landward of the sea buoys bounding the Port of San Diego. This final rule removes a reference to shore area that is no longer necessary to provide for the safety of the cruise ship, vessels, and users of the waterway. Entry into these security zones will be prohibited unless specifically authorized by the Captain of the Port (COTP) San Diego, or a COTP designated representative.

The effects of bound state motion on macromolecular diffusion

NASA Astrophysics Data System (ADS)

Hough, Loren; Stefferson, Michael; Norris, Samantha; Maguire, Laura; Vernerey, Franck; Betterton, Meredith

The diffusion of macromolecules is modified in crowded environments by both inert obstacles and interaction sites. Molecules are generally slowed in their movement inducing transient anomalous subdiffusion. Obstacles also modify the kinetics and equilibrium behavior of interaction between mobile proteins. In some biophysical contexts, bound molecules can still experience mobility, for example transcription factors sliding along DNA, membrane proteins with some entry and diffusion within lipid domains, or proteins that can enter into non-membrane bound compartments such as the nucleolus. We used lattice and continuum models to study the diffusive behavior of tracer particles which bind to obstacles and can diffuse within them. We show that binding significantly alters the motion of tracers. The type and degree of motion while bound is a key determinant of the tracer mobility. Our work has implications for protein-protein movement and interactions within living cells, including those involving intrinsically disordered proteins.

Hazardous Waste Cleanup: Stimpson Company Incorporated in Bayport, New York

EPA Pesticide Factsheets

The Stimpson property, which is about 21 acres in area, is bounded by undeveloped industrial-zone land to the west and the south, commercial and industrial property to the north, and Sylvan Avenue to the east.

Fast Atom Ionization in Strong Electromagnetic Radiation

NASA Astrophysics Data System (ADS)

Apostol, M.

2018-05-01

The Goeppert-Mayer and Kramers-Henneberger transformations are examined for bound charges placed in electromagnetic radiation in the non-relativistic approximation. The consistent inclusion of the interaction with the radiation field provides the time evolution of the wavefunction with both structural interaction (which ensures the bound state) and electromagnetic interaction. It is shown that in a short time after switching on the high-intensity radiation the bound charges are set free. In these conditions, a statistical criterion is used to estimate the rate of atom ionization. The results correspond to a sudden application of the electromagnetic interaction, in contrast with the well-known ionization probability obtained by quasi-classical tunneling through classically unavailable non-stationary states, or other equivalent methods, where the interaction is introduced adiabatically. For low-intensity radiation the charges oscillate and emit higher-order harmonics, the charge configuration is re-arranged and the process is resumed. Tunneling ionization may appear in these circumstances. Extension of the approach to other applications involving radiation-induced charge emission from bound states is discussed, like ionization of molecules, atomic clusters or proton emission from atomic nuclei. Also, results for a static electric field are included.

Structure and dynamics of protein waters revealed by radiolysis and mass spectrometry

PubMed Central

Gupta, Sayan; D’Mello, Rhijuta; Chance, Mark R.

2012-01-01

Water is critical for the structure, stability, and functions of macromolecules. Diffraction and NMR studies have revealed structure and dynamics of bound waters at atomic resolution. However, localizing the sites and measuring the dynamics of bound waters, particularly on timescales relevant to catalysis and macromolecular assembly, is quite challenging. Here we demonstrate two techniques: first, temperature-dependent radiolytic hydroxyl radical labeling with a mass spectrometry (MS)-based readout to identify sites of bulk and bound water interactions with surface and internal residue side chains, and second, H218O radiolytic exchange coupled MS to measure the millisecond dynamics of bound water interactions with various internal residue side chains. Through an application of the methods to cytochrome c and ubiquitin, we identify sites of water binding and measure the millisecond dynamics of bound waters in protein crevices. As these MS-based techniques are very sensitive and not protein size limited, they promise to provide unique insights into protein–water interactions and water dynamics for both small and large proteins and their complexes. PMID:22927377

Dynamic spin injection into a quantum well coupled to a spin-split bound state

NASA Astrophysics Data System (ADS)

Maslova, N. S.; Rozhansky, I. V.; Mantsevich, V. N.; Arseyev, P. I.; Averkiev, N. S.; Lähderanta, E.

2018-05-01

We present a theoretical analysis of dynamic spin injection due to spin-dependent tunneling between a quantum well (QW) and a bound state split in spin projection due to an exchange interaction or external magnetic field. We focus on the impact of Coulomb correlations at the bound state on spin polarization and sheet density kinetics of the charge carriers in the QW. The theoretical approach is based on kinetic equations for the electron occupation numbers taking into account high order correlation functions for the bound state electrons. It is shown that the on-site Coulomb repulsion leads to an enhanced dynamic spin polarization of the electrons in the QW and a delay in the carriers tunneling into the bound state. The interplay of these two effects leads to nontrivial dependence of the spin polarization degree, which can be probed experimentally using time-resolved photoluminescence experiments. It is demonstrated that the influence of the Coulomb interactions can be controlled by adjusting the relaxation rates. These findings open a new way of studying the Hubbard-like electron interactions experimentally.

The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.).

PubMed

Verwaaijen, Bart; Wibberg, Daniel; Kröber, Magdalena; Winkler, Anika; Zrenner, Rita; Bednarz, Hanna; Niehaus, Karsten; Grosch, Rita; Pühler, Alfred; Schlüter, Andreas

2017-01-01

The necrotrophic pathogen Rhizoctonia solani is one of the most economically important soil-borne pathogens of crop plants. Isolates of R. solani AG1-IB are the major pathogens responsible for bottom-rot of lettuce (Lactuca sativa L.) and are also responsible for diseases in other plant species. Currently, there is lack of information regarding the molecular responses in R. solani during the pathogenic interaction between the necrotrophic soil-borne pathogen and its host plant. The genome of R. solani AG1-IB (isolate 7/3/14) was recently established to obtain insights into its putative pathogenicity determinants. In this study, the transcriptional activity of R. solani AG1-IB was followed during the course of its pathogenic interaction with the host plant lettuce under controlled conditions. Based on visual observations, three distinct pathogen-host interaction zones on lettuce leaves were defined which covered different phases of disease progression on tissue inoculated with the AG1-IB (isolate 7/3/14). The zones were defined as: Zone 1-symptomless, Zone 2-light brown discoloration, and Zone 3-dark brown, necrotic lesions. Differences in R. solani hyphae structure in these three zones were investigated by microscopic observation. Transcriptional activity within these three interaction zones was used to represent the course of R. solani disease progression applying high-throughput RNA sequencing (RNA-Seq) analysis of samples collected from each Zone. The resulting three transcriptome data sets were analyzed for their highest expressed genes and for differentially transcribed genes between the respective interaction zones. Among the highest expressed genes was a group of not previously described genes which were transcribed exclusively during early stages of interaction, in Zones 1 and 2. Previously described importance of up-regulation in R. solani agglutinin genes during disease progression could be further confirmed; here, the corresponding genes exhibited extremely high transcription levels. Most differentially higher expressed transcripts were found within Zone 2. In Zone 3, the zone with the strongest degree of interaction, gene transcripts indicative of apoptotic activity were highly abundant. The transcriptome data presented in this work support previous models of the disease and interaction cycle of R. solani and lettuce and may influence effective techniques for control of this pathogen.

Conservation laws, bilinear forms and solitons for a fifth-order nonlinear Schrödinger equation for the attosecond pulses in an optical fiber

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chai, Jun; Tian, Bo, E-mail: tian_bupt@163.com; Zhen, Hui-Ling

Under investigation in this paper is a fifth-order nonlinear Schrödinger equation, which describes the propagation of attosecond pulses in an optical fiber. Based on the Lax pair, infinitely-many conservation laws are derived. With the aid of auxiliary functions, bilinear forms, one-, two- and three-soliton solutions in analytic forms are generated via the Hirota method and symbolic computation. Soliton velocity varies linearly with the coefficients of the high-order terms. Head-on interaction between the bidirectional two solitons and overtaking interaction between the unidirectional two solitons as well as the bound state are depicted. For the interactions among the three solitons, two head-onmore » and one overtaking interactions, three overtaking interactions, an interaction between a bound state and a single soliton and the bound state are displayed. Graphical analysis shows that the interactions between the two solitons are elastic, and interactions among the three solitons are pairwise elastic. Stability analysis yields the modulation instability condition for the soliton solutions.« less

Structural insight into GRIP1-PDZ6 in Alzheimer's disease: study from protein expression data to molecular dynamics simulations.

PubMed

Chatterjee, Paulami; Roy, Debjani

2017-08-01

Protein-protein interaction domain, PDZ, plays a critical role in efficient synaptic transmission in brain. Dysfunction of synaptic transmission is thought to be the underlying basis of many neuropsychiatric and neurodegenerative disorders including Alzheimer's disease (AD). In this study, Glutamate Receptor Interacting Protein1 (GRIP1) was identified as one of the most important differentially expressed, topologically significant proteins in the protein-protein interaction network. To date, very few studies have analyzed the detailed structural basis of PDZ-mediated protein interaction of GRIP1. In order to gain better understanding of structural and dynamic basis of these interactions, we employed molecular dynamics (MD) simulations of GRIP1-PDZ6 dimer bound with Liprin-alpha and GRIP1-PDZ6 dimer alone each with 100 ns simulations. The analyses of MD simulations of Liprin-alpha bound GRIP1-PDZ6 dimer show considerable conformational differences than that of peptide-free dimer in terms of SASA, hydrogen bonding patterns, and along principal component 1 (PC1). Our study also furnishes insight into the structural attunement of the PDZ6 domains of Liprin-alpha bound GRIP1 that is attributed by significant shift of the Liprin-alpha recognition helix in the simulated peptide-bound dimer compared to the crystal structure and simulated peptide-free dimer. It is evident that PDZ6 domains of peptide-bound dimer show differential movements along PC1 than that of peptide-free dimers. Thus, Liprin-alpha also serves an important role in conferring conformational changes along the dimeric interface of the peptide-bound dimer. Results reported here provide information that may lead to novel therapeutic approaches in AD.

Fluid geochemistry of Yucca Mountain and vicinity

USGS Publications Warehouse

Marshall, Brian D.; Moscati, Richard J.; Patterson, Gary L.; Stuckless, John S.

2012-01-01

Yucca Mountain, a site in southwest Nevada, has been proposed for a deep underground radioactive waste repository. An extensive database of geochemical and isotopic characteristics has been established for pore waters and gases from the unsaturated zone, perched water, and saturated zone waters in the Yucca Mountain area. The development of this database has been driven by diverse needs of the Yucca Mountain Project, especially those aspects of the project involving process modeling and performance assessment. Water and gas chemistries influence the sorption behavior of radionuclides and the solubility of the radionuclide compounds that form. The chemistry of waters that may infiltrate the proposed repository will be determined in part by that of water present in the unsaturated zone above the proposed repository horizon, whereas pore-water compositions beneath the repository horizon will influence the sorption behavior of the radionuclides transported toward the water table. However, more relevant to the discussion in this chapter, development and testing of conceptual flow and transport models for the Yucca Mountain hydrologic system are strengthened through the incorporation of natural environmental tracer data into the process. Chemical and isotopic data are used to establish bounds on key hydrologic parameters and to provide corroborative evidence for model assumptions and predictions. Examples of specific issues addressed by these data include spatial and temporal variability in net fluxes, the role of faults in controlling flow paths, fracture-matrix interactions, the age and origin of perched water, and the distribution of water traveltimes.

Index theorem for the flat Andreev bound states at a dirty surface of a nodal superconductor

NASA Astrophysics Data System (ADS)

Ikegaya, Satoshi; Asano, Yasuhiro

2018-03-01

We discuss the stability of at-band Andreev bound states appearing at a surface of a nodal unconventional superconductor. In the clean limit, the existence of the surface bound states is topologically characterized by a momentum-dependent topological invariant: one-dimensional winding number de ned in the restricted Brillouin zone. Thus, such topological invariant is ill-defined in the presence of potential disorder which is inevitable in experiments. By paying attention to chiral symmetry of the Hamiltonian, we provide an alternative topological index N ZES that predicts the number of Andreev bound states at a dirty surface of an unconventional superconductor. Moreover, we demonstrate that the zero-bias differential conductance in a normal metal/unconventional superconductor junction is quantized at (4e 2 /h)|N ZES | in the limit of strong impurity scattering in the normal metal.

STXM/C 1s-NEXAFS study of Eu(III) and Uranyl humic acid aggregates at different pH

NASA Astrophysics Data System (ADS)

Plaschke, M.; Rothe, J.; Denecke, M. A.; Geckeis, H.

2010-04-01

Humic acids (HA) are chemically heterogeneous and structurally ill-defined biopolymers which are able to bind traces of actinides or lanthanides. Due to their dimensions in the colloidal size range they may affect transport of these elements in aquatic systems. Eu(III)- and UO22+-HA aggregates have been investigated by Scanning Transmission X-ray Microscopy (STXM) and C 1s-NEXAFS under systematic variation of pH. In the Eu(III)- and UO22+-HA systems aggregate morphologies at near neutral pH were similar to those observed in previous studies: optically dense zones (high absorption at the carbon K-edge) are embedded in a matrix of less dense material. C 1s-NEXAFS signatures observed in the different zones, i.e., the intensity of the characteristic complexation feature previously experimentally described and recently theoretically characterized, strongly depends on sample pH. In the alkaline regime (pH 9) with added carbonate, co-precipitation of Eu(III)-carbonate (or ternary carbonate/(oxo)hydroxide complexes) with the Eu(III)-HA majority fraction is observed but Eu(III) binding to HA over carbonate in the dense zones seems to be favoured. The UO22+-HA system exhibits in alkaline solution more compact morphologies combined with a strong metal ion complexation effect in the NEXAFS. Eu(III) and UO22+ polyacrylic acid (PAA) aggregates used as HA model systems show similar spectral trends; these aggregates exhibit highly branched morphologies without segregation into zones with different NEXAFS signatures. The chemical environment such as pH or the type of metal cation strongly influences both HA aggregate morphologies and NEXAFS spectral signatures. These can, in turn, be used as indicators of the strength of lanthanide or actinide ion bound HA interaction.

Monomeric α-Synuclein Binds Congo Red Micelles in a Disordered Manner

PubMed Central

2011-01-01

The histological dye Congo Red (CR) previously has been shown to inhibit α-synuclein (aS) fibrillation, but the mode of this inhibition remained unclear. Because of favorable exchange kinetics, interaction between CR and aS lends itself to a detailed nuclear magnetic resonance study, and relaxation dispersion measurements yield the bound fraction and time scales for the interaction of aS with CR. We find that at pH 6, CR exists as a micelle, and at a CR:aS molar ratio of ∼1, only a small fraction of aS (∼2%) is bound to these micelles. Rapid exchange (kex ∼ 3000 s–1) between the free and CR-bound states broadens and strongly attenuates resonances of aS by two processes: a magnetic field-dependent contribution, caused by the chemical shift difference between the two states, and a nearly field-independent contribution caused by slower tumbling of aS bound to the CR micelle. The salt dependence of the interaction suggests a predominantly electrostatic mechanism for the 60 N-terminal residues, while the weaker interaction between residues 61–100 and CR is mostly hydrophobic. Chemical shift and transferred NOE data indicate that aS becomes slightly more helical but remains largely disordered when bound to CR. Results indicate that inhibition of fibril formation does not result from binding of CR to free aS and, therefore, must result from interaction of aS fibrils or protofibrils with CR micelles. PMID:22242826

Monomeric α-synuclein binds Congo Red micelles in a disordered manner.

PubMed

Maltsev, Alexander S; Grishaev, Alexander; Bax, Ad

2012-01-17

The histological dye Congo Red (CR) previously has been shown to inhibit α-synuclein (aS) fibrillation, but the mode of this inhibition remained unclear. Because of favorable exchange kinetics, interaction between CR and aS lends itself to a detailed nuclear magnetic resonance study, and relaxation dispersion measurements yield the bound fraction and time scales for the interaction of aS with CR. We find that at pH 6, CR exists as a micelle, and at a CR:aS molar ratio of ~1, only a small fraction of aS (~2%) is bound to these micelles. Rapid exchange (k(ex) ~ 3000 s(-1)) between the free and CR-bound states broadens and strongly attenuates resonances of aS by two processes: a magnetic field-dependent contribution, caused by the chemical shift difference between the two states, and a nearly field-independent contribution caused by slower tumbling of aS bound to the CR micelle. The salt dependence of the interaction suggests a predominantly electrostatic mechanism for the 60 N-terminal residues, while the weaker interaction between residues 61-100 and CR is mostly hydrophobic. Chemical shift and transferred NOE data indicate that aS becomes slightly more helical but remains largely disordered when bound to CR. Results indicate that inhibition of fibril formation does not result from binding of CR to free aS and, therefore, must result from interaction of aS fibrils or protofibrils with CR micelles.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maltsev, Alexander S.; Grishaev, Alexander; Bax, Ad

The histological dye Congo Red (CR) previously has been shown to inhibit {alpha}-synuclein (aS) fibrillation, but the mode of this inhibition remained unclear. Because of favorable exchange kinetics, interaction between CR and aS lends itself to a detailed nuclear magnetic resonance study, and relaxation dispersion measurements yield the bound fraction and time scales for the interaction of aS with CR. We find that at pH 6, CR exists as a micelle, and at a CR:aS molar ratio of {approx}1, only a small fraction of aS ({approx}2%) is bound to these micelles. Rapid exchange (k{sub ex} {approx} 3000 s{sup -1}) betweenmore » the free and CR-bound states broadens and strongly attenuates resonances of aS by two processes: a magnetic field-dependent contribution, caused by the chemical shift difference between the two states, and a nearly field-independent contribution caused by slower tumbling of aS bound to the CR micelle. The salt dependence of the interaction suggests a predominantly electrostatic mechanism for the 60 N-terminal residues, while the weaker interaction between residues 61-100 and CR is mostly hydrophobic. Chemical shift and transferred NOE data indicate that aS becomes slightly more helical but remains largely disordered when bound to CR. Results indicate that inhibition of fibril formation does not result from binding of CR to free aS and, therefore, must result from interaction of aS fibrils or protofibrils with CR micelles.« less

A New Look at Spreading in Iceland: Propagating Rifts, Migrating Transform Faults, and Microplate Tectonics

NASA Astrophysics Data System (ADS)

Karson, J.; Horst, A. J.; Nanfito, A.

2011-12-01

Iceland has long been used as an analog for studies of seafloor spreading. Despite its thick (~25 km) oceanic crust and subaerial lavas, many features associated with accretion along mid-ocean ridge spreading centers, and the processes that generate them, are well represented in the actively spreading Neovolcanic Zone and deeply glaciated Tertiary crust that flanks it. Integrated results of structural and geodetic studies show that the plate boundary zone on Iceland is a complex array of linked structures bounding major crustal blocks or microplates, similar to oceanic microplates. Major rift zones propagate N and S from the hotspot centered beneath the Vatnajökull icecap in SE central Iceland. The southern propagator has extended southward beyond the South Iceland Seismic Zone transform fault to the Westman Islands, resulting in abandonment of the Eastern Rift Zone. Continued propagation may cause abandonment of the Reykjanes Ridge. The northern propagator is linked to the southern end of the receding Kolbeinsey Ridge to the north. The NNW-trending Kerlingar Pseudo-fault bounds the propagator system to the E. The Tjörnes Transform Fault links the propagator tip to the Kolbeinsey Ridge and appears to be migrating northward in incremental steps, leaving a swath of deformed crustal blocks in its wake. Block rotations, concentrated mainly to the west of the propagators, are clockwise to the N of the hotspot and counter-clockwise to the S, possibly resulting in a component of NS divergence across EW-oriented rift zones. These rotations may help accommodate adjustments of the plate boundary zone to the relative movements of the N American and Eurasian plates. The rotated crustal blocks are composed of highly anisotropic crust with rift-parallel internal fabric generated by spreading processes. Block rotations result in reactivation of spreading-related faults as major rift-parallel, strike-slip faults. Structural details found in Iceland can help provide information that is difficult or impossible to obtain in propagating systems of the deep seafloor.

3D Model of the Tuscarora Geothermal Area

DOE Data Explorer

Faulds, James E.

2013-12-31

The Tuscarora geothermal system sits within a ~15 km wide left-step in a major west-dipping range-bounding normal fault system. The step over is defined by the Independence Mountains fault zone and the Bull Runs Mountains fault zone which overlap along strike. Strain is transferred between these major fault segments via and array of northerly striking normal faults with offsets of 10s to 100s of meters and strike lengths of less than 5 km. These faults within the step over are one to two orders of magnitude smaller than the range-bounding fault zones between which they reside. Faults within the broad step define an anticlinal accommodation zone wherein east-dipping faults mainly occupy western half of the accommodation zone and west-dipping faults lie in the eastern half of the accommodation zone. The 3D model of Tuscarora encompasses 70 small-offset normal faults that define the accommodation zone and a portion of the Independence Mountains fault zone, which dips beneath the geothermal field. The geothermal system resides in the axial part of the accommodation, straddling the two fault dip domains. The Tuscarora 3D geologic model consists of 10 stratigraphic units. Unconsolidated Quaternary alluvium has eroded down into bedrock units, the youngest and stratigraphically highest bedrock units are middle Miocene rhyolite and dacite flows regionally correlated with the Jarbidge Rhyolite and modeled with uniform cumulative thickness of ~350 m. Underlying these lava flows are Eocene volcanic rocks of the Big Cottonwood Canyon caldera. These units are modeled as intracaldera deposits, including domes, flows, and thick ash deposits that change in thickness and locally pinch out. The Paleozoic basement of consists metasedimenary and metavolcanic rocks, dominated by argillite, siltstone, limestone, quartzite, and metabasalt of the Schoonover and Snow Canyon Formations. Paleozoic formations are lumped in a single basement unit in the model. Fault blocks in the eastern portion of the model are tilted 5-30 degrees toward the Independence Mountains fault zone. Fault blocks in the western portion of the model are tilted toward steeply east-dipping normal faults. These opposing fault block dips define a shallow extensional anticline. Geothermal production is from 4 closely-spaced wells, that exploit a west-dipping, NNE-striking fault zone near the axial part of the accommodation zone.

[Changes of lastids in virus-infected cells of the attraction-zone from Sarracenia purpurea L].

PubMed

Barckhaus, R H; Weinert, H

1975-01-01

Viruslike particles 300-350 nm long and 70 nm in diameter were found in ultrathin sections of attraction-zone from Sarracenia purpurea. Epidermal- and mesophyll cells contained the bacilliform particles. The membrane-bound particles-most virions occured within ER-like membranes-consisted of an outer coat 70-90 A thick, an inner membrane and an axial core. The plastids of infected cells in which virus particles were localized show morphologicals changes of the organells.

Velocity Memory Effect for polarized gravitational waves

NASA Astrophysics Data System (ADS)

Zhang, P.-M.; Duval, C.; Gibbons, G. W.; Horvathy, P. A.

2018-05-01

Circularly polarized gravitational sandwich waves exhibit, as do their linearly polarized counterparts, the Velocity Memory Effect: freely falling test particles in the flat after-zone fly apart along straight lines with constant velocity. In the inside zone their trajectories combine oscillatory and rotational motions in a complicated way. For circularly polarized periodic gravitational waves some trajectories remain bounded, while others spiral outward. These waves admit an additional "screw" isometry beyond the usual five. The consequences of this extra symmetry are explored.

Definition Of Touch-Sensitive Zones For Graphical Displays

NASA Technical Reports Server (NTRS)

Monroe, Burt L., III; Jones, Denise R.

1988-01-01

Touch zones defined simply by touching, while editing done automatically. Development of touch-screen interactive computing system, tedious task. Interactive Editor for Definition of Touch-Sensitive Zones computer program increases efficiency of human/machine communications by enabling user to define each zone interactively, minimizing redundancy in programming and eliminating need for manual computation of boundaries of touch areas. Information produced during editing process written to data file, to which access gained when needed by application program.

Magma storage in a strike-slip caldera

PubMed Central

Saxby, J.; Gottsmann, J.; Cashman, K.; Gutiérrez, E.

2016-01-01

Silicic calderas form during explosive volcanic eruptions when magma withdrawal triggers collapse along bounding faults. The nature of specific interactions between magmatism and tectonism in caldera-forming systems is, however, unclear. Regional stress patterns may control the location and geometry of magma reservoirs, which in turn may control the spatial and temporal development of faults. Here we provide new insight into strike-slip volcano-tectonic relations by analysing Bouguer gravity data from Ilopango caldera, El Salvador, which has a long history of catastrophic explosive eruptions. The observed low gravity beneath the caldera is aligned along the principal horizontal stress orientations of the El Salvador Fault Zone. Data inversion shows that the causative low-density structure extends to ca. 6 km depth, which we interpret as a shallow plumbing system comprising a fractured hydrothermal reservoir overlying a magmatic reservoir with vol% exsolved vapour. Fault-controlled localization of magma constrains potential vent locations for future eruptions. PMID:27447932

Magma storage in a strike-slip caldera.

PubMed

Saxby, J; Gottsmann, J; Cashman, K; Gutiérrez, E

2016-07-22

Silicic calderas form during explosive volcanic eruptions when magma withdrawal triggers collapse along bounding faults. The nature of specific interactions between magmatism and tectonism in caldera-forming systems is, however, unclear. Regional stress patterns may control the location and geometry of magma reservoirs, which in turn may control the spatial and temporal development of faults. Here we provide new insight into strike-slip volcano-tectonic relations by analysing Bouguer gravity data from Ilopango caldera, El Salvador, which has a long history of catastrophic explosive eruptions. The observed low gravity beneath the caldera is aligned along the principal horizontal stress orientations of the El Salvador Fault Zone. Data inversion shows that the causative low-density structure extends to ca. 6 km depth, which we interpret as a shallow plumbing system comprising a fractured hydrothermal reservoir overlying a magmatic reservoir with vol% exsolved vapour. Fault-controlled localization of magma constrains potential vent locations for future eruptions.

Thermal dark matter co-annihilating with a strongly interacting scalar

NASA Astrophysics Data System (ADS)

Biondini, S.; Laine, M.

2018-04-01

Recently many investigations have considered Majorana dark matter co-annihilating with bound states formed by a strongly interacting scalar field. However only the gluon radiation contribution to bound state formation and dissociation, which at high temperatures is subleading to soft 2 → 2 scatterings, has been included. Making use of a non-relativistic effective theory framework and solving a plasma-modified Schrödinger equation, we address the effect of soft 2 → 2 scatterings as well as the thermal dissociation of bound states. We argue that the mass splitting between the Majorana and scalar field has in general both a lower and an upper bound, and that the dark matter mass scale can be pushed at least up to 5…6TeV.

Correlation Decay in Fermionic Lattice Systems with Power-Law Interactions at Nonzero Temperature

NASA Astrophysics Data System (ADS)

Hernández-Santana, Senaida; Gogolin, Christian; Cirac, J. Ignacio; Acín, Antonio

2017-09-01

We study correlations in fermionic lattice systems with long-range interactions in thermal equilibrium. We prove a bound on the correlation decay between anticommuting operators and generalize a long-range Lieb-Robinson-type bound. Our results show that in these systems of spatial dimension D with, not necessarily translation invariant, two-site interactions decaying algebraically with the distance with an exponent α ≥2 D , correlations between such operators decay at least algebraically to 0 with an exponent arbitrarily close to α at any nonzero temperature. Our bound is asymptotically tight, which we demonstrate by a high temperature expansion and by numerically analyzing density-density correlations in the one-dimensional quadratic (free, exactly solvable) Kitaev chain with long-range pairing.

Subalpine forests

Treesearch

C.I. Millar; P.W. Rundel

2016-01-01

The subalpine forests of California comprise the highest elevation ecosystems that are dominated by upright trees. They are defined as a zone influenced primarily by abiotic controls, including persistent snowpack, desiccating winds, acute and chronic extreme temperatures, soil moisture and evapotranspirative stresses, and short growing seasons. Bounded at the...

Spin excitations used to probe the nature of exchange coupling in the magnetically ordered ground state of Pr 0.5 Ca 0.5 MnO 3

DOE PAGES

Ewings, R. A.; Perring, T. G.; Sikora, O.; ...

2016-07-06

We have used time-of-flight inelastic neutron scattering to measure the spin wave spectrum of the canonical half-doped manganite Pr 0.5Ca 0.5MnO 3 in its magnetic and orbitally ordered phase. Comparison of the data, which cover multiple Brillouin zones and the entire energy range of the excitations, with several different models shows that only the CE-type ordered state provides an adequate description of the magnetic ground state, provided interactions beyond nearest neighbor are included. We are able to rule out a ground state in which there exist pairs of dimerized spins which interact only with their nearest neighbors. The Zener polaronmore » ground state, which comprises strongly bound magnetic dimers, can be ruled out on the basis of gross features of the observed spin wave spectrum. A model with weaker dimerization reproduces the observed dispersion but can be ruled out on the basis of subtle discrepancies between the calculated and observed structure factors at certain positions in reciprocal space. Adding further neighbor interactions results in almost no dimerization, i.e. interpolating back to the CE model. These results are consistent with theoretical analysis of the degenerate double exchange model for half-doping.« less

Deconstructing the DGAT1 enzyme: membrane interactions at substrate binding sites.

PubMed

Lopes, Jose L S; Beltramini, Leila M; Wallace, Bonnie A; Araujo, Ana P U

2015-01-01

Diacylglycerol acyltransferase 1 (DGAT1) is a key enzyme in the triacylglyceride synthesis pathway. Bovine DGAT1 is an endoplasmic reticulum membrane-bound protein associated with the regulation of fat content in milk and meat. The aim of this study was to evaluate the interaction of DGAT1 peptides corresponding to putative substrate binding sites with different types of model membranes. Whilst these peptides are predicted to be located in an extramembranous loop of the membrane-bound protein, their hydrophobic substrates are membrane-bound molecules. In this study, peptides corresponding to the binding sites of the two substrates involved in the reaction were examined in the presence of model membranes in order to probe potential interactions between them that might influence the subsequent binding of the substrates. Whilst the conformation of one of the peptides changed upon binding several types of micelles regardless of their surface charge, suggesting binding to hydrophobic domains, the other peptide bound strongly to negatively-charged model membranes. This binding was accompanied by a change in conformation, and produced leakage of the liposome-entrapped dye calcein. The different hydrophobic and electrostatic interactions observed suggest the peptides may be involved in the interactions of the enzyme with membrane surfaces, facilitating access of the catalytic histidine to the triacylglycerol substrates.

Robust cooperation of connected vehicle systems with eigenvalue-bounded interaction topologies in the presence of uncertain dynamics

NASA Astrophysics Data System (ADS)

Li, Keqiang; Gao, Feng; Li, Shengbo Eben; Zheng, Yang; Gao, Hongbo

2017-12-01

This study presents a distributed H-infinity control method for uncertain platoons with dimensionally and structurally unknown interaction topologies provided that the associated topological eigenvalues are bounded by a predesigned range.With an inverse model to compensate for nonlinear powertrain dynamics, vehicles in a platoon are modeled by third-order uncertain systems with bounded disturbances. On the basis of the eigenvalue decomposition of topological matrices, we convert the platoon system to a norm-bounded uncertain part and a diagonally structured certain part by applying linear transformation. We then use a common Lyapunov method to design a distributed H-infinity controller. Numerically, two linear matrix inequalities corresponding to the minimum and maximum eigenvalues should be solved. The resulting controller can tolerate interaction topologies with eigenvalues located in a certain range. The proposed method can also ensure robustness performance and disturbance attenuation ability for the closed-loop platoon system. Hardware-in-the-loop tests are performed to validate the effectiveness of our method.

Interaction between water-soluble rhodium complex RhCl(CO)(TPPTS)₂ and surfactants probed by spectroscopic methods.

PubMed

Zhou, Li-Mei; Guo, Cai-Hong; Fu, Hai-Yan; Jiang, Xiao-Hui; Chen, Hua; Li, Rui-Xiang; Li, Xian-Jun

2012-07-01

The interactions of rhodium complex RhCl(CO)(TPPTS)(2) [TPPTS=P(m-C(6)H(4)SO(3)Na)(3)] with cationic, nonionic, and anionic surfactants have been investigated by UV-vis, fluorescence and (1)H NMR measurements. The presence of four different species of RhCl(CO)(TPPTS)(2) in cationic cetyltrimethylammonium (CTAB) solution has been demonstrated: free rhodium complex, rhodium complex bound to CTAB monomer, rhodium complex bound to CTAB premicelles, rhodium complex bound to CTAB micelles. The spectroscopy data show that RhCl(CO)(TPPTS)(2) can adsorb on the interface of cationic CTAB micelles by strong electrostatic attraction, weakly bind to the nonionic polyoxyethylene (20) sorbitan monolaurate (Tween 20) micelles by hydrophobic interaction, and does not interact with anion sodium dodecyl sulfate (SDS) micelles due to the strong electrostatic repulsion. Copyright © 2012 Elsevier B.V. All rights reserved.

Adaptive Fuzzy Control for Nonstrict Feedback Systems With Unmodeled Dynamics and Fuzzy Dead Zone via Output Feedback.

PubMed

Wang, Lijie; Li, Hongyi; Zhou, Qi; Lu, Renquan

2017-09-01

This paper investigates the problem of observer-based adaptive fuzzy control for a category of nonstrict feedback systems subject to both unmodeled dynamics and fuzzy dead zone. Through constructing a fuzzy state observer and introducing a center of gravity method, unmeasurable states are estimated and the fuzzy dead zone is defuzzified, respectively. By employing fuzzy logic systems to identify the unknown functions. And combining small-gain approach with adaptive backstepping control technique, a novel adaptive fuzzy output feedback control strategy is developed, which ensures that all signals involved are semi-globally uniformly bounded. Simulation results are given to demonstrate the effectiveness of the presented method.

Fluoride-Mediated Capture of a Noncovalent Bound State of a Reversible Covalent Enzyme Inhibitor: X-ray Crystallographic Analysis of an Exceptionally Potent [alpha]-Ketoheterocycle Inhibitor of Fatty Acid Amide Hydrolase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mileni, Mauro; Garfunkle, Joie; Ezzili, Cyrine

2011-11-02

Two cocrystal X-ray structures of the exceptionally potent {alpha}-ketoheterocycle inhibitor 1 (K{sub i} = 290 pM) bound to a humanized variant of rat fatty acid amide hydrolase (FAAH) are disclosed, representing noncovalently and covalently bound states of the same inhibitor with the enzyme. Key to securing the structure of the noncovalently bound state of the inhibitor was the inclusion of fluoride ion in the crystallization conditions that is proposed to bind the oxyanion hole precluding inhibitor covalent adduct formation with stabilization of the tetrahedral hemiketal. This permitted the opportunity to detect important noncovalent interactions stabilizing the binding of the inhibitormore » within the FAAH active site independent of the covalent reaction. Remarkably, noncovalently bound 1 in the presence of fluoride appears to capture the active site in the same 'in action' state with the three catalytic residues Ser241-Ser217-Lys142 occupying essentially identical positions observed in the covalently bound structure of 1, suggesting that this technique of introducing fluoride may have important applications in structural studies beyond inhibiting substrate or inhibitor oxyanion hole binding. Key insights to emerge from the studies include the observations that noncovalently bound 1 binds in its ketone (not gem diol) form, that the terminal phenyl group in the acyl side chain of the inhibitor serves as the key anchoring interaction overriding the intricate polar interactions in the cytosolic port, and that the role of the central activating heterocycle is dominated by its intrinsic electron-withdrawing properties. These two structures are also briefly compared with five X-ray structures of {alpha}-ketoheterocycle-based inhibitors bound to FAAH recently disclosed.« less

Effects of soft interactions and bound mobility on diffusion in crowded environments: a model of sticky and slippery obstacles

NASA Astrophysics Data System (ADS)

Stefferson, Michael W.; Norris, Samantha L.; Vernerey, Franck J.; Betterton, Meredith D.; E Hough, Loren

2017-08-01

Crowded environments modify the diffusion of macromolecules, generally slowing their movement and inducing transient anomalous subdiffusion. The presence of obstacles also modifies the kinetics and equilibrium behavior of tracers. While previous theoretical studies of particle diffusion have typically assumed either impenetrable obstacles or binding interactions that immobilize the particle, in many cellular contexts bound particles remain mobile. Examples include membrane proteins or lipids with some entry and diffusion within lipid domains and proteins that can enter into membraneless organelles or compartments such as the nucleolus. Using a lattice model, we studied the diffusive movement of tracer particles which bind to soft obstacles, allowing tracers and obstacles to occupy the same lattice site. For sticky obstacles, bound tracer particles are immobile, while for slippery obstacles, bound tracers can hop without penalty to adjacent obstacles. In both models, binding significantly alters tracer motion. The type and degree of motion while bound is a key determinant of the tracer mobility: slippery obstacles can allow nearly unhindered diffusion, even at high obstacle filling fraction. To mimic compartmentalization in a cell, we examined how obstacle size and a range of bound diffusion coefficients affect tracer dynamics. The behavior of the model is similar in two and three spatial dimensions. Our work has implications for protein movement and interactions within cells.

Approximation method for a spherical bound system in the quantum plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mehramiz, A.; Sobhanian, S.; Mahmoodi, J.

2010-08-15

A system of quantum hydrodynamic equations has been used for investigating the dielectric tensor and dispersion equation of a semiconductor as a quantum magnetized plasma. Dispersion relations and their modifications due to quantum effects are derived for both longitudinal and transverse waves. The number of states and energy levels are analytically estimated for a spherical bound system embedded in a semiconductor quantum plasma. The results show that longitudinal waves decay rapidly and do not interact with the spherical bound system. The energy shifts caused by the spin-orbit interaction and the Zeeman effect are calculated.

The Panama North Andes Plate Bounday Zone from Interpreted Radar Images, Geologic Mapping and Geophysical Anomalies

NASA Astrophysics Data System (ADS)

Hernandez, O.; Alexander, G. C.; Garzon, F.

2013-05-01

Satellite geodetics shows the existence of the rigid Panama microplate converging on west to east with The North Andean block. Seismic studies indicate that this plate boundary zone has compressive east-west stresses. Interpretation from magnetic and gravity data suggest that the thickness of the sedimentary sequence of The Atrato basin, reaches 10.5 km and that the Mande magmatic arc is a tectonic pillar, bounded by faults. The interpretation of seismic lines shows the basement of the Urabá Basin is affected by normal faults that limit blocks sunk and raised, a sedimentary sequence that is wedged against the Mande magmatic arc and becomes thicker towards the east. It also shows a thrust fault that connects Neogene sediments of Sinu fold belt with the Urabá Basin. The collision of the Panama arc with the Western Cordillera leads to the existence of a low-angle subduction zone inclined to the east involving the partition of the oceanic plate, drawing up of a trench and subducting plate bending. Before the Panama arc collision with the Western Cordillera, granitic intrusion had occurred that gave rise to the Mande magmatic arc, causing bending and rise of the oceanic crust. This effort generated tensional bending at the top of the crust that led to the formation of raised and sunken blocks bounded by normal faults, within which lies the tectonic pillar which forms the Mande magmatic arc. Upon the occurrence of the collision, it was launched the end of the connection between the Pacific Ocean and Caribbean Sea and the formation of the Uraba forearc basins and the Atrato basin. Panama - North Andes Plate boundary Zone 2d Modeling of the Panama - North Andes Plate Bounday Zone

A viscoplastic shear-zone model for deep (15-50 km) slow-slip events at plate convergent margins

NASA Astrophysics Data System (ADS)

Yin, An; Xie, Zhoumin; Meng, Lingsen

2018-06-01

A key issue in understanding the physics of deep (15-50 km) slow-slip events (D-SSE) at plate convergent margins is how their initially unstable motion becomes stabilized. Here we address this issue by quantifying a rate-strengthening mechanism using a viscoplastic shear-zone model inspired by recent advances in field observations and laboratory experiments. The well-established segmentation of slip modes in the downdip direction of a subduction shear zone allows discretization of an interseismic forearc system into the (1) frontal segment bounded by an interseismically locked megathrust, (2) middle segment bounded by episodically locked and unlocked viscoplastic shear zone, and (3) interior segment that slips freely. The three segments are assumed to be linked laterally by two springs that tighten with time, and the increasing elastic stress due to spring tightening eventually leads to plastic failure and initial viscous shear. This simplification leads to seven key model parameters that dictate a wide range of mechanical behaviors of an idealized convergent margin. Specifically, the viscoplastic rheology requires the initially unstable sliding to be terminated nearly instantaneously at a characteristic velocity, which is followed by stable sliding (i.e., slow-slip). The characteristic velocity, which is on the order of <10-7 m/s for the convergent margins examined in this study, depends on the (1) effective coefficient of friction, (2) thickness, (3) depth, and (4) viscosity of the viscoplastic shear zone. As viscosity decreases exponentially with temperature, our model predicts faster slow-slip rates, shorter slow-slip durations, more frequent slow-slip occurrences, and larger slow-slip magnitudes at warmer convergent margins.

Bounding the electrostatic free energies associated with linear continuum models of molecular solvation.

PubMed

Bardhan, Jaydeep P; Knepley, Matthew G; Anitescu, Mihai

2009-03-14

The importance of electrostatic interactions in molecular biology has driven extensive research toward the development of accurate and efficient theoretical and computational models. Linear continuum electrostatic theory has been surprisingly successful, but the computational costs associated with solving the associated partial differential equations (PDEs) preclude the theory's use in most dynamical simulations. Modern generalized-Born models for electrostatics can reproduce PDE-based calculations to within a few percent and are extremely computationally efficient but do not always faithfully reproduce interactions between chemical groups. Recent work has shown that a boundary-integral-equation formulation of the PDE problem leads naturally to a new approach called boundary-integral-based electrostatics estimation (BIBEE) to approximate electrostatic interactions. In the present paper, we prove that the BIBEE method can be used to rigorously bound the actual continuum-theory electrostatic free energy. The bounds are validated using a set of more than 600 proteins. Detailed numerical results are presented for structures of the peptide met-enkephalin taken from a molecular-dynamics simulation. These bounds, in combination with our demonstration that the BIBEE methods accurately reproduce pairwise interactions, suggest a new approach toward building a highly accurate yet computationally tractable electrostatic model.

Bounding the electrostatic free energies associated with linear continuum models of molecular solvation

NASA Astrophysics Data System (ADS)

Bardhan, Jaydeep P.; Knepley, Matthew G.; Anitescu, Mihai

2009-03-01

The importance of electrostatic interactions in molecular biology has driven extensive research toward the development of accurate and efficient theoretical and computational models. Linear continuum electrostatic theory has been surprisingly successful, but the computational costs associated with solving the associated partial differential equations (PDEs) preclude the theory's use in most dynamical simulations. Modern generalized-Born models for electrostatics can reproduce PDE-based calculations to within a few percent and are extremely computationally efficient but do not always faithfully reproduce interactions between chemical groups. Recent work has shown that a boundary-integral-equation formulation of the PDE problem leads naturally to a new approach called boundary-integral-based electrostatics estimation (BIBEE) to approximate electrostatic interactions. In the present paper, we prove that the BIBEE method can be used to rigorously bound the actual continuum-theory electrostatic free energy. The bounds are validated using a set of more than 600 proteins. Detailed numerical results are presented for structures of the peptide met-enkephalin taken from a molecular-dynamics simulation. These bounds, in combination with our demonstration that the BIBEE methods accurately reproduce pairwise interactions, suggest a new approach toward building a highly accurate yet computationally tractable electrostatic model.

Approximate bound-state solutions of the Dirac equation for the generalized yukawa potential plus the generalized tensor interaction

NASA Astrophysics Data System (ADS)

Ikot, Akpan N.; Maghsoodi, Elham; Hassanabadi, Hassan; Obu, Joseph A.

2014-05-01

In this paper, we obtain the approximate analytical bound-state solutions of the Dirac particle with the generalized Yukawa potential within the framework of spin and pseudospin symmetries for the arbitrary к state with a generalized tensor interaction. The generalized parametric Nikiforov-Uvarov method is used to obtain the energy eigenvalues and the corresponding wave functions in closed form. We also report some numerical results and present figures to show the effect of the tensor interaction.

The Salton Seismic Imaging Project: Seismic velocity structure of the Brawley Seismic Zone, Salton Buttes and Geothermal Field, Salton Trough, California

NASA Astrophysics Data System (ADS)

Delph, J.; Hole, J. A.; Fuis, G. S.; Stock, J. M.; Rymer, M. J.

2011-12-01

The Salton Trough is an active rift in southern California in a step-over between the plate-bounding Imperial and San Andreas Faults. In March 2011, the Salton Seismic Imaging Project (SSIP) investigated the rift's crustal structure by acquiring several seismic refraction and reflection lines. One of the densely sampled refraction lines crosses the northern-most Imperial Valley, perpendicular to the strike-slip faults and parallel to a line of small Quaternary rhyolitic volcanoes. The line crosses the obliquely extensional Brawley Seismic Zone and goes through one of the most geothermally productive areas in the United States. Well logs indicate the valley is filled by several kilometers of late Pliocene-recent lacustrine, fluvial, and shallow marine sediment. The 42-km long seismic line was comprised of eleven 110-460 kg explosive shots and receivers at a 100 m spacing. First arrival travel times were used to build a tomographic seismic velocity image of the upper crust. Velocity in the valley increases smoothly from <2 km/s to >5 km/s, indicating diagenesis and gradational metamorphism of rift sediments at very shallow depth due to an elevated geotherm. The velocity gradient is much smaller in the relatively low velocity (<6 km/s) crystalline basement comprised of recently metamorphosed sediment reaching greenschist to lower amphibolite facies. The depth of this basement is about 4-km below the aseismic region of the valley west of the Brawley Seismic Zone, but rises sharply to ~2 km depth beneath the seismically, geothermally, and volcanically active area of the Brawley Seismic Zone. The basement deepens to the northeast of the active tectonic zone and then is abruptly offset to shallower depth on the northeast side of the valley. This offset may be the subsurficial expression of a paleofault, most likely an extension of the Sand Hills Fault, which bounds the basin to the east. Basement velocity east of the fault is ~5.7 km/s, consistent with the granitic rocks of the Chocolate Mountains. The tomographic model shows that the shallow metasedimentary basement as well as the geothermal and volcanic activity seem to be bounded by the sharp western and eastern margins of the Brawley Seismic Zone. At this location, strongly fractured crust allows both hydrothermal and magmatic fluids to rise to the surface in the most rapidly extending portion of the rift basin.

Gas turbine topping combustor

DOEpatents

Beer, J.; Dowdy, T.E.; Bachovchin, D.M.

1997-06-10

A combustor is described for burning a mixture of fuel and air in a rich combustion zone, in which the fuel bound nitrogen in converted to molecular nitrogen. The fuel rich combustion is followed by lean combustion. The products of combustion from the lean combustion are rapidly quenched so as to convert the fuel bound nitrogen to molecular nitrogen without forming NOx. The combustor has an air radial swirler that directs the air radially inward while swirling it in the circumferential direction and a radial fuel swirler that directs the fuel radially outward while swirling it in the same circumferential direction, thereby promoting vigorous mixing of the fuel and air. The air inlet has a variable flow area that is responsive to variations in the heating value of the fuel, which may be a coal-derived fuel gas. A diverging passage in the combustor in front of a bluff body causes the fuel/air mixture to recirculate with the rich combustion zone. 14 figs.

Comparison of phenolic content and antioxidant activities of millet varieties grown in different locations in Sri Lanka.

PubMed

Kumari, Disna; Madhujith, Terrence; Chandrasekara, Anoma

2017-05-01

Soluble and bound phenolic compounds were extracted from different varieties of millet types namely, finger millet, foxtail, and proso millet cultivated at dry and intermediate climatic zones in Sri Lanka. The extracts were examined for their total phenolic content (TPC), total flavonoid content (TFC), and proanthocyanidin content (PC). The antioxidant activities were meassured by reducing power (RP), trolox equivalent antioxidant capacity (TEAC), 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity, ferrous ion chelating ability (FICA), and using a β carotene linoleate model system. The ferulic acid content of extracts were determined using high-performance liquid chromatoghraphy (HPLC). Finger millet showed the highest phenolic content and antioxidant activities compared to proso and foxtail millets. The phenolic content as well as antioxidant activites of soluble and bound phenolic extracts of millets were affected by variety and cultivated location. The highest phenolic content and antioxidant activites were reported for millet samples cultivated in areas belonging to the dry zone in Sri Lanka.

Fibrous gypsum veins as diffuse features and within fault zones: the case study of the Pisco Basin (Ica desert, southern Peru)

NASA Astrophysics Data System (ADS)

Rustichelli, Andrea; Di Celma, Claudio; Tondi, Emanuele; Baud, Patrick; Vinciguerra, Sergio

2016-04-01

New knowledge on patterns of fibrous gypsum veins, their genetic mechanisms, deformation style and weathering are provided by a field- and laboratory-based study carried out on the Neogene to Quaternary Pisco Basin sedimentary strata (porous sandstones, siltstones and diatomites) exposed in the Ica desert, southern Peru. Gypsum veins vary considerably in dimensions, attitudes and timing and can develop in layered and moderately fractured rocks also in the absence of evaporitic layers. Veins occur both as diffuse features, confined to certain stratigraphic levels, and localised within fault zones. Arrays formed by layer-bounded, mutually orthogonal sets of steeply-dipping gypsum veins are reported for the first time. Vein length, height and spacing depend on the thickness of the bed packages in which they are confined. Within fault zones, veins are partly a product of faulting but also inherited layer-bounded features along which faults are superimposed. Due to the different petrophysical properties with respect to the parent rocks and their susceptibility to textural and mineralogical modifications, water dissolution and rupture, gypsum veins may have a significant role in geofluid management. Depending on their patterns and grade of physical and chemical alteration, veins may influence geofluid circulation and storage, acting as barriers to flow and possibly also as conduits.

Concentration profiles of actin-binding molecules in lamellipodia

NASA Astrophysics Data System (ADS)

Falcke, Martin

2016-04-01

Motile cells form lamellipodia in the direction of motion, which are flat membrane protrusions containing an actin filament network. The network flows rearward relative to the leading edge of the lamellipodium due to actin polymerization at the front. Thus, actin binding molecules are subject to transport towards the rear of the cell in the bound state and diffuse freely in the unbound state. We analyze this reaction-diffusion-advection process with respect to the concentration profiles of these species and provide an analytic approximation for them. Network flow may cause a depletion zone of actin binding molecules close to the leading edge. The existence of such zone depends on the free molecule concentration in the cell body, on the ratio of the diffusion length to the distance bound molecules travel rearward with the flow before dissociating, and the ratio of the diffusion length to the width of the region with network flow and actin binding. Our calculations suggest the existence of depletion zones for the F-actin cross-linkers filamin and α-actinin in fish keratocytes (and other cell types), which is in line with the small elastic moduli of the F-actin network close to the leading edge found in measurements of the force motile cells are able to exert.

Numerical Modeling of the Deformation Behavior of Fault Bounded Lens Shaped Bodies in 2D

NASA Astrophysics Data System (ADS)

van der Zee, W.; Urai, J. L.

2001-12-01

Fault zones cause dramatic discontinuous changes in mechanical properties. The early stages of evolution of fault zones are important for its long-term behavior. We consider faults which develop from deformation bands or pre-existing joints which are the initially unconnected discontinuities. With further deformation, these coalesce into a connected network, and develop into a 'mature' fault gouge. When segments are not coplanar, soft linkage or bends in the fault plane (releasing and restraining bends, fault bounded lens-shaped bodies etc) necessarily occurs. Further movement causes additional deformation, and the fault zone has a strongly variable thickness. Here, we present the results of detailed fieldwork combined with numerical modeling on the deformation of fault bounded lens-shaped bodies in the fault zone. Detailed study of a number of lenses in the field shows that the lens is invariably more deformed than the surrounding material. This observation can be explained in several ways. In one end member most of the deformation in the future lens occurs before full coalescence of the slip planes and the formation of the lens. The other end member is that the slip planes coalesce before plastic deformation of the lens is occurring. The internal deformation of the lens occurs after the lens is formed, due to the redistributed stresses in the structure. If this is the case, then lens shaped bodies can be always expected to deform preferentially. Finite element models were used to investigate the shear behavior of a planar fault with a lens shaped body or a sinus-shaped asperity. In a sensitivity analysis, we consider different lens shapes and fault friction coefficients. Results show that 1) during slip, the asperity shears off to form a lens shaped body 2) lens interior deforms more than the surroundings, due to the redistribution of stresses 3) important parameters in this system are the length-thickness ratio of the lens and the fault friction coefficient 4) lens structures can evolve in different ways, but in the final stage the result is a lens with deformed interior In the later stages after further displacement, these zones of preferential deformation evolve into sections containing thick gouge, and the initial lens width controls long term fault gouge thickness.

Computing danger zones for provably safe closely spaced parallel approaches: Theory and experiment

NASA Astrophysics Data System (ADS)

Teo, Rodney

In poor visibility, paired approaches to airports with closely spaced parallel runways are not permitted, thus halving the arrival rate. With Global Positioning System technology, datalinks and cockpit displays, this could be averted. One important problem is ensuring safety during a blundered approach by one aircraft. This is on-going research. A danger zone around the blunderer is required. If the correct danger zone could be calculated, then it would be possible to get 100% of clear-day capacity in poor-visibility days even on 750 foot runways. The danger zones vary significantly (during an approach) and calculating them in real time would be very significant. Approximations (e.g. outer bounds) are not good enough. This thesis presents a way to calculate these danger zones in real time for a very broad class of blunder trajectories. The approach in this thesis differs from others in that it guarantees safety for any possible blunder trajectory as long as the speeds and turn rates of the blunder are within certain bounds. In addition, the approach considers all emergency evasive maneuvers whose speeds and turn rates are within certain bounds about a nominal emergency evasive maneuver. For all combinations of these blunder and evasive maneuver trajectories, it guarantees that the evasive maneuver is safe. For more than 1 million simulation runs, the algorithm shows a 100% rate of Successful Alerts and a 0% rate of Collisions Given an Alert. As an experimental testbed, two 10-ft wingspan fully autonomous unmanned aerial vehicles and a ground station are developed together with J. S. Jang. The development includes the design and flight testing of automatic controllers. The testbed is used to demonstrate the algorithm implementation through an autonomous closely spaced parallel approach, with one aircraft programmed to blunder. The other aircraft responds according to the result of the algorithm on board it and evades autonomously when required. This experimental demonstration is successfully conducted, showing the implementation of the algorithm, in particular, demonstrating that it can run in real time. Finally; with the necessary sensors and datalink, and the appropriate procedures in place, the algorithm developed in this thesis will enable 100% of clear-day capacity in poor-visibility days even on 750 foot runways.

75 FR 82243 - Security Zones; Moored Cruise Ships, Port of San Diego, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-30

...The Coast Guard is establishing a temporary security zone regulation from December 21, 2010, through June 20, 2011. The security zones created by this rule will encompass all navigable waters extending from the surface to the sea floor, within a 100 yard radius around any cruise ship that is moored at any berth within the San Diego port area inside the sea buoys bounding the Port of San Diego. This temporary final rule is necessary to provide for the safety of the cruise ship, vessels, and users of the waterway. Entry into these security zones will be prohibited unless specifically authorized by the Captain of the Port (COTP) San Diego, or his or her designated representative. This rule will also suspend paragraph (b)(2) of 33 CFR 165.1108, a related regulation.

Propagation of arbitrary initial wave packets in a quantum parametric oscillator: Instability zones for higher order moments

NASA Astrophysics Data System (ADS)

Biswas, Subhadip; Chattopadhyay, Rohitashwa; Bhattacharjee, Jayanta K.

2018-05-01

We consider the dynamics of a particle in a parametric oscillator with a view to exploring any quantum feature of the initial wave packet that shows divergent (in time) behaviour for parameter values where the classical motion dynamics of the mean position is bounded. We use Ehrenfest's theorem to explore the dynamics of nth order moment which reduces exactly to a linear non autonomous differential equation of order n + 1. It is found that while the width and skewness of the packet is unbounded exactly in the zones where the classical motion is unbounded, the kurtosis of an initially non-gaussian wave packet can become infinitely large in certain additional zones. This implies that the shape of the wave packet can change drastically with time in these zones.

Topological invariant and cotranslational symmetry in strongly interacting multi-magnon systems

NASA Astrophysics Data System (ADS)

Qin, Xizhou; Mei, Feng; Ke, Yongguan; Zhang, Li; Lee, Chaohong

2018-01-01

It is still an outstanding challenge to characterize and understand the topological features of strongly interacting states such as bound states in interacting quantum systems. Here, by introducing a cotranslational symmetry in an interacting multi-particle quantum system, we systematically develop a method to define a Chern invariant, which is a generalization of the well-known Thouless-Kohmoto-Nightingale-den Nijs invariant, for identifying strongly interacting topological states. As an example, we study the topological multi-magnon states in a generalized Heisenberg XXZ model, which can be realized by the currently available experiment techniques of cold atoms (Aidelsburger et al 2013 Phys. Rev. Lett. 111, 185301; Miyake et al 2013 Phys. Rev. Lett. 111, 185302). Through calculating the two-magnon excitation spectrum and the defined Chern number, we explore the emergence of topological edge bound states and give their topological phase diagram. We also analytically derive an effective single-particle Hofstadter superlattice model for a better understanding of the topological bound states. Our results not only provide a new approach to defining a topological invariant for interacting multi-particle systems, but also give insights into the characterization and understanding of strongly interacting topological states.

Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kwon, Young Do; Finzi, Andrés; Wu, Xueling

2013-03-04

The HIV-1 envelope (Env) spike (gp120{sub 3}/gp41{sub 3}) undergoes considerable structural rearrangements to mediate virus entry into cells and to evade the host immune response. Engagement of CD4, the primary human receptor, fixes a particular conformation and primes Env for entry. The CD4-bound state, however, is prone to spontaneous inactivation and susceptible to antibody neutralization. How does unliganded HIV-1 maintain CD4-binding capacity and regulate transitions to the CD4-bound state? To define this mechanistically, we determined crystal structures of unliganded core gp120 from HIV-1 clades B, C, and E. Notably, all of these unliganded HIV-1 structures resembled the CD4-bound state. Conformationalmore » fixation with ligand selection and thermodynamic analysis of full-length and core gp120 interactions revealed that the tendency of HIV-1 gp120 to adopt the CD4-bound conformation was restrained by the V1/V2- and V3-variable loops. In parallel, we determined the structure of core gp120 in complex with the small molecule, NBD-556, which specifically recognizes the CD4-bound conformation of gp120. Neutralization by NBD-556 indicated that Env spikes on primary isolates rarely assume the CD4-bound conformation spontaneously, although they could do so when quaternary restraints were loosened. Together, the results suggest that the CD4-bound conformation represents a 'ground state' for the gp120 core, with variable loop and quaternary interactions restraining unliganded gp120 from 'snapping' into this conformation. A mechanism of control involving deformations in unliganded structure from a functionally critical state (e.g., the CD4-bound state) provides advantages in terms of HIV-1 Env structural diversity and resistance to antibodies and inhibitors, while maintaining elements essential for entry.« less

Lieb-Robinson bounds for spin-boson lattice models and trapped ions.

PubMed

Jünemann, J; Cadarso, A; Pérez-García, D; Bermudez, A; García-Ripoll, J J

2013-12-06

We derive a Lieb-Robinson bound for the propagation of spin correlations in a model of spins interacting through a bosonic lattice field, which satisfies a Lieb-Robinson bound in the absence of spin-boson couplings. We apply these bounds to a system of trapped ions and find that the propagation of spin correlations, as mediated by the phonons of the ion crystal, can be faster than the regimes currently explored in experiments. We propose a scheme to test the bounds by measuring retarded correlation functions via the crystal fluorescence.

Lieb-Robinson bounds on n -partite connected correlation functions

NASA Astrophysics Data System (ADS)

Tran, Minh Cong; Garrison, James R.; Gong, Zhe-Xuan; Gorshkov, Alexey V.

2017-11-01

Lieb and Robinson provided bounds on how fast bipartite connected correlations can arise in systems with only short-range interactions. We generalize Lieb-Robinson bounds on bipartite connected correlators to multipartite connected correlators. The bounds imply that an n -partite connected correlator can reach unit value in constant time. Remarkably, the bounds also allow for an n -partite connected correlator to reach a value that is exponentially large with system size in constant time, a feature which stands in contrast to bipartite connected correlations. We provide explicit examples of such systems.

Asymmetric thermal-relic dark matter: Sommerfeld-enhanced freeze-out, annihilation signals and unitarity bounds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baldes, Iason; Petraki, Kalliopi, E-mail: iason.baldes@desy.de, E-mail: kpetraki@lpthe.jussieu.fr

Dark matter that possesses a particle-antiparticle asymmetry and has thermalised in the early universe, requires a larger annihilation cross-section compared to symmetric dark matter, in order to deplete the dark antiparticles and account for the observed dark matter density. The annihilation cross-section determines the residual symmetric component of dark matter, which may give rise to annihilation signals during CMB and inside haloes today. We consider dark matter with long-range interactions, in particular dark matter coupled to a light vector or scalar force mediator. We compute the couplings required to attain a final antiparticle-to-particle ratio after the thermal freeze-out of themore » annihilation processes in the early universe, and then estimate the late-time annihilation signals. We show that, due to the Sommerfeld enhancement, highly asymmetric dark matter with long-range interactions can have a significant annihilation rate, potentially larger than symmetric dark matter of the same mass with contact interactions. We discuss caveats in this estimation, relating to the formation of stable bound states. Finally, we consider the non-relativistic partial-wave unitarity bound on the inelastic cross-section, we discuss why it can be realised only by long-range interactions, and showcase the importance of higher partial waves in this regime of large inelasticity. We derive upper bounds on the mass of symmetric and asymmetric thermal-relic dark matter for s -wave and p -wave annihilation, and exhibit how these bounds strengthen as the dark asymmetry increases.« less

Probing Gαi1 Protein Activation at Single Amino Acid Resolution

PubMed Central

Sun, Dawei; Maeda, Shoji; Matkovic, Milos; Mendieta, Sandro; Mayer, Daniel; Dawson, Roger; Schertler, Gebhard F.X.; Madan Babu, M.; Veprintsev, Dmitry B.

2016-01-01

We present comprehensive single amino acid resolution maps of the residues stabilising the human Gαi1 subunit in nucleotide- and receptor-bound states. We generated these maps by measuring the effects of alanine mutations on the stability of Gαi1 and of the rhodopsin-Gαi1 complex. We identified stabilization clusters in the GTPase and helical domains responsible for structural integrity and the conformational changes associated with activation. In activation cluster I, helices α1 and α5 pack against strands β1-3 to stabilize the nucleotide-bound states. In the receptor-bound state, these interactions are replaced by interactions between α5 and strands β4-6. Key residues in this cluster are Y320, crucial for the stabilization of the receptor-bound state, and F336, which stabilizes nucleotide-bound states. Destabilization of helix α1, caused by rearrangement of this activation cluster, leads to the weakening of the inter-domain interface and release of GDP. PMID:26258638

Soliton excitations and interactions for the three-coupled fourth-order nonlinear Schrödinger equations in the alpha helical proteins

NASA Astrophysics Data System (ADS)

Sun, Wen-Rong; Tian, Bo; Wang, Yu-Feng; Zhen, Hui-Ling

2015-06-01

Three-coupled fourth-order nonlinear Schrödinger equations describe the dynamics of alpha helical proteins with the interspine coupling at the higher order. Through symbolic computation and binary Bell-polynomial approach, bilinear forms and N-soliton solutions for such equations are constructed. Key point lies in the introduction of auxiliary functions in the Bell-polynomial expression. Asymptotic analysis is applied to investigate the elastic interaction between the two solitons: two solitons keep their original amplitudes, energies and velocities invariant after the interaction except for the phase shifts. Soliton amplitudes are related to the energy distributed in the solitons of the three spines. Overtaking interaction, head-on interaction and bound-state solitons of two solitons are given. Bound states of three bright solitons arise when all of them propagate in parallel. Elastic interaction between the bound-state solitons and one bright soliton is shown. Increase of the lattice parameter can lead to the increase of the soliton velocity, that is, the interaction period becomes shorter. The solitons propagating along the neighbouring spines are found to interact elastically. Those solitons, exhibited in this paper, might be viewed as a possible carrier of bio-energy transport in the protein molecules.

Spread of entanglement and causality

NASA Astrophysics Data System (ADS)

Casini, Horacio; Liu, Hong; Mezei, Márk

2016-07-01

We investigate causality constraints on the time evolution of entanglement entropy after a global quench in relativistic theories. We first provide a general proof that the so-called tsunami velocity is bounded by the speed of light. We then generalize the free particle streaming model of [1] to general dimensions and to an arbitrary entanglement pattern of the initial state. In more than two spacetime dimensions the spread of entanglement in these models is highly sensitive to the initial entanglement pattern, but we are able to prove an upper bound on the normalized rate of growth of entanglement entropy, and hence the tsunami velocity. The bound is smaller than what one gets for quenches in holographic theories, which highlights the importance of interactions in the spread of entanglement in many-body systems. We propose an interacting model which we believe provides an upper bound on the spread of entanglement for interacting relativistic theories. In two spacetime dimensions with multiple intervals, this model and its variations are able to reproduce intricate results exhibited by holographic theories for a significant part of the parameter space. For higher dimensions, the model bounds the tsunami velocity at the speed of light. Finally, we construct a geometric model for entanglement propagation based on a tensor network construction for global quenches.

Quantum dynamics modeled by interacting trajectories

NASA Astrophysics Data System (ADS)

Cruz-Rodríguez, L.; Uranga-Piña, L.; Martínez-Mesa, A.; Meier, C.

2018-03-01

We present quantum dynamical simulations based on the propagation of interacting trajectories where the effect of the quantum potential is mimicked by effective pseudo-particle interactions. The method is applied to several quantum systems, both for bound and scattering problems. For the bound systems, the quantum ground state density and zero point energy are shown to be perfectly obtained by the interacting trajectories. In the case of time-dependent quantum scattering, the Eckart barrier and uphill ramp are considered, with transmission coefficients in very good agreement with standard quantum calculations. Finally, we show that via wave function synthesis along the trajectories, correlation functions and energy spectra can be obtained based on the dynamics of interacting trajectories.

3-D Numerical Modelling of Oblique Continental Collisions with ASPECT

NASA Astrophysics Data System (ADS)

Karatun, L.; Pysklywec, R.

2017-12-01

Among the fundamental types of tectonic plate boundaries, continent-continent collision is least well understood. Deformation of the upper and middle crustal layers can be inferred from surface structures and geophysical imaging, but the fate of lower crustal rocks and mantle lithosphere is not well resolved. Previous research suggests that shortening of mantle lithosphere generally may be occurring by either: 1) a distributed thickening with a formation of a Raleigh-Tailor (RT) type instability (possibly accompanied with lithospheric folding); or 2) plate-like subduction, which can be one- or two-sided, with or without delamination and slab break-off; a combination of both could be taking place too. 3-D features of the orogens such as along-trench material transfer, bounding subduction zones can influence the evolution of the collision zone significantly. The current study was inspired by South Island of New Zealand - a young collision system where a block of continental crust is being shortened by the relative Australian-Pacific plate motion. The collision segment of the plate boundary is relatively small ( 800 km), and is bounded by oppositely verging subduction zones to the North and South. Here, we present results of 3-D forward numerical modelling of continental collision to investigate some of these processes. To conduct the simulations, we used ASPECT - a highly parallel community-developed code based on the Finite Element method. Model setup for three different sets of models featured 2-D vertical across strike, 3-D with periodic front and back walls, and 3-D with open front and back walls, with velocities prescribed on the left and right faces. We explored the importance of values of convergent velocity, strike-slip velocity and their ratio, which defines the resulting velocity direction relative to the plate boundary (obliquity). We found that higher strike-slip motion promotes strain localization, weakens the lithosphere close to the plate boundary and pushes the balance towards RT instability. Incorporation of the bounding subduction zones caused large amount of material to be pulled out through the sides of the model and into the subduction channel, with slab tear happening at high obliquity values.

A chaotic-dynamical conceptual model to describe fluid flow and contaminant transport in a fractured vadose zone. 1997 progress report and presentations at the annual meeting, Ernest Orlando Lawrence Berkeley National Laboratory, December 3--4, 1997

DOE Office of Scientific and Technical Information (OSTI.GOV)

Faybishenko, B.; Doughty, C.; Geller, J.

1998-07-01

Understanding subsurface flow and transport processes is critical for effective assessment, decision-making, and remediation activities for contaminated sites. However, for fluid flow and contaminant transport through fractured vadose zones, traditional hydrogeological approaches are often found to be inadequate. In this project, the authors examine flow and transport through a fractured vadose zone as a deterministic chaotic dynamical process, and develop a model of it in these terms. Initially, the authors examine separately the geometric model of fractured rock and the flow dynamics model needed to describe chaotic behavior. Ultimately they will put the geometry and flow dynamics together to developmore » a chaotic-dynamical model of flow and transport in a fractured vadose zone. They investigate water flow and contaminant transport on several scales, ranging from small-scale laboratory experiments in fracture replicas and fractured cores, to field experiments conducted in a single exposed fracture at a basalt outcrop, and finally to a ponded infiltration test using a pond of 7 by 8 m. In the field experiments, they measure the time-variation of water flux, moisture content, and hydraulic head at various locations, as well as the total inflow rate to the subsurface. Such variations reflect the changes in the geometry and physics of water flow that display chaotic behavior, which they try to reconstruct using the data obtained. In the analysis of experimental data, a chaotic model can be used to predict the long-term bounds on fluid flow and transport behavior, known as the attractor of the system, and to examine the limits of short-term predictability within these bounds. This approach is especially well suited to the need for short-term predictions to support remediation decisions and long-term bounding studies. View-graphs from ten presentations made at the annual meeting held December 3--4, 1997 are included in an appendix to this report.« less

Internal structure of acceptor-bound excitons in wide-band-gap wurtzite semiconductors

NASA Astrophysics Data System (ADS)

Gil, Bernard; Bigenwald, Pierre; Paskov, Plamen P.; Monemar, Bo

2010-02-01

We describe the internal structure of acceptor-bound excitons in wurtzite semiconductors. Our approach consists in first constructing, in the context of angular momentum algebra, the wave functions of the two-hole system that fulfill Pauli’s exclusion’s principle. Second, we construct the acceptor-bound exciton states by adding the electron states in a similar manner that two-hole states are constructed. We discuss the optical selection rules for the acceptor-bound exciton recombination. Finally, we compare our theory with experimental data for CdS and GaN. In the specific case of CdS for which much experimental information is available, we demonstrate that, compared with cubic semiconductors, the sign of the short-range hole-exchange interaction is reversed and more than one order of magnitude larger. The whole set of data is interpreted in the context of a large value of the short-range hole-exchange interaction Ξ0=3.4±0.2meV . This value dictates the splitting between the ground-state line I1 and the other transitions. The values we find for the electron-hole spin-exchange interaction and of the crystal-field splitting of the two-hole state are, respectively, -0.4±0.1 and 0.2±0.1meV . In the case of GaN, the experimental data for the acceptor-bound excitons in the case of Mg and Zn acceptors, show more than one bound-exciton line. We discuss a possible assignment of these states.

Counterion effects in protein nanoparticle electrostatic binding: a theoretical study.

PubMed

Ghosh, Goutam

2015-04-01

Effects of counterions on the folding conformation of proteins, bound electrostatically on the surface of charge-ligand functionalized nanoparticles, have been investigated based on the protein folding energy calculation. The folding energy of a protein has been taken as a sum of the short range interaction energies, like, the van der Waals attraction and the hydrogen bond energies, and the long range coulomb interaction energy. On electrostatic binding, counterions associated with surface ligands of nanoparticles diffuse into bound proteins through the medium of dispersion. As a result, bound proteins partially unfold, as observed in circular dichroism experiments, which has been realized using the "charge-dipole" and the "charge-induced dipole" interactions of counterions with polar and non-polar residues, respectively. The effect of counterions solvation in the dispersing medium, e.g., water, which causes water molecules to polarize around the counterions, has also been considered. The folding energy of bound proteins has been seen to decrease proportionally with the increasing number of diffusion of counterions and their polarizability. Copyright © 2015 Elsevier B.V. All rights reserved.

Application of the N-quantum approximation to the proton radius problem

NASA Astrophysics Data System (ADS)

Cowen, Steven

This thesis is organized into three parts: 1. Introduction and bound state calculations of electronic and muonic hydrogen, 2. Bound states in motion, and 3.Treatment of soft photons. In the first part, we apply the N-Quantum Approximation (NQA) to electronic and muonic hydrogen and search for any new corrections to energy levels that could account for the 0.31 meV discrepancy of the proton radius problem. We derive a bound state equation and compare our numerical solutions and wave functions to those of the Dirac equation. We find NQA Lamb shift diagrams and calculate the associated energy shift contributions. We do not find any new corrections large enough to account for the discrepancy. In part 2, we discuss the effects of motion on bound states using the NQA. We find classical Lorentz contraction of the lowest order NQA wave function. Finally, in part 3, we develop a clothing transformation for interacting fields in order to produce the correct asymptotic limits. We find the clothing eliminates a trilinear interacting Hamiltonian term and produces a quadrilinear soft photon interaction term.

3 CFR - Presidential Determination on Major Drug Transit or Major Illicit Drug Producing Countries for...

Code of Federal Regulations, 2014 CFR

2014-01-01

... United States. United States-bound trafficking in cocaine through the Caribbean dramatically increased... drug producer or transit zone, the region is a growing concern. The destabilizing effects of increasing... estimates that cocaine trafficking in West Africa generates approximately $1.25 billion at wholesale prices...

50 CFR 660.131 - Pacific whiting fishery management measures.

Code of Federal Regulations, 2013 CFR

2013-10-01

... OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES... trawl gear in the following portions of the fishery management area: (1) Klamath river salmon conservation zone. The ocean area surrounding the Klamath River mouth bounded on the north by 41°38.80′ N. lat...

50 CFR 660.131 - Pacific whiting fishery management measures.

Code of Federal Regulations, 2014 CFR

2014-10-01

... OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES... trawl gear in the following portions of the fishery management area: (1) Klamath river salmon conservation zone. The ocean area surrounding the Klamath River mouth bounded on the north by 41°38.80′ N. lat...

50 CFR 660.131 - Pacific whiting fishery management measures.

Code of Federal Regulations, 2012 CFR

2012-10-01

... OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OFF WEST COAST STATES... trawl gear in the following portions of the fishery management area: (1) Klamath river salmon conservation zone. The ocean area surrounding the Klamath River mouth bounded on the north by 41°38.80′ N. lat...

Influence of the Debye length on the interaction of a small molecule-modified Au nanoparticle with a surface-bound bioreceptor.

PubMed

Bukar, Natalia; Zhao, Sandy Shuo; Charbonneau, David M; Pelletier, Joelle N; Masson, Jean-Francois

2014-05-18

We report that a shorter Debye length and, as a consequence, decreased colloidal stability are required for the molecular interaction of folic acid-modified Au nanoparticles (Au NPs) to occur on a surface-bound receptor, human dihydrofolate reductase (hDHFR). The interaction measured using surface plasmon resonance (SPR) sensing was optimal in a phosphate buffer at pH 6 and ionic strength exceeding 300 mM. Under these conditions, the aggregation constant of the Au NPs was approximately 10(4) M(-1) s(-1) and the Debye length was below 1 nm, on the same length scale as the size of the folate anion (approximately 0.8 nm). Longer Debye lengths led to poorer SPR responses, revealing a reduced affinity of the folic acid-modified Au NPs for hDHFR. While high colloidal stability of Au NPs is desired in most applications, these conditions may hinder molecular interactions due to Debye lengths exceeding the size of the ligand and thus preventing close interactions with the surface-bound molecular receptor.

Evaluation of concepts for controlling exhaust emissions from minimally processed petroleum and synthetic fuels

NASA Technical Reports Server (NTRS)

Russell, P. L.; Beal, G. W.; Sederquist, R. A.; Shultz, D.

1981-01-01

Rich-lean combustor concepts designed to enhance rich combustion chemistry and increase combustor flexibility for NO(x) reduction with minimally processed fuels are examined. Processes such as rich product recirculation in the rich chamber, rich-lean annihilation, and graduated air addition or staged rich combustion to release bound nitrogen in steps of reduced equivalence ratio are discussed. Variations to the baseline rapid quench section are considered, and the effect of residence time in the rich zone is investigated. The feasibility of using uncooled non-metallic materials for the rich zone combustion construction is also addressed. The preliminary results indicate that rich primary zone staged combustion provides environmentally acceptable operation with residual and/or synthetic coal-derived liquid fuels

Geospatial analysis of lake and landscape interactions within the Toolik Lake region, North Slope of Alaska

NASA Astrophysics Data System (ADS)

Pathak, Prasad A.

The Arctic region of Alaska is experiencing severe impacts of climate change. The Arctic lakes ecosystems are bound to undergo alterations in its trophic structure and other chemical properties. However, landscape factors controlling the lake influxes were not studied till date. This research has examined the currently existing lake landscape interactions using Remote Sensing and GIS technology. The statistical modeling was carried out using Regression and CART methods. Remote sensing data was applied to derive the required landscape indices. Remote sensing in the Arctic Alaska faces many challenges including persistent cloud cover, low sun angle and limited snow free period. Tundra vegetation types are interspersed and intricate to classify unlike managed forest stands. Therefore, historical studies have remained underachieved with respect thematic accuracies. However, looking at vegetation communities at watershed level and the implementation of expert classification system achieved the accuracies up to 90%. The research has highlighted the probable role of interactions between vegetation root zones, nutrient availability within active zone, as well as importance of permafrost thawing. Multiple regression analyses and Classification Trees were developed to understand relationships between landscape factors with various chemical parameters as well as chlorophyll readings. Spatial properties of Shrubs and Riparian complexes such as complexity of individual patches at watershed level and within proximity of water channels were influential on Chlorophyll production of lakes. Till-age had significant impact on Total Nitrogen contents. Moreover, relatively young tills exhibited significantly positive correlation with concentration of various ions and conductivity of lakes. Similarly, density of patches of Heath complexes was found to be important with respect to Total Phosphorus contents in lakes. All the regression models developed in this study were significant at 95% confidence level. However, the classification trees could not achieve high predictabilities due to limited number of lakes sampled. Keywords: Landscape factors, Lake primary productivity, Arctic, Climate change, Regression, CART

Barbados: Architecture and implications for accretion

NASA Astrophysics Data System (ADS)

Speed, R. C.; Larue, D. K.

1982-05-01

The island of Barbados exposes the crestal zone of the remarkably broad accretionary prism of the Lesser Antilles foreacrc. The architecture of Barbados is three-tiered: an upper arched cap of Pleistocene reefs that record rapid and differential uplift of the island, an intermediate zone of nappes of mainly abyssal or deep bathyal pelagic rocks, and a basal complex whose lithotypes extend to substantial depth and may be representative of the bulk of the western or inner accretionary prism. The exposed basal complex consists of generally steeply dipping ENE to NE-striking fault-bounded packets which contain rocks of one of three lithic suites: terrigenous (quartzose turbidite and mudstone), debris flow, and hemipelagic (chiefly radiolarite). Present but imcomplete rock dating indicates that the terrigenous and hemipelagic suites and the pelagic rocks of the intermediate zone are age overlapping in Early and Middle Eocene time. Deformation within packets of the basal complex is systematic, pre- or synfault, and indicative of shortening that is generally normal to packet boundaries. A unit of terrigenous materials that probably underwent local resedimentation in the Miocene is recognized in wells, but its relationship to exposed rocks is uncertain. The packet-bounding faults of the basal complex are interpreted to have been primary accretionary surfaces which may have been reactivated by later intraprism movements. Exposed sedimentary rocks of Barbados can be successfully assigned to contemporaneous depositional sites associated with an accretionary prism: terrigenous beds to a trench wedge that was connected to South American sediment sources, debris flow to trench floor or slope basin accumulations of material derived from the lower slope, hemipelagic to Atlantic plain strata, and pelagic rocks of the intermediate zone to deep outer forearc basin sites. The decollement at the base of the intermediate zone is probably due to uplift and arcward motion of the crestal zone of the accretionary prism with respect to the forearc basin during progressive prism growth. Principal uplift of the prism seems to have started, apparently abruptly, in the Miocene. Quaternary uplift of Barbados may be due partly to local diapirism. Paleogene subduction that created the arcward region of the prism probably occurred in a differently configured zone from the present one.

Geological modeling of a fault zone in clay rocks at the Mont-Terri laboratory (Switzerland)

NASA Astrophysics Data System (ADS)

Kakurina, M.; Guglielmi, Y.; Nussbaum, C.; Valley, B.

2016-12-01

Clay-rich formations are considered to be a natural barrier for radionuclides or fluids (water, hydrocarbons, CO2) migration. However, little is known about the architecture of faults affecting clay formations because of their quick alteration at the Earth's surface. The Mont Terri Underground Research Laboratory provides exceptional conditions to investigate an un-weathered, perfectly exposed clay fault zone architecture and to conduct fault activation experiments that allow explore the conditions for stability of such clay faults. Here we show first results from a detailed geological model of the Mont Terri Main Fault architecture, using GoCad software, a detailed structural analysis of 6 fully cored and logged 30-to-50m long and 3-to-15m spaced boreholes crossing the fault zone. These high-definition geological data were acquired within the Fault Slip (FS) experiment project that consisted in fluid injections in different intervals within the fault using the SIMFIP probe to explore the conditions for the fault mechanical and seismic stability. The Mont Terri Main Fault "core" consists of a thrust zone about 0.8 to 3m wide that is bounded by two major fault planes. Between these planes, there is an assembly of distinct slickensided surfaces and various facies including scaly clays, fault gouge and fractured zones. Scaly clay including S-C bands and microfolds occurs in larger zones at top and bottom of the Mail Fault. A cm-thin layer of gouge, that is known to accommodate high strain parts, runs along the upper fault zone boundary. The non-scaly part mainly consists of undeformed rock block, bounded by slickensides. Such a complexity as well as the continuity of the two major surfaces are hard to correlate between the different boreholes even with the high density of geological data within the relatively small volume of the experiment. This may show that a poor strain localization occurred during faulting giving some perspectives about the potential for reactivation and leakage of faults affecting clay materials.

Structural analysis of the Gachsar sub-zone in central Alborz range; constrain for inversion tectonics followed by the range transverse faulting

NASA Astrophysics Data System (ADS)

Yassaghi, A.; Naeimi, A.

2011-08-01

Analysis of the Gachsar structural sub-zone has been carried out to constrain structural evolution of the central Alborz range situated in the central Alpine Himalayan orogenic system. The sub-zone bounded by the northward-dipping Kandovan Fault to the north and the southward-dipping Taleghan Fault to the south is transversely cut by several sinistral faults. The Kandovan Fault that controls development of the Eocene rocks in its footwall from the Paleozoic-Mesozoic units in the fault hanging wall is interpreted as an inverted basin-bounding fault. Structural evidences include the presence of a thin-skinned imbricate thrust system propagated from a detachment zone that acts as a footwall shortcut thrust, development of large synclines in the fault footwall as well as back thrusts and pop-up structures on the fault hanging wall. Kinematics of the inverted Kandovan Fault and its accompanying structures constrain the N-S shortening direction proposed for the Alborz range until Late Miocene. The transverse sinistral faults that are in acute angle of 15° to a major magnetic lineament, which represents a basement fault, are interpreted to develop as synthetic Riedel shears on the cover sequences during reactivation of the basement fault. This overprinting of the transverse faults on the earlier inverted extensional fault occurs since the Late Miocene when the south Caspian basin block attained a SSW movement relative to the central Iran. Therefore, recent deformation in the range is a result of the basement transverse-fault reactivation.

On the initiation of subduction

NASA Technical Reports Server (NTRS)

Mueller, Steve; Phillips, Roger J.

1991-01-01

Estimates of shear resistance associated with lithospheric thrusting and convergence represent lower bounds on the force necessary to promote trench formation. Three environments proposed as preferential sites of incipient subduction are investigated: passive continental margins, transform faults/fracture zones, and extinct ridges. None of these are predicted to convert into subduction zones simply by the accumulation of local gravitational stresses. Subduction cannot initiate through the foundering of dense oceanic lithosphere immediately adjacent to passive continental margins. The attempted subduction of buoyant material at a mature trench can result in large compressional forces in both subducting and overriding plates. This is the only tectonic force sufficient to trigger the nucleation of a new subduction zone. The ubiquitous distribution of transform faults and fracture zones, combined with the common proximity of these features to mature subduction complexes, suggests that they may represent the most likely sites of trench formation if they are even marginally weaker than normal oceanic lithosphere.

Seismological investigation of earthquakes in the New Madrid Seismic Zone. Final report, September 1986--December 1992

DOE Office of Scientific and Technical Information (OSTI.GOV)

Herrmann, R.B.; Nguyen, B.

Earthquake activity in the New Madrid Seismic Zone had been monitored by regional seismic networks since 1975. During this time period, over 3,700 earthquakes have been located within the region bounded by latitudes 35{degrees}--39{degrees}N and longitudes 87{degrees}--92{degrees}W. Most of these earthquakes occur within a 1.5{degrees} x 2{degrees} zone centered on the Missouri Bootheel. Source parameters of larger earthquakes in the zone and in eastern North America are determined using surface-wave spectral amplitudes and broadband waveforms for the purpose of determining the focal mechanism, source depth and seismic moment. Waveform modeling of broadband data is shown to be a powerful toolmore » in defining these source parameters when used complementary with regional seismic network data, and in addition, in verifying the correctness of previously published focal mechanism solutions.« less

Dynamics of bleomycin interaction with a strongly bound hairpin DNA substrate, and implications for cleavage of the bound DNA.

PubMed

Bozeman, Trevor C; Nanjunda, Rupesh; Tang, Chenhong; Liu, Yang; Segerman, Zachary J; Zaleski, Paul A; Wilson, W David; Hecht, Sidney M

2012-10-31

Recent studies involving DNAs bound strongly by bleomycins have documented that such DNAs are degraded by the antitumor antibiotic with characteristics different from those observed when studying the cleavage of randomly chosen DNAs in the presence of excess Fe·BLM. In the present study, surface plasmon resonance has been used to characterize the dynamics of BLM B(2) binding to a strongly bound hairpin DNA, to define the effects of Fe(3+), salt, and temperature on BLM-DNA interaction. One strong primary DNA binding site, and at least one much weaker site, were documented. In contrast, more than one strong cleavage site was found, an observation also made for two other hairpin DNAs. Evidence is presented for BLM equilibration between the stronger and weaker binding sites in a way that renders BLM unavailable to other, less strongly bound DNAs. Thus, enhanced binding to a given site does not necessarily result in increased DNA degradation at that site; i.e., for strongly bound DNAs, the facility of DNA cleavage must involve other parameters in addition to the intrinsic rate of C-4' H atom abstraction from DNA sugars.

Human serum albumin binding assay based on displacement of a non selective fluorescent inhibitor.

PubMed

Thorarensen, Atli; Sarver, Ronald W; Tian, Fang; Ho, Andrea; Romero, Donna L; Marotti, Keith R

2007-08-15

In this paper, we describe a fluorescent antibacterial analog, 6, with utility as a competition probe to determine affinities of other antibacterial analogs for human serum albumin (HSA). Analog 6 bound to HSA with an affinity of 400+/-100 nM and the fluorescence was environmentally sensitive. With 370 nm excitation, environmental sensitivity was indicated by a quenching of the 530 nm emission when the probe bound to HSA. Displacement of dansylsarcosine from HSA by 6 indicated it competed with compounds that bound at site II (ibuprofen binding site) on HSA. Analog 6 also shifted the NMR peaks of an HSA bound oleic acid molecule that itself was affected by compounds that bound at site II. In addition to binding at site II, 6 interacted at site I (warfarin binding site) as indicated by displacement of dansylamide and the shifting of NMR peaks of an HSA bound oleic acid molecule affected by warfarin site binding. Additional evidence for multiple site interaction was discovered when a percentage of 6 could be displaced by either ibuprofen or phenylbutazone. A competition assay was established using 6 to determine relative affinities of other antibacterial inhibitors for HSA.

Subduction of aseismic ridges beneath the Caribbean Plate: Implications for the tectonics and seismic potential of the northeastern Caribbean

NASA Astrophysics Data System (ADS)

McCann, William R.; Sykes, Lynn R.

1984-06-01

Normal seafloor entering the Puerto Rico and northern Lesser Antillean trenches in the northeastern Caribbean is interrupted by a series of aseismic ridges on the North and South American plates. These topographic features lie close to the expected trend of fracture zones created about 80-110 m.y. ago when this seafloor was formed at the Mid-Atlantic Ridge. The northernmost of the ridges that interact with the Lesser Antillean subduction zone, the Barracuda Ridge, intersects the arc in a region of high seismic activity. Some of this seismicity including a large shock in 1974, occurs within the overthrust plate and may be related to the deformation of the Caribbean plate as it overrides the ridge. A large bathymetric high, the Main Ridge, is oriented obliquely to the Puerto Rico trench and intersects the subduction zone north of the Virgin Islands in another cluster of seismic activity along the inner wall of the trench. Data from a seismic network in the northeastern Caribbean indicate that this intersection is also characterized by both interpolate and intraplate seismic activity. Magnetic anomalies, bathymetric trends, and the pattern of deformed sediments on the inner wall of the trench strongly suggest that the Main and Barracuda ridges are parts of a formerly continuous aseismic ridge, a segment of which has recently been overridden by the Caribbean plate. Reconstruction of mid-Miocene to Recent plate motions also suggest that at least two aseismic ridges, and possibly fragments of the Bahama Platform, have interacted with the subduction zone in the northeastern Caribbean. The introduction of these narrow segments of anomalous seafloor into the subduction zone has segmented the arc into elements about 200 km long. These ridges may act as tectonic barriers or asperities during the rupture processes involved in large earthquakes. They also leave a geologic imprint on segments of the arc with which they have interacted. A 50-km landward jump of the locus of island arc volcanism occurred in Late Miocene time along the northern half of the Lesser Antilles. We postulate that the subduction of a segment of seafloor of anomolously thick crust, being more buoyant than adjacent seafloor, resulted in a marked shoaling in the dip of the descending slab and, therefore, a shift of the locus of volcanism. In the region near western Puerto Rico and eastern Hispanolia, Plio-Pleistocene interaction with a similar feature, in this case a part of the Bahama Platform, about 3-4 m.y. ago led to a jump in the locus of subduction as evidenced by a gap in the downgoing seismic zone. That segment of the Bahama Platform interferred with the subduction process and was subsequently sutured onto the Caribbean plate when the boundary jumped about 60 km to the northeast. The maximum size of historic shallow earthquakes along the Lesser Antillean arc varies from about 7.0-7.5 in the center of the arc where the dip of the shallow part of the plate boundary is steep to 8.0-8.5 along the northern part of the arc where the dip is shallow. The interaction of anomalous seafloor, as along the northern Lesser Antilles, can lead to the development of a wider than normal zone of interplate contact and hence to earthquakes that are larger than those associated with more typical seafloor entering subduction zones. Major seismic gaps and regions of high seismic potential currently exist along the northern Lesser Antilles and to the north of Puerto Rico. Both gaps are bounded by anomalous features on the downgoing plate. The intersection of these features with the plate boundary created large asperities that may be good places to search for precursors to future large earthquakes. A great shock in 1787 may have ruptured an existing seismic gap north of Puerto Rico between 65° and 67°W. Thus that gap can be expected to eventually rupture again in a great shock and not to accommodate plate motion by totally aseismic processes.

Design research about coastal zone planning and management information system based on GIS and database technologies

NASA Astrophysics Data System (ADS)

Huang, Pei; Wu, Sangyun; Feng, Aiping; Guo, Yacheng

2008-10-01

As littoral areas in possession of concentrated population, abundant resources, developed industry and active economy, the coastal areas are bound to become the forward positions and supported regions for marine exploitation. In the 21st century, the pressure that coastal zones are faced with is as follows: growth of population and urbanization, rise of sea level and coastal erosion, shortage of freshwater resource and deterioration of water resource, and degradation of fishery resource and so on. So the resources of coastal zones should be programmed and used reasonably for the sustainable development of economy and environment. This paper proposes a design research on the construction of coastal zone planning and management information system based on GIS and database technologies. According to this system, the planning results of coastal zones could be queried and displayed expediently through the system interface. It is concluded that the integrated application of GIS and database technologies provides a new modern method for the management of coastal zone resources, and makes it possible to ensure the rational development and utilization of the coastal zone resources, along with the sustainable development of economy and environment.

Robust adaptive precision motion control of hydraulic actuators with valve dead-zone compensation.

PubMed

Deng, Wenxiang; Yao, Jianyong; Ma, Dawei

2017-09-01

This paper addresses the high performance motion control of hydraulic actuators with parametric uncertainties, unmodeled disturbances and unknown valve dead-zone. By constructing a smooth dead-zone inverse, a robust adaptive controller is proposed via backstepping method, in which adaptive law is synthesized to deal with parametric uncertainties and a continuous nonlinear robust control law to suppress unmodeled disturbances. Since the unknown dead-zone parameters can be estimated by adaptive law and then the effect of dead-zone can be compensated effectively via inverse operation, improved tracking performance can be expected. In addition, the disturbance upper bounds can also be updated online by adaptive laws, which increases the controller operability in practice. The Lyapunov based stability analysis shows that excellent asymptotic output tracking with zero steady-state error can be achieved by the developed controller even in the presence of unmodeled disturbance and unknown valve dead-zone. Finally, the proposed control strategy is experimentally tested on a servovalve controlled hydraulic actuation system subjected to an artificial valve dead-zone. Comparative experimental results are obtained to illustrate the effectiveness of the proposed control scheme. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

Finite-Momentum Dimer Bound State in Spin-Orbit Coupled Fermi Gas

NASA Astrophysics Data System (ADS)

Dong, Lin; Jiang, Lei; Hu, Hui; Pu, Han

2013-03-01

We investigate the two-body properties of a spin-1/2 Fermi gas subject to a spin-orbit coupling induced by laser fields. When attractive s-wave interaction between unlike spins is present, the system may form a dimer bound state. Surprisingly, under proper conditions, the bound state obtains finite center-of-mass momentum, whereas under the same condition but in the absence of the two-body interaction, the system has zero total momentum. This unusual result can be regarded as a consequence of the broken Galilean invariance by the spin-orbit coupling. Such a finite-momentum bound state will have profound effects on the many-body properties of the system. HP is supported by the NSF, the Welch Foundation (Grant No. C-1669), and DARPA. HH is supported by the ARC Discovery Projects (Grant No. DP0984522) and the National Basic Research Program of China (NFRP-China, Grant No. 2011CB921502).

Nearly Supersymmetric Dark Atoms

DOE PAGES

Behbahani, Siavosh R.; Jankowiak, Martin; Rube, Tomas; ...

2011-01-01

Theories of dark matter that support bound states are an intriguing possibility for the identity of the missing mass of the Universe. This article proposes a class of models of supersymmetric composite dark matter where the interactions with the Standard Model communicate supersymmetry breaking to the dark sector. In these models, supersymmetry breaking can be treated as a perturbation on the spectrum of bound states. Using a general formalism, the spectrum with leading supersymmetry effects is computed without specifying the details of the binding dynamics. The interactions of the composite states with the Standard Model are computed, and several benchmarkmore » models are described. General features of nonrelativistic supersymmetric bound states are emphasized.« less

Expression and Purification of a Matrix Metalloprotease Transmembrane Domain in Escherichia coli.

PubMed

Galea, Charles A

2017-01-01

Membrane tethered matrix metalloproteases are bound to the plasma membrane by a glycosylphosphatidylinositol-anchor or a transmembrane domain. To date, most studies of membrane-bound matrix metalloprotease have focused on the globular catalytic and protein-protein interaction domains of these enzymes. However, the transmembrane domains have been poorly studied even though they are known to mediate intracellular signaling via interaction with various cellular proteins. The expression and purification of the transmembrane domain of these proteins can be challenging due to their hydrophobic nature. In this chapter we describe the purification of a transmembrane domain for a membrane-bound matrix metalloprotease expressed in E. coli and its initial characterization by NMR spectroscopy.

The direct reaction field hamiltonian: Analysis of the dispersion term and application to the water dimer

NASA Astrophysics Data System (ADS)

Thole, B. T.; Van Duijnen, P. Th.

1982-10-01

The induction and dispersion terms obtained from quantum-mechanical calculations with a direct reaction field hamiltonian are compared to second order perturbation theory expressions. The dispersion term is shown to give an upper bound which is a generalization of Alexander's upper bound. The model is illustrated by a calculation on the interactions in the water dimer. The long range Coulomb, induction and dispersion interactions are reasonably reproduced.

Minimizers with Bounded Action for the High-Dimensional Frenkel-Kontorova Model

NASA Astrophysics Data System (ADS)

Miao, Xue-Qing; Wang, Ya-Nan; Qin, Wen-Xin

In Aubry-Mather theory for monotone twist maps or for one-dimensional Frenkel-Kontorova (FK) model with nearest neighbor interactions, each global minimizer (minimal energy configuration) is naturally Birkhoff. However, this is not true for the one-dimensional FK model with non-nearest neighbor interactions or for the high-dimensional FK model. In this paper, we study the Birkhoff property of minimizers with bounded action for the high-dimensional FK model.

Free-zone electrophoresis of animal cells. 1: Experiments on cell-cell interactions

NASA Technical Reports Server (NTRS)

Todd, P. W.; Hjerten, S.

1985-01-01

The electrophoretically migrating zones wasa monitored. The absence of fluid flows in the direction of migration permits direct measurement of electrophoretic velocities of any material. Sedimentation is orthogonal to electrokinetic motion and the effects of particle-particle interaction on electrophoretic mobility is studied by free zone electrophoresis. Fixed erythrocytes at high concentrations, mixtures of fixed erythrocytes from different animal species, and mixtures of cultured human cells were studied in low ionic strength buffers. The electrophoretic velocity of fixed erythrocytes was not altered by increasing cell concentration or by the mixing of erythrocytes from different species. When zones containing cultured human glial cells and neuroblastoma cells are permitted to interact during electrophoresis, altered migration patterns occur. It is found that cell-cell interactions depends upon cell type.

The permeability of fault zones in the upper continental crust: statistical analysis from 460 datasets, updated depth-trends, and permeability contrasts between fault damage zones and protoliths.

NASA Astrophysics Data System (ADS)

Scibek, J.; Gleeson, T. P.; Ingebritsen, S.; McKenzie, J. M.

2017-12-01

Fault zones are an important part of the hydraulic structure of the Earth's crust and influence a wide range of Earth processes and a large amount of test data has been collected over the years. We conducted a meta-analysis of global of fault zone permeabilities in the upper brittle continental crust, using about 10,000 published research items from a variety of geoscience and engineering disciplines. Using 460 datasets at 340 localities, the in-situ bulk permeabilities (>10's meters scale, including macro-fractures) and matrix permeabilities (drilled core samples or outcrop spot tests) are separated, analyzed, and compared. The values have log-normal distributions and we analyze the log-permeability values. In the fault damage zones of plutonic and metamorphic rocks the mean bulk permeability was 1x10-14m2, compared to matrix mean of 1x10-16m2. In sedimentary siliciclastic rocks the mean value was the same for bulk and matrix permeability (4x10-14m2). More useful insights were determined from the regression analysis of paired permeability data at all sites (fault damage zone vs. protolith). Much of the variation in fault permeability is explained by the permeability of protolith: in relatively weak volcaniclastic and clay-rich rocks up to 70 to 88% of the variation is explained, and only 20-30% in plutonic and metamorphic rocks. We propose a revision at shallow depths for previously published upper-bound curves for the "fault-damaged crust " and the geothermal-metamorphic rock assemblage outside of major fault zones. Although the bounding curves describe the "fault-damaged crust" permeability parameter space adequately, the only statistically significant permeability-depth trend is for plutonic and metamorphic rocks (50% of variation explained). We find a depth-dependent systematic variation of the permeability ratio (fault damage zone / protolith) from the in-situ bulk permeability global data. A moving average of the log-permeability ratio value is 2 to 2.5 (global mean is 2.2). Although the data is unevenly distributed with depth, the present evidence is that the permeability ratio is at a maximum at depths 1 to 2 kilometers, decreases with depth below 2km, and is also lower near the ground surface.

Geophysical characterization of transtensional fault systems in the Eastern California Shear Zone-Walker Lane Belt

NASA Astrophysics Data System (ADS)

McGuire, M.; Keranen, K. M.; Stockli, D. F.; Feldman, J. D.; Keller, G. R.

2011-12-01

The Eastern California Shear Zone (ECSZ) and Walker Lane belt (WL) accommodate ~25% of plate motion between the North American and Pacific plates. Faults within the Mina deflection link the ECSZ and the WL, transferring strain from the Owens Valley and Death Valley-Fish Lake Valley fault systems to the transcurrent faults of the central Walker Lane. During the mid to late Miocene the majority of strain between these systems was transferred through the Silver Peak-Lone Mountain (SPLM) extensional complex via a shallowly dipping detachment. Strain transfer has since primarily migrated north to the Mina Deflection; however, high-angle faults bounding sedimentary basins and discrepancies between geodetic and geologic models indicate that the SPLM complex may still actively transfer a portion of the strain from the ECSZ to the WL on a younger set of faults. Establishing the pattern and amount of active strain transfer within the SPLM region is required for a full accounting of strain accommodation, and provides insight into strain partitioning at the basin scale within a broader transtensional zone. To map the active structures in and near Clayton Valley, within the SPLM region, we collected seismic reflection and refraction profiles and a dense grid of gravity readings that were merged with existing gravity data. The primary goals were to determine the geometry of the high-angle fault system, the amount and sense of offset along each fault set, connectivity of the faults, and the relationship of these faults to the Miocene detachment. Seismic reflection profiles imaged the high-angle basin-bounding normal faults and the detachment in both the footwall and hanging wall. The extensional basin is ~1 km deep, with a steep southeastern boundary, a gentle slope to the northwest, and a sharp boundary on the northwest side, suggestive of another fault system. Two subparallel dip-slip faults bound the southeast (deeper) basin margin with a large lateral velocity change (from ~2.0 km/sec in the basin fill to 4.5-5.5 km/sec in the footwall) across the basin-bounding normal fault system. Very fast (approaching 6.0 km/sec) basement underlies the basin fill. The residual gravity anomaly indicates that Clayton Valley is divided into a shallower northern basin, imaged by the seismic lines, and a deeper, more asymmetric southern basin. Faults within Clayton Valley are curvilinear in nature, similar to faults observed in other step-over systems (e.g., the Mina Deflection). Gravity profiles support the seismic reflection interpretation and indicate a high angle fault (>60 degrees) bounding the northern sub-basin on its southeast margin, with a shallower fault bounding it to the northwest. A basement high trends west-northwest and separates the northern and southern basins, and is likely bounded on its southern edge by a predominantly strike-slip fault crossing the valley. Much of the strain accommodated within the southern sub-basin appears to be transferred into southern Big Smoky Valley, northwest of Clayton Valley, via these dextral strike-slip faults that obliquely cross Clayton Valley.

Seismic evidence for olivine phase changes at the 410- and 660-kilometer discontinuities.

PubMed

Lebedev, Sergei; Chevrot, Sébastien; van der Hilst, Rob D

2002-05-17

The view that the seismic discontinuities bounding the mantle transition zone at 410- and 660-kilometer depths are caused by isochemical phase transformations of the olivine structure is debated. Combining converted-wave measurements in East Asia and Australia with seismic velocities from regional tomography studies, we observe a correlation of the thickness of, and wavespeed variations within, the transition zone that is consistent with olivine structural transformations. Moreover, the seismologically inferred Clapeyron slopes are in agreement with the mineralogical Clapeyron slopes of the (Mg,Fe)2SiO4 spinel and postspinel transformations.

46 CFR 42.30-30 - Enclosed seas.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 2 2011-10-01 2011-10-01 false Enclosed seas. 42.30-30 Section 42.30-30 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) LOAD LINES DOMESTIC AND FOREIGN VOYAGES BY SEA Zones, Areas, and Seasonal Periods § 42.30-30 Enclosed seas. (a) Baltic Sea. This sea bounded by the parallel...

46 CFR 42.30-30 - Enclosed seas.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Enclosed seas. 42.30-30 Section 42.30-30 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) LOAD LINES DOMESTIC AND FOREIGN VOYAGES BY SEA Zones, Areas, and Seasonal Periods § 42.30-30 Enclosed seas. (a) Baltic Sea. This sea bounded by the parallel...

46 CFR 42.30-30 - Enclosed seas.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 2 2012-10-01 2012-10-01 false Enclosed seas. 42.30-30 Section 42.30-30 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) LOAD LINES DOMESTIC AND FOREIGN VOYAGES BY SEA Zones, Areas, and Seasonal Periods § 42.30-30 Enclosed seas. (a) Baltic Sea. This sea bounded by the parallel...

46 CFR 42.30-30 - Enclosed seas.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 2 2014-10-01 2014-10-01 false Enclosed seas. 42.30-30 Section 42.30-30 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) LOAD LINES DOMESTIC AND FOREIGN VOYAGES BY SEA Zones, Areas, and Seasonal Periods § 42.30-30 Enclosed seas. (a) Baltic Sea. This sea bounded by the parallel...

46 CFR 42.30-30 - Enclosed seas.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 2 2013-10-01 2013-10-01 false Enclosed seas. 42.30-30 Section 42.30-30 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) LOAD LINES DOMESTIC AND FOREIGN VOYAGES BY SEA Zones, Areas, and Seasonal Periods § 42.30-30 Enclosed seas. (a) Baltic Sea. This sea bounded by the parallel...

77 FR 1025 - Security Zones; Cruise Ships, San Pedro Bay, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2012-01-09

... of the sea buoys bounding the Port of Los Angeles or Port of Long Beach or at designated anchorages... prohibited unless specifically authorized by the Captain of the Port (COTP) Los Angeles-- Long Beach, or his... Management, Coast Guard Sector Los Angeles--Long Beach, Coast Guard; telephone (310) 521-3860, email Stephen...

33 CFR 334.1320 - Kuluk Bay, Adak, Alaska; naval restricted area.

Code of Federal Regulations, 2011 CFR

2011-07-01

... restricted area. 334.1320 Section 334.1320 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.1320 Kuluk Bay, Adak, Alaska; naval restricted area. (a) The area. The northwest portion of Kuluk Bay bounded as follows...

33 CFR 334.1320 - Kuluk Bay, Adak, Alaska; naval restricted area.

Code of Federal Regulations, 2014 CFR

2014-07-01

... restricted area. 334.1320 Section 334.1320 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.1320 Kuluk Bay, Adak, Alaska; naval restricted area. (a) The area. The northwest portion of Kuluk Bay bounded as follows...

33 CFR 334.1320 - Kuluk Bay, Adak, Alaska; naval restricted area.

Code of Federal Regulations, 2013 CFR

2013-07-01

... restricted area. 334.1320 Section 334.1320 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.1320 Kuluk Bay, Adak, Alaska; naval restricted area. (a) The area. The northwest portion of Kuluk Bay bounded as follows...

33 CFR 334.1320 - Kuluk Bay, Adak, Alaska; naval restricted area.

Code of Federal Regulations, 2010 CFR

2010-07-01

... restricted area. 334.1320 Section 334.1320 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.1320 Kuluk Bay, Adak, Alaska; naval restricted area. (a) The area. The northwest portion of Kuluk Bay bounded as follows...

33 CFR 334.1320 - Kuluk Bay, Adak, Alaska; naval restricted area.

Code of Federal Regulations, 2012 CFR

2012-07-01

... restricted area. 334.1320 Section 334.1320 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.1320 Kuluk Bay, Adak, Alaska; naval restricted area. (a) The area. The northwest portion of Kuluk Bay bounded as follows...

33 CFR 100.1301 - Seattle seafair unlimited hydroplane race.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Washington bounded by the Interstate 90 (Mercer Island /Lacey V. Murrow) Bridge, the western shore of Lake Washington, and the east/west line drawn tangent to Bailey Peninsula and along the shoreline of Mercer Island... hydroplane race course and then to the northerly tip of Ohlers Island in Andrews Bay. The western zone is...

33 CFR 100.1301 - Seattle seafair unlimited hydroplane race.

Code of Federal Regulations, 2013 CFR

2013-07-01

... Washington bounded by the Interstate 90 (Mercer Island /Lacey V. Murrow) Bridge, the western shore of Lake Washington, and the east/west line drawn tangent to Bailey Peninsula and along the shoreline of Mercer Island... hydroplane race course and then to the northerly tip of Ohlers Island in Andrews Bay. The western zone is...

33 CFR 100.1301 - Seattle seafair unlimited hydroplane race.

Code of Federal Regulations, 2012 CFR

2012-07-01

... Washington bounded by the Interstate 90 (Mercer Island /Lacey V. Murrow) Bridge, the western shore of Lake Washington, and the east/west line drawn tangent to Bailey Peninsula and along the shoreline of Mercer Island... hydroplane race course and then to the northerly tip of Ohlers Island in Andrews Bay. The western zone is...

33 CFR 100.1301 - Seattle seafair unlimited hydroplane race.

Code of Federal Regulations, 2010 CFR

2010-07-01

... Washington bounded by the Interstate 90 (Mercer Island /Lacey V. Murrow) Bridge, the western shore of Lake Washington, and the east/west line drawn tangent to Bailey Peninsula and along the shoreline of Mercer Island... hydroplane race course and then to the northerly tip of Ohlers Island in Andrews Bay. The western zone is...

33 CFR 100.1301 - Seattle seafair unlimited hydroplane race.

Code of Federal Regulations, 2014 CFR

2014-07-01

... Washington bounded by the Interstate 90 (Mercer Island /Lacey V. Murrow) Bridge, the western shore of Lake Washington, and the east/west line drawn tangent to Bailey Peninsula and along the shoreline of Mercer Island... hydroplane race course and then to the northerly tip of Ohlers Island in Andrews Bay. The western zone is...

Quarkonium-nucleus bound states from lattice QCD

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beane, S.  R.; Chang, E.; Cohen, S.  D.

2015-06-11

Quarkonium-nucleus systems are composed of two interacting hadronic states without common valence quarks, which interact primarily through multi-gluon exchanges, realizing a color van der Waals force. We present lattice QCD calculations of the interactions of strange and charm quarkonia with light nuclei. Both the strangeonium-nucleus and charmonium-nucleus systems are found to be relatively deeply bound when the masses of the three light quarks are set equal to that of the physical strange quark. Extrapolation of these results to the physical light-quark masses suggests that the binding energy of charmonium to nuclear matter is B < 40 MeV.

Radiation enhanced antiferromagnetic exchange between spins in a superconducting host

NASA Astrophysics Data System (ADS)

Akkaravarawong, Kamphol; Vayrynen, Jukka; Sau, Jay; Glazman, Leonid; Yao, Norman

2017-04-01

A magnetic impurity on a conventional superconductor can host a localized bound state whose energy lies inside the superconducting gap. If the distance between two such impurities is smaller than the coherence length, the presence of these so-called Yu-Shiba-Rusinov (YSR) bound states can induce an antiferromagnetic exchange interaction between the impurities, falling off as 1 /r2 . Although the YSR interaction exhibits a slower decay than conventional RKKY interactions, its strength is significantly weaker, making it extremely challenging to experimentally observe. We demonstrate that the strength of the YSR interaction can be enhanced via radiation assisted virtual occupation, and that the signature of this coupling can naturally be observed through spectroscopy.

A Unified Approach to Adaptive Neural Control for Nonlinear Discrete-Time Systems With Nonlinear Dead-Zone Input.

PubMed

Liu, Yan-Jun; Gao, Ying; Tong, Shaocheng; Chen, C L Philip

2016-01-01

In this paper, an effective adaptive control approach is constructed to stabilize a class of nonlinear discrete-time systems, which contain unknown functions, unknown dead-zone input, and unknown control direction. Different from linear dead zone, the dead zone, in this paper, is a kind of nonlinear dead zone. To overcome the noncausal problem, which leads to the control scheme infeasible, the systems can be transformed into a m -step-ahead predictor. Due to nonlinear dead-zone appearance, the transformed predictor still contains the nonaffine function. In addition, it is assumed that the gain function of dead-zone input and the control direction are unknown. These conditions bring about the difficulties and the complicacy in the controller design. Thus, the implicit function theorem is applied to deal with nonaffine dead-zone appearance, the problem caused by the unknown control direction can be resolved through applying the discrete Nussbaum gain, and the neural networks are used to approximate the unknown function. Based on the Lyapunov theory, all the signals of the resulting closed-loop system are proved to be semiglobal uniformly ultimately bounded. Moreover, the tracking error is proved to be regulated to a small neighborhood around zero. The feasibility of the proposed approach is demonstrated by a simulation example.

Role of Clay Minerals in Long-Distance Transport of Landslides in Valles Marineris, Mars

NASA Astrophysics Data System (ADS)

Watkins, J.; Ehlmann, B. L.; Yin, A.

2014-12-01

Long-runout (> 50 km) subaerial landslides are rare on Earth, but are common features episodically shaping Mars' Valles Marineris (VM) trough system over the past 3.5 billion years. They display two end-member morphologies: a thick-skinned inner zone, characterized by fault-bounded, rotated blocks near their source region, and a thin-skinned, exceptionally long-runout outer zone, characterized by thin sheets spreading over 10s of km across the trough floor. Four decades of studies on the latter have resulted in two main competing hypotheses to explain their long-distance transport: (1) movement of landslides over layers of trapped air or soft materials containing ice or snow, enabling basal lubrication, and (2) fluidization of landslide materials with or without the presence of water and volatiles. To address this issue, we examine the mineralogic composition of landslides across VM using Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) near-infrared spectral data analysis coupled with detailed geologic mapping and morphometric analysis of satellite images. Our survey reveals a general correlation between transport distance, significant lateral spreading, and the presence of hydrated silicates among VM landslides. Given that smectite clay absorbs water into its layered crystal structure and can reduce the friction coefficient by a factor of three v. that of dry rocks, these results suggest that hydrated silicates played a decisive role in facilitating long-runout landslide transport in VM. We propose that, concurrent with downslope failure and sliding of broken trough-wall rock, frontal landslide masses overrode and entrained hydrated-silicate-bearing trough-floor deposits, lubricating the basal sliding zones and permitting the landslide outer zones to spread laterally while moving forward over the low-friction surface. The key participation of hydrated silicates in episodic, sustained landslide activity throughout the canyon implies that clay minerals, generated by water-rock interactions in the Noachian and Hesperian (4.1- 3.3 Ga), exert a long-lasting influence on geomorphic processes that shape the surface of the planet.

INTERACTION OF LASER RADIATION WITH MATTER: Calculation of the kinetics of heating and structural changes in the cartilaginous tissue under the action of laser radiation

NASA Astrophysics Data System (ADS)

Sobol', E. N.; Kitai, M. S.

1998-07-01

A theoretical model is developed for the calculation of the temperature fields and determination of the size of a zone with structural changes in the cartilaginous tissue. The model is based on a simultaneous analysis of the heat and mass transfer processes and it takes into account the bulk absorption of laser radiation by the tissue, surface evaporation of water, and temperature dependences of the diffusion coefficients. It is assumed that under the influence of a phase transition between free and bound water, caused by heating of the cartilage to 70°C, the proteoglycans of the cartilage matrix become mobile and, as a result of such mass transfer, structural changes are induced in the cartilaginous tissue causing relaxation of stresses or denaturation. It is shown that the maximum temperature is then reached not on the irradiated surface but at some distance from it, and that the size of the zones of structural changes (denaturation depth) depends strongly on the energy density of the laser radiation and its wavelength, on the duration of the irradiation, and on the cartilage thickness. This model makes it possible to calculate the temperature fields and the depth of structural changes in laser-induced relaxation of stresses and changes in the shape of the cartilaginous tissue.

Static and kinetic studies of calmodulin and melittin complex.

PubMed

Itakura, M; Iio, T

1992-08-01

Ca2+ binding to calmodulin triggers conformational change of the protein which induces exposure of hydrophobic surfaces. Melittin has been believed to bind to Ca(2+)-bound calmodulin through the exposed hydrophobic surfaces. However, tryptophan fluorescence measurements and gel chromatography experiments with the melittin-calmodulin system revealed that melittin bound to calmodulin at zero salt concentration even in the absence of Ca2+; addition of salt removed melittin from Ca(2+)-free calmodulin. This means not only the hydrophobic interaction but also the electrostatic interaction contributes to the melittin-calmodulin binding. The fluorescence stopped-flow studies of the dissociation reaction of melittin-calmodulin complex revealed that Ca2+ removal from the complex induced a conformational change of calmodulin, resulting in reduction of the hydrophobic interaction between melittin and calmodulin, but the electrostatic interaction kept melittin still bound to calmodulin for a subsecond lag period, after which melittin dissociated from calmodulin. The fluorescence stopped-flow experiments on the dissociation reaction of complex of melittin and tryptic fragment(s) of calmodulin revealed that the lag period of the melittin dissociation reaction was attributable to the interaction between the C-terminal half of calmodulin and the C-terminal region of melittin.

Dynamic interactions between a membrane binding protein and lipids induce fluctuating diffusivity

PubMed Central

Yamamoto, Eiji; Akimoto, Takuma; Kalli, Antreas C.; Yasuoka, Kenji; Sansom, Mark S. P.

2017-01-01

Pleckstrin homology (PH) domains are membrane-binding lipid recognition proteins that interact with phosphatidylinositol phosphate (PIP) molecules in eukaryotic cell membranes. Diffusion of PH domains plays a critical role in biological reactions on membrane surfaces. Although diffusivity can be estimated by long-time measurements, it lacks information on the short-time diffusive nature. We reveal two diffusive properties of a PH domain bound to the surface of a PIP-containing membrane using molecular dynamics simulations. One is fractional Brownian motion, attributed to the motion of the lipids with which the PH domain interacts. The other is temporally fluctuating diffusivity; that is, the short-time diffusivity of the bound protein changes substantially with time. Moreover, the diffusivity for short-time measurements is intrinsically different from that for long-time measurements. This fluctuating diffusivity results from dynamic changes in interactions between the PH domain and PIP molecules. Our results provide evidence that the complexity of protein-lipid interactions plays a crucial role in the diffusion of proteins on biological membrane surfaces. Changes in the diffusivity of PH domains and related membrane-bound proteins may in turn contribute to the formation/dissolution of protein complexes in membranes. PMID:28116358

Waves and mesoscale features in the marginal ice zone

NASA Technical Reports Server (NTRS)

Liu, Antony K.; Peng, Chih Y.

1993-01-01

Ocean-ice interaction processes in the Marginal Ice Zone (MIZ) by waves and mesoscale features, such as upwelling and eddies, are studied using ERS-1 Synthetic Aperture Radar (SAR) imagery and wave-ice interaction models. Satellite observations of mesoscale features can play a crucial role in ocean-ice interaction study.

A Role of the Reaction Kernel in Propagation and Stabilization of Edge Diffusion Flames of C1-C3 Hydrocarbons

NASA Technical Reports Server (NTRS)

Takahashi, Fumiaki; Katta, Viswanath R.

2003-01-01

Diffusion flame stabilization is of essential importance in both Earth-bound combustion systems and spacecraft fire safety. Local extinction, re-ignition, and propagation processes may occur as a result of interactions between the flame zone and vortices or fire-extinguishing agents. By using a computational fluid dynamics code with a detailed chemistry model for methane combustion, the authors have revealed the chemical kinetic structure of the stabilizing region of both jet and flat-plate diffusion flames, predicted the flame stability limit, and proposed diffusion flame attachment and detachment mechanisms in normal and microgravity. Because of the unique geometry of the edge of diffusion flames, radical back-diffusion against the oxygen-rich entrainment dramatically enhanced chain reactions, thus forming a peak reactivity spot, i.e., reaction kernel, responsible for flame holding. The new results have been obtained for the edge diffusion flame propagation and attached flame structure using various C1-C3 hydrocarbons.

Effects of Climate on Co-evolution of Weathering Profiles and Hillscapes

NASA Astrophysics Data System (ADS)

Anderson, R. S.; Rajaram, H.; Anderson, S. P.

2017-12-01

Considerable debate revolves around the relative importance of rock type, tectonics, and climate in creating the architecture of the critical zone. It has recently been proposed that differences in the depths and patterns of weathering between landscapes in Colorado's Front Range and South Carolina's piedmont can be attributed to the state of stress in the rock imposed by the magnitude and orientation the regional stresses with respect to the ridgelines (St. Claire et al., 2016). We argue for the importance of the climate, and in particular, in temperate regions, the amount of recharge. We employ numerical models of hillslope evolution between bounding erosional channels, in which the degree of rock weathering governs the rate of transformation of rock to soil. As the water table drapes between the stream channels, fresh rock is brought into the weathering zone at a rate governed by the rate of incision of the channels. We track the chemical weathering of rock, represented by alteration of feldspar to clays, which in turn requires calculation of the concentration of reactive species in the water along hydrologic flow paths. We present results from analytic solutions to the flow field in which travel times can be efficiently assessed. Below the water table, flow paths are hyperbolic, taking on considerable lateral components as they veer toward the bounding channels that serve as drains to the hillslope. We find that if water is far from equilibrium with respect to weatherable minerals at the water table, as occurs in wet, slowly-eroding landscapes, deep weathering can occur well below the water table to levels approximating the base of the bounding channels. In dry climates, on the other hand, the weathering zone is limited to a shallow surface - parallel layer. These models capture the essence of the observed differences in depth to fresh rock in both wet and dry climates without appeal to the state of stress in the rock.

Presynaptic active zones of mammalian neuromuscular junctions: Nanoarchitecture and selective impairments in aging.

PubMed

Badawi, Yomna; Nishimune, Hiroshi

2018-02-01

Neurotransmitter release occurs at active zones, which are specialized regions of the presynaptic membrane. A dense collection of proteins at the active zone provides a platform for molecular interactions that promote recruitment, docking, and priming of synaptic vesicles. At mammalian neuromuscular junctions (NMJs), muscle-derived laminin β2 interacts with presynaptic voltage-gated calcium channels to organize active zones. The molecular architecture of presynaptic active zones has been revealed using super-resolution microscopy techniques that combine nanoscale resolution and multiple molecular identification. Interestingly, the active zones of adult NMJs are not stable structures and thus become impaired during aging due to the selective degeneration of specific active zone proteins. This review will discuss recent progress in the understanding of active zone nanoarchitecture and the mechanisms underlying active zone organization in mammalian NMJs. Furthermore, we will summarize the age-related degeneration of active zones at NMJs, and the role of exercise in maintaining active zones. Copyright © 2017 Elsevier Ireland Ltd and Japan Neuroscience Society. All rights reserved.

Magma-tectonic interactions in an area of active extension; a review of recent observations, models and interpretations from Iceland

NASA Astrophysics Data System (ADS)

Pedersen, Rikke; Sigmundsson, Freysteinn; Drouin, Vincent; Rafn Heimisson, Elías; Parks, Michelle; Dumont, Stéphanie; Árnadóttir, Þóra; Masterlark, Timothy; Ófeigsson, Benedíkt G.; Jónsdóttir, Kristín; Hooper, Andrew

2016-04-01

The geological setting of Iceland provides rich opportunities of studying magma-tectonic interactions, as it constitutes Earth's largest part of the mid-oceanic ridge system exposed above sea level. A series of volcanic and seismic zones accommodate the ~2 cm/year spreading between the North-American and Eurasian plates, and the Icelandic hot-spot conveniently provides the means of exposing this oceanic crust-forming setting above sea-level. Both extinct and active plumbing system structures can be studied in Iceland, as the deeply eroded tertiary areas provide views into the structures of extinct volcanic systems, and active processes can be inferred on in the many active volcanic systems. A variety of volcanic and tectonic processes cause the Icelandic crust to deform continuously, and the availability of contemporaneous measurements of crustal deformation and seismicity provide a powerful data set, when trying to obtain insight into the processes working at depth, such as magma migration through the uppermost lithosphere, magma induced host rock deformation and volcanic eruption locations and styles. The inferences geodetic and seismic datasets allow on the active plate spreading processes and subsurface magma movements in Iceland will be reviewed, in particular in relation to the Northern Volcanic Zone (NVZ). There the three phases of a rifting cycle (rifting, post-rifting, inter-rifting) have been observed. The NVZ is an extensional rift segment, bounded to the south by the Icelandic mantle plume, and to the north by the Tjörnes transform zone. The NVZ has typically been divided into five partly overlapping en-echelon fissure swarms, each with a central main volcanic production area. Most recently, additional insight into controlling factors during active rifting has been provided by the Bárðarbunga activity in 2014-2015 that included a major rifting event, the largest effusive eruption in Iceland since 1783, and a gradual caldera collapse. It is evident from available datasets that improved rifting-cycle models do need to incorporate realistic lithospheric properties, as well as the dynamic transport of magma, in order to reproduce the variety of observations, and provide means of forecasting large future dyking events and eruptions at active rifting segments.

Kinematic Reconstruction of the Costa Rican Margin: Evidence for Discontinuities in Deformation Across the Margin

NASA Astrophysics Data System (ADS)

Gose, B.; Bangs, N. L.; McIntosh, K. D.

2016-12-01

Recently acquired 3D seismic reflection data shows that both in-sequence and out-of sequence faults makeup the interior structure of the Costa Rican convergent margin. Recent studies have found evidence for a phase of accretion that led to the formation of a series of thrust-bounded folds that are easily observable within the margin-wedge fabric. Along a primary 2D transect through the center of the 3D survey, faults partition the outer 23km of the margin into 8 fault-bounded segments that can be divided into two characteristic zones, those closest to the trench (S1-S3) and those furthest (S4-S8) separated by a slope break 10 km from the trench (Fig 1). To better understand the observed structure, each segment was characterized as a fault-propagation fold and geometrically modeled using Paradigm's Geosec 2D software. Kinematic flexural slip modules were applied in order to perform bed-length balancing and generate a geologic reconstruction of the margin. Results show the section of the margin spanning from 3-23km from the deformation front has experienced 27.5% shortening, assuming the interpreted horizons were initially flat and continuous. The individual values for percent shortening are not consistent across the margin but distributed into two zones each with progressively increasing strain in the landward direction. Zone 2 (landward) begins with a percent shortening for S8 at 22% and linearly decreases to 2% shortening as you move seaward to S4. The Zone 1-2 boundary is marked by a slope break coinciding with an increase in percent shortening (S3,15%) followed by less shortening seaward (9%, 8%). Shortening and the associated strain is focused at the landward side of the two zones, within S3 and S8. We conclude that the Costa Rican margin has some degree of mechanical partitioning, with a notable discontinuity in strain patterns occurring 10 km from the trench.

Two-Dimensional Fluorescence Difference Spectroscopy of ZnO and Mg Composites in the Detection of Physiological Protein and RNA Interactions

PubMed Central

Hoffman, Amanda; Wu, Xiaotong; Wang, Jianjie; Brodeur, Amanda; Thomas, Rintu; Thakkar, Ravindra; Hadi, Halena; Glaspell, Garry P.; Duszynski, Molly; Wanekaya, Adam; DeLong, Robert K.

2017-01-01

Two-dimensional fluorescence difference spectroscopy (2-D FDS) was used to determine the unique spectral signatures of zinc oxide (ZnO), magnesium oxide (MgO), and 5% magnesium zinc oxide nanocomposite (5% Mg/ZnO) and was then used to demonstrate the change in spectral signature that occurs when physiologically important proteins, such as angiotensin-converting enzyme (ACE) and ribonuclease A (RNase A), interact with ZnO nanoparticles (NPs). When RNase A is bound to 5% Mg/ZnO, the intensity is quenched, while the intensity is magnified and a significant shift is seen when torula yeast RNA (TYRNA) is bound to RNase A and 5% Mg/ZnO. The intensity of 5% Mg/ZnO is quenched also when thrombin and thrombin aptamer are bound to the nanocomposite. These data indicate that RNA–protein interaction can occur unimpeded on the surface of NPs, which was confirmed by gel electrophoresis, and importantly that the change in fluorescence excitation, emission, and intensity shown by 2-D FDS may indicate specificity of biomolecular interactions. PMID:29244716

Anarchy with linear and bilinear interactions

NASA Astrophysics Data System (ADS)

Da Rold, Leandro

2017-10-01

Composite Higgs models with anarchic partial compositeness require a scale of new physics O(10-100) TeV, with the bounds being dominated by the dipole moments and ɛ K . The presence of anarchic bilinear interactions can change this picture. We show a solution to the SM flavor puzzle where the electron and the Right-handed quarks of the first generation have negligible linear interactions, and the bilinear interactions account for most of their masses, whereas the other chiral fermions follow a similar pattern to anarchic partial compositeness. We compute the bounds from flavor and CP violation and show that neutron and electron dipole moments, as well as ɛ K and μ → eγ, are compatible with a new physics scale below the TeV. Δ F = 2 operators involving Left-handed quarks and Δ F = 1 operators with d L give the most stringent bounds in this scenario. Their Wilson coefficients have the same origin as in anarchic partial compositeness, requiring the masses of the new states to be larger than O(6-7) TeV.

The QCD mass gap and quark deconfinement scales as mass bounds in strong gravity

NASA Astrophysics Data System (ADS)

Burikham, Piyabut; Harko, Tiberiu; Lake, Matthew J.

2017-11-01

Though not a part of mainstream physics, Salam's theory of strong gravity remains a viable effective model for the description of strong interactions in the gauge singlet sector of QCD, capable of producing particle confinement and asymptotic freedom, but not of reproducing interactions involving SU(3) color charge. It may therefore be used to explore the stability and confinement of gauge singlet hadrons, though not to describe scattering processes that require color interactions. It is a two-tensor theory of both strong interactions and gravity, in which the strong tensor field is governed by equations formally identical to the Einstein equations, apart from the coupling parameter, which is of order 1 {GeV}^{-1}. We revisit the strong gravity theory and investigate the strong gravity field equations in the presence of a mixing term which induces an effective strong cosmological constant, Λ f. This introduces a strong de Sitter radius for strongly interacting fermions, producing a confining bubble, which allows us to identify Λ f with the `bag constant' of the MIT bag model, B ˜eq 2 × 10^{14} {g} {cm}^{-3}. Assuming a static, spherically symmetric geometry, we derive the strong gravity TOV equation, which describes the equilibrium properties of compact hadronic objects. From this, we determine the generalized Buchdahl inequalities for a strong gravity `particle', giving rise to upper and lower bounds on the mass/radius ratio of stable, compact, strongly interacting objects. We show, explicitly, that the existence of the lower mass bound is induced by the presence of Λ _f, producing a mass gap, and that the upper bound corresponds to a deconfinement phase transition. The physical implications of our results for holographic duality in the context of the AdS/QCD and dS/QCD correspondences are also discussed.

Control of the Ability of Profilin to Bind and Facilitate Nucleotide Exchange from G-actin*

PubMed Central

Wen, Kuo-Kuang; McKane, Melissa; Houtman, Jon C. D.; Rubenstein, Peter A.

2008-01-01

A major factor in profilin regulation of actin cytoskeletal dynamics is its facilitation of G-actin nucleotide exchange. However, the mechanism of this facilitation is unknown. We studied the interaction of yeast (YPF) and human profilin 1 (HPF1) with yeast and mammalian skeletal muscle actins. Homologous pairs (YPF and yeast actin, HPF1 and muscle actin) bound more tightly to one another than heterologous pairs. However, with saturating profilin, HPF1 caused a faster etheno-ATP exchange with both yeast and muscle actins than did YPF. Based on the -fold change in ATP exchange rate/Kd, however, the homologous pairs are more efficient than the heterologous pairs. Thus, strength of binding of profilin to actin and nucleotide exchange rate are not tightly coupled. Actin/HPF interactions were entropically driven, whereas YPF interactions were enthalpically driven. Hybrid yeast actins containing subdomain 1 (sub1) or subdomain 1 and 2 (sub12) muscle actin residues bound more weakly to YPF than did yeast actin (Kd = 2 μm versus 0.6 μm). These hybrids bound even more weakly to HPF than did yeast actin (Kd = 5 μm versus 3.2 μm). sub1/YPF interactions were entropically driven, whereas the sub12/YPF binding was enthalpically driven. Compared with WT yeast actin, YPF binding to sub1 occurred with a 5 times faster koff and a 2 times faster kon. sub12 bound with a 3 times faster koff and a 1.5 times slower kon. Profilin controls the energetics of its interaction with nonhybrid actin, but interactions between actin subdomains 1 and 2 affect the topography of the profilin binding site. PMID:18223293

Single particle tracking with sterol modulation reveals the cholesterol-mediated diffusion properties of integrin receptors.

PubMed

Arora, Neha; Syed, Aleem; Sander, Suzanne; Smith, Emily A

2014-10-07

A combination of sterol modulation with cyclodextrins plus fluorescence microscopy revealed a biophysical mechanism behind cholesterol's influence on the diffusion of a ubiquitous class of receptors called integrins. The heterogeneous diffusion of integrins bound to ligand-coated quantum dots was measured using single particle tracking (SPT), and the ensemble changes in integrin diffusion were measured by fluorescence recovery after photobleaching (FRAP). A 25 ± 1% reduction of membrane cholesterol resulted in three significant changes to the diffusion of ligand-bound αPS2CβPS integrins as measured by SPT. There was a 23% increase in ligand-bound mobile integrins; there was a statistically significant increase in the average diffusion coefficient inside zones of confined diffusion, and histograms of confined integrin trajectories showed an increased frequency in the range of 0.1-1 μm(2) s(-1) and a decreased frequency in the 0.001-0.1 μm(2) s(-1) range. No statistical change was measured in the duration of confinement nor the size of confined zones. Restoring the cholesterol-depleted cells with exogenous cholesterol or exogenous epicholesterol resulted in similar diffusion properties. Epicholesterol differs from cholesterol in the orientation of a single hydroxyl group. The ability of epicholesterol to substitute for cholesterol suggests a biophysical mechanism for cholesterol's effect on integrin diffusion. Influences of bilayer thickness, viscosity and organization are discussed as possible explanations for the measured changes in integrin diffusion when the membrane cholesterol concentration is reduced.

Advanced computation for modeling fluid-solid dynamics in subduction zones

NASA Astrophysics Data System (ADS)

Spiegelman, Marc; Wilson, Cian; van Keken, Peter; Kelemen, Peter; Hacker, Bradley

2014-05-01

Arc volcanism associated with subduction is generally considered to occur by a process where hydrous fluids are released from the slab, interact with the overlying mantle wedge to produce silicate rich magmas which are then transported to the arc. However, the quantitative details of fluid release, migration, melt generation and transport in the wedge remain poorly understood. In particular, there are two fundamental observations that defy quantitative modeling. The first is the location of the volcanic front with respect to intermediate depth earthquakes (e.g. 100 ± 40 km). This observation is remarkably robust yet insensitive to subduction parameters. This contrasts with new estimates on the variability of fluid release in global subduction zones which suggest a significant sensitivity of fluid release to slab thermal conditions. Reconciling these results implies some mechanism for focusing fluids and/or melts toward the wedge corner. The second observation is the global existence of thermally hot erupted basalts and andesites that, if derived from flux melting of the mantle requires sub-arc mantle temperatures of 1300 degrees C over shallow pressures of 1-2 GPa comparable to P-T estimates for the dry solidus beneath mid-ocean ridges. These observations impose significant challenges for geodynamic models of subduction zones, and in particular for those that do not include the explicit transport of fluids and melts. We present a range of high-resolution models that include a more complete description of coupled fluid and solid mechanics (allowing the fluid to interact with solid rheological variations) together with rheologically consistent solution for temperature and solid flow. We discuss how successful these interactions are at focusing both fluids and hot solids to sub-arc regions worldwide. We also evaluate the efficacy of current wet melting parameterizations in these models. When driven by buoyancy alone, fluid migrates through the mantle wedge along nearly vertical trajectories. Only interactions with the solid flow at very low values of permeability or high values of fluid viscosity can cause deviations from this path. However, in a viscous, permeable medium, additional pressure gradients are generated by volumetric deformation due to variations in fluid flux. These pressure gradients can significantly modify the fluid flow paths. At shallow depths, compaction channels form along the rheological contrast with the overriding plate while in the mantle wedge itself porosity waves concentrate the fluid. When considering multiple, distributed sources of fluid, as predicted by thermodynamic models, interaction between layers in the slab itself can also cause significant focusing. As well as permeability, rheological controls and numerical regularizations place upper and lower bounds on the length-scales over which such interactions occur further modifying the degree of focusing seen. The wide range of behaviors described here is modeled using TerraFERMA (the Transparent Finite Element Rapid Model Assembler), which harnesses the advanced computational libraries FEniCS, PETSc and SPuD to provide the a flexible computational framework for exploring coupled multi-physics problems.

Three-dimensional modeling of pull-apart basins: implications for the tectonics of the Dead Sea Basin

USGS Publications Warehouse

Katzman, Rafael; ten Brink, Uri S.; Lin, Jian

1995-01-01

We model the three-dimensional (3-D) crustal deformation in a deep pull-apart basin as a result of relative plate motion along a transform system and compare the results to the tectonics of the Dead Sea Basin. The brittle upper crust is modeled by a boundary element technique as an elastic block, broken by two en echelon semi-infinite vertical faults. The deformation is caused by a horizontal displacement that is imposed everywhere at the bottom of the block except in a stress-free “shear zone” in the vicinity of the fault zone. The bottom displacement represents the regional relative plate motion. Results show that the basin deformation depends critically on the width of the shear zone and on the amount of overlap between basin-bounding faults. As the width of the shear zone increases, the depth of the basin decreases, the rotation around a vertical axis near the fault tips decreases, and the basin shape (the distribution of subsidence normalized by the maximum subsidence) becomes broader. In contrast, two-dimensional plane stress modeling predicts a basin shape that is independent of the width of the shear zone. Our models also predict full-graben profiles within the overlapped region between bounding faults and half-graben shapes elsewhere. Increasing overlap also decreases uplift near the fault tips and rotation of blocks within the basin. We suggest that the observed structure of the Dead Sea Basin can be described by a 3-D model having a large overlap (more than 30 km) that probably increased as the basin evolved as a result of a stable shear motion that was distributed laterally over 20 to 40 km.

Hierarchy of stroma-derived factors in supporting growth of stroma-dependent hemopoietic cells: membrane-bound SCF is sufficient to confer stroma competence to epithelial cells.

PubMed

Friel, Jutta; Itoh, Katsuhiko; Bergholz, Ulla; Jücker, Manfred; Stocking, Carol; Harrison, Paul; Ostertag, Wolfram

2002-03-01

Hemopoiesis takes place in a microenvironment where hemopoietic cells are closely associated with stroma by various interactions. Stroma coregulates the proliferation and differentiation of hemopoietic cells. Stroma-hemopoietic-cell contact can be supported by locally produced membrane associated growth factors. The stroma derived growth factor, stem cell factor (SCF) is important in hemopoiesis. We examined the different biological interactions of membrane bound and soluble SCF with human hemopoietic cells expressing the SCF receptor, c-kit. To analyze the function of the SCF isoforms in inducing the proliferation of hemopoietic TF1 or Cord blood (CB) CD34+ cells we used stroma cell lines that differ in their presentation of no SCF, membrane SCF, or soluble SCF. We established a new coculture system using an epithelial cell line that excludes potential interfering effects with other known stroma encoded hemopoietic growth factors. We show that soluble SCF, in absence of membrane-bound SCF, inhibits long term clonal growth of primary or established CD34+ hemopoietic cells, whereas membrane-inserted SCF "dominantly" induces long term proliferation of these cells. We demonstrate a hierarchy of these SCF isoforms in the interaction of stroma with hemopoietic TF1 cells. Membrane-bound SCF is "dominant" over soluble SCF, whereas soluble SCF acts epistatically in interacting with hemopoietic cells compared with other stroma derived factors present in SCF deficient stroma. A hierarchy of stroma cell lines can be arranged according to their presentation of membrane SCF or soluble SCF. In our model system, membrane-bound SCF expression is sufficient to confer stroma properties to an epithelial cell line but soluble SCF does not.

The role of fluid mobility in the development of shale weathering profiles: Direct observations from a vadose zone monitoring system

NASA Astrophysics Data System (ADS)

Druhan, J. L.; Wang, J.; Cargill, S.; Murphy, C.; Tune, A. K.; Dietrich, W. E.; Rempe, D.

2017-12-01

Extensive effort has focused on resolving the contribution of weathering reactions to the transfer of mass over scales ranging from individual hillslope weathering profiles, across local watersheds, to continental drainage networks. A persistent limitation in quantifying these fluxes is the variability in fluid flowpaths through the subsurface, which may alter the extent of chemical weathering relative to that expected from idealized homogenous conditions. In the past decade, the consequence of fluid travel time on solute flux has been recognized as a key complexity in the interpretation of solute concentrations, particularly in upland watersheds characterized by fracture flowpaths, as is typical of shale-dominated landscapes. Though recent studies have suggested a variety of models for solute generation in such dual (matrix and fracture flow) domain systems, a central impediment to advancing prediction is the lack of direct observations. Here, we report solute chemistry as a function of depth across an 18 m thick vadose zone of weathered argillite (shale) in the Eel River Critical Zone Observatory (ERCZO) using novel sub-horizontal distributed samplers (Vadose Zone Monitoring System). We contrast a year of major and trace ion chemistry obtained from water samples collected approximately biweekly using two complementary sampling systems, one applying active pressure to extract matrix-bound pore fluid, and the other using a passive collection method to extract freely draining water. Precipitation falling during the winter rainy season passes through this vadose zone, causing increased rock moisture that is subsequently depleted by transpiring trees. Solute concentrations reflect these seasonal changes, and, surprisingly, normalized ion ratios span the full range of values reported for the world's largest rivers. Notably, for some major cations, freely draining water is consistently less concentrated than matrix-bound water, and the composition of vadose zone water is consistently more variable than the underlying groundwater. Dual domain 1D reactive transport simulations demonstrate that even a simplified scoping model for solute concentrations across fractured shale systems requires a non-uniform fluid travel time to reasonably reproduce observations.

Interaction of melanin with proteins--the importance of an acidic intramelanosomal pH.

PubMed

Mani, I; Sharma, V; Tamboli, I; Raman, G

2001-06-01

Melanin is a highly irregular heteropolymer consisting of monomeric units derived from the enzymatic oxidation of the amino acid tyrosine. The process of melanin formation takes place in specialized acidic organelles (melanosomes) in melanocytes. The process of melanin polymerization requires an alkaline pH in vitro, and therefore, the purpose of an acidic environment in vivo remains a mystery. It is known that melanin is always bound to protein in vivo. It is also seen that polymerization in vitro at an acidic pH necessarily requires the presence of proteins. The effect of various model proteins on melanin synthesis and their interaction with melanin was studied. It was seen that many proteins could increase melanin synthesis at an acidic pH, and that different proteins resulted in the formation of different states of melanin, i.e., a precipitate or a soluble, protein-bound form. We also present evidence to show that soluble protein-bound melanin is present in vivo (in B16 cells as well as in B16 melanoma tissue). An acidic pH appeared to be necessary to ensure the formation of a uniform, very high molecular weight melano-protein complex. The interaction between melanin and proteins appears to be largely charge-dependent as evidenced by zeta potential measurements, and this interaction is also increased in an acidic pH. Thus, it appears that an acidic intramelanosomal pH is essential to ensure maximum interaction between protein and melanin, and also to ensure that all the melanin formed is protein-bound.

Adaptive NN tracking control of uncertain nonlinear discrete-time systems with nonaffine dead-zone input.

PubMed

Liu, Yan-Jun; Tong, Shaocheng

2015-03-01

In the paper, an adaptive tracking control design is studied for a class of nonlinear discrete-time systems with dead-zone input. The considered systems are of the nonaffine pure-feedback form and the dead-zone input appears nonlinearly in the systems. The contributions of the paper are that: 1) it is for the first time to investigate the control problem for this class of discrete-time systems with dead-zone; 2) there are major difficulties for stabilizing such systems and in order to overcome the difficulties, the systems are transformed into an n-step-ahead predictor but nonaffine function is still existent; and 3) an adaptive compensative term is constructed to compensate for the parameters of the dead-zone. The neural networks are used to approximate the unknown functions in the transformed systems. Based on the Lyapunov theory, it is proven that all the signals in the closed-loop system are semi-globally uniformly ultimately bounded and the tracking error converges to a small neighborhood of zero. Two simulation examples are provided to verify the effectiveness of the control approach in the paper.

Permeability and seismic velocity anisotropy across a ductile-brittle fault zone in crystalline rock

NASA Astrophysics Data System (ADS)

Wenning, Quinn C.; Madonna, Claudio; de Haller, Antoine; Burg, Jean-Pierre

2018-05-01

This study characterizes the elastic and fluid flow properties systematically across a ductile-brittle fault zone in crystalline rock at the Grimsel Test Site underground research laboratory. Anisotropic seismic velocities and permeability measured every 0.1 m in the 0.7 m across the transition zone from the host Grimsel granodiorite to the mylonitic core show that foliation-parallel P- and S-wave velocities systematically increase from the host rock towards the mylonitic core, while permeability is reduced nearest to the mylonitic core. The results suggest that although brittle deformation has persisted in the recent evolution, antecedent ductile fabric continues to control the matrix elastic and fluid flow properties outside the mylonitic core. The juxtaposition of the ductile strain zone next to the brittle zone, which is bounded inside the two mylonitic cores, causes a significant elastic, mechanical, and fluid flow heterogeneity, which has important implications for crustal deformation and fluid flow and for the exploitation and use of geothermal energy and geologic waste storage. The results illustrate how physical characteristics of faults in crystalline rocks change in fault zones during the ductile to brittle transitions.

Estimating the Turn-around Radii of Six Isolated Galaxy Groups in the Local Universe

NASA Astrophysics Data System (ADS)

Lee, Jounghun

2018-03-01

Estimates of the turn-around radii of six isolated galaxy groups in the nearby universe are presented. From the Tenth Data Release of the Sloan Digital Sky Survey, we first select those isolated galaxy groups at redshifts z ≤ 0.05 in the mass range [0.3–1] × {10}14 {h}-1 {M}ȯ whose nearest-neighbor groups are located at distances larger than 15 times their virial radii. Then, we search for a gravitationally interacting web-like structure around each isolated group, which appears as an inclined streak pattern in the anisotropic spatial distribution of the neighboring field galaxies. Out of 59 isolated groups, only seven are found to possess such web-like structures in their neighbor zones, but one of them turns out to be NGC 5353/4, whose turn-around radius was already measured in a previous work and was thus excluded from our analysis. Applying the Turn-around Radius Estimator algorithm devised by Lee et al. to the identified web-like structures of the remaining six target groups, we determine their turn-around radii and show that three out of the six targets have larger turn-around radii than the spherical bound limit predicted by Planck cosmology. We discuss possible sources of the apparent violations of the three groups, including the underestimated spherical bound limit due to the approximation of the turn-around mass by the virial mass.

29. AERIAL VIEW OF THE ROCKY FLATS PLANT LOOKING SOUTH. ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

29. AERIAL VIEW OF THE ROCKY FLATS PLANT LOOKING SOUTH. IN 1983, THE PERIMETER SECURITY ZONE SURROUNDING THE PLUTONIUM OPERATIONS WAS COMPLETED. IT CONSISTED OF A DOUBLE PERIMETER FENCE, CLOSED CIRCUIT TELEVISIONS, ALARMS, AND AN UNINTERRUPTED POWER SUPPLY (7/29/83). - Rocky Flats Plant, Bounded by Indiana Street & Routes 93, 128 & 72, Golden, Jefferson County, CO

75 FR 33999 - Safety Zone; Fourth of July Fireworks Event, Cape Charles City Harbor, Cape Charles, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-16

...: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a 420-foot..., and falling hot embers or other debris, vessel traffic will be temporarily restricted within 420 feet... navigable waters of the Cape Charles City Harbor within the area bounded by a 420-foot radius circle...

Including the Other: Regulation of the Human Rights of Mobile Students in a Nation-Bound World

ERIC Educational Resources Information Center

Marginson, Simon

2012-01-01

The world's three million cross-border international students are located in a "gray zone" of regulation with incomplete human rights, security and capabilities. Like other mobile persons such as short-term business and labour entrants, and refugees, students located on foreign soil do not enjoy the same protections and entitlements as…

33 CFR 167.1302 - In the approaches to the Strait of Juan de Fuca: Southwestern approach.

Code of Federal Regulations, 2011 CFR

2011-07-01

... of Juan de Fuca: Southwestern approach. 167.1302 Section 167.1302 Navigation and Navigable Waters....1302 In the approaches to the Strait of Juan de Fuca: Southwestern approach. In the southwestern approach to the Strait of Juan de Fuca, the following are established: (a) A separation zone bounded by a...

BKT phase transition in a 2D system with long-range dipole-dipole interaction

NASA Astrophysics Data System (ADS)

Fedichev, P. O.; Men'shikov, L. I.

2012-01-01

We consider phase transitions in 2D XY-like systems with long-range dipole-dipole interactions and demonstrate that BKT-type phase transition always occurs separating the ordered (ferroelectric) and the disordered (paraelectric) phases. The low-temperature phase corresponds to a thermal state with bound vortex-antivortex pairs characterized by linear attraction at large distances. Using the Maier-Schwabl topological charge model, we show that bound vortex pairs polarize and screen the vortex-antivortex interaction, leaving only the logarithmic attraction at sufficiently large separations between the vortices. At higher temperatures the pairs dissociate and the phase transition similar to BKT occurs, though at a larger temperature than in a system without the dipole-dipole interaction.

Aquifer response to stream-stage and recharge variations. I. Analytical step-response functions

USGS Publications Warehouse

Moench, A.F.; Barlow, P.M.

2000-01-01

Laplace transform step-response functions are presented for various homogeneous confined and leaky aquifer types and for anisotropic, homogeneous unconfined aquifers interacting with perennial streams. Flow is one-dimensional, perpendicular to the stream in the confined and leaky aquifers, and two-dimensional in a plane perpendicular to the stream in the water-table aquifers. The stream is assumed to penetrate the full thickness of the aquifer. The aquifers may be semi-infinite or finite in width and may or may not be bounded at the stream by a semipervious streambank. The solutions are presented in a unified manner so that mathematical relations among the various aquifer configurations are clearly demonstrated. The Laplace transform solutions are inverted numerically to obtain the real-time step-response functions for use in the convolution (or superposition) integral. To maintain linearity in the case of unconfined aquifers, fluctuations in the elevation of the water table are assumed to be small relative to the saturated thickness, and vertical flow into or out of the zone above the water table is assumed to occur instantaneously. Effects of hysteresis in the moisture distribution above the water table are therefore neglected. Graphical comparisons of the new solutions are made with known closed-form solutions.Laplace transform step-response functions are presented for various homogeneous confined and leaky aquifer types and for anisotropic, homogeneous unconfined aquifers interacting with perennial streams. Flow is one-dimensional, perpendicular to the stream in the confined and leaky aquifers, and two-dimensional in a plane perpendicular to the stream in the water-table aquifers. The stream is assumed to penetrate the full thickness of the aquifer. The aquifers may be semi-infinite or finite in width and may or may not be bounded at the stream by a semipervious streambank. The solutions are presented in a unified manner so that mathematical relations among the various aquifer configurations are clearly demonstrated. The Laplace transform solutions are inverted numerically to obtain the real-time step-response functions for use in the convolution (or superposition) integral. To maintain linearity in the case of unconfined aquifers, fluctuations in the elevation of the water table are assumed to be small relative to the saturated thickness, and vertical flow into or out of the zone above the water table is assumed to occur instantaneously. Effects of hysteresis in the moisture distribution above the water table are therefore neglected. Graphical comparisons of the new solutions are made with known closed-form solutions.

Formation of mercury sulfide from Hg(II)−thiolate complexes in natural organic matter

USGS Publications Warehouse

Alain Manceau,; Cyprien Lemouchi,; Mironel Enescu,; Anne-Claire Gaillot,; Martine Lanson,; Valerie Magnin,; Pieter Glatzel,; Poulin, Brett; Ryan, Joseph N.; Aiken, George R.; Isabelle Gautier-Lunea,; Kathryn L. Nagy,

2015-01-01

Methylmercury is the environmental form of neurotoxic mercury that is biomagnified in the food chain. Methylation rates are reduced when the metal is sequestered in crystalline mercury sulfides or bound to thiol groups in macromolecular natural organic matter. Mercury sulfide minerals are known to nucleate in anoxic zones, by reaction of the thiol-bound mercury with biogenic sulfide, but not in oxic environments. We present experimental evidence that mercury sulfide forms from thiol-bound mercury alone in aqueous dark systems in contact with air. The maximum amount of nanoparticulate mercury sulfide relative to thiol-bound mercury obtained by reacting dissolved mercury and soil organic matter matches that detected in the organic horizon of a contaminated soil situated downstream from Oak Ridge, TN, in the United States. The nearly identical ratios of the two forms of mercury in field and experimental systems suggest a common reaction mechanism for nucleating the mineral. We identified a chemical reaction mechanism that is thermodynamically favorable in which thiol-bound mercury polymerizes to mercury–sulfur clusters. The clusters form by elimination of sulfur from the thiol complexes via breaking of mercury–sulfur bonds as in an alkylation reaction. Addition of sulfide is not required. This nucleation mechanism provides one explanation for how mercury may be immobilized, and eventually sequestered, in oxygenated surface environments.

Shear zone junctions: Of zippers and freeways

NASA Astrophysics Data System (ADS)

Passchier, Cees W.; Platt, John P.

2017-02-01

Ductile shear zones are commonly treated as straight high-strain domains with uniform shear sense and characteristic curved foliation trails, bounded by non-deforming wall rock. Many shear zones, however, are branched, and if movement on such branches is contemporaneous, the resulting shape can be complicated and lead to unusual shear sense arrangement and foliation geometries in the wall rock. For Y-shaped shear zone triple junctions with three joining branches and transport direction at a high angle to the branchline, only eight basic types of junction are thought to be stable and to produce significant displacement. The simplest type, called freeway junctions, have similar shear sense in all three branches. The other types show joining or separating behaviour of shear zone branches similar to the action of a zipper. Such junctions may have shear zone branches that join to form a single branch (closing zipper junction), or a single shear zone that splits to form two branches, (opening zipper junction). All categories of shear zone junctions show characteristic foliation patterns and deflection of markers in the wall rock. Closing zipper junctions are unusual, since they form a non-active zone with opposite deflection of foliations in the wall rock known as an extraction fault or wake. Shear zipper junctions can form domains of overprinting shear sense along their flanks. A small and large field example are given from NE Spain and Eastern Anatolia. The geometry of more complex, 3D shear zone junctions with slip parallel and oblique to the branchline is briefly discussed.

The travel-time ellipse: An approximate zone of transport

USGS Publications Warehouse

Almendinger, J.E.

1994-01-01

A zone of transport for a well is defined as the area in the horizontal plane bounded by a contour of equal ground-water travel time to the well. For short distances and ground-water travel times near a well, the potentiometric surface may be simulated analytically as that for a fully penetrating well in a uniform flow field. The zone of transport for this configuration is nearly elliptical. A simple method is derived to calculate a travel-time ellipse that approximates the zone of transport for a well in a uniform flow field. The travel-time ellipse was nearly congruent with the exact solution for the theoretical zone of transport for ground-water travel times of at least 10 years and for aquifer property values appropriate for southeastern Minnesota. For distances and travel times approaching infinity, however, the ellipse becomes slightly wider at its midpoint and narrower near its upgradient boundary than the theoretical zone of transport. The travel-time ellipse also may be used to simulate the plume area surrounding an injection well. However, the travel-time ellipse is an approximation that does not account for the effect of dispersion in enlarging the true area of an injection plume or zone of transport; hence, caution is advised in the use and interpretation of this simple construction.

Goldstonic pseudoscalar mesons in Bethe-Salpeter-inspired setting

NASA Astrophysics Data System (ADS)

Lucha, Wolfgang; Schöberl, Franz F.

2018-03-01

For a two-particle bound-state equation closer to its Bethe-Salpeter origins than Salpeter’s equation, with effective interaction kernel deliberately forged such as to ensure, in the limit of zero mass of the bound-state constituents, the vanishing of the arising bound-state mass, we scrutinize the emerging features of the lightest pseudoscalar mesons for their agreement with the behavior predicted by a generalization of the Gell-Mann-Oakes-Renner relation.

Binding of the B D D ¯ and B D D systems

NASA Astrophysics Data System (ADS)

Dias, J. M.; Debastiani, V. R.; Roca, L.; Sakai, S.; Oset, E.

2017-11-01

We study theoretically the B D D ¯ and B D D systems to see if they allow for possible bound or resonant states. The three-body interaction is evaluated implementing the fixed center approximation to the Faddeev equations which considers the interaction of a D or D ¯ particle with the components of a B D cluster, previously proved to form a bound state. We find an I (JP)=1 /2 (0-) bound state for the B D D ¯ system at an energy around 8925-8985 MeV within uncertainties, which would correspond to a bottom hidden-charm meson. In contrast, for the B D D system, which would be bottom double-charm and hence manifestly exotic, we have found hints of a bound state in the energy region 8935-8985 MeV, but the results are not stable under the uncertainties of the model, and we cannot assure, nor rule out, the possibility of a B D D three-body state.

Self-bound droplets of a dilute magnetic quantum liquid

NASA Astrophysics Data System (ADS)

Schmitt, Matthias; Wenzel, Matthias; Böttcher, Fabian; Ferrier-Barbut, Igor; Pfau, Tilman

2016-11-01

Self-bound many-body systems are formed through a balance of attractive and repulsive forces and occur in many physical scenarios. Liquid droplets are an example of a self-bound system, formed by a balance of the mutual attractive and repulsive forces that derive from different components of the inter-particle potential. It has been suggested that self-bound ensembles of ultracold atoms should exist for atom number densities that are 108 times lower than in a helium droplet, which is formed from a dense quantum liquid. However, such ensembles have been elusive up to now because they require forces other than the usual zero-range contact interaction, which is either attractive or repulsive but never both. On the basis of the recent finding that an unstable bosonic dipolar gas can be stabilized by a repulsive many-body term, it was predicted that three-dimensional self-bound quantum droplets of magnetic atoms should exist. Here we report the observation of such droplets in a trap-free levitation field. We find that this dilute magnetic quantum liquid requires a minimum, critical number of atoms, below which the liquid evaporates into an expanding gas as a result of the quantum pressure of the individual constituents. Consequently, around this critical atom number we observe an interaction-driven phase transition between a gas and a self-bound liquid in the quantum degenerate regime with ultracold atoms. These droplets are the dilute counterpart of strongly correlated self-bound systems such as atomic nuclei and helium droplets.

Self-bound droplets of a dilute magnetic quantum liquid.

PubMed

Schmitt, Matthias; Wenzel, Matthias; Böttcher, Fabian; Ferrier-Barbut, Igor; Pfau, Tilman

2016-11-10

Self-bound many-body systems are formed through a balance of attractive and repulsive forces and occur in many physical scenarios. Liquid droplets are an example of a self-bound system, formed by a balance of the mutual attractive and repulsive forces that derive from different components of the inter-particle potential. It has been suggested that self-bound ensembles of ultracold atoms should exist for atom number densities that are 10 8 times lower than in a helium droplet, which is formed from a dense quantum liquid. However, such ensembles have been elusive up to now because they require forces other than the usual zero-range contact interaction, which is either attractive or repulsive but never both. On the basis of the recent finding that an unstable bosonic dipolar gas can be stabilized by a repulsive many-body term, it was predicted that three-dimensional self-bound quantum droplets of magnetic atoms should exist. Here we report the observation of such droplets in a trap-free levitation field. We find that this dilute magnetic quantum liquid requires a minimum, critical number of atoms, below which the liquid evaporates into an expanding gas as a result of the quantum pressure of the individual constituents. Consequently, around this critical atom number we observe an interaction-driven phase transition between a gas and a self-bound liquid in the quantum degenerate regime with ultracold atoms. These droplets are the dilute counterpart of strongly correlated self-bound systems such as atomic nuclei and helium droplets.

Florida: A Jurassic transform plate boundary

USGS Publications Warehouse

Klitgord, Kim D.; Popenoe, Peter; Schouten, Hans

1984-01-01

Magnetic, gravity, seismic, and deep drill hole data integrated with plate tectonic reconstructions substantiate the existence of a transform plate boundary across southern Florida during the Jurassic. On the basis of this integrated suite of data the pre-Cretaceous Florida-Bahamas region can be divided into the pre-Jurassic North American plate, Jurassic marginal rift basins, and a broad Jurassic transform zone including stranded blocks of pre-Mesozoic continental crust. Major tectonic units include the Suwannee basin in northern Florida containing Paleozoic sedimentary rocks, a central Florida basement complex of Paleozoic age crystalline rock, the west Florida platform composed of stranded blocks of continental crust, the south Georgia rift containing Triassic sedimentary rocks which overlie block-faulted Suwannee basin sedimentary rocks, the Late Triassic-Jurassic age Apalachicola rift basin, and the Jurassic age south Florida, Bahamas, and Blake Plateau marginal rift basins. The major tectonic units are bounded by basement hinge zones and fracture zones (FZ). The basement hinge zone represents the block-faulted edge of the North American plate, separating Paleozoic and older crustal rocks from Jurassic rifted crust beneath the marginal basins. Fracture zones separate Mesozoic marginal sedimentary basins and include the Blake Spur FZ, Jacksonville FZ, Bahamas FZ, and Cuba FZ, bounding the Blake Plateau, Bahamas, south Florida, and southeastern Gulf of Mexico basins. The Bahamas FZ is the most important of all these features because its northwest extension coincides with the Gulf basin marginal fault zone, forming the southern edge of the North American plate during the Jurassic. The limited space between the North American and the South American/African plates requires that the Jurassic transform zone, connecting the Central Atlantic and the Gulf of Mexico spreading systems, was located between the Bahamas and Cuba FZ's in the region of southern Florida. Our plate reconstructions combined with chronostratigraphic and lithostratigraphic information for the Gulf of Mexico, southern Florida, and the Bahamas indicate that the gulf was sealed off from the Atlantic waters until Callovian time by an elevated Florida-Bahamas region. Restricted influx of waters started in Callovian as a plate reorganization, and increased plate separation between North America and South America/Africa produced waterways into the Gulf of Mexico from the Pacific and possibly from the Atlantic.

Direct interactions of OCA-B and TFII-I regulate immunoglobulin heavy-chain gene transcription by facilitating enhancer-promoter communication.

PubMed

Ren, Xiaodi; Siegel, Rachael; Kim, Unkyu; Roeder, Robert G

2011-05-06

B cell-specific coactivator OCA-B, together with Oct-1/2, binds to octamer sites in promoters and enhancers to activate transcription of immunoglobulin (Ig) genes, although the mechanisms underlying their roles in enhancer-promoter communication are unknown. Here, we demonstrate a direct interaction of OCA-B with transcription factor TFII-I, which binds to DICE elements in Igh promoters, that affects transcription at two levels. First, OCA-B relieves HDAC3-mediated Igh promoter repression by competing with HDAC3 for binding to promoter-bound TFII-I. Second, and most importantly, Igh 3' enhancer-bound OCA-B and promoter-bound TFII-I mediate promoter-enhancer interactions, in both cis and trans, that are important for Igh transcription. These and other results reveal an important function for OCA-B in Igh 3' enhancer function in vivo and strongly favor an enhancer mechanism involving looping and facilitated factor recruitment rather than a tracking mechanism. Copyright © 2011 Elsevier Inc. All rights reserved.

Direct interactions of OCA-B and TFII-I regulate immunoglobulin heavy-chain gene transcription by facilitating enhancer-promoter communication

PubMed Central

Ren, Xiaodi; Siegel, Rachael; Kim, Unkyu; Roeder, Robert G.

2011-01-01

Summary B cell-specific coactivator OCA-B, together with Oct-1/2, binds to octamer sites in promoters and enhancers to activate transcription of immunoglobulin (Ig) genes, although the mechanisms underlying their roles in enhancer-promoter communication are unknown. Here, we demonstrate a direct interaction of OCA-B with transcription factor TFII-I, which binds to DICE elements in IgH promoters, that affects transcription at two levels. First, OCA-B relieves HDAC3-mediated IgH promoter repression by competing with HDAC3 for binding to promoter-bound TFII-I. Second, and most importantly, Igh 3′enhancer-bound OCA-B and promoter-bound TFII-I mediate promoter-enhancer interactions, in both cis and trans, that are important for Igh transcription. These and other results reveal an important function for OCA-B in Igh 3′enhancer function in vivo and strongly favor an enhancer mechanism involving looping and facilitated factor recruitment rather than a tracking mechanism. PMID:21549311

Energy Landscape and Transition State of Protein-Protein Association

NASA Astrophysics Data System (ADS)

Alsallaq, Ramzi; Zhou, Huan-Xiang

2006-11-01

Formation of a stereospecific protein complex is favored by specific interactions between two proteins but disfavored by the loss of translational and rotational freedom. Echoing the protein folding process, we have previously proposed a transition state for protein-protein association. Here we clarify the specification of the transition state by working with two toy models for protein association. The models demonstrate that a sharp transition between the bound state with numerous short-range interactions but restricted translation and rotational freedom and the unbound state with at most a small number of interactions but expanded configurational freedom. This transition sets the outer boundary of the bound state as well as the transition state for association. The energy landscape is funnel-like, with the deep well of the bound state surrounded by a broad shallow basin. This formalism of protein-protein association is applied to four protein-protein complexes, and is found to give accurate predictions for the effects of charge mutations and ionic strength on the association rates.

Castro ring zone: a 4,500-km2 fossil hydrothermal system in the Challis volcanic field, central Idaho.

USGS Publications Warehouse

Criss, R.E.; Ekren, E.B.; Hardyman, R.F.

1984-01-01

The largest fossil hydrothermal system occupying a 4500 km2 area in central Idaho is revealed by delta 18O studies. The remains of this meteoric-hydrothermal system are preserved within a sharply bounded, 15 km wide, 70-km-diameter annulus of low delta 18O rock (+2.0 to -8.8per mille) termed the Castro ring zone. The zone is centred on a less depleted (+4.5) core zone consisting of granitic rocks of the Castro pluton. This 700-km2 Eocene subvolcanic batholith has intruded, domed, and hydrothermally metamorphosed a thick sequence of Challis Volcanics, the stratigraphically low rocks in the 2000-km2 Van Horn Peak and the 1000-km2 Thunder Mountain cauldron complexes being most strongly altered. Less extreme 18O depletions occur in the youngest major ash-flow sheets of these complexes, indicating a vertical 18O gradient. Water/rock ratios of geothermal systems are surprisingly insensitive to the circulation scale.-L.-di H.

Impact of contact lens zone geometry and ocular optics on bifocal retinal image quality

PubMed Central

Bradley, Arthur; Nam, Jayoung; Xu, Renfeng; Harman, Leslie; Thibos, Larry

2014-01-01

Purpose To examine the separate and combined influences of zone geometry, pupil size, diffraction, apodisation and spherical aberration on the optical performance of concentric zonal bifocals. Methods Zonal bifocal pupil functions representing eye + ophthalmic correction were defined by interleaving wavefronts from separate optical zones of the bifocal. A two-zone design (a central circular inner zone surrounded by an annular outer-zone which is bounded by the pupil) and a five-zone design (a central small circular zone surrounded by four concentric annuli) were configured with programmable zone geometry, wavefront phase and pupil transmission characteristics. Using computational methods, we examined the effects of diffraction, Stiles Crawford apodisation, pupil size and spherical aberration on optical transfer functions for different target distances. Results Apodisation alters the relative weighting of each zone, and thus the balance of near and distance optical quality. When spherical aberration is included, the effective distance correction, add power and image quality depend on zone-geometry and Stiles Crawford Effect apodisation. When the outer zone width is narrow, diffraction limits the available image contrast when focused, but as pupil dilates and outer zone width increases, aberrations will limit the best achievable image quality. With two-zone designs, balancing near and distance image quality is not achieved with equal area inner and outer zones. With significant levels of spherical aberration, multi-zone designs effectively become multifocals. Conclusion Wave optics and pupil varying ocular optics significantly affect the imaging capabilities of different optical zones of concentric bifocals. With two-zone bifocal designs, diffraction, pupil apodisation spherical aberration, and zone size influence both the effective add power and the pupil size required to balance near and distance image quality. Five-zone bifocal designs achieve a high degree of pupil size independence, and thus will provide more consistent performance as pupil size varies with light level and convergence amplitude. PMID:24588552

Relating rheology to geometry in large-scale natural shear zones

NASA Astrophysics Data System (ADS)

Platt, John

2016-04-01

The geometry and width of the ductile roots of plate boundary scale faults are very poorly understood. Some field and geophysical data suggests widths of tens of km in the lower crust, possibly more in the upper mantle. Other observations suggest they are much narrower. Dip slip shear zones may flatten out and merge into zones of subhorizontal lower crustal or asthenospheric flow. The width of a ductile shear zone is simply related to relative velocity and strain rate. Strain rate is related to stress through the constitutive relationship. Can we constrain the stress, and do we understand the rheology of materials in ductile shear zones? A lot depends on how shear zones are initiated. If they are localized by pre-existing structures, width and/or rheology may be inherited, and we have too many variables. If shear zones are localized primarily by shear heating, initial shear stress has to be very high (> 1 GPa) to overcome conductive heat loss, and very large feedbacks (both positive and negative) make the system highly unstable. Microstructural weakening requires a minimum level of stress to cause deformation and damage in surrounding rock, thereby buffering the stress. Microstructural weakening leads to grain-size sensitive creep, for which we have constitutive laws, but these are complicated by phase mixing in polyphase materials, by viscous anisotropy, by hydration, and by changes in mineral assemblage. Here are some questions that need to be addressed. (1) If grain-size reduction by dynamic recrystallization results in a switch to grain-size sensitive creep (GSSC) in a stress-buffered shear zone, does dynamic recrystallization stop? Does grain growth set in? If grain-size is still controlled by dislocation processes, then the effective stress exponent for GSSC is 4-5, even though the dominant mechanism may be diffusion and/or grain-boundary sliding (GBS). (2) Is phase mixing in ultramylonites primarily a result of GBS + neighbour switching, creep cavitation and diffusion, or metamorphic reactions? (3) In two-phase / polyphase mixtures, does the strong phase generally form a load-bearing framework, favoring constant strain-rate (Voigt) bound behavior, or does the weak phase form through-going strain pathways, favoring constant stress (Reuss) bound behavior, or do the phases remain well mixed, favoring an intermediate behavior (e.g., Tullis et al model)? (4) How do we deal with the rheological effect of water? Is it simply an unconstrained variable in nature? Is the water fugacity model in flow laws adequate? (5) How can we better relate experimental results (often carried out at constant strain-rate, and not reaching microstructural steady state) to deformation in natural shear zones? Rheological observations on well-constrained natural shear zones are helping us answer some of these questions.

The influence of groundwater chemistry on arsenic concentrations and speciation in a quartz sand and gravel aquifer

USGS Publications Warehouse

Kent, D.B.; Fox, P.M.

2004-01-01

We examined the chemical reactions influencing dissolved concentrations, speciation, and transport of naturally occurring arsenic (As) in a shallow, sand and gravel aquifer with distinct geochemical zones resulting from land disposal of dilute sewage effluent. The principal geochemical zones were: (1) the uncontaminated zone above the sewage plume [350 ??M dissolved oxygen (DO), pH 5.9]; (2) the suboxic zone (5 ??M DO, pH 6.2, elevated concentrations of sewage-derived phosphate and nitrate); and (3) the anoxic zone [dissolved iron(II) 100-300 ??M, pH 6.5-6.9, elevated concentrations of sewage-derived phosphate]. Sediments are comprised of greater than 90% quartz but the surfaces of quartz and other mineral grains are coated with nanometer-size iron (Fe) and aluminum (Al) oxides and/or silicates, which control the adsorption properties of the sediments. Uncontaminated groundwater with added phosphate (620 ??M) was pumped into the uncontaminated zone while samples were collected 0.3 m above the injection point. Concentrations of As(V) increased from below detection (0.005 ??M) to a maximum of 0.07 ??M during breakthrough of phosphate at the sampling port; As(III) concentrations remained below detection. These results are consistent with the hypothesis that naturally occurring As(V) adsorbed to constituents of the coatings on grain surfaces was desorbed by phosphate in the injected groundwater. Also consistent with this hypothesis, vertical profiles of groundwater chemistry measured prior to the tracer test showed that dissolved As(V) concentrations increased along with dissolved phosphate from below detection in the uncontaminated zone to approximately 0.07 and 70 ??M, respectively, in the suboxic zone. Concentrations of As(III) were below detection in both zones. The anoxic zone had approximately 0.07 ??M As(V) but also had As(III) concentrations of 0.07-0.14 ??M, suggesting that release of As bound to sediment grains occurred by desorption by phosphate, reductive dissolution of Fe oxides, and reduction of As(V) to As(III), which adsorbs only weakly to the Fe-oxide-depleted material in the coatings. Results of reductive extractions of the sediments suggest that As associated with the coatings was relatively uniformly distributed at approximately 1 nmol/g of sediment (equivalent to 0.075 ppm As) and comprised 20%-50% of the total As in the sediments, determined from oxidative extractions. Quartz sand aquifers provide high-quality drinking water but can become contaminated when naturally occurring arsenic bound to Fe and Al oxides or silicates on sediment surfaces is released by desorption and dissolution of Fe oxides in response to changing chemical conditions. ?? 2004 American Institute of Physics.

Passive bookshelf faulting driven by gravitational spreading as the cause of the tiger-stripe-fracture formation and development in the South Polar Terrain of Enceladus

NASA Astrophysics Data System (ADS)

Yin, A.; Pappalardo, R. T.

2013-12-01

Detailed photogeologic mapping of the tiger-stripe fractures in the South Polar Terrain (SPT) of Enceladus indicates that these structures are left-slip faults and terminate at hook-shaped fold-thrust zones and/or Y-shaped horsetail splay-fault zones. The semi-square-shaped tectonic domain that hosts the tiger-stripe faults is bounded by right-slip and left-slip faults on the north and south edges and fold-thrust and extensional zones on the western and eastern edges. We explain the above observations by a passive bookshelf-faulting model in which individual tiger-stripe faults are bounded by deformable wall rocks accommodating distributed deformation. Based on topographic data, we suggest that gravitational spreading had caused the SPT to spread unevenly from west to east. This process was accommodated by right-slip and left-slip faulting on the north and south sides and thrusting and extension along the eastern and southern margins of the tiger-stripe tectonic domain. The uneven spreading, expressed by a gradual northward increase in the number of extensional faults and thrusts/folds along the western and eastern margins, was accommodated by distributed right-slip simple shear across the whole tiger-stripe tectonic domain. This mode of deformation in turn resulted in the development of a passive bookshelf-fault system characterized by left-slip faulting on individual tiger-stripe fractures.

Tectonic geomorphology of large normal faults bounding the Cuzco rift basin within the southern Peruvian Andes

NASA Astrophysics Data System (ADS)

Byers, C.; Mann, P.

2015-12-01

The Cuzco basin forms a 80-wide, relatively flat valley within the High Andes of southern Peru. This larger basin includes the regional capital of Cuzco and the Urubamba Valley, or "Sacred Valley of the Incas" favored by the Incas for its mild climate and broader expanses of less rugged and arable land. The valley is bounded on its northern edge by a 100-km-long and 10-km-wide zone of down-to-the-south systems of normal faults that separate the lower area of the down-dropped plateau of central Peru and the more elevated area of the Eastern Cordillera foldbelt that overthrusts the Amazon lowlands to the east. Previous workers have shown that the normal faults are dipslip with up to 600 m of measured displacements, reflect north-south extension, and have Holocene displacments with some linked to destructive, historical earthquakes. We have constructed topographic and structural cross sections across the entire area to demonstrate the normal fault on a the plateau peneplain. The footwall of the Eastern Cordillera, capped by snowcapped peaks in excess of 6 km, tilts a peneplain surface northward while the hanging wall of the Cuzco basin is radially arched. Erosion is accelerated along the trend of the normal fault zone. As the normal fault zone changes its strike from east-west to more more northwest-southeast, normal displacement decreases and is replaced by a left-lateral strike-slip component.

East Cameron Block 270, offshore Louisiana: a Pleistocene field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holland, D.S.; Sutley, C.E.; Berlitz, R.E.

1976-01-01

Exploration of the Plio-Pleistocene in the Gulf of Mexico since 1970 has led to the discovery of significant hydrocarbon reserves. One of the better gas fields found to date has been the East Cameron Block 270 field, offshore Louisiana. Utilization of a coordinated exploitation plan with Schlumberger Offshore Services has allowed Pennzoil Co., as operator, to develop and put the Block 270 field on production in minimum time. The structure at Block 270 field is a north-south-trending, faulted nose at 6000 ft (1825 m). At the depth of the ''G'' sandstone (8700 ft or 2650 m), the structure is closed;more » it is elongated north-south and dips in all directions from the Block 270 area. Closure is the result of contemporaneous growth of the east-bounding regional fault. Structural and stratigraphic interpretations from dipmeters were used to determine the most favorable offset locations. The producing zones consist of various combinations of bar-like, channel-like, and distributary-front sandstones. The sediment source for most of the producing zones was southwest of the area, except for two zones which derived their sediments from the north through a system of channels paralleling the east-bounding fault. Computed logs were used to convert conventional logging measurements into a more readily usable form for evaluation. The computed results were used for reserve calculations, reservoir-quality determinations, and confirmation of depositional environments as determined from other sources.« less

Rupture Dynamics along Thrust Dipping Fault: Inertia Effects due to Free Surface Wave Interactions

NASA Astrophysics Data System (ADS)

Vilotte, J. P.; Scala, A.; Festa, G.

2017-12-01

We numerically investigate the dynamic interaction between free surface and up-dip, in-plane rupture propagation along thrust faults, under linear slip-weakening friction. With reference to shallow along-dip rupture propagation during large subduction earthquakes, we consider here low dip-angle fault configurations with fixed strength excess and depth-increasing initial stress. In this configuration, the rupture undergoes a break of symmetry with slip-induced normal stress perturbations triggered by the interaction with reflected waves from the free surface. We found that both body-waves - behind the crack front - and surface waves - at the crack front - can trigger inertial effects. When waves interact with the rupture before this latter reaches its asymptotic speed, the rupture can accelerate toward the asymptotic speed faster than in the unbounded symmetric case, as a result of these inertial effects. Moreover, wave interaction at the crack front also affects the slip rate generating large ground motion on the hanging wall. Imposing the same initial normal stress, frictional strength and stress drop while varying the static friction coefficient we found that the break of symmetry makes the rupture dynamics dependent on the absolute value of friction. The higher the friction the stronger the inertial effect both in terms of rupture acceleration and slip amount. When the contact condition allows the fault interface to open close to the free surface, the length of the opening zone is shown to depend on the propagation length, the initial normal stress and the static friction coefficient. These new results are shown to agree with analytical results of rupture propagation in bounded media, and open new perspectives for understanding the shallow rupture of large subduction earthquakes and tsunami sources.

Protein Interaction Analysis Provides a Map of the Spatial and Temporal Organization of the Ciliary Gating Zone.

PubMed

Takao, Daisuke; Wang, Liang; Boss, Allison; Verhey, Kristen J

2017-08-07

The motility and signaling functions of the primary cilium require a unique protein and lipid composition that is determined by gating mechanisms localized at the base of the cilium. Several protein complexes localize to the gating zone and may regulate ciliary protein composition; however, the mechanisms of ciliary gating and the dynamics of the gating components are largely unknown. Here, we used the BiFC (bimolecular fluorescence complementation) assay and report for the first time on the protein-protein interactions that occur between ciliary gating components and transiting cargoes during ciliary entry. We find that the nucleoporin Nup62 and the C termini of the nephronophthisis (NPHP) proteins NPHP4 and NPHP5 interact with the axoneme-associated kinesin-2 motor KIF17 and thus spatially map to the inner region of the ciliary gating zone. Nup62 and NPHP4 exhibit rapid turnover at the transition zone and thus define dynamic components of the gate. We find that B9D1, AHI1, and the N termini of NPHP4 and NPHP5 interact with the transmembrane protein SSTR3 and thus spatially map to the outer region of the ciliary gating zone. B9D1, AHI1, and NPHP5 exhibit little to no turnover at the transition zone and thus define components of a stable gating structure. These data provide the first comprehensive map of the molecular orientations of gating zone components along the inner-to-outer axis of the ciliary gating zone. These results advance our understanding of the functional roles of gating zone components in regulating ciliary protein composition. Copyright © 2017 Elsevier Ltd. All rights reserved.

Nanopore sensing of individual transcription factors bound to DNA

PubMed Central

Squires, Allison; Atas, Evrim; Meller, Amit

2015-01-01

Transcription factor (TF)-DNA interactions are the primary control point in regulation of gene expression. Characterization of these interactions is essential for understanding genetic regulation of biological systems and developing novel therapies to treat cellular malfunctions. Solid-state nanopores are a highly versatile class of single-molecule sensors that can provide rich information about local properties of long charged biopolymers using the current blockage patterns generated during analyte translocation, and provide a novel platform for characterization of TF-DNA interactions. The DNA-binding domain of the TF Early Growth Response Protein 1 (EGR1), a prototypical zinc finger protein known as zif268, is used as a model system for this study. zif268 adopts two distinct bound conformations corresponding to specific and nonspecific binding, according to the local DNA sequence. Here we implement a solid-state nanopore platform for direct, label- and tether-free single-molecule detection of zif268 bound to DNA. We demonstrate detection of single zif268 TFs bound to DNA according to current blockage sublevels and duration of translocation through the nanopore. We further show that the nanopore can detect and discriminate both specific and nonspecific binding conformations of zif268 on DNA via the distinct current blockage patterns corresponding to each of these two known binding modes. PMID:26109509

Nucleotide Dependent Switching in Rho GTPase: Conformational Heterogeneity and Competing Molecular Interactions

PubMed Central

Kumawat, Amit; Chakrabarty, Suman; Kulkarni, Kiran

2017-01-01

Ras superfamily of GTPases regulate myriad cellular processes through a conserved nucleotide (GTP/GDP) dependent switching mechanism. Unlike Ras family of GTPases, for the Rho GTPases, there is no clear evidence for the existence of “sub-states” such as state 1 & state 2 in the GTP bound form. To explore the nucleotide dependent conformational space of the Switch I loop and also to look for existence of state 1 like conformations in Rho GTPases, atomistic molecular dynamics and metadynamics simulations on RhoA were performed. These studies demonstrate that both the nucleotide-free state and the GDP bound “OFF” state have very similar conformations, whereas the GTP bound “ON” state has unique conformations with signatures of two intermediate states. The conformational free energy landscape for these systems suggests the presence of multiple intermediate states. Interestingly, the energetic penalty of exposing the non-polar residues in the GTP bound form is counter balanced by the favourable hydrogen bonded interactions between the γ-phosphate group of GTP with the highly conserved Tyr34 and Thr37 residues. These competing molecular interactions lead to a tuneable energy landscape of the Switch I conformation, which can undergo significant changes based on the local environment including changes upon binding to effectors. PMID:28374773

Nanopore sensing of individual transcription factors bound to DNA

NASA Astrophysics Data System (ADS)

Squires, Allison; Atas, Evrim; Meller, Amit

2015-06-01

Transcription factor (TF)-DNA interactions are the primary control point in regulation of gene expression. Characterization of these interactions is essential for understanding genetic regulation of biological systems and developing novel therapies to treat cellular malfunctions. Solid-state nanopores are a highly versatile class of single-molecule sensors that can provide rich information about local properties of long charged biopolymers using the current blockage patterns generated during analyte translocation, and provide a novel platform for characterization of TF-DNA interactions. The DNA-binding domain of the TF Early Growth Response Protein 1 (EGR1), a prototypical zinc finger protein known as zif268, is used as a model system for this study. zif268 adopts two distinct bound conformations corresponding to specific and nonspecific binding, according to the local DNA sequence. Here we implement a solid-state nanopore platform for direct, label- and tether-free single-molecule detection of zif268 bound to DNA. We demonstrate detection of single zif268 TFs bound to DNA according to current blockage sublevels and duration of translocation through the nanopore. We further show that the nanopore can detect and discriminate both specific and nonspecific binding conformations of zif268 on DNA via the distinct current blockage patterns corresponding to each of these two known binding modes.

Supramolecular Structures with Blood Plasma Proteins, Sugars and Nanosilica

NASA Astrophysics Data System (ADS)

Turov, V. V.; Gun'ko, V. M.; Galagan, N. P.; Rugal, A. A.; Barvinchenko, V. M.; Gorbyk, P. P.

Supramolecular structures with blood plasma proteins (albumin, immunoglobulin and fibrinogen (HPF)), protein/water/silica and protein/water/ silica/sugar (glucose, fructose and saccharose) were studied by NMR, adsorption, IR and UV spectroscopy methods. Hydration parameters, amounts of weakly and strongly bound waters and interfacial energy (γ S) were determined over a wide range of component concentrations. The γ S(C protein,C silica) graphs were used to estimate the energy of protein-protein, protein-surface and particle-particle interactions. It was shown that interfacial energy of self-association (γ as) of protein molecules depends on a type of proteins. A large fraction of water bound to proteins can be displaced by sugars, and the effect of disaccharide (saccharose) was greater than that of monosugars. Changes in the structural parameters of cavities in HPF molecules and complexes with HPF/silica nanoparticles filled by bound water were analysed using NMR-cryoporometry showing that interaction of proteins with silica leads to a significant decrease in the amounts of water bound to both protein and silica surfaces. Bionanocomposites with BSA/nanosilica/sugar can be used to influence states of living cells and tissues after cryopreservation or other treatments. It was shown that interaction of proteins with silica leads to strong decrease in the volume of all types of internal cavities filled by water.

Charm-beauty meson bound states from B (B*)D (D*) and B (B*)D \\xAF(D\\xAF*) interaction

NASA Astrophysics Data System (ADS)

Sakai, S.; Roca, L.; Oset, E.

2017-09-01

We evaluate the s -wave interaction of pseudoscalar and vector mesons with both charm and beauty to investigate the possible existence of molecular B D , B*D , B D*, B*D*, B D ¯, B*D ¯, B D¯*, or B*D¯* meson states. The scattering amplitude is obtained implementing unitarity starting from a tree level potential accounting for the dominant vector meson exchange. The diagrams are evaluated using suitable extensions to the heavy flavor sector of the hidden gauge symmetry Lagrangians involving vector and pseudoscalar mesons, respecting heavy quark spin symmetry. We obtain bound states at energies above 7 GeV for B D (JP=0+), B*D (1+), B D* (1+), and B*D* (0+, 1+, 2+), all in isospin 0. For B D ¯ (0+), B*D ¯ (1+), B D¯* (1+), and B*D¯* (0+, 1+, 2+) we also find similar bound states in I =0 , but much less bound, which would correspond to exotic meson states with b ¯ and c ¯ quarks, and for the I =1 we find a repulsive interaction. We also evaluate the scattering lengths in all cases, which can be tested in current investigations of lattice QCD.

Nucleotide Dependent Switching in Rho GTPase: Conformational Heterogeneity and Competing Molecular Interactions

NASA Astrophysics Data System (ADS)

Kumawat, Amit; Chakrabarty, Suman; Kulkarni, Kiran

2017-04-01

Ras superfamily of GTPases regulate myriad cellular processes through a conserved nucleotide (GTP/GDP) dependent switching mechanism. Unlike Ras family of GTPases, for the Rho GTPases, there is no clear evidence for the existence of “sub-states” such as state 1 & state 2 in the GTP bound form. To explore the nucleotide dependent conformational space of the Switch I loop and also to look for existence of state 1 like conformations in Rho GTPases, atomistic molecular dynamics and metadynamics simulations on RhoA were performed. These studies demonstrate that both the nucleotide-free state and the GDP bound “OFF” state have very similar conformations, whereas the GTP bound “ON” state has unique conformations with signatures of two intermediate states. The conformational free energy landscape for these systems suggests the presence of multiple intermediate states. Interestingly, the energetic penalty of exposing the non-polar residues in the GTP bound form is counter balanced by the favourable hydrogen bonded interactions between the γ-phosphate group of GTP with the highly conserved Tyr34 and Thr37 residues. These competing molecular interactions lead to a tuneable energy landscape of the Switch I conformation, which can undergo significant changes based on the local environment including changes upon binding to effectors.

On absence of bound states for weakly attractive δ'-interactions supported on non-closed curves in ℝ2

NASA Astrophysics Data System (ADS)

Jex, Michal; Lotoreichik, Vladimir

2016-02-01

Let Λ ⊂ ℝ2 be a non-closed piecewise-C1 curve, which is either bounded with two free endpoints or unbounded with one free endpoint. Let u±|Λ ∈ L2(Λ) be the traces of a function u in the Sobolev space H1(ℝ2∖Λ) onto two faces of Λ. We prove that for a wide class of shapes of Λ the Schrödinger operator Hω Λ with δ'-interaction supported on Λ of strength ω ∈ L∞(Λ; ℝ) associated with the quadratic form H 1 ( R 2 ∖ Λ ) ∋ u ↦ ∫ R 2 |" separators=" ∇ u | 2 d x - ∫ Λ ω |" separators=" u + | Λ - u - | Λ | 2 d s has no negative spectrum provided that ω is pointwise majorized by a strictly positive function explicitly expressed in terms of Λ. If, additionally, the domain ℝ2∖Λ is quasi-conical, we show that σ ( Hω Λ ) = [ 0 , + ∞ ) . For a bounded curve Λ in our class and non-varying interaction strength ω ∈ ℝ, we derive existence of a constant ω∗ > 0 such that σ ( Hω Λ ) = [ 0 , + ∞ ) for all ω ∈ (-∞, ω∗]; informally speaking, bound states are absent in the weak coupling regime.

Neutron Reflectometry Study of the Conformation of HIV Nef Bound to Lipid Membranes

PubMed Central

Kent, Michael S.; Murton, Jaclyn K.; Sasaki, Darryl Y.; Satija, Sushil; Akgun, Bulent; Nanda, Hirsh; Curtis, Joseph E.; Majewski, Jaroslaw; Morgan, Christopher R.; Engen, John R.

2010-01-01

Nef is an HIV-1 accessory protein that directly contributes to AIDS progression. Nef is myristoylated on the N-terminus, associates with membranes, and may undergo a transition from a solution conformation to a membrane-associated conformation. It has been hypothesized that conformational rearrangement enables membrane-associated Nef to interact with cellular proteins. Despite its medical relevance, to our knowledge there is no direct information about the conformation of membrane-bound Nef. In this work, we used neutron reflection to reveal what we believe are the first details of the conformation of membrane-bound Nef. The conformation of Nef was probed upon binding to Langmuir monolayers through the interaction of an N-terminal His tag with a synthetic metal-chelating lipid, which models one of the possible limiting cases for myr-Nef. The data indicate that residues are inserted into the lipid headgroups during interaction, and that the core domain lies directly against the lipid headgroups, with a thickness of ∼40 Å. Binding of Nef through the N-terminal His tag apparently facilitates insertion of residues, as no insertion occurred upon binding of Nef through weak electrostatic interactions in the absence of the specific interaction through the His tag. PMID:20858440

Biplot evaluation of test environments and identification of mega-environment for sugarcane cultivars in China

PubMed Central

Luo, Jun; Pan, Yong-Bao; Que, Youxiong; Zhang, Hua; Grisham, Michael Paul; Xu, Liping

2015-01-01

Test environments and classification of regional ecological zones into mega environments are the two key components in regional testing of sugarcane cultivars. This study aims to provide the theoretical basis for test environment evaluation and ecological zone division for sugarcane cultivars. In the present study, sugarcane yield data from a three-year nationwide field trial involving 21 cultivars and 14 pilot test locations were analysed using both analysis of variance (ANOVA) and heritability adjusted-genotype main effect plus genotype-environment interaction (HA-GGE) biplot. The results showed that among the interactive factors, the GE interaction had the greatest impact, while the genotype and year interaction showed the lowest impact. Kaiyuan, Lincang and Baoshan of Yunnan, Zhangzhou and Fuzhou of Fujian, and Hechi, Liuzhou and Chongzuo of Guangxi, and Lingao of Hainan were ideal test environments with a demonstrated high efficiency in selecting new cultivars with a wide adaptability, whereas Baise of Guangxi was not. Based on HA-GGE biplot analysis, there are three ecological sugarcane production zones in China, the Southern China Inland Zone, the Southwestern Plateau Zone, and the Southern Coastal Zone. The HA-GGE biplot analysis here presents the ideal test environments and also identifies the mega-environment for sugarcane cultivars in China. PMID:26489689

Biplot evaluation of test environments and identification of mega-environment for sugarcane cultivars in China.

PubMed

Luo, Jun; Pan, Yong-Bao; Que, Youxiong; Zhang, Hua; Grisham, Michael Paul; Xu, Liping

2015-10-22

Test environments and classification of regional ecological zones into mega environments are the two key components in regional testing of sugarcane cultivars. This study aims to provide the theoretical basis for test environment evaluation and ecological zone division for sugarcane cultivars. In the present study, sugarcane yield data from a three-year nationwide field trial involving 21 cultivars and 14 pilot test locations were analysed using both analysis of variance (ANOVA) and heritability adjusted-genotype main effect plus genotype-environment interaction (HA-GGE) biplot. The results showed that among the interactive factors, the GE interaction had the greatest impact, while the genotype and year interaction showed the lowest impact. Kaiyuan, Lincang and Baoshan of Yunnan, Zhangzhou and Fuzhou of Fujian, and Hechi, Liuzhou and Chongzuo of Guangxi, and Lingao of Hainan were ideal test environments with a demonstrated high efficiency in selecting new cultivars with a wide adaptability, whereas Baise of Guangxi was not. Based on HA-GGE biplot analysis, there are three ecological sugarcane production zones in China, the Southern China Inland Zone, the Southwestern Plateau Zone, and the Southern Coastal Zone. The HA-GGE biplot analysis here presents the ideal test environments and also identifies the mega-environment for sugarcane cultivars in China.

Application of Ring-Closing Metathesis to Grb2 SH3 Domain-Binding Peptides | Center for Cancer Research

Cancer.gov

In silico-generated hypothetical interactions of a ring-closing metathesis-macrocylized peptide bound to the amino terminal SH3 domain of the growth factor receptor bound protein 2 (Grb2). The complex was derived from the NMR solution structure of the bound parent peptide, Ac-V-P-P-P-V-P-P-R-R-R-amide (Protein Data Bank: 3GBQ). The protein surface is shown as electrostatic

Seafloor expressions of tectonic structures in Isfjorden, Svalbard: implications for fluid migration

NASA Astrophysics Data System (ADS)

Roy, Srikumar; Noormets, Riko; Braathen, Alvar

2014-05-01

This study investigates the seafloor expressions of Isfjorden in western Svalbard, interlinked with sub-seafloor structures using a dense grid of 2D multichannel marine seismic and magnetic data integrated with high resolution multibeam bathymetric data. The underlying bedrock structures spans from Paleozoic carbonates and evaporates to Mesozoic and Paleogene sandstones and shales. This 4 to 6 km thick succession is truncated by structures linked to Eocene transpressional deformation that resulted in the formation of the West Spitsbergen Fold-and-Thrust Belt (WSFTB). The WSFTB divides into three major belts : (a) western zone characterized by a basement involved fold-thrust complex, (b) central zone consisting of three thin-skinned fold-thrust sheets with thrusts splaying from décollement layers and, east of a frontal duplex system, (c) eastern zone showing décollement in Mesozoic shales with some thrust splays, and with the décollement interacting with reactivated, steep and basement-rooted faults (Bergh et al., 1997). In the continuation, we discuss combined seafloor and bedrock observations, starting from the west. In the west, a 6.5 km long and 5 to 9 m high ridge demarcates the eastern boundary of the major basement involved fold complex, with thrusted and folded competent Cretaceous to Paleogene units reaching the seafloor. Three submarine slides originate from this ridge, possibly triggered by tectonic activities. In Central Isfjorden (central zone of the WSFTB), several NNW-SSE striking ridges with a relief of 5 to 25 m have been tied with shallow, steep faults and folds. In addition to the NNW-SSE striking ridges, a set of SW-NE striking ridges with relief of 2 to 5 m are observed in Nordfjorden. Based on the seismic data observations, these ridges can be linked to the surface expression of competent sandstones that are transported on splay-thrusts above a décollement in Triassic shales. Further, seafloor ridges with relief of 5 of 18 m, linked to high amplitude flat reflectors and high magnetic values have been interpreted as Cretaceous dolerite intrusions in Nordfjorden and central Isfjorden. In the eastern Isfjorden (eastern zone of WSFTB), a 10.5 km long N-S striking ridge in Billefjorden corresponds to the deep-seated Billefjorden Fault Zone, extending south across the mouth of Tempelfjorden where it is 8.5 km long. This composite ridge is bound by a steep east-dipping fault, placing competent Carboniferous and Permian carbonates at the seafloor. Overall, our study shows a distinct pattern of pockmarks concentrated along the identified ridges on the seafloor of Isfjorden. These ridges can be linked to fault-fold systems and dolerite intrusions in the bedrock, thereby suggesting various possible fluid migration pathways towards pockmarks: (i) along fracture networks associated with folds and intrusions, (ii) along décollement zones and faults acting as localized conduits, and (iii) directly from organic rich layers when exposed at the seafloor. Reference: Bergh, S. G., Braathen, A., and Andresen, A., 1997, Interaction of basement-involved and thin-skinned tectonism in the Tertiary fold-thrust belt of central Spitsbergen, Svalbard: AAPG Bulletin, v. 81, no. 4, p. 637-661.

A S-wave Tomography Study for the First Order of Tectonic Unit Boundaries nearby Eastern Region of Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, F.; Wu, Q.; Li, Y.; Zhang, R.

2017-12-01

The eastern region of Tibetan plateau (ERTP) and North-South seismic zone (NSSZ), which look like an N-S trending rectangle shape, consist of the Sichuan basin in its center, the Yungui plateau to the south, the Qinling mountain range and Ordos plateau range to the north. In the field of geosciences, Sichuan basin and Yungui plateau belong to Yangtze Craton while Ordos plateau belongs to western part of Sino-Korean Craton, and Qinling mountain is the suture zone where Sino-Korean Craton and Yangtze Craton collide between each other. To the west, ERTP is bounded by the Songpan-Ganzi terrane where a branch of the Paleotethys ocean, namely Songpan-Ganzi ocean, closed at late Triassic as a result of convergence between Qiangtang terrane, Sino-Korean Craton and Yangtze Craton. To the east, ERTP is bounded by South China block which was separated from Rodinia supercontinent by rifting processes during Neoproterozoic and was made up of two major crustal blocks-the Yangtze block in the north and the Cathysia block in the south. Tomography results using Chinaarray data from 2011 to 2015 show prominent heterogeneity beneath ERTP and NSSZ to 600 km depth. At depth range from 10 km to 100 km, the patterns of high-veloicty (high-V) and low-velocity (low-V) are well correlated with the tectonic features. The broad high-V anomalies mainly underlie Alashan, Ordos, Sichuan basin blocks, as well as part of the southern Chuandian fragment. In contrast, the broad low-V anomalies are approximately located beneath the Kunlun-Qilian fold zone, Songpan-Ganzi blocks, northern Chuandian fragment and southwestern part of Yunnan. At depth of 200 km and 300 km, the high-V zone beneath the southern Chuandian fragment slightly enlarges and is connected to Sichuan basin high-V zone. A weak striped low-V zone, located between Ordos and Sichuan basin blocks, is revealed in the Qinling fold zone. Both the amplitudes of high-V and low-V anomalies decrease to within -2% and 2%, comparing with that above the depth of 100 km. At the depth below 400 km, the wave speed patterns seem to be quite different from that above 300 km depth, and the big areas characterized by high-V or low-V anomalies disappear and change to (splits up) small regions. Moreover, an obvious mixture of high-V and low-V small zones is imaged clearly with respect to the increasing depth.

Nanopolyaniline as immobilization template for signal enhancement of surface plasmon resonance biosensor - A preliminary study

NASA Astrophysics Data System (ADS)

Kamarun, Dzaraini; Abdul Azem, Nor Hazirah Kamel; Sarijo, Siti Halimah; Mohd, Ahmad Faiza; Abdullah @ Mohd Noor, Mashita

2012-07-01

A technique for the enhancement of Surface Plasmon Resonance (SPR) signal for sensing biomolecular interactions is described. Polyaniline (PANI) of particle size in the range of 1 to 15 nm was synthesized and used as the template for the immobilization of protein molecules. Biomolecular interactions of unbound and PANI-bound proteins with antibody molecules were SPR-monitored using a model system comprising of Bovine Serum Albumin (BSA) and anti BSA. A 7-fold increased in the signal was recorded from interactions of the PANI-bound BSA with anti BSA compared to the interactions of its unbound counterpart. This preliminary observation provides new avenue in immunosensor technology for improving the detection sensitivity of SPR biosensor; and thereby increasing the lower detection limit of biomolecules.

Self-assembly of acetate adsorbates drives atomic rearrangement on the Au(110) surface

DOE PAGES

Hiebel, Fanny; Shong, Bonggeun; Chen, Wei; ...

2016-10-12

Weak inter-adsorbate interactions are shown to play a crucial role in determining surface structure, with major implications for its catalytic reactivity. This is exemplified here in the case of acetate bound to Au(110), where the small extra energy of the van der Waals interactions among the surface-bound groups drives massive restructuring of the underlying Au. Acetate is a key intermediate in electro-oxidation of CO 2 and a poison in partial oxidation reactions. Metal atom migration originates at surface defects and is likely facilitated by weakened Au–Au interactions due to bonding with the acetate. Even though the acetate is a relativelymore » small molecule, weak intermolecular interaction provides the energy required for molecular self-assembly and reorganization of the metal surface.« less

Self-assembly of acetate adsorbates drives atomic rearrangement on the Au(110) surface

PubMed Central

Hiebel, Fanny; Shong, Bonggeun; Chen, Wei; Madix, Robert J.; Kaxiras, Efthimios; Friend, Cynthia M.

2016-01-01

Weak inter-adsorbate interactions are shown to play a crucial role in determining surface structure, with major implications for its catalytic reactivity. This is exemplified here in the case of acetate bound to Au(110), where the small extra energy of the van der Waals interactions among the surface-bound groups drives massive restructuring of the underlying Au. Acetate is a key intermediate in electro-oxidation of CO2 and a poison in partial oxidation reactions. Metal atom migration originates at surface defects and is likely facilitated by weakened Au–Au interactions due to bonding with the acetate. Even though the acetate is a relatively small molecule, weak intermolecular interaction provides the energy required for molecular self-assembly and reorganization of the metal surface. PMID:27731407

Interacting dark energy: Dynamical system analysis

NASA Astrophysics Data System (ADS)

Golchin, Hanif; Jamali, Sara; Ebrahimi, Esmaeil

We investigate the impacts of interaction between dark matter (DM) and dark energy (DE) in the context of two DE models, holographic (HDE) and ghost dark energy (GDE). In fact, using the dynamical system analysis, we obtain the cosmological consequence of several interactions, considering all relevant component of universe, i.e. matter (dark and luminous), radiation and DE. Studying the phase space for all interactions in detail, we show the existence of unstable matter-dominated and stable DE-dominated phases. We also show that linear interactions suffer from the absence of standard radiation-dominated epoch. Interestingly, this failure resolved by adding the nonlinear interactions to the models. We find an upper bound for the value of the coupling constant of the interaction between DM and DE as b < 0.57in the case of holographic model, and b < 0.61 in the case of GDE model, to result in a cosmological viable matter-dominated epoch. More specifically, this bound is vital to satisfy instability and deceleration of matter-dominated epoch.

Deep structure beneath Lake Ontario: Crustal-scale Grenville subdivisions

USGS Publications Warehouse

Forsyth, D. A.; Milkereit, B.; Zelt, Colin A.; White, D. J.; Easton, R. M.; Hutchinson, Deborah R.

1994-01-01

Lake Ontario marine seismic data reveal major Grenville crustal subdivisions beneath central and southern Lake Ontario separated by interpreted shear zones that extend to the lower crust. A shear zone bounded transition between the Elzevir and Frontenac terranes exposed north of Lake Ontario is linked to a seismically defined shear zone beneath central Lake Ontario by prominent aeromagnetic and gravity anomalies, easterly dipping wide-angle reflections, and fractures in Paleozoic strata. We suggest the central Lake Ontario zone represents crustal-scale deformation along an Elzevir–Frontenac boundary zone that extends from outcrop to the south shore of Lake Ontario.Seismic images from Lake Ontario and the exposed western Central Metasedimentary Belt are dominated by crustal-scale shear zones and reflection geometries featuring arcuate reflections truncated at their bases by apparent east-dipping linear reflections. The images show that zones analogous to the interpreted Grenville Front Tectonic Zone are also present within the Central Metasedimentary Belt and support models of northwest-directed crustal shortening for Grenvillian deep crustal deformation beneath most of southeastern Ontario.A Precambrian basement high, the Iroquoian high, is defined by a thinning of generally horizontal Paleozoic strata over a crestal area above the basement shear zone beneath central Lake Ontario. The Iroquoian high helps explain the peninsular extension into Lake Ontario forming Prince Edward County, the occurrence of Precambrian inlier outcrops in Prince Edward County, and Paleozoic fractures forming the Clarendon–Linden structure in New York.

Polarization and coherence in the Hanbury Brown–Twiss effect

NASA Astrophysics Data System (ADS)

Liu, Xianlong; Wu, Gaofeng; Pang, Xiaoyan; Kuebel, David; Visser, Taco D.

2018-07-01

We study the correlation of intensity fluctuations in random electromagnetic beams, the so-called Hanbury Brown-Twiss effect (HBT). We show that not just the state of coherence of the source, but also its state of polarization has a strong influence on the far-zone correlations. Different types of sources are found to have different upper bounds for the normalized HBT coefficient.

33 CFR 167.1301 - In the approaches to the Strait of Juan de Fuca: Western approach.

Code of Federal Regulations, 2011 CFR

2011-07-01

... of Juan de Fuca: Western approach. 167.1301 Section 167.1301 Navigation and Navigable Waters COAST....1301 In the approaches to the Strait of Juan de Fuca: Western approach. In the western approach to the Strait of Juan de Fuca, the following are established: (a) A separation zone bounded by a line connecting...

Are starburst galaxies proton calorimeters?

NASA Astrophysics Data System (ADS)

Wang, Xilu; Fields, Brian D.

2018-03-01

Several starburst galaxies have been observed in the GeV and TeV bands. In these dense environments, gamma-ray emission should be dominated by cosmic ray (CR) interactions with the interstellar medium (pcrpism → π0 → γγ). Indeed, starbursts may act as proton `calorimeters' where a substantial fraction of CR energy input is emitted in gamma-rays. Here, we build a one-zone, `thick-target' model implementing calorimetry and placing a firm upper bound on gamma-ray emission from CR interactions. The model assumes that CRs are accelerated by supernovae (SNe), and all suffer nuclear interactions rather than escape. Our model has only two free parameters: the CR proton acceleration energy per SN ɛcr, and the proton injection spectral index s. We calculate the pionic gamma-ray emission from 10 MeV to 10 TeV, and derive thick-target parameters for six galaxies with Fermi, H.E.S.S., and/or VERITAS data. Our model provides good fits for the M82 and NGC 253, and yields ɛcr and s values suggesting that SN CR acceleration is similar in starbursts and in our Galaxy. We find that these starbursts are indeed nearly if not fully proton calorimeters. For NGC 4945 and NGC 1068, the models are consistent with calorimetry but are less well-constrained due to the lack of TeV data. However, the Circinus galaxy and the ultra-luminous infrared galaxy Arp 220 exceed our pionic upper-limit; possible explanations are discussed.

The structure and spectrum of a colliding-cloud system and its possible relationship to QSOs

NASA Technical Reports Server (NTRS)

Daltabuit, E.; Macalpine, G. M.; Cox, D. P.

1978-01-01

A collision between two gas clouds with initial densities of approximately 10 million per cu cm, velocities of about 1000 km/s, and radii of approximately 1 pc is investigated quantitatively by coupling a calculation of the radiation spectrum resulting from the anticipated shock fronts with a computation for the conversion of this high-energy radiation into optical emission in adjacent photoionized regions. The detailed structure of the colliding clouds is discussed, and the effects of an ambient magnetic field are considered. The combined emission-line spectrum is presented along with continuum emission estimates for thermal, synchrotron, and very-high-energy bremsstrahlung mechanisms. It is shown that significant continua can be produced over the range from 300 microns to 3 keV, including a blackbody contribution from a high-density neutral region between the shock fronts, free-free and free-bound radiation from the cooling zones directly behind the shocks, and free-free, free-bound, and two-photon radiation from the photoionized regions immediately ahead of and behind the cooling zones. The theoretical spectrum of the structure resulting from the collision is found to be similar in general and in some details to those observed for typical quasars.

Adaptive NN controller design for a class of nonlinear MIMO discrete-time systems.

PubMed

Liu, Yan-Jun; Tang, Li; Tong, Shaocheng; Chen, C L Philip

2015-05-01

An adaptive neural network tracking control is studied for a class of multiple-input multiple-output (MIMO) nonlinear systems. The studied systems are in discrete-time form and the discretized dead-zone inputs are considered. In addition, the studied MIMO systems are composed of N subsystems, and each subsystem contains unknown functions and external disturbance. Due to the complicated framework of the discrete-time systems, the existence of the dead zone and the noncausal problem in discrete-time, it brings about difficulties for controlling such a class of systems. To overcome the noncausal problem, by defining the coordinate transformations, the studied systems are transformed into a special form, which is suitable for the backstepping design. The radial basis functions NNs are utilized to approximate the unknown functions of the systems. The adaptation laws and the controllers are designed based on the transformed systems. By using the Lyapunov method, it is proved that the closed-loop system is stable in the sense that the semiglobally uniformly ultimately bounded of all the signals and the tracking errors converge to a bounded compact set. The simulation examples and the comparisons with previous approaches are provided to illustrate the effectiveness of the proposed control algorithm.

Bound states in the continuum and polarization singularities in periodic arrays of dielectric rods

NASA Astrophysics Data System (ADS)

Bulgakov, Evgeny N.; Maksimov, Dmitrii N.

2017-12-01

We consider optical bound states in the continuum (BICs) in periodic arrays of dielectric rods. The full classification of BICs in the above system is provided, including the modes propagating along the axes of the rods and bidirectional BICs propagating both along the axes of the rods and the axis of periodicity. It is shown that the leaky zones supporting the BICs generally have elliptically polarized far-field radiation patterns, with the polarization ellipses collapsing on approach to the BICs in momentum space. That allowed us to apply the concept of polarization singularities and demonstrate that the BICs possess a topological charge defined as the winding number of the polarization direction [Phys. Rev. Lett. 113, 257401 (2014), 10.1103/PhysRevLett.113.257401]. It is found that the evolution of the BICs, including their creation and annihilation, under variation of geometric parameters is controlled by the topological charge. Three scenarios of such evolution for different leaky zones are described. Finally, it is shown that the topological properties of the BICs can be extracted from transmission spectra when the system is illuminated by a plane wave of circular polarization.

Astrophysics and cosmology confront the 17 keV neutrino

NASA Technical Reports Server (NTRS)

Kolb, Edward W.; Turner, Michael S.

1991-01-01

A host of astrophysical and cosmological arguments severely constrain the properties of a 17 keV Dirac neutrino. Such a neutrino must have interactions beyond those of the standard electroweak theory to reduce its cosmic abundance (through decay or annihilation) by a factor of two hundred. A predicament arises because the additional helicity states of the neutrino necessary to construct a Dirac mass must have interactions strong enough to evade the astrophysical bound from SN 1987A, but weak enough to avoid violating the bound from primordial nucleosynthesis.

Astrophysics and cosmology confront the 17-keV neutrino

NASA Technical Reports Server (NTRS)

Kolb, Edward W.; Turner, Michael S.

1991-01-01

A host of astrophysical and cosmological arguments severely constrain the properties of a 17 keV Dirac neutrino. Such a neutrino must have interactions beyond those of the standard electroweak theory to reduce its cosmic abundance (through decay or annihilation) by a factor of two hundred. A predicament arises because the additional helicity states of the neutrino necessary to construct a Dirac mass must have interactions strong enough to evade the astrophysical bound from SN 1987A, but weak enough to avoid violating the bound from primordial nucleosynthesis.

QCD inequalities for hadron interactions.

PubMed

Detmold, William

2015-06-05

We derive generalizations of the Weingarten-Witten QCD mass inequalities for particular multihadron systems. For systems of any number of identical pseudoscalar mesons of maximal isospin, these inequalities prove that near threshold interactions between the constituent mesons must be repulsive and that no bound states can form in these channels. Similar constraints in less symmetric systems are also extracted. These results are compatible with experimental results (where known) and recent lattice QCD calculations, and also lead to a more stringent bound on the nucleon mass than previously derived, m_{N}≥3/2m_{π}.

Effect of precipitation spatial distribution uncertainty on the uncertainty bounds of a snowmelt runoff model output

NASA Astrophysics Data System (ADS)

Jacquin, A. P.

2012-04-01

This study analyses the effect of precipitation spatial distribution uncertainty on the uncertainty bounds of a snowmelt runoff model's discharge estimates. Prediction uncertainty bounds are derived using the Generalized Likelihood Uncertainty Estimation (GLUE) methodology. The model analysed is a conceptual watershed model operating at a monthly time step. The model divides the catchment into five elevation zones, where the fifth zone corresponds to the catchment glaciers. Precipitation amounts at each elevation zone i are estimated as the product between observed precipitation (at a single station within the catchment) and a precipitation factor FPi. Thus, these factors provide a simplified representation of the spatial variation of precipitation, specifically the shape of the functional relationship between precipitation and height. In the absence of information about appropriate values of the precipitation factors FPi, these are estimated through standard calibration procedures. The catchment case study is Aconcagua River at Chacabuquito, located in the Andean region of Central Chile. Monte Carlo samples of the model output are obtained by randomly varying the model parameters within their feasible ranges. In the first experiment, the precipitation factors FPi are considered unknown and thus included in the sampling process. The total number of unknown parameters in this case is 16. In the second experiment, precipitation factors FPi are estimated a priori, by means of a long term water balance between observed discharge at the catchment outlet, evapotranspiration estimates and observed precipitation. In this case, the number of unknown parameters reduces to 11. The feasible ranges assigned to the precipitation factors in the first experiment are slightly wider than the range of fixed precipitation factors used in the second experiment. The mean squared error of the Box-Cox transformed discharge during the calibration period is used for the evaluation of the goodness of fit of the model realizations. GLUE-type uncertainty bounds during the verification period are derived at the probability levels p=85%, 90% and 95%. Results indicate that, as expected, prediction uncertainty bounds indeed change if precipitation factors FPi are estimated a priori rather than being allowed to vary, but that this change is not dramatic. Firstly, the width of the uncertainty bounds at the same probability level only slightly reduces compared to the case where precipitation factors are allowed to vary. Secondly, the ability to enclose the observations improves, but the decrease in the fraction of outliers is not significant. These results are probably due to the narrow range of variability allowed to the precipitation factors FPi in the first experiment, which implies that although they indicate the shape of the functional relationship between precipitation and height, the magnitude of precipitation estimates were mainly determined by the magnitude of the observations at the available raingauge. It is probable that the situation where no prior information is available on the realistic ranges of variation of the precipitation factors, and the inclusion of precipitation data uncertainty, would have led to a different conclusion. Acknowledgements: This research was funded by FONDECYT, Research Project 1110279.

Application of MRIL-WD (Magnetic Resonance Imaging Logging While Drilling) for irreducible water saturation, total reservoir, free-fluid, bound-fluid porosity measurements and its value for the petrophysical analysis of RT/RM data from the Shah Deniz well

NASA Astrophysics Data System (ADS)

Amirov, Elnur

2016-04-01

Sperry-Sun (Sperry Drilling Services) is the leader in MWD/LWD reliability, has developed the industry's first LWD NMR/MRIL-WD (nuclear magnetic resonance) tool. The MRIL-WD (magnetic resonance imaging logging-while-drilling) service directly measures the T1 component of hydrogen in subsurface rock units while drilling to obtain total reservoir porosity and to dissect the observed total porosity into its respective components of free fluid and bound fluid porosity. These T1 data are used to secure accurate total, free-fluid, capillary-bound water, and clay-bound water porosity of the reservoir sections which can be drilled in the several Runs. Over the last decade, results from Magnetic Resonance Imaging logs (NMR) have added significant value to petrophysical analysis and understanding by providing total, free-fluid and bound-fluid porosities, combined with fluid typing capabilities. With MRIL-WD very valuable Real-Time or Recorded Memory data/information is now available during or shortly after the drilling operation (formation properties measurement can be taken right after a drill bit penetration), while trip in and trip out as well. A key point in utilizing MRIL in an LWD environment is motion-tolerant measurements. Recent MRIL-WD logging runs from the Shah Deniz wells located in the Khazarian-Caspian Sea of the Azerbaijan Republic helped to delineate and assess hydrocarbon bearing zones. Acquired results demonstrate how MRIL data can be acquired while-drilling and provide reliable/high quality measurements. Magnetic Resonance Imaging logs at some developments wells have become a cornerstone in formation evaluation and petrophysical understanding. By providing total, free-fluid, and bound-fluid porosities together with fluid typing, MRIL results have significantly added to the assessment of reservoirs. In order to reduce NPT (Non-Productive Time) and save the rig operations time, there is always the desire to obtain logging results as soon as possible, preferably while the drilling of the brand new wells (logging-while-drilling, LWD). The MRIL-WD Tool can accomplish any tasks reliably and in a timely manner thus saving drilling time and reducing the overall risk for the well. Control of water production and identification of pay zones with high irreducible water saturation are also very important for formation evaluation and petrophysical analysis in oil fields located in the Azerbaijan Republic and also other fields around the world. Sometimes above-mentioned problems can cause delay in completion decisions which will create additional expenses for field management. In many wells, breakthroughs in reservoir characterization have been achieved in directly determining hydrocarbon volumes, net permeability thickness, and hydrocarbon type, thus circumventing the problems associated with obtaining wireline data and the considerable amount of rig time required (so MRIL-WD can considerably reduce the NPT). Some reservoir zones with relatively low water saturation, which calculated from the other conventional logs, can produce with relatively high percentage of water cut, primarily because much of the water is movable. However, other zones with high calculated water saturation produce water free hydrocarbons. The difficulty in predicting water production can be related with the producing from the complex lithology, which can contain low-permeability, medium- to fine-grained shaly sands. Where grains are small, the formations have high surface to volume ratios that result in high irreducible water saturation and due to this we can see low resistivity values. As a result the use of resistivity logs as pay indicator, sometimes can cause low resistivity pay zones might be overlooked and consequently net field pay could be underestimated. In the last few years, nuclear magnetic resonance logs have shown great promise in solving problems of formation evaluation that could not be directly resolved with conventional logs. The capability of MRIL-WD can help many engineers to differentiate between the immovable and movable water in oil reservoirs in many fields. Sometimes MRIL-WD have also been capable of providing better formation permeability than conventional logs, a feature which can save time and expense in well-completion decisions. The RT & RM bound fluid and total porosity measurements can provide a tremendous new insight into the formation evaluation of shaly sands and low resistivity pays. Unlike traditional porosity devices, which are affected by rock matrix changes, the MRIL-WD tool can be used in complex or mixed lithology sequences and provide measurements of porosity that are lithology independent.

Faulting along the southern margin of Reelfoot Lake, Tennessee

USGS Publications Warehouse

Van Arsdale, R.; Purser, J.; Stephenson, W.; Odum, J.

1998-01-01

The Reelfoot Lake basin, Tennessee, is structurally complex and of great interest seismologically because it is located at the junction of two seismicity trends of the New Madrid seismic zone. To better understand the structure at this location, a 7.5-km-long seismic reflection profile was acquired on roads along the southern margin of Reelfoot Lake. The seismic line reveals a westerly dipping basin bounded on the west by the Reelfoot reverse fault zone, the Ridgely right-lateral transpressive fault zone on the east, and the Cottonwood Grove right-lateral strike-slip fault in the middle of the basin. The displacement history of the Reelfoot fault zone appears to be the same as the Ridgely fault zone, thus suggesting that movement on these fault zones has been synchronous, perhaps since the Cretaceous. Since the Reelfoot and Ridgely fault systems are believed responsible for two of the mainshocks of 1811-1812, the fault history revealed in the Reelfoot Lake profile suggests that multiple mainshocks may be typical of the New Madrid seismic zone. The Ridgely fault zone consists of two northeast-striking faults that lie at the base of and within the Mississippi Valley bluff line. This fault zone has 15 m of post-Eocene, up-to-the-east displacement and appears to locally control the eastern limit of Mississippi River migration. The Cottonwood Grove fault zone passes through the center of the seismic line and has approximately 5 m up-to-the-east displacement. Correlation of the Cottonwood Grove fault with a possible fault scarp on the floor of Reelfoot Lake and the New Markham fault north of the lake suggests the Cottonwood Grove fault may change to a northerly strike at Reelfoot Lake, thereby linking the northeast-trending zones of seismicity in the New Madrid seismic zone.

Evolving geometrical heterogeneities of fault trace data

NASA Astrophysics Data System (ADS)

Wechsler, Neta; Ben-Zion, Yehuda; Christofferson, Shari

2010-08-01

We perform a systematic comparative analysis of geometrical fault zone heterogeneities using derived measures from digitized fault maps that are not very sensitive to mapping resolution. We employ the digital GIS map of California faults (version 2.0) and analyse the surface traces of active strike-slip fault zones with evidence of Quaternary and historic movements. Each fault zone is broken into segments that are defined as a continuous length of fault bounded by changes of angle larger than 1°. Measurements of the orientations and lengths of fault zone segments are used to calculate the mean direction and misalignment of each fault zone from the local plate motion direction, and to define several quantities that represent the fault zone disorder. These include circular standard deviation and circular standard error of segments, orientation of long and short segments with respect to the mean direction, and normal separation distances of fault segments. We examine the correlations between various calculated parameters of fault zone disorder and the following three potential controlling variables: cumulative slip, slip rate and fault zone misalignment from the plate motion direction. The analysis indicates that the circular standard deviation and circular standard error of segments decrease overall with increasing cumulative slip and increasing slip rate of the fault zones. The results imply that the circular standard deviation and error, quantifying the range or dispersion in the data, provide effective measures of the fault zone disorder, and that the cumulative slip and slip rate (or more generally slip rate normalized by healing rate) represent the fault zone maturity. The fault zone misalignment from plate motion direction does not seem to play a major role in controlling the fault trace heterogeneities. The frequency-size statistics of fault segment lengths can be fitted well by an exponential function over the entire range of observations.

Integrative interactive visualization of crystal structure, band structure, and Brillouin zone

NASA Astrophysics Data System (ADS)

Hanson, Robert; Hinke, Ben; van Koevering, Matthew; Oses, Corey; Toher, Cormac; Hicks, David; Gossett, Eric; Plata Ramos, Jose; Curtarolo, Stefano; Aflow Collaboration

The AFLOW library is an open-access database for high throughput ab-initio calculations that serves as a resource for the dissemination of computational results in the area of materials science. Our project aims to create an interactive web-based visualization of any structure in the AFLOW database that has associate band structure data in a way that allows novel simultaneous exploration of the crystal structure, band structure, and Brillouin zone. Interactivity is obtained using two synchronized JSmol implementations, one for the crystal structure and one for the Brillouin zone, along with a D3-based band-structure diagram produced on the fly from data obtained from the AFLOW database. The current website portal (http://aflowlib.mems.duke.edu/users/jmolers/matt/website) allows interactive access and visualization of crystal structure, Brillouin zone and band structure for more than 55,000 inorganic crystal structures. This work was supported by the US Navy Office of Naval Research through a Broad Area Announcement administered by Duke University.

Heat flow bounds over the Cascadia margin derived from bottom simulating reflectors and implications for thermal models of subduction

NASA Astrophysics Data System (ADS)

Phrampus, Benjamin J.; Harris, Robert N.; Tréhu, Anne M.

2017-09-01

Understanding the thermal structure of the Cascadia subduction zone is important for understanding megathrust earthquake processes and seismogenic potential. Currently our understanding of the thermal structure of Cascadia is limited by a lack of high spatial resolution heat flow data and by poor understanding of thermal processes such as hydrothermal fluid circulation in the subducting basement, sediment thickening and dewatering, and frictional heat generation on the plate boundary. Here, using a data set of publically available seismic lines combined with new interpretations of bottom simulating reflector (BSR) distributions, we derive heat flow estimates across the Cascadia margin. Thermal models that account for hydrothermal circulation predict BSR-derived heat flow bounds better than purely conductive models, but still over-predict surface heat flows. We show that when the thermal effects of in-situ sedimentation and of sediment thickening and dewatering due to accretion are included, models with hydrothermal circulation become consistent with our BSR-derived heat flow bounds.

Effects of chemical form of sodium on the product characteristics of alkali lignin pyrolysis.

PubMed

Guo, Da-liang; Yuan, Hong-you; Yin, Xiu-li; Wu, Chuang-zhi; Wu, Shu-bin; Zhou, Zhao-qiu

2014-01-01

The effects of Na as organic bound form or as inorganic salts form on the pyrolysis products characteristics of alkali lignin were investigated by using thermogravimetric analyzer coupled with Fourier transform infrared spectrometry (TG-FTIR), tube furnace and thermo-gravimetric analyzer (TGA). Results of TG-FTIR and tube furnace indicated that the two chemical forms Na reduced the releasing peak temperature of CO and phenols leading to the peak temperature of the maximum mass loss rate shifted to low temperature zone. Furthermore, organic bound Na obviously improved the elimination of alkyl substituent leading to the yields of phenol and guaiacol increased, while inorganic Na increased the elimination of phenolic hydroxyl groups promoting the formation of ethers. It was also found the two chemical forms Na had different effects on the gasification reactivity of chars. For inorganic Na, the char conversion decreased with increasing the char forming temperature, while organic bound Na was opposite. Crown Copyright © 2013. Published by Elsevier Ltd. All rights reserved.

Updated RICE Bounds on Ultrahigh Energy Neutrino fluxes and interactions

NASA Astrophysics Data System (ADS)

Hussain, Shahid; McKay, Douglas

2006-04-01

We explore limits on low scale gravity models set by results from the Radio Ice Cherenkov Experiment's (RICE) ongoing search for cosmic ray neutrinos in the cosmogenic, or GZK, energy range. The bound on, MD, the fundamental scale of gravity, depends upon cosmogenic flux model, black hole formation and decay treatments, inclusion of graviton mediated elastic neutrino processes, and the number of large extra dimensions, d. We find bounds in the interval 0.9 TeV < MD < 10 TeV. Values d = 5, 6 and 7, for which laboratory and astrophysical bounds on LSG models are less restrictive, lead to essentially the same limits on MD.

Lieb-Robinson bound and locality for general markovian quantum dynamics.

PubMed

Poulin, David

2010-05-14

The Lieb-Robinson bound shows the existence of a maximum speed of signal propagation in discrete quantum mechanical systems with local interactions. This generalizes the concept of relativistic causality beyond field theory, and provides a powerful tool in theoretical condensed matter physics and quantum information science. Here, we extend the scope of this seminal result by considering general markovian quantum evolution, where we prove that an equivalent bound holds. In addition, we use the generalized bound to demonstrate that correlations in the stationary state of a Markov process decay on a length scale set by the Lieb-Robinson velocity and the system's relaxation time.

Emergent low-energy bound states in the two-orbital Hubbard model

DOE PAGES

Nunez-Fernandez, Y.; Kotliar, G.; Hallberg, K.

2018-03-30

A repulsive Coulomb interaction between electrons in different orbitals in correlated materials can give rise to bound quasiparticle states. We study the nonhybridized two-orbital Hubbard model with intra- (inter)orbital interaction U (U 12) and different bandwidths using an improved dynamical mean-field theory numerical technique which leads to reliable spectra on the real energy axis directly at zero temperature. We find that a finite density of states at the Fermi energy in one band is correlated with the emergence of well-defined quasiparticle states at excited energies Δ = U - U 12 in the other band. These excitations are interband holon-doublonmore » bound states. At the symmetric point U = U 12, the quasiparticle peaks are located at the Fermi energy, leading to a simultaneous and continuous Mott transition settling a long-standing controversy.« less

Emergent low-energy bound states in the two-orbital Hubbard model

NASA Astrophysics Data System (ADS)

Núñez-Fernández, Y.; Kotliar, G.; Hallberg, K.

2018-03-01

A repulsive Coulomb interaction between electrons in different orbitals in correlated materials can give rise to bound quasiparticle states. We study the nonhybridized two-orbital Hubbard model with intra- (inter)orbital interaction U (U12) and different bandwidths using an improved dynamical mean-field theory numerical technique which leads to reliable spectra on the real energy axis directly at zero temperature. We find that a finite density of states at the Fermi energy in one band is correlated with the emergence of well-defined quasiparticle states at excited energies Δ =U -U12 in the other band. These excitations are interband holon-doublon bound states. At the symmetric point U =U12 , the quasiparticle peaks are located at the Fermi energy, leading to a simultaneous and continuous Mott transition settling a long-standing controversy.

Mineralogical Controls on Carbon Cycling in a Floodplain Environment

NASA Astrophysics Data System (ADS)

Arora, B.; Dwivedi, D.; Steefel, C. I.; Spycher, N.; Fox, P. M.; Nico, P. S.

2016-12-01

With the overarching goal of understanding mineral-organic-microbe interactions on carbon and nutrient cycles, we are developing a reactive transport model that includes carbon (C) pools and transformations, a realistic treatment of protected C pools, multiple decomposition pathways, and radiocarbon (14C) dynamics. The objective of the modeling is to understand the impact of mineralogy on carbon turnover and residence times in a floodplain site in Rifle, CO. Previous studies have identified naturally reduced zones (NRZs) in the saturated zone of the Rifle site to be C hotspots and regions characterized by diffusion-limited transport and high rates of microbially-mediated biogeochemical reactions. Detailed characterization of the soil organic matter in both the NRZ and non-NRZ sediments at the Rifle site including radiocarbon dating, and extraction and chemical characterization of mineral-bound pool of organic matter, is used to inform the modeling. In this study, we describe the development of a coupled unsaturated-saturated flow and biogeochemical reactive transport model of the Rifle site along a two-dimensional cross-section (parallel to groundwater flow). The biogeochemical reaction network includes representations of bacterial and fungal activity, archetypal polymer and monomer carbon substrate groups, kinetic and equilibrium mineral precipitation and dissolution reactions, and aqueous and surface complexation. We use this model to explore fungal and bacterial community emergence at the site and compare organo-mineral interactions across NRZ and non-NRZ regions. Observed 14C profiles suggest that sediment-associated carbon in NRZ locations is much older than both the depositional age of the floodplain sediments and dissolved organic carbon in the groundwater. Model simulations were able to capture the observed soil organic matter (SOM) and Δ14C profiles across the Rifle site. Modeling results show higher lignin content in the NRZ sediments and greater Fe-associated organic carbon as compared to non-NRZ locations. Results therefore suggest that soil mineralogy constitutes a dominant control over organic carbon stocks and residence times. A mechanistic representation of soil mineral-organic-microbe interactions is necessary to reproduce SOM profiles at the site.

Optical properties of carbon nanotubes

NASA Astrophysics Data System (ADS)

Chen, Gugang

This thesis addresses the optical properties of novel carbon filamentary nanomaterials: single-walled carbon nanotubes (SWNTs), double-walled carbon nanotubes (DWNTs), and SWNTs with interior C60 molecules ("peapods"). Optical reflectance spectra of bundled SWNTs are discussed in terms of their electronic energy band structure. An Effective Medium Model for a composite material was found to provide a reasonable description of the spectra. Furthermore, we have learned from optical absorption studies of DWNTs and C60-peapods that the host tube and the encapsulant interact weakly; small shifts in interband absorption structure were observed. Resonant Raman scattering studies on SWNTs synthesized via the HiPCO process show that the "zone-folding" approximation for phonons and electrons works reasonably well, even for small diameter (d < 1 nm) tubes. The energy of optical transitions between van Hove singularities in the electronic density of states computed from the "zone-folding" model (with gamma0 = 2.9 eV) agree well with the resonant conditions for Raman scattering. Small diameter tubes were found to exhibit additional sharp Raman bands in the frequency range 500-1200 cm-1 with an, as yet, undetermined origin. The Raman spectrum of a DWNT was found to be well described by a superposition of the Raman spectra expected for inner and outer tubes, i.e., no charge transfer occurs and the weak van der Waals (vdW) interaction between tubes does not have significant impact on the phonons. A ˜7 cm-1 downshift of the small diameter, inner-tube tangential mode frequency was observed, however, but attributed to a tube wall curvature effect, rather than the vdW interaction. Finally, we studied the chemical doping of DWNTs, where the dopant (Br anions) is chemically bound to the outside of the outer tube. The doped DWNT system is a model for a cylindrical molecular capacitor. We found experimentally that 90% of the positive charge resides on the outer tube, so that most of electric field on the inner tube is screened, i.e., we have observed a molecular Faraday cage effect. A self-consistent theoretical model in the tight-binding approximation with a classical electrostatic energy term is in good agreement with our experimental results.

Saturated-unsaturated flow in a compressible leaky-unconfined aquifer

NASA Astrophysics Data System (ADS)

Mishra, Phoolendra K.; Vesselinov, Velimir V.; Kuhlman, Kristopher L.

2012-06-01

An analytical solution is developed for three-dimensional flow towards a partially penetrating large-diameter well in an unconfined aquifer bounded below by a leaky aquitard of finite or semi-infinite extent. The analytical solution is derived using Laplace and Hankel transforms, then inverted numerically. Existing solutions for flow in leaky unconfined aquifers neglect the unsaturated zone following an assumption of instantaneous drainage due to Neuman. We extend the theory of leakage in unconfined aquifers by (1) including water flow and storage in the unsaturated zone above the water table, and (2) allowing the finite-diameter pumping well to partially penetrate the aquifer. The investigation of model-predicted results shows that aquitard leakage leads to significant departure from the unconfined solution without leakage. The investigation of dimensionless time-drawdown relationships shows that the aquitard drawdown also depends on unsaturated zone properties and the pumping-well wellbore storage effects.

Radial flow towards well in leaky unconfined aquifer

NASA Astrophysics Data System (ADS)

Mishra, P. K.; Kuhlman, K. L.

2012-12-01

An analytical solution is developed for three-dimensional flow towards a partially penetrating large- diameter well in an unconfined aquifer bounded below by a leaky aquitard of finite or semi-infinite extent. The analytical solution is derived using Laplace and Hankel transforms, then inverted numerically. Existing solutions for flow in leaky unconfined aquifers neglect the unsaturated zone following an assumption of instantaneous drainage due to Neuman. We extend the theory of leakage in unconfined aquifers by (1) including water flow and storage in the unsaturated zone above the water table, and (2) allowing the finite-diameter pumping well to partially penetrate the aquifer. The investigation of model-predicted results shows that aquitard leakage leads to significant departure from the unconfined solution without leakage. The investigation of dimensionless time-drawdown relationships shows that the aquitard drawdown also depends on unsaturated zone properties and the pumping-well wellbore storage effects.

What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf.

PubMed

Filchtinski, Daniel; Sharabi, Oz; Rüppel, Alma; Vetter, Ingrid R; Herrmann, Christian; Shifman, Julia M

2010-06-11

Ras is a small GTP-binding protein that is an essential molecular switch for a wide variety of signaling pathways including the control of cell proliferation, cell cycle progression and apoptosis. In the GTP-bound state, Ras can interact with its effectors, triggering various signaling cascades in the cell. In the GDP-bound state, Ras looses its ability to bind to known effectors. The interaction of the GTP-bound Ras (Ras(GTP)) with its effectors has been studied intensively. However, very little is known about the much weaker interaction between the GDP-bound Ras (Ras(GDP)) and Ras effectors. We investigated the factors underlying the nucleotide-dependent differences in Ras interactions with one of its effectors, Raf kinase. Using computational protein design, we generated mutants of the Ras-binding domain of Raf kinase (Raf) that stabilize the complex with Ras(GDP). Most of our designed mutations narrow the gap between the affinity of Raf for Ras(GTP) and Ras(GDP), producing the desired shift in binding specificity towards Ras(GDP). A combination of our best designed mutation, N71R, with another mutation, A85K, yielded a Raf mutant with a 100-fold improvement in affinity towards Ras(GDP). The Raf A85K and Raf N71R/A85K mutants were used to obtain the first high-resolution structures of Ras(GDP) bound to its effector. Surprisingly, these structures reveal that the loop on Ras previously termed the switch I region in the Ras(GDP).Raf mutant complex is found in a conformation similar to that of Ras(GTP) and not Ras(GDP). Moreover, the structures indicate an increased mobility of the switch I region. This greater flexibility compared to the same loop in Ras(GTP) is likely to explain the natural low affinity of Raf and other Ras effectors to Ras(GDP). Our findings demonstrate that an accurate balance between a rigid, high-affinity conformation and conformational flexibility is required to create an efficient and stringent molecular switch. Copyright 2010 Elsevier Ltd. All rights reserved.

Does zoning winter recreationists reduce recreation conflict?

Treesearch

Aubrey Miller; Jerry J. Vaske; John R. Squires; Lucretia E. Olson

2016-01-01

Parks and protected area managers use zoning to decrease interpersonal conflict between recreationists. Zoning, or segregation, of recreation - often by nonmotorized and motorized activity - is designed to limit physical interaction while providing recreation opportunities to both groups. This article investigated the effectiveness of zoning to reduce recreation...

Does zoning winter recreationists reduce recreation conflict?

Treesearch

Aubrey D. Miller; Jerry J. Vaske; John R. Squires; Lucretia E. Olson; Elizabeth K. Roberts

2017-01-01

Parks and protected area managers use zoning to decrease interpersonal conflict between recreationists. Zoning, or segregation, of recreation - often by nonmotorized and motorized activity - is designed to limit physical interaction while providing recreation opportunities to both groups. This article investigated the effectiveness of zoning to reduce recreation...

Structural terranes and their relationships in Sierra Leone

NASA Astrophysics Data System (ADS)

Williams, Howard R.; Culver, Stephen J.

Sierra Leone, composed mainly of Archaean granite-greenstone terrane, is bounded in the west by a westward dipping zone of intense, ductile, simple shear deformation which produced very fine-grained, high grade rocks. This zone has been interpreted as a possible Archaean suture developed following the collision of the Guyana Shield and the West African Craton. Granulite facies metamorphic supracrustals of the Kasila Group occur to the west of the sheared zone. Marampa Group lower grade metamorphics were thrust eastwards during the collision event. Late Precambrian rifting, well to the east of the mylonite zone and subsequent compression, preserved very low grade to unmetamorphosed Rokel River Group sediments and volcanics. Limited Pan-African tectonic transport of Archaean and late Precambrian material was again toward the east. All structural and stratigraphic units can be traced northward into Guinea where they disappear beneath the Paleozoic sediments of the Bové Basin. To the south, the Kasila Group, the granite-greenstone terrane and the mylonitized zone can be traced into Liberia. The Gibi Mountain Formation of Liberia is probably laterally equivalent to the lower portions of the Rokel River Group. This interpretation of the geology of Sierra Leone differs greatly from that of Guinea where the mylonitized zone, associated with a positive gravity anomaly, has been interpreted as a suture zone resulting from Pan-African continent-continent collision.

Toward Broadband Source Modeling for the Himalayan Collision Zone

NASA Astrophysics Data System (ADS)

Miyake, H.; Koketsu, K.; Kobayashi, H.; Sharma, B.; Mishra, O. P.; Yokoi, T.; Hayashida, T.; Bhattarai, M.; Sapkota, S. N.

2017-12-01

The Himalayan collision zone is characterized by the significant tectonic setting. There are earthquakes with low-angle thrust faulting as well as continental outerrise earthquakes. Recently several historical earthquakes have been identified by active fault surveys [e.g., Sapkota et al., 2013]. We here investigate source scaling for the Himalayan collision zone as a fundamental factor to construct source models toward seismic hazard assessment. As for the source scaling for collision zones, Yen and Ma [2011] reported the subduction-zone source scaling in Taiwan, and pointed out the non-self-similar scaling due to the finite crustal thickness. On the other hand, current global analyses of stress drop do not show abnormal values for the continental collision zones [e.g., Allmann and Shearer, 2009]. Based on the compile profiling of finite thickness of the curst and dip angle variations, we discuss whether the bending exists for the Himalayan source scaling and implications on stress drop that will control strong ground motions. Due to quite low-angle dip faulting, recent earthquakes in the Himalayan collision zone showed the upper bound of the current source scaling of rupture area vs. seismic moment (< Mw 8.0), and does not show significant bending of the source scaling. Toward broadband source modeling for ground motion prediction, we perform empirical Green's function simulations for the 2009 Butan and 2015 Gorkha earthquake sequence to quantify both long- and short-period source spectral levels.

Approaches to characterizing biogeochemistry effects of groundwater and surface water interaction at the riparian interface

EPA Science Inventory

Groundwater-surface water interaction (GSI) in riparian ecosystems strongly influences biological activity that controls nutrient flux and processes. Shallow groundwater in riparian zones is a hot spot for nitrogen removal processes, a storage zone for solutes, and a target for ...

Alternate binding modes for a ubiquitin-SH3 domain interaction studied by NMR spectroscopy.

PubMed

Korzhnev, Dmitry M; Bezsonova, Irina; Lee, Soyoung; Chalikian, Tigran V; Kay, Lewis E

2009-02-20

Surfaces of many binding domains are plastic, enabling them to interact with multiple targets. An understanding of how they bind and recognize their partners is therefore predicated on characterizing such dynamic interfaces. Yet, these interfaces are difficult to study by standard biophysical techniques that often 'freeze' out conformations or that produce data averaged over an ensemble of conformers. In this study, we used NMR spectroscopy to study the interaction between the C-terminal SH3 domain of CIN85 and ubiquitin that involves the 'classical' binding sites of these proteins. Notably, chemical shift titration data of one target with another and relaxation dispersion data that report on millisecond time scale exchange processes are both well fit to a simple binding model in which free protein is in equilibrium with a single bound conformation. However, dissociation constants and chemical shift differences between free and bound states measured from both classes of experiment are in disagreement. It is shown that the data can be reconciled by considering three-state binding models involving two distinct bound conformations. By combining titration and dispersion data, kinetic and thermodynamic parameters of the three-state binding reaction are obtained along with chemical shifts for each state. A picture emerges in which one bound conformer has increased entropy and enthalpy relative to the second and chemical shifts similar to that of the free state, suggesting a less packed interface. This study provides an example of the interplay between entropy and enthalpy to fine-tune molecular interactions involving the same binding surfaces.

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets

PubMed Central

De Kumar, Bony; Parker, Hugo J.; Paulson, Ariel; Parrish, Mark E.; Pushel, Irina; Singh, Narendra Pratap; Zhang, Ying; Slaughter, Brian D.; Unruh, Jay R.; Florens, Laurence; Zeitlinger, Julia; Krumlauf, Robb

2017-01-01

Hoxa1 has diverse functional roles in differentiation and development. We identify and characterize properties of regions bound by HOXA1 on a genome-wide basis in differentiating mouse ES cells. HOXA1-bound regions are enriched for clusters of consensus binding motifs for HOX, PBX, and MEIS, and many display co-occupancy of PBX and MEIS. PBX and MEIS are members of the TALE family and genome-wide analysis of multiple TALE members (PBX, MEIS, TGIF, PREP1, and PREP2) shows that nearly all HOXA1 targets display occupancy of one or more TALE members. The combinatorial binding patterns of TALE proteins define distinct classes of HOXA1 targets, which may create functional diversity. Transgenic reporter assays in zebrafish confirm enhancer activities for many HOXA1-bound regions and the importance of HOX-PBX and TGIF motifs for their regulation. Proteomic analyses show that HOXA1 physically interacts on chromatin with PBX, MEIS, and PREP family members, but not with TGIF, suggesting that TGIF may have an independent input into HOXA1-bound regions. Therefore, TALE proteins appear to represent a wide repertoire of HOX cofactors, which may coregulate enhancers through distinct mechanisms. We also discover extensive auto- and cross-regulatory interactions among the Hoxa1 and TALE genes, indicating that the specificity of HOXA1 during development may be regulated though a complex cross-regulatory network of HOXA1 and TALE proteins. This study provides new insight into a regulatory network involving combinatorial interactions between HOXA1 and TALE proteins. PMID:28784834

Geochemical and microstructural evidence for interseismic changes in fault zone permeability and strength, Alpine Fault, New Zealand

NASA Astrophysics Data System (ADS)

Boulton, Carolyn; Menzies, Catriona D.; Toy, Virginia G.; Townend, John; Sutherland, Rupert

2017-01-01

Oblique dextral motion on the central Alpine Fault in the last circa 5 Ma has exhumed garnet-oligoclase facies mylonitic fault rocks from ˜35 km depth. During exhumation, deformation, accompanied by fluid infiltration, has generated complex lithological variations in fault-related rocks retrieved during Deep Fault Drilling Project (DFDP-1) drilling at Gaunt Creek, South Island, New Zealand. Lithological, geochemical, and mineralogical results reveal that the fault comprises a core of highly comminuted cataclasites and fault gouges bounded by a damage zone containing cataclasites, protocataclasites, and fractured mylonites. The fault core-alteration zone extends ˜20-30 m from the principal slip zone (PSZ) and is characterized by alteration of primary phases to phyllosilicate minerals. Alteration associated with distinct mineral phases occurred proximal the brittle-to-plastic transition (T ≤ 300-400°C, 6-10 km depth) and at shallow depths (T = 20-150°C, 0-3 km depth). Within the fault core-alteration zone, fractures have been sealed by precipitation of calcite and phyllosilicates. This sealing has decreased fault normal permeability and increased rock mass competency, potentially promoting interseismic strain buildup.

Predicting Short-Term Remembering as Boundedly Optimal Strategy Choice

ERIC Educational Resources Information Center

Howes, Andrew; Duggan, Geoffrey B.; Kalidindi, Kiran; Tseng, Yuan-Chi; Lewis, Richard L.

2016-01-01

It is known that, on average, people adapt their choice of memory strategy to the subjective utility of interaction. What is not known is whether an individual's choices are "boundedly optimal." Two experiments are reported that test the hypothesis that an individual's decisions about the distribution of remembering between internal and…

Crystal Structures of SlyA Protein, a Master Virulence Regulator of Salmonella, in Free and DNA-bound States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolan, Kyle T.; Duguid, Erica M.; He, Chuan

2011-11-17

SlyA is a master virulence regulator that controls the transcription of numerous genes in Salmonella enterica. We present here crystal structures of SlyA by itself and bound to a high-affinity DNA operator sequence in the slyA gene. SlyA interacts with DNA through direct recognition of a guanine base by Arg-65, as well as interactions between conserved Arg-86 and the minor groove and a large network of non-base-specific contacts with the sugar phosphate backbone. Our structures, together with an unpublished structure of SlyA bound to the small molecule effector salicylate (Protein Data Bank code 3DEU), reveal that, unlike many other MarRmore » family proteins, SlyA dissociates from DNA without large conformational changes when bound to this effector. We propose that SlyA and other MarR global regulators rely more on indirect readout of DNA sequence to exert control over many genes, in contrast to proteins (such as OhrR) that recognize a single operator.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blennow, Mattias; Herrero-Garcia, Juan; Schwetz, Thomas, E-mail: emb@kth.se, E-mail: juhg@kth.se, E-mail: schwetz@fysik.su.se

We show that a positive signal in a dark matter (DM) direct detection experiment can be used to place a lower bound on the DM capture rate in the Sun, independent of the DM halo. For a given particle physics model and DM mass we obtain a lower bound on the capture rate independent of the local DM density, velocity distribution, galactic escape velocity, as well as the scattering cross section. We illustrate this lower bound on the capture rate by assuming that upcoming direct detection experiments will soon obtain a significant signal. When comparing the lower bound on themore » capture rate with limits on the high-energy neutrino flux from the Sun from neutrino telescopes, we can place upper limits on the branching fraction of DM annihilation channels leading to neutrinos. With current data from IceCube and Super-Kamiokande non-trivial limits can be obtained for spin-dependent interactions and direct annihilations into neutrinos. In some cases also annihilations into ττ or b b start getting constrained. For spin-independent interactions current constraints are weak, but they may become interesting for data from future neutrino telescopes.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blennow, Mattias; Herrero-Garcia, Juan; Schwetz, Thomas

We show that a positive signal in a dark matter (DM) direct detection experiment can be used to place a lower bound on the DM capture rate in the Sun, independent of the DM halo. For a given particle physics model and DM mass we obtain a lower bound on the capture rate independent of the local DM density, velocity distribution, galactic escape velocity, as well as the scattering cross section. We illustrate this lower bound on the capture rate by assuming that upcoming direct detection experiments will soon obtain a significant signal. When comparing the lower bound on themore » capture rate with limits on the high-energy neutrino flux from the Sun from neutrino telescopes, we can place upper limits on the branching fraction of DM annihilation channels leading to neutrinos. With current data from IceCube and Super-Kamiokande non-trivial limits can be obtained for spin-dependent interactions and direct annihilations into neutrinos. In some cases also annihilations into ττ or bb start getting constrained. For spin-independent interactions current constraints are weak, but they may become interesting for data from future neutrino telescopes.« less

The Charm and Beauty of Strong Interactions

NASA Astrophysics Data System (ADS)

El-Bennich, Bruno

2018-01-01

We briefly review common features and overlapping issues in hadron and flavor physics focussing on continuum QCD approaches to heavy bound states, their mass spectrum and weak decay constants in different strong interaction models.

GRID-seq reveals the global RNA-chromatin interactome

PubMed Central

Li, Xiao; Zhou, Bing; Chen, Liang; Gou, Lan-Tao; Li, Hairi; Fu, Xiang-Dong

2017-01-01

Higher eukaryotic genomes are bound by a large number of coding and non-coding RNAs, but approaches to comprehensively map the identity and binding sites of these RNAs are lacking. Here we report a method to in situ capture global RNA interactions with DNA by deep sequencing (GRID-seq), which enables the comprehensive identification of the entire repertoire of chromatin-interacting RNAs and their respective binding sites. In human, mouse and Drosophila cells, we detected a large set of tissue-specific coding and non-coding RNAs that are bound to active promoters and enhancers, especially super-enhancers. Assuming that most mRNA-chromatin interactions indicate the physical proximity of a promoter and an enhancer, we constructed a three-dimensional global connectivity map of promoters and enhancers, revealing transcription activity-linked genomic interactions in the nucleus. PMID:28922346

Soliton interactions and complexes for coupled nonlinear Schrödinger equations.

PubMed

Jiang, Yan; Tian, Bo; Liu, Wen-Jun; Sun, Kun; Li, Min; Wang, Pan

2012-03-01

Under investigation in this paper are the coupled nonlinear Schrödinger (CNLS) equations, which can be used to govern the optical-soliton propagation and interaction in such optical media as the multimode fibers, fiber arrays, and birefringent fibers. By taking the 3-CNLS equations as an example for the N-CNLS ones (N≥3), we derive the analytic mixed-type two- and three-soliton solutions in more general forms than those obtained in the previous studies with the Hirota method and symbolic computation. With the choice of parameters for those soliton solutions, soliton interactions and complexes are investigated through the asymptotic and graphic analysis. Soliton interactions and complexes with the bound dark solitons in a mode or two modes are observed, including that (i) the two bright solitons display the breatherlike structures while the two dark ones stay parallel, (ii) the two bright and dark solitons all stay parallel, and (iii) the states of the bound solitons change from the breatherlike structures to the parallel one even with the distance between those solitons smaller than that before the interaction with the regular one soliton. Asymptotic analysis is also used to investigate the elastic and inelastic interactions between the bound solitons and the regular one soliton. Furthermore, some discussions are extended to the N-CNLS equations (N>3). Our results might be helpful in such applications as the soliton switch, optical computing, and soliton amplification in the nonlinear optics.

Structural mechanism underlying capsaicin binding and activation of TRPV1 ion channel

PubMed Central

Cheng, Wei; Yang, Wei; Yu, Peilin; Song, Zhenzhen; Yarov-Yarovoy, Vladimir; Zheng, Jie

2015-01-01

Capsaicin bestows spiciness by activating TRPV1 channel with exquisite potency and selectivity. Capsaicin-bound channel structure was previously resolved by cryo-EM at 4.2-to-4.5 Å resolution, however important details required for mechanistic understandings are unavailable: capsaicin was registered as a small electron density, reflecting neither its chemical structure nor specific ligand-channel interactions. We obtained the missing atomic-level details by iterative computation, which were confirmed by systematic site-specific functional tests. We observed that the bound capsaicin takes “tail-up, head-down” configurations. The vanillyl and amide groups form specific interactions to anchor its bound position, while the aliphatic tail may sample a range of conformations, making it invisible in cryo-EM images. Capsaicin stabilizes the open state by “pull-and-contact” interactions between the vanillyl group and the S4-S5 linker. Our study provided a structural mechanism for the agonistic function of capsaicin and its analogs, and demonstrated an effective approach to obtain atomic level information from cryo-EM structures. PMID:26053297

Synchrotron X-ray footprinting as a method to visualize water in proteins

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gupta, Sayan; Feng, Jun; Chan, Leanne Jade G.

The vast majority of biomolecular processes are controlled or facilitated by water interactions. In enzymes, regulatory proteins, membrane-bound receptors and ion-channels, water bound to functionally important residues creates hydrogen-bonding networks that underlie the mechanism of action of the macromolecule. High-resolution X-ray structures are often difficult to obtain with many of these classes of proteins because sample conditions, such as the necessity of detergents, often impede crystallization. Other biophysical techniques such as neutron scattering, nuclear magnetic resonance and Fourier transform infrared spectroscopy are useful for studying internal water, though each has its own advantages and drawbacks, and often a hybrid approachmore » is required to address important biological problems associated with protein–water interactions. One major area requiring more investigation is the study of bound water molecules which reside in cavities and channels and which are often involved in both the structural and functional aspects of receptor, transporter and ion channel proteins. Recently, significant progress has been made in synchrotron-based radiolytic labeling and mass spectroscopy techniques for both the identification of bound waters and for characterizing the role of water in protein conformational changes at a high degree of spatial and temporal resolution. Finally, here the latest developments and future capabilities of this method for investigating water–protein interactions and its synergy with other synchrotron-based methods are discussed.« less

Synchrotron X-ray footprinting as a method to visualize water in proteins

DOE PAGES

Gupta, Sayan; Feng, Jun; Chan, Leanne Jade G.; ...

2016-07-27

The vast majority of biomolecular processes are controlled or facilitated by water interactions. In enzymes, regulatory proteins, membrane-bound receptors and ion-channels, water bound to functionally important residues creates hydrogen-bonding networks that underlie the mechanism of action of the macromolecule. High-resolution X-ray structures are often difficult to obtain with many of these classes of proteins because sample conditions, such as the necessity of detergents, often impede crystallization. Other biophysical techniques such as neutron scattering, nuclear magnetic resonance and Fourier transform infrared spectroscopy are useful for studying internal water, though each has its own advantages and drawbacks, and often a hybrid approachmore » is required to address important biological problems associated with protein–water interactions. One major area requiring more investigation is the study of bound water molecules which reside in cavities and channels and which are often involved in both the structural and functional aspects of receptor, transporter and ion channel proteins. Recently, significant progress has been made in synchrotron-based radiolytic labeling and mass spectroscopy techniques for both the identification of bound waters and for characterizing the role of water in protein conformational changes at a high degree of spatial and temporal resolution. Finally, here the latest developments and future capabilities of this method for investigating water–protein interactions and its synergy with other synchrotron-based methods are discussed.« less

Active Work Zone Safety Using Emerging Technologies 2017.

DOT National Transportation Integrated Search

2017-07-01

Highway construction work zones are hazardous environments characterized by a dynamic and limited work space. A host of interactions between workers, passing commuter vehicles, and moving construction equipment occurs in highway work zones fostering ...

Mercury and methylmercury dynamics in the hyporheic zone of an Oregon stream

USGS Publications Warehouse

Hinkle, Stephen R.; Bencala, Kenneth E.; Wentz, Dennis A.; Krabbenhoft, David P.

2014-01-01

The role of the hyporheic zone in mercury (Hg) cycling has received limited attention despite the biogeochemically active nature of this zone and, thus, its potential to influence Hg behavior in streams. An assessment of Hg geochemistry in the hyporheic zone of a coarse-grained island in the Coast Fork Willamette River in Oregon, USA, illustrates the spatially dynamic nature of this region of the stream channel for Hg mobilization and attenuation. Hyporheic flow through the island was evident from the water-table geometry and supported by hyporheic-zone chemistry distinct from that of the bounding groundwater system. Redox-indicator species changed abruptly along a transect through the hyporheic zone, indicating a biogeochemically reactive stream/hyporheic-zone continuum. Dissolved organic carbon (DOC), total Hg, and methylmercury (MeHg) concentrations increased in the upgradient portion of the hyporheic zone and decreased in the downgradient region. Total Hg (collected in 2002 and 2003) and MeHg (collected in 2003) were correlated with DOC in hyporheic-zone samples: r2=0.63 (total Hg-DOC, 2002), 0.73 (total Hg-DOC, 2003), and 0.94 (MeHg-DOC, 2003). Weaker Hg/DOC association in late summer 2002 than in early summer 2003 may reflect seasonal differences in DOC reactivity. Observed correlations between DOC and both total Hg and MeHg reflect the importance of DOC for Hg mobilization, transport, and fate in this hyporheic zone. Correlations with DOC provide a framework for conceptualizing and quantifying Hg and MeHg dynamics in this region of the stream channel, and provide a refined conceptual model of the role hyporheic zones may play in aquatic ecosystems.

Functions Character

NASA Astrophysics Data System (ADS)

Dugave, Maxime; Göhmann, Frank; Kozlowski, Karol Kajetan

2014-04-01

We establish several properties of the solutions to the linear integral equations describing the infinite volume properties of the XXZ spin-1/2 chain in the disordered regime. In particular, we obtain lower and upper bounds for the dressed energy, dressed charge and density of Bethe roots. Furthermore, we establish that given a fixed external magnetic field (or a fixed magnetization) there exists a unique value of the boundary of the Fermi zone.

14 CFR 99.45 - Alaska ADIZ.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 14 Aeronautics and Space 2 2010-01-01 2010-01-01 false Alaska ADIZ. 99.45 Section 99.45 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) AIR TRAFFIC... Zones § 99.45 Alaska ADIZ. The area is bounded by a line from 54°00′N; 136°00′W; 56°57′N; 144°00′W; 57...

33 CFR 100.1104 - Southern California annual marine events for the Los Angeles Long Beach Captain of the Port Zone.

Code of Federal Regulations, 2012 CFR

2012-07-01

... to Ensenada Yacht Race Sponsor Newport Ocean Sailing Association. Event Description Sailing vessel race; open ocean. Date Fourth Friday in April. Location Newport Beach, CA. Regulated Area Starting area only. All waters of the Pacific Ocean near Newport Beach, CA bounded by a line starting 33°35′18″ N...

Partitioning of dissolved organic matter-bound mercury between a hydrophobic surface and polysulfide-rubber polymer.

PubMed

Kim, Eun-Ah; Luthy, Richard G

2011-11-01

This study investigated the role of dissolved organic matter on mercury partitioning between a hydrophobic surface (polyethylene, PE) and a reduced sulfur-rich surface (polysulfide rubber, PSR). Comparative sorption studies employed polyethylene and polyethylene coated with PSR for reactions with DOM-bound mercuric ions. These studies revealed that PSR enhanced the Hg-DOM removal from water when DOM was Suwannee River natural organic matter (NOM), fulvic acid (FA), or humic acid (HA), while the same amount of 1,3-propanedithiol-bound mercuric ion was removed by both PE and PSR-PE. The differences for Hg-DOM removal efficiencies between PE and PSR-PE varied depending on which DOM was bound to mercuric ion as suggested by the PE/water and PSR-PE/water partition coefficients for mercury. The surface concentrations of mercury on PE and PSR-PE with the same DOM measured by x-ray photoelectron spectroscopy were similar, which indicated the comparable amounts of immobilized mercury on PE and PSR-PE being exposed to the aqueous phase. With these observations, two major pathways for the immobilization reactions between PSR-PE and Hg-DOM were examined: 1) adsorption of Hg-DOM on PE by hydrophobic interactions between DOM and PE, and 2) addition reaction of Hg-DOM onto PSR by a complexation reaction between Hg and PSR. The percent contribution of each pathway was derived from a mass balance and the ratios among aqueous mercury, PE-bound Hg-DOM, and PSR-bound Hg-DOM concentrations. The results indicate strong binding of mercuric ion with both dissolved organic matter and PSR polymer. The FT-IR examination of Hg-preloaded-PSR-PEs after the reaction with DOM corroborated a strong interaction between mercuric ion and 1,3-propanedithiol compared to Hg-HA, Hg-FA, or Hg-NOM interactions. Copyright © 2011 Elsevier Ltd. All rights reserved.

Partitioning of dissolved organic matter-bound mercury between a hydrophobic surface and polysulfide-rubber polymer

PubMed Central

Kim, Eun-Ah

2011-01-01

This study investigated the role of dissolved organic matter on mercury partitioning between a hydrophobic surface (polyethylene, PE) and a reduced sulfur-rich surface (polysulfide rubber, PSR). Comparative sorption studies employed polyethylene and polyethylene coated with PSR for reactions with DOM-bound mercuric ions. These studies revealed that PSR enhanced the Hg-DOM removal from water when DOM was Suwannee River natural organic matter (NOM), fulvic acid (FA), or humic acid (HA), while the same amount of 1,3-propanedithiol-bound mercuric ion was removed by both PE and PSR-PE. The differences for Hg-DOM removal efficiencies between PE and PSR-PE varied depending on which DOM was bound to mercuric ion as suggested by the PE/water and PSR-PE/water partition coefficients for mercury. The surface concentrations of mercury on PE and PSR-PE with the same DOM measured by x-ray – photoelectron spectroscopy were similar, which indicated the comparable amounts of immobilized mercury on PE and PSR-PE being exposed to the aqueous phase. With these observations, two major pathways for the immobilization reactions between PSR-PE and Hg- DOM were examined: 1) adsorption of Hg-DOM on PE by hydrophobic interactions between DOM and PE, and 2) addition reaction of Hg-DOM onto PSR by a complexation reaction between Hg and PSR. The percent contribution of each pathway was derived from a mass balance and the ratios among aqueous mercury, PE-bound Hg-DOM, and PSR-bound Hg-DOM concentrations. The results indicate strong binding of mercuric ion with both dissolved organic matter and PSR polymer. The FT-IR examination of Hg-preloaded-PSR-PEs after the reaction with DOM corroborated a strong interaction between mercuric ion and 1,3-propanedithiol compared to Hg-HA, Hg-FA, or Hg-NOM interactions. PMID:21872900

Synthetic velocity gradient map of the San Francisco Bay region, California, supports use of average block velocities to estimate fault slip rate where effective locking depth is small relative to inter-fault distance

NASA Astrophysics Data System (ADS)

Graymer, R. W.; Simpson, R. W.

2014-12-01

Graymer and Simpson (2013, AGU Fall Meeting) showed that in a simple 2D multi-fault system (vertical, parallel, strike-slip faults bounding blocks without strong material property contrasts) slip rate on block-bounding faults can be reasonably estimated by the difference between the mean velocity of adjacent blocks if the ratio of the effective locking depth to the distance between the faults is 1/3 or less ("effective" locking depth is a synthetic parameter taking into account actual locking depth, fault creep, and material properties of the fault zone). To check the validity of that observation for a more complex 3D fault system and a realistic distribution of observation stations, we developed a synthetic suite of GPS velocities from a dislocation model, with station location and fault parameters based on the San Francisco Bay region. Initial results show that if the effective locking depth is set at the base of the seismogenic zone (about 12-15 km), about 1/2 the interfault distance, the resulting synthetic velocity observations, when clustered, do a poor job of returning the input fault slip rates. However, if the apparent locking depth is set at 1/2 the distance to the base of the seismogenic zone, or about 1/4 the interfault distance, the synthetic velocity field does a good job of returning the input slip rates except where the fault is in a strong restraining orientation relative to block motion or where block velocity is not well defined (for example west of the northern San Andreas Fault where there are no observations to the west in the ocean). The question remains as to where in the real world a low effective locking depth could usefully model fault behavior. Further tests are planned to define the conditions where average cluster-defined block velocities can be used to reliably estimate slip rates on block-bounding faults. These rates are an important ingredient in earthquake hazard estimation, and another tool to provide them should be useful.

Are there any narrow K--nuclear states?

NASA Astrophysics Data System (ADS)

Hrtánková, Jaroslava; Mareš, Jiří

2017-07-01

We performed self-consistent calculations of K--nuclear quasi-bound states using a single-nucleon K- optical potential derived from chiral meson-baryon coupled-channel interaction models, supplemented by a phenomenological K- multinucleon potential introduced recently to achieve good fits to kaonic atom data [1]. Our calculations show that the effect of K- multinucleon interactions on K- widths in nuclei is decisive. The resulting widths are considerably larger than corresponding binding energies. Moreover, when the density dependence of the K--multinucleon interactions derived in the fits of kaonic atoms is extended to the nuclear interior, the only two models acceptable after imposing as additional constraint the single-nucleon fraction of K- absorption at rest do not yield any kaonic nuclear bound state in majority of considered nuclei.

Some peculiarities of interactions of weakly bound lithium nuclei at near-barrier energies

NASA Astrophysics Data System (ADS)

Kabyshev, A. M.; Kuterbekov, K. A.; Sobolev, Yu G.; Penionzhkevich, Yu E.; Kubenova, M. M.; Azhibekov, A. K.; Mukhambetzhan, A. M.; Lukyanov, S. M.; Maslov, V. A.; Kabdrakhimova, G. D.

2018-02-01

This paper presents new experimental data on the total cross sections of 9Li + 28Si reactions at low energies as well as the analysis of previously obtained data for 6,7Li. Based on a large collection of data (authors’ and literature data) we carried out a comparative analysis of the two main experimental interaction cross sections (angular distributions of the differential cross sections and total reaction cross sections) for weakly bound lithium (6-9Li, 11Li) nuclei in the framework of Kox parameterization and the macroscopic optical model. We identified specific features of these interactions and predicted the experimental trend in the total reaction cross sections for Li isotopes at energies close to the Coulomb barrier.

Finite-Size Effects on the Behavior of the Susceptibility in van der Waals Films Bounded by Strongly Absorbing Substrates

NASA Technical Reports Server (NTRS)

Dantchev, Daniel; Rudnick, Joseph; Barmatz, M.

2007-01-01

We study critical point finite-size effects in the case of the susceptibility of a film in which interactions are characterized by a van der Waals-type power law tail. The geometry is appropriate to a slab-like system with two bounding surfaces. Boundary conditions are consistent with surfaces that both prefer the same phase in the low temperature, or broken symmetry, state. We take into account both interactions within the system and interactions between the constituents of the system and the material surrounding it. Specific predictions are made with respect to the behavior of 3He and 4He films in the vicinity of their respective liquid-vapor critical points.

Backscattering measurement of 6He on 209Bi: Critical interaction distance

NASA Astrophysics Data System (ADS)

Guimarães, V.; Kolata, J. J.; Aguilera, E. F.; Howard, A.; Roberts, A.; Becchetti, F. D.; Torres-Isea, R. O.; Riggins, A.; Febrarro, M.; Scarduelli, V.; de Faria, P. N.; Monteiro, D. S.; Huiza, J. F. P.; Arazi, A.; Hinnefeld, J.; Moro, A. M.; Rossi, E. S.; Morcelle, V.; Barioni, A.

2016-06-01

An elastic backscattering experiment has been performed at energies below the Coulomb barrier to investigate static and dynamic effects in the interaction of 6He with 209Bi. The measured cross sections are presented in terms of the d σ /d σR u t h ratio, as a function of the distance of closest approach on a Rutherford trajectory. The data are compared with a three-body CDCC calculation and good agreement is observed. In addition, the critical distance of interaction was extracted. A larger value was obtained for the exotic 6He nucleus as compared with the weakly bound 6Li and 9Be nuclei and the tightly bound 4He12C, and 16O nuclei.

Fault-zone structure and weakening processes in basin-scale reverse faults: The Moonlight Fault Zone, South Island, New Zealand

NASA Astrophysics Data System (ADS)

Alder, S.; Smith, S. A. F.; Scott, J. M.

2016-10-01

The >200 km long Moonlight Fault Zone (MFZ) in southern New Zealand was an Oligocene basin-bounding normal fault zone that reactivated in the Miocene as a high-angle reverse fault (present dip angle 65°-75°). Regional exhumation in the last c. 5 Ma has resulted in deep exposures of the MFZ that present an opportunity to study the structure and deformation processes that were active in a basin-scale reverse fault at basement depths. Syn-rift sediments are preserved only as thin fault-bound slivers. The hanging wall and footwall of the MFZ are mainly greenschist facies quartzofeldspathic schists that have a steeply-dipping (55°-75°) foliation subparallel to the main fault trace. In more fissile lithologies (e.g. greyschists), hanging-wall deformation occurred by the development of foliation-parallel breccia layers up to a few centimetres thick. Greyschists in the footwall deformed mainly by folding and formation of tabular, foliation-parallel breccias up to 1 m wide. Where the hanging-wall contains more competent lithologies (e.g. greenschist facies metabasite) it is laced with networks of pseudotachylyte that formed parallel to the host rock foliation in a damage zone extending up to 500 m from the main fault trace. The fault core contains an up to 20 m thick sequence of breccias, cataclasites and foliated cataclasites preserving evidence for the progressive development of interconnected networks of (partly authigenic) chlorite and muscovite. Deformation in the fault core occurred by cataclasis of quartz and albite, frictional sliding of chlorite and muscovite grains, and dissolution-precipitation. Combined with published friction and permeability data, our observations suggest that: 1) host rock lithology and anisotropy were the primary controls on the structure of the MFZ at basement depths and 2) high-angle reverse slip was facilitated by the low frictional strength of fault core materials. Restriction of pseudotachylyte networks to the hanging-wall of the MFZ further suggests that the wide, phyllosilicate-rich fault core acted as an efficient hydrological barrier, resulting in a relatively hydrous footwall and fault core but a relatively dry hanging-wall.

Structural framework of a major intracontinental orogenic termination zone: The easternmost Tien Shan, China

USGS Publications Warehouse

Cunningham, D.; Owen, L.A.; Snee, L.W.; Li, Ji

2003-01-01

The Barkol Tagh and Karlik Tagh ranges of the easternmost Tien Shan are a natural laboratory for studying the fault architecture of an active termination zone of a major intracontinental mountain range. Barkol and Karlik Tagh and lesser ranges to the north are bounded by active thrust faults that locally deform Quaternary sediments. Major thrusts in Karlik Tagh connect along strike to the east with the left-lateral Gobi-Tien Shan Fault System in SW Mongolia. From a Mongolian perspective. Karlik Tagh represents a large restraining bend for this regional strike-slip fault system, and the entire system of thrusts and strike-slip faults in the Karlik Tagh region defines a horsetail splay fault geometry. Regionally, there appears to be a kinematic transition from thrust-dominated deformation in the central Tien Shan to left-lateral transpressional deformation in the easternmost Tien Shan. This transition correlates with a general eastward decrease in mountain belt width and average elevation and a change in the angular relationship between the NNE-directed maximum horizontal stress in the region and the pre-existing basement structural grain, which is northwesterly in the central Tien Shan (orthogonal to SHmax) but more east-west in the eastern Tien Shan (acute angular relationship with SHmax . Ar-Ar ages indicate that major range-bounding thrusts in Barkol and Karlik Tagh are latest Permian-Triassic ductile thrust zones that underwent brittle reactivation in the Late Cenozoic. It is estimated that the modern mountain ranges of the extreme easternmost Tien Shan could have been constructed by only 10-15 km of Late Cenozoic horizontal shortening.

Geoelectric structure of the Gila-San Francisco Wilderness Area, Graham and Greenlee counties, Arizona from audio-magnetotelluric data

USGS Publications Warehouse

Klein, D.P.; Baer, M.J.

1983-01-01

Electromagnetic induction data using distant field sources, mostly of natural origin, in the frequency range of 4.5-27,000 Hz are analyzed to depict the geoelectric structure in an area of volcanic-rock cover located in southeastern Arizona between the Morenci and Safford porphyry copper deposits. The data for each station consist of scalar electromagnetic measurements at descrete frequencies for two-orthogonal magnetic and electric field pairs. Observations spaced about 5-km apart indicate resistivities in the range of 100-700 ohm-m for the unweathered Tertiary volcanic rocks to a depth of 200 to 500 m. Beneath this zone the data indicate resistivities in the range of 10-100 ohm-m that suggest the existence of an older volcanic rock unit. The less resistive unit appears to be displaced upward beneath Turtle Mountain, an area bounded to the northeast and southwest by mapped Basin and Range faults, and bounded to the southeast by an unmapped fault of older origin that trends northeast. Lateral changes in the resistivity of the two main geoelectric layers result in lowered resistivity in an area of known hot-springs near the confluence of the Gila and San Francisco Rivers, as well as along a north-south trending zone located on the east flank of Turtle Mountain, about 5-km (3-mi) west-northwest of the hot springs. This second anomaly is at a probable depth of 400-500 m and is interpreted to indicate a buried fault or fracture zone.

Constraints on Subduction Zone Coupling along the Philippine and Manila Trenches based on GPS and Seismological Data

NASA Astrophysics Data System (ADS)

Hamburger, M. W.; Johnson, K. M.; Nowicki, M. A. E.; Bacolcol, T. C.; Solidum, R., Jr.; Galgana, G.; Hsu, Y. J.; Yu, S. B.; Rau, R. J.; McCaffrey, R.

2014-12-01

We present results of two techniques to estimate the degree of coupling along the two major subduction zone boundaries that bound the Philippine Mobile Belt, the Philippine Trench and the Manila Trench. Convergence along these plate margins accommodates about 100 mm/yr of oblique plate motion between the Philippine Sea and Sundaland plates. The coupling estimates are based on a recently acquired set of geodetic data from a dense nationwide network of continuous and campaign GPS sites in the Philippines. First, we use a kinematic, elastic block model (tdefnode; McCaffrey, 2009) that combines existing fault geometries, GPS velocities and focal mechanism solutions to solve for block rotations, fault coupling, and intra-block deformation. Secondly, we use a plate-block kinematic model described in Johnson (2013) to simultaneously estimate long-term fault slip rates, block motions and interseismic coupling on block-bounding faults. The best-fit model represents the Philippine Mobile Belt by 14 independently moving rigid tectonic blocks, separated by active faults and subduction zones. The model predicts rapid convergence along the Manila Trench, decreasing progressively southwards, from > 100 mm/yr in the north to less than 20 mm/yr in the south at the Mindoro Island collision zone. Persistent areas of high coupling, interpreted to be asperities, are observed along the Manila Trench slab interface, in central Luzon (16-18°N) and near its southern and northern terminations. Along the Philippine Trench, we observe ~50 mm/yr of oblique convergence, with high coupling observed at its central and southern segments. We identify the range of allowable coupling distributions and corresponding moment accumulation rates on the two subduction zones by conducting a suite of inversions in which the total moment accumulation rate on a selected fault is fixed. In these constrained moment inversions we test the range of possible solutions that meet criteria for minimum, best-fit, and maximum coupling that still fit the data, based on reduced chi-squared calculations. In spite of the variable coupling, the total potential moment accumulation rate along each of the two subduction zones is estimated to range from 3.98 x 1019 to 2.24 x 1020 N-m yr-1, equivalent to a magnitude Mw 8.4 to 8.9 earthquake per 100 years.

The Habitable Zone Gallery 2.0: The Online Exoplanet System Visualization Suite

NASA Astrophysics Data System (ADS)

Chandler, C. O.; Kane, S. R.; Gelino, D. M.

2017-11-01

The Habitable Zone Gallery 2.0 provides new and improved visualization and data analysis tools to the exoplanet habitability community and beyond. Modules include interactive habitable zone plotting and downloadable 3D animations.

Relativistic many-body bound systems: electromagnetic properties. Monograph report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Danos, M.; Gillet, V.

1977-04-01

The formulae for the calculation of the electron scattering form factors, and of the static magnetic dipole and electric quadrupole moments, of relativistic many-body bound systems are derived. The framework, given in NBS Monograph 147, is relativistic quantum field theory in the Schrodinger picture; the physical particles, i.e., the solutions of the interacting fields, are given as linear combinations of the solutions of the free fields, called the parton fields. The parton--photon interaction is taken as given by minimal coupling. In addition, the contribution of the photon--vector meson vertex of the vector dominance model is derived.

Carbon dioxide-soluble polymers and swellable polymers for carbon dioxide applications

DOEpatents

DeSimone, Joseph M.; Birnbaum, Eva; Carbonell, Ruben G.; Crette, Stephanie; McClain, James B.; McCleskey, T. Mark; Powell, Kimberly R.; Romack, Timothy J.; Tumas, William

2004-06-08

A method for carrying out a catalysis reaction in carbon dioxide comprising contacting a fluid mixture with a catalyst bound to a polymer, the fluid mixture comprising at least one reactant and carbon dioxide, wherein the reactant interacts with the catalyst to form a reaction product. A composition of matter comprises carbon dioxide and a polymer and a reactant present in the carbon dioxide. The polymer has bound thereto a catalyst at a plurality of chains along the length of the polymer, and wherein the reactant interacts with the catalyst to form a reaction product.

Polygonal deformation bands in sandstone

NASA Astrophysics Data System (ADS)

Antonellini, Marco; Nella Mollema, Pauline

2017-04-01

We report for the first time the occurrence of polygonal faults in sandstone, which is compelling given that layer-bound polygonal fault systems have been observed so far only in fine-grained sediments such as clay and chalk. The polygonal faults are dm-wide zones of shear deformation bands that developed under shallow burial conditions in the lower portion of the Jurassic Entrada Fm (Utah, USA). The edges of the polygons are 1 to 5 meters long. The shear deformation bands are organized as conjugate faults along each edge of the polygon and form characteristic horst-like structures. The individual deformation bands have slip magnitudes ranging from a few mm to 1.5 cm; the cumulative average slip magnitude in a zone is up to 10 cm. The deformation bands heaves, in aggregate form, accommodate a small isotropic horizontal extension (strain < 0.005). The individual shear deformation bands show abutting T-junctions, veering, curving, and merging where they mechanically interact. Crosscutting relationships are rare. The interactions of the deformation bands are similar to those of mode I opening fractures. Density inversion, that takes place where under-compacted and over-pressurized layers (Carmel Fm) lay below normally compacted sediments (Entrada Sandstone), may be an important process for polygonal deformation bands formation. The gravitational sliding and soft sediment structures typically observed within the Carmel Fm support this hypothesis. Soft sediment deformation may induce polygonal faulting in the section of the Entrada Sandstone just above the Carmel Fm. The permeability of the polygonal deformation bands is approximately 10-14 to 10-13 m2, which is less than the permeability of the host, Entrada Sandstone (range 10-12 to 10-11 m2). The documented fault networks have important implications for evaluating the geometry of km-scale polygonal fault systems in the subsurface, top seal integrity, as well as constraining paleo-tectonic stress regimes.

Active zones of mammalian neuromuscular junctions: formation, density, and aging.

PubMed

Nishimune, Hiroshi

2012-12-01

Presynaptic active zones are synaptic vesicle release sites that play essential roles in the function and pathology of mammalian neuromuscular junctions (NMJs). The molecular mechanisms of active zone organization use presynaptic voltage-dependent calcium channels (VDCCs) in NMJs as scaffolding proteins. VDCCs interact extracellularly with the muscle-derived synapse organizer, laminin β2 and interact intracellularly with active zone-specific proteins, such as Bassoon, CAST/Erc2/ELKS2alpha, ELKS, Piccolo, and RIMs. These molecular mechanisms are supported by studies in P/Q- and N-type VDCCs double-knockout mice, and they are consistent with the pathological conditions of Lambert-Eaton myasthenic syndrome and Pierson syndrome, which are caused by autoantibodies against VDCCs or by a laminin β2 mutation. During normal postnatal maturation, NMJs maintain the density of active zones, while NMJs triple their size. However, active zones become impaired during aging. Propitiously, muscle exercise ameliorates the active zone impairment in aged NMJs, which suggests the potential for therapeutic strategies. © 2012 New York Academy of Sciences.

Accretion of the terrestrial planets. II

NASA Technical Reports Server (NTRS)

Weidenschilling, S. J.

1976-01-01

The theory of gravitational accretion of the terrestrial planets is examined. The concept of a 'closed feeding zone' is somewhat unrealistic, but provides a lower bound on the accretion time. A velocity relation for planetesimals which includes an initial velocity component is suggested. The orbital parameters of the planetesimals and the dimensions of the feeding zone are related to their relative velocities. The assumption of an initial velocity does not seriously change the accretion time. Mercury, Venus, and the earth have accretion times on the order of 100 million years. Mars requires well over one billion years to accrete by the same assumptions. The lunar cratering history makes a late formation of Mars unlikely. If Mars is as old as the earth, nongravitational forces or a violation of the feeding zone concept is required. One such possibility is the removal of matter from the zone of Mars by Jupiter's influence. The final sweeping up by Mars would result in the scattering of a considerable mass among the other terrestrial planets. The late postaccretional bombardments inferred for the moon and Mercury may have had this source.

Co-Binding of Pharmaceutical Compounds at Mineral Surfaces: Molecular Investigations of Dimer Formation at Goethite/Water Interfaces.

PubMed

Xu, Jing; Marsac, Rémi; Costa, Dominique; Cheng, Wei; Wu, Feng; Boily, Jean-François; Hanna, Khalil

2017-08-01

The emergence of antibiotic and anti-inflammatory agents in aquatic and terrestrial systems is becoming a serious threat to human and animal health worldwide. Because pharmaceutical compounds rarely exist individually in nature, interactions between various compounds can have unforeseen effects on their binding to mineral surfaces. This work demonstrates this important possibility for the case of two typical antibiotic and anti-inflammatory agents (nalidixic acid (NA) and niflumic acid (NFA)) bound at goethite (α-FeOOH) used as a model mineral surface. Our multidisciplinary study, which makes use of batch sorption experiments, vibration spectroscopy and periodic density functional theory calculations, reveals enhanced binding of the otherwise weakly bound NFA caused by unforeseen intermolecular interactions with mineral-bound NA. This enhancement is ascribed to the formation of a NFA-NA dimer whose energetically favored formation (-0.5 eV compared to free molecules) is predominantly driven by van der Waals interactions. A parallel set of efforts also showed that no cobinding occurred with sulfamethoxazole (SMX) because of the lack of molecular interactions with coexisting contaminants. As such, this article raises the importance of recognizing drug cobinding, and lack of cobinding, for predicting and developing policies on the fate of complex mixtures of antibiotics and anti-inflammatory agents in nature.

Cytomegalovirus Basic Phosphoprotein (pUL32) Binds to Capsids In Vitro through Its Amino One-Third

PubMed Central

Baxter, Michael K.; Gibson, Wade

2001-01-01

The cytomegalovirus (CMV) basic phosphoprotein (BPP) is a component of the tegument. It remains with the nucleocapsid fraction under conditions that remove most other tegument proteins from the virion, suggesting a direct and perhaps tight interaction with the capsid. As a step toward localizing this protein within the molecular structure of the virion and understanding its function during infection, we have investigated the BPP-capsid interaction. In this report we present evidence that the BPP interacts selectively, through its amino one-third, with CMV capsids. Radiolabeled simian CMV (SCMV) BPP, synthesized in vitro, bound to SCMV B-capsids, and C-capsids to a lesser extent, following incubation with either isolated capsids or lysates of infected cells. Human CMV (HCMV) BPP (pUL32) also bound to SCMV capsids, and SCMV BPP likewise bound to HCMV capsids, indicating that the sequence(s) involved is conserved between the two proteins. Analysis of SCMV BPP truncation mutants localized the capsid-binding region to the amino one-third of the molecule—the portion of BPP showing the greatest sequence conservation between the SCMV and HCMV homologs. This general approach may have utility in studying the interactions of other proteins with conformation-dependent binding sites. PMID:11435566

Metabolism, survival, and gene expression of Pseudomonas putida to hematite nanoparticles mediated by surface-bound humic acid

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ouyang, Kai; Walker, Sharon L.; Yu, Xiao-Ying

Natural organic matter (NOM) is likely to coat naturally occurring nanoparticles (NNPs) in the soil environment and poses distinct effects on the interaction between NPs and soil microorganisms, however such topic has not been well investigated. This study explored the influence of nanoparticle surface-bound humic acid (HA, as a model NOM) on the toxicity of hematite NPs (i.e., nano-Fe2O3) to Pseudomonas putida (P. putida). Results showed that nano-Fe2O3 could inhibit the bacterial growth with an IC50 of 23.58 mg L-1, while nanoparticle surface-bound HA could significantly alleviate the P. putida toxicity of nano-Fe2O3. IC50 of nano-Fe2O3 increased to 4774.23 mgmore » L-1 as a result of surface-saturation by HA. Co-precipitation experiment and transmission electron microscopy observation revealed that nanoparticle surface-bound HA prevented the adhesion of nano-Fe2O3 to the cells as well as limited cell internalization of nanoparticles due to the increased electrostatic repulsion. The generation of intracellular reactive oxygen species (ROS) was significantly limited by the nanoparticle surface-bound HA. The prevention of adhesion and inhibition of ROS generation could account for the HA-mitigated nanotoxicity. Interfacial interactions between hematite NPs and cell membrane were also evaluated on the basis of the Derjaguin–Landau–Verwey–Overbeek (DLVO) theory, and the magnitude of interaction energy barrier correlated well with the 48 h LC50 data of hematite NPs to P. putida. This result implies that metal oxide NPs with strong association with the cell surface might induce more severe cytotoxicity in microorganisms.« less

Efficient Computation of Anharmonic Force Constants via q-space, with Application to Graphene

NASA Astrophysics Data System (ADS)

Kornbluth, Mordechai; Marianetti, Chris

We present a new approach for extracting anharmonic force constants from a sparse sampling of the anharmonic dynamical tensor. We calculate the derivative of the energy with respect to q-space displacements (phonons) and strain, which guarantees the absence of supercell image errors. Central finite differences provide a well-converged quadratic error tail for each derivative, separating the contribution of each anharmonic order. These derivatives populate the anharmonic dynamical tensor in a sparse mesh that bounds the Brillouin Zone, which ensures comprehensive sampling of q-space while exploiting small-cell calculations for efficient, high-throughput computation. This produces a well-converged and precisely-defined dataset, suitable for big-data approaches. We transform this sparsely-sampled anharmonic dynamical tensor to real-space anharmonic force constants that obey full space-group symmetries by construction. Machine-learning techniques identify the range of real-space interactions. We show the entire process executed for graphene, up to and including the fifth-order anharmonic force constants. This method successfully calculates strain-based phonon renormalization in graphene, even under large strains, which solves a major shortcoming of previous potentials.

Effects of triplet Higgs bosons in long baseline neutrino experiments

NASA Astrophysics Data System (ADS)

Huitu, K.; Kärkkäinen, T. J.; Maalampi, J.; Vihonen, S.

2018-05-01

The triplet scalars (Δ =Δ++,Δ+,Δ0) utilized in the so-called type-II seesaw model to explain the lightness of neutrinos, would generate nonstandard interactions (NSI) for a neutrino propagating in matter. We investigate the prospects to probe these interactions in long baseline neutrino oscillation experiments. We analyze the upper bounds that the proposed DUNE experiment might set on the nonstandard parameters and numerically derive upper bounds, as a function of the lightest neutrino mass, on the ratio the mass MΔ of the triplet scalars, and the strength |λϕ| of the coupling ϕ ϕ Δ of the triplet Δ and conventional Higgs doublet ϕ . We also discuss the possible misinterpretation of these effects as effects arising from a nonunitarity of the neutrino mixing matrix and compare the results with the bounds that arise from the charged lepton flavor violating processes.

Astrophysics-independent bounds on the annual modulation of dark matter signals.

PubMed

Herrero-Garcia, Juan; Schwetz, Thomas; Zupan, Jure

2012-10-05

We show how constraints on the time integrated event rate from a given dark matter (DM) direct detection experiment can be used to bound the amplitude of the annual modulation signal in another experiment. The method requires only mild assumptions about the properties of the local DM distribution: that it is temporally stable on the scale of months and spatially homogeneous on the ecliptic. We apply the method to the annual modulation signal in DAMA/LIBRA, which we compare to the bounds derived from XENON10, XENON100, cryogenic DM search, and SIMPLE data. Assuming a DM mass of 10 GeV, we show that under the above assumptions about the DM halo, a DM interpretation of the DAMA/LIBRA signal is excluded for several classes of models: at 6.3σ (4.6σ) for elastic isospin conserving (violating) spin-independent interactions, and at 4.9σ for elastic spin-dependent interactions on protons.

Quantum tachyons

NASA Astrophysics Data System (ADS)

Tomaschitz, R.

2005-02-01

The interaction of superluminal radiation with matter in atomic bound-bound and bound-free transitions is investigated. We study transitions in the relativistic hydrogen atom effected by superluminal quanta. The superluminal radiation field is coupled by minimal substitution to the Dirac equation in a Coulomb potential. We quantize the interaction to obtain the transition matrix for induced and spontaneous superluminal radiation in hydrogen-like ions. The tachyonic photoelectric effect is scrutinized, the cross-sections for ground state ionization by transversal and longitudinal tachyons are derived. We examine the relativistic regime, high electronic ejection energies, as well as the first order correction to the non-relativistic cross-sections. In the ultra-relativistic limit, both the longitudinal and transversal cross-sections are peaked at small but noticeably different scattering angles. In the non-relativistic limit, the longitudinal cross-section has two maxima, and its minimum is located at the transversal maximum. Ionization cross-sections can thus be used to discriminate longitudinal radiation from transversal tachyons and photons.

Cosmological implications of Dark Matter bound states

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mitridate, Andrea; Redi, Michele; Smirnov, Juri

2017-05-01

We present generic formulæ for computing how Sommerfeld corrections together with bound-state formation affects the thermal abundance of Dark Matter with non-abelian gauge interactions. We consider DM as a fermion 3plet (wino) or 5plet under SU(2) {sub L} . In the latter case bound states raise to 11.5 TeV the DM mass required to reproduce the cosmological DM abundance and give indirect detection signals such as (for this mass) a dominant γ-line around 70 GeV. Furthermore, we consider DM co-annihilating with a colored particle, such as a squark or a gluino, finding that bound state effects are especially relevant inmore » the latter case.« less

Lithofacies Associations and Depositional Environments of the Neogene Molasse succession, Pishin Belt, northwestern Pakistan

NASA Astrophysics Data System (ADS)

Kasi, A.; Kassi, A.; Friis, H.; Umar, M.

2013-12-01

The Pishin Belt is a NE-SW trending mixed flysch and molasse basin, situated at the northwestern part of Pakistan, bordered by Afghan Block of the Eurasian Plate in the west and Indian Plate in the east. Western boundary of the belt is marked by the well-known Chaman Transform Fault, whereas the Zhob Valley Thrust and Muslim Bagh-Zhob Ophiolite mark the eastern boundary. The Belt is divisible into six tectono-stratigraphic zones bounded by major thrusts. Muslim Bagh-Zhob Ophiolite is the base and Zone-I of this belt. Zone-II comprises shallow marine and flysch successions of the Eocene Nisai Formation and Oligocene Khojak Formation. The Early to Middle Miocene Dasht Murgha group comprises Zone-III, the Late Miocene-Pliocene Malthanai formation comprises Zone-IV, the Pleistocene Bostan Formation makes Zone-V, and the flat-laying Holocene deposits of the Zhob Valley comprise Zone-VI. The Neogene molasse successions of the Pishin Belt include the Dasht Murgha group, Malthanai formation and Bostan Formation; these are mostly composed of sandstone, claystone and conglomerate lithologies. Sandstones have been classified as lithic arenites and their QFL values suggest quartzolithic composition. Twelve distinct lithofacies have been recognized in the succession and thus grouped into four types of facies associations. Lithofacies include clast-supported massive gravel (Gcm), clast-supported crudely bedded gravel (Gh), cross-stratified conglomerate (Gt and Gp), trough cross-stratified sandstone (St), planar cross-stratified sandstone (Sp), ripple cross-laminated sandstone (Sr), horizontally stratified sandstone (Sh), low-angle cross-stratified sandstone (Sl), massive sandstones (Sm), massive mudstone and siltstone (Fm) and paleosol carbonate (P). The lithofacies associations include channel facies association (CHA), crevasse-splay facies association (CSA), natural-levee facies association (LVA) and floodplain facies association (FPA). The lithofacies associations suggest that the Dasht Murgha group was deposited by a sandy braided to mixed-load high-sinuosity fluvial system, the Malthanai formation by a mixed-load high-sinuosity fluvial system and Bostan Formation by gravelly braided channels of a coalescing alluvial fan system. We propose that prolonged and continued collision of the Indian Plate with the Afghan Block of the Eurasian Plate resulted in the closure of the Katawaz Remnant Ocean (the southwestern extension of the Neo-Tethys) in the Early Miocene. Uplifted orogens of the Muslim Bagh-Zhob Ophiolite and marine successions of the Nisai and Khojak formations served as the major source terrains for the Miocene through Holocene molasse succession in the south and southeast verging successive thrust-bound foreland basins at the outer most extremity of the Pishin Belt.

Mantle to Surface Dynamics Across Subduction-Collision Transitions in Space and Time: Results from the CD-CAT Project in Anatolia

NASA Astrophysics Data System (ADS)

Whitney, D. L.; Abgarmi, B.; Beck, S. L.; Brocard, G. Y.; Cosca, M. A.; Darin, M. H.; Delph, J. R.; Hui, H.; Kahraman, M.; Kaymakci, N.; Kuscu, G.; Meijers, M. J.; Mulch, A.; Özacar, A.; Portner, D. E.; Reid, M. R.; Rey, P. F.; Rojay, B.; Schlieffarth, W. K.; Sandvol, E. A.; Schoenbohm, L. M.; Tank, B.; Teoman, U.; Teyssier, C. P.; Thomson, S. N.; Turkelli, N.; Umhoefer, P. J.; Uslular, G.; Willenbring, J. K.

2017-12-01

From west to east, the southern plate boundary of Anatolia varies from subduction to continental collision; plate dynamics are influenced by the interaction of back-arc extension in the west (Aegean) and convergence in the east (Arabia-Eurasia). Prior to 40 Ma, the entire margin was a subduction zone. The NSF project "Continental Dynamics-Central Anatolian Tectonics (CD-CAT)" has contributed to understanding how the mantle, crust, and surface evolve in subduction-to-collision transitions in time and space. Differences are seen in changes in deformation style as collision proceeded; e.g. from distributed across a broad zone to highly localized on a series of oblique-slip faults, and from transpression to transtension (W of the Central Anatolian fault zone, CAFZ) or strike-slip (E of the CAFZ); age, composition, and sources of magmatism, including a magmatic lull from 40-20 Ma, followed by expansion of magmatism SE-ward in central Anatolia; properties and architecture of the lithosphere and sub-lithospheric mantle (e.g. significant and locally abrupt crustal thickness variations, including thick crust under the Tauride Mts; thin to absent lithospheric mantle; and a torn and disaggregating slab that varies from shallow to steep below central Anatolia); and a topographic gradient from a high eastern plateau (> 2 km) to a central plateau (1-1.5 km) bounded to the N and S by mountain ranges that rose > 2 km from the sea between 11-5 Ma, producing a rain shadow in the Anatolian interior. Thermochronologic and structural studies of exhumed mid-crust and associated basins and fault zones as well as geophysical data for Anatolia today show the extent to which inherited features (suture zones, faults) have affected the tectonic evolution of Anatolia, particularly in the vicinity of the CAFZ/East Anatolian Fault, and mantle properties. Results also show that the Miocene was a dynamic time in the thermal and mechanical evolution of the region, as early Miocene rollback/foundering of the subducted slab drove major volcanism, faulting, and landscape changes (uplift). Slab dynamics below Anatolia accelerated the late Miocene-Pliocene transition from distributed to highly localized deformation, including inception of the North and East Anatolia strike-slip faults that today accommodate tectonic escape of Anatolia.

Contemporary continuum QCD approaches to excited hadrons

NASA Astrophysics Data System (ADS)

El-Bennich, Bruno; Rojas, Eduardo

2016-03-01

Amongst the bound states produced by the strong interaction, radially excited meson and nucleon states offer an important phenomenological window into the long-range behavior of the coupling constant in Quantum Chromodynamics. We here report on some technical details related to the computation of the bound state's eigenvalue spectrum in the framework of Bethe-Salpeter and Faddeev equations.

The Impact of Welfare State Regimes on Barriers to Participation in Adult Education: A Bounded Agency Model

ERIC Educational Resources Information Center

Rubenson, Kjell; Desjardins, Richard

2009-01-01

Quantitative and qualitative findings on barriers to participation in adult education are reviewed and some of the defining parameters that may explain observed national differences are considered. A theoretical perspective based on bounded agency is put forth to take account of the interaction between structurally and individually based barriers…

Structure Functions of Bound Neutrons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sebastian Kuhn

2005-04-01

We describe an experiment measuring electron scattering on a neutron bound in deuterium with coincident detection of a fast, backward-going spectator proton. Our data map out the relative importance of the pure PWIA spectator mechanism and final state interactions in various kinematic regions, and give a first glimpse of the modification of the structure function of a bound neutron as a function of its off-shell mass. We also discuss a new experimental program to study the structure of a free neutron by extending the same technique to much lower spectator momenta.

Bioavailability of sediment-bound contaminants to marine organisms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, B.; Neff, J.

1993-09-01

The bioavailability of sediment-bound contaminants to marine organisms indicates that there exists a potential for transfer of these contaminants through marine food webs to commercial fisheries products consumed by humans. However, there has been relatively little effort to combine and synthesize data on chemical/biological interactions between benthic animals and seagrasses and the sediments in which they reside on the one hand, and on the chemistry of bioaccumulation on the other. This report provides a conceptual basis for an approach to bioavailability and biomagnification of sediment-bound contaminants that reviews biological and chemical approaches.

Re-derived overclosure bound for the inert doublet model

NASA Astrophysics Data System (ADS)

Biondini, S.; Laine, M.

2017-08-01

We apply a formalism accounting for thermal effects (such as modified Sommerfeld effect; Salpeter correction; decohering scatterings; dissociation of bound states), to one of the simplest WIMP-like dark matter models, associated with an "inert" Higgs doublet. A broad temperature range T ˜ M/20 . . . M/104 is considered, stressing the importance and less-understood nature of late annihilation stages. Even though only weak interactions play a role, we find that resummed real and virtual corrections increase the tree-level overclosure bound by 1 . . . 18%, depending on quartic couplings and mass splittings.

Constraints on T-Odd, P-Even Interactions from Electric Dipole Moments

DOE Office of Scientific and Technical Information (OSTI.GOV)

A. Kurylov; G. C. McLaughlin; M.J. Ramsey-Musolf

2001-03-01

We construct the relationship between nonrenormalizable,effective, time-reversal violating (TV) parity-conserving (PC) interactions of quarks and gauge bosons and various low-energy TVPC and TV parity-violating (PV) observables. Using effective field theory methods, we delineate the scenarios under which experimental limits on permanent electric dipole moments (EDM's) of the electron, neutron, and neutral atoms as well as limits on TVPC observables provide the most stringent bounds on new TVPC interactions. Under scenarios in which parity invariance is restored at short distances, the one-loop EDM of elementary fermions generate the most severe constraints. The limits derived from the atomic EDM of {sup 199}Hgmore » are considerably weaker. When parity symmetry remains broken at short distances, direct TVPC search limits provide the least ambiguous bounds. The direct limits follow from TVPC interactions between two quarks.« less

Bridging a gap between continuum-QCD and ab initio predictions of hadron observables

DOE PAGES

Binosi, Daniele; Chang, Lei; Papavassiliou, Joannis; ...

2015-03-01

Within contemporary hadron physics there are two common methods for determining the momentum- dependence of the interaction between quarks: the top-down approach, which works toward an ab initiocomputation of the interaction via direct analysis of the gauge-sector gap equations; and the bottom-up scheme, which aims to infer the interaction by fitting data within a well-defined truncation of those equations in the matter sector that are relevant to bound-state properties. We unite these two approaches by demonstrating that the renormalisation-group-invariant running-interaction predicted by contemporary analyses of QCD’s gauge sector coincides with that required in order to describe ground-state hadron observables usingmore » a nonperturbative truncation of QCD’s Dyson–Schwinger equations in the matter sector. This bridges a gap that had lain between nonperturbative continuum-QCD and the ab initio prediction of bound-state properties.« less

Performance of the Cylindrical Drift Chamber and the Inner Plastic Scintillator in the BGOegg experiment

NASA Astrophysics Data System (ADS)

Shibukawa, Takuya; Masumoto, Shinichi; Ozawa, Kyoichiro; Ohnishi, Hiroaki; Muramatsu, Norihito; Ishikawa, Takatsugu; Miyabe, Manabu; Tsuchikawa, Yusuke; Yamazaki, Ryuji; Matsumura, Yuji; Mizutani, Keigo; Hashimoto, Toshikazu; Hamano, Hirotomo; LEPS2/BGOegg Collaboration

2014-09-01

Properties of vector mesons, such as ω mesons, in nucleus are intensively measured to study interactions between mesons and nuclear medium. To study ω meson properties in nuclei, we search for the nuclear ω bound states in the LEPS2/BGOegg experiment at SPring-8. If a strongly bounded ω state exists and binding energy is measured, it gives a phenomenological information about interactions between ω meson and nuclei. ω meson is produced using the GeV γ rays at SPring-8/LEPS2 beamline. The ω bound state is searched from the missing mass measurements of forward going protons. ω meson production is identified by detecting γ and proton from ωN --> N* --> γp or ωN --> γΔ --> γπ p reaction. In the BGOegg experiment, charged particles are detected by Cylindrical Drift Chamber(CDC) and Inner Plastic Scintillators (IPS) around the target. CDC has 4 layers of stereo wires and each layer has 72 sense wires. IPS consists of 30 plastic scintillators. In this talk, the performance of CDC and IPS are described in detail. Properties of vector mesons, such as ω mesons, in nucleus are intensively measured to study interactions between mesons and nuclear medium. To study ω meson properties in nuclei, we search for the nuclear ω bound states in the LEPS2/BGOegg experiment at SPring-8. If a strongly bounded ω state exists and binding energy is measured, it gives a phenomenological information about interactions between ω meson and nuclei. ω meson is produced using the GeV γ rays at SPring-8/LEPS2 beamline. The ω bound state is searched from the missing mass measurements of forward going protons. ω meson production is identified by detecting γ and proton from ωN --> N* --> γp or ωN --> γΔ --> γπ p reaction. In the BGOegg experiment, charged particles are detected by Cylindrical Drift Chamber(CDC) and Inner Plastic Scintillators (IPS) around the target. CDC has 4 layers of stereo wires and each layer has 72 sense wires. IPS consists of 30 plastic scintillators. In this talk, the performance of CDC and IPS are described in detail. All members of the collaboration are listed on http://www.lns.tohoku.ac.jp/ ~bgoegg/collaboration.html

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.

PubMed

De Kumar, Bony; Parker, Hugo J; Paulson, Ariel; Parrish, Mark E; Pushel, Irina; Singh, Narendra Pratap; Zhang, Ying; Slaughter, Brian D; Unruh, Jay R; Florens, Laurence; Zeitlinger, Julia; Krumlauf, Robb

2017-09-01

Hoxa1 has diverse functional roles in differentiation and development. We identify and characterize properties of regions bound by HOXA1 on a genome-wide basis in differentiating mouse ES cells. HOXA1-bound regions are enriched for clusters of consensus binding motifs for HOX, PBX, and MEIS, and many display co-occupancy of PBX and MEIS. PBX and MEIS are members of the TALE family and genome-wide analysis of multiple TALE members (PBX, MEIS, TGIF, PREP1, and PREP2) shows that nearly all HOXA1 targets display occupancy of one or more TALE members. The combinatorial binding patterns of TALE proteins define distinct classes of HOXA1 targets, which may create functional diversity. Transgenic reporter assays in zebrafish confirm enhancer activities for many HOXA1-bound regions and the importance of HOX-PBX and TGIF motifs for their regulation. Proteomic analyses show that HOXA1 physically interacts on chromatin with PBX, MEIS, and PREP family members, but not with TGIF, suggesting that TGIF may have an independent input into HOXA1-bound regions. Therefore, TALE proteins appear to represent a wide repertoire of HOX cofactors, which may coregulate enhancers through distinct mechanisms. We also discover extensive auto- and cross-regulatory interactions among the Hoxa1 and TALE genes, indicating that the specificity of HOXA1 during development may be regulated though a complex cross-regulatory network of HOXA1 and TALE proteins. This study provides new insight into a regulatory network involving combinatorial interactions between HOXA1 and TALE proteins. © 2017 De Kumar et al.; Published by Cold Spring Harbor Laboratory Press.

GTP Binding and Oncogenic Mutations May Attenuate Hypervariable Region (HVR)-Catalytic Domain Interactions in Small GTPase K-Ras4B, Exposing the Effector Binding Site*

PubMed Central

Lu, Shaoyong; Banerjee, Avik; Jang, Hyunbum; Zhang, Jian; Gaponenko, Vadim; Nussinov, Ruth

2015-01-01

K-Ras4B, a frequently mutated oncogene in cancer, plays an essential role in cell growth, differentiation, and survival. Its C-terminal membrane-associated hypervariable region (HVR) is required for full biological activity. In the active GTP-bound state, the HVR interacts with acidic plasma membrane (PM) headgroups, whereas the farnesyl anchors in the membrane; in the inactive GDP-bound state, the HVR may interact with both the PM and the catalytic domain at the effector binding region, obstructing signaling and nucleotide exchange. Here, using molecular dynamics simulations and NMR, we aim to figure out the effects of nucleotides (GTP and GDP) and frequent (G12C, G12D, G12V, G13D, and Q61H) and infrequent (E37K and R164Q) oncogenic mutations on full-length K-Ras4B. The mutations are away from or directly at the HVR switch I/effector binding site. Our results suggest that full-length wild-type GDP-bound K-Ras4B (K-Ras4BWT-GDP) is in an intrinsically autoinhibited state via tight HVR-catalytic domain interactions. The looser association in K-Ras4BWT-GTP may release the HVR. Some of the oncogenic mutations weaken the HVR-catalytic domain association in the K-Ras4B-GDP/-GTP bound states, which may facilitate the HVR disassociation in a nucleotide-independent manner, thereby up-regulating oncogenic Ras signaling. Thus, our results suggest that mutations can exert their effects in more than one way, abolishing GTP hydrolysis and facilitating effector binding. PMID:26453300

Hydropedology: Synergistic integration of soil science and hydrology in the Critical Zone

USGS Publications Warehouse

Lin, H.S.; McDonnell, J.J.; Nimmo, John R.; Pachepsky, Y. A.

2016-01-01

Soil and water are the two critical components of theEarth’s Critical Zone (Figure 1): Soil modulates the connection between bedrock and the atmospheric boundary layer and water is a major driving force and transport agent between these two zones. The interactions between soil and water are so intimate and complex that they cannot be effectively studied in a piecemeal manner; they require a systems approach. In this spirit, hydropedology has emerged in recent years as a synergistic integration of soil science and hydrology that offers a renewed perspective and an integrated approach to understanding interactive pedologic and hydrologic processes and their properties in the Critical Zone.

Multi-asperity models of slow slip and tremor

NASA Astrophysics Data System (ADS)

Ampuero, Jean Paul; Luo, Yingdi; Lengline, Olivier; Inbal, Asaf

2016-04-01

Field observations of exhumed faults indicate that fault zones can comprise mixtures of materials with different dominant deformation mechanisms, including contrasts in strength, frictional stability and hydrothermal transport properties. Computational modeling helps quantify the potential effects of fault zone heterogeneity on fault slip styles from seismic to aseismic slip, including slow slip and tremor phenomena, foreshocks sequences and swarms, high- and low-frequency radiation during large earthquakes. We will summarize results of ongoing modeling studies of slow slip and tremor in which fault zone structure comprises a collection of frictionally unstable patches capable of seismic slip (tremorgenic asperities) embedded in a frictionally stable matrix hosting aseismic transient slips. Such models are consistent with the current view that tremors result from repeated shear failure of multiple asperities as Low Frequency Earthquakes (LFEs). The collective behavior of asperities embedded in creeping faults generate a rich spectrum of tremor migration patterns, as observed in natural faults, whose seismicity rate, recurrence time and migration speed can be mechanically related to the underlying transient slow slip rate. Tremor activity and slow slip also responds to periodic loadings induced by tides or surface waves, and models relate tremor tidal sensitivity to frictional properties, fluid pressure and creep rate. The overall behavior of a heterogeneous fault is affected by structural parameters, such as the ratio of stable to unstable materials, but also by time-dependent variables, such as pore pressure and loading rate. Some behaviors are well predicted by homogenization theory based on spatially-averaged frictional properties, but others are somewhat unexpected, such as seismic slip behavior found in asperities that are much smaller than their nucleation size. Two end-member regimes are obtained in rate-and-state models with velocity-weakening asperities embedded in a matrix with either (A) velocity-strengthening friction or (B) a transition from velocity-weakening to velocity-strengthening at increasing slip velocity. The most conventional regime is tremor driven by slow slip. However, if the interaction between asperities mediated by intervening transient creep is strong enough, a regime of slow slip driven by tremors emerges. These two regimes lead to different statistics of inter-event times of LFE sequences, which we confront to observations from LFE catalogs in Mexico, Cascadia and Parkfield. These models also suggest that the depth dependence of tremor and slow slip behavior, for instance their shorter recurrence time and weaker amplitude with increasing depth, are not necessarily related to depth dependent size distribution of asperities, but could be due to depth-dependence of the properties of the intervening creep materials. Simplified fracture mechanics models illustrate how the resistance of the fault zone matrix can control the effective distance of interaction between asperities, and lead to transitions between Gutenberg-Richter to size-bounded (exponential) frequency-magnitude distributions. Structural fault zone properties such as the thickness of the damage zone can also introduce characteristic length scales that may affect the size distribution of tremors. Earthquake cycle simulations on heterogeneous faults also provide insight into the conditions that allow asperities to generate foreshock activity and high-frequency radiation during large earthquakes.

Formation mechanism of guided resonances and bound states in the continuum in photonic crystal slabs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, Xingwei; Hsu, Chia Wei; Zhen, Bo

2016-08-25

We develop a formalism, based on the mode expansion method, to describe the guided resonances and bound states in the continuum (BICs) in photonic crystal slabs with one-dimensional periodicity. This approach provides analytic insights to the formation mechanisms of these states: the guided resonances arise from the transverse Fabry–Pérot condition, and the divergence of the resonance lifetimes at the BICs is explained by a destructive interference of radiation from different propagating components inside the slab. As a result, we show BICs at the center and on the edge of the Brillouin zone protected by symmetry, BICs at generic wave vectorsmore » not protected by symmetry, and the annihilation of BICs at low-symmetry wave vectors.« less

Alder Establishment and Channel Dynamics in a Tributary of the South Fork Eel River, Mendocino County, California

Treesearch

William J. Trush; Edward C. Connor; Knight Alan W.

1989-01-01

Riparian communities established along Elder Creek, a tributary of the upper South Fork Eel River, are bounded by two frequencies of periodic flooding. The upper limit for the riparian zone occurs at bankfull stage. The lower riparian limit is associated with a more frequent stage height, called the active channel, having an exceedance probability of 11 percent on a...

14 CFR 99.43 - Contiguous U.S. ADIZ.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 14 Aeronautics and Space 2 2010-01-01 2010-01-01 false Contiguous U.S. ADIZ. 99.43 Section 99.43 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) AIR TRAFFIC... Zones § 99.43 Contiguous U.S. ADIZ. The area bounded by a line from 43°15′N, 65°55′W; 44°21′N; 67°16′W...

Dry Juan de Fuca slab revealed by quantification of water entering Cascadia subduction zone

NASA Astrophysics Data System (ADS)

Canales, J. P.; Carbotte, S. M.; Nedimović, M. R.; Carton, H.

2017-11-01

Water is carried by subducting slabs as a pore fluid and in structurally bound minerals, yet no comprehensive quantification of water content and how it is stored and distributed at depth within incoming plates exists for any segment of the global subduction system. Here we use seismic data to quantify the amount of pore and structurally bound water in the Juan de Fuca plate entering the Cascadia subduction zone. Specifically, we analyse these water reservoirs in the sediments, crust and lithospheric mantle, and their variations along the central Cascadia margin. We find that the Juan de Fuca lower crust and mantle are drier than at any other subducting plate, with most of the water stored in the sediments and upper crust. Variable but limited bend faulting along the margin limits slab access to water, and a warm thermal structure resulting from a thick sediment cover and young plate age prevents significant serpentinization of the mantle. The dryness of the lower crust and mantle indicates that fluids that facilitate episodic tremor and slip must be sourced from the subducted upper crust, and that decompression rather than hydrous melting must dominate arc magmatism in central Cascadia. Additionally, dry subducted lower crust and mantle can explain the low levels of intermediate-depth seismicity in the Juan de Fuca slab.

Defining an Abrasion Index for Lunar Surface Systems as a Function of Dust Interaction Modes and Variable Concentration Zones

NASA Technical Reports Server (NTRS)

Kobrick, Ryan L.; Klaus, David M.; Street, Kenneth W., Jr.

2010-01-01

Unexpected issues were encountered during the Apollo era of lunar exploration due to detrimental abrasion of materials upon exposure to the fine-grained, irregular shaped dust on the surface of the Moon. For critical design features involving contact with the lunar surface and for astronaut safety concerns, operational concepts and dust tolerance must be considered in the early phases of mission planning. To systematically define material selection criteria, dust interaction can be characterized by two-body or three-body abrasion testing, and subcategorically by physical interactions of compression, rolling, sliding and bending representing specific applications within the system. Two-body abrasion occurs when a single particle or asperity slides across a given surface removing or displacing material. Three-body abrasion occurs when multiple particles interact with a solid surface, or in between two surfaces, allowing the abrasives to freely rotate and interact with the material(s), leading to removal or displacement of mass. Different modes of interaction are described in this paper along with corresponding types of tests that can be utilized to evaluate each configuration. In addition to differential modes of abrasion, variable concentrations of dust in different zones can also be considered for a given system design and operational protocol. These zones include: (1) outside the habitat where extensive dust exposure occurs, (2) in a transitional zone such as an airlock or suitport, and (3) inside the habitat or spacesuit with a low particle count. These zones can be used to help define dust interaction frequencies, and corresponding risks to the systems and/or crew can be addressed by appropriate mitigation strategies. An abrasion index is introduced that includes the level of risk, R, the hardness of the mineralogy, H, the severity of the abrasion mode, S, and the frequency of particle interactions, F.

Lipoprotein lipase (LPL) strongly links native and oxidized low density lipoprotein particles to decorin-coated collagen. Roles for both dimeric and monomeric forms of LPL.

PubMed

Pentikäinen, M O; Oörni, K; Kovanen, P T

2000-02-25

Low density lipoprotein (LDL) and oxidized LDL are associated with collagen in the arterial intima, where the collagen is coated by the small proteoglycan decorin. When incubated in physiological ionic conditions, decorin-coated collagen bound only small amounts of native and oxidized LDL, the interaction being weak. When decorin-coated collagen was first allowed to bind lipoprotein lipase (LPL), binding of native and oxidized LDL increased dramatically (23- and 7-fold, respectively). This increase depended on strong interactions between LPL that was bound to the glycosaminoglycan chains of the collagen-bound decorin and native and oxidized LDL (kDa 12 and 5.9 nM, respectively). To distinguish between binding to monomeric (inactive) and dimeric (catalytically active) forms of LPL, affinity chromatography on heparin columns was conducted, which showed that native LDL bound to the monomeric LPL, whereas oxidized LDL, irrespective of the type of modification (Cu(2+), 2, 2'-azobis(2-amidinopropane)hydrochloride, hypochlorite, or soybean 15-lipoxygenase), bound preferably to dimeric LPL. However, catalytic activity of LPL was not required for binding to oxidized LDL. Finally, immunohistochemistry of atherosclerotic lesions of human coronary arteries revealed specific areas in which LDL, LPL, decorin, and collagen type I were present. The results suggest that LPL can retain LDL in atherosclerotic lesions along decorin-coated collagen fibers.

Self-similar gravity wave spectra resulting from the modulation of bound waves

NASA Astrophysics Data System (ADS)

Michel, Guillaume; Semin, Benoît; Cazaubiel, Annette; Haudin, Florence; Humbert, Thomas; Lepot, Simon; Bonnefoy, Félicien; Berhanu, Michaël; Falcon, Éric

2018-05-01

We experimentally study the properties of nonlinear surface gravity waves in a large-scale basin. We consider two different configurations: a one-dimensional (1D) monochromatic wave forcing, and a two-dimensional (2D) forcing with bichromatic waves satisfying resonant-wave interaction conditions. For the 1D forcing, we find a discrete wave-energy spectrum dominated at high frequencies by bound waves whose amplitudes decrease as a power law of the frequency. Bound waves (e.g., to the carrier) are harmonics superimposed on the carrier wave propagating with the same phase velocity as the one of the carrier. When a narrow frequency random modulation is applied to this carrier, the high-frequency part of the wave-energy spectrum becomes continuous with the same frequency-power law. Similar results are found for the 2D forcing when a random modulation is also applied to both carrier waves. Our results thus show that all these nonlinear gravity wave spectra are dominated at high frequencies by the presence of bound waves, even in the configuration where resonant interactions occur. Moreover, in all these configurations, the power-law exponent of the spectrum is found to depend on the forcing amplitude with the same trend as the one found in previous gravity wave turbulence experiments. Such a set of bound waves may thus explain this dependence that was previously poorly understood.

Interaction of the P-Glycoprotein Multidrug Transporter with Sterols.

PubMed

Clay, Adam T; Lu, Peihua; Sharom, Frances J

2015-11-03

The ABC transporter P-glycoprotein (Pgp, ABCB1) actively exports structurally diverse substrates from within the lipid bilayer, leading to multidrug resistance. Many aspects of Pgp function are altered by the phospholipid environment, but its interactions with sterols remain enigmatic. In this work, the functional interaction between purified Pgp and various sterols was investigated in detergent solution and proteoliposomes. Fluorescence studies showed that dehydroergosterol, cholestatrienol, and NBD-cholesterol interact intimately with Pgp, resulting in both quenching of protein Trp fluorescence and enhancement of sterol fluorescence. Kd values indicated binding affinities in the range of 3-9 μM. Collisional quenching experiments showed that Pgp-bound NBD-cholesterol was protected from the external milieu, resonance energy transfer was observed between Pgp Trp residues and the sterol, and the fluorescence emission of bound sterol was enhanced. These observations suggested an intimate interaction of bound sterols with the transporter at a protected nonpolar site. Cholesterol hemisuccinate altered the thermal unfolding of Pgp and greatly stabilized its basal ATPase activity in both a detergent solution and reconstituted proteoliposomes of certain phospholipids. Other sterols, including dehydroergosterol, did not stabilize the basal ATPase activity of detergent-solubilized Pgp, which suggests that this is not a generalized sterol effect. The phospholipid composition and cholesterol hemisuccinate content of Pgp proteoliposomes altered the basal ATPase and drug transport cycles differently. Sterols may interact with Pgp and modulate its structure and function by occupying part of the drug-binding pocket or by binding to putative consensus cholesterol-binding (CRAC/CARC) motifs located within the transmembrane domains.

Probes for dark matter physics

NASA Astrophysics Data System (ADS)

Khlopov, Maxim Yu.

The existence of cosmological dark matter is in the bedrock of the modern cosmology. The dark matter is assumed to be nonbaryonic and consists of new stable particles. Weakly Interacting Massive Particle (WIMP) miracle appeals to search for neutral stable weakly interacting particles in underground experiments by their nuclear recoil and at colliders by missing energy and momentum, which they carry out. However, the lack of WIMP effects in their direct underground searches and at colliders can appeal to other forms of dark matter candidates. These candidates may be weakly interacting slim particles, superweakly interacting particles, or composite dark matter, in which new particles are bound. Their existence should lead to cosmological effects that can find probes in the astrophysical data. However, if composite dark matter contains stable electrically charged leptons and quarks bound by ordinary Coulomb interaction in elusive dark atoms, these charged constituents of dark atoms can be the subject of direct experimental test at the colliders. The models, predicting stable particles with charge ‑ 2 without stable particles with charges + 1 and ‑ 1 can avoid severe constraints on anomalous isotopes of light elements and provide solution for the puzzles of dark matter searches. In such models, the excessive ‑ 2 charged particles are bound with primordial helium in O-helium atoms, maintaining specific nuclear-interacting form of the dark matter. The successful development of composite dark matter scenarios appeals for experimental search for doubly charged constituents of dark atoms, making experimental search for exotic stable double charged particles experimentum crucis for dark atoms of composite dark matter.

Dicamptodon tenebrosus larvae within hyporheic zones of intermittent streams in California

Treesearch

David Feral; Michael A. Camann; Hartwell H. Welsh Jr.

2005-01-01

Lotic ecosystems are increasingly viewed as having three interactive spatial compartments, i.e., channel sediments, the hyporheic zone, and flood plains or riparian areas (Cummins et al. 1983; Ward 1989). The hyporheic zone is the sub-benthic habitat of interstitial spaces between substrate particles in the stream bed, and is the transition zone between surface flow...

DNA probes for monitoring dynamic and transient molecular encounters on live cell membranes

NASA Astrophysics Data System (ADS)

You, Mingxu; Lyu, Yifan; Han, Da; Qiu, Liping; Liu, Qiaoling; Chen, Tao; Sam Wu, Cuichen; Peng, Lu; Zhang, Liqin; Bao, Gang; Tan, Weihong

2017-05-01

Cells interact with the extracellular environment through molecules expressed on the membrane. Disruption of these membrane-bound interactions (or encounters) can result in disease progression. Advances in super-resolution microscopy have allowed membrane encounters to be examined, however, these methods cannot image entire membranes and cannot provide information on the dynamic interactions between membrane-bound molecules. Here, we show a novel DNA probe that can transduce transient membrane encounter events into readable cumulative fluorescence signals. The probe, which translocates from one anchor site to another, mimicking motor proteins, is realized through a toehold-mediated DNA strand displacement reaction. Using this probe, we successfully monitored rapid encounter events of membrane lipid domains using flow cytometry and fluorescence microscopy. Our results show a preference for encounters within the same lipid domains.

Mechanical Insight into Resistance of Betaine to Urea-Induced Protein Denaturation.

PubMed

Chen, Jiantao; Gong, Xiangjun; Zeng, Chaoxi; Wang, Yonghua; Zhang, Guangzhao

2016-12-08

It is known that urea can induce protein denaturation that can be inhibited by osmolytes. Yet, experimental explorations on this mechanism at the molecular level are still lacking. We have investigated the resistance of betaine to the urea-induced denaturation of lysozyme in aqueous solutions using low-field NMR. Our study demonstrates that urea molecules directly interact with lysozyme, leading to denaturation. However, betaine molecules interacting with urea more strongly than lysozyme can pull the bound urea molecules from lysozyme so that the protein is protected from denaturation. The number of urea molecules bound to a betaine molecule is given under different conditions. Proton NMR spectroscopy ( 1 H-NMR) and Fourier transform infrared spectroscopy reveal that the interaction between betaine and urea is through hydrogen bonding.

Interaction measurement of particles bound to a lipid membrane

NASA Astrophysics Data System (ADS)

Sarfati, Raphael; Dufresne, Eric

2015-03-01

The local shape and dynamics of the plasma membrane play important roles in many cellular processes. Local membrane deformations are often mediated by the adsorption of proteins (notably from the BAR family), and their subsequent self-assembly. The emerging hypothesis is that self-assembly arises from long-range interactions of individual proteins through the membrane's deformation field. We study these interactions in a model system of micron-sized colloidal particles adsorbed onto a lipid bilayer. We use fluorescent microscopy, optical tweezers and particle tracking to measure dissipative and conservative forces as a function of the separation between the particles. We find that particles are driven together with forces of order 100 fN and remain bound in a potential well with a stiffness of order 100 fN/micron.

Microscopic observation of magnon bound states and their dynamics.

PubMed

Fukuhara, Takeshi; Schauß, Peter; Endres, Manuel; Hild, Sebastian; Cheneau, Marc; Bloch, Immanuel; Gross, Christian

2013-10-03

The existence of bound states of elementary spin waves (magnons) in one-dimensional quantum magnets was predicted almost 80 years ago. Identifying signatures of magnon bound states has so far remained the subject of intense theoretical research, and their detection has proved challenging for experiments. Ultracold atoms offer an ideal setting in which to find such bound states by tracking the spin dynamics with single-spin and single-site resolution following a local excitation. Here we use in situ correlation measurements to observe two-magnon bound states directly in a one-dimensional Heisenberg spin chain comprising ultracold bosonic atoms in an optical lattice. We observe the quantum dynamics of free and bound magnon states through time-resolved measurements of two spin impurities. The increased effective mass of the compound magnon state results in slower spin dynamics as compared to single-magnon excitations. We also determine the decay time of bound magnons, which is probably limited by scattering on thermal fluctuations in the system. Our results provide a new way of studying fundamental properties of quantum magnets and, more generally, properties of interacting impurities in quantum many-body systems.

Two related trypanosomatid eIF4G homologues have functional differences compatible with distinct roles during translation initiation

PubMed Central

Moura, Danielle MN; Reis, Christian RS; Xavier, Camila C; da Costa Lima, Tamara D; Lima, Rodrigo P; Carrington, Mark; de Melo Neto, Osvaldo P

2015-01-01

In higher eukaryotes, eIF4A, eIF4E and eIF4G homologues interact to enable mRNA recruitment to the ribosome. eIF4G acts as a scaffold for these interactions and also interacts with other proteins of the translational machinery. Trypanosomatid protozoa have multiple homologues of eIF4E and eIF4G and the precise function of each remains unclear. Here, 2 previously described eIF4G homologues, EIF4G3 and EIF4G4, were further investigated. In vitro, both homologues bound EIF4AI, but with different interaction properties. Binding to distinct eIF4Es was also confirmed; EIF4G3 bound EIF4E4 while EIF4G4 bound EIF4E3, both these interactions required similar binding motifs. EIF4G3, but not EIF4G4, interacted with PABP1, a poly-A binding protein homolog. Work in vivo with Trypanosoma brucei showed that both EIF4G3 and EIF4G4 are cytoplasmic and essential for viability. Depletion of EIF4G3 caused a rapid reduction in total translation while EIF4G4 depletion led to changes in morphology but no substantial inhibition of translation. Site-directed mutagenesis was used to disrupt interactions of the eIF4Gs with either eIF4E or eIF4A, causing different levels of growth inhibition. Overall the results show that only EIF4G3, with its cap binding partner EIF4E4, plays a major role in translational initiation. PMID:25826663

Ocean-ice interaction in the marginal ice zone

NASA Technical Reports Server (NTRS)

Liu, Antony K.; Peng, Chich Y.

1994-01-01

Ocean ice interaction processes in the Marginal Ice Zone (MIZ) by wind, waves, and mesoscale features, such as upwelling and eddies, are studied using ERS-1 Synthetic Aperture Radar (SAR) images and ocean ice interaction model. A sequence of SAR images of the Chukchi Sea MIZ with three days interval are studied for ice edge advance/retreat. Simultaneous current measurements from the northeast Chukchi Sea as well as the Barrow wind record are used to interpret the MIZ dynamics.

Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions.

PubMed

Turner, Leslie M; Harr, Bettina

2014-12-09

Mapping hybrid defects in contact zones between incipient species can identify genomic regions contributing to reproductive isolation and reveal genetic mechanisms of speciation. The house mouse features a rare combination of sophisticated genetic tools and natural hybrid zones between subspecies. Male hybrids often show reduced fertility, a common reproductive barrier between incipient species. Laboratory crosses have identified sterility loci, but each encompasses hundreds of genes. We map genetic determinants of testis weight and testis gene expression using offspring of mice captured in a hybrid zone between M. musculus musculus and M. m. domesticus. Many generations of admixture enables high-resolution mapping of loci contributing to these sterility-related phenotypes. We identify complex interactions among sterility loci, suggesting multiple, non-independent genetic incompatibilities contribute to barriers to gene flow in the hybrid zone.

DNA interactions with a Methylene Blue redox indicator depend on the DNA length and are sequence specific.

PubMed

Farjami, Elaheh; Clima, Lilia; Gothelf, Kurt V; Ferapontova, Elena E

2010-06-01

A DNA molecular beacon approach was used for the analysis of interactions between DNA and Methylene Blue (MB) as a redox indicator of a hybridization event. DNA hairpin structures of different length and guanine (G) content were immobilized onto gold electrodes in their folded states through the alkanethiol linker at the 5'-end. Binding of MB to the folded hairpin DNA was electrochemically studied and compared with binding to the duplex structure formed by hybridization of the hairpin DNA to a complementary DNA strand. Variation of the electrochemical signal from the DNA-MB complex was shown to depend primarily on the DNA length and sequence used: the G-C base pairs were the preferential sites of MB binding in the duplex. For short 20 nts long DNA sequences, the increased electrochemical response from MB bound to the duplex structure was consistent with the increased amount of bound and electrochemically readable MB molecules (i.e. MB molecules that are available for the electron transfer (ET) reaction with the electrode). With longer DNA sequences, the balance between the amounts of the electrochemically readable MB molecules bound to the hairpin DNA and to the hybrid was opposite: a part of the MB molecules bound to the long-sequence DNA duplex seem to be electrochemically mute due to long ET distance. The increasing electrochemical response from MB bound to the short-length DNA hybrid contrasts with the decreasing signal from MB bound to the long-length DNA hybrid and allows an "off"-"on" genosensor development.

Prescribed performance distributed consensus control for nonlinear multi-agent systems with unknown dead-zone input

NASA Astrophysics Data System (ADS)

Cui, Guozeng; Xu, Shengyuan; Ma, Qian; Li, Yongmin; Zhang, Zhengqiang

2018-05-01

In this paper, the problem of prescribed performance distributed output consensus for higher-order non-affine nonlinear multi-agent systems with unknown dead-zone input is investigated. Fuzzy logical systems are utilised to identify the unknown nonlinearities. By introducing prescribed performance, the transient and steady performance of synchronisation errors are guaranteed. Based on Lyapunov stability theory and the dynamic surface control technique, a new distributed consensus algorithm for non-affine nonlinear multi-agent systems is proposed, which ensures cooperatively uniformly ultimately boundedness of all signals in the closed-loop systems and enables the output of each follower to synchronise with the leader within predefined bounded error. Finally, simulation examples are provided to demonstrate the effectiveness of the proposed control scheme.

Catalytic combustion of residual fuels

NASA Technical Reports Server (NTRS)

Bulzan, D. L.; Tacina, R. R.

1981-01-01

A noble metal catalytic reactor was tested using two grades of petroleum derived residual fuels at specified inlet air temperatures, pressures, and reference velocities. Combustion efficiencies greater than 99.5 percent were obtained. Steady state operation of the catalytic reactor required inlet air temperatures of at least 800 K. At lower inlet air temperatures, upstream burning in the premixing zone occurred which was probably caused by fuel deposition and accumulation on the premixing zone walls. Increasing the inlet air temperature prevented this occurrence. Both residual fuels contained about 0.5 percent nitrogen by weight. NO sub x emissions ranged from 50 to 110 ppm by volume at 15 percent excess O2. Conversion of fuel-bound nitrogen to NO sub x ranged from 25 to 50 percent.

Seismic reflection imaging of two megathrust shear zones in the northern Cascadia subduction zone.

PubMed

Calvert, Andrew J

2004-03-11

At convergent continental margins, the relative motion between the subducting oceanic plate and the overriding continent is usually accommodated by movement along a single, thin interface known as a megathrust. Great thrust earthquakes occur on the shallow part of this interface where the two plates are locked together. Earthquakes of lower magnitude occur within the underlying oceanic plate, and have been linked to geochemical dehydration reactions caused by the plate's descent. Here I present deep seismic reflection data from the northern Cascadia subduction zone that show that the inter-plate boundary is up to 16 km thick and comprises two megathrust shear zones that bound a >5-km-thick, approximately 110-km-wide region of imbricated crustal rocks. Earthquakes within the subducting plate occur predominantly in two geographic bands where the dip of the plate is inferred to increase as it is forced around the edges of the imbricated inter-plate boundary zone. This implies that seismicity in the subducting slab is controlled primarily by deformation in the upper part of the plate. Slip on the shallower megathrust shear zone, which may occur by aseismic slow slip, will transport crustal rocks into the upper mantle above the subducting oceanic plate and may, in part, provide an explanation for the unusually low seismic wave speeds that are observed there.

Noble gases recycled into the mantle through cold subduction zones

NASA Astrophysics Data System (ADS)

Smye, Andrew J.; Jackson, Colin R. M.; Konrad-Schmolke, Matthias; Hesse, Marc A.; Parman, Steve W.; Shuster, David L.; Ballentine, Chris J.

2017-08-01

Subduction of hydrous and carbonated oceanic lithosphere replenishes the mantle volatile inventory. Substantial uncertainties exist on the magnitudes of the recycled volatile fluxes and it is unclear whether Earth surface reservoirs are undergoing net-loss or net-gain of H2O and CO2. Here, we use noble gases as tracers for deep volatile cycling. Specifically, we construct and apply a kinetic model to estimate the effect of subduction zone metamorphism on the elemental composition of noble gases in amphibole - a common constituent of altered oceanic crust. We show that progressive dehydration of the slab leads to the extraction of noble gases, linking noble gas recycling to H2O. Noble gases are strongly fractionated within hot subduction zones, whereas minimal fractionation occurs along colder subduction geotherms. In the context of our modelling, this implies that the mantle heavy noble gas inventory is dominated by the injection of noble gases through cold subduction zones. For cold subduction zones, we estimate a present-day bulk recycling efficiency, past the depth of amphibole breakdown, of 5-35% and 60-80% for 36Ar and H2O bound within oceanic crust, respectively. Given that hotter subduction dominates over geologic history, this result highlights the importance of cooler subduction zones in regassing the mantle and in affecting the modern volatile budget of Earth's interior.

Role of surface and subsurface processes in scaling N2O emissions along riverine networks

PubMed Central

Marzadri, Alessandra; Dee, Martha M.; Tonina, Daniele; Bellin, Alberto; Tank, Jennifer L.

2017-01-01

Riverine environments, such as streams and rivers, have been reported as sources of the potent greenhouse gas nitrous oxide (N2O) to the atmosphere mainly via microbially mediated denitrification. Our limited understanding of the relative roles of the near-surface streambed sediment (hyporheic zone), benthic, and water column zones in controlling N2O production precludes predictions of N2O emissions along riverine networks. Here, we analyze N2O emissions from streams and rivers worldwide of different sizes, morphology, land cover, biomes, and climatic conditions. We show that the primary source of N2O emissions varies with stream and river size and shifts from the hyporheic–benthic zone in headwater streams to the benthic–water column zone in rivers. This analysis reveals that N2O production is bounded between two N2O emission potentials: the upper N2O emission potential results from production within the benthic–hyporheic zone, and the lower N2O emission potential reflects the production within the benthic–water column zone. By understanding the scaling nature of N2O production along riverine networks, our framework facilitates predictions of riverine N2O emissions globally using widely accessible chemical and hydromorphological datasets and thus, quantifies the effect of human activity and natural processes on N2O production. PMID:28400514

Budgeted Interactive Learning

DTIC Science & Technology

2017-06-15

the methodology of reducing the online-algorithm-selecting problem as a contextual bandit problem, which is yet another interactive learning...KH2016a] Kuan-Hao Huang and Hsuan-Tien Lin. Linear upper confidence bound algorithm for contextual bandit problem with piled rewards. In Proceedings

Upper Bound on Diffusivity

NASA Astrophysics Data System (ADS)

Hartman, Thomas; Hartnoll, Sean A.; Mahajan, Raghu

2017-10-01

The linear growth of operators in local quantum systems leads to an effective light cone even if the system is nonrelativistic. We show that the consistency of diffusive transport with this light cone places an upper bound on the diffusivity: D ≲v2τeq. The operator growth velocity v defines the light cone, and τeq is the local equilibration time scale, beyond which the dynamics of conserved densities is diffusive. We verify that the bound is obeyed in various weakly and strongly interacting theories. In holographic models, this bound establishes a relation between the hydrodynamic and leading nonhydrodynamic quasinormal modes of planar black holes. Our bound relates transport data—including the electrical resistivity and the shear viscosity—to the local equilibration time, even in the absence of a quasiparticle description. In this way, the bound sheds light on the observed T -linear resistivity of many unconventional metals, the shear viscosity of the quark-gluon plasma, and the spin transport of unitary fermions.

Mechanistic Origin of the Ultrastrong Adhesion between Graphene and a-SiO2: Beyond van der Waals.

PubMed

Kumar, Sandeep; Parks, David; Kamrin, Ken

2016-07-26

The origin of the ultrastrong adhesion between graphene and a-SiO2 has remained a mystery. This adhesion is believed to be predominantly van der Waals (vdW) in nature. By rigorously analyzing recently reported blistering and nanoindentation experiments, we show that the ultrastrong adhesion between graphene and a-SiO2 cannot be attributed to vdW forces alone. Our analyses show that the fracture toughness of the graphene/a-SiO2 interface, when the interfacial adhesion is modeled with vdW forces alone, is anomalously weak compared to the measured values. The anomaly is related to an ultrasmall fracture process zone (FPZ): owing to the lack of a third dimension in graphene, the FPZ for the graphene/a-SiO2 interface is extremely small, and the combination of predominantly tensile vdW forces, distributed over such a small area, is bound to result in a correspondingly small interfacial fracture toughness. Through multiscale modeling, combining the results of finite element analysis and molecular dynamics simulations, we show that the adhesion between graphene and a-SiO2 involves two different kinds of interactions: one, a weak, long-range interaction arising from vdW adhesion and, second, discrete, short-range interactions originating from graphene clinging to the undercoordinated Si (≡Si·) and the nonbridging O (≡Si-O·) defects on a-SiO2. A strong resistance to relative opening and sliding provided by the latter mechanism is identified as the operative mechanism responsible for the ultrastrong adhesion between graphene and a-SiO2.

The participation of ribosomes in protein glycosylation. Interaction of the ribosome-UDP-N-acetyl-glucosamine complex with dolichol phosphate.

PubMed

Paszkiewicz-Gadek, A; Porowska, H; Gałasiński, W

1992-01-01

UDP-N-acetylglucosamine can be bound by pure ribosomes. The part of N-acetylglucosamine-1-P can be transferred from the complex ribosome-UDP-N-acetylglucosamine onto dolichol phosphate. Evidence is presented that N-acetylglucosamine bound to dolichol phosphate can be transferred to the nascent peptide synthesized on the ribosome.

Imbalance in Groundwater-Surface Water Interactions and its Relationship to the Coastal Zone Hazards

NASA Astrophysics Data System (ADS)

Kontar, Y. A.; Ozorovich, Y. R.; Salokhiddinov, A. T.

2011-12-01

We report here some efforts and results in studying the imbalance in groundwater-surface water interactions and processes of groundwater-surface water interactions and groundwater flooding creating hazards in the coastal zones. Hazards, hydrological and geophysical risk analysis related to imbalance in groundwater-surface water interactions and groundwater flooding have been to a large extent under-emphasized for coastal zone applications either due to economical limitations or underestimation of significance of imbalance in groundwater-surface water interactions. This is particularly true for tsunamis creating salt water intrusion to coastal aquifers, even though most tsunami hazard assessments have in the past relied on scenario or deterministic type models, and to increasing mineralization of potable water because of intensive water diversions and also the abundance of highly toxic pollutants (mainly pesticides) in water, air and food, which contribute to the deterioration of the coastal population's health. In the wake of pressing environmental and economic issues, it is of prime importance for the scientific community to shed light onto the great efforts by hydrologists and geophysicists to quantify conceptual uncertainties and to provide quality assurances of potential coastal zone hazard evaluation and prediction under conditions of imbalance in groundwater-surface water interactions. This paper proposes consideration of two case studies which are important and significant for future understanding of a concept of imbalance in groundwater-surface water interactions and development and essential for feasibility studies of hazards in the coastal zone. The territory of the Aral Sea Region in Central Asia is known as an ecological disaster coastal zone. It is now obvious that, in order to provide reasonable living conditions to the coastal zone population, it is first of all necessary to drastically improve the quality of the water dedicated to human needs. Due to their intensive pollution by industrial wastes and by drainage waters from irrigated fields, the Syr Darya and Amu Darya rivers can no longer be considered as a source of safe and sustainable water supply. In such a situation, a number of scientists consider that the population's water supply must be achieved through a more comprehensive use of fresh and even subsaline groundwater resources from the coastal aquifers. The 2004 tsunami in the Indian Ocean caused imbalance in groundwater-surface water interactions and a disaster affecting thousands of kilometers of coastal zone in SE Asia. Many coastal wetlands were affected in the short term by the large inflow of salt seawater and littoral sediment deposited during the tsunami, and in the longer-term by changes in their hydrogeology caused by changes to coastlines and damage to sea-defenses. Many water quality and associated problems were generated by the tsunami. The tsunami has created imbalance in groundwater-surface water interactions and an accelerating process of salt-water intrusion and fresh-water contaminations in affected regions that now require drastic remediation measures.

Group Dynamics in the Language Classroom: Embodied Participation as Active Reception in the Collective Zone of Proximal Development

ERIC Educational Resources Information Center

van Compernolle, Rémi A.; Williams, Lawrence

2013-01-01

This article explores the notion of "active reception" during small-group collaborative interaction in the foreign language classroom, focusing on the embodied participation of a secondary (nonspeaking) interactant, Diane. Drawing on Vygotskian sociocultural theory, we argue that within small-group work, a Zone of Proximal Development…

A Web-Free Prototype for Distance Learning.

ERIC Educational Resources Information Center

Molinari, Andrea; Colazzo, Luigi

This paper presents a prototype for the construction of interactive educational hypermedia that can be used on the Internet without being bound to typical World Wide Web protocols and tools. Its most innovative aspect is interactivity: it allows teachers and learners to remotely interact in real time in both a synchronous and asynchronous manner.…

Multi-soliton interaction of a generalized Schrödinger-Boussinesq system in a magnetized plasma

NASA Astrophysics Data System (ADS)

Zhao, Xue-Hui; Tian, Bo; Chai, Jun; Wu, Xiao-Yu; Guo, Yong-Jiang

2017-04-01

Under investigation in this paper is a generalized Schrödinger-Boussinesq system, which describes the stationary propagation of coupled upper-hybrid waves and magnetoacoustic waves in a magnetized plasma. Bilinear forms, one-, two- and three-soliton solutions are derived by virtue of the Hirota method and symbolic computation. Propagation and interaction for the solitons are illustrated graphically: Coefficients β1^{} and β2^{} can affect the velocities and propagation directions of the solitary waves. Amplitude, velocity and shape of the one solitary wave keep invariant during the propagation, implying that the transport of the energy is stable in the upper-hybrid and magnetoacoustic waves, and amplitude of the upper-hybrid wave is bigger than that of the magnetoacoustic wave. For the upper-hybrid and magnetoacoustic waves, head-on, overtaking and bound-state interaction between the two solitary waves are asymptotically depicted, respectively, indicating that the interaction between the two solitary waves is elastic. Elastic interaction between the bound-state soliton and a single one soliton is also displayed, and interaction among the three solitary waves is all elastic.

Omega-Omega interaction on the Lattice

NASA Astrophysics Data System (ADS)

Yamada, Masanori; Halqcd Collaboration

2014-09-01

We report our results of central potential between two Omega baryons from 2+1 flavor full Lattice QCD simulation. In the past studies, there is a possibility that some decouplet baryons have a bound state. However, almost all decuplet baryons are unstable due to decays via the strong interaction. An exception is the Omega decuplte baryon, which is stable against the strong decays, so its interaction is suitable to be investigated. It is, however, still difficult to investigate the Omega-Omega interaction experimentally due to its short-life time via weak decays. Therefore, the lattice QCD study for the Omega-Omega interaction is necessary and important. We present results obtained by the extension of the HAL QCD method to the system of two decuplet baryons. Our numerical results are obtained from 2+1 flavor full QCD gauge configurations at L ~ 2 . 9 fm mπ ~ 701 MeV and mΩ ~ 1966 MeV, generated by the PACS-CS Collaboration. We find that the Omega-Omega interaction is strong attractive, but it's not strong enough to make a bound state at out simulation set up.

Robustness Elasticity in Complex Networks

PubMed Central

Matisziw, Timothy C.; Grubesic, Tony H.; Guo, Junyu

2012-01-01

Network robustness refers to a network’s resilience to stress or damage. Given that most networks are inherently dynamic, with changing topology, loads, and operational states, their robustness is also likely subject to change. However, in most analyses of network structure, it is assumed that interaction among nodes has no effect on robustness. To investigate the hypothesis that network robustness is not sensitive or elastic to the level of interaction (or flow) among network nodes, this paper explores the impacts of network disruption, namely arc deletion, over a temporal sequence of observed nodal interactions for a large Internet backbone system. In particular, a mathematical programming approach is used to identify exact bounds on robustness to arc deletion for each epoch of nodal interaction. Elasticity of the identified bounds relative to the magnitude of arc deletion is assessed. Results indicate that system robustness can be highly elastic to spatial and temporal variations in nodal interactions within complex systems. Further, the presence of this elasticity provides evidence that a failure to account for nodal interaction can confound characterizations of complex networked systems. PMID:22808060

Role of pre-existing structures in controlling the Cenozoic tectonic evolution of the eastern Tibetan plateau: New insights from analogue experiments

NASA Astrophysics Data System (ADS)

Sun, Ming; Yin, An; Yan, Danping; Ren, Hongyu; Mu, Hongxu; Zhu, Lutao; Qiu, Liang

2018-06-01

Pre-existing weakness due to repeated tectonic, metamorphic, and magmatic events is a fundamental feature of the continental lithosphere on Earth. Because of this, continental deformation results from a combined effect of boundary conditions imposed by plate tectonic processes and heterogeneous and anisotropic mechanical strength inherited from protracted continental evolution. In this study, we assess how this interaction may have controlled the Cenozoic evolution of the eastern Tibetan plateau during the India-Asia collision. Specifically, we use analogue models to evaluate how the pre-Cenozoic structures may have controlled the location, orientation, and kinematics of the northwest-striking Xianshuihe and northeast-striking Longmen Shan fault zones, the two most dominant Cenozoic structures in eastern Tibet. Our best model indicates that the correct location, trend, and kinematics of the two fault systems can only be generated and maintained if the following conditions are met: (1) the northern part of the Songpan-Ganzi terrane in eastern Tibet has a strong basement whereas its southern part has a weak basement, (2) the northern strong basement consists of two pieces bounded by a crustal-scale weak zone that is expressed by the Triassic development of a northwest-trending antiform exposing middle and lower crustal rocks, and (3) the region was under persistent northeast-southwest compression since ∼35 Ma. Our model makes correct prediction on the sequence of deformation in eastern Tibet; the Longmen Shan right-slip transpressional zone was initiated first as an instantaneous response to the northeast-southwest compression, which is followed by the formation of the Xianshuihe fault about a half way after the exertion of northeast-southwest shortening in the model. The success of our model highlights the importance of pre-existing weakness, a key factor that has been largely neglected in the current geodynamic models of continental deformation.

Depth of the vadose zone controls aquifer biogeochemical conditions and extent of anthropogenic nitrogen removal

USGS Publications Warehouse

Szymczycha, Beata; Kroeger, Kevin D.; Crusius, John; Bratton, John F.

2017-01-01

We investigated biogeochemical conditions and watershed features controlling the extent of nitrate removal through microbial dinitrogen (N2) production within the surficial glacial aquifer located on the north and south shores of Long Island, NY, USA. The extent of N2 production differs within portions of the aquifer, with greatest N2 production observed at the south shore of Long Island where the vadose zone is thinnest, while limited N2production occurred under the thick vadose zones on the north shore. In areas with a shallow water table and thin vadose zone, low oxygen concentrations and sufficient DOC concentrations are conducive to N2production. Results support the hypothesis that in aquifers without a significant supply of sediment-bound reducing potential, vadose zone thickness exerts an important control of the extent of N2 production. Since quantification of excess N2 relies on knowledge of equilibrium N2concentration at recharge, calculated based on temperature at recharge, we further identify several features, such as land use and cover, seasonality of recharge, and climate change that should be considered to refine estimation of recharge temperature, its deviation from mean annual air temperature, and resulting deviation from expected equilibrium gas concentrations.

Processes and Parameters Controlling the Extent of Methanogenic Conditions in the Unsaturated Zone of a Crude Oil Spill Site

NASA Astrophysics Data System (ADS)

Molins, S.; Mayer, K.

2007-12-01

Gas concentrations measured in the vadose zone at a crude oil spill site near Bemidji, MN, show that a large area near the oil body is currently dominated by methanogenic conditions. Away from the oil body methane concentrations decrease as it is degraded by methanotrophic bacteria under aerobic conditions. Numerical simulations have been conducted to quantify the contributions of the relevant transport and reaction processes to the production and attenuation of methane in the vadose zone. Methane is generated in the vadose zone by anaerobic degradation of oil and is also added by fluxes from the capillary fringe and the saturated zone. Gas diffusion and advection contribute to the transport of methane in the lateral direction and towards the ground surface. Attenuation of methane concentrations occurs through aerobic oxidation in the presence of methanotrophic bacteria. Critical parameters were varied within bounds provided by field data and previous studies. Simulation results confirm that the layered sediment structure present at the site plays a significant role in explaining the observed distribution of gases in the vadose zone. The presence of a low permeability lens in the area upgradient from the source results in higher moisture contents, limiting diffusion of oxygen into the zone of methane production, and contributes to the spread of methane. Diffusion was identified as the most significant transport mechanism for gases in the vadose zone. However, field-observed zones of depleted and enriched N2 and Ar concentrations could only be explained by the development of advective fluxes induced by reactive processes (methanogenesis and methanotrophy). The zones of gas production are characterized by slightly increased total gas pressures and low concentrations of N2 and Ar, while zones of gas consumption show slightly depressed total gas pressures and high concentrations of N2 and Ar. The simulations suggest that the advective flux that develops between these zones contributes up to 15% of the total methane flux.

Role of the Western Anatolia Shear Zone (WASZ) in Neotectonics Evolution of the Western Anatolia Extended Terrain, Turkey

NASA Astrophysics Data System (ADS)

Cemen, I.; Gogus, O. H.; Hancer, M.

2013-12-01

The Neotectonics period in western Anatolia Extended Terrain, Turkey (WAET) may have initiated in late Oligocene following the Eocene Alpine collision which produced the Izmir-Ankara suture zone. The Western Anatolia Shear Zone (WASZ) bounds the WAET to the east. The shear zone contains mostly normal faults in the vicinity of the Gulf of Gokova. However, its movement is mostly oblique slip from the vicinity of Tavas towards the Lake of Acigol where it makes a northward bend and possibly joins the Eskisehir fault zone to the north of the town of Afyon. The shear zone forms the southern and eastern margins of the Kale-Tavas, Denizli and Acigol basins. The shear zone is similar in its structural/tectonics setting to the Eastern California Shear zone (ECSZ) of the Basins and Ranges of North America Extended terrain which is also composed of many normal to oblique-slip faults and separates two extended terrains with different rates of extension. Western Anatolia experienced many devastating earthquakes within the last 2000 years. Many of the ancient Greek/Roman city states, including Ephesus, Troy, and Hierapolis were destroyed by large historical earthquakes. During the second half of the 20th century, the region experienced two major large earthquake giving normal fault focal mechanism solutions. They are the 1969, M=6.9 Alasehir and the 1970, M=7.1 Gediz earthquakes. These earthquakes had caused substantial damage and loss of life in the region. Therefore, a comprehensive understanding of the kinematics of the Cenozoic extensional tectonics and earthquake potential of the WASZ in the region, is very important, especially since the fault zone is very close to the major towns in eastern part of western Turkey, such as Mugla, Denizli, Sandikli, Dinar and Afyon.

Development of gravity theory application in the internalregional inter-zone commodity movement distribution with the origin zone movement generation boundary

NASA Astrophysics Data System (ADS)

Akbardin, J.; Parikesit, D.; Riyanto, B.; TMulyono, A.

2018-05-01

Zones that produce land fishery commodity and its yields have characteristics that is limited in distribution capability because infrastructure conditions availability. High demand for fishery commodities caused to a growing distribution at inefficient distribution distance. The development of the gravity theory with the limitation of movement generation from the production zone can increase the interaction inter-zones by distribution distances effectively and efficiently with shorter movement distribution distances. Regression analysis method with multiple variable of transportation infrastructure condition based on service level and quantitative capacity is determined to estimate the 'mass' of movement generation that is formed. The resulting movement distribution (Tid) model has the equation Tid = 27.04 -0.49 tid. Based on barrier function of power model with calibration value β = 0.0496. In the way of development of the movement generation 'mass' boundary at production zone will shorten the distribution distance effectively with shorter distribution distances. Shorter distribution distances will increase the accessibility inter-zones to interact according to the magnitude of the movement generation 'mass'.

Radar Remote Sensing of Ice and Sea State and Air-Sea Interaction in the Marginal Ice Zone

DTIC Science & Technology

2014-09-30

1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Radar Remote Sensing of Ice and Sea State and Air-Sea...Interaction in the Marginal Ice Zone Hans C. Graber RSMAS – Department of Ocean Sciences Center for Southeastern Tropical Advanced Remote Sensing...scattering and attenuation process of ocean waves interacting with ice . A nautical X-band radar on a vessel dedicated to science would be used to follow the

K-Ar constraints on fluid-rock interaction and dissolution-precipitation events within the actively creeping shear zones from SAFOD cores

NASA Astrophysics Data System (ADS)

Ali, S.; Hemming, S. R.; Torgersen, T.; Fleisher, M. Q.; Cox, S. E.; Stute, M.

2009-12-01

The San Andreas Fault Observatory at Depth (SAFOD) was drilled to study the physical and chemical processes responsible for faulting and earthquake generation along an active, plate-bounding fault at depth. SAFOD drill cores show multiple zones of alteration and deformation due to fluid-rock interaction in the fault rocks(Schleicher et al. 2008). In context of fluid studies in the SAFZ, noble gas and potassium measurements were performed on solid samples of sedimentary rocks obtained from drill cores across the fault (3050-4000m-MD). We used a combination of 40Ar/39Ar and K-Ar methods on crushed samples of mudrock with variable amounts of visible slickensides to constrain the degree of resetting of the K-Ar system across the San Andreas Fault zone. 40Ar/39Ar was analyzed from small fragments (sand sized grains) while K-Ar was measured in crushed bulk rock samples (100-250 mg for Ar, and 5-10 mg for K analyses). The apparent 40Ar/39Ar ages based on single step laser fusion of small fragments corresponding to the detrital component in the coarse fraction, show varying ages ranging from the provenance age to <13Ma. Although more data are needed to make detailed comparisons, the apparent K-Ar ages of bulk samples in the fault zone are biased toward authigenic materials contained in the fine fraction, similar to the 40Ar/39Ar ages reported for mineralogical separates from very fine size fractions of samples obtained from 3065.98m-MD and 3294.89m-MD (Schleicher et al., submitted to Geology). The small samples measured for 40Ar/39Ar show scatter in the apparent ages, generally bracketing the bulk ages. However they are picked from sieved portions of the samples, and it is likely that there may be a loss of the younger (finer) material. Detrital provenance ages appear to be 50-60Ma in the Pacific Plate, and 100Ma in the North American Plate. 40Ar/39Ar ages within the SAFZ, as defined by geophysical logs (3200-3400m MD), are dominated by apparent detrital ages of ˜100Ma. More work is needed to test whether this is a real provenance age, or if there could be some systematic process that could lead to age bias towards older values. We observe nearly complete resetting of K-Ar ages, indicating that the K content is dominated by newly formed authigenic minerals as a result of fluid rock interaction in the SAFZ. Because the authigenic minerals are subject to successive dissolution-precipitation events over a range of time (3 to 0 Ma) and because the detrital component may not be fully reset, the K-Ar apparent ages (<300,000 years) in the SAFZ provide a maximum age on the resetting event. Similar trends of relatively young ages across the SAFZ compared to the surrounding country rock in the Pacific and North American Plates are also observed in the apparent fluid ‘ages’, corresponding to the fluid event responsible for the fluid-rock interaction in the fault (Ali et al. this session).

What is the earthquake fracture energy?

NASA Astrophysics Data System (ADS)

Di Toro, G.; Nielsen, S. B.; Passelegue, F. X.; Spagnuolo, E.; Bistacchi, A.; Fondriest, M.; Murphy, S.; Aretusini, S.; Demurtas, M.

2016-12-01

The energy budget of an earthquake is one of the main open questions in earthquake physics. During seismic rupture propagation, the elastic strain energy stored in the rock volume that bounds the fault is converted into (1) gravitational work (relative movement of the wall rocks bounding the fault), (2) in- and off-fault damage of the fault zone rocks (due to rupture propagation and frictional sliding), (3) frictional heating and, of course, (4) seismic radiated energy. The difficulty in the budget determination arises from the measurement of some parameters (e.g., the temperature increase in the slipping zone which constraints the frictional heat), from the not well constrained size of the energy sinks (e.g., how large is the rock volume involved in off-fault damage?) and from the continuous exchange of energy from different sinks (for instance, fragmentation and grain size reduction may result from both the passage of the rupture front and frictional heating). Field geology studies, microstructural investigations, experiments and modelling may yield some hints. Here we discuss (1) the discrepancies arising from the comparison of the fracture energy measured in experiments reproducing seismic slip with the one estimated from seismic inversion for natural earthquakes and (2) the off-fault damage induced by the diffusion of frictional heat during simulated seismic slip in the laboratory. Our analysis suggests, for instance, that the so called earthquake fracture energy (1) is mainly frictional heat for small slips and (2), with increasing slip, is controlled by the geometrical complexity and other plastic processes occurring in the damage zone. As a consequence, because faults are rapidly and efficiently lubricated upon fast slip initiation, the dominant dissipation mechanism in large earthquakes may not be friction but be the off-fault damage due to fault segmentation and stress concentrations in a growing region around the fracture tip.

Burst of reactive oxygen species in pedicel-mediated fruit abscission after carbohydrate supply was cut off in longan (Dimocarpus longan)

PubMed Central

Yang, Ziqin; Zhong, Xiumei; Fan, Yan; Wang, Huicong; Li, Jianguo; Huang, Xuming

2015-01-01

Cutting off carbohydrate supply to longan (Dimocarpus longan Lour.) fruit by girdling and defoliation or by detachment induced 100% abscission within a few days. We used these treatments to study the involvement of reactive oxygen species (ROS) in fruit abscission. Girdling plus defoliation decreased sugar concentrations in the fruit and pedicel and depleted starch grains in the chloroplasts in the cells of abscission zone. Prior to the occurrence of intensive fruit abscission, there was a burst in ROS in the pedicel, which peaked at 1 day after treatment (DAT), when H2O2 in the abscission zone was found to be chiefly located along the plasma membrane (PM). H2O2 was found exclusively in the cell walls 2 DAT, almost disappeared 3 DAT, and reappeared in the mitochondria and cell walls 4 DAT. Signs of cell death such as cytoplasm breakdown were apparent from 3 DAT. The burst of ROS coincided with a sharp increase in the activity of PM-bound NADPH oxidase in the pedicel. At the same time, activities of antioxidant enzymes including superoxide dismutase (SOD), catalase, and peroxidase (POD) were all increased by the treatment and maintained higher than those in the control. Accompanying the reduction in H2O2 abundance, there was a sharp decrease in PM-bound NADPH oxidase activity after 1 DAT in the treated fruit. H2O2 scavenger dimethylthiourea (DMTU, 1 g L–1) significantly inhibited fruit abscission in detached fruit clusters and suppressed the increase in cellulase activity in the abscission zone. These results suggest that fruit abscission induced by carbohydrate stress is mediated by ROS. Roles of ROS in regulating fruit abscission were discussed in relation to its subcellular distribution. PMID:26074931

San Antonio relay ramp: Area of stratal continuity between large-displacement barrier faults of the Edwards aquifer and Balcones fault zone, central Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Collins, E.W.

1996-09-01

The San Antonio relay ramp, a gentle southwest-dipping monocline, formed between the tips of two en echelon master faults having maximum throws of >240 in. Structural analysis of this relay ramp is important to studies of Edwards aquifer recharge and ground-water flow because the ramp is an area of relatively good stratal continuity linking the outcrop belt recharge zone and unconfined aquifer with the downdip confined aquifer. Part of the relay ramp lies within the aquifer recharge zone and is crossed by several southeast-draining creeks, including Salado, Cibolo, and Comal Creeks, that supply water to the ramp recharge area. Thismore » feature is an analog for similar structures within the aquifer and for potential targets for hydrocarbons in other Gulf Coast areas. Defining the ramp is an {approximately}13-km-wide right step of the Edwards Group outcrop belt and the en echelon master faults that bound the ramp. The master faults strike N55-75{degrees}E, and maximum displacement exceeds the {approximately}165-m thickness of the Edwards Group strata. The faults therefore probably serve as barriers to Edwards ground-water flow. Within the ramp, tilted strata gently dip southwestward at {approximately}5 m/km, and the total structural relief along the ramp`s southwest-trending axis is <240 in. The ramp`s internal framework is defined by three fault blocks that are {approximately}4 to {approximately}6 km wide and are bound by northeast-striking faults having maximum throws between 30 and 150 m. Within the fault blocks, local areas of high fracture permeability may exist where smaller faults and joints are well connected.« less

Geophysical basin structure of the Cotonou (Dahomey/Benin) basin, West African Gulf of Guinea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Babalola, O.O.

1990-05-01

The frontier Cotonou basin (or Dahomey/Benin embayment), situated west of the prolific Niger Delta basin, appears from seismic, gravity, and aeromagnetic interpretation, as a series of grabens and troughs confined on the west and east by the Romanche and the Chain fracture zones, respectively. The Keta trough of the western basin rim was formed by a 2700-m southeasterly downthrow of the Adina fault. This trough is separated by a north-northeasterly fault from the Lome-Anecho gravity high. Eastward, the arcuate Allada-Adjohon trough is abutted on its southern flank by the northwest-trending Nokue-Afowo trough and separated from the northwesterly Ikorodu trough bymore » the 50-km-wide aeromagnetically inferred ro-Otta ridge. The Ikorodu trough is adjoined on the northwest by the Aiyetoro trough and on the southeast by the Yemoja offshore graben trending east northeast as the Seme oil-field structural trend. North of the regional northeasterly axial, gravity positive, structural divide (the continental precursor of the Charcot fracture zone) a series of half-grabens (notably the Aplahoue, Bohicon, and Keiou troughs), normal faulted eastward and downthrown in the west, dominate the landward western rim of the Cotonou basin. Graben-bounding faults control the upper valleys of the basin drainage, converge toward the regional intrabasin structural trend and continue into the Fenyi-koe fault and the Charcot fracture zone. These faults resulted from brittle dextral shear of continental crust oblique to local, preexisting north-northeast structural trends. In the eastern basin rim, preexisting north-northwest structural trends influenced the shearing stress regime to generate small, shallow, structurally bounded, east-northeast- and north-northwest trending grabens.« less

Relativistic bound states in three space-time dimensions in Minkowski space

NASA Astrophysics Data System (ADS)

Gutierrez, C.; Gigante, V.; Frederico, T.; Tomio, Lauro

2016-01-01

With the aim to derive a workable framework for bound states in Minkowski space, we have investigated the Nakanishi perturbative integral representation of the Bethe-Salpeter (BS) amplitude in two-dimensions (2D) in space and time (2+1). The homogeneous BS amplitude, projected onto the light-front plane, is used to derive an equation for the Nakanishi weight function. The formal development is illustrated in detail and applied to the bound system composed by two scalar particles interacting through the exchange of a massive scalar. The explicit forms of the integral equations are obtained in ladder approximation.

Pairing from strong repulsion in triangular lattice Hubbard model

NASA Astrophysics Data System (ADS)

Zhang, Shang-Shun; Zhu, Wei; Batista, Cristian D.

2018-04-01

We propose a pairing mechanism between holes in the dilute limit of doped frustrated Mott insulators. Hole pairing arises from a hole-hole-magnon three-body bound state. This pairing mechanism has its roots on single-hole kinetic energy frustration, which favors antiferromagnetic (AFM) correlations around the hole. We demonstrate that the AFM polaron (hole-magnon bound state) produced by a single hole propagating on a field-induced polarized background is strong enough to bind a second hole. The effective interaction between these three-body bound states is repulsive, implying that this pairing mechanism is relevant for superconductivity.

Rivers of the Andes and the Amazon Basin: Deciphering global change from the hydroclimatic variability in the critical zone

NASA Astrophysics Data System (ADS)

Moreira-Turcq, Patricia; Carlo Espinoza, Jhan; Filizola, Naziano; Martinez, Jean-Michel

2018-01-01

The Critical Zone has been defined as the thin layer of the continental surfaces extending from fresh bedrock and the bottom of groundwater up to vegetation canopy, where soil, rock, water, air, and living organisms interact (Banwart et al., 2012; Lin et al., 2011). Despite the Critical Zone's importance to terrestrial life, it remains poorly understood. In this context, understanding the complex interactions between physical, chemical, and biological processes of the Critical Zone requires long-term observations (Anderson et al., 2012; Brantley et al., 2017), not only because different mechanisms have varying time frames, but also because it is necessary to monitor its natural and anthropogenic evolution in response to global climate and environmental changes.

Theoretical and computational studies of excitons in conjugated polymers

NASA Astrophysics Data System (ADS)

Barford, William; Bursill, Robert J.; Smith, Richard W.

2002-09-01

We present a theoretical and computational analysis of excitons in conjugated polymers. We use a tight-binding model of π-conjugated electrons, with 1/r interactions for large r. In both the weak-coupling limit (defined by W>>U) and the strong-coupling limit (defined by W<

A balance for dark matter bound states

NASA Astrophysics Data System (ADS)

Nozzoli, F.

2017-05-01

Massive particles with self interactions of the order of 0.2 barn/GeV are intriguing Dark Matter candidates from an astrophysical point of view. Current and past experiments for direct detection of massive Dark Matter particles are focusing to relatively low cross sections with ordinary matter, however they cannot rule out very large cross sections, σ/M > 0.01 barn/GeV, due to atmosphere and material shielding. Cosmology places a strong indirect limit for the presence of large interactions among Dark Matter and baryons in the Universe, however such a limit cannot rule out the existence of a small sub-dominant component of Dark Matter with non negligible interactions with ordinary matter in our galactic halo. Here, the possibility of the existence of bound states with ordinary matter, for a similar Dark Matter candidate with not negligible interactions, is considered. The existence of bound states, with binding energy larger than ∼ 1 meV, would offer the possibility to test in laboratory capture cross sections of the order of a barn (or larger). The signature of the detection for a mass increasing of cryogenic samples, due to the possible particle accumulation, would allow the investigation of these Dark Matter candidates with mass up to the GUT scale. A proof of concept for a possible detection set-up and the evaluation of some noise sources are described.

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: polynucleotide binding and cooperativity

PubMed Central

Jose, Davis; Weitzel, Steven E.; Baase, Walter A.; Michael, Miya M.; von Hippel, Peter H.

2015-01-01

We here use our site-specific base analog mapping approach to study the interactions and binding equilibria of cooperatively-bound clusters of the single-stranded DNA binding protein (gp32) of the T4 DNA replication complex with longer ssDNA (and dsDNA) lattices. We show that in cooperatively bound clusters the binding free energy appears to be equi-partitioned between the gp32 monomers of the cluster, so that all bind to the ssDNA lattice with comparable affinity, but also that the outer domains of the gp32 monomers at the ends of the cluster can fluctuate on and off the lattice and that the clusters of gp32 monomers can slide along the ssDNA. We also show that at very low binding densities gp32 monomers bind to the ssDNA lattice at random, but that cooperatively bound gp32 clusters bind preferentially at the 5′-end of the ssDNA lattice. We use these results and the gp32 monomer-binding results of the companion paper to propose a detailed model for how gp32 might bind to and interact with ssDNA lattices in its various binding modes, and also consider how these clusters might interact with other components of the T4 DNA replication complex. PMID:26275774

Controls on the Migration of Fluids in Subduction Zones

NASA Astrophysics Data System (ADS)

Wilson, C. R.; Spiegelman, M. W.; Van Keken, P. E.; Kelemen, P. B.; Hacker, B. R.

2013-12-01

Arc volcanism associated with subduction is generally considered to be caused by the transport in the slab of hydrated minerals to sub-arc depths. In a qualitative sense it appears clear that progressive dehydration reactions in the down-going slab release fluids to the hot overlying mantle wedge, causing flux melting and the migration of melts to the volcanic front. However, the quantitative details of fluid release, migration, melt generation and transport in the wedge remain poorly understood. In particular, there are two fundamental observations that defy quantitative modeling. The first is the location of the volcanic front with respect to intermediate depth earthquakes (e.g. 100+/-40 km; England et al., 2004, Syracuse and Abers, 2006) which is remarkably robust yet insensitive to subduction parameters. This is particularly surprising given new estimates on the variability of fluid release in global subduction zones (e.g. van Keken et al. 2011) which show great sensitivity of fluid release to slab thermal conditions. Reconciling these results implies some robust mechanism for focusing fluids and/or melts toward the wedge corner. The second observation is the global existence of thermally hot erupted basalts and andesites that, if derived from flux melting of the mantle requires sub-arc mantle temperatures of 1300 degrees C over shallow pressures of 1-2 GPa which are not that different from mid-ocean ridge conditions. These observations impose significant challenges for geodynamic models of subduction zones, and in particular for those that do not include the explicit transport of fluids and melts. We present a range of high-resolution models that include a more complete description of coupled fluid and solid mechanics (allowing the fluid to interact with solid rheological variations) together with rheologically consistent solution for temperature and solid flow. Focusing on end-members of a global suite of arc geometries and thermal histories we discuss how successful these interactions are at focusing both fluids and hot solids to sub-arc regions worldwide. We will also evaluate the efficacy of current wet melting parameterizations in these models. When driven by buoyancy alone, fluid migrates through the mantle wedge along a near vertical trajectory. Only interactions with the solid flow at very low values of permeability or high values of fluid viscosity can cause deviations from this path. However, in a viscous, permeable medium, additional pressure gradients are generated by volumetric deformation due to variations in fluid flux. These pressure gradients can significantly modify the fluid flow paths. At shallow depths, compaction channels form along the rheological contrast with the overriding plate while in the mantle wedge itself porosity waves concentrate the fluid. When considering multiple, distributed sources of fluid, interaction between layers in the slab itself can also cause significant focusing. As well as permeability, rheological controls and numerical regularizations place upper and lower bounds on the length-scales over which such interactions occur further modifying the degree of focusing seen. The wide range of behaviors described here is modeled using TerraFERMA (the Transparent Finite Element Rapid Model Assembler), which harnesses the advanced computational libraries FEniCS, PETSc and SPuD to provide the required numerical flexibility.

Effect of rapidly changing river stage on uranium flux through the hyporheic zone.

PubMed

Fritz, Brad G; Arntzen, Evan V

2007-01-01

Measurement of ground water/surface water interaction within the hyporheic zone is increasingly recognized as an important aspect of subsurface contaminant fate and transport. Understanding the interaction between ground water and surface water is critical in developing a complete conceptual model of contaminant transport through the hyporheic zone. At the Hanford Site near Richland, Washington, ground water contaminated with uranium discharges to the Columbia River through the hyporheic zone. Ground water flux varies according to changes in hydraulic gradient caused by fluctuating river stage, which changes in response to operation of dams on the Columbia River. Piezometers and continuous water quality monitoring probes were installed in the hyporheic zone to provide long-term, high-frequency measurement of hydraulic gradient and estimated uranium concentrations. Subsequently, the flux of water and uranium was calculated for each half-hour time period over a 15-month study period. In addition, measurement of water levels in the near-shore unconfined aquifer enhanced the understanding of the relationship between river stage, aquifer elevation, and uranium flux. Changing river stage resulted in fluctuating hydraulic gradient within the hyporheic zone. Further, influx of river water caused lower uranium concentrations as a result of dilution. The methods employed in this study provide a better understanding of the interaction between surface and ground water in a situation with a dynamically varying vertical hydraulic gradient and illustrate how the combination of relatively standard methods can be used to derive an accurate estimation of water and contaminant flux through the hyporheic zone.

Nitrogen and phosphorus exports from high rainfall zone cropping in Australia: issues and opportunities for research.

PubMed

Mathers, Nicole J; Nash, David M; Gangaiya, Philomena

2007-01-01

Cropping is one of the many industries contributing to the excessive loading of nitrogen (N) and phosphorus (P) to rivers and lakes in Australia. Nitrogen and P exports from cropping systems have not been systematically investigated to the same extent as those from other agricultural sectors, such as dairy pastures. Therefore, this review relies heavily on information derived from agronomy and other fundamental studies on soil-nutrient interactions to determine the potential for nutrient export from high rainfall zone (HRZ) cropping. There is a great deal of variation in environmental and management strategies across cropping in the HRZ, which suggests that nutrient exports could occur under a range of scenarios. The potential for exports is therefore discussed within a conceptual framework of nutrient sources, mechanisms for mobilization, and transport pathways in HRZ cropping. Transport refers to nutrient movement by flowing water after it has been mobilized, and export refers to the transfer of nutrients from one landscape compartment (e.g., a soil) to another (e.g., a stream or lake). The transport of nutrients from HRZ cropping can occur through surface and/or subsurface pathways depending on factors such as landform and infiltration and nutrient sorption characteristics of the soil profile. Surface pathways are likely to be more significant for phosphorus. For N, subsurface movement is likely to be as significant as surface movement because nitrates are generally not bound by most soils. Information about mechanisms of nutrient mobilization is essential for developing management strategies to control nutrient exports from HRZ cropping.

Phosphorus loss to runoff water twenty-four hours after application of liquid swine manure or fertilizer.

PubMed

Tabbara, Hadi

2003-01-01

Phosphorus (P) added to soil from fertilizer or manure application could pose a threat to water quality due to its role in eutrophication of fresh water resources. Incorporating such amendments into the soil is an established best management practice (BMP) for reducing soluble P losses in runoff water, but could also lead to higher erosion. The objective of this study was to test whether incorporation of manure or fertilizer 24 h before an intense rain could also reduce sediment-bound and total phosphorus (TP) losses in runoff. A rainfall simulation study was conducted on field plots (sandy loam with 6-7% slope, little surface residue, recently cultivated) that received two application rates of liquid swine manure or liquid ammonium polyphosphate fertilizer, using either surface-broadcast or incorporated methods of application. Incorporation increased the total suspended solids (TSS) concentrations in runoff but mass losses were not affected. Incorporation also reduced flow-weighted concentrations and losses of dissolved reactive phosphorus (DRP) and TP by as much as 30 to 60% depending on source (fertilizer vs. manure) and application rate. Phosphorus is moved below the mixing zone of interaction on incorporation, and thus the effect of the amount and availability of P in this zone is more important than cultivation on subsequent P losses in runoff. Incorporating manure or fertilizer in areas of intense erosive rain, recent extensive tillage, and with little or no surface residue is therefore a best management practice that should be adhered to in order to minimize contamination of surface water. Results also show comparatively lower P losses from manure than fertilizer.

Bedrock geologic map of the Uxbridge quadrangle, Worcester County, Massachusetts, and Providence County, Rhode Island

USGS Publications Warehouse

Walsh, Gregory J.

2014-01-01

The bedrock geology of the 7.5-minute Uxbridge quadrangle consists of Neoproterozoic metamorphic and igneous rocks of the Avalon zone. In this area, rocks of the Avalon zone lie within the core of the Milford antiform, south and east of the terrane-bounding Bloody Bluff fault zone. Permian pegmatite dikes and quartz veins occur throughout the quadrangle. The oldest metasedimentary rocks include the Blackstone Group, which represents a Neoproterozoic peri-Gondwanan marginal shelf sequence. The metasedimentary rocks are intruded by Neoproterozoic arc-related plutonic rocks of the Rhode Island batholith. This report presents mapping by G.J. Walsh. The complete report consists of a map, text pamphlet, and GIS database. The map and text pamphlet are available only as downloadable files (see frame at right). The GIS database is available for download in ESRI™ shapefile and Google Earth™ formats, and includes contacts of bedrock geologic units, faults, outcrops, structural geologic information, geochemical data, and photographs.

Micro-PIXE characterisation of uranium occurrence in the coal zones and the mudstones of the Springbok Flats Basin, South Africa

NASA Astrophysics Data System (ADS)

Nxumalo, V.; Kramers, J.; Mongwaketsi, N.; Przybyłowicz, W. J.

2017-08-01

Uranium occurrence and characterisation in the coal samples of the upper coal zones of the Vryheid Formation and mudstones of the Volksrust Formation was investigated using micro-PIXE (Proton-Induced X-ray Emission) and proton backscattering spectrometry (BS) in conjunction with the nuclear microprobe. Two styles of uranium mineralisation in the Springbok Flats Basin were found: syngenetic mineralisation in which uranium occurs organically bound with coal matrix, with no discrete uranium minerals formed, and epigenetic mineralisation in which uranium occurs in veins that are filled with coffinite with botryoidal texture in the mudstones of the Volksrust Formation, overlying the coal zones. Micro-PIXE analysis made it possible to map out trace elements (including uranium) associated with the coals at low levels of detection, which other techniques such as SEM-EDS and ore microscopy failed. This information will help in better understanding of the best extraction methods to be employed to recover uranium from the coals of the Springbok Flats Basin.

Implications of horsts and grabens on the development of canyons and seismicity on the west africa coast

NASA Astrophysics Data System (ADS)

Ola, Peter S.; Olabode, Solomon O.

2018-04-01

Subsurface basement topography in the Nigerian portion of the Benin Basin has been studied using borehole data of wells drilled to the basement and one strike line of seismic section. Two areas of a sharp drop in topography with a horst in between were observed in the study area. These features were projected to a seismic section in the offshore area of the Benin basin. The result depicts the structural features as horst and grabens coinciding with the Avon platform bounded on the right side by Ise graben, and the Orimedu graben to the left. The observed relationship of the grabens with the present day location of Avon Canyon on the seismic section also suggests an active subsidence along fractured zones. The subsidence, which probably is occurring along similar fracture zones in the Gulf of Guinea, could be responsible for the occasionally reported seismicity on the margin of West Africa. A detailed seismographic study of the fracture zones is recommended.

Limit cycles in planar piecewise linear differential systems with nonregular separation line

NASA Astrophysics Data System (ADS)

Cardin, Pedro Toniol; Torregrosa, Joan

2016-12-01

In this paper we deal with planar piecewise linear differential systems defined in two zones. We consider the case when the two linear zones are angular sectors of angles α and 2 π - α, respectively, for α ∈(0 , π) . We study the problem of determining lower bounds for the number of isolated periodic orbits in such systems using Melnikov functions. These limit cycles appear studying higher order piecewise linear perturbations of a linear center. It is proved that the maximum number of limit cycles that can appear up to a sixth order perturbation is five. Moreover, for these values of α, we prove the existence of systems with four limit cycles up to fifth order and, for α = π / 2, we provide an explicit example with five up to sixth order. In general, the nonregular separation line increases the number of periodic orbits in comparison with the case where the two zones are separated by a straight line.

A broader classification of damage zones

NASA Astrophysics Data System (ADS)

Peacock, D. C. P.; Dimmen, V.; Rotevatn, A.; Sanderson, D. J.

2017-09-01

Damage zones have previously been classified in terms of their positions at fault tips, walls or areas of linkage, with the latter being described in terms of sub-parallel and synchronously active faults. We broaden the idea of linkage to include structures around the intersections of non-parallel and/or non-synchronous faults. These interaction damage zones can be divided into approaching damage zones, where the faults kinematically interact but are not physically connected, and intersection damage zones, where the faults either abut or cross-cut. The damage zone concept is applied to other settings in which strain or displacement variations are taken up by a range of structures, such as at fault bends. It is recommended that a prefix can be added to a wide range of damage zones, to describe the locations in which they formed, e.g., approaching, intersection and fault bend damage zone. Such interpretations are commonly based on limited knowledge of the 3D geometries of the structures, such as from exposure surfaces, and there may be spatial variations. For example, approaching faults and related damage seen in outcrop may be intersecting elsewhere on the fault planes. Dilation in intersection damage zones can represent narrow and localised channels for fluid flow, and such dilation can be influenced by post-faulting stress patterns.

Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions

PubMed Central

Turner, Leslie M; Harr, Bettina

2014-01-01

Mapping hybrid defects in contact zones between incipient species can identify genomic regions contributing to reproductive isolation and reveal genetic mechanisms of speciation. The house mouse features a rare combination of sophisticated genetic tools and natural hybrid zones between subspecies. Male hybrids often show reduced fertility, a common reproductive barrier between incipient species. Laboratory crosses have identified sterility loci, but each encompasses hundreds of genes. We map genetic determinants of testis weight and testis gene expression using offspring of mice captured in a hybrid zone between M. musculus musculus and M. m. domesticus. Many generations of admixture enables high-resolution mapping of loci contributing to these sterility-related phenotypes. We identify complex interactions among sterility loci, suggesting multiple, non-independent genetic incompatibilities contribute to barriers to gene flow in the hybrid zone. DOI: http://dx.doi.org/10.7554/eLife.02504.001 PMID:25487987

Coulomb stress interactions among M≥5.9 earthquakes in the Gorda deformation zone and on the Mendocino Fracture Zone, Cascadia megathrust, and northern San Andreas fault

USGS Publications Warehouse

Rollins, John C.; Stein, Ross S.

2010-01-01

The Gorda deformation zone, a 50,000 km2 area of diffuse shear and rotation offshore northernmost California, has been the site of 20 M ≥ 5.9 earthquakes on four different fault orientations since 1976, including four M ≥ 7 shocks. This is the highest rate of large earthquakes in the contiguous United States. We calculate that the source faults of six recent M ≥ 5.9 earthquakes had experienced ≥0.6 bar Coulomb stress increases imparted by earthquakes that struck less than 9 months beforehand. Control tests indicate that ≥0.6 bar Coulomb stress interactions between M ≥ 5.9 earthquakes separated by Mw = 7.3 Trinidad earthquake are consistent with the locations of M ≥ 5.9 earthquakes in the Gorda zone until at least 1995, as well as earthquakes on the Mendocino Fault Zone in 1994 and 2000. Coulomb stress changes imparted by the 1980 earthquake are also consistent with its distinct elbow-shaped aftershock pattern. From these observations, we derive generalized static stress interactions among right-lateral, left-lateral and thrust faults near triple junctions.

Tactical Determinants of Setting Zone in Elite Men'S Volleyball

PubMed Central

Afonso, Jose; Esteves, Francisca; Araújo, Rui; Thomas, Luke; Mesquita, Isabel

2012-01-01

The interactions between two opposing teams lead to the emergence of unique game patterns. In volleyball, attack efficacy emerges as the strongest predictor of the final result and thus it becomes of foremost importance to understand which game patterns afford the attaining of higher attack efficacies. These rely on the quality of the setting action. In turn, the serve and the serve reception constrain the setter's actions and the attacker's efficacy. Therefore, the purpose of this study was to examine predictors of the setting zone in elite-level men's volleyball. Thirty-one matches of the 2007 World Cup were analyzed, in total 5117 rallies. The dependent variable was the setting zone, and the independent variables were the server player, serve type, serve direction, serve depth, reception zone, receiver player and reception type. Multinomial logistic regression was applied, in order to obtain the estimated likelihood of occurrence of the dependent variable, based on the values of the independent variables (p < 0.05). Only the serve direction showed not to be predictive of the setting zone. Concerning the remaining variables, the tennis jump serve, serves from the middle-player, deep serves, reception near the endline or sidelines, reception by the zone 4 attackers when in defensive zone, and low reception all proved to impair the quality of reception, demanding the setter to play more often in the not acceptable setting zone. Results suggest that, at this level, practice of serve-reception should preferably cover the deep tennis jump serve, and attempt to afford the libero more opportunities to receive. By focusing on the variables with the most predictive power, performers may better allocate their attention towards the most pertinent cues at each moment. Knowledge of these interactive models provides valuable insights into the dynamics of the action sequences, affording coaches important information and guidance. Key pointsA set of key variables interact and allow predicting the setting zone, an important variable in determining attack efficacy in high-level men's volleyball.The tennis jump serve, deep serves, receptions near the endline or sidelines, serves from the middle-players, receptions by the zone 4 attackers when in defensive zone, and low reception enhance the utilization of non-ideal setting zones.By focusing on the variables with the most predictive power, performers may better allocate their attention towards the most pertinent cues at each moment.Knowledge of these interactive models provides valuable insights into the dynamics of the action sequences, affording coaches important information and guidance. PMID:24149123

On the potential energy in a gravitationally bound two-body system

NASA Astrophysics Data System (ADS)

Wilhelm, Klaus; Dwivedi, Bhola N.

2015-01-01

The potential energy problem in a gravitationally bound two-body system is studied in the framework of a recently proposed impact model of gravity (Wilhelm et al., 2013). The concept of a closed system has been modified, before the physical processes resulting in the liberation of the potential energy can be described. The energy is extracted from the background flux of hypothetical interaction entities.

Notes on the origin of the Trojan asteroids

NASA Technical Reports Server (NTRS)

Yoder, C. F.

1979-01-01

The dynamic plausibility of various ideas on the origin of the Trojans is briefly discussed. We take the point of view that the present, tightly bound population has secularly evolved through some mechanism from less to more tightly bound orbit configurations. The mechanisms considered are changes in the Jovian mass or semimajor axis during planetary formation, collisional interactions with external, asteroidal material, and cometary outgassing.

Cooperative heteroassembly of the adenoviral L4-22K and IVa2 proteins onto the viral packaging sequence DNA.

PubMed

Yang, Teng-Chieh; Maluf, Nasib Karl

2012-02-21

Human adenovirus (Ad) is an icosahedral, double-stranded DNA virus. Viral DNA packaging refers to the process whereby the viral genome becomes encapsulated by the viral particle. In Ad, activation of the DNA packaging reaction requires at least three viral components: the IVa2 and L4-22K proteins and a section of DNA within the viral genome, called the packaging sequence. Previous studies have shown that the IVa2 and L4-22K proteins specifically bind to conserved elements within the packaging sequence and that these interactions are absolutely required for the observation of DNA packaging. However, the equilibrium mechanism for assembly of IVa2 and L4-22K onto the packaging sequence has not been determined. Here we characterize the assembly of the IVa2 and L4-22K proteins onto truncated packaging sequence DNA by analytical sedimentation velocity and equilibrium methods. At limiting concentrations of L4-22K, we observe a species with two IVa2 monomers and one L4-22K monomer bound to the DNA. In this species, the L4-22K monomer is promoting positive cooperative interactions between the two bound IVa2 monomers. As L4-22K levels are increased, we observe a species with one IVa2 monomer and three L4-22K monomers bound to the DNA. To explain this result, we propose a model in which L4-22K self-assembly on the DNA competes with IVa2 for positive heterocooperative interactions, destabilizing binding of the second IVa2 monomer. Thus, we propose that L4-22K levels control the extent of cooperativity observed between adjacently bound IVa2 monomers. We have also determined the hydrodynamic properties of all observed stoichiometric species; we observe that species with three L4-22K monomers bound have more extended conformations than species with a single L4-22K bound. We suggest this might reflect a molecular switch that controls insertion of the viral DNA into the capsid.

DNA probe for monitoring dynamic and transient molecular encounters on live cell membranes

PubMed Central

You, Mingxu; Lyu, Yifan; Han, Da; Qiu, Liping; Liu, Qiaoling; Chen, Tao; Wu, Cuichen Sam; Peng, Lu; Zhang, Liqin; Bao, Gang; Tan, Weihong

2017-01-01

Cells interact with the extracellular environment through molecules expressed on the membrane. Disruption of these membrane-bound interactions (or encounters) can result in disease progression. Advances in super-resolution microscopy have allowed membrane encounters to be examined, however, these methods cannot image entire membranes and cannot provide information on the dynamic interactions between membrane-bound molecules. Here, we show a novel DNA probe that can transduce transient membrane encounter events into readable cumulative fluorescence signals. The probe, which translocates from one anchor site to another, such as motor proteins, is realized through a toehold-mediated DNA strand displacement reaction. Using this probe, we successfully monitored rapid encounter events of membrane lipid domains using flow cytometry and fluorescence microscopy. Our results show a preference for encounters within different lipid domains. PMID:28319616

Nano-anisotropic surface coating based on drug immobilized pendant polymer to suppress macrophage adhesion response.

PubMed

Kaladhar, K; Renz, H; Sharma, C P

2015-04-01

Exploring drug molecules for material design, to harness concepts of nano-anisotropy and ligand-receptor interactions, are rather elusive. The aim of this study is to demonstrate the bottom-up design of a single-step and bio-interactive polymeric surface coating, based on drug based pendant polymer. This can be applied on to polystyrene (PS) substrates, to suppress macrophage adhesion and spreading. The drug molecule is used in this coating for two purposes. The first one is drug as a "pendant" group, to produce nano-anisotropic properties that can enable adhesion of the coatings to the substrate. The second purpose is to use the drug as a "ligand", to produce ligand-receptor interaction, between the bound ligand and receptors of albumin, to develop a self-albumin coat over the surface, by the preferential binding of albumin in biological environment, to reduce macrophage adhesion. Our in silico studies show that, diclofenac (DIC) is an ideal drug based "ligand" for albumin. This can also act as a "pendant" group with planar aryl groups. The combination of these two factors can help to harness, both nano-anisotropic properties and biological functions to the polymeric coating. Further, the drug, diclofenac (DIC) is immobilized to the polyvinyl alcohol (PVA), to develop the pendant polymer (PVA-DIC). The interaction of bound DIC with the albumin is a ligand-receptor based interaction, as per the studies by circular dichroism, differential scanning calorimetry, and SDS-PAGE. The non-polar π-π* interactions are regulating; the interactions between PVA bound DIC-DIC interactions, leading to "nano-anisotropic condensation" to form distinct "nano-anisotropic segments" inside the polymeric coating. This is evident from, the thermo-responsiveness and uniform size of nanoparticles, as well as regular roughness in the surface coating, with similar properties as that of nanoparticles. In addition, the hydrophobic DIC-polystyrene (PS) interactions, between the PVA-DIC coating and PS-substrate produce improved coating stability. Subsequently, the PVA-DIC coated substrate has the maximum capacity to suppress the macrophage (RAW 264.7 cell line) adhesion and spreading, which is partly due to wavy-surface topography of hydrophilic PVA and preferential albumin binding capacity of PVA bound DIC. Our result shows that, such surfaces suppress the macrophages, even under stimulation with lipopolysaccharide (LPS). The modified tissue culture plates can be used as an in vitro tool, to study the macrophage response under low spatial cues. Copyright © 2015 Elsevier B.V. All rights reserved.

Synthesis: Ecological Impacts of Forest Vegetation Management

Treesearch

Jerry L. Michael; M. Hermy

2002-01-01

Ecological impacts of forest vegetation management are highly complex with many interactions. Interactions are bounded on the one hand by hierarchical levels from genes to species to ecosystems and on the other hand by the tools used and the intensity of management applied to each level of possible interactions. Some impacts are easy to measure, but impacts become more...

Lieb-Thirring inequality for a model of particles with point interactions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frank, Rupert L.; Seiringer, Robert

2012-09-15

We consider a model of quantum-mechanical particles interacting via point interactions of infinite scattering length. In the case of fermions we prove a Lieb-Thirring inequality for the energy, i.e., we show that the energy is bounded from below by a constant times the integral of the particle density to the power (5/3).

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima

PubMed Central

Yin, Yimeng; Das, Pratyush K; Jolma, Arttu; Zhu, Fangjie; Popov, Alexander; Xu, You; Nilsson, Lennart

2018-01-01

Most transcription factors (TFs) can bind to a population of sequences closely related to a single optimal site. However, some TFs can bind to two distinct sequences that represent two local optima in the Gibbs free energy of binding (ΔG). To determine the molecular mechanism behind this effect, we solved the structures of human HOXB13 and CDX2 bound to their two optimal DNA sequences, CAATAAA and TCGTAAA. Thermodynamic analyses by isothermal titration calorimetry revealed that both sites were bound with similar ΔG. However, the interaction with the CAA sequence was driven by change in enthalpy (ΔH), whereas the TCG site was bound with similar affinity due to smaller loss of entropy (ΔS). This thermodynamic mechanism that leads to at least two local optima likely affects many macromolecular interactions, as ΔG depends on two partially independent variables ΔH and ΔS according to the central equation of thermodynamics, ΔG = ΔH - TΔS. PMID:29638214

Narrow hybrid zone between two subspecies of big sagebrush (Artemisia tridentata: Asteraceae): XI. Plant-insect interactions in reciprocal transplant gardens

Treesearch

John H. Graham; E. Durant McArthur; D. Carl Freeman

2001-01-01

Basin big sagebrush (Artemisia tridentata ssp. tridentata) and mountain big sagebrush (A. t. ssp. vaseyana) hybridize in a narrow zone near Salt Creek, Utah. Reciprocal transplant experiments in this hybrid zone demonstrate that hybrids are more fit than either parental subspecies, but only in the hybrid zone. Do hybrids experience greater, or lesser, use by...

Linking hyporheic flow and nitrogen cycling near the Willamette River - A large river in Oregon, USA

USGS Publications Warehouse

Hinkle, S.R.; Duff, J.H.; Triska, F.J.; Laenen, A.; Gates, E.B.; Bencala, K.E.; Wentz, D.A.; Silva, S.R.

2001-01-01

Several approaches were used to characterize ground water/surface water interactions near the Willamette River - A large (ninth order) river in Oregon, USA. A series of potentiometric surface maps demonstrated the presence of highly dynamic hydraulic gradients between rivers and the adjacent aquifer. Hyporheic zone gradients extended on the order of hundreds of meters. River gains and losses at the river stretch scale (tens of kilometers) were consistent with fluxes implied by the potentiometric surface maps, and apparently reflect regional ground water/surface water interactions. Gains and losses of up to 5-10% of streamflow were observed at this scale. On the river reach scale (1-2 km), gains and losses on the order of 5% of streamflow were interpreted as representing primarily local hyporheic exchange. Isotopic and chemical data collected from shallow hyporheic zone wells demonstrated interaction between regional ground water and river water. The origin of sampled hyporheic zone water ranged from a mixture dominated by regional ground water to water containing 100% river water. The common assumption that ground and river water mix primarily in the river channel is not applicable in this system. Isotopic and chemical data also indicated that significant (nearly complete) vegetative nitrate uptake and/or nitrate reduction occurred in water from 4 of 12 hyporheic zone sites. In these cases, it was primarily nitrate transported to the hyporheic zone in regional ground water that was removed from solution. Isotopes of water and nitrate indicated that hyporheic zone water sampled at two sites was composed of water originating as river water and demonstrated that significant vegetative nitrate uptake and nitrate reduction occurred along these hyporheic zone flowpaths. Thus, the hyporheic zone may, in some instances, serve to remove nitrate from river water. Additional investigations with chemical tools and microbial enzyme assays were conducted at one hyporheic site. A strong vertical redox gradient was observed, with nitrate-limited denitrification potential in deeper sediment and both nitrification and denitrification potential in shallower sediment. Since nitrogen cycling is strongly affected by redox conditions, nitrogen cycling in the hyporheic zone of this large-river system likely is affected by dynamics of ground water/surface water interactions that control fluxes of nitrogen and other redox species to hyporheic zone sediment.

Influence of the Hyporheic Zone on Supersaturated Gas Exposure to Incubating Chum Salmon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arntzen, Evan V.; Geist, David R.; Murray, Katherine J.

2009-12-01

Supersaturated total dissolved gas (TDG) is elevated seasonally in the lower Columbia River, with surface water concentrations approaching 120% saturation of TDG. Chum salmon (Oncorhynchus keta) embryos incubating in nearby spawning areas could be affected if depth-compensated TDG concentrations within the hyporheic zone exceed 103% TDG. The objective of this study was to determine if TDG of the hyporheic zone in two chum salmon spawning areas -- one in a side channel near Ives Island, Washington, and another on the mainstem Columbia River near Multnomah Falls, Oregon -- was affected by the elevated TDG of the surface water. Depth-compensated hyporheicmore » TDG did not exceed 103% at the Multnomah Falls site. However, in the Ives Island area, chum salmon redds were exposed to TDG greater than 103% for more than 600 hours. In response to river depth fluctuations, TDG varied significantly in the Ives Island area, suggesting increased interaction between the hyporheic zone and surface water at that site. We conclude from this study that the interaction between surface water and the hyporheic zone affects the concentration of TDG within the hyporheic zone directly via physical mixing as well as indirectly by altering water chemistry and thus dissolved gas solubility. These interactions are important considerations when estimating TDG exposure within egg pocket environments, facilitating improved exposure estimates, and enabling managers to optimize recovery strategies.« less

Low-temperature overpressurization protection system setpoint analysis using RETRAN-02/MOD5 for Salem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dodson, R.J.; Feltus, M.A.

The low-temperature overpressurization protection system (LTOPS) is designed to protect the reactor pressure vessel (RPV) from brittle failure during startup and cooldown maneuvers in Westinghouse pressurized water reactors. For the Salem power plants, the power-operated relief valves (PORVs) mitigate pressure increases above a setpoint where an operational startup transient may put the RPV in the embrittlement fracture zone. The Title 10, Part 50, Code of Federal Regulations Appendix G limit, given by plant technical specifications, conservatively bounds the maximum pressure allowed during those transients where the RPV can suffer brittle fracture (usually below 350{degrees}F). The Appendix G limit is amore » pressure versus temperature curve that is more restrictive at lower RPV temperatures and allows for higher pressures as the temperature approaches the upper bounding fracture temperature.« less

Limit cycles via higher order perturbations for some piecewise differential systems

NASA Astrophysics Data System (ADS)

Buzzi, Claudio A.; Lima, Maurício Firmino Silva; Torregrosa, Joan

2018-05-01

A classical perturbation problem is the polynomial perturbation of the harmonic oscillator, (x‧ ,y‧) =(- y + εf(x , y , ε) , x + εg(x , y , ε)) . In this paper we study the limit cycles that bifurcate from the period annulus via piecewise polynomial perturbations in two zones separated by a straight line. We prove that, for polynomial perturbations of degree n , no more than Nn - 1 limit cycles appear up to a study of order N. We also show that this upper bound is reached for orders one and two. Moreover, we study this problem in some classes of piecewise Liénard differential systems providing better upper bounds for higher order perturbation in ε, showing also when they are reached. The Poincaré-Pontryagin-Melnikov theory is the main technique used to prove all the results.

Capture and decay of electroweak WIMPonium

NASA Astrophysics Data System (ADS)

Asadi, Pouya; Baumgart, Matthew; Fitzpatrick, Patrick J.; Krupczak, Emmett; Slatyer, Tracy R.

2017-02-01

The spectrum of Weakly-Interacting-Massive-Particle (WIMP) dark matter generically possesses bound states when the WIMP mass becomes sufficiently large relative to the mass of the electroweak gauge bosons. The presence of these bound states enhances the annihilation rate via resonances in the Sommerfeld enhancement, but they can also be produced directly with the emission of a low-energy photon. In this work we compute the rate for SU(2) triplet dark matter (the wino) to bind into WIMPonium—which is possible via single-photon emission for wino masses above 5 TeV for relative velocity v < O(10-2) —and study the subsequent decays of these bound states. We present results with applications beyond the wino case, e.g. for dark matter inhabiting a nonabelian dark sector; these include analytic capture and transition rates for general dark sectors in the limit of vanishing force carrier mass, efficient numerical routines for calculating positive and negative-energy eigenstates of a Hamiltonian containing interactions with both massive and massless force carriers, and a study of the scaling of bound state formation in the short-range Hulth&apos{e}n potential. In the specific case of the wino, we find that the rate for bound state formation is suppressed relative to direct annihilation, and so provides only a small correction to the overall annihilation rate. The soft photons radiated by the capture process and by bound state transitions could permit measurement of the dark matter's quantum numbers; for wino-like dark matter, such photons are rare, but might be observable by a future ground-based gamma-ray telescope combining large effective area and a low energy threshold.

BOUNDS ON LEPTON FLAVOR CHANGING CURRENTS AND THE SOLAR NEUTRINO PUZZLE:. Bounds on Lepton Flavor Changing Currents

NASA Astrophysics Data System (ADS)

degl'Innocenti, Scilla; Ricci, Barbara

We present a phenomenological analysis of a lepton flavor changing current, considering the case of interactions among leptons which change the neutrino flavor and are diagonal in the charged lepton sector. In the case of νe↔νµ transition, we derive a bound on the vector coupling constant GV≤0.16 GF from experimental data on νµ-e scattering. For a transition νe↔νx, from (anti) νe-e scattering experiments and from the analysis of advanced stellar evolutionary phases, we find GV≤0.55 GF. We discuss the compatibility of these data with a possible explanation of the solar neutrino puzzle. We also analyze how the present bounds can be improved in future long baseline neutrino experiments and atmospheric neutrino detectors.

Utilizing tagged paramagnetic shift reagents to monitor protein dynamics by NMR.

PubMed

Ye, Libin; Van Eps, Ned; Li, Xiang; Ernst, Oliver P; Prosser, R Scott

2017-11-01

Calmodulin is a ubiquitous calcium sensor protein, known to serve as a critical interaction hub with a wide range of signaling partners. While the holo form of calmodulin (CaM-4Ca 2+ ) has a well-defined ground state structure, it has been shown to undergo exchange, on a millisecond timescale, to a conformation resembling that of the peptide bound state. Tagged paramagnetic relaxation agents have been previously used to identify long-range dipolar interactions through relaxation effects on nuclear spins of interest. In the case of calmodulin, this lead to the determination of the relative orientation of the N- and C-terminal domains and the presence of a weakly populated peptide bound like state. Here, we make use of pseudocontact shifts from a tagged paramagnetic shift reagent which allows us to define minor states both in 13 C and 15 N NMR spectra and through 13 C- and 15 N-edited 1 H-CPMG relaxation dispersion measurements. This is validated by pulsed EPR (DEER) spectroscopy which reveals an ensemble consisting of a compact peptide-bound like conformer, an intermediate peptide-bound like conformer, and a (dumbbell-like) extended ground state conformer of CaM-4Ca 2+ , where addition of the MLCK peptide increases the population of the peptide-bound conformers. This article is part of a Special Issue entitled: Biophysics in Canada, edited by Lewis Kay, John Baenziger, Albert Berghuis and Peter Tieleman. Copyright © 2017 Elsevier B.V. All rights reserved.

Geology and geomorphology of Bear Lake Valley and upper Bear River, Utah and Idaho

USGS Publications Warehouse

Reheis, M.C.; Laabs, B.J.C.; Kaufman, D.S.

2009-01-01

Bear Lake, on the Idaho-Utah border, lies in a fault-bounded valley through which the Bear River flows en route to the Great Salt Lake. Surficial deposits in the Bear Lake drainage basin provide a geologic context for interpretation of cores from Bear Lake deposits. In addition to groundwater discharge, Bear Lake received water and sediment from its own small drainage basin and sometimes from the Bear River and its glaciated headwaters. The lake basin interacts with the river in complex ways that are modulated by climatically induced lake-level changes, by the distribution of active Quaternary faults, and by the migration of the river across its fluvial fan north of the present lake. The upper Bear River flows northward for ???150 km from its headwaters in the northwestern Uinta Mountains, generally following the strike of regional Laramide and late Cenozoic structures. These structures likely also control the flow paths of groundwater that feeds Bear Lake, and groundwater-fed streams are the largest source of water when the lake is isolated from the Bear River. The present configuration of the Bear River with respect to Bear Lake Valley may not have been established until the late Pliocene. The absence of Uinta Range-derived quartzites in fluvial gravel on the crest of the Bear Lake Plateau east of Bear Lake suggests that the present headwaters were not part of the drainage basin in the late Tertiary. Newly mapped glacial deposits in the Bear River Range west of Bear Lake indicate several advances of valley glaciers that were probably coeval with glaciations in the Uinta Mountains. Much of the meltwater from these glaciers may have reached Bear Lake via groundwater pathways through infiltration in the karst terrain of the Bear River Range. At times during the Pleistocene, the Bear River flowed into Bear Lake and water level rose to the valley threshold at Nounan narrows. This threshold has been modified by aggradation, downcutting, and tectonics. Maximum lake levels have decreased from as high as 1830 m to 1806 m above sea level since the early Pleistocene due to episodic downcutting by the Bear River. The oldest exposed lacustrine sediments in Bear Lake Valley are probably of Pliocene age. Several high-lake phases during the early and middle Pleistocene were separated by episodes of fluvial incision. Threshold incision was not constant, however, because lake highstands of as much as 8 m above bedrock threshold level resulted from aggradation and possibly landsliding at least twice during the late-middle and late Pleistocene. Abandoned stream channels within the low-lying, fault-bounded region between Bear Lake and the modern Bear River show that Bear River progressively shifted northward during the Holocene. Several factors including faulting, location of the fluvial fan, and channel migration across the fluvial fan probably interacted to produce these changes in channel position. Late Quaternary slip rates on the east Bear Lake fault zone are estimated by using the water-level history of Bear Lake, assuming little or no displacement on dated deposits on the west side of the valley. Uplifted lacustrine deposits representing Pliocene to middle Pleistocene highstands of Bear Lake on the footwall block of the east Bear Lake fault zone provide dramatic evidence of long-term slip. Slip rates during the late Pleistocene increased from north to south along the east Bear Lake fault zone, consistent with the tectonic geomorphology. In addition, slip rates on the southern section of the fault zone have apparently decreased over the past 50 k.y. Copyright ?? 2009 The Geological Society of America.

Pits, rifts and slumps: the summit structure of Piton de la Fournaise

NASA Astrophysics Data System (ADS)

Carter, Adam; van Wyk de Vries, Benjamin; Kelfoun, Karim; Bachèlery, Patrick; Briole, Pierre

2007-06-01

A clear model of structures and associated stress fields of a volcano can provide a framework in which to study and monitor activity. We propose a volcano-tectonic model for the dynamics of the summit of Piton de la Fournaise (La Reunion Island, Indian Ocean). The summit contains two main pit crater structures (Dolomieu and Bory), two active rift zones, and a slumping eastern sector, all of which contribute to the actual fracture system. Dolomieu has developed over 100 years by sudden large collapse events and subsequent smaller drops that include terrace formation. Small intra-pit collapse scars and eruptive fissures are located along the southern floor of Dolomieu. The western pit wall of Dolomieu has a superficial inward dipping normal fault boundary connected to a deeper ring fault system. Outside Dolomieu, an oval extension zone containing sub-parallel pit-related fractures extends to a maximum distance of 225 m from the pit. At the summit the main trend for eruptive fissures is N80°, normal to the north south rift zone. The terraced structure of Dolomieu has been reproduced by analogue models with a roof to width ratio of approximately 1, suggesting an original magma chamber depth of about 1 km. Such a chamber may continue to act as a storage location today. The east flank has a convex concave profile and is bounded by strike-slip fractures that define a gravity slump. This zone is bound to the north by strike-slip fractures that may delineate a shear zone. The southern reciprocal shear zone is probably marked by an alignment of large scoria cones and is hidden by recent aa lavas. The slump head intersects Dolomieu pit and may slide on a hydrothermally altered layer known to be located at a depth of around 300 m. Our model has the summit activity controlled by the pit crater collapse structure, not the rifts. The rifts become important on the mid-flanks of the cone, away from pit-related fractures. On the east flank the superficial structures are controlled by the slump. We suggest that during pit subsidence intra-pit eruptions may occur. During tumescence, however, the pit system may become blocked and a flank eruption is more likely. Intrusions along the rift may cause deformation that subsequently increases the slump’s potential to deform. Conversely, slumping may influence the east flank stress distribution and locally control intrusion direction. These predictions can be tested with monitoring data to validate the model and, eventually, improve monitoring.

Roles of intramolecular and intermolecular interactions in functional regulation of the Hsp70 J-protein co-chaperone sis1

DOE PAGES

Yu, Hyun Young; Ziegelhoffer, Thomas; Osipiuk, Jerzy; ...

2015-02-13

Unlike other Hsp70 molecular chaperones, those of the eukaryotic cytosol have four residues, EEVD, at their C-termini. EEVD(Hsp70) binds adaptor proteins of the Hsp90 chaperone system and mitochondrial membrane preprotein receptors, thereby facilitating processing of Hsp70-bound clients through protein folding and translocation pathways. Among J-protein co-chaperones functioning in these pathways Sis1 is unique, as it also binds the EEVD(Hsp70) motif. However, little is known about the role of the Sis1:EEVD(Hsp70) interaction. We found that deletion of EEVD(Hsp70) abolished the ability of Sis1, but not the ubiquitous J-protein Ydj1, to partner with Hsp70 in in vitro protein refolding. Sis1 co-chaperone activitymore » with Hsp70ΔEEVD was restored upon substitution of a glutamic acid of the J-domain. Structural analysis revealed that this key glutamic acid, which is not present in Ydj1, forms a salt bridge with an arginine of the immediately adjacent glycine-rich region. Thus, restoration of Sis1 in vitro activity suggests that intramolecular interaction(s) between the J-domain and glycine-rich region controls co-chaperone activity, which is optimal only when Sis1 interacts with the EEVD(Hsp70) motif. Yet, we found that disruption of the Sis1:EEVD(Hsp70) interaction enhances the ability of Sis1 to substitute for Ydj1 in vivo. Our results are consistent with the idea that interaction of Sis1 with EEVD(Hsp70) minimizes transfer of Sis1-bound clients to Hsp70s that are primed for client transfer to folding and translocation pathways by their preassociation with EEVD-binding adaptor proteins. Finally, these interactions may be one means by which cells triage Ydj1- and Sis1-bound clients to productive and quality control pathways, respectively.« less

Roles of Intramolecular and Intermolecular Interactions in Functional Regulation of the Hsp70 J-protein Co-chaperone Sis1

PubMed Central

Yu, Hyun Young; Ziegelhoffer, Thomas; Osipiuk, Jerzy; Ciesielski, Szymon J.; Baranowski, Maciej; Zhou, Min; Joachimiak, Andrzej; Craig, Elizabeth A.

2015-01-01

Unlike other Hsp70 molecular chaperones, those of the eukaryotic cytosol have four residues, EEVD, at their C-termini. EEVD(Hsp70) binds adaptor proteins of the Hsp90 chaperone system and mitochondrial membrane preprotein receptors, thereby facilitating processing of Hsp70-bound clients through protein folding and translocation pathways. Among J-protein co-chaperones functioning in these pathways Sis1 is unique, as it also binds the EEVD(Hsp70) motif. However, little is known about the role of the Sis1:EEVD(Hsp70) interaction. We found that deletion of EEVD(Hsp70) abolished the ability of Sis1, but not the ubiquitous J-protein Ydj1, to partner with Hsp70 in in vitro protein refolding. Sis1 co-chaperone activity with Hsp70ΔEEVD was restored upon substitution of a glutamic acid of the J-domain. Structural analysis revealed that this key glutamic acid, which is not present in Ydj1, forms a salt bridge with an arginine of the immediately adjacent glycine-rich region. Thus, restoration of Sis1 in vitro activity suggests that intramolecular interaction(s) between the J-domain and glycine-rich region controls co-chaperone activity, which is optimal only when Sis1 interacts with the EEVD(Hsp70) motif. Yet, we found that disruption of the Sis1:EEVD(Hsp70) interaction enhances the ability of Sis1 to substitute for Ydj1 in vivo. Our results are consistent with the idea that interaction of Sis1 with EEVD(Hsp70) minimizes transfer of Sis1-bound clients to Hsp70s that are primed for client transfer to folding and translocation pathways by their preassociation with EEVD-binding adaptor proteins. These interactions may be one means by which cells triage Ydj1- and Sis1-bound clients to productive and quality control pathways, respectively. PMID:25687964

Predicting Short-Term Remembering as Boundedly Optimal Strategy Choice.

PubMed

Howes, Andrew; Duggan, Geoffrey B; Kalidindi, Kiran; Tseng, Yuan-Chi; Lewis, Richard L

2016-07-01

It is known that, on average, people adapt their choice of memory strategy to the subjective utility of interaction. What is not known is whether an individual's choices are boundedly optimal. Two experiments are reported that test the hypothesis that an individual's decisions about the distribution of remembering between internal and external resources are boundedly optimal where optimality is defined relative to experience, cognitive constraints, and reward. The theory makes predictions that are tested against data, not fitted to it. The experiments use a no-choice/choice utility learning paradigm where the no-choice phase is used to elicit a profile of each participant's performance across the strategy space and the choice phase is used to test predicted choices within this space. They show that the majority of individuals select strategies that are boundedly optimal. Further, individual differences in what people choose to do are successfully predicted by the analysis. Two issues are discussed: (a) the performance of the minority of participants who did not find boundedly optimal adaptations, and (b) the possibility that individuals anticipate what, with practice, will become a bounded optimal strategy, rather than what is boundedly optimal during training. Copyright © 2015 Cognitive Science Society, Inc.

Guiding neuron development with planar surface gradients of substrate cues deposited using microfluidic devices.

PubMed

Millet, Larry J; Stewart, Matthew E; Nuzzo, Ralph G; Gillette, Martha U

2010-06-21

Wiring the nervous system relies on the interplay of intrinsic and extrinsic signaling molecules that control neurite extension, neuronal polarity, process maturation and experience-dependent refinement. Extrinsic signals establish and enrich neuron-neuron interactions during development. Understanding how such extrinsic cues direct neurons to establish neural connections in vitro will facilitate the development of organized neural networks for investigating the development and function of nervous system networks. Producing ordered networks of neurons with defined connectivity in vitro presents special technical challenges because the results must be compliant with the biological requirements of rewiring neural networks. Here we demonstrate the ability to form stable, instructive surface-bound gradients of laminin that guide postnatal hippocampal neuron development in vitro. Our work uses a three-channel, interconnected microfluidic device that permits the production of adlayers of planar substrates through the combination of laminar flow, diffusion and physisorption. Through simple flow modifications, a variety of patterns and gradients of laminin (LN) and fluorescein isothiocyanate-conjugated poly-l-lysine (FITC-PLL) were deposited to present neurons with an instructive substratum to guide neuronal development. We present three variations in substrate design that produce distinct growth regimens for postnatal neurons in dispersed cell cultures. In the first approach, diffusion-mediated gradients of LN were formed on cover slips to guide neurons toward increasing LN concentrations. In the second approach, a combined gradient of LN and FITC-PLL was produced using aspiration-driven laminar flow to restrict neuronal growth to a 15 microm wide growth zone at the center of the two superimposed gradients. The last approach demonstrates the capacity to combine binary lines of FITC-PLL in conjunction with surface gradients of LN and bovine serum albumin (BSA) to produce substrate adlayers that provide additional levels of control over growth. This work demonstrates the advantages of spatio-temporal fluid control for patterning surface-bound gradients using a simple microfluidics-based substrate deposition procedure. We anticipate that this microfluidics-based patterning approach will provide instructive patterns and surface-bound gradients to enable a new level of control in guiding neuron development and network formation.

Steric Pressure among Membrane-Bound Polymers Opposes Lipid Phase Separation.

PubMed

Imam, Zachary I; Kenyon, Laura E; Carrillo, Adelita; Espinoza, Isai; Nagib, Fatema; Stachowiak, Jeanne C

2016-04-19

Lipid rafts are thought to be key organizers of membrane-protein complexes in cells. Many proteins that interact with rafts have bulky polymeric components such as intrinsically disordered protein domains and polysaccharide chains. Therefore, understanding the interaction between membrane domains and membrane-bound polymers provides insights into the roles rafts play in cells. Multiple studies have demonstrated that high concentrations of membrane-bound polymeric domains create significant lateral steric pressure at membrane surfaces. Furthermore, our recent work has shown that lateral steric pressure at membrane surfaces opposes the assembly of membrane domains. Building on these findings, here we report that membrane-bound polymers are potent suppressors of membrane phase separation, which can destabilize lipid domains with substantially greater efficiency than globular domains such as membrane-bound proteins. Specifically, we created giant vesicles with a ternary lipid composition, which separated into coexisting liquid ordered and disordered phases. Lipids with saturated tails and poly(ethylene glycol) (PEG) chains conjugated to their head groups were included at increasing molar concentrations. When these lipids were sparse on the membrane surface they partitioned to the liquid ordered phase. However, as they became more concentrated, the fraction of GUVs that were phase-separated decreased dramatically, ultimately yielding a population of homogeneous membrane vesicles. Experiments and physical modeling using compositions of increasing PEG molecular weight and lipid miscibility phase transition temperature demonstrate that longer polymers are the most efficient suppressors of membrane phase separation when the energetic barrier to lipid mixing is low. In contrast, as the miscibility transition temperature increases, longer polymers are more readily driven out of domains by the increased steric pressure. Therefore, the concentration of shorter polymers required to suppress phase separation decreases relative to longer polymers. Collectively, our results demonstrate that crowded, membrane-bound polymers are highly efficient suppressors of phase separation and suggest that the ability of lipid domains to resist steric pressure depends on both their lipid composition and the size and concentration of the membrane-bound polymers they incorporate.

NMR analyses of the conformations of L-isoleucine and L-valine bound to Escherichia coli isoleucyl-tRNA synthetase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kohda, D.; Kawai, G.; Yokoyama, S.

1987-10-06

The 400-MHz /sup 1/H NMR spectra of L-isoleucine and L-valine were measured in the presence of Escherichia coli isoleucyl-tRNA synthetase (IleRS). Because of chemical exchange of L-isoleucine or L-valine between the free state and the IleRS-bound state, a transferred nuclear Overhauser effect (TRNOE) was observed among proton resonances of L-isoleucine or L-valine. However, in the presence of isoleucyl adenylate tightly bound to the amino acid activation site of IleRS, no TRNOE for L-isoleucine or L-valine was observed. This indicates that the observed TRNOE is due to the interaction of L-isoleucine or L-valine with the amino acid activation site of IleRS.more » The conformations of these amino acids in the amino acid activation site of IleRS were determined by the analyses of time dependences of TRNOEs and TRNOE action spectra. The IleRS-bound L-isoleucine takes the gauche/sup +/ form about the C/sub ..cap alpha../-C/sub ..beta../ bond and the trans form about the C/sub ..beta../-C/sub ..gamma../sub 1// bond. The IleRS-bound L-valine takes the guache/sup -/ form about the C/sub ..cap alpha../-C/sub ..beta../ bond. Thus, the conformation of the IleRS-bound L-valine is the same as that of IleRS-bound L-isoleucine except for the delta-methyl group. The side chain of L-isoleucine or L-valine lies in an aliphatic hydrophobic pocket of the active site of IleRS. Such hydrophobic interaction with IleRS is more significant for L-isoleucine than for L-valine. The TRNOE analysis is useful for studying the amino acid discrimination mechanism of aminoacyl-tRNA synthetases.« less

Fault Slip Partitioning in the Eastern California Shear Zone-Walker Lane Belt: Pliocene to Late Pleistocene Contraction Across the Mina Deflection

NASA Astrophysics Data System (ADS)

Lee, J.; Stockli, D.; Gosse, J.

2007-12-01

Two different mechanisms have been proposed for fault slip transfer between the subparallel NW-striking dextral- slip faults that dominant the Eastern California Shear Zone (ECSZ)-Walker Lane Belt (WLB). In the northern WLB, domains of sinistral-slip along NE-striking faults and clockwise block rotation within a zone of distributed deformation accommodated NW-dextral shear. A somewhat modified version of this mechanism was also proposed for the Mina deflection, southern WLB, whereby NE-striking sinistral faults formed as conjugate faults to the primary zone of NW-dextral shear; clockwise rotation of the blocks bounding the sinistral faults accommodated dextral slip. In contrast, in the northern ECSZ and Mina deflection, domains of NE-striking pure dip-slip normal faults, bounded by NW-striking dextral-slip faults, exhibited no rotation; the proposed mechanism of slip transfer was one of right-stepping, high angle normal faults in which the magnitude of extension was proportional to the amount of strike-slip motion transferred. New geologic mapping, tectonic geomorphologic, and geochronologic data from the Queen Valley area, southern Mina deflection constrain Pliocene to late Quaternary fault geometries, slip orientations, slip magnitudes, and slip rates that bear on the mechanism of fault slip transfer from the relatively narrow northern ECSZ to the broad deformation zone that defines the Mina deflection. Four different fault types and orientations cut across the Queen Valley area: (1) The NE-striking normal-slip Queen Valley fault; (2) NE-striking sinistral faults; (3) the NW-striking dextral Coyote Springs fault, which merges into (4) a set of EW-striking thrust faults. (U-Th)/He apatite and cosmogenic radionuclide data, combined with magnitude of fault offset measurements, indicate a Pliocene to late Pleistocene horizontal extension rate of 0.2-0.3 mm/yr across the Queen Valley fault. Our results, combined with published slip rates for the dextral White Mountain fault zone (0.3-0.8 mm/yr) and the eastern sinistral Coaldale fault (0.4 mm/yr) suggest that transfer of dextral slip from the narrow White Mountains fault zone is explained best by a simple shear couple whereby slip is partitioned into three different components: horizontal extension along the Queen Valley fault, dominantly dextral slip along the Coyote Springs fault, and dominantly sinistral slip along the Coaldale fault. A velocity vector diagram illustrating fault slip partitioning predicts contraction rates of <0.1 to 0.5 mm/yr across the Coyote Springs and western Coaldale faults. The predicted long-term contraction across the Mina deflection is consistent with present-day GPS data.

Localized end states in density modulated quantum wires and rings.

PubMed

Gangadharaiah, Suhas; Trifunovic, Luka; Loss, Daniel

2012-03-30

We study finite quantum wires and rings in the presence of a charge-density wave gap induced by a periodic modulation of the chemical potential. We show that the Tamm-Shockley bound states emerging at the ends of the wire are stable against weak disorder and interactions, for discrete open chains and for continuum systems. The low-energy physics can be mapped onto the Jackiw-Rebbi equations describing massive Dirac fermions and bound end states. We treat interactions via the continuum model and show that they increase the charge gap and further localize the end states. The electrons placed in the two localized states on the opposite ends of the wire can interact via exchange interactions and this setup can be used as a double quantum dot hosting spin qubits. The existence of these states could be experimentally detected through the presence of an unusual 4π Aharonov-Bohm periodicity in the spectrum and persistent current as a function of the external flux.

Exploratory study of possible resonances in heavy meson - heavy baryon coupled-channel interactions

NASA Astrophysics Data System (ADS)

Shen, Chao-Wei; Rönchen, Deborah; Meißner, Ulf-G.; Zou, Bing-Song

2018-01-01

We use a unitary coupled-channel model to study the \\bar{{{D}}}{{{Λ }}}{{c}}-\\bar{{{D}}}{{{Σ }}}{{c}} interactions. In our calculation, SU(3) flavor symmetry is applied to determine the coupling constants. Several resonant and bound states with different spin and parity are dynamically generated in the mass range of the recently observed pentaquarks. The approach is also extended to the hidden beauty sector to study the {{B}}{{{Λ }}}{{b}}-{{B}}{{{Σ }}}{{b}} interactions. As the b-quark mass is heavier than the c-quark mass, there are more resonances observed for the {{B}}{{{Λ }}}{{b}}-{{B}}{{{Σ }}}{{b}} interactions and they are more tightly bound. Supported by DFG and NSFC through funds provided to the Sino-German CRC 110 “Symmetry and the Emergence of Structure in QCD” (NSFC 11621131001, DFG TR110), as well as an NSFC fund (11647601). The work of UGM was also supported by the CAS President’s International Fellowship Initiative (PIFI) (2017VMA0025)

The helix bundle: A reversible lipid binding motif

PubMed Central

Narayanaswami, Vasanthy; Kiss, Robert S.; Weers, Paul M.M.

2009-01-01

Apolipoproteins are the protein components of lipoproteins that have the innate ability to inter convert between a lipid-free and a lipid-bound form in a facile manner, a remarkable property conferred by the helix bundle motif. Composed of a series of four or five amphipathic α-helices that fold to form a helix bundle, this motif allows the en face orientation of the hydrophobic faces of the α-helices in the protein interior in the lipid-free state. A conformational switch then permits helix-helix interactions to be substituted by helix-lipid interactions upon lipid binding interaction. This review compares the apolipoprotein high resolution structures and the factors that trigger this switch in insect apolipophorin III and the mammalian apolipoproteins, apolipoprotein E and apolipoprotein A-I, pointing out the commonalities and key differences in the mode of lipid interaction. Further insights into the lipid bound conformation of apolipoproteins are required to fully understand their functional role under physiological conditions. PMID:19770066

The {{\\rm{D}}\\bar{{\\rm{D}}}}^{{\\rm{* }}} interaction with isospin zero in an extended hidden gauge symmetry approach

NASA Astrophysics Data System (ADS)

Sun, Bao-Xi; Wan, Da-Ming; Zhao, Si-Yu

2018-05-01

The {{{D}}\\bar{{{D}}}}{{* }} interaction via a ρ or ω exchange is constructed within an extended hidden gauge symmetry approach, where the strange quark is replaced by the charm quark in the SU(3) flavor space. With this {{{D}}\\bar{{{D}}}}{{* }} interaction, a bound state slightly lower than the {{{D}}\\bar{{{D}}}}{{* }} threshold is generated dynamically in the isospin zero sector by solving the Bethe-Salpeter equation in the coupled-channel approximation, which might correspond to the X(3872) particle announced by many collaborations. This formulism is also used to study the {{{B}}\\bar{{{B}}}}{{* }} interaction, and a {{{B}}\\bar{{{B}}}}{{* }} bound state with isospin zero is generated dynamically, which has no counterpart listed in the review of the Particle Data Group. Furthermore, the one-pion exchange between the D meson and the {\\bar{{{D}}}}{{* }} is analyzed precisely, and we do not think the one-pion exchange potential need be considered when the Bethe-Salpeter equation is solved.

Searching for DNA Lesions: Structural Evidence for Lower- and Higher-Affinity DNA Binding Conformations of Human Alkyladenine DNA Glycosylase

PubMed Central

2011-01-01

To efficiently repair DNA, human alkyladenine DNA glycosylase (AAG) must search the million-fold excess of unmodified DNA bases to find a handful of DNA lesions. Such a search can be facilitated by the ability of glycosylases, like AAG, to interact with DNA using two affinities: a lower-affinity interaction in a searching process and a higher-affinity interaction for catalytic repair. Here, we present crystal structures of AAG trapped in two DNA-bound states. The lower-affinity depiction allows us to investigate, for the first time, the conformation of this protein in the absence of a tightly bound DNA adduct. We find that active site residues of AAG involved in binding lesion bases are in a disordered state. Furthermore, two loops that contribute significantly to the positive electrostatic surface of AAG are disordered. Additionally, a higher-affinity state of AAG captured here provides a fortuitous snapshot of how this enzyme interacts with a DNA adduct that resembles a one-base loop. PMID:22148158

Aeromagnetic map of the Arnold Mesa Roadless Area, Yavapai County, Arizona

USGS Publications Warehouse

Davis, Willard E.; Wolfe, Edward W.

1983-01-01

The Arnold Mesa Roadless Area is within the transition zone between the Colorado Plateaus to the northeast and the Basin and Range province to the southwest. The transition zone is a belt about 701 miles (120 km) wide that extends diagonally from northwest to south east across central Arizona and parallels the topographic margin of the plateaus. The study area is underlain by Precambrian rocks and gently dipping Paleozoic strata that are largely covered by basaltic lavas and pyroclastic deposits of Miocene age ( McKee and Anderson, 1971). Dacite breccia and tuff are locally interbedded with the basaltic rocks. Sedimentary deposits of late Cenozoic age are dominant in the Verde Valley from about Chasm Creek north; they accumulated in a depositional basin bounded on the west by the Verde fault.

Significant Shear Preceded Rupture in the Oblique Gulf of California Rift

NASA Astrophysics Data System (ADS)

Bennett, S. E.; Oskin, M. E.

2011-12-01

Significant shear deformation during the early history of a rift may profoundly affect the efficiency and success of lithospheric rupture and formation of a new ocean basin. The active Gulf of California (GOC) rift is well suited to study the role of rift obliquity in continental rupture. Transtensional strain in the GOC is accommodated along en-echelon pull-apart basins bounded by dip-slip and oblique-slip faults and linked by strike-slip faults and accommodation zones. Lithospheric rupture is well documented at ca. 6 Ma when >90% of Pacific-North American relative plate motion localized into the GOC. In the northern GOC, the eastern rift margin of the Upper Delfín-Upper Tiburón rift segment preserves an onshore record of the earliest phase of this localization process. Two NW-striking shear zones bound this rift segment, spaced ~37 km apart. Our geologic mapping, paleomagnetic measurements, and geochronology of pre-rift and syn-rift volcanic and sedimentary rocks provide timing and displacement constraints for these shear zones. The Coastal Sonora Fault Zone, exposed on northeast Isla Tiburón and in adjacent coastal Sonora, helped form and then truncate transtensional non-marine basins beginning ca. 7 Ma. On northeast Isla Tiburón, Tertiary units do not match across the ~10 km long Yawassag fault, providing a minimum estimate for total dextral displacement. In coastal Sonora, we document ~12 km of discrete dextral displacement, clockwise block rotations up to 53°, and up to 75% extension that together accommodated 15.7 km of transtensional strain towards azimuth 294° over a 1 Myr period. These estimates do not include tens of kilometers of dextral displacement on the Sacrificio fault that bounds the NE side of this shear zone. The southern of the two shear zones is the La Cruz fault, which transects southern Isla Tiburón. Associated dextral transpression and transtension formed the elongate Southwest Isla Tiburón-Sauzal basin. This basin transitions from non-marine in the SE to marine in the NW where fossil-rich marine sandstone and conglomerate is underlain by a 6.7 ± 0.8 Ma tuff. The base of the marine basin displays ~1 km of dextral displacement, while Early Miocene volcanic and sedimentary rocks are offset tens of kilometers. This displacement history supports significant proto-Gulf shear along the La Cruz fault. Overall, our results suggest that significant shearing along strike-slip faults initiated by ca. 7 Ma, at least 1 Myr prior and proximal to the locus of continental rupture in the GOC. Thus far, this documents the easternmost and earliest phase of rift-related shear at this latitude. We hypothesize that progressive localization of dextral shear into a broader region of extension may act as a catalyst for lithospheric rupture. Such a configuration would resemble how the dextral Walker Lane has become embedded within the extensional Basin and Range Province. We envision that normal faults kinematically linked to strike-slip faults are able to localize crustal thinning and overcome negative feedback processes that otherwise lead to formation of wide rifts. Thus, shearing on strike-slip faults may have been a critical mechanism for strain localization and efficient lithospheric thinning that preceded and eventually led to continental rupture in the Gulf of California.

The Tetrodotoxin Receptor of Voltage-Gated Sodium Channels—Perspectives from Interactions with μ-Conotoxins

PubMed Central

French, Robert J.; Yoshikami, Doju; Sheets, Michael F.; Olivera, Baldomero M.

2010-01-01

Neurotoxin receptor site 1, in the outer vestibule of the conducting pore of voltage-gated sodium channels (VGSCs), was first functionally defined by its ability to bind the guanidinium-containing agents, tetrodotoxin (TTX) and saxitoxin (STX). Subsequent studies showed that peptide μ-conotoxins competed for binding at site 1. All of these natural inhibitors block single sodium channels in an all-or-none manner on binding. With the discovery of an increasing variety of μ-conotoxins, and the synthesis of numerous derivatives, observed interactions between the channel and these different ligands have become more complex. Certain μ-conotoxin derivatives block single-channel currents partially, rather than completely, thus enabling the demonstration of interactions between the bound toxin and the channel’s voltage sensor. Most recently, the relatively small μ-conotoxin KIIIA (16 amino acids) and its variants have been shown to bind simultaneously with TTX and exhibit both synergistic and antagonistic interactions with TTX. These interactions raise new pharmacological possibilities and place new constraints on the possible structures of the bound complexes of VGSCs with these toxins. PMID:20714429

Scalar field as a Bose-Einstein condensate?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Castellanos, Elías; Escamilla-Rivera, Celia; Macías, Alfredo

We discuss the analogy between a classical scalar field with a self-interacting potential, in a curved spacetime described by a quasi-bounded state, and a trapped Bose-Einstein condensate. In this context, we compare the Klein-Gordon equation with the Gross-Pitaevskii equation. Moreover, the introduction of a curved background spacetime endows, in a natural way, an equivalence to the Gross-Pitaevskii equation with an explicit confinement potential. The curvature also induces a position dependent self-interaction parameter. We exploit this analogy by means of the Thomas-Fermi approximation, commonly used to describe the Bose-Einstein condensate, in order to analyze the quasi bound scalar field distribution surroundingmore » a black hole.« less

Lower Bound on the Mean Square Displacement of Particles in the Hard Disk Model

NASA Astrophysics Data System (ADS)

Richthammer, Thomas

2016-08-01

The hard disk model is a 2D Gibbsian process of particles interacting via pure hard core repulsion. At high particle density the model is believed to show orientational order, however, it is known not to exhibit positional order. Here we investigate to what extent particle positions may fluctuate. We consider a finite volume version of the model in a box of dimensions 2 n × 2 n with arbitrary boundary configuration, and we show that the mean square displacement of particles near the center of the box is bounded from below by c log n. The result generalizes to a large class of models with fairly arbitrary interaction.

Interaction dynamics of multiple autonomous mobile robots in bounded spatial domains

NASA Technical Reports Server (NTRS)

Wang, P. K. C.

1989-01-01

A general navigation strategy for multiple autonomous robots in a bounded domain is developed analytically. Each robot is modeled as a spherical particle (i.e., an effective spatial domain about the center of mass); its interactions with other robots or with obstacles and domain boundaries are described in terms of the classical many-body problem; and a collision-avoidance strategy is derived and combined with homing, robot-robot, and robot-obstacle collision-avoidance strategies. Results from homing simulations involving (1) a single robot in a circular domain, (2) two robots in a circular domain, and (3) one robot in a domain with an obstacle are presented in graphs and briefly characterized.

The Dual Role of Vegetation as a Constraint on Mass and Energy Flux into the Critical Zone and as an Emergent Property of Geophysical Critical Zone Structure

NASA Astrophysics Data System (ADS)

Brooks, P. D.; Swetnam, T. L.; Barnard, H. R.; Singha, K.; Harpold, A.; Litvak, M. E.

2017-12-01

Spatial patterns in vegetation long have been used to scale both landsurface-atmosphere exchanges of water and carbon as well as to infer subsurface structure. These pursuits typical proceed in isolation and rarely do inferences gained from one community propagate to related efforts in another. Perhaps more importantly, vegetation often is treated as an emergent property of landscape-climate interactions rather than an active modifier of both critical zone structure and energy fluxes. We posit that vegetation structure and activity are under utilized as a tool towards understanding landscape evolution and present examples that begin to disentangle the role of vegetation as both an emergent property and an active control on critical zone structure and function. As climate change, population growth, and land use changes threaten water resources worldwide, the need for the new insights vegetation can provide becomes not just a basic science priority, but a pressing applied science question with clear societal importance. This presentation will provide an overview of recent efforts to address the dual role of vegetation in both modifying and reflecting critical zone structure in the western North American forests. For example, interactions between topography and stand scale vegetation structure influence both solar radiation and turbulence altering landscape scale partitioning of evaporation vs transpiration with major impacts of surface water supply. Similarly, interactions between topographic shading, lateral redistribution of plant available water, and subsurface storage create a mosaic of drought resistance and resilience across complex terrain. These complex interactions between geophysical and vegetation components of critical zone structure result in predictable patterns in catchment scale hydrologic partitioning within individual watersheds while simultaneously suggesting testable hypotheses for why catchments under similar climate regimes respond so differently to drought stress.

A 23Na Multiple-Quantum-Filtered NMR Study of the Effect of the Cytoskeleton Conformation on the Anisotropic Motion of Sodium Ions in Red Blood Cells

NASA Astrophysics Data System (ADS)

Knubovets, Tatyana; Shinar, Hadassah; Eliav, Uzi; Navon, Gil

1996-01-01

Recently, it has been shown that23Na double-quantum-filtered NMR spectroscopy can be used to detect anisotropic motion of bound sodium ions in biological systems. The technique is based on the formation of the second-rank tensor when the quadrupolar interaction is not averaged to zero. Using this method, anisotropic motion of bound sodium in human and dog red blood cells was detected, and the effect was shown to depend on the integrity of the membrane cytoskeleton. In the present study, multiple-quantum-filtered techniques were applied in combination with a quadrupolar echo to measure the transverse-relaxation times,T2fandT2s. Line fitting was performed to obtain the values of the residual quadrupolar interaction, which was measured for sodium in a variety of mammalian erythrocytes of different size, shape, rheological properties, and sodium concentrations. Human unsealed white ghosts were used to study sodium bound at the anisotropic sites on the inner side of the RBC membrane. Modulations of the conformation of the cytoskeleton by the variation of either the ionic strength or pH of the suspending medium caused drastic changes in both the residual quadrupolar interaction andT2fdue to changes in the fraction of bound sodium ions as well as changes in the structure of the binding sites. By combining the two spectroscopic parameters, structural change can be followed. The changes in the structure of the sodium anisotropic binding sites deduced by this method were found to correlate with known conformational changes of the membrane cytoskeleton. Variations of the medium pH affected both the fraction of bound sodium ions and the structure of the anisotropic binding sites. Sodium and potassium were shown to bind to the anisotropic binding sites with the same affinity.

Interactions of NO and CO with Pd and Pt atoms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, G.W.; Carter, E.A.

1991-03-21

The authors report ab initio generalized valence bond and correlation-consistent configuration interaction studies of CO and NO interacting with Pd and Pt atoms. They find dramatically different bonding mechanisms for the two ligands, which are easily understood in terms of changes in the electronic structure of the metal and the ligand. CO bonds to both Pd and pt by a {sigma} donor/{pi} back-bonding mechanism, yielding linear geometries. Their calculations predict that the ground ({sup 1}{Sigma}{sup +}) state of PdCO is bound by 27 kcal/mol, while the ground ({sup 1}{Sigma}{sup +}) state of PtCO is bound by only 18.5 kcal/mol. Bymore » contrast, PdNO and PtNO are both bent, with the dominant bonding involving a covalent {sigma} bond between a singly occupied metal d{sigma} orbital and the singly occupied NO 2{pi}* orbital. While the ground ({sup 2}A{prime}) state of PtNO is strongly bound (D{sub e}(Pt-NO) {approximately} 20 kcal/mol), NO binds very weakly to Pd (D{sub e}(Pd-NO) {le} 4 kcal/mol). Linear excited states ({sup 2}{Sigma} and {sup 2}{Pi}) of PtNO and PdNO are predicted to be only weakly bound or unbound. However, corresponding linear cationic states ({sup 1}{Sigma}{sup +} and {sup 3}{Pi}) are strongly bound, but the cationic bent ({sup 1}A{prime}) states are still the ground states of PtNO{sup +} and PdNO{sup +}. These stark contrasts, in which NO binds strongly to Pt but weakly to Pd while CO binds much more strongly to Pd, are due to the preference for closed-shell species to bind strongly to other closed-shell species (e.g., CO to Pd) and for radicals to bind strongly to other radicals (e.g., NO to Pt).« less

Identification of proteins that may directly interact with human RPA.

PubMed

Nakaya, Ryou; Takaya, Junichiro; Onuki, Takeshi; Moritani, Mariko; Nozaki, Naohito; Ishimi, Yukio

2010-11-01

RPA, which consisted of three subunits (RPA1, 2 and 3), plays essential roles in DNA transactions. At the DNA replication forks, RPA binds to single-stranded DNA region to stabilize the structure and to assemble other replication proteins. Interactions between RPA and several replication proteins have been reported but the analysis is not comprehensive. We systematically performed the qualitative analysis to identify RPA interaction partners to understand the protein-protein interaction at the replication forks. We expressed in insect cells the three subunits of human RPA, together with one replication protein, which is present at the forks under normal conditions and/or under the replication stress conditions, to examine the interaction. Among 30 proteins examined in total, it was found that at least 14 proteins interacted with RPA. RPA interacted with MCM3-7, MCM-BP and CDC45 proteins among the proteins that play roles in the initiation and the elongation of the DNA replication. RPA bound with TIPIN, CLASPIN and RAD17, which are involved in the DNA replication checkpoint functions. RPA also bound with cyclin-dependent kinases and an amino-terminal fragment of Rb protein that negatively regulates DNA replication. These results suggest that RPA interacts with the specific proteins among those that play roles in the regulation of the replication fork progression.

Dynamics of continental rift propagation: the end-member modes

NASA Astrophysics Data System (ADS)

Van Wijk, J. W.; Blackman, D. K.

2005-01-01

An important aspect of continental rifting is the progressive variation of deformation style along the rift axis during rift propagation. In regions of rift propagation, specifically transition zones from continental rifting to seafloor spreading, it has been observed that contrasting styles of deformation along the axis of rift propagation are bounded by shear zones. The focus of this numerical modeling study is to look at dynamic processes near the tip of a weak zone in continental lithosphere. More specifically, this study explores how modeled rift behavior depends on the value of rheological parameters of the crust. A three-dimensional finite element model is used to simulate lithosphere deformation in an extensional regime. The chosen approach emphasizes understanding the tectonic forces involved in rift propagation. Dependent on plate strength, two end-member modes are distinguished. The stalled rift phase is characterized by absence of rift propagation for a certain amount of time. Extension beyond the edge of the rift tip is no longer localized but occurs over a very wide zone, which requires a buildup of shear stresses near the rift tip and significant intra-plate deformation. This stage represents a situation in which a rift meets a locked zone. Localized deformation changes to distributed deformation in the locked zone, and the two different deformation styles are balanced by a shear zone oriented perpendicular to the trend. In the alternative rift propagation mode, rift propagation is a continuous process when the initial crust is weak. The extension style does not change significantly along the rift axis and lengthening of the rift zone is not accompanied by a buildup of shear stresses. Model predictions address aspects of previously unexplained rift evolution in the Laptev Sea, and its contrast with the tectonic evolution of, for example, the Gulf of Aden and Woodlark Basin.

Fracture process zone in granite

USGS Publications Warehouse

Zang, A.; Wagner, F.C.; Stanchits, S.; Janssen, C.; Dresen, G.

2000-01-01

In uniaxial compression tests performed on Aue granite cores (diameter 50 mm, length 100 mm), a steel loading plate was used to induce the formation of a discrete shear fracture. A zone of distributed microcracks surrounds the tip of the propagating fracture. This process zone is imaged by locating acoustic emission events using 12 piezoceramic sensors attached to the samples. Propagation velocity of the process zone is varied by using the rate of acoustic emissions to control the applied axial force. The resulting velocities range from 2 mm/s in displacement-controlled tests to 2 ??m/s in tests controlled by acoustic emission rate. Wave velocities and amplitudes are monitored during fault formation. P waves transmitted through the approaching process zone show a drop in amplitude of 26 dB, and ultrasonic velocities are reduced by 10%. The width of the process zone is ???9 times the grain diameter inferred from acoustic data but is only 2 times the grain size from optical crack inspection. The process zone of fast propagating fractures is wider than for slow ones. The density of microcracks and acoustic emissions increases approaching the main fracture. Shear displacement scales linearly with fracture length. Fault plane solutions from acoustic events show similar orientation of nodal planes on both sides of the shear fracture. The ratio of the process zone width to the fault length in Aue granite ranges from 0.01 to 0.1 inferred from crack data and acoustic emissions, respectively. The fracture surface energy is estimated from microstructure analysis to be ???2 J. A lower bound estimate for the energy dissipated by acoustic events is 0.1 J. Copyright 2000 by the American Geophysical Union.

Boulder coastal deposits at Favignana Island rocky coast (Sicily, Italy): Litho-structural and hydrodynamic control

NASA Astrophysics Data System (ADS)

Pepe, Fabrizio; Corradino, Marta; Parrino, Nicolò; Besio, Giovanni; Presti, Valeria Lo; Renda, Pietro; Calcagnile, Lucio; Quarta, Gianluca; Sulli, Attilio; Antonioli, Fabrizio

2018-02-01

Boulders are frequently dislodged from rock platforms, transported and deposited along coastal zones by high-magnitude storm waves or tsunamis. Their size and shape are often controlled by the thickness of bedding planes as well as by high-angle to bedding fracture network. We investigate these processes along two coastal areas of Favignana Island by integrating geological data for 81 boulders, 49 rupture surfaces (called sockets) and fracture orientation and spacing with four radiocarbon dates, numerical hydrodynamic analysis, and hindcast numerical simulation data. Boulders are scattered along the carbonate platform as isolated blocks or in small groups, which form, as a whole, a discontinuous berm. Underwater surveys also highlight free boulders with sharp edges and sockets carved out in the rock platform. Boulders are composed of ruditic- to arenitic-size clastic carbonates. Their size ranges from 0.6 to 3.7 m, 0.55 to 2.4 m, and 0.2 to 1 m on the major (A), medium (B), and minor (C) axes, respectively. The highest value of mass estimation is 12.5 t. Almost all of boulders and sockets are characterized by a tabular or bladed shape. The comparisons between a) the fractures spacing and the length of A- and B-axes, and b) the frequency peaks of C-axis with the recurrent thickness of beds measured along the coastal zone demonstrate the litho-structural control in the size and shape of joint-bounded boulders. These comparisons, together with the similarity between the shapes of the boulders and those of the sockets as well as between the lithology of boulders and the areas surrounding the sockets, suggest that blocks originate by detachment from the platform edge. Thus, the most common pre-transport setting is the joint-bounded scenario. Hydrodynamic equations estimate that the storm wave heights necessary to initiate the transport of blocks diverge from 2 m to 8 m for joint-bounded boulders and from few tens of centimeters up to 11 m for submerged boulders. The comparison between the wave heights at the breaking point of the coastal zones with the results of hydrodynamic equations shows that waves approaching the coastline are able to transport all surveyed boulders. Our data suggest that boulders have been transported by several storm events, even in very recent times.

Crustal structure and inferred extension mode in the northern margin of the South China Sea

NASA Astrophysics Data System (ADS)

Gao, J.; Wu, S.; McIntosh, K. D.; Mi, L.; Spence, G.

2016-12-01

Combining multi-channel seismic reflection and satellite gravity data, this study has investigated the crustal structure and magmatic activities of the northern South China Sea (SCS) margin. Results show that a broad continent-ocean transition zone (COT) with more than 140 km wide is characterized by extensive igneous intrusion/extrusion and hyper-extended continental crust in the northeastern SCS margin, a broader COT with 220-265 km wide is characterized by crustal thinning, rift depression, structural highs with igneous rock and perhaps a volcanic zone or a zone of tilted fault blocks at the distal edge in the mid-northern SCS margin, and a narrow COT with 65 km wide bounded seawards by a volcanic buried seamount is characterized by extremely hyper-extended continental crust in the northwestern SCS margin, where the remnant crust with less than 3 km thick is bounded by basin-bounding faults corresponding to an aborted rift below the Xisha Trough with a sub-parallel fossil ridge in the adjacent Northwest Sub-basin. Results from gravity modeling and seismic refraction data show that a high velocity layer (HVL) is present in the outer shelf and slope below extended continental crust in the eastern portion of the northern SCS margin and is thickest (up to 10 km) in the Dongsha Uplift where the HVL gradually thins to east and west below the lower slope and finally terminates at the Manila Trench and Baiyun sag of the Pearl River Mouth Basin. The magmatic intrusions/extrusions and HVL may be related to partial melting caused by decompression of passive, upwelling asthenosphere which resulted primarily in post-rifting underplating and magmatic emplacement or modification of the crust. The northern SCS margin is closer to those of the magma-poor margins than those of volcanic margins, but the aborted rift near the northwestern continental margin shows that there may be no obvious detachment fault like that in the Iberia-Newfoundland type margin. The symmetric aborted rift, broad hyper-extended continental crust, locally distributed HVL, and hotter mantle materials indicate that continental crust underwent stretching phase (pure-shear deformation), thinning phase and breakup followed by onset of seafloor spreading and the mantle-lithosphere may break up before crustal-necking in the northern South China Sea margin.

Bound-free Spectra for Diatomic Molecules

NASA Technical Reports Server (NTRS)

Schwenke, David W.

2012-01-01

It is now recognized that prediction of radiative heating of entering space craft requires explicit treatment of the radiation field from the infrared (IR) to the vacuum ultra violet (VUV). While at low temperatures and longer wavelengths, molecular radiation is well described by bound-bound transitions, in the short wavelength, high temperature regime, bound-free transitions can play an important role. In this work we describe first principles calculations we have carried out for bound-bound and bound-free transitions in N2, O2, C2, CO, CN, NO, and N2+. Compared to bound ]bound transitions, bound-free transitions have several particularities that make them different to deal with. These include more complicated line shapes and a dependence of emission intensity on both bound state diatomic and atomic concentrations. These will be discussed in detail below. The general procedure we used was the same for all species. The first step is to generate potential energy curves, transition moments, and coupling matrix elements by carrying out ab initio electronic structure calculations. These calculations are expensive, and thus approximations need to be made in order to make the calculations tractable. The only practical method we have to carry out these calculations is the internally contracted multi-reference configuration interaction (icMRCI) method as implemented in the program suite Molpro. This is a widely used method for these kinds of calculations, and is capable of generating very accurate results. With this method, we must first of choose which electrons to correlate, the one-electron basis to use, and then how to generate the molecular orbitals.

Estimating the Spatial Extent of Unsaturated Zones in Heterogeneous River-Aquifer Systems

NASA Astrophysics Data System (ADS)

Schilling, Oliver S.; Irvine, Dylan J.; Hendricks Franssen, Harrie-Jan; Brunner, Philip

2017-12-01

The presence of unsaturated zones at the river-aquifer interface has large implications on numerous hydraulic and chemical processes. However, the hydrological and geological controls that influence the development of unsaturated zones have so far only been analyzed with simplified conceptualizations of flow processes, or homogeneous conceptualizations of the hydraulic conductivity in either the aquifer or the riverbed. We systematically investigated the influence of heterogeneous structures in both the riverbed and the aquifer on the development of unsaturated zones. A stochastic 1-D criterion that takes both riverbed and aquifer heterogeneity into account was developed using a Monte Carlo sampling technique. The approach allows the reliable estimation of the upper bound of the spatial extent of unsaturated areas underneath a riverbed. Through systematic numerical modeling experiments, we furthermore show that horizontal capillary forces can reduce the spatial extent of unsaturated zones under clogged areas. This analysis shows how the spatial structure of clogging layers and aquifers influence the propensity for unsaturated zones to develop: In riverbeds where clogged areas are made up of many small, spatially disconnected patches with a diameter in the order of 1 m, unsaturated areas are less likely to develop compared to riverbeds where large clogged areas exist adjacent to unclogged areas. A combination of the stochastic 1-D criterion with an analysis of the spatial structure of the clogging layers and the potential for resaturation can help develop an appropriate conceptual model and inform the choice of a suitable numerical simulator for river-aquifer systems.

Cenozoic pull-apart basins in southwest Montana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ruppel, E.T.

1991-06-01

Faults and fault zones bounding the mountain ranges of southwest Montana commonly have been described as normal faults, and the region has been considered to be a northern extension of the Basin and Range. New geologic mapping suggests, however, that Cenozoic movements along most of the zones of steep faults in southwest Montana and in east-central Idaho have been strike-slip, and the intermontane basins appear to be pull-aparts. The principal fault zones trend about north, northwest, east, and north-northeast; the north-trending zones are Cenozoic in age, but the others are of Archean ancestry and are rooted in basement rocks. Thesemore » faults break the region into rhomboidal mountain blocks separated by broad basins with parallel sides. The basins are as much as 5,000 m deep, and their floors are deeply indented by centers of subsidence wherre they are crossed by major fault zones. The basins are floored by Archean or Proterozoic rocks and are filled with tuffaceous sedimentary rocks of late Oligocene to late Miocene age. The Big Hole basin and the smaller basins in upper Grasshopper Creek and Horse Prairie are interpreted to be pull-aparts between zones of east-trending right-lateral faults. The cratonic basins farther east in southwest Montana are interpreted to be basement-floored openings between mountain blocks that have been separated by subcrustal flow to the northwest. The interpretations suggest that significant accumulations of oil or gas are not likely to be found in this region.« less

EFFECTS OF LASER RADIATION ON MATTER. LASER PLASMA: Doppler backscattered-signal diagnostics of laser-induced surface hydrodynamic processes

NASA Astrophysics Data System (ADS)

Gordienko, Vyacheslav M.; Kurochkin, Nikolay N.; Markov, V. N.; Panchenko, Vladislav Ya; Pogosov, G. A.; Chastukhin, E. M.

1995-02-01

A method is proposed for on-line monitoring of laser industrial processing. The method is based on optical heterodyne measurements of the Doppler backscattering signal generated in the interaction zone. Qualitative and quantitative information on hydrodynamic flows in the interaction zone can be obtained. A report is given of measurements, carried out at cw CO2 laser radiation intensities up to 1 kW cm-2, on the surfaces of a number of condensed materials irradiated in the monostatic interaction configuration.

The Rényi entropy H2 as a rigorous, measurable lower bound for the entropy of the interaction region in multi-particle production processes

NASA Astrophysics Data System (ADS)

Bialas, A.; Czyz, W.; Zalewski, K.

2006-10-01

A model-independent lower bound on the entropy S of the multi-particle system produced in high energy collisions, provided by the measurable Rényi entropy H2, is shown to be very effective. Estimates show that the ratio H2/S remains close to one half for all realistic values of the parameters.

You can hide but you have to run: direct detection with vector mediators

NASA Astrophysics Data System (ADS)

D'Eramo, Francesco; Kavanagh, Bradley J.; Panci, Paolo

2016-08-01

We study direct detection in simplified models of Dark Matter (DM) in which interactions with Standard Model (SM) fermions are mediated by a heavy vector boson. We consider fully general, gauge-invariant couplings between the SM, the mediator and both scalar and fermion DM. We account for the evolution of the couplings between the energy scale of the mediator mass and the nuclear energy scale. This running arises from virtual effects of SM particles and its inclusion is not optional. We compare bounds on the mediator mass from direct detection experiments with and without accounting for the running. In some cases the inclusion of these effects changes the bounds by several orders of magnitude, as a consequence of operator mixing which generates new interactions at low energy. We also highlight the importance of these effects when translating LHC limits on the mediator mass into bounds on the direct detection cross section. For an axial-vector mediator, the running can alter the derived bounds on the spin-dependent DM-nucleon cross section by a factor of two or more. Finally, we provide tools to facilitate the inclusion of these effects in future studies: general approximate expressions for the low energy couplings and a public code runDM to evolve the couplings between arbitrary energy scales.

Dissociation of branched-chain alpha-keto acid dehydrogenase kinase (BDK) from branched-chain alpha-keto acid dehydrogenase complex (BCKDC) by BDK inhibitors.

PubMed

Murakami, Taro; Matsuo, Masayuki; Shimizu, Ayako; Shimomura, Yoshiharu

2005-02-01

Branched-chain alpha-keto acid dehydrogenase kinase (BDK) phosphorylates and inactivates the branched-chain alpha-keto acid dehydrogenase complex (BCKDC), which is the rate-limiting enzyme in the branched-chain amino acid catabolism. BDK has been believed to be bound to the BCKDC. However, recent our studies demonstrated that protein-protein interaction between BDK and BCKDC is one of the factors to regulate BDK activity. Furthermore, only the bound form of BDK appears to have its activity. In the present study, we examined effects of BDK inhibitors on the amount of BDK bound to the BCKDC using rat liver extracts. The bound form of BDK in the extracts of liver from low protein diet-fed rats was measured by an immunoprecipitation pull down assay with or without BDK inhibitors. Among the BDK inhibitors. alpha-ketoisocaproate, alpha-chloroisocaproate, and a-ketoisovalerate released the BDK from the complex. Furthermore, the releasing effect of these inhibitors on the BDK appeared to depend on their inhibition constants. On the other hand, clofibric acid and thiamine pyrophosphate had no effect on the protein-protein interaction between two enzymes. These results suggest that the dissociation of the BDK from the BCKDC is one of the mechanisms responsible for the action of some inhibitors to BDK.

Hierarchical Cluster Formation in Concentrated Monoclonal Antibody Formulations

NASA Astrophysics Data System (ADS)

Godfrin, P. Douglas; Zarzar, Jonathan; Zarraga, Isidro Dan; Porcar, Lionel; Falus, Peter; Wagner, Norman; Liu, Yun

Reversible cluster formation has been identified as an underlying cause of large solution viscosities observed in some concentrated monoclonal antibody (mAb) formulations. As high solution viscosity prevents the use of subcutaneous injection as a delivery method for some mAbs, a fundamental understanding of the interactions responsible for high viscosities in concentrated mAb solutions is of significant relevance to mAb applications in human health care as well as of intellectual interest. Here, we present a detailed investigation of a well-studied IgG1 based mAb to relate the short time dynamics and microstructure to significant viscosity changes over a range of pharmaceutically relevant physiochemical conditions. Using a combination of experimental techniques, it is found that upon adding Na2SO4, these antibodies dimerize in solution. Proteins form strongly bounded reversible dimers at dilute concentrations that, when concentrated, interact with each other to form loosely bounded, large, transient clusters. The combined effect of forming strongly bounded dimers and a large transient network is a significant increase in the solution viscosity. Strongly bounded, reversible dimers may exist in many IgG1 based mAb systems such that these results contribute to a more comprehensive understanding of the physical mechanisms producing high viscosities in concentrated protein solutions.

Bounds on the power of proofs and advice in general physical theories.

PubMed

Lee, Ciarán M; Hoban, Matty J

2016-06-01

Quantum theory presents us with the tools for computational and communication advantages over classical theory. One approach to uncovering the source of these advantages is to determine how computation and communication power vary as quantum theory is replaced by other operationally defined theories from a broad framework of such theories. Such investigations may reveal some of the key physical features required for powerful computation and communication. In this paper, we investigate how simple physical principles bound the power of two different computational paradigms which combine computation and communication in a non-trivial fashion: computation with advice and interactive proof systems. We show that the existence of non-trivial dynamics in a theory implies a bound on the power of computation with advice. Moreover, we provide an explicit example of a theory with no non-trivial dynamics in which the power of computation with advice is unbounded. Finally, we show that the power of simple interactive proof systems in theories where local measurements suffice for tomography is non-trivially bounded. This result provides a proof that [Formula: see text] is contained in [Formula: see text], which does not make use of any uniquely quantum structure-such as the fact that observables correspond to self-adjoint operators-and thus may be of independent interest.

Heterogeneous Flow of an Extruded granitic dome in the Bronson Hill Terrane, Massachusetts, USA: Evidence for Oblique Convergence and Indentation, and the Alleghanian Orogeny

NASA Astrophysics Data System (ADS)

Massey, M. A.; Moecher, D. P.

2006-12-01

One widely cited model for Appalachian orogenesis in New England invokes the tripartite Alpine sequence of nappe folding/thrusting, back-folding, and doming to explain regional and outcrop-scale structural relationships. Recent work suggests lateral extrusion driven by oblique convergence as an important mechanism responsible for structures, fabrics, and mineral assemblages in the Bronson Hill terrane (BHT) of Connecticut and Massachusetts. Just as the Alpine model has evolved to incorporate elements of lateral extrusion, and syn- to post-orogenic collapse, we propose similar revisions for southern New England. Detailed mapping and structural analysis of the W- to WNW-dipping BHT in south-central MA reveals: (1) a sub-vertical, transpressional dextral thrust high strain zone (Bonemill/Conant Brook shear zone) bounding the eastern margin of the Monson granitic gneiss dome (MG) with two modes of Sil+Qtz+Fs lineations plunging WNW and SSW; (2) a moderate to steeply-dipping sinistral high strain zone bounding the western margin of the MG with WNW- and SSW-plunging Ms+Qtz+Grt lineations; (3) an apparently random arrangement of gneiss, s and s-l tectonites, protomylonites, and mylonites composing the body of the MG, also containing WNW and SSW Qtz+Fs lineations. Extrapolation to a regional scale from central CT to northern MA indicates: (1) a gradual increase in s-l and l-s tectonites to the north from predominantly s-tectonites in central CT; (2) transition of lineation plunge from NW in central CT to bimodal WNW and SSW distribution to the north; (3) amphibolite facies metamorphism was pre- to synkinematic with respect to deformation. We propose that these observations may be accounted for by transpression and extrusion, rather than discreet phases of deformation invoked by the traditional three-stage model. Synchronous operation of high strain zones bounding the MG accommodated northward orogen-parallel extrusion in addition to a component of orogen-normal shortening and sub-vertical extrusion, thus constituting bulk heterogeneous flow. Existing geochronology/thermochronology constrains deformation to the late Paleozoic Alleghanian orogeny. The consistency in timing and similarity in style with deformation associated with the Pelham dome demonstrate the significance of orogen-parallel flow in the BHT. We go further by presenting a working late Paleozoic tectonic model incorporating data from this study with existing contributions from other workers in southern New England. This model involves oblique convergence and underthrusting of Avalon in the late Mississippian/early Pennsylvanian continuing into and throughout most of the Permian. Synorogenic compressional and extensional structures from upper amphibolite to greenschist facies are explained by progressive deformation, including extrusion, orogenic collapse, and wedging, throughout an evolving metamorphic gradient.

Butterfly Density and Behaviour in Uncut Hay Meadow Strips: Behavioural Ecological Consequences of an Agri-Environmental Scheme.

PubMed

Lebeau, Julie; Wesselingh, Renate A; Van Dyck, Hans

2015-01-01

Sparing zones from mowing has been proposed, and applied, to improve local conditions for survival and reproduction of insects in hay meadows. However, little is known about the efficiency of refuge zones and the consequences for local populations. We studied population densities of butterflies before and after mowing in the refuge zone of 15 meadows in 2009 and 2011. We also studied the behaviour of the meadow brown (Maniola jurtina) comparing nectar use, interactions and flights in the refuge zone before and after mowing. Densities of grassland butterflies in this zone doubled on average after mowing. The density of females of M. jurtina increased on average fourfold, while males showed a more modest increase. In line with the idea of increased scramble competition in the refuge zone after mowing, M. jurtina increased the time spent on nectar feeding, the preferred nectar source was visited more frequently, and females made more use of non-preferred nectar sources. Maniola jurtina did not interact more with conspecifics after mowing, but interactions lasted longer. Flight tracks did not change in linearity, but were faster and shorter after mowing. After mowing, only a part of the local grassland butterflies moved to the uncut refuge zone. The resulting concentration effect alters the time allocated to different activities, nectar use and movements. These aspects have been largely ignored for agri-environmental schemes and grassland management in nature reserves and raise questions about optimal quantities and quality of uncut refuge sites for efficient conservation of grassland arthropods in agricultural landscapes.

Butterfly Density and Behaviour in Uncut Hay Meadow Strips: Behavioural Ecological Consequences of an Agri-Environmental Scheme

PubMed Central

Lebeau, Julie; Wesselingh, Renate A.; Van Dyck, Hans

2015-01-01

Sparing zones from mowing has been proposed, and applied, to improve local conditions for survival and reproduction of insects in hay meadows. However, little is known about the efficiency of refuge zones and the consequences for local populations. We studied population densities of butterflies before and after mowing in the refuge zone of 15 meadows in 2009 and 2011. We also studied the behaviour of the meadow brown (Maniola jurtina) comparing nectar use, interactions and flights in the refuge zone before and after mowing. Densities of grassland butterflies in this zone doubled on average after mowing. The density of females of M. jurtina increased on average fourfold, while males showed a more modest increase. In line with the idea of increased scramble competition in the refuge zone after mowing, M. jurtina increased the time spent on nectar feeding, the preferred nectar source was visited more frequently, and females made more use of non-preferred nectar sources. Maniola jurtina did not interact more with conspecifics after mowing, but interactions lasted longer. Flight tracks did not change in linearity, but were faster and shorter after mowing. After mowing, only a part of the local grassland butterflies moved to the uncut refuge zone. The resulting concentration effect alters the time allocated to different activities, nectar use and movements. These aspects have been largely ignored for agri-environmental schemes and grassland management in nature reserves and raise questions about optimal quantities and quality of uncut refuge sites for efficient conservation of grassland arthropods in agricultural landscapes. PMID:26284618

Driver responses to differing urban work zone configurations.

PubMed

Morgan, J F; Duley, A R; Hancock, P A

2010-05-01

This study reports the results of a simulator-based assessment of driver response to two different urban highway work zone configurations. One configuration represented an existing design which was contrasted with a second configuration that presented a reduced taper length prototype work zone design. Twenty-one drivers navigated the two different work zones in two different conditions, one with and one without a lead vehicle; in this case a bus. Measures of driver speed, braking, travel path, and collision frequency were recorded. Drivers navigated significantly closer to the boundary of the work area in the reduced taper length design. This proximity effect was moderated by the significant interaction between lead vehicle and taper length and such interactive effects were also observed for driver speed at the end of the work zone and the number of collisions observed within the work zone itself. These results suggest that reduced taper length poses an increase in risk to both drivers and work zone personnel, primarily when driver anticipation is reduced by foreshortened viewing distances. Increase in such risk is to a degree offset by the reduction of overall exposure to the work zone that a foreshortened taper creates. The benefits and limitations to a simulation-based approach to the assessment and prediction of driver behavior in different work zone configurations are also discussed. Copyright (c) 2009 Elsevier Ltd. All rights reserved.

Interactive Map | USDA Plant Hardiness Zone Map

Science.gov Websites

Choose Basemap: Terrain Road Map Satellite Image Turn on Basemap Roads and Labels Zone Color Transparency menu to switch between Terrain, Road Map, and Satellite Image. Turn on Basemap Roads and Labels Click option is available only for Terrain and Satellite Image basemap choices. Zone Color Transparency The

Apo and Iron Bound Fur Repression and the Role of Fur in vivo

DTIC Science & Technology

2010-03-24

follicles subsequently provide the platform for development of mucosa- 20 associated lymphoid tissue (MALT) in which gastric marginal zone lymphoma can...pylori is able to effectively colonize this niche. One of the tools that H. pylori utilizes to respond to the acidic environment is urease, which is...manner than that of other organisms. H. pylori Fur appears unique in that it also utilizes apo-Fur regulation (18, 66). In this form of regulation

Rainy Lake wrench zone: An example of an Archaean subprovince boundary in northwestern Ontario

NASA Technical Reports Server (NTRS)

Poulsen, K. H.

1986-01-01

The Superior Province of the Canadian Shield comprises an alternation of subprovinces with contrasting lithological, structural and metamorphic styles. Rocks of the Rainly Lake area form a fault bounded wedge between two of these subprovinces, the Wabigoon granite-greenstone terrain to the north and the Quetico metasedimentary terrain to the south. The Quetico and Seine River-Rainy Lake Faults bound this wedge within which interpretation of the stratigraphy has been historically contentious. In the eastern part of the wedge, volcanic rocks and coeval tonalitic sills are unconformably overlain by fluviatile conglomerate and arenite of the Seine Group; in the western part of the wedge, metamorphosed wacke and mudstone of the Coutchiching Group are cut by granodioritic plutons. The Coutchiching Group has previously been correlated with the Seine Group and with the turbiditic Quetico metasediments of the Quetico Subprovince and these correlations are the cornerstone of earlier tectonic models which relate the subprovinces. The structural geology of the Rainy Lake area is characterized by attributes which compare favourably with the known characteristics of dextral wrench or 'transpressive zones based both on experimental data and natural examples. Much of this deformation involved the Seine Group, the youngest stratigraphic unit in the area, and predates the emplacement of late-to-post-tectonic granodioritic plutons for which radiometric data indicate a Late Archean age.