Monte Carlo capabilities of the SCALE code system

DOE PAGES

Rearden, Bradley T.; Petrie, Jr., Lester M.; Peplow, Douglas E.; ...

2014-09-12

SCALE is a broadly used suite of tools for nuclear systems modeling and simulation that provides comprehensive, verified and validated, user-friendly capabilities for criticality safety, reactor physics, radiation shielding, and sensitivity and uncertainty analysis. For more than 30 years, regulators, licensees, and research institutions around the world have used SCALE for nuclear safety analysis and design. SCALE provides a “plug-and-play” framework that includes three deterministic and three Monte Carlo radiation transport solvers that can be selected based on the desired solution, including hybrid deterministic/Monte Carlo simulations. SCALE includes the latest nuclear data libraries for continuous-energy and multigroup radiation transport asmore » well as activation, depletion, and decay calculations. SCALE’s graphical user interfaces assist with accurate system modeling, visualization, and convenient access to desired results. SCALE 6.2 will provide several new capabilities and significant improvements in many existing features, especially with expanded continuous-energy Monte Carlo capabilities for criticality safety, shielding, depletion, and sensitivity and uncertainty analysis. Finally, an overview of the Monte Carlo capabilities of SCALE is provided here, with emphasis on new features for SCALE 6.2.« less

Implications of the IRAS data for galactic gamma ray astronomy and EGRET

NASA Technical Reports Server (NTRS)

Stecker, Floyd W.

1990-01-01

Using the results of gamma-ray, millimeter wave and far surveys of the galaxy, logically consistent picture of the large scale distribution of galactic gas and cosmic rays was derived, tied to the overall processes of stellar birth and destruction on a galactic scale. Using the results of the IRAS far-infrared survey of te galaxy, the large scale radial distributions of galactic far-infrared emission independently was obtained for both the Northern and Southern Hemisphere sides of the Galaxy. The dominant feature in these distributions was found to be a broad peak coincident with the 5 kpc molecular gas cloud ring. Evidence was found for spiral arm features. Strong correlations are evident between the large scale galactic distributions of far-infrared emission, gamma-ray emission and total CO emission. There is particularly tight correlation between the distribution of warm molecular clouds and far-infrared emission on a galactic scale. The 5 kpc ring was evident in existing galactic gamma-ray data. The extent to which the more detailed spiral arm features are evident in the more resolved EGRET (Energetic Gamma-Ray Experimental Telescope) data will help to determine more precisely the propagation characteristics of cosmic rays.

Implications of the IRAS data for galactic gamma-ray astronomy and EGRET

NASA Technical Reports Server (NTRS)

Stecker, F. W.

1990-01-01

Using the results of gamma-ray, millimeter wave and far infrared surveys of the galaxy, one can derive a logically consistent picture of the large scale distribution of galactic gas and cosmic rays, one tied to the overall processes of stellar birth and destruction on a galactic scale. Using the results of the IRAS far-infrared survey of the galaxy, the large scale radial distribution of galactic far-infrared emission were obtained independently for both the Northern and Southern Hemisphere sides of the Galaxy. It was found that the dominant feature in these distributions to be a broad peak coincident with the 5 kpc molecular gas cloud ring. Also found was evidence of spiral arm features. Strong correlations are evident between the large scale galactic distributions of far infrared emission, gamma-ray emission and total CO emission. There is a particularly tight correlation between the distribution of warm molecular clouds and far-infrared emission on a galactic scale.

The Impact of Solid Surface Features on Fluid-Fluid Interface Configuration

NASA Astrophysics Data System (ADS)

Araujo, J. B.; Brusseau, M. L. L.

2017-12-01

Pore-scale fluid processes in geological media are critical for a broad range of applications such as radioactive waste disposal, carbon sequestration, soil moisture distribution, subsurface pollution, land stability, and oil and gas recovery. The continued improvement of high-resolution image acquisition and processing have provided a means to test the usefulness of theoretical models developed to simulate pore-scale fluid processes, through the direct quantification of interfaces. High-resolution synchrotron X-ray microtomography is used in combination with advanced visualization tools to characterize fluid distributions in natural geologic media. The studies revealed the presence of fluid-fluid interface associated with macroscopic features on the surfaces of the solids such as pits and crevices. These features and respective fluid interfaces, which are not included in current theoretical or computational models, may have a significant impact on accurate simulation and understanding of multi-phase flow, energy, heat and mass transfer processes.

HCMM and LANDSAT imagery for geological mapping in northwest Queensland. [Australia

NASA Technical Reports Server (NTRS)

Cole, M. M.; Edmiston, D. J. (Principal Investigator)

1980-01-01

The author has identified the following significant results. Photographic prints made from negatives of day-visible and day-IR cover of selected areas were compared with enhanced color composites generated from LANDSAT computer compatible tapes and films. For geological mapping purposes, HCMM imagery is of limited value. While large scale features like the Mikadoodi anticlinorium, contrasting lithological units, and major structures may be distinguished on day-visible and day-IR cover, the spectral bands are too broad and the resolution too coarse even for regional mapping purposes. The imagery appears to be most useful for drainage studies. Where drainage is seasonal, sequential imagery permits monitoring of broad scale water movement while the day-IR imagery yields valuable information on former channels. In plains areas subject to periodic change of stream courses, comparable IR cover at a larger scale would offer considerable potential for reconstruction of former drainage patterns essential for the correct interpretation of geochemical data relative to mineral exploration.

A novel approach to neutron scattering instrumentation for probing multiscale dynamics in soft and biological matter

DOE PAGES

Mamontov, Eugene

2016-06-29

We present a concept and ray-tracing simulation results of a mechanical device that will enable inelastic neutron scattering measurements where the data at energy transfers from a few eV to several hundred meV can be collected in a single, gapless spectrum. Besides covering 5 orders of magnitude on the energy (time) scale, the device provides data over 2 orders of magnitude on the scattering momentum (length) scale in a single measurement. Such capabilities are geared primarily toward soft and biological matter, where the broad dynamical features of relaxation origin largely overlap with vibration features, thus necessitating gapless spectral coverage overmore » several orders of magnitude in time and space. Furthermore, neutron scattering experiments with such a device are performed with a fixed neutron final energy, which enables measurements, with neutron energy loss in the sample, at arbitrarily low temperatures over the same broad spectral range. Lastly, this capability is also invaluable in biological and soft matter research, as the variable temperature dependence of different relaxation components allows their separation in the scattering spectra as a function of temperature.« less

Pion distribution amplitude from lattice QCD.

PubMed

Cloët, I C; Chang, L; Roberts, C D; Schmidt, S M; Tandy, P C

2013-08-30

A method is explained through which a pointwise accurate approximation to the pion's valence-quark distribution amplitude (PDA) may be obtained from a limited number of moments. In connection with the single nontrivial moment accessible in contemporary simulations of lattice-regularized QCD, the method yields a PDA that is a broad concave function whose pointwise form agrees with that predicted by Dyson-Schwinger equation analyses of the pion. Under leading-order evolution, the PDA remains broad to energy scales in excess of 100 GeV, a feature which signals persistence of the influence of dynamical chiral symmetry breaking. Consequently, the asymptotic distribution φπ(asy)(x) is a poor approximation to the pion's PDA at all such scales that are either currently accessible or foreseeable in experiments on pion elastic and transition form factors. Thus, related expectations based on φ φπ(asy)(x) should be revised.

Use of MAGSAT anomaly data for crustal structure and mineral resources in the US midcontinent

NASA Technical Reports Server (NTRS)

Carmichael, R. S. (Principal Investigator)

1981-01-01

While the preliminary magnetic anomaly map for the centra midcontinent is only in the hand-drawn stage, it agrees in broad aspects with the preliminary global MAGSAT map provided by NASA. Because of data evaluation and finer scale averaging, there are more detailed features which hold promise for eventual geological/crustal interpretation. Some current analysis is directed at examining whether a map data feature such as an elongated anomaly or trend, which seems parallel to satellite data tracks, is likely of crustal origin or is an artifact of the data set.

Movement reveals scale dependence in habitat selection of a large ungulate

USGS Publications Warehouse

Northrup, Joseph; Anderson, Charles R.; Hooten, Mevin B.; Wittemyer, George

2016-01-01

Ecological processes operate across temporal and spatial scales. Anthropogenic disturbances impact these processes, but examinations of scale dependence in impacts are infrequent. Such examinations can provide important insight to wildlife–human interactions and guide management efforts to reduce impacts. We assessed spatiotemporal scale dependence in habitat selection of mule deer (Odocoileus hemionus) in the Piceance Basin of Colorado, USA, an area of ongoing natural gas development. We employed a newly developed animal movement method to assess habitat selection across scales defined using animal-centric spatiotemporal definitions ranging from the local (defined from five hour movements) to the broad (defined from weekly movements). We extended our analysis to examine variation in scale dependence between night and day and assess functional responses in habitat selection patterns relative to the density of anthropogenic features. Mule deer displayed scale invariance in the direction of their response to energy development features, avoiding well pads and the areas closest to roads at all scales, though with increasing strength of avoidance at coarser scales. Deer displayed scale-dependent responses to most other habitat features, including land cover type and habitat edges. Selection differed between night and day at the finest scales, but homogenized as scale increased. Deer displayed functional responses to development, with deer inhabiting the least developed ranges more strongly avoiding development relative to those with more development in their ranges. Energy development was a primary driver of habitat selection patterns in mule deer, structuring their behaviors across all scales examined. Stronger avoidance at coarser scales suggests that deer behaviorally mediated their interaction with development, but only to a degree. At higher development densities than seen in this area, such mediation may not be possible and thus maintenance of sufficient habitat with lower development densities will be a critical best management practice as development expands globally.

Sex differences and within-family associations in the broad autism phenotype.

PubMed

Klusek, Jessica; Losh, Molly; Martin, Gary E

2014-02-01

While there is a strong sex bias in the presentation of autism, it is unknown whether this bias is also present in subclinical manifestations of autism among relatives, or the broad autism phenotype. This study examined this question and investigated patterns of co-occurrence of broad autism phenotype traits within families of individuals with autism. Pragmatic language and personality features of the broad autism phenotype were studied in 42 fathers and 50 mothers of individuals with autism using direct assessment tools used in prior family studies of the broad autism phenotype. Higher rates of aloof personality style were detected among fathers, while no sex differences were detected for other broad autism phenotype traits. Within individuals, pragmatic language features were associated with the social personality styles of the broad autism phenotype in mothers but not in fathers. A number of broad autism phenotype features were correlated within spousal pairs. Finally, the associations were detected between paternal broad autism phenotype characteristics and the severity of children's autism symptoms in all three domains (social, communication, and repetitive behaviors). Mother-child correlations were detected for aspects of communication only. Together, the findings suggest that most features of the broad autism phenotype express comparably in males and females and raise some specific questions about how such features might inform studies of the genetic basis of autism.

Small-Scale Structure in Saturn's Rings

NASA Astrophysics Data System (ADS)

Rehnberg, Morgan

2017-08-01

The rings of Saturn are the largest and most complex in the Solar System. Decades of observation from ground- and space-based observatories and spacecraft missions have revealed the broad structure of the rings and the intricate interactions between the planet's moons and its rings. Stellar occultations observed by the Ultraviolet Imaging Spectrograph's High Speed Photometer onboard the Cassini spacecraft now enable the direct study of the small-scale structure that results from these interactions. In this dissertation, I present three distinct phenomena resulting from the small-scale physics of the rings. Many resonance locations with Saturn's external satellites lie within the main (A and B) rings. Two of these satellites, Janus and Epimetheus, have a unique co-orbital relationship and move radially to switch positions every 4.0 years. This motion also moves the resonance locations within the rings. As the spiral density waves created at these resonances interact, they launch an enormous solitary wave every eight years. I provide the first-ever observations of this never-predicted phenomenon and detail a possible formation mechanism. Previous studies have reported a population of kilometer-scale aggregates in Saturn's F ring, which likely form as a result of self-gravitation between ring particles in Saturn's Roche zone. I expand the known catalog of features in UVIS occultations and provide the first estimates of their density derived from comparisons with the A ring. These features are orders of magnitude less dense than previously believed, a fact which reconciles them with detections made by other means. Theory and indirect observations indicate that the smallest regular structures in the rings are wavelike aggregates called self-gravity wakes. Using the highest-resolution occulta- tions, I provide the first-ever direct detection of these features by identifying the gaps that represent the minima of the wakes. I demonstrate that the distribution of these gaps is con- sistent with the broad brightness asymmetries previously observed in the rings. Furthermore, the presence of spiral density waves affects the formation of self-gravity waves.

Preface: Special Topic on Frontiers in Molecular Scale Electronics

NASA Astrophysics Data System (ADS)

Evers, Ferdinand; Venkataraman, Latha

2017-03-01

The electronic, mechanical, and thermoelectric properties of molecular scale devices have fascinated scientists across several disciplines in natural sciences and engineering. The interest is partially technological, driven by the fast miniaturization of integrated circuits that now have reached characteristic features at the nanometer scale. Equally important, a very strong incentive also exists to elucidate the fundamental aspects of structure-function relations for nanoscale devices, which utilize molecular building blocks as functional units. Thus motivated, a rich research field has established itself, broadly termed "Molecular Electronics," that hosts a plethora of activities devoted to this goal in chemistry, physics, and electrical engineering. This Special Topic on Frontiers of Molecular Scale Electronics captures recent theoretical and experimental advances in the field.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mouterde, Timothée; Lehoucq, Gaëlle; Xavier, Stéphane

Nanometre-scale features with special shapes impart a broad spectrum of unique properties to the surface of insects. These properties are essential for the animal’s survival, and include the low light reflectance of moth eyes, the oil repellency of springtail carapaces and the ultra-adhesive nature of palmtree bugs. Antireflective mosquito eyes and cicada wings are also known to exhibit some antifogging and self-cleaning properties. In all cases, the combination of small feature size and optimal shape provides exceptional surface properties. In this work, we investigate the underlying antifogging mechanism in model materials designed to mimic natural systems, and explain the importancemore » of the texture’s feature size and shape. While exposure to fog strongly compromises the water-repellency of hydrophobic structures, this failure can be minimized by scaling the texture down to nanosize. Furthermore, this undesired effect even becomes non-measurable if the hydrophobic surface consists of nanocones, which generate antifogging efficiency close to unity and water departure of droplets smaller than 2 μm.« less

Antifogging abilities of model nanotextures

DOE PAGES

Mouterde, Timothée; Lehoucq, Gaëlle; Xavier, Stéphane; ...

2017-02-27

Nanometre-scale features with special shapes impart a broad spectrum of unique properties to the surface of insects. These properties are essential for the animal’s survival, and include the low light reflectance of moth eyes, the oil repellency of springtail carapaces and the ultra-adhesive nature of palmtree bugs. Antireflective mosquito eyes and cicada wings are also known to exhibit some antifogging and self-cleaning properties. In all cases, the combination of small feature size and optimal shape provides exceptional surface properties. In this work, we investigate the underlying antifogging mechanism in model materials designed to mimic natural systems, and explain the importancemore » of the texture’s feature size and shape. While exposure to fog strongly compromises the water-repellency of hydrophobic structures, this failure can be minimized by scaling the texture down to nanosize. Furthermore, this undesired effect even becomes non-measurable if the hydrophobic surface consists of nanocones, which generate antifogging efficiency close to unity and water departure of droplets smaller than 2 μm.« less

Antifogging abilities of model nanotextures

NASA Astrophysics Data System (ADS)

Mouterde, Timothée; Lehoucq, Gaëlle; Xavier, Stéphane; Checco, Antonio; Black, Charles T.; Rahman, Atikur; Midavaine, Thierry; Clanet, Christophe; Quéré, David

2017-06-01

Nanometre-scale features with special shapes impart a broad spectrum of unique properties to the surface of insects. These properties are essential for the animal’s survival, and include the low light reflectance of moth eyes, the oil repellency of springtail carapaces and the ultra-adhesive nature of palmtree bugs. Antireflective mosquito eyes and cicada wings are also known to exhibit some antifogging and self-cleaning properties. In all cases, the combination of small feature size and optimal shape provides exceptional surface properties. In this work, we investigate the underlying antifogging mechanism in model materials designed to mimic natural systems, and explain the importance of the texture’s feature size and shape. While exposure to fog strongly compromises the water-repellency of hydrophobic structures, this failure can be minimized by scaling the texture down to nanosize. This undesired effect even becomes non-measurable if the hydrophobic surface consists of nanocones, which generate antifogging efficiency close to unity and water departure of droplets smaller than 2 μm.

Absence of Asymptotic Freedom in Doped Mott Insulators: Breakdown of Strong Coupling Expansions

NASA Astrophysics Data System (ADS)

Phillips, Philip; Galanakis, Dimitrios; Stanescu, Tudor D.

2004-12-01

We show that doped Mott insulators such as the copper-oxide superconductors are asymptotically slaved in that the quasiparticle weight Z near half-filling depends critically on the existence of the high-energy scale set by the upper Hubbard band. In particular, near half-filling, the following dichotomy arises: Z≠0 when the high-energy scale is integrated out but Z=0 in the thermodynamic limit when it is retained. Slavery to the high-energy scale arises from quantum interference between electronic excitations across the Mott gap. Broad spectral features seen in photoemission in the normal state of the cuprates are argued to arise from high-energy slavery.

Broad autism phenotype features of Chinese parents with autistic children and their associations with severity of social impairment in probands.

PubMed

Shi, Li-Juan; Ou, Jian-Jun; Gong, Jing-Bo; Wang, Su-Hong; Zhou, Yuan-Yue; Zhu, Fu-Rong; Liu, Xu-Dong; Zhao, Jing-Ping; Luo, Xue-Rong

2015-07-23

Parents of children with autism have higher rates of broad autism phenotype (BAP) features than parents of typically developing children (TDC) in Western countries. This study was designed to examine the rate of BAP features in parents of children with autism and the relationship between parental BAP and the social impairment of their children in a Chinese sample. A total of 299 families with autistic children and 274 families with TDC participated in this study. Parents were assessed using the Broad Autism Phenotype Questionnaire (BAPQ), which includes self-report, informant-report, and best-estimate versions. Children were assessed using the Chinese version of the Social Responsiveness Scale (SRS). Parents of children with autism were significantly more likely to have BAP features than were parents of TDC; mothers and fathers in families with autistic children had various BAP features. The total scores of the informant and best-estimate BAPQ versions for fathers were significantly associated with their children's SRS total scores in the autism group, whereas the total scores of the three BAPQ versions for mothers were significantly associated with their children's SRS total scores in the TDC group. In the autism group, the total SRS scores of children with "BAP present" parents (informant and best-estimate) were higher than the total SRS scores of children with"BAP absent" parents. In the TDC group, the total SRS scores of children with "BAP present" parents were higher than the total SRS scores of children with"BAP absent" parents (best-estimate). Parents of autistic children were found to have higher rates of BAP than parents of TDC in a sample of Chinese parents. The BAP features of parents are associated with their children's social functioning in both autism families and TDC families, but the patterns of the associations are different.

Evolution and selection of river networks: Statics, dynamics, and complexity

PubMed Central

Rinaldo, Andrea; Rigon, Riccardo; Banavar, Jayanth R.; Maritan, Amos; Rodriguez-Iturbe, Ignacio

2014-01-01

Moving from the exact result that drainage network configurations minimizing total energy dissipation are stationary solutions of the general equation describing landscape evolution, we review the static properties and the dynamic origins of the scale-invariant structure of optimal river patterns. Optimal channel networks (OCNs) are feasible optimal configurations of a spanning network mimicking landscape evolution and network selection through imperfect searches for dynamically accessible states. OCNs are spanning loopless configurations, however, only under precise physical requirements that arise under the constraints imposed by river dynamics—every spanning tree is exactly a local minimum of total energy dissipation. It is remarkable that dynamically accessible configurations, the local optima, stabilize into diverse metastable forms that are nevertheless characterized by universal statistical features. Such universal features explain very well the statistics of, and the linkages among, the scaling features measured for fluvial landforms across a broad range of scales regardless of geology, exposed lithology, vegetation, or climate, and differ significantly from those of the ground state, known exactly. Results are provided on the emergence of criticality through adaptative evolution and on the yet-unexplored range of applications of the OCN concept. PMID:24550264

Venus tectonics: initial analysis from magellan.

PubMed

Solomon, S C; Head, J W; Kaula, W M; McKenzie, D; Parsons, B; Phillips, R J; Schubert, G; Talwani, M

1991-04-12

Radar imaging and altimetry data from the Magellan mission have revealed a diversity of deformational features at a variety of spatial scales on the Venus surface. The plains record a superposition of different episodes of deformation and volcanism; strain is both areally distributed and concentrated into zones of extension and shortening. The common coherence of strain patterns over hundreds of kilometers implies that many features in the plains reflect a crustal response to mantle dynamic processes. Ridge belts and mountain belts represent successive degrees of lithospheric shortening and crustal thickening; the mountain belts also show widespread evidence for extension and collapse both during and following crustal compression. Venus displays two geometrical patterns of concentrated lithospheric extension: quasi-circular coronae and broad rises with linear rift zones; both are sites of significant volcanism. No long, large-offset strike-slip faults have been observed, although limited local horizontal shear is accommodated across many zones of crustal shortening. In general, tectonic features on Venus are unlike those in Earth's oceanic regions in that strain typically is distributed across broad zones that are one to a few hundred kilometers wide, and separated by stronger and less deformed blocks hundreds of kilometers in width, as in actively deforming continental regions on Earth.

Interactions of multi-scale heterogeneity in the lithosphere: Australia

NASA Astrophysics Data System (ADS)

Kennett, B. L. N.; Yoshizawa, K.; Furumura, T.

2017-10-01

Understanding the complex heterogeneity of the continental lithosphere involves a wide variety of spatial scales and the synthesis of multiple classes of information. Seismic surface waves and multiply reflected body waves provide the main constraints on broad-scale structure, and bounds on the extent of the lithosphere-asthenosphere transition (LAT) can be found from the vertical gradients of S wavespeed. Information on finer-scale structures comes through body wave studies, including detailed seismic tomography and P-wave reflectivity extracted from stacked autocorrelograms of continuous component records. With the inclusion of deterministic large-scale structure and realistic medium-scale stochastic features fine-scale variations are subdued. The resulting multi-scale heterogeneity model for the Australian region gives a good representation of the character of observed seismograms and their geographic variations and matches the observations of P-wave reflectivity. P reflections in the 0.5-3.0 Hz band in the uppermost mantle suggest variations on vertical scales of a few hundred metres with amplitudes of the order of 1%. Interference of waves reflected or converted at sequences of such modest variations in physical properties produce relatively simple behaviour for lower frequencies, which can suggest simpler structures than are actually present. Vertical changes in the character of fine-scale heterogeneity can produce apparent discontinuities. In Central Australia a 'mid-lithospheric discontinuity' can be tracked via changes in frequency content of station reflectivity, with links to the broad-scale pattern of wavespeed gradients and, in particular, the gradients of radial anisotropy. Comparisons with xenolith results from southeastern Australia indicate a strong tie between geochemical stratification and P-wave reflectivity.

Science & Technology Review: September 2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vogt, Ramona L.; Meissner, Caryn N.; Chinn, Ken B.

2016-09-30

This is the September issue of the Lawrence Livermore National Laboratory's Science & Technology Review, which communicates, to a broad audience, the Laboratory’s scientific and technological accomplishments in fulfilling its primary missions. This month, there are features on "Laboratory Investments Drive Computational Advances" and "Laying the Groundwork for Extreme-Scale Computing." Research highlights include "Nuclear Data Moves into the 21st Century", "Peering into the Future of Lick Observatory", and "Facility Drives Hydrogen Vehicle Innovations."

Exploration of the canyon-incised continental margin of the northeastern United States reveals dynamic habitats and diverse communities

USGS Publications Warehouse

Quattrini, Andrea; Nizinski, Martha S.; Chaytor, Jason; Demopoulos, Amanda W.J.; Roark, E. Brendan; France, Scott; Moore, Jon A.; Heyl, Taylor P.; Auster, Peter J.; Ruppel, Carolyn D.; Elliott, Kelley P.; Kennedy, Brian R.C.; Lobecker, Elizabeth A.; Skarke, Adam; Shank, Timothy M.

2015-01-01

The continental margin off the northeastern United States (NEUS) contains numerous, topographically complex features that increase habitat heterogeneity across the region. However, the majority of these rugged features have never been surveyed, particularly using direct observations. During summer 2013, 31 Remotely-Operated Vehicle (ROV) dives were conducted from 494 to 3271 m depth across a variety of seafloor features to document communities and to infer geological processes that produced such features. The ROV surveyed six broad-scale habitat features, consisting of shelf-breaching canyons, slope-sourced canyons, inter-canyon areas, open-slope/landslide-scar areas, hydrocarbon seeps, and Mytilus Seamount. Four previously unknown chemosynthetic communities dominated by Bathymodiolus mussels were documented. Seafloor methane hydrate was observed at two seep sites. Multivariate analyses indicated that depth and broad-scale habitat significantly influenced megafaunal coral (58 taxa), demersal fish (69 taxa), and decapod crustacean (34 taxa) assemblages. Species richness of fishes and crustaceans significantly declined with depth, while there was no relationship between coral richness and depth. Turnover in assemblage structure occurred on the middle to lower slope at the approximate boundaries of water masses found previously in the region. Coral species richness was also an important variable explaining variation in fish and crustacean assemblages. Coral diversity may serve as an indicator of habitat suitability and variation in available niche diversity for these taxonomic groups. Our surveys added 24 putative coral species and three fishes to the known regional fauna, including the black coral Telopathes magna, the octocoral Metallogorgia melanotrichosand the fishes Gaidropsarus argentatus, Guttigadus latifrons, and Lepidion guentheri. Marine litter was observed on 81% of the dives, with at least 12 coral colonies entangled in debris. While initial exploration revealed the NEUS region to be both geologically dynamic and biologically diverse, further research into the abiotic conditions and the biotic interactions that influence species abundance and distribution is needed.

Exploration of the Canyon-Incised Continental Margin of the Northeastern United States Reveals Dynamic Habitats and Diverse Communities.

PubMed

Quattrini, Andrea M; Nizinski, Martha S; Chaytor, Jason D; Demopoulos, Amanda W J; Roark, E Brendan; France, Scott C; Moore, Jon A; Heyl, Taylor; Auster, Peter J; Kinlan, Brian; Ruppel, Carolyn; Elliott, Kelley P; Kennedy, Brian R C; Lobecker, Elizabeth; Skarke, Adam; Shank, Timothy M

2015-01-01

The continental margin off the northeastern United States (NEUS) contains numerous, topographically complex features that increase habitat heterogeneity across the region. However, the majority of these rugged features have never been surveyed, particularly using direct observations. During summer 2013, 31 Remotely-Operated Vehicle (ROV) dives were conducted from 494 to 3271 m depth across a variety of seafloor features to document communities and to infer geological processes that produced such features. The ROV surveyed six broad-scale habitat features, consisting of shelf-breaching canyons, slope-sourced canyons, inter-canyon areas, open-slope/landslide-scar areas, hydrocarbon seeps, and Mytilus Seamount. Four previously unknown chemosynthetic communities dominated by Bathymodiolus mussels were documented. Seafloor methane hydrate was observed at two seep sites. Multivariate analyses indicated that depth and broad-scale habitat significantly influenced megafaunal coral (58 taxa), demersal fish (69 taxa), and decapod crustacean (34 taxa) assemblages. Species richness of fishes and crustaceans significantly declined with depth, while there was no relationship between coral richness and depth. Turnover in assemblage structure occurred on the middle to lower slope at the approximate boundaries of water masses found previously in the region. Coral species richness was also an important variable explaining variation in fish and crustacean assemblages. Coral diversity may serve as an indicator of habitat suitability and variation in available niche diversity for these taxonomic groups. Our surveys added 24 putative coral species and three fishes to the known regional fauna, including the black coral Telopathes magna, the octocoral Metallogorgia melanotrichos and the fishes Gaidropsarus argentatus, Guttigadus latifrons, and Lepidion guentheri. Marine litter was observed on 81% of the dives, with at least 12 coral colonies entangled in debris. While initial exploration revealed the NEUS region to be both geologically dynamic and biologically diverse, further research into the abiotic conditions and the biotic interactions that influence species abundance and distribution is needed.

Exploration of the Canyon-Incised Continental Margin of the Northeastern United States Reveals Dynamic Habitats and Diverse Communities

PubMed Central

Quattrini, Andrea M.; Nizinski, Martha S.; Chaytor, Jason D.; Demopoulos, Amanda W. J.; Roark, E. Brendan; France, Scott C.; Moore, Jon A.; Heyl, Taylor; Auster, Peter J.; Kinlan, Brian; Ruppel, Carolyn; Elliott, Kelley P.; Kennedy, Brian R.C.; Lobecker, Elizabeth; Skarke, Adam; Shank, Timothy M.

2015-01-01

The continental margin off the northeastern United States (NEUS) contains numerous, topographically complex features that increase habitat heterogeneity across the region. However, the majority of these rugged features have never been surveyed, particularly using direct observations. During summer 2013, 31 Remotely-Operated Vehicle (ROV) dives were conducted from 494 to 3271 m depth across a variety of seafloor features to document communities and to infer geological processes that produced such features. The ROV surveyed six broad-scale habitat features, consisting of shelf-breaching canyons, slope-sourced canyons, inter-canyon areas, open-slope/landslide-scar areas, hydrocarbon seeps, and Mytilus Seamount. Four previously unknown chemosynthetic communities dominated by Bathymodiolus mussels were documented. Seafloor methane hydrate was observed at two seep sites. Multivariate analyses indicated that depth and broad-scale habitat significantly influenced megafaunal coral (58 taxa), demersal fish (69 taxa), and decapod crustacean (34 taxa) assemblages. Species richness of fishes and crustaceans significantly declined with depth, while there was no relationship between coral richness and depth. Turnover in assemblage structure occurred on the middle to lower slope at the approximate boundaries of water masses found previously in the region. Coral species richness was also an important variable explaining variation in fish and crustacean assemblages. Coral diversity may serve as an indicator of habitat suitability and variation in available niche diversity for these taxonomic groups. Our surveys added 24 putative coral species and three fishes to the known regional fauna, including the black coral Telopathes magna, the octocoral Metallogorgia melanotrichos and the fishes Gaidropsarus argentatus, Guttigadus latifrons, and Lepidion guentheri. Marine litter was observed on 81% of the dives, with at least 12 coral colonies entangled in debris. While initial exploration revealed the NEUS region to be both geologically dynamic and biologically diverse, further research into the abiotic conditions and the biotic interactions that influence species abundance and distribution is needed. PMID:26509818

Theoretical and experimental analysis of the structural pattern responsible for the iridescence of Morpho butterflies.

PubMed

Siddique, Radwanul Hasan; Diewald, Silvia; Leuthold, Juerg; Hölscher, Hendrik

2013-06-17

Morpho butterflies are well-known for their iridescence originating from nanostructures in the scales of their wings. These optical active structures integrate three design principles leading to the wide angle reflection: alternating lamellae layers, "Christmas tree" like shape, and offsets between neighboring ridges. We study their individual effects rigorously by 2D FEM simulations of the nanostructures of the Morpho sulkowskyi butterfly and show how the reflection spectrum can be controlled by the design of the nanostructures. The width of the spectrum is broad (≈ 90 nm) for alternating lamellae layers (or "brunches") of the structure while the "Christmas tree" pattern together with a height offset between neighboring ridges reduces the directionality of the reflectance. Furthermore, we fabricated the simulated structures by e-beam lithography. The resulting samples mimicked all important optical features of the original Morpho butterfly scales and feature the intense blue iridescence with a wide angular range of reflection.

From broadscale patterns to fine-scale processes: habitat structure influences genetic differentiation in the pitcher plant midge across multiple spatial scales.

PubMed

Rasic, Gordana; Keyghobadi, Nusha

2012-01-01

The spatial scale at which samples are collected and analysed influences the inferences that can be drawn from landscape genetic studies. We examined genetic structure and its landscape correlates in the pitcher plant midge, Metriocnemus knabi, an inhabitant of the purple pitcher plant, Sarracenia purpurea, across several spatial scales that are naturally delimited by the midge's habitat (leaf, plant, cluster of plants, bog and system of bogs). We analysed 11 microsatellite loci in 710 M. knabi larvae from two systems of bogs in Algonquin Provincial Park (Canada) and tested the hypotheses that variables related to habitat structure are associated with genetic differentiation in this midge. Up to 54% of variation in individual-based genetic distances at several scales was explained by broadscale landscape variables of bog size, pitcher plant density within bogs and connectivity of pitcher plant clusters. Our results indicate that oviposition behaviour of females at fine scales, as inferred from the spatial locations of full-sib larvae, and spatially limited gene flow at broad scales represent the important processes underlying observed genetic patterns in M. knabi. Broadscale landscape features (bog size and plant density) appear to influence oviposition behaviour of midges, which in turn influences the patterns of genetic differentiation observed at both fine and broad scales. Thus, we inferred linkages among genetic patterns, landscape patterns and ecological processes across spatial scales in M. knabi. Our results reinforce the value of exploring such links simultaneously across multiple spatial scales and landscapes when investigating genetic diversity within a species. © 2011 Blackwell Publishing Ltd.

Pleistocene and ecological effects on continental-scale genetic differentiation in the bobcat (Lynx rufus).

PubMed

Reding, Dawn M; Bronikowski, Anne M; Johnson, Warren E; Clark, William R

2012-06-01

The potential for widespread, mobile species to exhibit genetic structure without clear geographic barriers is a topic of growing interest. Yet the patterns and mechanisms of structure--particularly over broad spatial scales--remain largely unexplored for these species. Bobcats occur across North America and possess many characteristics expected to promote gene flow. To test whether historical, topographic or ecological factors have influenced genetic differentiation in this species, we analysed 1 kb mtDNA sequence and 15 microsatellite loci from over 1700 samples collected across its range. The primary signature in both marker types involved a longitudinal cline with a sharp transition, or suture zone, occurring along the Great Plains. Thus, the data distinguished bobcats in the eastern USA from those in the western half, with no obvious physical barrier to gene flow. Demographic analyses supported a scenario of expansion from separate Pleistocene refugia, with the Great Plains representing a zone of secondary contact. Substructure within the two main lineages likely reflected founder effects, ecological factors, anthropogenic/topographic effects or a combination of these forces. Two prominent topographic features, the Mississippi River and Rocky Mountains, were not supported as significant genetic barriers. Ecological regions and environmental correlates explained a small but significant proportion of genetic variation. Overall, results implicate historical processes as the primary cause of broad-scale genetic differentiation, but contemporary forces seem to also play a role in promoting and maintaining structure. Despite the bobcat's mobility and broad niche, large-scale landscape changes have contributed to significant and complex patterns of genetic structure. © 2012 Blackwell Publishing Ltd.

Large-Scale Topographic Features on Venus: A Comparison by Geological Mapping in Four Quadrangles

NASA Astrophysics Data System (ADS)

Ivanov, M. A.; Head, J. W.

2002-05-01

We have conducted geological mapping in four quadrangles under the NASA program of geological mapping of Venus. Two quadrangles portray large equidimensional lowlands (Lavinia, V55, and Atalanta, V4, Planitiae) and two more areas are characterized by a large corona (Quetzalpetlatl corona, QC, V66), and Lakshmi Planum (LP, V7). Geological mapping of these large-scale features allows for their broad comparisons by both sets of typical structures and sequences of events. The Planitiae share a number of similar characteristics. (1) Lavinia and Atalanta are broad quasi-circular lowlands 1-2 km deep. (2) The central portions of the basins lack both coronae and large volcanoes. (3) The belts of tectonic deformation characterize the central portions of the basins. (4) There is evidence in both lowlands that they subsided predominantly before the emplacement of regional plains. (5) Recent volcanism is shifted toward the periphery of the basins and occurred after or at the late stages the formation of the lowlands. The above characteristics of the lowlands are better reconciled with the scenario in which their formation is due to a broad-scale mantle downwelling that started relatively early in the visible geologic history of Venus. The QC and LP are elevated structures roughly comparable in size. The formation of QC is commonly attributed to large-scale mantle positive diapirism while the formation of LP remains controversial and both mantle upwelling and downwelling models exist. QC and LP have similar characteristics such as broadly circular shape in plan-view, association with regional highlands, associated relatively young volcanism, and a topographic moat bordering both QC and LP from the North. Despite the above similarities, the striking differences between QC and LP are obvious too. LP is crowned by the highest mountain ranges on Venus and QC is bordered from the North by a common belt of ridges. LP itself makes up a regional highland within the upland of Ishtar Terra while QC produces a much less significant topographic anomaly on the background of the highland of Lada Terra. Highly deformed, tessera-like, terrain apparently makes up the basement of LP, and QC formed in the tessera-free area. Volcanic activity is concentrated in the central portion of LP while QC is a regionally important center of young volcanism. These differences, which probably can not be accounted for by simple difference in the size of LP and QC, suggest non-similar modes of the formation of both regional structures and do not favor the upwelling models of the formation of LP.

Movement reveals scale dependence in habitat selection of a large ungulate.

PubMed

Northrup, Joseph M; Anderson, Charles R; Hooten, Mevin B; Wittemyer, George

2016-12-01

Ecological processes operate across temporal and spatial scales. Anthropogenic disturbances impact these processes, but examinations of scale dependence in impacts are infrequent. Such examinations can provide important insight to wildlife-human interactions and guide management efforts to reduce impacts. We assessed spatiotemporal scale dependence in habitat selection of mule deer (Odocoileus hemionus) in the Piceance Basin of Colorado, USA, an area of ongoing natural gas development. We employed a newly developed animal movement method to assess habitat selection across scales defined using animal-centric spatiotemporal definitions ranging from the local (defined from five hour movements) to the broad (defined from weekly movements). We extended our analysis to examine variation in scale dependence between night and day and assess functional responses in habitat selection patterns relative to the density of anthropogenic features. Mule deer displayed scale invariance in the direction of their response to energy development features, avoiding well pads and the areas closest to roads at all scales, though with increasing strength of avoidance at coarser scales. Deer displayed scale-dependent responses to most other habitat features, including land cover type and habitat edges. Selection differed between night and day at the finest scales, but homogenized as scale increased. Deer displayed functional responses to development, with deer inhabiting the least developed ranges more strongly avoiding development relative to those with more development in their ranges. Energy development was a primary driver of habitat selection patterns in mule deer, structuring their behaviors across all scales examined. Stronger avoidance at coarser scales suggests that deer behaviorally mediated their interaction with development, but only to a degree. At higher development densities than seen in this area, such mediation may not be possible and thus maintenance of sufficient habitat with lower development densities will be a critical best management practice as development expands globally. © 2016 by the Ecological Society of America.

Continuous micron-scaled rope engineering using a rotating multi-nozzle electrospinning emitter

NASA Astrophysics Data System (ADS)

Zhang, Chunchen; Gao, Chengcheng; Chang, Ming-Wei; Ahmad, Zeeshan; Li, Jing-Song

2016-10-01

Electrospinning (ES) enables simple production of fibers for broad applications (e.g., biomedical engineering, energy storage, and electronics). However, resulting structures are predominantly random; displaying significant disordered fiber entanglement, which inevitably gives rise to structural variations and reproducibility on the micron scale. Surface and structural features on this scale are critical for biomaterials, tissue engineering, and pharmaceutical sciences. In this letter, a modified ES technique using a rotating multi-nozzle emitter is developed and utilized to fabricate continuous micron-scaled polycaprolactone (PCL) ropes, providing control on fiber intercalation (twist) and structural order. Micron-scaled ropes comprising 312 twists per millimeter are generated, and rope diameter and pitch length are regulated using polymer concentration and process parameters. Electric field simulations confirm vector and distribution mechanisms, which influence fiber orientation and deposition during the process. The modified fabrication system provides much needed control on reproducibility and fiber entanglement which is crucial for electrospun biomedical materials.

Habitat selection in a rocky landscape: experimentally decoupling the influence of retreat site attributes from that of landscape features.

PubMed

Croak, Benjamin M; Pike, David A; Webb, Jonathan K; Shine, Richard

2012-01-01

Organisms selecting retreat sites may evaluate not only the quality of the specific shelter, but also the proximity of that site to resources in the surrounding area. Distinguishing between habitat selection at these two spatial scales is complicated by co-variation among microhabitat factors (i.e., the attributes of individual retreat sites often correlate with their proximity to landscape features). Disentangling this co-variation may facilitate the restoration or conservation of threatened systems. To experimentally examine the role of landscape attributes in determining retreat-site quality for saxicolous ectotherms, we deployed 198 identical artificial rocks in open (sun-exposed) sites on sandstone outcrops in southeastern Australia, and recorded faunal usage of those retreat sites over the next 29 months. Several landscape-scale attributes were associated with occupancy of experimental rocks, but different features were important for different species. For example, endangered broad-headed snakes (Hoplocephalus bungaroides) preferred retreat sites close to cliff edges, flat rock spiders (Hemicloea major) preferred small outcrops, and velvet geckos (Oedura lesueurii) preferred rocks close to the cliff edge with higher-than-average sun exposure. Standardized retreat sites can provide robust experimental data on the effects of landscape-scale attributes on retreat site selection, revealing interspecific divergences among sympatric taxa that use similar habitats.

Modelling turbulent boundary layer flow over fractal-like multiscale terrain using large-eddy simulations and analytical tools.

PubMed

Yang, X I A; Meneveau, C

2017-04-13

In recent years, there has been growing interest in large-eddy simulation (LES) modelling of atmospheric boundary layers interacting with arrays of wind turbines on complex terrain. However, such terrain typically contains geometric features and roughness elements reaching down to small scales that typically cannot be resolved numerically. Thus subgrid-scale models for the unresolved features of the bottom roughness are needed for LES. Such knowledge is also required to model the effects of the ground surface 'underneath' a wind farm. Here we adapt a dynamic approach to determine subgrid-scale roughness parametrizations and apply it for the case of rough surfaces composed of cuboidal elements with broad size distributions, containing many scales. We first investigate the flow response to ground roughness of a few scales. LES with the dynamic roughness model which accounts for the drag of unresolved roughness is shown to provide resolution-independent results for the mean velocity distribution. Moreover, we develop an analytical roughness model that accounts for the sheltering effects of large-scale on small-scale roughness elements. Taking into account the shading effect, constraints from fundamental conservation laws, and assumptions of geometric self-similarity, the analytical roughness model is shown to provide analytical predictions that agree well with roughness parameters determined from LES.This article is part of the themed issue 'Wind energy in complex terrains'. © 2017 The Author(s).

A spreading drop model for plumes on Venus

NASA Astrophysics Data System (ADS)

Koch, D. M.

1994-01-01

Many of the large-scale, plume-related features on Venus can be modeled by a buoyant viscous drop, or plume head, as it rises and spreads laterally below a free fluid surface. The drop has arbitrary density and viscosity contrast and begins as a sphere below the surface of a fluid half space. The boundary integral method is used to solve for the motion of the plume head and for the topography, geoid, and stress at the fluid surface. As the plume approaches the surface, stresses in the fluid above it cause it to spread and become thin below the surface. During the spreading, the surface swell above evolves through various stages whose morphologies resemble several different plume-related features observed on Venus. When the plume head first approaches the surface, a high broad topographic dome develops, with a large geoid, and radial extensional deformation patterns. At later stages, the topography subsides and becomes plateau-like, the geoid to topography ratio (GTR) decreases, and the dominant stress pattern consists of a band of concentric extension surrounded by a band of concentric compression. We find that a low-viscosity model plume head (viscosity that is 0.1 times the mantle viscosity) produces maximum topography that is 20% lower, and swell features which evolve faster, than for an isoviscous plume. We compare model results with both the large-scale highland swells, and smaller-scale features such as coronae and novae. The dome-shaped highlands with large GTRs such as Beta, Atla, and Western Eistla Regiones may be the result of early stage plume motion, while the flatter highlands such as Ovda and Thetis Regiones which have lower GTRs may be later stage features. Comparison of model results with GTR data indicates that the highlands result from plume heads with initial diameters of about 1000 km. On a smaller scale, an evolutionary sequence may begin with novae (domes having radial extensional deformation), followed by features with radial and concentric deformation (such as arachnoids), and end with coronae (with mostly concentric deformation). The model predicts that the highlands evolve on a timescale of order 10 Ma, and the smaller-scale features evolve in a 100 Ma timescale.

A Broad 22 Micron Emission Feature in the Carina Nebula H ii Region.

PubMed

Chan; Onaka

2000-04-10

We report the detection of a broad 22 µm emission feature in the Carina Nebula H ii region by the Infrared Space Observatory (ISO) short-wavelength spectrometer. The feature shape is similar to that of the 22 µm emission feature of newly synthesized dust observed in the Cassiopeia A supernova remnant. This finding suggests that both of the features are arising from the same carrier and that supernovae are probably the dominant production sources of this new interstellar grain. A similar broad emission dust feature is also found in the spectra of two starburst galaxies from the ISO archival data. This new dust grain could be an abundant component of interstellar grains and can be used to trace the supernova rate or star formation rate in external galaxies. The existence of the broad 22 µm emission feature complicates the dust model for starburst galaxies and must be taken into account correctly in the derivation of dust color temperature. Mg protosilicate has been suggested as the carrier of the 22 µm emission dust feature observed in Cassiopeia A. The present results provide useful information in studies on the chemical composition and emission mechanism of the carrier.

Psychopathy and interests: Implications of psychopathic personality traits for vocational and avocational preferences.

PubMed

Nagel, Madeline G; Watts, Ashley L; Murphy, Brett A; Lilienfeld, Scott O

2018-06-21

General personality traits and interests, both vocational and avocational, have long been considered intertwined constructs. Nevertheless, the linkages between personality disorder features, such as psychopathy, and interests are poorly understood. This study bridges this gap by examining how psychopathic traits relate to vocational and avocational interests, and to what extent these associations are distinctive to psychopathy as opposed to a broader pattern of general and abnormal personality traits. In a sample of 426 community participants, Psychopathic Personality Inventory-Revised Fearless Dominance features of psychopathy were associated with interest in a broad swath of vocational and avocational interests, whereas Self-Centered Impulsivity features were associated with realistic, artistic, enterprising, and conventional interests; most zero-order associations were in the small to medium range. Coldheartedness and the factors derived from the Levenson Self-Report Psychopathy Scale were largely unrelated to interests, although there were several notable exceptions. Narcissistic traits, as well as HEXACO (Honesty-Humility, Emotionality, Extraversion, Agreeableness, Conscientiousness, and Openness) Honesty-Humility, Extraversion, and Openness to Experience, were also related broadly to interests. The patterns of interests associated with personality disorder traits may ultimately bear practical implications for interventions as individuals seek out positions or hobbies that suit their traits. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

Global geomorphology: Report of Working Group Number 1

NASA Technical Reports Server (NTRS)

Douglas, I.

1985-01-01

Remote sensing was considered invaluable for seeing landforms in their regional context and in relationship to each other. Sequential images, such as those available from LANDSAT orbits provide a means of detecting landform change and the operation of large scale processes, such as major floods in semiarid regions. The use of remote sensing falls into two broad stages: (1) the characterization or accurate description of the features of the Earth's surface; and (2) the study of landform evolution. Recommendations for future research are made.

Assessment of habitat representation across a network of marine protected areas with implications for the spatial design of monitoring.

PubMed

Young, Mary; Carr, Mark

2015-01-01

Networks of marine protected areas (MPAs) are being adopted globally to protect ecosystems and supplement fisheries management. The state of California recently implemented a coast-wide network of MPAs, a statewide seafloor mapping program, and ecological characterizations of species and ecosystems targeted for protection by the network. The main goals of this study were to use these data to evaluate how well seafloor features, as proxies for habitats, are represented and replicated across an MPA network and how well ecological surveys representatively sampled fish habitats inside MPAs and adjacent reference sites. Seafloor data were classified into broad substrate categories (rock and sediment) and finer scale geomorphic classifications standard to marine classification schemes using surface analyses (slope, ruggedness, etc.) done on the digital elevation model derived from multibeam bathymetry data. These classifications were then used to evaluate the representation and replication of seafloor structure within the MPAs and across the ecological surveys. Both the broad substrate categories and the finer scale geomorphic features were proportionately represented for many of the classes with deviations of 1-6% and 0-7%, respectively. Within MPAs, however, representation of seafloor features differed markedly from original estimates, with differences ranging up to 28%. Seafloor structure in the biological monitoring design had mismatches between sampling in the MPAs and their corresponding reference sites and some seafloor structure classes were missed entirely. The geomorphic variables derived from multibeam bathymetry data for these analyses are known determinants of the distribution and abundance of marine species and for coastal marine biodiversity. Thus, analyses like those performed in this study can be a valuable initial method of evaluating and predicting the conservation value of MPAs across a regional network.

Assessment of Habitat Representation across a Network of Marine Protected Areas with Implications for the Spatial Design of Monitoring

PubMed Central

Young, Mary; Carr, Mark

2015-01-01

Networks of marine protected areas (MPAs) are being adopted globally to protect ecosystems and supplement fisheries management. The state of California recently implemented a coast-wide network of MPAs, a statewide seafloor mapping program, and ecological characterizations of species and ecosystems targeted for protection by the network. The main goals of this study were to use these data to evaluate how well seafloor features, as proxies for habitats, are represented and replicated across an MPA network and how well ecological surveys representatively sampled fish habitats inside MPAs and adjacent reference sites. Seafloor data were classified into broad substrate categories (rock and sediment) and finer scale geomorphic classifications standard to marine classification schemes using surface analyses (slope, ruggedness, etc.) done on the digital elevation model derived from multibeam bathymetry data. These classifications were then used to evaluate the representation and replication of seafloor structure within the MPAs and across the ecological surveys. Both the broad substrate categories and the finer scale geomorphic features were proportionately represented for many of the classes with deviations of 1-6% and 0-7%, respectively. Within MPAs, however, representation of seafloor features differed markedly from original estimates, with differences ranging up to 28%. Seafloor structure in the biological monitoring design had mismatches between sampling in the MPAs and their corresponding reference sites and some seafloor structure classes were missed entirely. The geomorphic variables derived from multibeam bathymetry data for these analyses are known determinants of the distribution and abundance of marine species and for coastal marine biodiversity. Thus, analyses like those performed in this study can be a valuable initial method of evaluating and predicting the conservation value of MPAs across a regional network. PMID:25760858

Origin of the Hadži ABC structure: An ab initio study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Hoozen, Brian L.; Petersen, Poul B.

2015-11-14

Medium and strong hydrogen bonds are well known to give rise to broad features in the vibrational spectrum often spanning several hundred wavenumbers. In some cases, these features can span over 1000 cm{sup −1} and even contain multiple broad peaks. One class of strongly hydrogen-bonded dimers that includes many different phosphinic, phosphoric, sulfinic, and selenic acid homodimers exhibits a three-peaked structure over 1500 cm{sup −1} broad. This unusual feature is often referred to as the Hadži ABC structure. The origin of this feature has been debated since its discovery in the 1950s. Only a couple of theoretical studies have attemptedmore » to interpret the origin of this feature; however, no previous study has been able to reproduce this feature from first principles. Here, we present the first ab initio calculation of the Hadži ABC structure. Using a reduced dimensionality calculation that includes four vibrational modes, we are able to reproduce the three-peak structure and much of the broadness of the feature. Our results indicate that Fermi resonances of the in-plane bend, out-of-plane bend, and combination of these bends play significant roles in explaining this feature. Much of the broadness of the feature and the ability of the OH stretch mode to couple with many overtone bending modes are captured by including an adiabatically separated dimer stretch mode in the model. This mode modulates the distance between the monomer units and accordingly the strength of the hydrogen-bonds causing the OH stretch frequency to shift from 2000 to 3000 cm{sup −1}. Using this model, we were also able to reproduce the vibrational spectrum of the deuterated isotopologue which consists of a single 500 cm{sup −1} broad feature. Whereas previous empirical studies have asserted that Fermi resonances contribute very little to this feature, our study indicates that while not appearing as a separate peak, a Fermi resonance of the in-plane bend contributes substantially to the feature.« less

Pluto: Pits and mantles on uplands north and east of Sputnik Planitia

NASA Astrophysics Data System (ADS)

Howard, Alan D.; Moore, Jeffrey M.; White, Oliver L.; Umurhan, Orkan M.; Schenk, Paul M.; Grundy, William M.; Schmitt, Bernard; Philippe, Sylvain; McKinnon, William B.; Spencer, John R.; Beyer, Ross A.; Stern, S. Alan; Ennico, Kimberly; Olkin, Cathy B.; Weaver, Harold A.; Young, Leslie A.; New Horizons Science Team

2017-09-01

The highlands region north and east of Sputnik Planitia can be subdivided into seven terrain types based on their physiographic expression. The northern rough uplands are characterized by jagged uplands and broad troughs, and it may contain a deeply-eroded ancient mantle. Dissected terrain has been interpreted to have been eroded by paleo-glaciation. The smooth uplands and pits terrain contains broad, rolling uplands surrounding complexes of pits, some of which contain smooth floors. The uplands are mantled by smooth-surfaced deposits possibly derived from adjacent pits through low-power explosive cryovolcanism or through slow vapor condensation. The eroded smooth uplands appear to have originally been smooth uplands and pits terrain modified by small-scale sublimation pitting. The bright pitted uplands features intricate texturing by reticulate ridges that may have originated by sublimation erosion, volatile condensation, or both. The bladed terrain is characterized by parallel ridges oriented north-south and is discussed in a separate paper. The dark uplands are mantled with reddish deposits that may be atmospherically deposited tholins. Their presence has affected long-term landform evolution. Widespread pit complexes occur on most of the terrain units. Most appear to be associated with tectonic lineations. Some pits are floored by broad expanses of ices, whereas most feature deep, conical depressions. A few pit complexes are enclosed by elevated rims of uncertain origin.

Fluctuations of global energy release and crackling in nominally brittle heterogeneous fracture.

PubMed

Barés, J; Hattali, M L; Dalmas, D; Bonamy, D

2014-12-31

The temporal evolution of mechanical energy and spatially averaged crack speed are both monitored in slowly fracturing artificial rocks. Both signals display an irregular burstlike dynamics, with power-law distributed fluctuations spanning a broad range of scales. Yet, the elastic power released at each time step is proportional to the global velocity all along the process, which enables defining a material-constant fracture energy. We characterize the intermittent dynamics by computing the burst statistics. This latter displays the scale-free features signature of crackling dynamics, in qualitative but not quantitative agreement with the depinning interface models derived for fracture problems. The possible sources of discrepancies are pointed out and discussed.

Modeling ramp-hold indentation measurements based on Kelvin-Voigt fractional derivative model

NASA Astrophysics Data System (ADS)

Zhang, Hongmei; zhe Zhang, Qing; Ruan, Litao; Duan, Junbo; Wan, Mingxi; Insana, Michael F.

2018-03-01

Interpretation of experimental data from micro- and nano-scale indentation testing is highly dependent on the constitutive model selected to relate measurements to mechanical properties. The Kelvin-Voigt fractional derivative model (KVFD) offers a compact set of viscoelastic features appropriate for characterizing soft biological materials. This paper provides a set of KVFD solutions for converting indentation testing data acquired for different geometries and scales into viscoelastic properties of soft materials. These solutions, which are mostly in closed-form, apply to ramp-hold relaxation, load-unload and ramp-load creep-testing protocols. We report on applications of these model solutions to macro- and nano-indentation testing of hydrogels, gastric cancer cells and ex vivo breast tissue samples using an atomic force microscope (AFM). We also applied KVFD models to clinical ultrasonic breast data using a compression plate as required for elasticity imaging. Together the results show that KVFD models fit a broad range of experimental data with a correlation coefficient typically R 2  >  0.99. For hydrogel samples, estimation of KVFD model parameters from test data using spherical indentation versus plate compression as well as ramp relaxation versus load-unload compression all agree within one standard deviation. Results from measurements made using macro- and nano-scale indentation agree in trend. For gastric cell and ex vivo breast tissue measurements, KVFD moduli are, respectively, 1/3-1/2 and 1/6 of the elasticity modulus found from the Sneddon model. In vivo breast tissue measurements yield model parameters consistent with literature results. The consistency of results found for a broad range of experimental parameters suggest the KVFD model is a reliable tool for exploring intrinsic features of the cell/tissue microenvironments.

Comparative study of feature selection with ensemble learning using SOM variants

NASA Astrophysics Data System (ADS)

Filali, Ameni; Jlassi, Chiraz; Arous, Najet

2017-03-01

Ensemble learning has succeeded in the growth of stability and clustering accuracy, but their runtime prohibits them from scaling up to real-world applications. This study deals the problem of selecting a subset of the most pertinent features for every cluster from a dataset. The proposed method is another extension of the Random Forests approach using self-organizing maps (SOM) variants to unlabeled data that estimates the out-of-bag feature importance from a set of partitions. Every partition is created using a various bootstrap sample and a random subset of the features. Then, we show that the process internal estimates are used to measure variable pertinence in Random Forests are also applicable to feature selection in unsupervised learning. This approach aims to the dimensionality reduction, visualization and cluster characterization at the same time. Hence, we provide empirical results on nineteen benchmark data sets indicating that RFS can lead to significant improvement in terms of clustering accuracy, over several state-of-the-art unsupervised methods, with a very limited subset of features. The approach proves promise to treat with very broad domains.

Image Discrimination Models With Stochastic Channel Selection

NASA Technical Reports Server (NTRS)

Ahumada, Albert J., Jr.; Beard, Bettina L.; Null, Cynthia H. (Technical Monitor)

1995-01-01

Many models of human image processing feature a large fixed number of channels representing cortical units varying in spatial position (visual field direction and eccentricity) and spatial frequency (radial frequency and orientation). The values of these parameters are usually sampled at fixed values selected to ensure adequate overlap considering the bandwidth and/or spread parameters, which are usually fixed. Even high levels of overlap does not always ensure that the performance of the model will vary smoothly with image translation or scale changes. Physiological measurements of bandwidth and/or spread parameters result in a broad distribution of estimated parameter values and the prediction of some psychophysical results are facilitated by the assumption that these parameters also take on a range of values. Selecting a sample of channels from a continuum of channels rather than using a fixed set can make model performance vary smoothly with changes in image position, scale, and orientation. It also facilitates the addition of spatial inhomogeneity, nonlinear feature channels, and focus of attention to channel models.

M dwarf spectra from 0.6 to 1.5 micron - A spectral sequence, model atmosphere fitting, and the temperature scale

NASA Technical Reports Server (NTRS)

Kirkpatrick, J. D.; Kelly, Douglas M.; Rieke, George H.; Liebert, James; Allard, France; Wehrse, Rainer

1993-01-01

Red/infrared (0.6-1.5 micron) spectra are presented for a sequence of well-studied M dwarfs ranging from M2 through M9. A variety of temperature-sensitive features useful for spectral classification are identified. Using these features, the spectral data are compared to recent theoretical models, from which a temperature scale is assigned. The red portion of the model spectra provide reasonably good fits for dwarfs earlier than M6. For layer types, the infrared region provides a more reliable fit to the observations. In each case, the wavelength region used includes the broad peak of the energy distribution. For a given spectral type, the derived temperature sequence assigns higher temperatures than have earlier studies - the difference becoming more pronounced at lower luminosities. The positions of M dwarfs on the H-R diagram are, as a result, in closer agreement with theoretical tracks of the lower main sequence.

Examples of landscape indicators for assessing environmental conditions and problems in urban and suburban areas

USGS Publications Warehouse

Martin-Duque, J. F.; Godfrey, A.; Diez, A.; Cleaves, E.; Pedraza, J.; Sanz, M.A.; Carrasco, R.M.; Bodoque, J.; Brebbia, C.A.; Martin-Duque, J.F.; Wadhwa, L.C.

2002-01-01

Geo-indicators can help to assess environmental conditions in city urban and suburban areas. Those indicators should be meaningful for understanding environmental changes. From examples of Spanish and American cities, geo-indicators for assessing environmental conditions and changes in urban and suburban areas are proposed. The paper explore two types of geo-indicators. The first type presents general information that can be used to indicate the presence of a broad array of geologic conditions, either favouring or limiting various kinds of uses of the land. The second type of geo-indicator is the one most commonly used, and as a group most easily understood; these are site and problem specific and they are generally used after a problem is identified. Among them, watershed processes, seismicity and physiographic diversity are explained in more detail. A second dimension that is considered when discussing geo-indicators is the issue of scale. Broad scale investigations, covering extensive areas are only efficient at cataloguing general conditions common to much of the area or some outstanding feature within the area. This type of information is best used for policy type decisions. Detailed scale investigations can provide information about local conditions, but are not efficient at cataloguing vast areas. Information gathered at the detailed level is necessary for project design and construction.

Inherited Fe and Ti electron transition spectroscopic features in altered ultramafic-carbonatite intrusives

NASA Astrophysics Data System (ADS)

Shavers, E. J.; Ghulam, A.; Encarnacion, J. P.

2016-12-01

Spectroscopic reflectance in the visible to short-wave infrared region is an important tool for remote geologic mapping and is applied at scales from satellite to field measurements. Remote geologic mapping is challenging in regions subject to significant surficial weathering. Here we identify absorption features found in altered volcanic pipes and dikes in the Avon Volcanic District, Missouri, that are inherited from the original ultramafic and carbonatite lithology. Alteration ranges from small degree hydrothermal alteration to extensive laterization. The absorption features are three broad minima centered near 690, 890, and 1100 nm. Features in this region are recognized to be caused by ferric and ferrous Fe minerals including olivine, carbonates, chlorite, and goethite all of which are found among the Avon pipes and dikes that are in various stages of alteration. Iron-related intervalence charge transfer and crystal field perturbations of ions are the principal causes of the spectroscopic features in the visible to near-infrared region yet spectra are also distorted by factors like texture and the presence of opaque minerals known to reduce overall reflectance. In the Avon samples, Fe oxide content can reach >15 wt% leading to prominent absorption features even in the less altered ultramafics with reflectance curve maxima as low as 5%. The exaggerated minima allow the altered intrusive rocks to stand out among other weathered lithologies that will often have clay features in the region yet have lower iron concentration. The absorption feature centered near 690 nm is particularly noteworthy. Broad mineral-related absorption features centered at this wavelength are rare but have been linked to Ti3+ in octahedral coordination. The reduced form of Ti is not common in surface lithologies. Titanium-rich andradite has Ti3+ in the octahedral position, is resistant to weathering, is found among the Avon lithologies including ultramafic, carbonatite, and carbonated breccia, and is identified here as the cause of the 690 nm absorption feature. The Ti3+ absorption feature centered near 690 nm and strong Fe absorption features at 890 and 1100 nm may be useful indicators of rare intrusive lithologies in remote geologic mapping.

An efficient approach to imaging underground hydraulic networks

NASA Astrophysics Data System (ADS)

Kumar, Mohi

2012-07-01

To better locate natural resources, treat pollution, and monitor underground networks associated with geothermal plants, nuclear waste repositories, and carbon dioxide sequestration sites, scientists need to be able to accurately characterize and image fluid seepage pathways below ground. With these images, scientists can gain knowledge of soil moisture content, the porosity of geologic formations, concentrations and locations of dissolved pollutants, and the locations of oil fields or buried liquid contaminants. Creating images of the unknown hydraulic environments underfoot is a difficult task that has typically relied on broad extrapolations from characteristics and tests of rock units penetrated by sparsely positioned boreholes. Such methods, however, cannot identify small-scale features and are very expensive to reproduce over a broad area. Further, the techniques through which information is extrapolated rely on clunky and mathematically complex statistical approaches requiring large amounts of computational power.

Geophysical identification and geological Implications of the Southern Alaska Magnetic Trough

USGS Publications Warehouse

Saltus, R.W.; Hudson, T.L.; Wilson, Frederic H.

2003-01-01

The southern Alaska magnetic trough (SAMT) is one of the fundamental, crustal-scale, magnetic features of Alaska. It is readily recognized on 10 km upward-continued aeromagnetic maps of the state. The arcuate SAMT ranges from 30 to 100 km wide and extends in two separate segments along the southern Alaska margin for about 1200 km onshore (from near the Alaska/Canada border at about 60 degrees north latitude to the Bering Sea) and may continue an additional 500 km or more offshore (in the southern Bering Sea). The SAMT is bordered to the south by the southern Alaska magnetic high (SAMH) produced by strongly magnetic crust and to the north by a magnetically quiet zone that reflects weakly magnetic interior Alaska crust. Geophysically, the SAMT is more than just the north-side dipole low associated with the SAMH. Several modes of analysis, including examination of magnetic potential (pseudogravity) and profile modeling, indicate that the source of this magnetic trough is a discrete, crustal-scale body. Geologically, the western portion of the SAMT coincides to a large degree with collapsed Mesozoic Kahiltna flysch basin. This poster presents our geophysical evidence for the extent and geometry of this magnetic feature as well as initial geological synthesis and combined geologic/geophysical modeling to examine the implications of this feature for the broad scale tectonic framework of southern Alaska.

Summary of space imagery studies in Utah and Nevada. [using LANDSAT 1, EREP, and Skylab imagery

NASA Technical Reports Server (NTRS)

Jensen, M. L.; Laylander, P.

1975-01-01

LANDSAT-1, Skylab, and RB-57 imagery acquired within days of each other of the San Rafael swell enabled geological mapping of individual formations of the southern portion of this broad anticlinal feature in eastern Utah. Mapping at a scale of 1/250,000 on an enhanced and enlarged S-190B image resulted in a geological map showing correlative mappable features that are indicated on the geological map of Utah at the same scale. An enhanced enlargement of an S-190B color image at a scale of 1/19,200 of the Bingham Porphyry Copper deposit allowed comparison of a geological map of the area with the space imagery map as fair for the intrusion boundaries and total lack of quality for mapping the sediments. Hydrothermal alteration is only slightly evident on space imagery at Bingham but in the Tintic mining district and the volcanic piles of the Keg and Thomas ranges, Utah, hydrothermal alteration is readily mapped on color enlargements of S-190B (SL-3, T3-3N Tr-2). A mercury soil-gas analyzer was developed for locating hidden mineralized zones which were suggested from space imagery.

Injectable, cellular-scale optoelectronics with applications for wireless optogenetics.

PubMed

Kim, Tae-il; McCall, Jordan G; Jung, Yei Hwan; Huang, Xian; Siuda, Edward R; Li, Yuhang; Song, Jizhou; Song, Young Min; Pao, Hsuan An; Kim, Rak-Hwan; Lu, Chaofeng; Lee, Sung Dan; Song, Il-Sun; Shin, Gunchul; Al-Hasani, Ream; Kim, Stanley; Tan, Meng Peun; Huang, Yonggang; Omenetto, Fiorenzo G; Rogers, John A; Bruchas, Michael R

2013-04-12

Successful integration of advanced semiconductor devices with biological systems will accelerate basic scientific discoveries and their translation into clinical technologies. In neuroscience generally, and in optogenetics in particular, the ability to insert light sources, detectors, sensors, and other components into precise locations of the deep brain yields versatile and important capabilities. Here, we introduce an injectable class of cellular-scale optoelectronics that offers such features, with examples of unmatched operational modes in optogenetics, including completely wireless and programmed complex behavioral control over freely moving animals. The ability of these ultrathin, mechanically compliant, biocompatible devices to afford minimally invasive operation in the soft tissues of the mammalian brain foreshadow applications in other organ systems, with potential for broad utility in biomedical science and engineering.

Australian Seismological Reference Model (AuSREM): crustal component

NASA Astrophysics Data System (ADS)

Salmon, M.; Kennett, B. L. N.; Saygin, E.

2013-01-01

Although Australia has been the subject of a wide range of seismological studies, these have concentrated on specific features of the continent at crustal scales and on the broad scale features in the mantle. The Australian Seismological Reference Model (AuSREM) is designed to bring together the existing information, and provide a synthesis in the form of a 3-D model that can provide the basis for future refinement from more detailed studies. Extensive studies in the last few decades provide good coverage for much of the continent, and the crustal model builds on the various data sources to produce a representative model that captures the major features of the continental structure and provides a basis for a broad range of further studies. The model is grid based with a 0.5° sampling in latitude and longitude, and is designed to be fully interpolable, so that properties can be extracted at any point. The crustal structure is built from five-layer representations of refraction and receiver function studies and tomographic information. The AuSREM crustal model is available at 1 km intervals. The crustal component makes use of prior compilations of sediment thicknesses, with cross checks against recent reflection profiling, and provides P and S wavespeed distributions through the crust. The primary information for P wavespeed comes from refraction profiles, for S wavespeed from receiver function studies. We are also able to use the results of ambient noise tomography to link the point observations into national coverage. Density values are derived using results from gravity interpretations with an empirical relation between P wavespeed and density. AuSREM is able to build on a new map of depth to Moho, which has been created using all available information including Moho picks from over 12 000 km of full crustal profiling across the continent. The crustal component of AuSREM provides a representative model that should be useful for modelling of seismic wave propagation and calculation of crustal corrections for tomography. Other applications include gravity studies and dynamic topography at the continental scale.

The interaction of the halo around the butterfly planetary nebula NGC 650-1 with the interstellar medium

NASA Astrophysics Data System (ADS)

Ramos-Larios, G.; Guerrero, M. A.; Nigoche-Netro, A.; Olguín, L.; Gómez-Muñoz, M. A.; Sabin, L.; Vázquez, R.; Akras, S.; Ramírez Vélez, J. C.; Chávez, M.

2018-03-01

With its bright and wide equatorial waist seen almost edge-on (`the butterfly body') and the faint and broad bipolar extensions (`the butterfly wings'), NGC 650-1 is the archetypical example of bipolar planetary nebula (PN) with butterfly morphology. We present here deep high-resolution broad- and narrow-band optical images that expose the rich and intricate fine structure of this bipolar PN, with small-scale bubble-like features and collimated outflows. A SHAPE spatio-kinematic model indicates that NGC 650-1 has a broad central torus with an inclination angle of 75° with respect to the line of sight, whereas that of the bipolar lobes, which are clearly seen in the position-velocity maps, is 85°. Large field of view deep images show, for first time, an arc-like diffuse envelope in low- and high-excitation emission lines located up to 180 arcsec towards the east-south-east of the central star, well outside the main nebula. This morphological component is confirmed by Spitzer MIPS and WISE infrared imaging, as well as by long-slit low- and high-dispersion optical spectroscopic observations. Hubble Space Telescope images of NGC 650-1 obtained at two different epochs ˜14 yr apart reveal the proper motion of the central star along this direction. We propose that this motion of the star through the interstellar medium compresses the remnant material of a slow asymptotic giant branch wind, producing this bow-shock-like feature.

A Compendium of Scale Surface Microstructures: Ni(pt)al Coatings Oxidized at 1150 C for 2000 1-h Cycles

NASA Technical Reports Server (NTRS)

Smialek, James L.; Garg, Anita

2010-01-01

The surface structure of scales formed on Ni(Pt)Al coatings was characterized by SEM/EDS/BSE in plan view. Two nominally identical {100} samples of aluminide coated CMSX4 single crystal were oxidized at 1150 C for 2000 1-h cycles and were found to produce somewhat disparate behavior. One sample, with less propensity for coating grain boundary ridge deformation, presented primarily alpha-Al2O3 scale structures, with minimal weight loss and spallation. The original scale structure, still retained over most of the sample, consisted of the classic theta-alpha transformation-induced ridge network structure, with approx. 25 nm crystallographic steps and terraces indicative of surface rearrangement to low energy alumina planes. The scale grain boundary ridges were often decorated with a fine, uniform distribution of (Hf,Ti)O2 particles. Another sample, producing steady state weight losses, exhibited much interfacial spallation and a complex assortment of different structures. Broad areas of interfacial spalling, crystallographically-faceted (Ni,Co)(Al,Cr)2O4 spinel, with an alpha-Al2O3 base scale, were the dominant features. Other regions exhibited nodular spinel grains, with fine or (Ta,Ti)-rich (rutile) particles decorating or interspersed with the spinel. While these features were consistent with a coating that presented more deformation at extruded grain boundaries, the root cause of the different behavior between the duplicate samples could not be conclusively identified.

Emergence, evolution and scaling of online social networks.

PubMed

Wang, Le-Zhi; Huang, Zi-Gang; Rong, Zhi-Hai; Wang, Xiao-Fan; Lai, Ying-Cheng

2014-01-01

Online social networks have become increasingly ubiquitous and understanding their structural, dynamical, and scaling properties not only is of fundamental interest but also has a broad range of applications. Such networks can be extremely dynamic, generated almost instantaneously by, for example, breaking-news items. We investigate a common class of online social networks, the user-user retweeting networks, by analyzing the empirical data collected from Sina Weibo (a massive twitter-like microblogging social network in China) with respect to the topic of the 2011 Japan earthquake. We uncover a number of algebraic scaling relations governing the growth and structure of the network and develop a probabilistic model that captures the basic dynamical features of the system. The model is capable of reproducing all the empirical results. Our analysis not only reveals the basic mechanisms underlying the dynamics of the retweeting networks, but also provides general insights into the control of information spreading on such networks.

Applications of genetic data to improve management and conservation of river fishes and their habitats

USGS Publications Warehouse

Scribner, Kim T.; Lowe, Winsor H.; Landguth, Erin L.; Luikart, Gordon; Infante, Dana M.; Whelan, Gary; Muhlfeld, Clint C.

2015-01-01

Environmental variation and landscape features affect ecological processes in fluvial systems; however, assessing effects at management-relevant temporal and spatial scales is challenging. Genetic data can be used with landscape models and traditional ecological assessment data to identify biodiversity hotspots, predict ecosystem responses to anthropogenic effects, and detect impairments to underlying processes. We show that by combining taxonomic, demographic, and genetic data of species in complex riverscapes, managers can better understand the spatial and temporal scales over which environmental processes and disturbance influence biodiversity. We describe how population genetic models using empirical or simulated genetic data quantify effects of environmental processes affecting species diversity and distribution. Our summary shows that aquatic assessment initiatives that use standardized data sets to direct management actions can benefit from integration of genetic data to improve the predictability of disturbance–response relationships of river fishes and their habitats over a broad range of spatial and temporal scales.

Temporal Structure of Volatility Fluctuations

NASA Astrophysics Data System (ADS)

Wang, Fengzhong; Yamasaki, Kazuko; Stanley, H. Eugene; Havlin, Shlomo

Volatility fluctuations are of great importance for the study of financial markets, and the temporal structure is an essential feature of fluctuations. To explore the temporal structure, we employ a new approach based on the return interval, which is defined as the time interval between two successive volatility values that are above a given threshold. We find that the distribution of the return intervals follows a scaling law over a wide range of thresholds, and over a broad range of sampling intervals. Moreover, this scaling law is universal for stocks of different countries, for commodities, for interest rates, and for currencies. However, further and more detailed analysis of the return intervals shows some systematic deviations from the scaling law. We also demonstrate a significant memory effect in the return intervals time organization. We find that the distribution of return intervals is strongly related to the correlations in the volatility.

Fabrication of coronagraph masks and laboratory scale star-shade masks: characteristics, defects, and performance

NASA Astrophysics Data System (ADS)

Balasubramanian, Kunjithapatham; Riggs, A. J. Eldorado; Cady, Eric; White, Victor; Yee, Karl; Wilson, Daniel; Echternach, Pierre; Muller, Richard; Mejia Prada, Camilo; Seo, Byoung-Joon; Shi, Fang; Ryan, Daniel; Fregoso, Santos; Metzman, Jacob; Wilson, Robert Casey

2017-09-01

NASA WFIRST mission has planned to include a coronagraph instrument to find and characterize exoplanets. Masks are needed to suppress the host star light to better than 10-8 - 10-9 level contrast over a broad bandwidth to enable the coronagraph mission objectives. Such masks for high contrast coronagraphic imaging require various fabrication technologies to meet a wide range of specifications, including precise shapes, micron scale island features, ultra-low reflectivity regions, uniformity, wave front quality, etc. We present the technologies employed at JPL to produce these pupil plane and image plane coronagraph masks, and lab-scale external occulter masks, highlighting accomplishments from the high contrast imaging testbed (HCIT) at JPL and from the high contrast imaging lab (HCIL) at Princeton University. Inherent systematic and random errors in fabrication and their impact on coronagraph performance are discussed with model predictions and measurements.

Experimental evaluation of expendable supersonic nozzle concepts

NASA Technical Reports Server (NTRS)

Baker, V.; Kwon, O.; Vittal, B.; Berrier, B.; Re, R.

1990-01-01

Exhaust nozzles for expendable supersonic turbojet engine missile propulsion systems are required to be simple, short and compact, in addition to having good broad-range thrust-minus-drag performance. A series of convergent-divergent nozzle scale model configurations were designed and wind tunnel tested for a wide range of free stream Mach numbers and nozzle pressure ratios. The models included fixed geometry and simple variable exit area concepts. The experimental and analytical results show that the fixed geometry configurations tested have inferior off-design thrust-minus-drag performance in the transonic Mach range. A simple variable exit area configuration called the Axi-Quad nozzle, combining features of both axisymmetric and two-dimensional convergent-divergent nozzles, performed well over a broad range of operating conditions. Analytical predictions of the flow pattern as well as overall performance of the nozzles, using a fully viscous, compressible CFD code, compared very well with the test data.

Tests of crustal divergence models for Aphrodite Terra, Venus

NASA Technical Reports Server (NTRS)

Grimm, Robert E.; Solomon, Sean C.

1989-01-01

This paper discusses the characteristics of Aphrodite Terra, the highland region of Venus which is considered to be a likely site of mantle upwelling, active volcanism, and extensional tectonics, and examines the relation of these features to three alternative kinematic models for the interaction of mantle convection with the surface. These the 'vertical tectonics' model, in which little horizontal surface displacement results from mantle flow; the 'plate divergence' model, in which shear strain from large horizontal displacements is accommodated only in narrow zones of deformation; and the 'distributed deformation' model, in which strain from large horizontal motions is broadly accommodated. No convincing observational evidence was found to support the rigid-plate divergence, while the evidence of large-scale horizontal motions of Aphrodite argues against purely vertical tectonics. A model is proposed, involving a broad disruption of a thin lithosphere. In such a model, lineaments are considered to be surface manifestations of mantle convective flow.

Science Cafes: Engaging graduate students one drink at a time!

NASA Astrophysics Data System (ADS)

Schiebel, H.; Chen, R. F.

2016-02-01

Science Cafes are events that take place in casual settings (pubs, coffeehouses) that are typically open to a broad audience and feature engaging conversations with scientists about particular topics. Science Cafes are a grassroots movement and exist on an international scale with a common goal of engaging broad audiences in informal scientific discussions. Graduate Students for Ocean Education (GrOE), funded by COSEE OCEAN (Center for Ocean Science Education Excellence—Ocean Communities in Science Education And social Networks), has taken this model and honed in on a specific audience: graduate students. Through monthly Science Cafes with varying themes (ocean acidification to remote sensing), GrOE has engaged over two hundred graduate students throughout New England. While attendance at the Science Cafes is consistent, the presence and engagement of graduate students on the GrOE Facebook page is now growing, a trend attributed to having face-to-face contact with scientists and other graduate students.

Converging shock flows for a Mie-Grüneisen equation of state

NASA Astrophysics Data System (ADS)

Ramsey, Scott D.; Schmidt, Emma M.; Boyd, Zachary M.; Lilieholm, Jennifer F.; Baty, Roy S.

2018-04-01

Previous work has shown that the one-dimensional (1D) inviscid compressible flow (Euler) equations admit a wide variety of scale-invariant solutions (including the famous Noh, Sedov, and Guderley shock solutions) when the included equation of state (EOS) closure model assumes a certain scale-invariant form. However, this scale-invariant EOS class does not include even simple models used for shock compression of crystalline solids, including many broadly applicable representations of Mie-Grüneisen EOS. Intuitively, this incompatibility naturally arises from the presence of multiple dimensional scales in the Mie-Grüneisen EOS, which are otherwise absent from scale-invariant models that feature only dimensionless parameters (such as the adiabatic index in the ideal gas EOS). The current work extends previous efforts intended to rectify this inconsistency, by using a scale-invariant EOS model to approximate a Mie-Grüneisen EOS form. To this end, the adiabatic bulk modulus for the Mie-Grüneisen EOS is constructed, and its key features are used to motivate the selection of a scale-invariant approximation form. The remaining surrogate model parameters are selected through enforcement of the Rankine-Hugoniot jump conditions for an infinitely strong shock in a Mie-Grüneisen material. Finally, the approximate EOS is used in conjunction with the 1D inviscid Euler equations to calculate a semi-analytical Guderley-like imploding shock solution in a metal sphere and to determine if and when the solution may be valid for the underlying Mie-Grüneisen EOS.

Convergence of broad-scale migration strategies in terrestrial birds.

PubMed

La Sorte, Frank A; Fink, Daniel; Hochachka, Wesley M; Kelling, Steve

2016-01-27

Migration is a common strategy used by birds that breed in seasonal environments. Selection for greater migration efficiency is likely to be stronger for terrestrial species whose migration strategies require non-stop transoceanic crossings. If multiple species use the same transoceanic flyway, then we expect the migration strategies of these species to converge geographically towards the most optimal solution. We test this by examining population-level migration trajectories within the Western Hemisphere for 118 migratory species using occurrence information from eBird. Geographical convergence of migration strategies was evident within specific terrestrial regions where geomorphological features such as mountains or isthmuses constrained overland migration. Convergence was also evident for transoceanic migrants that crossed the Gulf of Mexico or Atlantic Ocean. Here, annual population-level movements were characterized by clockwise looped trajectories, which resulted in faster but more circuitous journeys in the spring and more direct journeys in the autumn. These findings suggest that the unique constraints and requirements associated with transoceanic migration have promoted the spatial convergence of migration strategies. The combination of seasonal atmospheric and environmental conditions that has facilitated the use of similar broad-scale migration strategies may be especially prone to disruption under climate and land-use change. © 2016 The Author(s).

Steady induction effects in geomagnetism. Part 1B: Geomagnetic estimation of steady surficial core motions: A non-linear inverse problem

NASA Technical Reports Server (NTRS)

Voorhies, Coerte V.

1993-01-01

The problem of estimating a steady fluid velocity field near the top of Earth's core which induces the secular variation (SV) indicated by models of the observed geomagnetic field is examined in the source-free mantle/frozen-flux core (SFI/VFFC) approximation. This inverse problem is non-linear because solutions of the forward problem are deterministically chaotic. The SFM/FFC approximation is inexact, and neither the models nor the observations they represent are either complete or perfect. A method is developed for solving the non-linear inverse motional induction problem posed by the hypothesis of (piecewise, statistically) steady core surface flow and the supposition of a complete initial geomagnetic condition. The method features iterative solution of the weighted, linearized least-squares problem and admits optional biases favoring surficially geostrophic flow and/or spatially simple flow. Two types of weights are advanced radial field weights for fitting the evolution of the broad-scale portion of the radial field component near Earth's surface implied by the models, and generalized weights for fitting the evolution of the broad-scale portion of the scalar potential specified by the models.

Refined genetic maps reveal sexual dimorphism in human meiotic recombination at multiple scales

NASA Astrophysics Data System (ADS)

Bhérer, Claude; Campbell, Christopher L.; Auton, Adam

2017-04-01

In humans, males have lower recombination rates than females over the majority of the genome, but the opposite is usually true near the telomeres. These broad-scale differences have been known for decades, yet little is known about differences at the fine scale. By combining data sets, we have collected recombination events from over 100,000 meioses and have constructed sex-specific genetic maps at a previously unachievable resolution. Here we show that, although a substantial fraction of the genome shows some degree of sexually dimorphic recombination, the vast majority of hotspots are shared between the sexes, with only a small number of putative sex-specific hotspots. Wavelet analysis indicates that most of the differences can be attributed to the fine scale, and that variation in rate between the sexes can mostly be explained by differences in hotspot magnitude, rather than location. Nonetheless, known recombination-associated genomic features, such as THE1B repeat elements, show systematic differences between the sexes.

Studies of thermal wave phenomena on the Jovian planets

NASA Technical Reports Server (NTRS)

Deming, Drake

1991-01-01

Ground based and Voyager observations of Jupiter have provided evidence that the tropospheric temperature shows global scale longitudinal variations which are often wavelike in character. Voyager data are reported to exhibit the presence of slowly moving thermal features, wherein the jovian tropospheric temperature patterns are not advected by the equatorial zonal winds, but are not found to rotate at the System III (interior) rate. Ground based data in a broad infrared band (8 to 13 micron) show a wavelike structure whose amplitude and spatial scale are similar to the reported properties of the slowly moving thermal features. This study is directed toward obtaining additional ground based data in infrared spectral bands whose contribution functions are optimized for specific atmospheric regions (tropospheric at 20 micron, and stratospheric at 7.8 micron), in order to confirm the previous results, and to identify the nature and physical significance of wavelike longitudinal temperature fluctuations on the Jovian planets. A 2-D infrared array detector and low resolution cryogenic grating spectrometer is being adapted to obtain maps in approx. 2/cm bandpasses.

Geometrically robust image watermarking by sector-shaped partitioning of geometric-invariant regions.

PubMed

Tian, Huawei; Zhao, Yao; Ni, Rongrong; Cao, Gang

2009-11-23

In a feature-based geometrically robust watermarking system, it is a challenging task to detect geometric-invariant regions (GIRs) which can survive a broad range of image processing operations. Instead of commonly used Harris detector or Mexican hat wavelet method, a more robust corner detector named multi-scale curvature product (MSCP) is adopted to extract salient features in this paper. Based on such features, disk-like GIRs are found, which consists of three steps. First, robust edge contours are extracted. Then, MSCP is utilized to detect the centers for GIRs. Third, the characteristic scale selection is performed to calculate the radius of each GIR. A novel sector-shaped partitioning method for the GIRs is designed, which can divide a GIR into several sector discs with the help of the most important corner (MIC). The watermark message is then embedded bit by bit in each sector by using Quantization Index Modulation (QIM). The GIRs and the divided sector discs are invariant to geometric transforms, so the watermarking method inherently has high robustness against geometric attacks. Experimental results show that the scheme has a better robustness against various image processing operations including common processing attacks, affine transforms, cropping, and random bending attack (RBA) than the previous approaches.

Neural Computations in a Dynamical System with Multiple Time Scales.

PubMed

Mi, Yuanyuan; Lin, Xiaohan; Wu, Si

2016-01-01

Neural systems display rich short-term dynamics at various levels, e.g., spike-frequency adaptation (SFA) at the single-neuron level, and short-term facilitation (STF) and depression (STD) at the synapse level. These dynamical features typically cover a broad range of time scales and exhibit large diversity in different brain regions. It remains unclear what is the computational benefit for the brain to have such variability in short-term dynamics. In this study, we propose that the brain can exploit such dynamical features to implement multiple seemingly contradictory computations in a single neural circuit. To demonstrate this idea, we use continuous attractor neural network (CANN) as a working model and include STF, SFA and STD with increasing time constants in its dynamics. Three computational tasks are considered, which are persistent activity, adaptation, and anticipative tracking. These tasks require conflicting neural mechanisms, and hence cannot be implemented by a single dynamical feature or any combination with similar time constants. However, with properly coordinated STF, SFA and STD, we show that the network is able to implement the three computational tasks concurrently. We hope this study will shed light on the understanding of how the brain orchestrates its rich dynamics at various levels to realize diverse cognitive functions.

Influence of landscape structure on reef fish assemblages

USGS Publications Warehouse

Grober-Dunsmore, R.; Frazer, T.K.; Beets, J.P.; Lindberg, W.J.; Zwick, P.; Funicelli, N.A.

2008-01-01

Management of tropical marine environments calls for interdisciplinary studies and innovative methodologies that consider processes occurring over broad spatial scales. We investigated relationships between landscape structure and reef fish assemblage structure in the US Virgin Islands. Measures of landscape structure were transformed into a reduced set of composite indices using principal component analyses (PCA) to synthesize data on the spatial patterning of the landscape structure of the study reefs. However, composite indices (e.g., habitat diversity) were not particularly informative for predicting reef fish assemblage structure. Rather, relationships were interpreted more easily when functional groups of fishes were related to individual habitat features. In particular, multiple reef fish parameters were strongly associated with reef context. Fishes responded to benthic habitat structure at multiple spatial scales, with various groups of fishes each correlated to a unique suite of variables. Accordingly, future experiments should be designed to test functional relationships based on the ecology of the organisms of interest. Our study demonstrates that landscape-scale habitat features influence reef fish communities, illustrating promise in applying a landscape ecology approach to better understand factors that structure coral reef ecosystems. Furthermore, our findings may prove useful in design of spatially-based conservation approaches such as marine protected areas (MPAs), because landscape-scale metrics may serve as proxies for areas with high species diversity and abundance within the coral reef landscape. ?? 2007 Springer Science+Business Media B.V.

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.

PubMed

Andrabi, Munazah; Hutchins, Andrew Paul; Miranda-Saavedra, Diego; Kono, Hidetoshi; Nussinov, Ruth; Mizuguchi, Kenji; Ahmad, Shandar

2017-06-22

DNA shape is emerging as an important determinant of transcription factor binding beyond just the DNA sequence. The only tool for large scale DNA shape estimates, DNAshape was derived from Monte-Carlo simulations and predicts four broad and static DNA shape features, Propeller twist, Helical twist, Minor groove width and Roll. The contributions of other shape features e.g. Shift, Slide and Opening cannot be evaluated using DNAshape. Here, we report a novel method DynaSeq, which predicts molecular dynamics-derived ensembles of a more exhaustive set of DNA shape features. We compared the DNAshape and DynaSeq predictions for the common features and applied both to predict the genome-wide binding sites of 1312 TFs available from protein interaction quantification (PIQ) data. The results indicate a good agreement between the two methods for the common shape features and point to advantages in using DynaSeq. Predictive models employing ensembles from individual conformational parameters revealed that base-pair opening - known to be important in strand separation - was the best predictor of transcription factor-binding sites (TFBS) followed by features employed by DNAshape. Of note, TFBS could be predicted not only from the features at the target motif sites, but also from those as far as 200 nucleotides away from the motif.

Quantifying drivers of wild pig movement across multiple spatial and temporal scales.

PubMed

Kay, Shannon L; Fischer, Justin W; Monaghan, Andrew J; Beasley, James C; Boughton, Raoul; Campbell, Tyler A; Cooper, Susan M; Ditchkoff, Stephen S; Hartley, Steve B; Kilgo, John C; Wisely, Samantha M; Wyckoff, A Christy; VerCauteren, Kurt C; Pepin, Kim M

2017-01-01

The movement behavior of an animal is determined by extrinsic and intrinsic factors that operate at multiple spatio-temporal scales, yet much of our knowledge of animal movement comes from studies that examine only one or two scales concurrently. Understanding the drivers of animal movement across multiple scales is crucial for understanding the fundamentals of movement ecology, predicting changes in distribution, describing disease dynamics, and identifying efficient methods of wildlife conservation and management. We obtained over 400,000 GPS locations of wild pigs from 13 different studies spanning six states in southern U.S.A., and quantified movement rates and home range size within a single analytical framework. We used a generalized additive mixed model framework to quantify the effects of five broad predictor categories on movement: individual-level attributes, geographic factors, landscape attributes, meteorological conditions, and temporal variables. We examined effects of predictors across three temporal scales: daily, monthly, and using all data during the study period. We considered both local environmental factors such as daily weather data and distance to various resources on the landscape, as well as factors acting at a broader spatial scale such as ecoregion and season. We found meteorological variables (temperature and pressure), landscape features (distance to water sources), a broad-scale geographic factor (ecoregion), and individual-level characteristics (sex-age class), drove wild pig movement across all scales, but both the magnitude and shape of covariate relationships to movement differed across temporal scales. The analytical framework we present can be used to assess movement patterns arising from multiple data sources for a range of species while accounting for spatio-temporal correlations. Our analyses show the magnitude by which reaction norms can change based on the temporal scale of response data, illustrating the importance of appropriately defining temporal scales of both the movement response and covariates depending on the intended implications of research (e.g., predicting effects of movement due to climate change versus planning local-scale management). We argue that consideration of multiple spatial scales within the same framework (rather than comparing across separate studies post-hoc ) gives a more accurate quantification of cross-scale spatial effects by appropriately accounting for error correlation.

Explicitly searching for useful inventions: dynamic relatedness and the costs of connecting versus synthesizing

PubMed Central

2010-01-01

Inventions combine technological features. When features are barely related, burdensomely broad knowledge is required to identify the situations that they share. When features are overly related, burdensomely broad knowledge is required to identify the situations that distinguish them. Thus, according to my first hypothesis, when features are moderately related, the costs of connecting and costs of synthesizing are cumulatively minimized, and the most useful inventions emerge. I also hypothesize that continued experimentation with a specific set of features is likely to lead to the discovery of decreasingly useful inventions; the earlier-identified connections reflect the more common consumer situations. Covering data from all industries, the empirical analysis provides broad support for the first hypothesis. Regressions to test the second hypothesis are inconclusive when examining industry types individually. Yet, this study represents an exploratory investigation, and future research should test refined hypotheses with more sophisticated data, such as that found in literature-based discovery research. PMID:21297855

Hierarchical nanostructures for functional materials.

PubMed

Qin, Zhao; Buehler, Markus J

2018-07-13

Naturally occurring biomaterials often have amazing functions, such as mechanical, thermal, electromagnetic, biological, optical and acoustic. These superior performances are often due to their hierarchical organizations of natural materials, starting from the nanoscopic scale and extending all the way to the macroscopic level. This topical issue features articles dedicated to understanding, designing and characterizing complex de novo hierarchical materials for a variety of applications. This research area is quickly evolving, and we hope that future work will drive the rational designs of innovative functional materials and generate deep impacts to broad engineering fields that address major societal challenges and needs.

The hydrogen diffusion in liquid aluminum alloys from ab initio molecular dynamics

NASA Astrophysics Data System (ADS)

Jakse, N.; Pasturel, A.

2014-09-01

We study the hydrogen diffusion in liquid aluminum alloys through extensive ab initio molecular dynamics simulations. At the microscopic scale, we show that the hydrogen motion is characterized by a broad distribution of spatial jumps that does not correspond to a Brownian motion. To determine the self-diffusion coefficient of hydrogen in liquid aluminum alloys, we use a generalized continuous time random walk model recently developed to describe the hydrogen diffusion in pure aluminum. In particular, we show that the model successfully accounts the effects of alloying elements on the hydrogen diffusion in agreement with experimental features.

Hierarchical nanostructures for functional materials

NASA Astrophysics Data System (ADS)

Qin, Zhao; Buehler, Markus J.

2018-07-01

Naturally occurring biomaterials often have amazing functions, such as mechanical, thermal, electromagnetic, biological, optical and acoustic. These superior performances are often due to their hierarchical organizations of natural materials, starting from the nanoscopic scale and extending all the way to the macroscopic level. This topical issue features articles dedicated to understanding, designing and characterizing complex de novo hierarchical materials for a variety of applications. This research area is quickly evolving, and we hope that future work will drive the rational designs of innovative functional materials and generate deep impacts to broad engineering fields that address major societal challenges and needs.

Microornamentation of leaf chameleons (Chamaeleonidae: Brookesia, Rhampholeon, and Rieppeleon)--with comments on the evolution of microstructures in the Chamaeleonidae.

PubMed

Riedel, Jendrian; Böhme, Wolfgang; Bleckmann, Horst; Spinner, Marlene

2015-02-01

Chameleons (Chamaeleonidae) feature many adaptations to their arboreal lifestyle, including zygodactylous feet, a prehensile tail, and epidermal microstructures. In arboreal tree chameleons, the substrate-contacting site of the feet and tail is covered by microscopic hair-like structures (setae) of 6-20 µm length. Their friction enhancing function has been shown in recent studies. Leaf chameleons and one representative of the tree chameleons (Chamaeleo namaquensis) secondarily have become ground-dwelling. Because leaf chameleons are paraphyletic, one could expect that in the three leaf chameleon genera Brookesia, Rhampholeon, and Rieppeleon and the tree chameleon Ch. namaquensis, epidermis has adapted independently to terrestrial locomotion. Using scanning electron microscopy, we investigated the substrate-contacting surfaces of the feet (subdigital) of 17 leaf chameleon species and five tree chameleon species that have not yet been examined. Additionally, surfaces not involved in locomotion, the flanks (dorsolateral), and scale interstices, were examined. Although the subdigital microstructures in leaf chameleons are more diverse than in tree chameleons, we found some features across the genera. The subdigital microornamentation of Rhampholeon spinosus consists of long thin setae and spines, comparable to those of tree chameleons. All other Rhampholeon species have spines or short but broad setae. Rh. spectrum had tooth-like structures instead of setae. Subdigital scales of Brookesia have either thorns or conical scale-tops in the center and feature honeycomb microstructures. In Rieppeleon, subdigital scales have a thorn. Scale surfaces are covered by honeycombs and short hair-like structures (spines). As subdigital scales with a thorn in the center and honeycomb microstructures were also found in the terrestrial tree chameleon Ch. namaquensis, one can assume that this geometry is a convergent adaptation to terrestrial locomotion. Despite the great number of genus-specific traits, the convergent evolution of honey-comb structures in Brookesia, Rieppeleon, and Ch. namaquensis and the high variability of spines and setae in Rhampholeon suggests a rapid adaptation of subdigital microornamentation in Chamaeleonidae. © 2014 Wiley Periodicals, Inc.

Design Rules for Tailoring Antireflection Properties of Hierarchical Optical Structures

DOE PAGES

Leon, Juan J. Diaz; Hiszpanski, Anna M.; Bond, Tiziana C.; ...

2017-05-18

Hierarchical structures consisting of small sub-wavelength features stacked atop larger structures have been demonstrated as an effective means of reducing the reflectance of surfaces. However, optical devices require different antireflective properties depending on the application, and general unifying guidelines on hierarchical structures' design to attain a desired antireflection spectral response are still lacking. The type of reflectivity (diffuse, specular, or total/hemispherical) and its angular- and spectral-dependence are all dictated by the structural parameters. Through computational and experimental studies, guidelines have been devised to modify these various aspects of reflectivity across the solar spectrum by proper selection of the features ofmore » hierarchical structures. In this wavelength regime, micrometer-scale substructures dictate the long-wavelength spectral response and effectively reduce specular reflectance, whereas nanometer-scale substructures dictate primarily the visible wavelength spectral response and reduce diffuse reflectance. Coupling structures having these two length scales into hierarchical arrays impressively reduces surfaces' hemispherical reflectance across a broad spectrum of wavelengths and angles. Furthermore, such hierarchical structures in silicon are demonstrated having an average total reflectance across the solar spectrum of 1.1% (average weighted reflectance of 1% in the 280–2500 nm range of the AM 1.5 G spectrum) and specular reflectance <1% even at angles of incidence as high as 67°.« less

Gradients, vegetation and climate: spatial and temporal dynamics in the Olympic Mountains, USA

USGS Publications Warehouse

Peterson, David L.; Schreiner, Edward G.; Buckingham, Nelsa M.

1997-01-01

The steep environmental gradients of mountains result in the juxtaposition of diverse vegetation associations with narrow ecotones because life zones are compressed. Variation in geologic substrate, landforms, and soils, in combination with steep environmental gradients, create habitat diversity across spatial scales from 106 ha to <10 m2. This leads to higher biodiversity in a smaller space than in landscapes with less topographic variation. Mountains are often considered to be refuges for biological diversity at the regional scale, although variation in landscape features creates refuges at a fine scale as well. Mountains should also be considered a source of biological diversity, because they provide the germplasm for migration into lowland areas following glacial recession. Many taxa are distributed over a broad range of elevations and habitats, which maximizes the potential to respond to environmental perturbations. Reorganization of species distribution and abundance as a result of climatic change may be impacted considerably by human-caused fragmentation of landscape features, especially at lower elevations. This paper uses palaeoecological and biogeographical data to investigate the spatial and temporal vegetation dynamics of a steep maritime range, the Olympic Mountains (USA). The role of resource management in protecting vegetation in a fragmented landscape is discussed, with emphasis on how to address uncertainties such as climatic change.

Linking the concept of scale to studies of biological diversity: evolving approaches and tools.

USGS Publications Warehouse

Beever, E.A.; Swihart, R.K.; Bestelmeyer, B. T.

2006-01-01

Although the concepts of scale and biological diversity independently have received rapidly increasing attention in the scientific literature since the 1980s, the rate at which the two concepts have been investigated jointly has grown much more slowly. We find that scale considerations have been incorporated explicitly into six broad areas of investigation related to biological diversity: (1) heterogeneity within and among ecosystems, (2) disturbance ecology, (3) conservation and restoration, (4) invasion biology, (5) importance of temporal scale for understanding processes, and (6) species responses to environmental heterogeneity. In addition to placing the papers of this Special Feature within the context of brief summaries of the expanding literature on these six topics, we provide an overview of tools useful for integrating scale considerations into studies of biological diversity. Such tools include hierarchical and structural-equation modelling, kriging, variable-width buffers, k-fold cross-validation, and cascading graph diagrams, among others. Finally, we address some of the major challenges and research frontiers that remain, and conclude with a look to the future.

Three new endemic species of Epictia Gray, 1845 (Serpentes: Leptotyphlopidae) from the dry forest of northwestern Peru.

PubMed

Koch, Claudia; Venegas, Pablo J; Böhme, Wolfgang

2015-06-02

Three new blind snake species of the genus Epictia are described based on material collected in the Peruvian Regions Amazonas, Cajamarca and La Libertad. All three species are well differentiated from all congeners based on characteristics of their morphology and coloration. They share 10 scale rows around the middle of the tail and possess two supralabials with the anterior one in broad contact with the supraocular. Epictia septemlineata sp. nov. has 16 subcaudal scales, 257 mid-dorsal scale rows, a yellowish-white rostral, and a black terminal spine. Epictia vanwallachi sp. nov. exhibits 16 subcaudals, 188 mid-dorsal scale rows, a grayish-brown rostral, and a yellow terminal spine. Epictia antoniogarciai sp. nov. features 14-18 subcaudals, 195-208 mid-dorsal scale rows, a bright yellow or yellowish-white rostral, and the terminal spine and terminal portion of the tail yellow. All three species were collected in the interandean dry forest valleys of the Marañón River and its tributaries. This region is an area of endemism and warrants further attention from systematic and conservation biologists.

Comparing the VIRTIS Spectrum of 67P/Churyumov-Gerasimenko to Wild 2 and in Primitive Interplanetary Dust Particles

NASA Astrophysics Data System (ADS)

Flynn, George

2016-04-01

The Visible and Infrared Thermal Imaging Spectrometer (VIRTIS) instrument, a point spectrometer with high spectral resolution covering the range from 2 to 5 microns, on the ESA Rosetta spacecraft obtained spectra of the surface of Comet 67P/Churyumov-Gerasimenko. The spectral region covered by VIRTIS has been well studied in meteorites, interplanetary dust particles (IDPs) collected by NASA from the Earth's stratosphere, and the samples of Comet 81P/Wild 2 that were delivered to Earth by the NASA Stardust spacecraft. Infrared spectra of the nucleus of Comet 67P/Churyumov-Gerasimenko acquired by VIRTIS show a broad absorption band observed at ~3.3 μm, a region of the spectrum where C-H, O-H, and N-H stretching features occur (Capaccioni et al., 2015). This broad feature is similar to the O-H feature exhibited by hydrous minerals, but shifted to a significantly longer wavelength. Capaccioni et al. (2015) compared the VIRTIS spectra to laboratory spectra of carbonaceous chondrite meteorites of the CI, CM, and CR types and concluded that none of the typical features of these meteorite spectra are compatible with the spectra of the surface of 67P/Churyumov-Gerasimenko. Comparison of VIRTIS spectra of 67P/ Churyumov-Gerasimenko to the laboratory spectra of well-characterized extraterrestrial materials including the Wild 2 dust and the IDPs, a significant fraction of which are believed to be cometary, could aid in the interpretation of the 67P/Churyumov-Gerasimenko spectra. None of the Wild 2 particles examined by infrared spectroscopy exhibit an O-H feature, but this may be due to the high temperature reached during their capture in the aerogel collection medium. The O-H feature is also absent in all anhydrous IDPs. The hydrous IDPs exhibit varying strengths of both aliphatic C-H absorption features and the O-H absorption feature, but, as with the meteorites, the O-H feature occurs at a significantly shorter wavelength than the broad feature detected in 67P/Churyumov-Gerasimenko. Only one of the more than 50 IDPs analyzed by infrared spectroscopy has an infrared spectrum similar to that of 67P/Churyumov-Gerasimenko. This large, hydrous IDP, L2021 C10, has a broad absorption feature centered at the same position as the feature observed in 67P/Churyumov-Gerasimenko. In the case of L2021 C10 this feature is attributed to an O-H absorption feature in the position normally seen in hydrous minerals as well as a broad aromatic C-H feature, rarely detected in IDPs, and the aliphatic C-H feature seen in all IDPs examined thus far (Flynn et al., 2004). In the case of the VIRTIS spectrum of 67P/Churyumov-Gerasimenko the apparent shift of the broad O-H feature may actually result from the superposition of O-H and aromatic C-H features, both at their normal wavelengths. References: Capaccioni, F. et al. (2015) Science, 347 no. 6220, DOI: 10.1126/science.aaa0628. Flynn, G. J. et al. (2004) Advances in Space Research, 33, 57-66.

Spatial correlations of Diceroprocta apache and its host plants: Evidence for a negative impact from Tamarix invasion

USGS Publications Warehouse

Ellingson, A.R.; Andersen, D.C.

2002-01-01

1. The hypothesis that the habitat-scale spatial distribution of the, Apache cicada Diceroprocta apache Davis is unaffected by the presence of the invasive exotic saltcedar Tamarix ramosissima was tested using data from 205 1-m2 quadrats placed within the flood-plain of the Bill Williams River, Arizona, U.S.A. Spatial dependencies within and between cicada density and habitat variables were estimated using Moran's I and its bivariate analogue to discern patterns and associations at spatial scales from 1 to 30 m. 2. Apache cicadas were spatially aggregated in high-density clusters averaging 3m in diameter. A positive association between cicada density, estimated by exuvial density, and the per cent canopy cover of a native tree, Goodding's willow Salix gooddingii, was detected in a non-spatial correlation analysis. No non-spatial association between cicada density and saltcedar canopy cover was detected. 3. Tests for spatial cross-correlation using the bivariate IYZ indicated the presence of a broad-scale negative association between cicada density and saltcedar canopy cover. This result suggests that large continuous stands of saltcedar are associated with reduced cicada density. In contrast, positive associations detected at spatial scales larger than individual quadrats suggested a spill-over of high cicada density from areas featuring Goodding's willow canopy into surrounding saltcedar monoculture. 4. Taken together and considered in light of the Apache cicada's polyphagous habits, the observed spatial patterns suggest that broad-scale factors such as canopy heterogeneity affect cicada habitat use more than host plant selection. This has implications for management of lower Colorado River riparian woodlands to promote cicada presence and density through maintenance or creation of stands of native trees as well as manipulation of the characteristically dense and homogeneous saltcedar canopies.

Spatial correlations of Diceroprocta apache and its host plants: Evidence for a negative impact from Tamarix invasion

USGS Publications Warehouse

Ellingson, A.R.; Andersen, D.C.

2002-01-01

1. The hypothesis that the habitat-scale spatial distribution of the Apache cicada Diceroprocta apache Davis is unaffected by the presence of the invasive exotic saltcedar Tamarix ramosissima was tested using data from 205 1-m2 quadrats placed within the flood-plain of the Bill Williams River, Arizona, U.S.A. Spatial dependencies within and between cicada density and habitat variables were estimated using Moran's I and its bivariate analogue to discern patterns and associations at spatial scales from 1 to 30 m.2. Apache cicadas were spatially aggregated in high-density clusters averaging 3 m in diameter. A positive association between cicada density, estimated by exuvial density, and the per cent canopy cover of a native tree, Goodding's willow Salix gooddingii, was detected in a non-spatial correlation analysis. No non-spatial association between cicada density and saltcedar canopy cover was detected.3. Tests for spatial cross-correlation using the bivariate IYZ indicated the presence of a broad-scale negative association between cicada density and saltcedar canopy cover. This result suggests that large continuous stands of saltcedar are associated with reduced cicada density. In contrast, positive associations detected at spatial scales larger than individual quadrats suggested a spill-over of high cicada density from areas featuring Goodding's willow canopy into surrounding saltcedar monoculture.4. Taken together and considered in light of the Apache cicada's polyphagous habits, the observed spatial patterns suggest that broad-scale factors such as canopy heterogeneity affect cicada habitat use more than host plant selection. This has implications for management of lower Colorado River riparian woodlands to promote cicada presence and density through maintenance or creation of stands of native trees as well as manipulation of the characteristically dense and homogeneous saltcedar canopies.

Comparing ground-penetrating radar (GPR) techniques in 18th-century yard spaces

NASA Astrophysics Data System (ADS)

Carducci, Christiane M.

Yards surrounding historical homesteads are the liminal space between private houses and public space, and contain artifactural and structural remains that help us understand how the residents interfaced with the world. Comparing different yards means collecting reliable evidence, and what is missing is just as important as what is found. Excavations can rely on randomly placed 50-cm shovel test pits to locate features, but this can miss important features. Shallow geophysics, in particular ground-penetrating radar (GPR), can be used to identify features and reliably and efficiently collect evidence. GPR is becoming more integrated into archaeological investigations due to the potential to quickly and nondestructively identify archaeological features and to recent advancements in processing software that make these methods more user-friendly. The most efficacious GPR surveys must take into consideration what is expected to be below the surface, what features look like in GPR outputs, the best methods for detecting features, and the limitations of GPR surveys. Man-made landscape features are expected to have existed within yard spaces, and the alteration of these features shows how the domestic economy of the residence changed through time. This study creates an inventory of these features. By producing a standardized sampling method for GPR in yard spaces, archaeologists can quickly map subsurface features and carry out broad comparisons between yards. To determine the most effective sampling method, several GPR surveys were conducted at the 18th-century Durant-Kenrick House in Newton, Massachusetts, using varied line spacing, line direction, and bin size. Examples of the GPR signatures of features, obtained using GPR-Slice software, from the Durant-Kenrick House and similar sites were analyzed. The efficacy of each method was determined based on the number of features distinguished, clarity of the results, and the time involved. The survey at Newton showed that ground surface conditions are extremely important when using GPR. Furthermore, GPR and archaeological excavations together provide the most complete interpretation because GPR has the ability to detect large-scale features that might be missed with test units, while excavation provides more detailed information, finds small-scale objects, and can be used to test false negatives seen in GPR surveys.

Shortening the HIV-1 TAR RNA Bulge by a Single Nucleotide Preserves Motional Modes over a Broad Range of Time Scales.

PubMed

Merriman, Dawn K; Xue, Yi; Yang, Shan; Kimsey, Isaac J; Shakya, Anisha; Clay, Mary; Al-Hashimi, Hashim M

2016-08-16

Helix-junction-helix (HJH) motifs are flexible building blocks of RNA architecture that help define the orientation and dynamics of helical domains. They are also frequently involved in adaptive recognition of proteins and small molecules and in the formation of tertiary contacts. Here, we use a battery of nuclear magnetic resonance techniques to examine how deleting a single bulge residue (C24) from the human immunodeficiency virus type 1 (HIV-1) transactivation response element (TAR) trinucleotide bulge (U23-C24-U25) affects dynamics over a broad range of time scales. Shortening the bulge has an effect on picosecond-to-nanosecond interhelical and local bulge dynamics similar to that casued by increasing the Mg(2+) and Na(+) concentration, whereby a preexisting two-state equilibrium in TAR is shifted away from a bent flexible conformation toward a coaxial conformation, in which all three bulge residues are flipped out and flexible. Surprisingly, the point deletion minimally affects microsecond-to-millisecond conformational exchange directed toward two low-populated and short-lived excited conformational states that form through reshuffling of bases pairs throughout TAR. The mutant does, however, adopt a slightly different excited conformational state on the millisecond time scale, in which U23 is intrahelical, mimicking the expected conformation of residue C24 in the excited conformational state of wild-type TAR. Thus, minor changes in HJH topology preserve motional modes in RNA occurring over the picosecond-to-millisecond time scales but alter the relative populations of the sampled states or cause subtle changes in their conformational features.

Origin of the 900 cm{sup −1} broad double-hump OH vibrational feature of strongly hydrogen-bonded carboxylic acids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Hoozen, Brian L.; Petersen, Poul B.

2015-03-14

Medium and strong hydrogen bonds are common in biological systems. Here, they provide structural support and can act as proton transfer relays to drive electron and/or energy transfer. Infrared spectroscopy is a sensitive probe of molecular structure and hydrogen bond strength but strongly hydrogen-bonded structures often exhibit very broad and complex vibrational bands. As an example, strong hydrogen bonds between carboxylic acids and nitrogen-containing aromatic bases commonly display a 900 cm{sup −1} broad feature with a remarkable double-hump structure. Although previous studies have assigned this feature to the OH, the exact origin of the shape and width of this unusualmore » feature is not well understood. In this study, we present ab initio calculations of the contributions of the OH stretch and bend vibrational modes to the vibrational spectrum of strongly hydrogen-bonded heterodimers of carboxylic acids and nitrogen-containing aromatic bases, taking the 7-azaindole—acetic acid and pyridine—acetic acid dimers as examples. Our calculations take into account coupling between the OH stretch and bend modes as well as how both of these modes are affected by lower frequency dimer stretch modes, which modulate the distance between the monomers. Our calculations reproduce the broadness and the double-hump structure of the OH vibrational feature. Where the spectral broadness is primarily caused by the dimer stretch modes strongly modulating the frequency of the OH stretch mode, the double-hump structure results from a Fermi resonance between the out of the plane OH bend and the OH stretch modes.« less

Proximate and landscape factors influence grassland bird distributions

USGS Publications Warehouse

Cunningham, M.A.; Johnson, D.H.

2006-01-01

Ecologists increasingly recognize that birds can respond to features well beyond their normal areas of activity, but little is known about the relative importance of landscapes and proximate factors or about the scales of landscapes that influence bird distributions. We examined the influences of tree cover at both proximate and landscape scales on grassland birds, a group of birds of high conservation concern, in the Sheyenne National Grassland in North Dakota, USA. The Grassland contains a diverse array of grassland and woodland habitats. We surveyed breeding birds on 2015 100 m long transect segments during 2002 and 2003. We modeled the occurrence of 19 species in relation to habitat features (percentages of grassland, woodland, shrubland, and wetland) within each 100-m segment and to tree cover within 200-1600 m of the segment. We used information-theoretic statistical methods to compare models and variables. At the proximate scales, tree cover was the most important variable, having negative influences on 13 species and positive influences on two species. In a comparison of multiple scales, models with only proximate variables were adequate for some species, but models combining proximate with landscape information were best for 17 of 19 species. Landscape-only models were rarely competitive. Combined models at the largest scales (800-1600 m) were best for 12 of 19 species. Seven species had best models including 1600-m landscapes plus proximate factors in at least one year. These were Wilson's Phalarope (Phalaropus tricolor), Sedge Wren (Cistothorus platensis), Field Sparrow (Spizella pusilla), Grasshopper Sparrow (Ammodramus savannarum), Bobolink (Dolychonix oryzivorus), Red-winged Blackbird (Agelaius phoeniceus), and Brown-headed Cowbird (Molothrus ater). These seven are small-bodied species; thus larger-bodied species do not necessarily respond most to the largest landscapes. Our findings suggest that birds respond to habitat features at a variety of scales. Models with only landscape-scale tree cover were rarely competitive, indicating that broad-scale modeling alone, such as that based solely on remotely sensed data, is likely to be inadequate in explaining species distributions. ?? 2006 by the Ecological Society of America.

Contrasting styles of large-scale displacement of unconsolidated sand: examples from the early Jurassic Navajo Sandstone on the Colorado Plateau, USA

NASA Astrophysics Data System (ADS)

Bryant, Gerald

2015-04-01

Large-scale soft-sediment deformation features in the Navajo Sandstone have been a topic of interest for nearly 40 years, ever since they were first explored as a criterion for discriminating between marine and continental processes in the depositional environment. For much of this time, evidence for large-scale sediment displacements was commonly attributed to processes of mass wasting. That is, gravity-driven movements of surficial sand. These slope failures were attributed to the inherent susceptibility of dune sand responding to environmental triggers such as earthquakes, floods, impacts, and the differential loading associated with dune topography. During the last decade, a new wave of research is focusing on the event significance of deformation features in more detail, revealing a broad diversity of large-scale deformation morphologies. This research has led to a better appreciation of subsurface dynamics in the early Jurassic deformation events recorded in the Navajo Sandstone, including the important role of intrastratal sediment flow. This report documents two illustrative examples of large-scale sediment displacements represented in extensive outcrops of the Navajo Sandstone along the Utah/Arizona border. Architectural relationships in these outcrops provide definitive constraints that enable the recognition of a large-scale sediment outflow, at one location, and an equally large-scale subsurface flow at the other. At both sites, evidence for associated processes of liquefaction appear at depths of at least 40 m below the original depositional surface, which is nearly an order of magnitude greater than has commonly been reported from modern settings. The surficial, mass flow feature displays attributes that are consistent with much smaller-scale sediment eruptions (sand volcanoes) that are often documented from modern earthquake zones, including the development of hydraulic pressure from localized, subsurface liquefaction and the subsequent escape of fluidized sand toward the unconfined conditions of the surface. The origin of the forces that produced the lateral, subsurface movement of a large body of sand at the other site is not readily apparent. The various constraints on modeling the generation of the lateral force required to produce the observed displacement are considered here, along with photodocumentation of key outcrop relationships.

Comparative morphology of the penis and clitoris in four species of moles (Talpidae)

PubMed Central

Sinclair, Adriane Watkins; Glickman, Stephen; Catania, Kenneth; Shinohara, Akio; Baskin, Lawrence; Cunha, Gerald R.

2017-01-01

The penile and clitorial anatomy of four species of Talpid moles (broad-footed, star-nosed, hairy-tailed, and Japanese shrew moles) were investigated to define penile and clitoral anatomy and to examine the relationship of the clitoral anatomy with the presence or absence of ovotestes. The ovotestis contains ovarian tissue and glandular tissue resembling fetal testicular tissue and can produce androgens. The ovotestis is present in star-nosed and hairy-tailed moles, but not in broad-footed and Japanese shrew moles. Using histology, 3D reconstruction, and morphometric analysis, sexual dimorphism was examined in regard to a nine feature masculine trait score that included perineal appendage length (prepuce), anogenital distance, and presence/absence of bone. The presence/absence of ovotestes was discordant in all four mole species for sex differentiation features. For many sex differentiation features, discordance with ovotestes was observed in at least one mole species. The degree of concordance with ovotestes was highest for hairy-tailed moles and lowest for broad-footed moles. In relationship to phylogenetic clade, sex differentiation features also did not correlate with the similarity/divergence of the features and presence/absence of ovotestes. Hairy-tailed and Japanese shrew moles reside in separated clades, but they exhibit a high degree of congruence. Broad-footed and hairy-tailed moles reside within the same clade but had one of the lowest correlations in features and presence/absence of ovotestes. Thus, phylogenetic affinity and the presence/absence of ovotestes are poor predictors for most sex differentiation features within mole external genitalia. PMID:28251823

FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline

PubMed Central

Deng, Mario; Brägelmann, Johannes; Kryukov, Ivan; Saraiva-Agostinho, Nuno; Perner, Sven

2017-01-01

With its Firebrowse service (http://firebrowse.org/) the Broad Institute is making large-scale multi-platform omics data analysis results publicly available through a Representational State Transfer (REST) Application Programmable Interface (API). Querying this database through an API client from an arbitrary programming environment is an essential task, allowing other developers and researchers to focus on their analysis and avoid data wrangling. Hence, as a first result, we developed a workflow to automatically generate, test and deploy such clients for rapid response to API changes. Its underlying infrastructure, a combination of free and publicly available web services, facilitates the development of API clients. It decouples changes in server software from the client software by reacting to changes in the RESTful service and removing direct dependencies on a specific implementation of an API. As a second result, FirebrowseR, an R client to the Broad Institute’s RESTful Firehose Pipeline, is provided as a working example, which is built by the means of the presented workflow. The package’s features are demonstrated by an example analysis of cancer gene expression data. Database URL: https://github.com/mariodeng/ PMID:28062517

FirebrowseR: an R client to the Broad Institute's Firehose Pipeline.

PubMed

Deng, Mario; Brägelmann, Johannes; Kryukov, Ivan; Saraiva-Agostinho, Nuno; Perner, Sven

2017-01-01

With its Firebrowse service (http://firebrowse.org/) the Broad Institute is making large-scale multi-platform omics data analysis results publicly available through a Representational State Transfer (REST) Application Programmable Interface (API). Querying this database through an API client from an arbitrary programming environment is an essential task, allowing other developers and researchers to focus on their analysis and avoid data wrangling. Hence, as a first result, we developed a workflow to automatically generate, test and deploy such clients for rapid response to API changes. Its underlying infrastructure, a combination of free and publicly available web services, facilitates the development of API clients. It decouples changes in server software from the client software by reacting to changes in the RESTful service and removing direct dependencies on a specific implementation of an API. As a second result, FirebrowseR, an R client to the Broad Institute's RESTful Firehose Pipeline, is provided as a working example, which is built by the means of the presented workflow. The package's features are demonstrated by an example analysis of cancer gene expression data.Database URL: https://github.com/mariodeng/. © The Author(s) 2017. Published by Oxford University Press.

A Standardised Vocabulary for Identifying Benthic Biota and Substrata from Underwater Imagery: The CATAMI Classification Scheme

PubMed Central

Jordan, Alan; Rees, Tony; Gowlett-Holmes, Karen

2015-01-01

Imagery collected by still and video cameras is an increasingly important tool for minimal impact, repeatable observations in the marine environment. Data generated from imagery includes identification, annotation and quantification of biological subjects and environmental features within an image. To be long-lived and useful beyond their project-specific initial purpose, and to maximize their utility across studies and disciplines, marine imagery data should use a standardised vocabulary of defined terms. This would enable the compilation of regional, national and/or global data sets from multiple sources, contributing to broad-scale management studies and development of automated annotation algorithms. The classification scheme developed under the Collaborative and Automated Tools for Analysis of Marine Imagery (CATAMI) project provides such a vocabulary. The CATAMI classification scheme introduces Australian-wide acknowledged, standardised terminology for annotating benthic substrates and biota in marine imagery. It combines coarse-level taxonomy and morphology, and is a flexible, hierarchical classification that bridges the gap between habitat/biotope characterisation and taxonomy, acknowledging limitations when describing biological taxa through imagery. It is fully described, documented, and maintained through curated online databases, and can be applied across benthic image collection methods, annotation platforms and scoring methods. Following release in 2013, the CATAMI classification scheme was taken up by a wide variety of users, including government, academia and industry. This rapid acceptance highlights the scheme’s utility and the potential to facilitate broad-scale multidisciplinary studies of marine ecosystems when applied globally. Here we present the CATAMI classification scheme, describe its conception and features, and discuss its utility and the opportunities as well as challenges arising from its use. PMID:26509918

Emergence of Scale-Free Leadership Structure in Social Recommender Systems

PubMed Central

Zhou, Tao; Medo, Matúš; Cimini, Giulio; Zhang, Zi-Ke; Zhang, Yi-Cheng

2011-01-01

The study of the organization of social networks is important for the understanding of opinion formation, rumor spreading, and the emergence of trends and fashion. This paper reports empirical analysis of networks extracted from four leading sites with social functionality (Delicious, Flickr, Twitter and YouTube) and shows that they all display a scale-free leadership structure. To reproduce this feature, we propose an adaptive network model driven by social recommending. Artificial agent-based simulations of this model highlight a “good get richer” mechanism where users with broad interests and good judgments are likely to become popular leaders for the others. Simulations also indicate that the studied social recommendation mechanism can gradually improve the user experience by adapting to tastes of its users. Finally we outline implications for real online resource-sharing systems. PMID:21857891

Constraints on the optical polarization source in the luminous non-blazar quasar 3C 323.1 (PG 1545+210) from the photometric and polarimetric variability

NASA Astrophysics Data System (ADS)

Kokubo, Mitsuru

2017-05-01

We examine the optical photometric and polarimetric variability of the luminous type 1 non-blazar quasar 3C 323.1 (PG 1545+210). Two optical spectropolarimetric measurements taken during the periods 1996-1998 and 2003 combined with a V-band imaging-polarimetric measurement taken in 2002 reveal that (1) as noted in the literature, the polarization of 3C 323.1 is confined only to the continuum emission, I.e. the emission from the broad-line region is unpolarized; (2) the polarized flux spectra show evidence of a time-variable broad absorption feature in the wavelength range of the Balmer continuum and other recombination lines; (3) weak variability in the polarization position angle (PA) of ˜4°over a time-scale of 4-6 yr is observed and (4) the V-band total flux and the polarized flux show highly correlated variability over a time-scale of 1 yr. Taking the above-mentioned photometric and polarimetric variability properties and the results from previous studies into consideration, we propose a geometrical model for the polarization source in 3C 323.1, in which an equatorial absorbing region and an axi-asymmetric equatorial electron-scattering region are assumed to be located between the accretion disc and the broad-line region. The scattering/absorbing regions can perhaps be attributed to the accretion disc wind or flared disc surface, but further polarimetric monitoring observations for 3C 323.1 and other quasars with continuum-confined polarization are needed to probe the true physical origins of these regions.

Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor suppressor genes

PubMed Central

Chen, Kaifu; Chen, Zhong; Wu, Dayong; Zhang, Lili; Lin, Xueqiu; Su, Jianzhong; Rodriguez, Benjamin; Xi, Yuanxin; Xia, Zheng; Chen, Xi; Shi, Xiaobing; Wang, Qianben; Li, Wei

2016-01-01

Tumor suppressors are mostly defined by inactivating mutations in tumors, yet little is known about their epigenetic features in normal cells. Through integrative analysis of 1,134 genome-wide epigenetic profiles, mutations from >8,200 tumor-normal pairs, and our experimental data from clinical samples, we discovered broad H3K4me3 (wider than 4 kb) as the first epigenetic signature for tumor suppressors in normal cells. Broad H3K4me3 is associated with increased transcription elongation and enhancer activity together leading to exceptionally high gene expression, and is distinct from other broad epigenetic features, such as super-enhancers. Broad H3K4me3 conserved across normal cells may represent pan-cancer tumor suppressors, such as P53 and PTEN, whereas cell-type-specific broad H3K4me3 may indicate cell-identity genes and cell-type-specific tumor suppressors. Furthermore, widespread shortening of broad H3K4me3 in cancers is associated with repression of tumor suppressors. Together, the broad H3K4me3 epigenetic signature provides mutation-independent information for the discovery and characterization of novel tumor suppressors. PMID:26301496

Exploring possible relations between optical variability time scales and broad emission line shapes in AGN

NASA Astrophysics Data System (ADS)

Bon, Edi; Jovanović, Predrag; Marziani, Paola; Bon, Nataša; Otašević, Aleksandar

2018-06-01

Here we investigate the connection of broad emission line shapes and continuum light curve variability time scales of type-1 Active Galactic Nuclei (AGN). We developed a new model to describe optical broad emission lines as an accretion disk model of a line profile with additional ring emission. We connect ring radii with orbital time scales derived from optical light curves, and using Kepler's third law, we calculate mass of central supermassive black hole (SMBH). The obtained results for central black hole masses are in a good agreement with other methods. This indicates that the variability time scales of AGN may not be stochastic, but rather connected to the orbital time scales which depend on the central SMBH mass.

Polymorphic mountain whitefish (Prosopium williamsoni) in a coastal riverscape: size class assemblages, distribution, and habitat associations

USGS Publications Warehouse

Starr, James C.; Torgersen, Christian E.

2015-01-01

We compared the assemblage structure, spatial distributions, and habitat associations of mountain whitefish (Prosopium williamsoni) morphotypes and size classes. We hypothesised that morphotypes would have different spatial distributions and would be associated with different habitat features based on feeding behaviour and diet. Spatially continuous sampling was conducted over a broad extent (29 km) in the Calawah River, WA (USA). Whitefish were enumerated via snorkelling in three size classes: small (10–29 cm), medium (30–49 cm), and large (≥50 cm). We identified morphotypes based on head and snout morphology: a pinocchio form that had an elongated snout and a normal form with a blunted snout. Large size classes of both morphotypes were distributed downstream of small and medium size classes, and normal whitefish were distributed downstream of pinocchio whitefish. Ordination of whitefish assemblages with nonmetric multidimensional scaling revealed that normal whitefish size classes were associated with higher gradient and depth, whereas pinocchio whitefish size classes were positively associated with pool area, distance upstream, and depth. Reach-scale generalised additive models indicated that normal whitefish relative density was associated with larger substrate size in downstream reaches (R2 = 0.64), and pinocchio whitefish were associated with greater stream depth in the reaches farther upstream (R2 = 0.87). These results suggest broad-scale spatial segregation (1–10 km), particularly between larger and more phenotypically extreme individuals. These results provide the first perspective on spatial distributions and habitat relationships of polymorphic mountain whitefish.

Estimating ecological integrity in the interior Columbia River basin.

Treesearch

Thomas M. Quigley; Richard W. Haynes; Wendel J. Hann

2001-01-01

The adoption of ecosystem-based management strategies focuses attention on the need for broad scale estimates of ecological conditions; this poses two challenges for the science community: estimating broad scale ecosystem conditions from highly disparate data, often observed at different spatial scales, and interpreting these conditions relative to goals such as...

RELATION OF LANDSCAPE-SCALE ENVIRONMENTAL CHARACTERISTICS TO FISH ASSEMBLAGES IN THE UPPER FRENCH BROAD RIVER BASIN, NORTH CAROLINA

EPA Science Inventory

Fish assemblages at 16 sites in the upper French Broad river basin in North Carolina were related to environmental characteristics at the landscape scale, the scale at which management activities and decisions are most likely to occur. Indirect gradient analysis and subsequent re...

Social Cognition, Social Skill, and the Broad Autism Phenotype

ERIC Educational Resources Information Center

Sasson, Noah J.; Nowlin, Rachel B.; Pinkham, Amy E.

2013-01-01

Social-cognitive deficits differentiate parents with the "broad autism phenotype" from non-broad autism phenotype parents more robustly than other neuropsychological features of autism, suggesting that this domain may be particularly informative for identifying genetic and brain processes associated with the phenotype. The current study…

Using high spectral resolution spectrophotometry to study broad mineral absorption features on Mars

NASA Technical Reports Server (NTRS)

Blaney, D. L.; Crisp, D.

1993-01-01

Traditionally telescopic measurements of mineralogic absorption features have been made using relatively low to moderate (R=30-300) spectral resolution. Mineralogic absorption features tend to be broad so high resolution spectroscopy (R greater than 10,000) does not provide significant additional compositional information. Low to moderate resolution spectroscopy allows an observer to obtain data over a wide wavelength range (hundreds to thousands of wavenumbers) compared to the several wavenumber intervals that are collected using high resolution spectrometers. However, spectrophotometry at high resolution has major advantages over lower resolution spectroscopy in situations that are applicable to studies of the Martian surface, i.e., at wavelengths where relatively weak surface absorption features and atmospheric gas absorption features both occur.

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study

PubMed Central

Vickers, T. Winston; Ernest, Holly B.; Boyce, Walter M.

2017-01-01

The importance of examining multiple hierarchical levels when modeling resource use for wildlife has been acknowledged for decades. Multi-level resource selection functions have recently been promoted as a method to synthesize resource use across nested organizational levels into a single predictive surface. Analyzing multiple scales of selection within each hierarchical level further strengthens multi-level resource selection functions. We extend this multi-level, multi-scale framework to modeling resistance for wildlife by combining multi-scale resistance surfaces from two data types, genetic and movement. Resistance estimation has typically been conducted with one of these data types, or compared between the two. However, we contend it is not an either/or issue and that resistance may be better-modeled using a combination of resistance surfaces that represent processes at different hierarchical levels. Resistance surfaces estimated from genetic data characterize temporally broad-scale dispersal and successful breeding over generations, whereas resistance surfaces estimated from movement data represent fine-scale travel and contextualized movement decisions. We used telemetry and genetic data from a long-term study on pumas (Puma concolor) in a highly developed landscape in southern California to develop a multi-level, multi-scale resource selection function and a multi-level, multi-scale resistance surface. We used these multi-level, multi-scale surfaces to identify resource use patches and resistant kernel corridors. Across levels, we found puma avoided urban, agricultural areas, and roads and preferred riparian areas and more rugged terrain. For other landscape features, selection differed among levels, as did the scales of selection for each feature. With these results, we developed a conservation plan for one of the most isolated puma populations in the U.S. Our approach captured a wide spectrum of ecological relationships for a population, resulted in effective conservation planning, and can be readily applied to other wildlife species. PMID:28609466

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study.

PubMed

Zeller, Katherine A; Vickers, T Winston; Ernest, Holly B; Boyce, Walter M

2017-01-01

The importance of examining multiple hierarchical levels when modeling resource use for wildlife has been acknowledged for decades. Multi-level resource selection functions have recently been promoted as a method to synthesize resource use across nested organizational levels into a single predictive surface. Analyzing multiple scales of selection within each hierarchical level further strengthens multi-level resource selection functions. We extend this multi-level, multi-scale framework to modeling resistance for wildlife by combining multi-scale resistance surfaces from two data types, genetic and movement. Resistance estimation has typically been conducted with one of these data types, or compared between the two. However, we contend it is not an either/or issue and that resistance may be better-modeled using a combination of resistance surfaces that represent processes at different hierarchical levels. Resistance surfaces estimated from genetic data characterize temporally broad-scale dispersal and successful breeding over generations, whereas resistance surfaces estimated from movement data represent fine-scale travel and contextualized movement decisions. We used telemetry and genetic data from a long-term study on pumas (Puma concolor) in a highly developed landscape in southern California to develop a multi-level, multi-scale resource selection function and a multi-level, multi-scale resistance surface. We used these multi-level, multi-scale surfaces to identify resource use patches and resistant kernel corridors. Across levels, we found puma avoided urban, agricultural areas, and roads and preferred riparian areas and more rugged terrain. For other landscape features, selection differed among levels, as did the scales of selection for each feature. With these results, we developed a conservation plan for one of the most isolated puma populations in the U.S. Our approach captured a wide spectrum of ecological relationships for a population, resulted in effective conservation planning, and can be readily applied to other wildlife species.

Behavior of severely supercooled water drops impacting on superhydrophobic surfaces

NASA Astrophysics Data System (ADS)

Maitra, Tanmoy; Antonini, Carlo; Tiwari, Manish K.; Mularczyk, Adrian; Imeri, Zulkufli; Schoch, Philippe; Poulikakos, Dimos

2014-11-01

Surface icing, commonplace in nature and technology, has broad implications to daily life. To prevent surface icing, superhydrophobic surfaces/coatings with rationally controlled roughness features (both at micro and nano-scale) are considered to be a promising candidate. However, to fabricate/synthesize a high performance icephobic surface or coating, understanding the dynamic interaction between water and the surface during water drop impact in supercooled state is necessary. In this work, we investigate the water/substrate interaction using drop impact experiments down to -17°C. It is found that the resulting increased viscous effect of water at low temperature significantly affects all stages of drop dynamics such as maximum spreading, contact time and meniscus penetration into the superhydrophobic texture. Most interestingly, the viscous effect on the meniscus penetration into roughness feature leads to clear change in the velocity threshold for rebounding to sticking transition by 25% of supercooled drops. Swiss National Science Foundation (SNF) Grant 200021_135479.

Seedless Synthesis of Monodispersed Gold Nanorods with Remarkably High Yield: Synergistic Effect of Template Modification and Growth Kinetics Regulation.

PubMed

Liu, Kang; Bu, Yanru; Zheng, Yuanhui; Jiang, Xuchuan; Yu, Aibing; Wang, Huanting

2017-03-08

Gold nanorods (AuNRs) are versatile materials due to their broadly tunable optical properties associated with their anisotropic feature. Conventional seed-mediated synthesis is, however, not only limited by the operational complexity and over-sensitivity towards subtle changes of experimental conditions but also suffers from low yield (≈15 %). A facile seedless method is reported to overcome these challenges. Monodispersed AuNRs with high yield (≈100 %) and highly adjustable longitudinal surface plasmon resonance (LSPR) are reproducibly synthesized. The parameters that influence the AuNRs growth were thoroughly investigated in terms of growth kinetics and soft-template regulation, offering a better understanding of the template-based mechanism. The facile synthesis, broad tunability of LSRP, high reproducibility, high yield, and ease of scale-up make this method promising for the future mass production of monodispersed AuNRs for applications in catalysis, sensing, and biomedicine. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

The MMPI-2 Restructured Form Personality Psychopathology Five Scales: bridging DSM-5 Section 2 personality disorders and DSM-5 Section 3 personality trait dimensions.

PubMed

Finn, Jacob A; Arbisi, Paul A; Erbes, Christopher R; Polusny, Melissa A; Thuras, Paul

2014-01-01

This study examined in a college sample and a sample of non-treatment-seeking, trauma-exposed veterans the association between the MMPI-2 Restructured Form (MMPI-2-RF) Personality Psychopathology Five (PSY-5) Scales and DSM-5 Section 2 personality disorder (PD) criteria, the same system used in DSM-IV-TR, and the proposed broad personality trait dimensions contained in Section 3 of DSM-5. DSM-5 Section 2 PD symptoms were assessed using the SCID-II-PQ, and applying a replicated rational selection procedure to the SCID-II-PQ item pool, proxies for the DSM-5 Section 3 dimensions and select facets were constructed. The MMPI-2-RF PSY-5 scales demonstrated appropriate convergent and discriminant associations with both Section 2 PDs and Section 3 dimensions in both samples. These findings suggest the MMPI-2-RF PSY-5 scales can serve both conceptually and practically as a bridge between the DSM-5 Section 2 PD criteria and the DSM-5 Section 3 personality features.

Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism

NASA Astrophysics Data System (ADS)

Zielinski, Daniel C.; Jamshidi, Neema; Corbett, Austin J.; Bordbar, Aarash; Thomas, Alex; Palsson, Bernhard O.

2017-01-01

Malignant transformation is often accompanied by significant metabolic changes. To identify drivers underlying these changes, we calculated metabolic flux states for the NCI60 cell line collection and correlated the variance between metabolic states of these lines with their other properties. The analysis revealed a remarkably consistent structure underlying high flux metabolism. The three primary uptake pathways, glucose, glutamine and serine, are each characterized by three features: (1) metabolite uptake sufficient for the stoichiometric requirement to sustain observed growth, (2) overflow metabolism, which scales with excess nutrient uptake over the basal growth requirement, and (3) redox production, which also scales with nutrient uptake but greatly exceeds the requirement for growth. We discovered that resistance to chemotherapeutic drugs in these lines broadly correlates with the amount of glucose uptake. These results support an interpretation of the Warburg effect and glutamine addiction as features of a growth state that provides resistance to metabolic stress through excess redox and energy production. Furthermore, overflow metabolism observed may indicate that mitochondrial catabolic capacity is a key constraint setting an upper limit on the rate of cofactor production possible. These results provide a greater context within which the metabolic alterations in cancer can be understood.

An interdisciplinary analysis of multispectral satellite data for selected cover types in the Colorado mountains, using automatic data processing techniques

NASA Technical Reports Server (NTRS)

Hoffer, R. M. (Principal Investigator)

1974-01-01

The author has identified the following significant results. In the San Juan Mountains there exists a group of structural and topographic features which suggest a common origin. The relative positions of the San Juan Depression with the Silverton and Lake City Calderas indicate they are possibly on the edge of a large circular feature. Comparison with the 1:250,000 scale Durango Geologic Map reveals a series of radial and arcuate faults concentric with the major circular feature. Such a fracture pattern implies that the circular feature may represent the extent of a major domal uplift in the area. The uplift was very likely due to the sub-crustal emplacement of the parent magma of the San Juan volcanics and intrusives. The broad doming led to the formation of a zone of tensional ring fractures which acted as conduits of release for the magma and the eventual development of the various calderas. The ring fracturing was probably incomplete with hinging occurring in the southern and southwestern portions of the dome accounting for the lack of development of caldera structures in that portion of the area.

Longitudinal Validation of General and Specific Structural Features of Personality Pathology

PubMed Central

Wright, Aidan G.C.; Hopwood, Christopher J.; Skodol, Andrew E.; Morey, Leslie C.

2016-01-01

Theorists have long argued that personality disorder (PD) is best understood in terms of general impairments shared across the disorders as well as more specific instantiations of pathology. A model based on this theoretical structure was proposed as part of the DSM-5 revision process. However, only recently has this structure been subjected to formal quantitative evaluation, with little in the way of validation efforts via external correlates or prospective longitudinal prediction. We used the Collaborative Longitudinal Study of Personality Disorders dataset to: (1) estimate structural models that parse general from specific variance in personality disorder features, (2) examine patterns of growth in general and specific features over the course of 10 years, and (3) establish concurrent and dynamic longitudinal associations in PD features and a host of external validators including basic personality traits and psychosocial functioning scales. We found that general PD exhibited much lower absolute stability and was most strongly related to broad markers of psychosocial functioning, concurrently and longitudinally, whereas specific features had much higher mean stability and exhibited more circumscribed associations with functioning. However, both general and specific factors showed recognizable associations with normative and pathological traits. These results can inform efforts to refine the conceptualization and diagnosis of personality pathology. PMID:27819472

Scaling properties of European research units

PubMed Central

Jamtveit, Bjørn; Jettestuen, Espen; Mathiesen, Joachim

2009-01-01

A quantitative characterization of the scale-dependent features of research units may provide important insight into how such units are organized and how they grow. The relative importance of top-down versus bottom-up controls on their growth may be revealed by their scaling properties. Here we show that the number of support staff in Scandinavian research units, ranging in size from 20 to 7,800 staff members, is related to the number of academic staff by a power law. The scaling exponent of ≈1.30 is broadly consistent with a simple hierarchical model of the university organization. Similar scaling behavior between small and large research units with a wide range of ambitions and strategies argues against top-down control of the growth. Top-down effects, and externally imposed effects from changing political environments, can be observed as fluctuations around the main trend. The observed scaling law implies that cost-benefit arguments for merging research institutions into larger and larger units may have limited validity unless the productivity per academic staff and/or the quality of the products are considerably higher in larger institutions. Despite the hierarchical structure of most large-scale research units in Europe, the network structures represented by the academic component of such units are strongly antihierarchical and suboptimal for efficient communication within individual units. PMID:19625626

Vpliv topoloskih lastnosti kompleksnih mrez in dinamicnih lastnosti sklopljenih celicnih oscilatorjev na kolektivno dinamiko

NASA Astrophysics Data System (ADS)

Markovic, Rene

This doctor thesis is both theoretical and applicative. In the theoretical part of the thesis, we examine how the interplay of dynamical features of oscillators and structural properties of complex networks affect the collective behavior of the system. We show, that weakly dissipative and flexible oscillators synchronize best in a broad scale network topology, whereas on the other hand strongly dissipative and rigid oscillators exhibit maximal synchronization in a scale-free network topology. We provide an analytical explanation for this phenomenon and validate it by implementing various continuous as well as discrete mathematical models that exhibit different levels of dynamical complexity. In the continuation, we additionally investigate how speed of signal transmission in the network affects the collective dynamic of the system. Our results show that besides an optimal network topology, also an optimal information transmission speed exists, at which the system reaches the highest degree of global synchronization. In the second part we apply the findings and the methodology from our theoretical studies to the examination of the collective pancreatic beta cell activity in the islets of Langerhans, which represents the main mechanism for the regulation of blood glucose homeostasis by the secretion of the hormone insulin. We show that the beta cells dynamics is not synchronized on the global scale of the whole islets. Instead, the cells form local clusters of synchronized activity which tend to get less segregated under higher stimulatory glucose concentrations. Furthermore, higher glucose concentrations also lead to the presence of broad scale small world connectivity patterns in the functional beta cell network. The main findings thereby shed light on the physiology and collective behavior of the islets of Langerhans and point out the possibilities of pathological changes associated with changes in the intercellular communication pathways.

Resonance behaviour of whole-body averaged specific energy absorption rate (SAR) in the female voxel model, NAOMI

NASA Astrophysics Data System (ADS)

Dimbylow, Peter

2005-09-01

Finite-difference time-domain (FDTD) calculations have been performed of the whole-body averaged specific energy absorption rate (SAR) in a female voxel model, NAOMI, under isolated and grounded conditions from 10 MHz to 3 GHz. The 2 mm resolution voxel model, NAOMI, was scaled to a height of 1.63 m and a mass of 60 kg, the dimensions of the ICRP reference adult female. Comparison was made with SAR values from a reference male voxel model, NORMAN. A broad SAR resonance in the NAOMI values was found around 900 MHz and a resulting enhancement, up to 25%, over the values for the male voxel model, NORMAN. This latter result confirmed previously reported higher values in a female model. The effect of differences in anatomy was investigated by comparing values for 10-, 5- and 1-year-old phantoms rescaled to the ICRP reference values of height and mass which are the same for both sexes. The broad resonance in the NAOMI child values around 1 GHz is still a strong feature. A comparison has been made with ICNIRP guidelines. The ICNIRP occupational reference level provides a conservative estimate of the whole-body averaged SAR restriction. The linear scaling of the adult phantom using different factors in longitudinal and transverse directions, in order to match the ICRP stature and weight, does not exactly reproduce the anatomy of children. However, for public exposure the calculations with scaled child models indicate that the ICNIRP reference level may not provide a conservative estimate of the whole-body averaged SAR restriction, above 1.2 GHz for scaled 5- and 1-year-old female models, although any underestimate is by less than 20%.

Resonance behaviour of whole-body averaged specific energy absorption rate (SAR) in the female voxel model, NAOMI.

PubMed

Dimbylow, Peter

2005-09-07

Finite-difference time-domain (FDTD) calculations have been performed of the whole-body averaged specific energy absorption rate (SAR) in a female voxel model, NAOMI, under isolated and grounded conditions from 10 MHz to 3 GHz. The 2 mm resolution voxel model, NAOMI, was scaled to a height of 1.63 m and a mass of 60 kg, the dimensions of the ICRP reference adult female. Comparison was made with SAR values from a reference male voxel model, NORMAN. A broad SAR resonance in the NAOMI values was found around 900 MHz and a resulting enhancement, up to 25%, over the values for the male voxel model, NORMAN. This latter result confirmed previously reported higher values in a female model. The effect of differences in anatomy was investigated by comparing values for 10-, 5- and 1-year-old phantoms rescaled to the ICRP reference values of height and mass which are the same for both sexes. The broad resonance in the NAOMI child values around 1 GHz is still a strong feature. A comparison has been made with ICNIRP guidelines. The ICNIRP occupational reference level provides a conservative estimate of the whole-body averaged SAR restriction. The linear scaling of the adult phantom using different factors in longitudinal and transverse directions, in order to match the ICRP stature and weight, does not exactly reproduce the anatomy of children. However, for public exposure the calculations with scaled child models indicate that the ICNIRP reference level may not provide a conservative estimate of the whole-body averaged SAR restriction, above 1.2 GHz for scaled 5- and 1-year-old female models, although any underestimate is by less than 20%.

Advancing our understanding of the onshore propagation of tsunami bores over rough surfaces through numerical modeling

NASA Astrophysics Data System (ADS)

Marras, S.; Suckale, J.; Eguzkitza, B.; Houzeaux, G.; Vázquez, M.; Lesage, A. C.

2016-12-01

The propagation of tsunamis in the open ocean has been studied in detail with many excellent numerical approaches available to researchers. Our understanding of the processes that govern the onshore propagation of tsunamis is less advanced. Yet, the reach of tsunamis on land is an important predictor of the damage associated with a given event, highlighting the need to investigate the factors that govern tsunami propagation onshore. In this study, we specifically focus on understanding the effect of bottom roughness at a variety of scales. The term roughness is to be understood broadly, as it represents scales ranging from small features like rocks, to vegetation, up to the size of larger structures and topography. In this poster, we link applied mathematics, computational fluid dynamics, and tsunami physics to analyze the small scales features of coastal hydrodynamics and the effect of roughness on the motion of tsunamis as they run up a sloping beach and propagate inland. We solve the three-dimensional Navier-Stokes equations of incompressible flows with free surface, which is tracked by a level set function in combination with an accurate re-distancing scheme. We discretize the equations via linear finite elements for space approximation and fully implicit time integration. Stabilization is achieved via the variational multiscale method whereas the subgrid scales for our large eddy simulations are modeled using a dynamically adaptive Smagorinsky eddy viscosity. As the geometrical characteristics of roughness in this study vary greatly across different scales, we implement a scale-dependent representation of the roughness elements. We model the smallest sub-grid scale roughness features by the use of a properly defined law of the wall. Furthermore, we utilize a Manning formula to compute the shear stress at the boundary. As the geometrical scales become larger, we resolve the geometry explicitly and compute the effective volume drag introduced by large scale immersed bodies. This study is a necessary step to verify and validate our model before proceeding further into the simulation of sediment transport in turbulent free surface flows. The simulation of such problems requires a space and time-dependent viscosity to model the effect of solid bodies transported by the incoming flow on onshore tsunami propagation.

Defining the Optimal Region of Interest for Hyperemia Grading in the Bulbar Conjunctiva

PubMed Central

Sánchez Brea, María Luisa; Mosquera González, Antonio; Evans, Katharine; Pena-Verdeal, Hugo

2016-01-01

Conjunctival hyperemia or conjunctival redness is a symptom that can be associated with a broad group of ocular diseases. Its levels of severity are represented by standard photographic charts that are visually compared with the patient's eye. This way, the hyperemia diagnosis becomes a nonrepeatable task that depends on the experience of the grader. To solve this problem, we have proposed a computer-aided methodology that comprises three main stages: the segmentation of the conjunctiva, the extraction of features in this region based on colour and the presence of blood vessels, and, finally, the transformation of these features into grading scale values by means of regression techniques. However, the conjunctival segmentation can be slightly inaccurate mainly due to illumination issues. In this work, we analyse the relevance of different features with respect to their location within the conjunctiva in order to delimit a reliable region of interest for the grading. The results show that the automatic procedure behaves like an expert using only a limited region of interest within the conjunctiva. PMID:28096890

Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes.

PubMed

Chen, Kaifu; Chen, Zhong; Wu, Dayong; Zhang, Lili; Lin, Xueqiu; Su, Jianzhong; Rodriguez, Benjamin; Xi, Yuanxin; Xia, Zheng; Chen, Xi; Shi, Xiaobing; Wang, Qianben; Li, Wei

2015-10-01

Tumor suppressors are mostly defined by inactivating mutations in tumors, yet little is known about their epigenetic features in normal cells. Through integrative analysis of 1,134 genome-wide epigenetic profiles, mutations from >8,200 tumor-normal pairs and our experimental data from clinical samples, we discovered broad peaks for trimethylation of histone H3 at lysine 4 (H3K4me3; wider than 4 kb) as the first epigenetic signature for tumor suppressors in normal cells. Broad H3K4me3 is associated with increased transcription elongation and enhancer activity, which together lead to exceptionally high gene expression, and is distinct from other broad epigenetic features, such as super-enhancers. Genes with broad H3K4me3 peaks conserved across normal cells may represent pan-cancer tumor suppressors, such as TP53 and PTEN, whereas genes with cell type-specific broad H3K4me3 peaks may represent cell identity genes and cell type-specific tumor suppressors. Furthermore, widespread shortening of broad H3K4me3 peaks in cancers is associated with repression of tumor suppressors. Thus, the broad H3K4me3 epigenetic signature provides mutation-independent information for the discovery and characterization of new tumor suppressors.

Adélie penguin foraging location predicted by tidal regime switching.

PubMed

Oliver, Matthew J; Irwin, Andrew; Moline, Mark A; Fraser, William; Patterson, Donna; Schofield, Oscar; Kohut, Josh

2013-01-01

Penguin foraging and breeding success depend on broad-scale environmental and local-scale hydrographic features of their habitat. We investigated the effect of local tidal currents on a population of Adélie penguins on Humble Is., Antarctica. We used satellite-tagged penguins, an autonomous underwater vehicle, and historical tidal records to model of penguin foraging locations over ten seasons. The bearing of tidal currents did not oscillate daily, but rather between diurnal and semidiurnal tidal regimes. Adélie penguins foraging locations changed in response to tidal regime switching, and not to daily tidal patterns. The hydrography and foraging patterns of Adélie penguins during these switching tidal regimes suggest that they are responding to changing prey availability, as they are concentrated and dispersed in nearby Palmer Deep by variable tidal forcing on weekly timescales, providing a link between local currents and the ecology of this predator.

Adélie Penguin Foraging Location Predicted by Tidal Regime Switching

PubMed Central

Oliver, Matthew J.; Irwin, Andrew; Moline, Mark A.; Fraser, William; Patterson, Donna; Schofield, Oscar; Kohut, Josh

2013-01-01

Penguin foraging and breeding success depend on broad-scale environmental and local-scale hydrographic features of their habitat. We investigated the effect of local tidal currents on a population of Adélie penguins on Humble Is., Antarctica. We used satellite-tagged penguins, an autonomous underwater vehicle, and historical tidal records to model of penguin foraging locations over ten seasons. The bearing of tidal currents did not oscillate daily, but rather between diurnal and semidiurnal tidal regimes. Adélie penguins foraging locations changed in response to tidal regime switching, and not to daily tidal patterns. The hydrography and foraging patterns of Adélie penguins during these switching tidal regimes suggest that they are responding to changing prey availability, as they are concentrated and dispersed in nearby Palmer Deep by variable tidal forcing on weekly timescales, providing a link between local currents and the ecology of this predator. PMID:23383091

Water color and circulation southern Chesapeake Bay, part 1

NASA Technical Reports Server (NTRS)

Nichols, M. M.; Gordon, H. H.

1975-01-01

Satellite imagery from two EREP passes over the Rappahannock Estuary of the Chesapeake region is analyzed to chart colored water types, to delineate color boundaries and define circulatory patterns. Surface observations from boats and helicopters concurrent with Skylab overpass define the distributions of suspended sediment, transparency, temperature, salinity, phytoplankton, color of suspended material and optical ratio. Important features recorded by the imagery are a large-scale turbidity maximum and massive red tide blooms. Water movement is revealed by small-scale mixing patterns and tidal plumes of apparent sediment-laden water. The color patterns broadly reflect the bottom topography and the seaward gradient of suspended material between the river and the bay. Analyses of red, green and natural color photos by microdensitometry demonstrate the utility of charting water color types of potential use for managing estuarine water quality. The Skylab imagery is superior to aerial photography and surface observations for charting water color.

Multidimensional Scaling Analysis of the Dynamics of a Country Economy

PubMed Central

Mata, Maria Eugénia

2013-01-01

This paper analyzes the Portuguese short-run business cycles over the last 150 years and presents the multidimensional scaling (MDS) for visualizing the results. The analytical and numerical assessment of this long-run perspective reveals periods with close connections between the macroeconomic variables related to government accounts equilibrium, balance of payments equilibrium, and economic growth. The MDS method is adopted for a quantitative statistical analysis. In this way, similarity clusters of several historical periods emerge in the MDS maps, namely, in identifying similarities and dissimilarities that identify periods of prosperity and crises, growth, and stagnation. Such features are major aspects of collective national achievement, to which can be associated the impact of international problems such as the World Wars, the Great Depression, or the current global financial crisis, as well as national events in the context of broad political blueprints for the Portuguese society in the rising globalization process. PMID:24294132

A characteristic length scale causes anomalous size effects and boundary programmability in mechanical metamaterials

NASA Astrophysics Data System (ADS)

Coulais, Corentin; Kettenis, Chris; van Hecke, Martin

2018-01-01

The architecture of mechanical metamaterials is designed to harness geometry, nonlinearity and topology to obtain advanced functionalities such as shape morphing, programmability and one-way propagation. Although a purely geometric framework successfully captures the physics of small systems under idealized conditions, large systems or heterogeneous driving conditions remain essentially unexplored. Here we uncover strong anomalies in the mechanics of a broad class of metamaterials, such as auxetics, shape changers or topological insulators; a non-monotonic variation of their stiffness with system size, and the ability of textured boundaries to completely alter their properties. These striking features stem from the competition between rotation-based deformations--relevant for small systems--and ordinary elasticity, and are controlled by a characteristic length scale which is entirely tunable by the architectural details. Our study provides new vistas for designing, controlling and programming the mechanics of metamaterials.

Fast and Slow Precipitation Responses to Individual Climate Forcers: A PDRMIP Multimodel Study

NASA Technical Reports Server (NTRS)

Samset, B. H.; Myhre, G.; Forster, P.M.; Hodnebrog, O.; Andrews, T.; Faluvegi, G.; Flaschner, D.; Kasoar, M.; Kharin, V.; Kirkevag, A.;

Engineering nanoscale surface features to sustain microparticle rolling in flow.

PubMed

Kalasin, Surachate; Santore, Maria M

2015-05-26

Nanoscopic features of channel walls are often engineered to facilitate microfluidic transport, for instance when surface charge enables electro-osmosis or when grooves drive mixing. The dynamic or rolling adhesion of flowing microparticles on a channel wall holds potential to accomplish particle sorting or to selectively transfer reactive species or signals between the wall and flowing particles. Inspired by cell rolling under the direction of adhesion molecules called selectins, we present an engineered platform in which the rolling of flowing microparticles is sustained through the incorporation of entirely synthetic, discrete, nanoscale, attractive features into the nonadhesive (electrostatically repulsive) surface of a flow channel. Focusing on one example or type of nanoscale feature and probing the impact of broad systematic variations in surface feature loading and processing parameters, this study demonstrates how relatively flat, weakly adhesive nanoscale features, positioned with average spacings on the order of tens of nanometers, can produce sustained microparticle rolling. We further demonstrate how the rolling velocity and travel distance depend on flow and surface design. We identify classes of related surfaces that fail to support rolling and present a state space that identifies combinations of surface and processing variables corresponding to transitions between rolling, free particle motion, and arrest. Finally we identify combinations of parameters (surface length scales, particle size, flow rates) where particles can be manipulated with size-selectivity.

Ecology and geography of avian influenza (HPAI H5N1) transmission in the Middle East and northeastern Africa

PubMed Central

Williams, Richard AJ; Peterson, A Townsend

2009-01-01

Background The emerging highly pathogenic avian influenza strain H5N1 ("HPAI-H5N1") has spread broadly in the past decade, and is now the focus of considerable concern. We tested the hypothesis that spatial distributions of HPAI-H5N1 cases are related consistently and predictably to coarse-scale environmental features in the Middle East and northeastern Africa. We used ecological niche models to relate virus occurrences to 8 km resolution digital data layers summarizing parameters of monthly surface reflectance and landform. Predictive challenges included a variety of spatial stratification schemes in which models were challenged to predict case distributions in broadly unsampled areas. Results In almost all tests, HPAI-H5N1 cases were indeed occurring under predictable sets of environmental conditions, generally predicted absent from areas with low NDVI values and minimal seasonal variation, and present in areas with a broad range of and appreciable seasonal variation in NDVI values. Although we documented significant predictive ability of our models, even between our study region and West Africa, case occurrences in the Arabian Peninsula appear to follow a distinct environmental regime. Conclusion Overall, we documented a variable environmental "fingerprint" for areas suitable for HPAI-H5N1 transmission. PMID:19619336

Centrality evolution of the charged-particle pseudorapidity density over a broad pseudorapidity range in Pb-Pb collisions at √{sNN} = 2.76 TeV

NASA Astrophysics Data System (ADS)

Adam, J.; Adamová, D.; Aggarwal, M. M.; Aglieri Rinella, G.; Agnello, M.; Agrawal, N.; Ahammed, Z.; Ahn, S. U.; Aiola, S.; Akindinov, A.; Alam, S. N.; Aleksandrov, D.; Alessandro, B.; Alexandre, D.; Alfaro Molina, R.; Alici, A.; Alkin, A.; Almaraz, J. R. M.; Alme, J.; Alt, T.; Altinpinar, S.; Altsybeev, I.; Alves Garcia Prado, C.; Andrei, C.; Andronic, A.; Anguelov, V.; Anielski, J.; Antičić, T.; Antinori, F.; Antonioli, P.; Aphecetche, L.; Appelshäuser, H.; Arcelli, S.; Arnaldi, R.; Arnold, O. W.; Arsene, I. C.; Arslandok, M.; Audurier, B.; Augustinus, A.; Averbeck, R.; Azmi, M. D.; Badalà, A.; Baek, Y. W.; Bagnasco, S.; Bailhache, R.; Bala, R.; Baldisseri, A.; Baral, R. C.; Barbano, A. M.; Barbera, R.; Barile, F.; Barnaföldi, G. G.; Barnby, L. S.; Barret, V.; Bartalini, P.; Barth, K.; Bartke, J.; Bartsch, E.; Basile, M.; Bastid, N.; Basu, S.; Bathen, B.; Batigne, G.; Batista Camejo, A.; Batyunya, B.; Batzing, P. C.; Bearden, I. G.; Beck, H.; Bedda, C.; Behera, N. K.; Belikov, I.; Bellini, F.; Bello Martinez, H.; Bellwied, R.; Belmont, R.; Belmont-Moreno, E.; Belyaev, V.; Bencedi, G.; Beole, S.; Berceanu, I.; Bercuci, A.; Berdnikov, Y.; Berenyi, D.; Bertens, R. A.; Berzano, D.; Betev, L.; Bhasin, A.; Bhat, I. R.; Bhati, A. K.; Bhattacharjee, B.; Bhom, J.; Bianchi, L.; Bianchi, N.; Bianchin, C.; Bielčík, J.; Bielčíková, J.; Bilandzic, A.; Biswas, R.; Biswas, S.; Bjelogrlic, S.; Blair, J. T.; Blau, D.; Blume, C.; Bock, F.; Bogdanov, A.; Bøggild, H.; Boldizsár, L.; Bombara, M.; Book, J.; Borel, H.; Borissov, A.; Borri, M.; Bossú, F.; Botta, E.; Böttger, S.; Bourjau, C.; Braun-Munzinger, P.; Bregant, M.; Breitner, T.; Broker, T. A.; Browning, T. A.; Broz, M.; Brucken, E. J.; Bruna, E.; Bruno, G. E.; Budnikov, D.; Buesching, H.; Bufalino, S.; Buncic, P.; Busch, O.; Buthelezi, Z.; Butt, J. B.; Buxton, J. T.; Caffarri, D.; Cai, X.; Caines, H.; Calero Diaz, L.; Caliva, A.; Calvo Villar, E.; Camerini, P.; Carena, F.; Carena, W.; Carnesecchi, F.; Castillo Castellanos, J.; Castro, A. J.; Casula, E. A. R.; Ceballos Sanchez, C.; Cepila, J.; Cerello, P.; Cerkala, J.; Chang, B.; Chapeland, S.; Chartier, M.; Charvet, J. L.; Chattopadhyay, S.; Chattopadhyay, S.; Chelnokov, V.; Cherney, M.; Cheshkov, C.; Cheynis, B.; Chibante Barroso, V.; Chinellato, D. D.; Cho, S.; Chochula, P.; Choi, K.; Chojnacki, M.; Choudhury, S.; Christakoglou, P.; Christensen, C. H.; Christiansen, P.; Chujo, T.; Chung, S. U.; Cicalo, C.; Cifarelli, L.; Cindolo, F.; Cleymans, J.; Colamaria, F.; Colella, D.; Collu, A.; Colocci, M.; Conesa Balbastre, G.; Conesa del Valle, Z.; Connors, M. E.; Contreras, J. G.; Cormier, T. M.; Corrales Morales, Y.; Cortés Maldonado, I.; Cortese, P.; Cosentino, M. R.; Costa, F.; Crochet, P.; Cruz Albino, R.; Cuautle, E.; Cunqueiro, L.; Dahms, T.; Dainese, A.; Danu, A.; Das, D.; Das, I.; Das, S.; Dash, A.; Dash, S.; De, S.; De Caro, A.; de Cataldo, G.; de Conti, C.; de Cuveland, J.; De Falco, A.; De Gruttola, D.; De Marco, N.; De Pasquale, S.; Deisting, A.; Deloff, A.; Dénes, E.; Deplano, C.; Dhankher, P.; Di Bari, D.; Di Mauro, A.; Di Nezza, P.; Diaz Corchero, M. A.; Dietel, T.; Dillenseger, P.; Divià, R.; Djuvsland, Ø.; Dobrin, A.; Domenicis Gimenez, D.; Dönigus, B.; Dordic, O.; Drozhzhova, T.; Dubey, A. K.; Dubla, A.; Ducroux, L.; Dupieux, P.; Ehlers, R. J.; Elia, D.; Engel, H.; Epple, E.; Erazmus, B.; Erdemir, I.; Erhardt, F.; Espagnon, B.; Estienne, M.; Esumi, S.; Eum, J.; Evans, D.; Evdokimov, S.; Eyyubova, G.; Fabbietti, L.; Fabris, D.; Faivre, J.; Fantoni, A.; Fasel, M.; Feldkamp, L.; Feliciello, A.; Feofilov, G.; Ferencei, J.; Fernández Téllez, A.; Ferreiro, E. G.; Ferretti, A.; Festanti, A.; Feuillard, V. J. G.; Figiel, J.; Figueredo, M. A. S.; Filchagin, S.; Finogeev, D.; Fionda, F. M.; Fiore, E. M.; Fleck, M. G.; Floris, M.; Foertsch, S.; Foka, P.; Fokin, S.; Fragiacomo, E.; Francescon, A.; Frankenfeld, U.; Fuchs, U.; Furget, C.; Furs, A.; Fusco Girard, M.; Gaardhøje, J. J.; Gagliardi, M.; Gago, A. M.; Gallio, M.; Gangadharan, D. R.; Ganoti, P.; Gao, C.; Garabatos, C.; Garcia-Solis, E.; Gargiulo, C.; Gasik, P.; Gauger, E. F.; Germain, M.; Gheata, A.; Gheata, M.; Ghosh, P.; Ghosh, S. K.; Gianotti, P.; Giubellino, P.; Giubilato, P.; Gladysz-Dziadus, E.; Glässel, P.; Goméz Coral, D. M.; Gomez Ramirez, A.; Gonzalez, V.; González-Zamora, P.; Gorbunov, S.; Görlich, L.; Gotovac, S.; Grabski, V.; Grachov, O. A.; Graczykowski, L. K.; Graham, K. L.; Grelli, A.; Grigoras, A.; Grigoras, C.; Grigoriev, V.; Grigoryan, A.; Grigoryan, S.; Grinyov, B.; Grion, N.; Gronefeld, J. M.; Grosse-Oetringhaus, J. F.; Grossiord, J.-Y.; Grosso, R.; Guber, F.; Guernane, R.; Guerzoni, B.; Gulbrandsen, K.; Gunji, T.; Gupta, A.; Gupta, R.; Haake, R.; Haaland, Ø.; Hadjidakis, C.; Haiduc, M.; Hamagaki, H.; Hamar, G.; Harris, J. W.; Harton, A.; Hatzifotiadou, D.; Hayashi, S.; Heckel, S. T.; Heide, M.; Helstrup, H.; Herghelegiu, A.; Herrera Corral, G.; Hess, B. A.; Hetland, K. F.; Hillemanns, H.; Hippolyte, B.; Hosokawa, R.; Hristov, P.; Huang, M.; Humanic, T. J.; Hussain, N.; Hussain, T.; Hutter, D.; Hwang, D. S.; Ilkaev, R.; Inaba, M.; Ippolitov, M.; Irfan, M.; Ivanov, M.; Ivanov, V.; Izucheev, V.; Jacobs, P. M.; Jadhav, M. B.; Jadlovska, S.; Jadlovsky, J.; Jahnke, C.; Jakubowska, M. J.; Jang, H. J.; Janik, M. A.; Jayarathna, P. H. S. Y.; Jena, C.; Jena, S.; Jimenez Bustamante, R. T.; Jones, P. G.; Jung, H.; Jusko, A.; Kalinak, P.; Kalweit, A.; Kamin, J.; Kang, J. H.; Kaplin, V.; Kar, S.; Karasu Uysal, A.; Karavichev, O.; Karavicheva, T.; Karayan, L.; Karpechev, E.; Kebschull, U.; Keidel, R.; Keijdener, D. L. D.; Keil, M.; Mohisin Khan, M.; Khan, P.; Khan, S. A.; Khanzadeev, A.; Kharlov, Y.; Kileng, B.; Kim, D. W.; Kim, D. J.; Kim, D.; Kim, H.; Kim, J. S.; Kim, M.; Kim, M.; Kim, S.; Kim, T.; Kirsch, S.; Kisel, I.; Kiselev, S.; Kisiel, A.; Kiss, G.; Klay, J. L.; Klein, C.; Klein, J.; Klein-Bösing, C.; Klewin, S.; Kluge, A.; Knichel, M. L.; Knospe, A. G.; Kobayashi, T.; Kobdaj, C.; Kofarago, M.; Kollegger, T.; Kolojvari, A.; Kondratiev, V.; Kondratyeva, N.; Kondratyuk, E.; Konevskikh, A.; Kopcik, M.; Kour, M.; Kouzinopoulos, C.; Kovalenko, O.; Kovalenko, V.; Kowalski, M.; Koyithatta Meethaleveedu, G.; Králik, I.; Kravčáková, A.; Kretz, M.; Krivda, M.; Krizek, F.; Kryshen, E.; Krzewicki, M.; Kubera, A. M.; Kučera, V.; Kuhn, C.; Kuijer, P. G.; Kumar, A.; Kumar, J.; Kumar, L.; Kumar, S.; Kurashvili, P.; Kurepin, A.; Kurepin, A. B.; Kuryakin, A.; Kweon, M. J.; Kwon, Y.; La Pointe, S. L.; La Rocca, P.; Ladron de Guevara, P.; Lagana Fernandes, C.; Lakomov, I.; Langoy, R.; Lara, C.; Lardeux, A.; Lattuca, A.; Laudi, E.; Lea, R.; Leardini, L.; Lee, G. R.; Lee, S.; Lehas, F.; Lemmon, R. C.; Lenti, V.; Leogrande, E.; León Monzón, I.; León Vargas, H.; Leoncino, M.; Lévai, P.; Li, S.; Li, X.; Lien, J.; Lietava, R.; Lindal, S.; Lindenstruth, V.; Lippmann, C.; Lisa, M. A.; Ljunggren, H. M.; Lodato, D. F.; Loenne, P. I.; Loginov, V.; Loizides, C.; Lopez, X.; López Torres, E.; Lowe, A.; Luettig, P.; Lunardon, M.; Luparello, G.; Maevskaya, A.; Mager, M.; Mahajan, S.; Mahmood, S. M.; Maire, A.; Majka, R. D.; Malaev, M.; Maldonado Cervantes, I.; Malinina, L.; Mal'Kevich, D.; Malzacher, P.; Mamonov, A.; Manko, V.; Manso, F.; Manzari, V.; Marchisone, M.; Mareš, J.; Margagliotti, G. V.; Margotti, A.; Margutti, J.; Marín, A.; Markert, C.; Marquard, M.; Martin, N. A.; Martin Blanco, J.; Martinengo, P.; Martínez, M. I.; Martínez García, G.; Martinez Pedreira, M.; Mas, A.; Masciocchi, S.; Masera, M.; Masoni, A.; Massacrier, L.; Mastroserio, A.; Matyja, A.; Mayer, C.; Mazer, J.; Mazzoni, M. A.; Mcdonald, D.; Meddi, F.; Melikyan, Y.; Menchaca-Rocha, A.; Meninno, E.; Mercado Pérez, J.; Meres, M.; Miake, Y.; Mieskolainen, M. M.; Mikhaylov, K.; Milano, L.; Milosevic, J.; Minervini, L. M.; Mischke, A.; Mishra, A. N.; Miśkowiec, D.; Mitra, J.; Mitu, C. M.; Mohammadi, N.; Mohanty, B.; Molnar, L.; Montaño Zetina, L.; Montes, E.; Moreira De Godoy, D. A.; Moreno, L. A. P.; Moretto, S.; Morreale, A.; Morsch, A.; Muccifora, V.; Mudnic, E.; Mühlheim, D.; Muhuri, S.; Mukherjee, M.; Mulligan, J. D.; Munhoz, M. G.; Munzer, R. H.; Murray, S.; Musa, L.; Musinsky, J.; Naik, B.; Nair, R.; Nandi, B. K.; Nania, R.; Nappi, E.; Naru, M. U.; Natal da Luz, H.; Nattrass, C.; Nayak, K.; Nayak, T. K.; Nazarenko, S.; Nedosekin, A.; Nellen, L.; Ng, F.; Nicassio, M.; Niculescu, M.; Niedziela, J.; Nielsen, B. S.; Nikolaev, S.; Nikulin, S.; Nikulin, V.; Noferini, F.; Nomokonov, P.; Nooren, G.; Noris, J. C. C.; Norman, J.; Nyanin, A.; Nystrand, J.; Oeschler, H.; Oh, S.; Oh, S. K.; Ohlson, A.; Okatan, A.; Okubo, T.; Olah, L.; Oleniacz, J.; Oliveira Da Silva, A. C.; Oliver, M. H.; Onderwaater, J.; Oppedisano, C.; Orava, R.; Ortiz Velasquez, A.; Oskarsson, A.; Otwinowski, J.; Oyama, K.; Ozdemir, M.; Pachmayer, Y.; Pagano, P.; Paić, G.; Pal, S. K.; Pan, J.; Pandey, A. K.; Papcun, P.; Papikyan, V.; Pappalardo, G. S.; Pareek, P.; Park, W. J.; Parmar, S.; Passfeld, A.; Paticchio, V.; Patra, R. N.; Paul, B.; Peitzmann, T.; Pereira Da Costa, H.; Pereira De Oliveira Filho, E.; Peresunko, D.; Pérez Lara, C. E.; Perez Lezama, E.; Peskov, V.; Pestov, Y.; Petráček, V.; Petrov, V.; Petrovici, M.; Petta, C.; Piano, S.; Pikna, M.; Pillot, P.; Pinazza, O.; Pinsky, L.; Piyarathna, D. B.; Płoskoń, M.; Planinic, M.; Pluta, J.; Pochybova, S.; Podesta-Lerma, P. L. M.; Poghosyan, M. G.; Polichtchouk, B.; Poljak, N.; Poonsawat, W.; Pop, A.; Porteboeuf-Houssais, S.; Porter, J.; Pospisil, J.; Prasad, S. K.; Preghenella, R.; Prino, F.; Pruneau, C. A.; Pshenichnov, I.; Puccio, M.; Puddu, G.; Pujahari, P.; Punin, V.; Putschke, J.; Qvigstad, H.; Rachevski, A.; Raha, S.; Rajput, S.; Rak, J.; Rakotozafindrabe, A.; Ramello, L.; Rami, F.; Raniwala, R.; Raniwala, S.; Räsänen, S. S.; Rascanu, B. T.; Rathee, D.; Read, K. F.; Redlich, K.; Reed, R. J.; Rehman, A.; Reichelt, P.; Reidt, F.; Ren, X.; Renfordt, R.; Reolon, A. R.; Reshetin, A.; Revol, J.-P.; Reygers, K.; Riabov, V.; Ricci, R. A.; Richert, T.; Richter, M.; Riedler, P.; Riegler, W.; Riggi, F.; Ristea, C.; Rocco, E.; Rodríguez Cahuantzi, M.; Rodriguez Manso, A.; Røed, K.; Rogochaya, E.; Rohr, D.; Röhrich, D.; Romita, R.; Ronchetti, F.; Ronflette, L.; Rosnet, P.; Rossi, A.; Roukoutakis, F.; Roy, A.; Roy, C.; Roy, P.; Rubio Montero, A. J.; Rui, R.; Russo, R.; Ryabinkin, E.; Ryabov, Y.; Rybicki, A.; Sadovsky, S.; Šafařík, K.; Sahlmuller, B.; Sahoo, P.; Sahoo, R.; Sahoo, S.; Sahu, P. K.; Saini, J.; Sakai, S.; Saleh, M. A.; Salzwedel, J.; Sambyal, S.; Samsonov, V.; Šándor, L.; Sandoval, A.; Sano, M.; Sarkar, D.; Scapparone, E.; Scarlassara, F.; Schiaua, C.; Schicker, R.; Schmidt, C.; Schmidt, H. R.; Schuchmann, S.; Schukraft, J.; Schulc, M.; Schuster, T.; Schutz, Y.; Schwarz, K.; Schweda, K.; Scioli, G.; Scomparin, E.; Scott, R.; Šefčík, M.; Seger, J. E.; Sekiguchi, Y.; Sekihata, D.; Selyuzhenkov, I.; Senosi, K.; Senyukov, S.; Serradilla, E.; Sevcenco, A.; Shabanov, A.; Shabetai, A.; Shadura, O.; Shahoyan, R.; Shangaraev, A.; Sharma, A.; Sharma, M.; Sharma, M.; Sharma, N.; Shigaki, K.; Shtejer, K.; Sibiriak, Y.; Siddhanta, S.; Sielewicz, K. M.; Siemiarczuk, T.; Silvermyr, D.; Silvestre, C.; Simatovic, G.; Simonetti, G.; Singaraju, R.; Singh, R.; Singha, S.; Singhal, V.; Sinha, B. C.; Sinha, T.; Sitar, B.; Sitta, M.; Skaali, T. B.; Slupecki, M.; Smirnov, N.; Snellings, R. J. M.; Snellman, T. W.; Søgaard, C.; Song, J.; Song, M.; Song, Z.; Soramel, F.; Sorensen, S.; Sozzi, F.; Spacek, M.; Spiriti, E.; Sputowska, I.; Spyropoulou-Stassinaki, M.; Stachel, J.; Stan, I.; Stefanek, G.; Stenlund, E.; Steyn, G.; Stiller, J. H.; Stocco, D.; Strmen, P.; Suaide, A. A. P.; Sugitate, T.; Suire, C.; Suleymanov, M.; Suljic, M.; Sultanov, R.; Šumbera, M.; Szabo, A.; Szanto de Toledo, A.; Szarka, I.; Szczepankiewicz, A.; Szymanski, M.; Tabassam, U.; Takahashi, J.; Tambave, G. J.; Tanaka, N.; Tangaro, M. A.; Tarhini, M.; Tariq, M.; Tarzila, M. G.; Tauro, A.; Tejeda Muñoz, G.; Telesca, A.; Terasaki, K.; Terrevoli, C.; Teyssier, B.; Thäder, J.; Thomas, D.; Tieulent, R.; Timmins, A. R.; Toia, A.; Trogolo, S.; Trombetta, G.; Trubnikov, V.; Trzaska, W. H.; Tsuji, T.; Tumkin, A.; Turrisi, R.; Tveter, T. S.; Ullaland, K.; Uras, A.; Usai, G. L.; Utrobicic, A.; Vajzer, M.; Vala, M.; Valencia Palomo, L.; Vallero, S.; Van Der Maarel, J.; Van Hoorne, J. W.; van Leeuwen, M.; Vanat, T.; Vande Vyvre, P.; Varga, D.; Vargas, A.; Vargyas, M.; Varma, R.; Vasileiou, M.; Vasiliev, A.; Vauthier, A.; Vechernin, V.; Veen, A. M.; Veldhoen, M.; Velure, A.; Venaruzzo, M.; Vercellin, E.; Vergara Limón, S.; Vernet, R.; Verweij, M.; Vickovic, L.; Viesti, G.; Viinikainen, J.; Vilakazi, Z.; Villalobos Baillie, O.; Villatoro Tello, A.; Vinogradov, A.; Vinogradov, L.; Vinogradov, Y.; Virgili, T.; Vislavicius, V.; Viyogi, Y. P.; Vodopyanov, A.; Völkl, M. A.; Voloshin, K.; Voloshin, S. A.; Volpe, G.; von Haller, B.; Vorobyev, I.; Vranic, D.; Vrláková, J.; Vulpescu, B.; Vyushin, A.; Wagner, B.; Wagner, J.; Wang, H.; Wang, M.; Watanabe, D.; Watanabe, Y.; Weber, M.; Weber, S. G.; Weiser, D. F.; Wessels, J. P.; Westerhoff, U.; Whitehead, A. M.; Wiechula, J.; Wikne, J.; Wilde, M.; Wilk, G.; Wilkinson, J.; Williams, M. C. S.; Windelband, B.; Winn, M.; Yaldo, C. G.; Yang, H.; Yang, P.; Yano, S.; Yasar, C.; Yin, Z.; Yokoyama, H.; Yoo, I.-K.; Yoon, J. H.; Yurchenko, V.; Yushmanov, I.; Zaborowska, A.; Zaccolo, V.; Zaman, A.; Zampolli, C.; Zanoli, H. J. C.; Zaporozhets, S.; Zardoshti, N.; Zarochentsev, A.; Závada, P.; Zaviyalov, N.; Zbroszczyk, H.; Zgura, I. S.; Zhalov, M.; Zhang, H.; Zhang, X.; Zhang, Y.; Zhang, C.; Zhang, Z.; Zhao, C.; Zhigareva, N.; Zhou, D.; Zhou, Y.; Zhou, Z.; Zhu, H.; Zhu, J.; Zichichi, A.; Zimmermann, A.; Zimmermann, M. B.; Zinovjev, G.; Zyzak, M.

2016-03-01

The centrality dependence of the charged-particle pseudorapidity density measured with ALICE in Pb-Pb collisions at √{sNN} = 2.76 TeV over a broad pseudorapidity range is presented. This Letter extends the previous results reported by ALICE to more peripheral collisions. No strong change of the overall shape of charged-particle pseudorapidity density distributions with centrality is observed, and when normalised to the number of participating nucleons in the collisions, the evolution over pseudorapidity with centrality is likewise small. The broad pseudorapidity range (- 3.5 < η < 5) allows precise estimates of the total number of produced charged particles which we find to range from 162 ± 22(syst.) to 17170 ± 770(syst.) in 80-90% and 0-5% central collisions, respectively. The total charged-particle multiplicity is seen to approximately scale with the number of participating nucleons in the collision. This suggests that hard contributions to the charged-particle multiplicity are limited. The results are compared to models which describe dNch / dη at mid-rapidity in the most central Pb-Pb collisions and it is found that these models do not capture all features of the distributions.

Small-scale structure and the Lyman-α forest baryon acoustic oscillation feature

NASA Astrophysics Data System (ADS)

Hirata, Christopher M.

2018-02-01

The baryon-acoustic oscillation (BAO) feature in the Lyman-α forest is a key probe of the cosmic expansion rate at redshifts z ˜ 2.5, well before dark energy is believed to have become significant. A key advantage of the BAO as a standard ruler is that it is a sharp feature and hence is more robust against broad-band systematic effects than other cosmological probes. However, if the Lyman-α forest transmission is sensitive to the initial streaming velocity of the baryons relative to the dark matter, then the BAO peak position can be shifted. Here we investigate this sensitivity using a suite of hydrodynamic simulations of small regions of the intergalactic medium with a range of box sizes and physics assumptions; each simulation starts from initial conditions at the kinematic decoupling era (z ˜ 1059), undergoes a discrete change from neutral gas to ionized gas thermal evolution at reionization (z ˜ 8), and is finally processed into a Lyman-α forest transmitted flux cube. Streaming velocities suppress small-scale structure, leading to less violent relaxation after reionization. The changes in the gas distribution and temperature-density relation at low redshift are more subtle, due to the convergent temperature evolution in the ionized phase. The change in the BAO scale is estimated to be of the order of 0.12 per cent at z = 2.5; some of the major uncertainties and avenues for future improvement are discussed. The predicted streaming velocity shift would be a subdominant but not negligible effect (of order 0.26σ) for the upcoming DESI Lyman-α forest survey, and exceeds the cosmic variance floor.

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics.

PubMed

Weber, Marc; Teeling, Hanno; Huang, Sixing; Waldmann, Jost; Kassabgy, Mariette; Fuchs, Bernhard M; Klindworth, Anna; Klockow, Christine; Wichels, Antje; Gerdts, Gunnar; Amann, Rudolf; Glöckner, Frank Oliver

2011-05-01

Next-generation sequencing (NGS) technologies have enabled the application of broad-scale sequencing in microbial biodiversity and metagenome studies. Biodiversity is usually targeted by classifying 16S ribosomal RNA genes, while metagenomic approaches target metabolic genes. However, both approaches remain isolated, as long as the taxonomic and functional information cannot be interrelated. Techniques like self-organizing maps (SOMs) have been applied to cluster metagenomes into taxon-specific bins in order to link biodiversity with functions, but have not been applied to broad-scale NGS-based metagenomics yet. Here, we provide a novel implementation, demonstrate its potential and practicability, and provide a web-based service for public usage. Evaluation with published data sets mimicking varyingly complex habitats resulted into classification specificities and sensitivities of close to 100% to above 90% from phylum to genus level for assemblies exceeding 8 kb for low and medium complexity data. When applied to five real-world metagenomes of medium complexity from direct pyrosequencing of marine subsurface waters, classifications of assemblies above 2.5 kb were in good agreement with fluorescence in situ hybridizations, indicating that biodiversity was mostly retained within the metagenomes, and confirming high classification specificities. This was validated by two protein-based classifications (PBCs) methods. SOMs were able to retrieve the relevant taxa down to the genus level, while surpassing PBCs in resolution. In order to make the approach accessible to a broad audience, we implemented a feature-rich web-based SOM application named TaxSOM, which is freely available at http://www.megx.net/toolbox/taxsom. TaxSOM can classify reads or assemblies exceeding 2.5 kb with high accuracy and thus assists in linking biodiversity and functions in metagenome studies, which is a precondition to study microbial ecology in a holistic fashion.

Multivariate analysis of scale-dependent associations between bats and landscape structure

USGS Publications Warehouse

Gorresen, P.M.; Willig, M.R.; Strauss, R.E.

2005-01-01

The assessment of biotic responses to habitat disturbance and fragmentation generally has been limited to analyses at a single spatial scale. Furthermore, methods to compare responses between scales have lacked the ability to discriminate among patterns related to the identity, strength, or direction of associations of biotic variables with landscape attributes. We present an examination of the relationship of population- and community-level characteristics of phyllostomid bats with habitat features that were measured at multiple spatial scales in Atlantic rain forest of eastern Paraguay. We used a matrix of partial correlations between each biotic response variable (i.e., species abundance, species richness, and evenness) and a suite of landscape characteristics to represent the multifaceted associations of bats with spatial structure. Correlation matrices can correspond based on either the strength (i.e., magnitude) or direction (i.e., sign) of association. Therefore, a simulation model independently evaluated correspondence in the magnitude and sign of correlations among scales, and results were combined via a meta-analysis to provide an overall test of significance. Our approach detected both species-specific differences in response to landscape structure and scale dependence in those responses. This matrix-simulation approach has broad applicability to ecological situations in which multiple intercorrelated factors contribute to patterns in space or time. ?? 2005 by the Ecological Society of America.

USING BROAD-SCALE METRICS TO DEVELOP INDICATORS OF WATERSHED VULNERABILITY IN THE OZARK MOUNTAINS (USA)

EPA Science Inventory

Multiple broad-scale landscape metrics were tested as potential indicators of total phosphorus (TP) concentration, total ammonia (TA) concentration, and Escherichia coli (E. coli) bacteria count, among 244 sub-watersheds in the Ozark Mountains (USA). Indicator models were develop...

Gravel sediment routing from widespread, low-intensity landscape disturbance, Current River basin, Missouri

USGS Publications Warehouse

Jacobson, Robert B.; Gran, K.B.

1999-01-01

During the last 160 years, land-use changes in the Ozarks have had the potential to cause widespread, low-intensity delivery of excess amounts of gravel-sized sediment to stream channels. Previous studies have indicated that this excess gravel bedload is moving in wave-like forms through Ozarks drainage basins. The longitudinal, areal distribution of gravel bars along 160 km of the Current River, Missouri, was evaluated to determine the relative effects of valley-scale controls, tributary basin characteristics, and lagged sediment transport in creating areas of gravel accumulations. The longitudinal distribution of gravel-bar area shows a broad scale wave-like form with increases in gravel-bar area weakly associated with tributary junctions. Secondary peaks of gravel area with 1·8–4·1 km spacing (disturbance reaches) are superimposed on the broad form. Variations in valley width explain some, but not all, of the short-spacing variation in gravel-bar area. Among variables describing tributary drainage basin morphometry, present-day land use and geologic characteristics, only drainage area and road density relate even weakly to gravel-bar areal inventories. A simple, channel network-based sediment routing model shows that many of the features of the observed longitudinal gravel distribution can be replicated by uniform transport of sediment from widespread disturbances through a channel network. These results indicate that lagged sediment transport may have a dominant effect on the synoptic spatial distribution of gravel in Ozarks streams; present-day land uses are only weakly associated with present-day gravel inventories; and valley-scale characteristics have secondary controls on gravel accumulations in disturbance reaches.

Creating multithemed ecological regions for macroscale ecology: Testing a flexible, repeatable, and accessible clustering method

USGS Publications Warehouse

Cheruvelil, Kendra Spence; Yuan, Shuai; Webster, Katherine E.; Tan, Pang-Ning; Lapierre, Jean-Francois; Collins, Sarah M.; Fergus, C. Emi; Scott, Caren E.; Norton Henry, Emily; Soranno, Patricia A.; Filstrup, Christopher T.; Wagner, Tyler

2017-01-01

Understanding broad-scale ecological patterns and processes often involves accounting for regional-scale heterogeneity. A common way to do so is to include ecological regions in sampling schemes and empirical models. However, most existing ecological regions were developed for specific purposes, using a limited set of geospatial features and irreproducible methods. Our study purpose was to: (1) describe a method that takes advantage of recent computational advances and increased availability of regional and global data sets to create customizable and reproducible ecological regions, (2) make this algorithm available for use and modification by others studying different ecosystems, variables of interest, study extents, and macroscale ecology research questions, and (3) demonstrate the power of this approach for the research question—How well do these regions capture regional-scale variation in lake water quality? To achieve our purpose we: (1) used a spatially constrained spectral clustering algorithm that balances geospatial homogeneity and region contiguity to create ecological regions using multiple terrestrial, climatic, and freshwater geospatial data for 17 northeastern U.S. states (~1,800,000 km2); (2) identified which of the 52 geospatial features were most influential in creating the resulting 100 regions; and (3) tested the ability of these ecological regions to capture regional variation in water nutrients and clarity for ~6,000 lakes. We found that: (1) a combination of terrestrial, climatic, and freshwater geospatial features influenced region creation, suggesting that the oft-ignored freshwater landscape provides novel information on landscape variability not captured by traditionally used climate and terrestrial metrics; and (2) the delineated regions captured macroscale heterogeneity in ecosystem properties not included in region delineation—approximately 40% of the variation in total phosphorus and water clarity among lakes was at the regional scale. Our results demonstrate the usefulness of this method for creating customizable and reproducible regions for research and management applications.

Creating multithemed ecological regions for macroscale ecology: Testing a flexible, repeatable, and accessible clustering method.

PubMed

Cheruvelil, Kendra Spence; Yuan, Shuai; Webster, Katherine E; Tan, Pang-Ning; Lapierre, Jean-François; Collins, Sarah M; Fergus, C Emi; Scott, Caren E; Henry, Emily Norton; Soranno, Patricia A; Filstrup, Christopher T; Wagner, Tyler

2017-05-01

Understanding broad-scale ecological patterns and processes often involves accounting for regional-scale heterogeneity. A common way to do so is to include ecological regions in sampling schemes and empirical models. However, most existing ecological regions were developed for specific purposes, using a limited set of geospatial features and irreproducible methods. Our study purpose was to: (1) describe a method that takes advantage of recent computational advances and increased availability of regional and global data sets to create customizable and reproducible ecological regions, (2) make this algorithm available for use and modification by others studying different ecosystems, variables of interest, study extents, and macroscale ecology research questions, and (3) demonstrate the power of this approach for the research question-How well do these regions capture regional-scale variation in lake water quality? To achieve our purpose we: (1) used a spatially constrained spectral clustering algorithm that balances geospatial homogeneity and region contiguity to create ecological regions using multiple terrestrial, climatic, and freshwater geospatial data for 17 northeastern U.S. states (~1,800,000 km 2 ); (2) identified which of the 52 geospatial features were most influential in creating the resulting 100 regions; and (3) tested the ability of these ecological regions to capture regional variation in water nutrients and clarity for ~6,000 lakes. We found that: (1) a combination of terrestrial, climatic, and freshwater geospatial features influenced region creation, suggesting that the oft-ignored freshwater landscape provides novel information on landscape variability not captured by traditionally used climate and terrestrial metrics; and (2) the delineated regions captured macroscale heterogeneity in ecosystem properties not included in region delineation-approximately 40% of the variation in total phosphorus and water clarity among lakes was at the regional scale. Our results demonstrate the usefulness of this method for creating customizable and reproducible regions for research and management applications.

Vibrational tug-of-war: The pKA dependence of the broad vibrational features of strongly hydrogen-bonded carboxylic acids

NASA Astrophysics Data System (ADS)

Van Hoozen, Brian L.; Petersen, Poul B.

2018-04-01

Medium and strong hydrogen bonds give rise to broad vibrational features frequently spanning several hundred wavenumbers and oftentimes exhibiting unusual substructures. These broad vibrational features can be modeled from first principles, in a reduced dimensional calculation, that adiabatically separates low-frequency modes, which modulate the hydrogen bond length, from high-frequency OH stretch and bend modes that contribute to the vibrational structure. Previously this method was used to investigate the origin of an unusual vibrational feature frequently found in the spectra of dimers between carboxylic acids and nitrogen-containing aromatic bases that spans over 900 cm-1 and contains two broad peaks. It was found that the width of this feature largely originates from low-frequency modes modulating the hydrogen bond length and that the structure results from Fermi resonance interactions. In this report, we examine how these features change with the relative acid and base strength of the components as reflected by their aqueous pKA values. Dimers with large pKA differences are found to have features that can extend to frequencies below 1000 cm-1. The relationships between mean OH/NH frequency, aqueous pKA, and O-N distance are examined in order to obtain a more rigorous understanding of the origin and shape of the vibrational features. The mean OH/NH frequencies are found to correlate well with O-N distances. The lowest OH stretch frequencies are found in dimer geometries with O-N distances between 2.5 and 2.6 Å. At larger O-N distances, the hydrogen bonding interaction is not as strong, resulting in higher OH stretch frequencies. When the O-N distance is smaller than 2.5 Å, the limited space between the O and N determines the OH stretch frequency, which gives rise to frequencies that decrease with O-N distances. These two effects place a lower limit on the OH stretch frequency which is calculated to be near 700 cm-1. Understanding how the vibrational features of strongly hydrogen-bonded structures depend on the relative pKA and other structural parameters will guide studies of biological structures and analysis of proton transfer studies using photoacids.

An analysis of metropolitan land-use by machine processing of earth resources technology satellite data

NASA Technical Reports Server (NTRS)

Mausel, P. W.; Todd, W. J.; Baumgardner, M. F.

1976-01-01

A successful application of state-of-the-art remote sensing technology in classifying an urban area into its broad land use classes is reported. This research proves that numerous urban features are amenable to classification using ERTS multispectral data automatically processed by computer. Furthermore, such automatic data processing (ADP) techniques permit areal analysis on an unprecedented scale with a minimum expenditure of time. Also, classification results obtained using ADP procedures are consistent, comparable, and replicable. The results of classification are compared with the proposed U. S. G. S. land use classification system in order to determine the level of classification that is feasible to obtain through ERTS analysis of metropolitan areas.

QX MAN: Q and X file manipulation

NASA Technical Reports Server (NTRS)

Krein, Mark A.

1992-01-01

QX MAN is a grid and solution file manipulation program written primarily for the PARC code and the GRIDGEN family of grid generation codes. QX MAN combines many of the features frequently encountered in grid generation, grid refinement, the setting-up of initial conditions, and post processing. QX MAN allows the user to manipulate single block and multi-block grids (and their accompanying solution files) by splitting, concatenating, rotating, translating, re-scaling, and stripping or adding points. In addition, QX MAN can be used to generate an initial solution file for the PARC code. The code was written to provide several formats for input and output in order for it to be useful in a broad spectrum of applications.

Broad Low-Intensity Wings in the Emission-Line Profiles of Four Wolf-Rayet Galaxies

NASA Astrophysics Data System (ADS)

Méndez, David I.; Esteban, César

1997-10-01

High-resolution spectroscopic observations have been obtained for the Wolf-Rayet galaxies He 2-10, II Zw 40, POX 4, and Tol 35. Several subregions have been selected in each slit position in order to investigate possible spatial variations in the line profiles, radial velocities, and ionization conditions of the gas. The most remarkable feature of the spectra is the presence of asymmetric broad low-intensity wings in the profiles of the brightest emission lines. These spectral features are detected farther out from the star-forming knots, showing linear dimensions between 300 pc and 4.1 kpc. The maximum expansion velocity measured for this gas is between 120 and 340 km s-1 and appears to be quite constant along the slit for all the objects. Additional general properties of the spectra are (1) the quoted emission-line ratios are similar in the narrow and broad components, (2) no systematic differences of the behavior of the broad and narrow components have been found along the major and minor axis of the galaxies, and (3) the spatial distribution of the ionized gas is peaked centrally. Different mechanisms capable of producing the observed broad spectral features are discussed: cloud-cloud collisions in virialized gas, ``academic'' superbubbles, champagne flows, and superbubble blowout. It is concluded that superbubble blowout expanding over a cloudy medium can explain the observational properties in a reasonable manner.

Steady induction effects in geomagnetism. Part 1A: Steady motional induction of geomagnetic chaos

NASA Technical Reports Server (NTRS)

Voorhies, Coerte V.

1992-01-01

Geomagnetic effects of magnetic induction by hypothetically steady fluid motion and steady magnetic flux diffusion near the top of Earth's core are investigated using electromagnetic theory, simple magnetic earth models, and numerical experiments with geomagnetic field models. The problem of estimating a steady fluid velocity field near the top of Earth's core which induces the secular variation indicated by broad-scale models of the observed geomagnetic field is examined and solved. In Part 1, the steady surficial core flow estimation problem is solved in the context of the source-free mantle/frozen-flux core model. In the first paper (IA), the theory underlying such estimates is reviewed and some consequences of various kinematic and dynamic flow hypotheses are derived. For a frozen-flux core, fluid downwelling is required to change the mean square normal magnetic flux density averaged over the core-mantle boundary. For surficially geostrophic flow, downwelling implies poleward flow. The solution of the forward steady motional induction problem at the surface of a frozen-flux core is derived and found to be a fine, easily visualized example of deterministic chaos. Geomagnetic effects of statistically steady core surface flow may well dominate secular variation over several decades. Indeed, effects of persistent, if not steady, surficially geostrophic core flow are described which may help explain certain features of the present broad-scale geomagnetic field and perhaps paleomagnetic secular variation.

Recognition of emotional facial expressions and broad autism phenotype in parents of children diagnosed with autistic spectrum disorder.

PubMed

Kadak, Muhammed Tayyib; Demirel, Omer Faruk; Yavuz, Mesut; Demir, Türkay

2014-07-01

Research findings debate about features of broad autism phenotype. In this study, we tested whether parents of children with autism have problems recognizing emotional facial expression and the contribution of such an impairment to the broad phenotype of autism. Seventy-two parents of children with autistic spectrum disorder and 38 parents of control group participated in the study. Broad autism features was measured with Autism Quotient (AQ). Recognition of Emotional Face Expression Test was assessed with the Emotion Recognition Test, consisting a set of photographs from Ekman & Friesen's. In a two-tailed analysis of variance of AQ, there was a significant difference for social skills (F(1, 106)=6.095; p<.05). Analyses of variance revealed significant difference in the recognition of happy, surprised and neutral expressions (F(1, 106)=4.068, p=.046; F(1, 106)=4.068, p=.046; F(1, 106)=6.064, p=.016). According to our findings, social impairment could be considered a characteristic feature of BAP. ASD parents had difficulty recognizing neutral expressions, suggesting that ASD parents may have impaired recognition of ambiguous expressions as do autistic children. Copyright © 2014 Elsevier Inc. All rights reserved.

Protocols for vegetation and habitat monitoring with unmanned aerial vehicles: linking research to management on US public lands

USDA-ARS?s Scientific Manuscript database

Background/Question/Methods: Monitoring of the condition and trend of natural resources is critical for determining effectiveness of management actions and understanding ecosystem responses to broad-scale processes like climate change. While broad-scale remote sensing has generally improved the abi...

Spectral and Vertical Distribution Properties of Titan's Particulates from Thermal-IR CIRS Data: Physical Implications

NASA Technical Reports Server (NTRS)

Anderson, Carrie M.; Samuelson, Robert; Vinatier, Sandrine

2011-01-01

Analyses of far-IR spectra between 20 and 560/cm (500 and 18 micron) recorded by the Cassini Composite Infrared Spectrometer (CIRS) yield the spectral dependence and the vertical distribution of Titan's photochemical aerosol and stratospheric ice clouds. Below the stratopause (approx. 300 km) the aerosol appears to be incompletely mixed for the following reasons: 1) the altitude dependence of the aerosol mass absorption coefficient is larger at higher altitudes than at lower altitudes, 2} the aerosol scale height varies with altitude, which implies some kind of layering effect, and 3) the aerosol abundance varies with latitude. The spectral shape of the aerosol opacity appears to be independent in altitude and latitude below the stratopause, even though inhomogeneities in the abundance appear to be prevalent throughout this altitude region. This implies that aerosol chemistry is restricted to altitude regions above the stratopause, where pressures are less than approx 0.1 mbar. The aerosol exhibits an extremely broad emisSion feature with a spectral peak at 140/cm (71 micron), which is not evident in laboratory simulated Titan aerosols (tholin) that are created at pressures greater than 0.1 mbar. A strong broad emission feature centered roughly around 160 cm-1 corresponds very closely to those found in nitrile ice spectra. This feature is pervasive throughout the region from high northern to high southern latitudes. The inference of nitrile ices is consistent with the highly restricted altitude ranges over which these features are observed, and appear to be dominated by HCN and HC3N. At low and moderate latitudes these clouds are observed to be located between 60 and 100 km, whereas at high northern latitudes during northern winter these clouds are observed at altitudes between 150 and 165 km. The ubiquitous nature of these nitrile ice clouds is inconsistent with a simple meridional circulation concept, suggesting that the true dynamical situation is more complex.

Complex Plate Tectonic Features on Planetary Bodies: Analogs from Earth

NASA Astrophysics Data System (ADS)

Stock, J. M.; Smrekar, S. E.

2016-12-01

We review the types and scales of observations needed on other rocky planetary bodies (e.g., Mars, Venus, exoplanets) to evaluate evidence of present or past plate motions. Earth's plate boundaries were initially simplified into three basic types (ridges, trenches, and transform faults). Previous studies examined the Moon, Mars, Venus, Mercury and icy moons such as Europa, for evidence of features, including linear rifts, arcuate convergent zones, strike-slip faults, and distributed deformation (rifting or folding). Yet, several aspects merit further consideration. 1) Is the feature active or fossil? Earth's active mid ocean ridges are bathymetric highs, and seafloor depth increases on either side; whereas, fossil mid ocean ridges may be as deep as the surrounding abyssal plain with no major rift valley, although with a minor gravity low (e.g., Osbourn Trough, W. Pacific Ocean). Fossil trenches have less topographic relief than active trenches (e.g., the fossil trench along the Patton Escarpment, west of California). 2) On Earth, fault patterns of spreading centers depend on volcanism. Excess volcanism reduced faulting. Fault visibility increases as spreading rates slow, or as magmatism decreases, producing high-angle normal faults parallel to the spreading center. At magma-poor spreading centers, high resolution bathymetry shows low angle detachment faults with large scale mullions and striations parallel to plate motion (e.g., Mid Atlantic Ridge, Southwest Indian Ridge). 3) Sedimentation on Earth masks features that might be visible on a non-erosional planet. Subduction zones on Earth in areas of low sedimentation have clear trench -parallel faults causing flexural deformation of the downgoing plate; in highly sedimented subduction zones, no such faults can be seen, and there may be no bathymetric trench at all. 4) Areas of Earth with broad upwelling, such as the North Fiji Basin, have complex plate tectonic patterns with many individual but poorly linked ridge segments and transform faults. These details and scales of features should be considered in planning future surveys of altimetry, reflectance, magnetics, compositional, and gravity data from other planetary bodies aimed at understanding the link between a planet's surface and interior, whether via plate tectonics or other processes.

Systematic effects of foreground removal in 21-cm surveys of reionization

NASA Astrophysics Data System (ADS)

Petrovic, Nada; Oh, S. Peng

2011-05-01

21-cm observations have the potential to revolutionize our understanding of the high-redshift Universe. Whilst extremely bright radio continuum foregrounds exist at these frequencies, their spectral smoothness can be exploited to allow efficient foreground subtraction. It is well known that - regardless of other instrumental effects - this removes power on scales comparable to the survey bandwidth. We investigate associated systematic biases. We show that removing line-of-sight fluctuations on large scales aliases into suppression of the 3D power spectrum across a broad range of scales. This bias can be dealt with by correctly marginalizing over small wavenumbers in the 1D power spectrum; however, the unbiased estimator will have unavoidably larger variance. We also show that Gaussian realizations of the power spectrum permit accurate and extremely rapid Monte Carlo simulations for error analysis; repeated realizations of the fully non-Gaussian field are unnecessary. We perform Monte Carlo maximum likelihood simulations of foreground removal which yield unbiased, minimum variance estimates of the power spectrum in agreement with Fisher matrix estimates. Foreground removal also distorts the 21-cm probability distribution function (PDF), reducing the contrast between neutral and ionized regions, with potentially serious consequences for efforts to extract information from the PDF. We show that it is the subtraction of large-scale modes which is responsible for this distortion, and that it is less severe in the earlier stages of reionization. It can be reduced by using larger bandwidths. In the late stages of reionization, identification of the largest ionized regions (which consist of foreground emission only) provides calibration points which potentially allow recovery of large-scale modes. Finally, we also show that (i) the broad frequency response of synchrotron and free-free emission will smear out any features in the electron momentum distribution and ensure spectrally smooth foregrounds and (ii) extragalactic radio recombination lines should be negligible foregrounds.

A Novel Passive Millimeter Imager for Broad-Area Search - Final Report on Project PL09-NPMI-PD07 (PNNL-55180)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tedeschi, Jonathan R.; Bernacki, Bruce E.; Kelly, James F.

2011-12-31

This report describes research and development efforts toward a novel passive millimeter-wave (mm-wave) electromagnetic imaging device for broad-area search. It addresses the technical challenge of detecting anomalies that occupy a small fraction of a pixel. The purpose of the imager is to pinpoint suspicious locations for cuing subsequent higher-resolution imaging. The technical basis for the approach is to exploit thermal and polarization anomalies that distinguish man-made features from natural features.

Lobe-cleft instability in the buoyant gravity current generated by estuarine outflow

NASA Astrophysics Data System (ADS)

Horner-Devine, Alexander R.; Chickadel, C. Chris

2017-05-01

Gravity currents represent a broad class of geophysical flows including turbidity currents, powder avalanches, pyroclastic flows, sea breeze fronts, haboobs, and river plumes. A defining feature in many gravity currents is the formation of three-dimensional lobes and clefts along the front and researchers have sought to understand these ubiquitous geophysical structures for decades. The prevailing explanation is based largely on early laboratory and numerical model experiments at much smaller scales, which concluded that lobes and clefts are generated due to hydrostatic instability exclusively in currents propagating over a nonslip boundary. Recent studies suggest that frontal dynamics change as the flow scale increases, but no measurements have been made that sufficiently resolve the flow structure in full-scale geophysical flows. Here we use thermal infrared and acoustic imaging of a river plume to reveal the three-dimensional structure of lobes and clefts formed in a geophysical gravity current front. The observed lobes and clefts are generated at the front in the absence of a nonslip boundary, contradicting the prevailing explanation. The observed flow structure is consistent with an alternative formation mechanism, which predicts that the lobe scale is inherited from subsurface vortex structures.

Exoplanet Coronagraph Shaped Pupil Masks and Laboratory Scale Star Shade Masks: Design, Fabrication and Characterization

NASA Technical Reports Server (NTRS)

Balasubramanian, Kunjithapatha; White, Victor; Yee, Karl; Echternach, Pierre; Muller, Richard; Dickie, Matthew; Cady, Eric; Mejia Prada, Camilo; Ryan, Daniel; Poberezhskiy, Ilya;

Exoplanet coronagraph shaped pupil masks and laboratory scale star shade masks: design, fabrication and characterization

NASA Astrophysics Data System (ADS)

Balasubramanian, Kunjithapatham; White, Victor; Yee, Karl; Echternach, Pierre; Muller, Richard; Dickie, Matthew; Cady, Eric; Mejia Prada, Camilo; Ryan, Daniel; Poberezhskiy, Ilya; Zhou, Hanying; Kern, Brian; Riggs, A. J.; Zimmerman, Neil T.; Sirbu, Dan; Shaklan, Stuart; Kasdin, Jeremy

2015-09-01

Star light suppression technologies to find and characterize faint exoplanets include internal coronagraph instruments as well as external star shade occulters. Currently, the NASA WFIRST-AFTA mission study includes an internal coronagraph instrument to find and characterize exoplanets. Various types of masks could be employed to suppress the host star light to about 10-9 level contrast over a broad spectrum to enable the coronagraph mission objectives. Such masks for high contrast internal coronagraphic imaging require various fabrication technologies to meet a wide range of specifications, including precise shapes, micron scale island features, ultra-low reflectivity regions, uniformity, wave front quality, achromaticity, etc. We present the approaches employed at JPL to produce pupil plane and image plane coronagraph masks by combining electron beam, deep reactive ion etching, and black silicon technologies with illustrative examples of each, highlighting milestone accomplishments from the High Contrast Imaging Testbed (HCIT) at JPL and from the High Contrast Imaging Lab (HCIL) at Princeton University. We also present briefly the technologies applied to fabricate laboratory scale star shade masks.

Nano/micro-scale magnetophoretic devices for biomedical applications

NASA Astrophysics Data System (ADS)

Lim, Byeonghwa; Vavassori, Paolo; Sooryakumar, R.; Kim, CheolGi

2017-01-01

In recent years there have been tremendous advances in the versatility of magnetic shuttle technology using nano/micro-scale magnets for digital magnetophoresis. While the technology has been used for a wide variety of single-cell manipulation tasks such as selection, capture, transport, encapsulation, transfection, or lysing of magnetically labeled and unlabeled cells, it has also expanded to include parallel actuation and study of multiple bio-entities. The use of nano/micro-patterned magnetic structures that enable remote control of the applied forces has greatly facilitated integration of the technology with microfluidics, thereby fostering applications in the biomedical arena. The basic design and fabrication of various scaled magnets for remote manipulation of individual and multiple beads/cells, and their associated energies and forces that underlie the broad functionalities of this approach, are presented. One of the most useful features enabled by such advanced integrated engineering is the capacity to remotely tune the magnetic field gradient and energy landscape, permitting such multipurpose shuttles to be implemented within lab-on-chip platforms for a wide range of applications at the intersection of cellular biology and biotechnology.

ARC-1979-AC79-7095

NASA Image and Video Library

1979-07-11

Range : 312, 000 kilometers (195,000 miles) This photo of Ganymede (Ice Giant) was taken from Voyager 2 and shows features down to about 5 to 6 kilometers across. Different types of terrain common on Ganymede's surface are visible. The boundary of the largest region of dark ancient terrain on Ganymede can be seen to the east (right), revealing some of the light linear features which may be all that remains of a large ancient impact structure similar to the large ring structure on Callisto. The broad light regions running through the image are the typical grooved structures seen within another example of what might be evidence of large scale lateral motion in Ganymede's crust. The band of grooved terrain (about 100 kilometers wide) in this region appears to be offset by 50 kilometers or more on the left hand edge by a linear feature perpendicular to it. A feature similar to this one was previously discovered by Voyager 1. These are the first clear examples of strike-slip style faulting on any planet other than Earth. Many examples of craters of all ages can be seen in this image, ranging from fresh, bright ray craters to large, subdued circular markings thought to be the 'scars' of large ancient impacts that have been flatteded by glacier-like flows.

Recent progress of quantum cascade laser research from 3 to 12  μm at the Center for Quantum Devices [Invited].

PubMed

Razeghi, Manijeh; Zhou, Wenjia; Slivken, Steven; Lu, Quan-Yong; Wu, Donghai; McClintock, Ryan

2017-11-01

The quantum cascade laser (QCL) is becoming the leading laser source in the mid-infrared (mid-IR) range, which contains two atmospheric transmission windows and many molecular fingerprint absorption features. Since its first demonstration in 1994, the QCL has undergone tremendous development in terms of the output power, wall plug efficiency, wavelength coverage, tunability and beam quality. At the Center for Quantum Devices, we have demonstrated high-power continuous wave operation of QCLs covering a wide wavelength range from 3 to 12 μm, with power output up to 5.1 W at room temperature. Recent research has resulted in power scaling in pulsed mode with up to 203 W output, electrically tunable QCLs based on monolithic sampled grating design, heterogeneous QCLs with a broad spectral gain, broadly tunable on-chip beam-combined QCLs, QCL-based mid-IR frequency combs, and fundamental mode surface emitting quantum cascade ring lasers. The developed QCLs will be the basis for a number of next-generation spectroscopy and sensing systems.

Habitat classification modelling with incomplete data: Pushing the habitat envelope

Treesearch

Phoebe L. Zarnetske; Thomas C. Edwards; Gretchen G. Moisen

2007-01-01

Habitat classification models (HCMs) are invaluable tools for species conservation, land-use planning, reserve design, and metapopulation assessments, particularly at broad spatial scales. However, species occurrence data are often lacking and typically limited to presence points at broad scales. This lack of absence data precludes the use of many statistical...

Socioeconomic evaluation of broad-scale land management strategies.

Treesearch

Lisa K. Crone; Richard W. Haynes

2001-01-01

This paper examines the socioeconomic effects of alternative management strategies for Forest Service and Bureau of Land Management lands in the interior Columbia basin. From a broad-scale perspective, there is little impact or variation between alternatives in terms of changes in total economic activity or social conditions in the region. However, adopting a finer...

Presidential Address: Turbulent magnetic fields in the Sun

NASA Astrophysics Data System (ADS)

Weiss, Nigel

2001-06-01

Nigel Weiss recounts his Presidential Address 2001, given to the RAS A&G Ordinary Meeting on 9 February 2001. Recent high-resolution observations, from the ground and from space, have revealed the fine structure of magnetic features at the surface of the Sun. At the same time, advances in computing power have at last made it possible to develop models of turbulent magnetoconvection that can be related to these observations. The key features of flux emergence and annihilation, as observed by the MDI experiment on SOHO, are reproduced in kinematic calculations, while three-dimensional numerical experiments reveal the dynamical processes that are involved. The pattern of convection depends on the strength of the magnetic field: as the mean field decreases, slender rising plumes give way to a regime where magnetic flux is separated from the motion and then to one where locally intense magnetic fields nestle between broad and vigorously convecting plumes. Moreover, turbulent convection is itself able to act as a small-scale dynamo, generating disordered fields near the solar surface.

Long-term scale adaptive tracking with kernel correlation filters

NASA Astrophysics Data System (ADS)

Wang, Yueren; Zhang, Hong; Zhang, Lei; Yang, Yifan; Sun, Mingui

2018-04-01

Object tracking in video sequences has broad applications in both military and civilian domains. However, as the length of input video sequence increases, a number of problems arise, such as severe object occlusion, object appearance variation, and object out-of-view (some portion or the entire object leaves the image space). To deal with these problems and identify the object being tracked from cluttered background, we present a robust appearance model using Speeded Up Robust Features (SURF) and advanced integrated features consisting of the Felzenszwalb's Histogram of Oriented Gradients (FHOG) and color attributes. Since re-detection is essential in long-term tracking, we develop an effective object re-detection strategy based on moving area detection. We employ the popular kernel correlation filters in our algorithm design, which facilitates high-speed object tracking. Our evaluation using the CVPR2013 Object Tracking Benchmark (OTB2013) dataset illustrates that the proposed algorithm outperforms reference state-of-the-art trackers in various challenging scenarios.

Searching for MeV-scale gauge bosons with IceCube

DOE PAGES

DiFranzo, Anthony; Hooper, Dan

2015-11-05

Light gauge bosons can lead to resonant interactions between high-energy astrophysical neutrinos and the cosmic neutrino background. We study this possibility in detail, considering the ability of IceCube to probe such scenarios. We also find the most dramatic effects in models with a very light Z' (m Z'≲10 MeV), which can induce a significant absorption feature at E ν~5–10 TeV×(m Z'/MeV) 2. In the case of the inverted hierarchy and a small sum of neutrino masses, such a light Z' can result in a broad and deep spectral feature at ~0.1–10 PeV×(m Z'/MeV) 2. Current IceCube data already excludes thismore » case for a Z' lighter than a few MeV and couplings greater than g~10 -4. Furthermore, we emphasize that the ratio of neutrino flavors observed by IceCube can be used to further increase their sensitivity to Z' models and to other exotic physics scenarios.« less

Auxiliary-field quantum Monte Carlo simulations of neutron matter in chiral effective field theory.

PubMed

Wlazłowski, G; Holt, J W; Moroz, S; Bulgac, A; Roche, K J

2014-10-31

We present variational Monte Carlo calculations of the neutron matter equation of state using chiral nuclear forces. The ground-state wave function of neutron matter, containing nonperturbative many-body correlations, is obtained from auxiliary-field quantum Monte Carlo simulations of up to about 340 neutrons interacting on a 10(3) discretized lattice. The evolution Hamiltonian is chosen to be attractive and spin independent in order to avoid the fermion sign problem and is constructed to best reproduce broad features of the chiral nuclear force. This is facilitated by choosing a lattice spacing of 1.5 fm, corresponding to a momentum-space cutoff of Λ=414  MeV/c, a resolution scale at which strongly repulsive features of nuclear two-body forces are suppressed. Differences between the evolution potential and the full chiral nuclear interaction (Entem and Machleidt Λ=414  MeV [L. Coraggio et al., Phys. Rev. C 87, 014322 (2013).

Aesthetics-based classification of geological structures in outcrops for geotourism purposes: a tentative proposal

NASA Astrophysics Data System (ADS)

Mikhailenko, Anna V.; Nazarenko, Olesya V.; Ruban, Dmitry A.; Zayats, Pavel P.

2017-03-01

The current growth in geotourism requires an urgent development of classifications of geological features on the basis of criteria that are relevant to tourist perceptions. It appears that structure-related patterns are especially attractive for geotourists. Consideration of the main criteria by which tourists judge beauty and observations made in the geodiversity hotspot of the Western Caucasus allow us to propose a tentative aesthetics-based classification of geological structures in outcrops, with two classes and four subclasses. It is possible to distinguish between regular and quasi-regular patterns (i.e., striped and lined and contorted patterns) and irregular and complex patterns (paysage and sculptured patterns). Typical examples of each case are found both in the study area and on a global scale. The application of the proposed classification permits to emphasise features of interest to a broad range of tourists. Aesthetics-based (i.e., non-geological) classifications are necessary to take into account visions and attitudes of visitors.

Episodic HI and OI in the Saturn System

NASA Astrophysics Data System (ADS)

Melin, Henrik; Shemansky, D.

2007-10-01

A transient event in Cassini UVIS imaging of atomic hydrogen in the Saturn magnetosphere has been found in pre-SOI exposures obtained on May 18, 2004. The event occurred at 2.7 ± 0.2 RS in the orbital plane on the subsolar side of the planet in the 1.5 hour interval between exposures, and decayed inside the 17 hour interval to the next exposure. The time scale indicates that the gas was produced well above the escape velocity (0.6 eV/atom). Atomic oxygen in the magnetosphere also shows variability in abundance, but measurement time-scale is limited to a minimum to 2 weeks, compared to hours for the measurement of atomic hydrogen. The brightness of the flash object is estimated at 300 R in H Lya, compared to 1000 R for the Saturn dayglow. The FWHM latitudinal size of the feature is 0.8 RS(pixel size 0.38 RS ) with a density of 2500 atoms cm-3. The total population in the exposure is estimated to be 6 X 1032 atoms (total of 2. X 1035 magnetospheric H atoms). Enceladus has been assumed to be the major source of oxygen in the magnetosphere based on measurements of the recently discovered plume. The source of atomic hydrogen is evidently more complicated, showing evidence that the Saturn atmosphere delivers most of the broadly distributed HI in the magnetosphere. The Cassini UVIS images, however, show a persistent narrow HI torus near 3 RS above the broad background, where the flash reported here is located. The OI in UVIS images is in an irregular asymmetric distribution showing peak emissions positioned from 2 to 4 RS depending on time of observation. The properties of these features indicate Enceladus is not the only strong source of neutral gas in the magnetosphere. This work is supported by the Cassini Program.

Suzaku Observations Of Near-relativistic Outflows In The Bal Quasar APM 08279+5255.

NASA Astrophysics Data System (ADS)

Saez, Cristian; Chartas, G.; Brandt, N.

2009-12-01

We present results from three Suzaku observations of the z =3.91 gravitationally lensed broad absorption line quasar APM 08279+5255. We detect strong and broad absorption at rest-frame energies of <2 keV (low-energy) and 7-12 keV (high-energy). The detection of these features confirms the results of previous long-exposure (80-90 ks) Chandra and XMM-Newton observations. The low and high-energy absorption is detected in both the back-illuminated (BI) and front-illuminated (FI) Suzaku XIS spectra (with an F-test significance of <99%). We interpret the low-energy absorption as arising from a low ionization absorber with logNH 23 and the high-energy absorption as due to lines arising from highly ionized iron in a near-relativistic outflowing wind. Assuming this interpretation we find that the velocities in the outflow range between 0.1c and 0.6c. We constrain the angle between the outflow direction of the X-ray absorber and our line of sight to be <36 degrees. We also detect possible variability of the absorption lines (at the <99.9% and <98% significance levels in the FI and BI spectra, respectively) with a rest-frame time scale of 1 month. Assuming that the detected high-energy absorption features arise from FeXXV, we estimate that the fraction of the total bolometric energy injected over the quasar's lifetime into the intergalactic medium in the form of kinetic energy to be >10%.

The Mysterious 6565 Å Absorption Feature of the Galactic Halo

NASA Astrophysics Data System (ADS)

Sethi, Shiv K.; Shchekinov, Yuri; Nath, Biman B.

2017-12-01

We consider various possible scenarios to explain the recent observation of what has been called a broad Hα absorption in our Galactic halo, with peak optical depth τ ≃ 0.01 and equivalent width W≃ 0.17 \\mathringA . We show that the absorbed feature cannot arise from the circumgalactic and ISM Hα absorption. As the observed absorption feature is quite broad ({{Δ }}λ ≃ 30 \\mathringA ), we also consider CNO lines that lie close to Hα as possible alternatives to explain the feature. We show that such lines could also not account for the observed feature. Instead, we suggest that it could arise from diffuse interstellar bands (DIBs) carriers or polyaromatic hydrocarbons (PAHs) absorption. While we identify several such lines close to the Hα transition, we are unable to determine the molecule responsible for the observed feature, partly because of selection effects that prevent us from identifying DIBs/PAHs features close to Hα using local observations. Deep integration of a few extragalactic sources with high spectral resolution might allow us to distinguish between different possible explanations.

Broad fibrovascular cores may not be an exclusively benign feature in papillary lesions of the breast: a cautionary note.

PubMed

Yamaguchi, Rin; Tanaka, Maki; Tse, Gary M; Yamaguchi, Miki; Terasaki, Hiroshi; Nomura, Yoriko; Takenaka, Miki; Naito, Yoshiki; Akiba, Jun; Yano, Hirohisa

2014-03-01

A prominent fibrovascular stromal core is one of the widely accepted histological features of breast papillomas, but some papillary carcinomas also show such broad fibrovascular cores, leading to confusion in diagnosis, particularly in needle biopsy specimens. We investigated the histological characteristics of papillary lesions, focusing on broad fibrovascular cores and their relationship with the architectural patterns. Among 185 cases of needle biopsies of papillomas and papillary carcinomas, the number of cases with broad fibrovascular cores in each group was compared. The broad fibrovascular core density in the subsequently resected specimens was evaluated and compared between papillary predominant pattern (papillary structures >80% of tumours) and mixed pattern (papillary, solid, cribriform and others) within the lesions. Significantly more papillary carcinomas than papillomas and B3 atypical papillary lesions had broad fibrovascular cores (p=0.0091 and p=0.0164, respectively). The papillary predominant pattern was more prominent in carcinomas than in papillomas in the needle biopsies (p=0.048) and showed the same tendency in the resections (p=0.058). The broad fibrovascular core density was significantly lower in the 18 papillomas than in the 37 papillary carcinomas (p=0.0079) and was not significantly different between the papillary predominant and mixed patterns in carcinomas and papillomas. Broad fibrovascular cores in mammary papillary lesions are not specific for papillomas, as they are also present focally in papillary carcinomas. As the frequency of papillary carcinoma with broad fibrovascular cores is relatively high, caution in diagnosis has to be exercised, especially in needle biopsy specimens.

Incorporating remotely sensed tree canopy cover data into broad scale assessments of wildlife habitat distribution and conservation

Treesearch

Sebastian Martinuzzi; Lee A. Vierling; William A. Gould; Kerri T. Vierling; Andrew T. Hudak

2009-01-01

Remote sensing provides critical information for broad scale assessments of wildlife habitat distribution and conservation. However, such efforts have been typically unable to incorporate information about vegetation structure, a variable important for explaining the distribution of many wildlife species. We evaluated the consequences of incorporating remotely sensed...

Artificial light at night confounds broad-scale habitat use by migrating birds

USGS Publications Warehouse

McLaren, James D.; Buler, Jeffrey J.; Schreckengost, Tim; Smolinsky, Jaclyn A.; Boone, Matthew; van Loon, E. Emiel; Dawson, Deanna K.; Walters, Eric L.

2018-01-01

With many of the world's migratory bird populations in alarming decline, broad-scale assessments of responses to migratory hazards may prove crucial to successful conservation efforts. Most birds migrate at night through increasingly light-polluted skies. Bright light sources can attract airborne migrants and lead to collisions with structures, but might also influence selection of migratory stopover habitat and thereby acquisition of food resources. We demonstrate, using multi-year weather radar measurements of nocturnal migrants across the northeastern U.S., that autumnal migrant stopover density increased at regional scales with proximity to the brightest areas, but decreased within a few kilometers of brightly-lit sources. This finding implies broad-scale attraction to artificial light while airborne, impeding selection for extensive forest habitat. Given that high-quality stopover habitat is critical to successful migration, and hindrances during migration can decrease fitness, artificial lights present a potentially heightened conservation concern for migratory bird populations.

Daughter and her mildly affected father with Keipert syndrome.

PubMed

Dumic, Miroslav; Kokic, Durda Dovzak; Matic, Toni; Potocki, Kristina

2006-11-15

A 10-year-old girl with characteristic features of Keipert syndrome (broad terminal phalanges, especially of the thumb and hallux, sensorineural deafness, unusual facial features, large head circumference, maxillary hypoplasia, hoarse voice) and her mildly affected father (broad terminal phalanges, especially of the thumb and hallux, large head circumference, maxillary hypoplasia, and hoarse voice) are presented. The girl is the first reported female with this rare syndrome to date, and the fact that she probably inherited the disease from her father suggests an autosomal dominant pattern of inheritance. (c) 2006 Wiley-Liss, Inc.

Additive Manufacturing of Metal Structures at the Micrometer Scale.

PubMed

Hirt, Luca; Reiser, Alain; Spolenak, Ralph; Zambelli, Tomaso

2017-05-01

Currently, the focus of additive manufacturing (AM) is shifting from simple prototyping to actual production. One driving factor of this process is the ability of AM to build geometries that are not accessible by subtractive fabrication techniques. While these techniques often call for a geometry that is easiest to manufacture, AM enables the geometry required for best performance to be built by freeing the design process from restrictions imposed by traditional machining. At the micrometer scale, the design limitations of standard fabrication techniques are even more severe. Microscale AM thus holds great potential, as confirmed by the rapid success of commercial micro-stereolithography tools as an enabling technology for a broad range of scientific applications. For metals, however, there is still no established AM solution at small scales. To tackle the limited resolution of standard metal AM methods (a few tens of micrometers at best), various new techniques aimed at the micrometer scale and below are presently under development. Here, we review these recent efforts. Specifically, we feature the techniques of direct ink writing, electrohydrodynamic printing, laser-assisted electrophoretic deposition, laser-induced forward transfer, local electroplating methods, laser-induced photoreduction and focused electron or ion beam induced deposition. Although these methods have proven to facilitate the AM of metals with feature sizes in the range of 0.1-10 µm, they are still in a prototype stage and their potential is not fully explored yet. For instance, comprehensive studies of material availability and material properties are often lacking, yet compulsory for actual applications. We address these items while critically discussing and comparing the potential of current microscale metal AM techniques. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila.

PubMed

Smukowski Heil, Caiti S; Ellison, Chris; Dubin, Matthew; Noor, Mohamed A F

2015-10-01

Meiotic recombination rate varies across the genome within and between individuals, populations, and species in virtually all taxa studied. In almost every species, this variation takes the form of discrete recombination hotspots, determined in some mammals by a protein called PRDM9. Hotspots and their determinants have a profound effect on the genomic landscape, and share certain features that extend across the tree of life. Drosophila, in contrast, are anomalous in their absence of hotspots, PRDM9, and other species-specific differences in the determination of recombination. To better understand the evolution of meiosis and general patterns of recombination across diverse taxa, we present a truly comprehensive portrait of recombination across time, combining recently published cross-based contemporary recombination estimates from each of two sister species with newly obtained linkage-disequilibrium-based historic estimates of recombination from both of these species. Using Drosophila pseudoobscura and Drosophila miranda as a model system, we compare recombination rate between species at multiple scales, and we suggest that Drosophila replicate the pattern seen in human-chimpanzee in which recombination rate is conserved at broad scales. We also find evidence of a species-wide recombination modifier(s), resulting in both a present and historic genome-wide elevation of recombination rates in D. miranda, and identify broad scale effects on recombination from the presence of an inversion. Finally, we reveal an unprecedented view of the distribution of recombination in D. pseudoobscura, illustrating patterns of linked selection and where recombination is taking place. Overall, by combining these estimation approaches, we highlight key similarities and differences in recombination between Drosophila and other organisms. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila

PubMed Central

Smukowski Heil, Caiti S.; Ellison, Chris; Dubin, Matthew; Noor, Mohamed A.F.

2015-01-01

Meiotic recombination rate varies across the genome within and between individuals, populations, and species in virtually all taxa studied. In almost every species, this variation takes the form of discrete recombination hotspots, determined in some mammals by a protein called PRDM9. Hotspots and their determinants have a profound effect on the genomic landscape, and share certain features that extend across the tree of life. Drosophila, in contrast, are anomalous in their absence of hotspots, PRDM9, and other species-specific differences in the determination of recombination. To better understand the evolution of meiosis and general patterns of recombination across diverse taxa, we present a truly comprehensive portrait of recombination across time, combining recently published cross-based contemporary recombination estimates from each of two sister species with newly obtained linkage-disequilibrium-based historic estimates of recombination from both of these species. Using Drosophila pseudoobscura and Drosophila miranda as a model system, we compare recombination rate between species at multiple scales, and we suggest that Drosophila replicate the pattern seen in human–chimpanzee in which recombination rate is conserved at broad scales. We also find evidence of a species-wide recombination modifier(s), resulting in both a present and historic genome-wide elevation of recombination rates in D. miranda, and identify broad scale effects on recombination from the presence of an inversion. Finally, we reveal an unprecedented view of the distribution of recombination in D. pseudoobscura, illustrating patterns of linked selection and where recombination is taking place. Overall, by combining these estimation approaches, we highlight key similarities and differences in recombination between Drosophila and other organisms. PMID:26430062

Vibrational tug-of-war: The pKA dependence of the broad vibrational features of strongly hydrogen-bonded carboxylic acids.

PubMed

Van Hoozen, Brian L; Petersen, Poul B

2018-04-07

Medium and strong hydrogen bonds give rise to broad vibrational features frequently spanning several hundred wavenumbers and oftentimes exhibiting unusual substructures. These broad vibrational features can be modeled from first principles, in a reduced dimensional calculation, that adiabatically separates low-frequency modes, which modulate the hydrogen bond length, from high-frequency OH stretch and bend modes that contribute to the vibrational structure. Previously this method was used to investigate the origin of an unusual vibrational feature frequently found in the spectra of dimers between carboxylic acids and nitrogen-containing aromatic bases that spans over 900 cm -1 and contains two broad peaks. It was found that the width of this feature largely originates from low-frequency modes modulating the hydrogen bond length and that the structure results from Fermi resonance interactions. In this report, we examine how these features change with the relative acid and base strength of the components as reflected by their aqueous pK A values. Dimers with large pK A differences are found to have features that can extend to frequencies below 1000 cm -1 . The relationships between mean OH/NH frequency, aqueous pK A , and O-N distance are examined in order to obtain a more rigorous understanding of the origin and shape of the vibrational features. The mean OH/NH frequencies are found to correlate well with O-N distances. The lowest OH stretch frequencies are found in dimer geometries with O-N distances between 2.5 and 2.6 Å. At larger O-N distances, the hydrogen bonding interaction is not as strong, resulting in higher OH stretch frequencies. When the O-N distance is smaller than 2.5 Å, the limited space between the O and N determines the OH stretch frequency, which gives rise to frequencies that decrease with O-N distances. These two effects place a lower limit on the OH stretch frequency which is calculated to be near 700 cm -1 . Understanding how the vibrational features of strongly hydrogen-bonded structures depend on the relative pK A and other structural parameters will guide studies of biological structures and analysis of proton transfer studies using photoacids.

Nanodiscs in Membrane Biochemistry and Biophysics.

PubMed

Denisov, Ilia G; Sligar, Stephen G

2017-03-22

Membrane proteins play a most important part in metabolism, signaling, cell motility, transport, development, and many other biochemical and biophysical processes which constitute fundamentals of life on the molecular level. Detailed understanding of these processes is necessary for the progress of life sciences and biomedical applications. Nanodiscs provide a new and powerful tool for a broad spectrum of biochemical and biophysical studies of membrane proteins and are commonly acknowledged as an optimal membrane mimetic system that provides control over size, composition, and specific functional modifications on the nanometer scale. In this review we attempted to combine a comprehensive list of various applications of nanodisc technology with systematic analysis of the most attractive features of this system and advantages provided by nanodiscs for structural and mechanistic studies of membrane proteins.

Bio-inspired, large scale, highly-scattering films for nanoparticle-alternative white surfaces

PubMed Central

Syurik, Julia; Siddique, Radwanul Hasan; Dollmann, Antje; Gomard, Guillaume; Schneider, Marc; Worgull, Matthias; Wiegand, Gabriele; Hölscher, Hendrik

2017-01-01

Inspired by the white beetle of the genus Cyphochilus, we fabricate ultra-thin, porous PMMA films by foaming with CO2 saturation. Optimising pore diameter and fraction in terms of broad-band reflectance results in very thin films with exceptional whiteness. Already films with 60 µm-thick scattering layer feature a whiteness with a reflectance of 90%. Even 9 µm thin scattering layers appear white with a reflectance above 57%. The transport mean free path in the artificial films is between 3.5 µm and 4 µm being close to the evolutionary optimised natural prototype. The bio-inspired white films do not lose their whiteness during further shaping, allowing for various applications. PMID:28429805

Sensing of single electrons using micro and nano technologies: a review

NASA Astrophysics Data System (ADS)

Jalil, Jubayer; Zhu, Yong; Ekanayake, Chandima; Ruan, Yong

2017-04-01

During the last three decades, the remarkable dynamic features of microelectromechanical systems (MEMS) and nanoelectromechanical systems (NEMS), and advances in solid-state electronics hold much potential for the fabrication of extremely sensitive charge sensors. These sensors have a broad range of applications, such as those involving the measurement of ionization radiation, detection of bio-analyte and aerosol particles, mass spectrometry, scanning tunneling microscopy, and quantum computation. Designing charge sensors (also known as charge electrometers) for electrometry is deemed significant because of the sensitivity and resolution issues in the range of micro- and nano-scales. This article reviews the development of state-of-the-art micro- and nano-charge sensors, and discusses their technological challenges for practical implementation.

Bio-inspired, large scale, highly-scattering films for nanoparticle-alternative white surfaces

NASA Astrophysics Data System (ADS)

Syurik, Julia; Siddique, Radwanul Hasan; Dollmann, Antje; Gomard, Guillaume; Schneider, Marc; Worgull, Matthias; Wiegand, Gabriele; Hölscher, Hendrik

2017-04-01

Inspired by the white beetle of the genus Cyphochilus, we fabricate ultra-thin, porous PMMA films by foaming with CO2 saturation. Optimising pore diameter and fraction in terms of broad-band reflectance results in very thin films with exceptional whiteness. Already films with 60 µm-thick scattering layer feature a whiteness with a reflectance of 90%. Even 9 µm thin scattering layers appear white with a reflectance above 57%. The transport mean free path in the artificial films is between 3.5 µm and 4 µm being close to the evolutionary optimised natural prototype. The bio-inspired white films do not lose their whiteness during further shaping, allowing for various applications.

Perceiving beauty in all women: Psychometric evaluation of the Broad Conceptualization of Beauty Scale.

PubMed

Tylka, Tracy L; Iannantuono, Amy C

2016-06-01

Women's ability to broadly conceptualize beauty (i.e., perceive many looks, appearances, body sizes/shapes, and inner characteristics as beautiful) has been identified as a facet of positive body image in qualitative research. A scale is needed to be able to assess this construct within quantitative research. Therefore, we developed the Broad Conceptualization of Beauty Scale (BCBS), which measures the extent women define female beauty widely within external and internal characteristics, and examined its psychometric properties among four community samples totaling 1086 women. Exploratory and confirmatory factor analyses revealed a unidimensional structure with nine items. The internal consistency, test-retest reliability, and construct (convergent, discriminant, and incremental) validity of its scores were upheld. Researchers and clinicians can use the BCBS alone to assess women's perceptions of female beauty, or they can use the BCBS alongside women's perceptions of self-beauty to more comprehensively explore women's ability to broadly conceptualize beauty for others and themselves. Copyright © 2016 Elsevier Ltd. All rights reserved.

MINC 2.0: A Flexible Format for Multi-Modal Images.

PubMed

Vincent, Robert D; Neelin, Peter; Khalili-Mahani, Najmeh; Janke, Andrew L; Fonov, Vladimir S; Robbins, Steven M; Baghdadi, Leila; Lerch, Jason; Sled, John G; Adalat, Reza; MacDonald, David; Zijdenbos, Alex P; Collins, D Louis; Evans, Alan C

2016-01-01

It is often useful that an imaging data format can afford rich metadata, be flexible, scale to very large file sizes, support multi-modal data, and have strong inbuilt mechanisms for data provenance. Beginning in 1992, MINC was developed as a system for flexible, self-documenting representation of neuroscientific imaging data with arbitrary orientation and dimensionality. The MINC system incorporates three broad components: a file format specification, a programming library, and a growing set of tools. In the early 2000's the MINC developers created MINC 2.0, which added support for 64-bit file sizes, internal compression, and a number of other modern features. Because of its extensible design, it has been easy to incorporate details of provenance in the header metadata, including an explicit processing history, unique identifiers, and vendor-specific scanner settings. This makes MINC ideal for use in large scale imaging studies and databases. It also makes it easy to adapt to new scanning sequences and modalities.

Multiplexed precision genome editing with trackable genomic barcodes in yeast.

PubMed

Roy, Kevin R; Smith, Justin D; Vonesch, Sibylle C; Lin, Gen; Tu, Chelsea Szu; Lederer, Alex R; Chu, Angela; Suresh, Sundari; Nguyen, Michelle; Horecka, Joe; Tripathi, Ashutosh; Burnett, Wallace T; Morgan, Maddison A; Schulz, Julia; Orsley, Kevin M; Wei, Wu; Aiyar, Raeka S; Davis, Ronald W; Bankaitis, Vytas A; Haber, James E; Salit, Marc L; St Onge, Robert P; Steinmetz, Lars M

2018-07-01

Our understanding of how genotype controls phenotype is limited by the scale at which we can precisely alter the genome and assess the phenotypic consequences of each perturbation. Here we describe a CRISPR-Cas9-based method for multiplexed accurate genome editing with short, trackable, integrated cellular barcodes (MAGESTIC) in Saccharomyces cerevisiae. MAGESTIC uses array-synthesized guide-donor oligos for plasmid-based high-throughput editing and features genomic barcode integration to prevent plasmid barcode loss and to enable robust phenotyping. We demonstrate that editing efficiency can be increased more than fivefold by recruiting donor DNA to the site of breaks using the LexA-Fkh1p fusion protein. We performed saturation editing of the essential gene SEC14 and identified amino acids critical for chemical inhibition of lipid signaling. We also constructed thousands of natural genetic variants, characterized guide mismatch tolerance at the genome scale, and ascertained that cryptic Pol III termination elements substantially reduce guide efficacy. MAGESTIC will be broadly useful to uncover the genetic basis of phenotypes in yeast.

Analysis and use of VAS satellite data

NASA Technical Reports Server (NTRS)

Fuelberg, Henry E.; Andrews, Mark J.; Beven, John L., II; Moore, Steven R.; Muller, Bradley M.

1989-01-01

Four interrelated investigations have examined the analysis and use of VAS satellite data. A case study of VAS-derived mesoscale stability parameters suggested that they would have been a useful supplement to conventional data in the forecasting of thunderstorms on the day of interest. A second investigation examined the roles of first guess and VAS radiometric data in producing sounding retrievals. Broad-scale patterns of the first guess, radiances, and retrievals frequently were similar, whereas small-scale retrieval features, especially in the dew points, were often of uncertain origin. Two research tasks considered 6.7 micron middle tropospheric water vapor imagery. The first utilized radiosonde data to examine causes for two areas of warm brightness temperature. Subsidence associated with a translating jet streak was important. The second task involving water vapor imagery investigated simulated imagery created from LAMPS output and a radiative transfer algorithm. Simulated image patterns were found to compare favorably with those actually observed by VAS. Furthermore, the mass/momentum fields from LAMPS were powerful tools for understanding causes for the image configurations.

Potential vegetation hierarchy for the Blue Mountains section of northeastern Oregon, southeastern Washington, and west-central Idaho.

Treesearch

David C. Powell; Charles G. Johnson; Elizabeth A. Crowe; Aaron Wells; David K. Swanson

2007-01-01

The work described in this report was initiated during the Interior Columbia Basin Ecosystem Management Project (ICBEMP). The ICBEMP produced a broad-scale scientific assessment of ecological, biophysical, social, and economic conditions for the interior Columbia River basin and portions of the Klamath and Great Basins. The broad-scale assessment made extensive use of...

Drivers of variation in aboveground net primary productivity and plant community composition differe across a broad precipitation gradient

USDA-ARS?s Scientific Manuscript database

It has long been a goal of ecology to determine what factors drive variation in aboveground net primary production (ANPP). Total annual precipitation has been shown to be a strong predictor of ANPP across broad spatial scales, but a poor predictor at local scales. Here we aim to determine the amount...

Review of broad-scale drought monitoring of forests: Toward an integrated data mining approach

Treesearch

Steve Norman; Frank H. Koch; William W. Hargrove

2016-01-01

Efforts to monitor the broad-scale impacts of drought on forests often come up short. Drought is a direct stressor of forests as well as a driver of secondary disturbance agents, making a full accounting of drought impacts challenging. General impacts  can be inferred from moisture deficits quantified using precipitation and temperature measurements. However,...

Design and function of biomimetic multilayer water purification membranes

PubMed Central

Ling, Shengjie; Qin, Zhao; Huang, Wenwen; Cao, Sufeng; Kaplan, David L.; Buehler, Markus J.

2017-01-01

Multilayer architectures in water purification membranes enable increased water throughput, high filter efficiency, and high molecular loading capacity. However, the preparation of membranes with well-organized multilayer structures, starting from the nanoscale to maximize filtration efficiency, remains a challenge. We report a complete strategy to fully realize a novel biomaterial-based multilayer nanoporous membrane via the integration of computational simulation and experimental fabrication. Our comparative computational simulations, based on coarse-grained models of protein nanofibrils and mineral plates, reveal that the multilayer structure can only form with weak interactions between nanofibrils and mineral plates. We demonstrate experimentally that silk nanofibril (SNF) and hydroxyapatite (HAP) can be used to fabricate highly ordered multilayer membranes with nanoporous features by combining protein self-assembly and in situ biomineralization. The production is optimized to be a simple and highly repeatable process that does not require sophisticated equipment and is suitable for scaled production of low-cost water purification membranes. These membranes not only show ultrafast water penetration but also exhibit broad utility and high efficiency of removal and even reuse (in some cases) of contaminants, including heavy metal ions, dyes, proteins, and other nanoparticles in water. Our biomimetic design and synthesis of these functional SNF/HAP materials have established a paradigm that could lead to the large-scale, low-cost production of multilayer materials with broad spectrum and efficiency for water purification, with applications in wastewater treatment, biomedicine, food industry, and the life sciences. PMID:28435877

Design and function of biomimetic multilayer water purification membranes.

PubMed

Ling, Shengjie; Qin, Zhao; Huang, Wenwen; Cao, Sufeng; Kaplan, David L; Buehler, Markus J

2017-04-01

Multilayer architectures in water purification membranes enable increased water throughput, high filter efficiency, and high molecular loading capacity. However, the preparation of membranes with well-organized multilayer structures, starting from the nanoscale to maximize filtration efficiency, remains a challenge. We report a complete strategy to fully realize a novel biomaterial-based multilayer nanoporous membrane via the integration of computational simulation and experimental fabrication. Our comparative computational simulations, based on coarse-grained models of protein nanofibrils and mineral plates, reveal that the multilayer structure can only form with weak interactions between nanofibrils and mineral plates. We demonstrate experimentally that silk nanofibril (SNF) and hydroxyapatite (HAP) can be used to fabricate highly ordered multilayer membranes with nanoporous features by combining protein self-assembly and in situ biomineralization. The production is optimized to be a simple and highly repeatable process that does not require sophisticated equipment and is suitable for scaled production of low-cost water purification membranes. These membranes not only show ultrafast water penetration but also exhibit broad utility and high efficiency of removal and even reuse (in some cases) of contaminants, including heavy metal ions, dyes, proteins, and other nanoparticles in water. Our biomimetic design and synthesis of these functional SNF/HAP materials have established a paradigm that could lead to the large-scale, low-cost production of multilayer materials with broad spectrum and efficiency for water purification, with applications in wastewater treatment, biomedicine, food industry, and the life sciences.

Broad-scale consequences of land management: Columbia basin example.

Treesearch

Richard W. Haynes; Thomas M. Quigley

2001-01-01

Integrating management actions to consistently achieve broad ecological and socioeconomic goals is a challenge largely unmet. The presumed or real conflict between these goals establishes a forum for debate. Broad measures are needed to describe tradeoffs, trends in conditions under varying management scenarios, and a transparent science underpinning. The Interior...

Expression of the Broad Autism Phenotype in Simplex Autism Families from the Simons Simplex Collection

ERIC Educational Resources Information Center

Davidson, Julie; Goin-Kochel, Robin P.; Green-Snyder, Lee Anne; Hundley, Rachel J.; Warren, Zachary; Peters, Sarika U.

2014-01-01

The broad autism phenotype (BAP) refers to the phenotypic expression of an underlying genetic liability to autism, manifest in non-autistic relatives. This study examined the relationship among the "Broad Autism Phenotype Questionnaire" (BAPQ), "Social Responsiveness Scale: Adult Research Version" (SRS:ARV), and "Family…

Social-Cognition and the Broad Autism Phenotype: Identifying Genetically Meaningful Phenotypes

ERIC Educational Resources Information Center

Losh, Molly; Piven, Joseph

2007-01-01

Background: Strong evidence from twin and family studies suggests that the genetic liability to autism may be expressed through personality and language characteristics qualitatively similar, but more subtly expressed than those defining the full syndrome. This study examined behavioral features of this "broad autism phenotype" (BAP) in relation…

It's No Secret: Progress Prized in Brownsville

ERIC Educational Resources Information Center

Zehr, Mary Ann

2008-01-01

This article features Brownsville Independent School District which was awarded the prestigious 2008 Broad Prize for Urban Education for being the nation's most improved urban school district. The Texas border district sees teacher training and data-based instruction as paths to learning gains--and the $1 million Broad award adds validation. In…

The Broad Autism Phenotype Questionnaire

ERIC Educational Resources Information Center

Hurley, Robert S. E.; Losh, Molly; Parlier, Morgan; Reznick, J. Steven; Piven, Joseph

2007-01-01

The broad autism phenotype (BAP) is a set of personality and language characteristics that reflect the phenotypic expression of the genetic liability to autism, in non-autistic relatives of autistic individuals. These characteristics are milder but qualitatively similar to the defining features of autism. A new instrument designed to measure the…

Rich and Poor Cities in Europe. An Urban Scaling Approach to Mapping the European Economic Transition

PubMed Central

2016-01-01

Recent advances in the urban science make broad use of the notion of scaling. We focus here on the important scaling relationship between the gross metropolitan product (GMP) of a city and its population (pop). It has been demonstrated that GMP ∝ Y Ypopβ with β always greater than 1 and close to 1.2. This fundamental finding highlights a universal rule that holds across countries and cultures and might explain the very nature of cities. However, in an increasingly connected world, the hypothesis that the economy of a city solely depends on its population might be questionable. Using data for 248 cities in the European Union between 2005 and 2010, we found a double GMP/pop scaling regime. For West EU cities, β = 1 over the whole the period, while for post-communist cities β > 1 and increases from ∼1.2 to ∼1.4. The evolution of the scaling exponent describes the convergence of post-communist European cities to open and liberal economies. We propose a simple model of economic convergence in which, under stable political conditions, a linear GMP/pop scaling is expected for all cities. The results suggest that the GMP/pop super-linear scaling represents a phase of economic growth rather than a steady, universal urban feature. The results also suggest that relationships between cities are embedded in their political and economic context and cannot be neglected in explanations of cities, urbanization and urban economics. PMID:27551719

Rich and Poor Cities in Europe. An Urban Scaling Approach to Mapping the European Economic Transition.

PubMed

Strano, Emanuele; Sood, Vishal

2016-01-01

Recent advances in the urban science make broad use of the notion of scaling. We focus here on the important scaling relationship between the gross metropolitan product (GMP) of a city and its population (pop). It has been demonstrated that GMP ∝ Y Ypopβ with β always greater than 1 and close to 1.2. This fundamental finding highlights a universal rule that holds across countries and cultures and might explain the very nature of cities. However, in an increasingly connected world, the hypothesis that the economy of a city solely depends on its population might be questionable. Using data for 248 cities in the European Union between 2005 and 2010, we found a double GMP/pop scaling regime. For West EU cities, β = 1 over the whole the period, while for post-communist cities β > 1 and increases from ∼1.2 to ∼1.4. The evolution of the scaling exponent describes the convergence of post-communist European cities to open and liberal economies. We propose a simple model of economic convergence in which, under stable political conditions, a linear GMP/pop scaling is expected for all cities. The results suggest that the GMP/pop super-linear scaling represents a phase of economic growth rather than a steady, universal urban feature. The results also suggest that relationships between cities are embedded in their political and economic context and cannot be neglected in explanations of cities, urbanization and urban economics.

Interpersonal Development, Stability, and Change in Early Adulthood

PubMed Central

Wright, Aidan G. C.; Pincus, Aaron L.; Lenzenweger, Mark F.

2011-01-01

Objective This goal of this research was to explore the development of the interpersonal system mapped by the interpersonal circumplex in early adulthood (Ages 18-22). Method This study uses the Longitudinal Study of Personality Disorders sample (N = 250; 53% Female). Participants completed the Revised Interpersonal Adjective Scales (Wiggins, Trapnell, & Phillips, 1988) in their freshman, sophomore, and senior years of college. Estimates of structural, rank-order, mean, individual, and ipsative stability were calculated for the broad interpersonal dimensions of Dominance and Affiliation, and also the lower-order octant scales. Additionally, the interpersonal profile parameters of differentiation and prototypicality were calculated at each wave and explored longitudinally, and also used as predictors of interpersonal stability. Results We found excellent structural and high rank-order and ipsative stability in the interpersonal scales over this time period. Mean increases on the Affiliation axis, but not on the Dominance axis, were found to mask differential rates of change among the octant scales, along with significant individual variation in the rates of change. Interpersonal differentiation and prototypicality were related to higher stability in overall interpersonal style. Conclusions Results point to evidence of both stability and nuanced change, illuminating some of the features of the structural variables that can be derived from interpersonal circumplex profiles. PMID:22224462

Application of PALSAR-2 Remote Sensing Data for Landslide Hazard Mapping in Kelantan River Basin, Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Beiranvand Pour, Amin; Hashim, Mazlan

2016-06-01

Yearly, several landslides ensued during heavy monsoons rainfall in Kelantan river basin, peninsular Malaysia, which are obviously connected to geological structures and topographical features of the region. In this study, the recently launched Phased Array type L-band Synthetic Aperture Radar-2 (PALSAR-2) onboard the Advanced Land Observing Satellite-2 (ALOS-2), remote sensing data were used to map geological structural and topographical features in the Kelantan river basin for identification of high potential risk and susceptible zones for landslides. Adaptive Local Sigma filter was selected and applied to accomplish speckle reduction and preserving both edges and features in PALSAR-2 fine mode observation images. Different polarization images were integrated to enhance geological structures. Additionally, directional filters were applied to the PALSAR-2 Local Sigma resultant image for edge enhancement and detailed identification of linear features. Several faults, drainage patterns and lithological contact layers were identified at regional scale. In order to assess the results, fieldwork and GPS survey were conducted in the landslide affected zones in the Kelantan river basin. Results demonstrate the most of the landslides were associated with N-S, NNW-SSE and NE-SW trending faults, angulated drainage pattern and metamorphic and Quaternary units. Consequently, structural and topographical geology maps were produced for Kelantan river basin using PALSAR-2 data, which could be broadly applicable for landslide hazard mapping.

Photographer : JPL Range : 312, 000 kilometers (195,000 miles) This photo of Ganymede (Ice Giant)

NASA Technical Reports Server (NTRS)

1979-01-01

Photographer : JPL Range : 312, 000 kilometers (195,000 miles) This photo of Ganymede (Ice Giant) was taken from Voyager 2 and shows features down to about 5 to 6 kilometers across. Different types of terrain common on Ganymede's surface are visible. The boundary of the largest region of dark ancient terrain on Ganymede can be seen to the east (right), revealing some of the light linear features which may be all that remains of a large ancient impact structure similar to the large ring structure on Callisto. The broad light regions running through the image are the typical grooved structures seen within another example of what might be evidence of large scale lateral motion in Ganymede's crust. The band of grooved terrain (about 100 kilometers wide) in this region appears to be offset by 50 kilometers or more on the left hand edge by a linear feature perpendicular to it. A feature similar to this one was previously discovered by Voyager 1. These are the first clear examples of strike-slip style faulting on any planet other than Earth. Many examples of craters of all ages can be seen in this image, ranging from fresh, bright ray craters to large, subdued circular markings thought to be the 'scars' of large ancient impacts that have been flatteded by glacier-like flows.

TSA - A Two Scale Approximation for Wind-Generated Ocean Surface Waves

DTIC Science & Technology

2012-09-30

broad-scale version of TSA, or ‘ dTSA ’. In this manner dTSA is able to respond to changing wind situations. Results were shown to compare well with ‘exact...We also implemented the revised version of TSA, denoted ‘ dTSA ’, in WW3 for tests with a storm case, hurricane Juan, which made landfall as a...manner in which the broad-scale of TSA was defined, developing ‘ dTSA ’ as described above, so that in complicated rapidly changing wave spectra cases, a

A comparative study on genetic effects of artificial and natural habitat fragmentation on Loropetalum chinense (Hamamelidaceae) in Southeast China.

PubMed

Yuan, N; Comes, H P; Cao, Y N; Guo, R; Zhang, Y H; Qiu, Y X

2015-06-01

Elucidating the demographic and landscape features that determine the genetic effects of habitat fragmentation has become fundamental to research in conservation and evolutionary biology. Land-bridge islands provide ideal study areas for investigating the genetic effects of habitat fragmentation at different temporal and spatial scales. In this context, we compared patterns of nuclear microsatellite variation between insular populations of a shrub of evergreen broad-leaved forest, Loropetalum chinense, from the artificially created Thousand-Island Lake (TIL) and the Holocene-dated Zhoushan Archipelago of Southeast China. Populations from the TIL region harboured higher levels of genetic diversity than those from the Zhoushan Archipelago, but these differences were not significant. There was no correlation between genetic diversity and most island features, excepting a negative effect of mainland-island distance on allelic richness and expected heterozygosity in the Zhoushan Archipelago. In general, levels of gene flow among island populations were moderate to high, and tests of alternative models of population history strongly favoured a gene flow-drift model over a pure drift model in each region. In sum, our results showed no obvious genetic effects of habitat fragmentation due to recent (artificial) or past (natural) island formation. Rather, they highlight the importance of gene flow (most likely via seed) in maintaining genetic variation and preventing inter-population differentiation in the face of habitat 'insularization' at different temporal and spatial scales.

Broad-scale trophic shift in the pelagic North Pacific revealed by an oceanic seabird

PubMed Central

Wiley, Anne E.; James, Helen F.; Rossman, Sam; Walker, William A.; Zipkin, Elise F.; Chikaraishi, Yoshito

2017-01-01

Human-induced ecological change in the open oceans appears to be accelerating. Fisheries, climate change and elevated nutrient inputs are variously blamed, at least in part, for altering oceanic ecosystems. Yet it is challenging to assess the extent of anthropogenic change in the open oceans, where historical records of ecological conditions are sparse, and the geographical scale is immense. We developed millennial-scale amino acid nitrogen isotope records preserved in ancient animal remains to understand changes in food web structure and nutrient regimes in the oceanic realm of the North Pacific Ocean (NPO). Our millennial-scale isotope records of amino acids in bone collagen in a wide-ranging oceanic seabird, the Hawaiian petrel (Pterodroma sandwichensis), showed that trophic level declined over time. The amino acid records do not support a broad-scale increase in nitrogen fixation in the North Pacific subtropical gyre, rejecting an earlier interpretation based on bulk and amino acid specific δ15N chronologies for Hawaiian deep-sea corals and bulk δ15N chronologies for the Hawaiian petrel. Rather, our work suggests that the food web structure in the NPO has shifted at a broad geographical scale, a phenomenon potentially related to industrial fishing. PMID:28356448

Giant polygons and mounds in the lowlands of Mars: signatures of an ancient ocean?

PubMed

Oehler, Dorothy Z; Allen, Carlton C

2012-06-01

This paper presents the hypothesis that the well-known giant polygons and bright mounds of the martian lowlands may be related to a common process-a process of fluid expulsion that results from burial of fine-grained sediments beneath a body of water. Specifically, we hypothesize that giant polygons and mounds in Chryse and Acidalia Planitiae are analogous to kilometer-scale polygons and mud volcanoes in terrestrial, marine basins and that the co-occurrence of masses of these features in Chryse and Acidalia may be the signature of sedimentary processes in an ancient martian ocean. We base this hypothesis on recent data from both Earth and Mars. On Earth, 3-D seismic data illustrate kilometer-scale polygons that may be analogous to the giant polygons on Mars. The terrestrial polygons form in fine-grained sediments that have been deposited and buried in passive-margin, marine settings. These polygons are thought to result from compaction/dewatering, and they are commonly associated with fluid expulsion features, such as mud volcanoes. On Mars, in Chryse and Acidalia Planitiae, orbital data demonstrate that giant polygons and mounds have overlapping spatial distributions. There, each set of features occurs within a geological setting that is seemingly analogous to that of the terrestrial, kilometer-scale polygons (broad basin of deposition, predicted fine-grained sediments, and lack of significant horizontal stress). Regionally, the martian polygons and mounds both show a correlation to elevation, as if their formation were related to past water levels. Although these observations are based on older data with incomplete coverage, a similar correlation to elevation has been established in one local area studied in detail with newer higher-resolution data. Further mapping with the latest data sets should more clearly elucidate the relationship(s) of the polygons and mounds to elevation over the entire Chryse-Acidalia region and thereby provide more insight into this hypothesis.

Spectral reflectance and emissivity features of broad leaf plants: Prospects for remote sensing in the thermal infrared (8.0-14.0 μm)

USGS Publications Warehouse

Ribeiro da Luz, Beatriz; Crowley, James K.

2007-01-01

In contrast to visible and short-wave infrared data, thermal infrared spectra of broad leaf plants show considerable spectral diversity, suggesting that such data eventually could be utilized to map vegetation composition. However, remotely measuring the subtle emissivity features of leaves still presents major challenges. To be successful, sensors operating in the 8–14 μm atmospheric window must have high signal-to-noise and a small enough instantaneous field of view to allow measurements of only a few leaf surfaces. Methods for atmospheric compensation, temperature–emissivity separation, and spectral feature analysis also will need to be refined to allow the recognition, and perhaps, exploitation of leaf thermal infrared spectral properties.

Ice streams of the Late Wisconsin Cordilleran Ice Sheet in western North America

NASA Astrophysics Data System (ADS)

Eyles, Nick; Arbelaez Moreno, Lina; Sookhan, Shane

2018-01-01

The Late Wisconsin Cordilleran Ice Sheet (CIS) of western North America is thought to have reached its maximum extent (∼2.5 × 106 km2) as late at c. 14.5 ka. Most (80%) of the ice sheet's bed consists of high mountains but its 'core zone' sited on plateaux of the Intermontane Belt of British Columbia and coterminous parts of the USA, shows broad swaths of subglacially-streamlined rock and sediment. Broad scale mapping from new digital imagery data identifies three subglacial bed types: 1) 'hard beds' of variably streamlined bedrock; 2) drumlinized 'soft beds' of deformation till reworked from antecedent sediment, and 3) 'mixed beds' of variably-streamlined bedrock protruding through drumlinized sediment. Drumlins on soft beds appear to be erosional features cut into till and antecedent sediments, and identify the catchment areas of paleo ice streams expressed downglacier as flow sets of megascale glacial lineations (MSGLs). 'Grooved' and 'cloned' drumlins appear to record the transition from drumlins to MSGLs. The location of paleo ice streams reflects topographic funneling of ice from plateau surfaces through outlet valleys and a soft bed that sustained fast flow; rock-cut MSGLs are also present locally on the floors of outlet valleys. CIS disintegrated in <1000 years shortly after c. 13.0 ka releasing very large volumes of meltwater and sediment to the Pacific coast. Abrupt deglaciation may reflect unsustainable calving of marine-based ice streams along the glacio-isostatically depressed coast; large deep 'fiord lakes' in the ice sheet's interior may have played an analogous role. Mapping of the broad scale distribution of bed types across the Cordilleran Ice Sheet provides key information for paleoglaciological modelling and also for understanding the beds of modern ice masses such as the Greenland Ice Sheet which is of a comparable topographic setting.

Habitat classification modeling with incomplete data: Pushing the habitat envelope

USGS Publications Warehouse

Zarnetske, P.L.; Edwards, T.C.; Moisen, Gretchen G.

2007-01-01

Habitat classification models (HCMs) are invaluable tools for species conservation, land-use planning, reserve design, and metapopulation assessments, particularly at broad spatial scales. However, species occurrence data are often lacking and typically limited to presence points at broad scales. This lack of absence data precludes the use of many statistical techniques for HCMs. One option is to generate pseudo-absence points so that the many available statistical modeling tools can be used. Traditional techniques generate pseudoabsence points at random across broadly defined species ranges, often failing to include biological knowledge concerning the species-habitat relationship. We incorporated biological knowledge of the species-habitat relationship into pseudo-absence points by creating habitat envelopes that constrain the region from which points were randomly selected. We define a habitat envelope as an ecological representation of a species, or species feature's (e.g., nest) observed distribution (i.e., realized niche) based on a single attribute, or the spatial intersection of multiple attributes. We created HCMs for Northern Goshawk (Accipiter gentilis atricapillus) nest habitat during the breeding season across Utah forests with extant nest presence points and ecologically based pseudo-absence points using logistic regression. Predictor variables were derived from 30-m USDA Landfire and 250-m Forest Inventory and Analysis (FIA) map products. These habitat-envelope-based models were then compared to null envelope models which use traditional practices for generating pseudo-absences. Models were assessed for fit and predictive capability using metrics such as kappa, thresholdindependent receiver operating characteristic (ROC) plots, adjusted deviance (Dadj2), and cross-validation, and were also assessed for ecological relevance. For all cases, habitat envelope-based models outperformed null envelope models and were more ecologically relevant, suggesting that incorporating biological knowledge into pseudo-absence point generation is a powerful tool for species habitat assessments. Furthermore, given some a priori knowledge of the species-habitat relationship, ecologically based pseudo-absence points can be applied to any species, ecosystem, data resolution, and spatial extent. ?? 2007 by the Ecological Society of America.

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

PubMed Central

Weber, Marc; Teeling, Hanno; Huang, Sixing; Waldmann, Jost; Kassabgy, Mariette; Fuchs, Bernhard M; Klindworth, Anna; Klockow, Christine; Wichels, Antje; Gerdts, Gunnar; Amann, Rudolf; Glöckner, Frank Oliver

2011-01-01

Next-generation sequencing (NGS) technologies have enabled the application of broad-scale sequencing in microbial biodiversity and metagenome studies. Biodiversity is usually targeted by classifying 16S ribosomal RNA genes, while metagenomic approaches target metabolic genes. However, both approaches remain isolated, as long as the taxonomic and functional information cannot be interrelated. Techniques like self-organizing maps (SOMs) have been applied to cluster metagenomes into taxon-specific bins in order to link biodiversity with functions, but have not been applied to broad-scale NGS-based metagenomics yet. Here, we provide a novel implementation, demonstrate its potential and practicability, and provide a web-based service for public usage. Evaluation with published data sets mimicking varyingly complex habitats resulted into classification specificities and sensitivities of close to 100% to above 90% from phylum to genus level for assemblies exceeding 8 kb for low and medium complexity data. When applied to five real-world metagenomes of medium complexity from direct pyrosequencing of marine subsurface waters, classifications of assemblies above 2.5 kb were in good agreement with fluorescence in situ hybridizations, indicating that biodiversity was mostly retained within the metagenomes, and confirming high classification specificities. This was validated by two protein-based classifications (PBCs) methods. SOMs were able to retrieve the relevant taxa down to the genus level, while surpassing PBCs in resolution. In order to make the approach accessible to a broad audience, we implemented a feature-rich web-based SOM application named TaxSOM, which is freely available at http://www.megx.net/toolbox/taxsom. TaxSOM can classify reads or assemblies exceeding 2.5 kb with high accuracy and thus assists in linking biodiversity and functions in metagenome studies, which is a precondition to study microbial ecology in a holistic fashion. PMID:21160538

Modelling deep water habitats to develop a spatially explicit, fine scale understanding of the distribution of the western rock lobster, Panulirus cygnus.

PubMed

Hovey, Renae K; Van Niel, Kimberly P; Bellchambers, Lynda M; Pember, Matthew B

2012-01-01

The western rock lobster, Panulirus cygnus, is endemic to Western Australia and supports substantial commercial and recreational fisheries. Due to and its wide distribution and the commercial and recreational importance of the species a key component of managing western rock lobster is understanding the ecological processes and interactions that may influence lobster abundance and distribution. Using terrain analyses and distribution models of substrate and benthic biota, we assess the physical drivers that influence the distribution of lobsters at a key fishery site. Using data collected from hydroacoustic and towed video surveys, 20 variables (including geophysical, substrate and biota variables) were developed to predict the distributions of substrate type (three classes of reef, rhodoliths and sand) and dominant biota (kelp, sessile invertebrates and macroalgae) within a 40 km(2) area about 30 km off the west Australian coast. Lobster presence/absence data were collected within this area using georeferenced pots. These datasets were used to develop a classification tree model for predicting the distribution of the western rock lobster. Interestingly, kelp and reef were not selected as predictors. Instead, the model selected geophysical and geomorphic scalar variables, which emphasise a mix of terrain within limited distances. The model of lobster presence had an adjusted D(2) of 64 and an 80% correct classification. Species distribution models indicate that juxtaposition in fine scale terrain is most important to the western rock lobster. While key features like kelp and reef may be important to lobster distribution at a broad scale, it is the fine scale features in terrain that are likely to define its ecological niche. Determining the most appropriate landscape configuration and scale will be essential to refining niche habitats and will aid in selecting appropriate sites for protecting critical lobster habitats.

Movement disorder society unified Parkinson disease rating scale experiences in daily living: longitudinal changes and correlation with other assessments.

PubMed

Lang, Anthony E; Eberly, Shirley; Goetz, Christopher G; Stebbins, Glenn; Oakes, David; Marek, Ken; Ravina, Bernard; Tanner, Caroline M; Shoulson, Ira

2013-12-01

The Movement Disorder Society (MDS) commissioned a revision of the UPDRS with the goals of improving instructions and definitions, more accurately evaluating milder features, and assessing patient-reported outcomes and nonmotor features. To date, no study has evaluated longitudinal changes in components of the MDS-UPDRS over time or correlated these with changes in other scales of various symptoms. We assessed Parts I and II of the MDS-UPDRS (non-Motor and Motor Experiences of Daily Living [nM-EDL, M-EDL]) as well as a number of other scales of motor, cognitive and behavioral function in a large population of patients (n = 383) with early- to mid-stage Parkinson's disease (PD) who had previously participated in a trial of a putative disease-modifying agent. Both parts of a MDS-UPDRS showed significant change over the 3-year follow-up period, with M-EDL scores declining to a greater extent than nM-EDL. Both the scores and their changes over time correlated relatively well with other rating scales of similar disease aspects. Modest correlations with the original version of the UPDRS supported the increased attention to nonmotor symptoms as well as milder levels of severity in the MDS-UPDRS. The M-EDL was much more sensitive to change over time in these early- to mid-stage patients than the original UPDRS Activities of Daily Living (ADL) scale. Finally, we showed no change over time in a small group of individuals with dopamine transporter single-photon emission computed tomography scans without evidence for dopamine deficiency. The nM-EDL and M-EDL components of the MDS-UPDRS provide an effective, relevant measure of change in the broad spectrum of symptoms of PD over the first decade of the disease. © 2013 Movement Disorder Society.

Modelling Deep Water Habitats to Develop a Spatially Explicit, Fine Scale Understanding of the Distribution of the Western Rock Lobster, Panulirus cygnus

PubMed Central

Hovey, Renae K.; Van Niel, Kimberly P.; Bellchambers, Lynda M.; Pember, Matthew B.

2012-01-01

Background The western rock lobster, Panulirus cygnus, is endemic to Western Australia and supports substantial commercial and recreational fisheries. Due to and its wide distribution and the commercial and recreational importance of the species a key component of managing western rock lobster is understanding the ecological processes and interactions that may influence lobster abundance and distribution. Using terrain analyses and distribution models of substrate and benthic biota, we assess the physical drivers that influence the distribution of lobsters at a key fishery site. Methods and Findings Using data collected from hydroacoustic and towed video surveys, 20 variables (including geophysical, substrate and biota variables) were developed to predict the distributions of substrate type (three classes of reef, rhodoliths and sand) and dominant biota (kelp, sessile invertebrates and macroalgae) within a 40 km2 area about 30 km off the west Australian coast. Lobster presence/absence data were collected within this area using georeferenced pots. These datasets were used to develop a classification tree model for predicting the distribution of the western rock lobster. Interestingly, kelp and reef were not selected as predictors. Instead, the model selected geophysical and geomorphic scalar variables, which emphasise a mix of terrain within limited distances. The model of lobster presence had an adjusted D2 of 64 and an 80% correct classification. Conclusions Species distribution models indicate that juxtaposition in fine scale terrain is most important to the western rock lobster. While key features like kelp and reef may be important to lobster distribution at a broad scale, it is the fine scale features in terrain that are likely to define its ecological niche. Determining the most appropriate landscape configuration and scale will be essential to refining niche habitats and will aid in selecting appropriate sites for protecting critical lobster habitats. PMID:22506021

Transient response to localized episodic heating in the tropics

NASA Technical Reports Server (NTRS)

Salby, M. L.; Garcia, R. R.

1985-01-01

It is generally recognized that equatorial disturbances in the lower stratosphere are excited by convective latent heat release associated with the Internal Tropical Convergence Zone (ITCZ). Recently, attention has also focused on tropical convection with regard to extratropical teleconnection patterns. Unlike equatorial waves which are trapped about the equator but propagate vertically, the latter extend well out of the tropics but are barotropic. They have been most widely discussed in connection with long-term climatological features. Both types of disturbances have been examined largely from the standpoint of steady monochromatic forcing, in the latter case zero frequency or time-mean heating. However, tropical convection as revealed by recent geostationary satellite imagery is anything but regular, surely not steady. Much of the heating variance is concentrated spatially within three localized convective centers: Indonesia, the Amazon, and the Congo. Convective activity within these regions undergoes an irregular evolution over the span of a couple of days. It involves a rather broad spectrum of spatial and temporal scales. The analysis of cloud brightness over the Eastern Atlantic and Africa suggests a characteristic time scale of 3-4 days and correlations scales in latitude and longitude of approximately 30 deg.

Broad-scale assessments of ecological landscapes: developing methods and applications

USGS Publications Warehouse

Carr, Natasha B.; Wood, David J. A.; Bowen, Zachary H.; Haby, Travis S.

2015-01-01

A major component of the BLM Landscape Approach is the Rapid Ecoregional Assessment (REA) program. REAs identify important ecosystems and wildlife habitats at broad spatial scales and determine where these resources are at risk from environmental stressors that can affect the integrity of ecological systems. Building on the lessons learned from completed or current REAs, the BLM, in partnership with the U.S. Geological Survey, will perform systematic comparisons of REA methods to identify the most promising suite of landscape-level analysis tools. In addition, the BLM and USGS will develop practical applications that demonstrate how to incorporate assessment information to address existing management issues, such as cumulative effects of proposed management actions. The outcome of these efforts will be a set of comprehensive technical guidance documents for conducting and applying broad-scale assessments.

Low-temperature and low atmospheric pressure infrared reflectance spectroscopy of Mars soil analog materials

NASA Technical Reports Server (NTRS)

Bishop, Janice L.; Pieters, Carle M.

1995-01-01

Infrared reflectance spectra of carefully selected Mars soil analog materials have been measured under low atmospheric pressures and temperatures. Chemically altered montmorillonites containing ferrihydrite and hydrated ferric sulfate complexes are examined, as well as synthetic ferrihydrate and a palagonitic soil from Haleakala, Maui. Reflectance spectra of these analog materials exhibit subtle visible to near-infrared features, which are indicative of nanophase ferric oxides or oxyhydroxides and are similar to features observed in the spectra of the bright regions of Mars. Infrared reflectance spectra of these analogs include hydration features due to structural OH, bound H2O and adsorbed H2O. The spectal character of these hydration features is highly dependent on the sample environment and on the nature of the H2O/OH in the analogs. The behavior of the hydration features near 1.9 micrometers, 2.2 micrometers, 2.7 micrometers, 3 micrometers, and 6 micrometers are reported here in spetra measured under Marslike atmospheric environment. In spectra of these analogs measured under dry Earth atmospheric conditions the 1.9-micrometer band depth is 8-17%; this band is much stonger under moist conditions. Under Marslike atmospheric conditions the 1.9-micrometer feature is broad and barely discernible (1-3% band depth) in spectra of the ferrihydrite and palagonitic soil samples. In comparable spectra of the ferric sulfate-bearing montmorillonite the 1.9-micrometer feature is also broad, but stronger (6% band depth). In the low atmospheric pressure and temperature spectra of the ferrihydrite-bearing montmorillonite this feature is sharper than the other analogs and relatively stronger (6% band depth). Although the intensity of the 3- micrometer band is weaker in spectra of each of the analogs when measured under Marslike conditions, the 3-micromter band remains a dominant feature and is especially broad in spectra of the ferrihydrite and palagonitic soil. The structural OH features observed in these materials at 2.2-2.3 micrometers and 2.27 micrometers remain largely unaffected by the environmental conditions. A shift in the Christiansen feature towards shorter wavelengths has also been observed with decreasing atmospheric pressure and temperature in the midinfrared spectra of these samples.

Low-temperature and low atmospheric pressure infrared reflectance spectroscopy of Mars soil analog materials

NASA Technical Reports Server (NTRS)

Bishop, Janice L.; Pieters, Carle M.

1995-01-01

Infrared reflectance spectra of carefully selected Mars soil analog materials have been measured under low atmospheric pressures and temperatures. Chemically altered montmorillonites containing ferrihydrite and hydrated ferric sulfate complexes are examined, as well as synthetic ferrihydrite and a palagonitic soil from Haleakala, Maui. Reflectance spectra of these analog materials exhibit subtle visible to near-infrared features, which are indicative of nanophase ferric oxides or oxyhydroxides and are similar to features observed in the spectra of the bright regions of Mars. Infrared reflectance spectra of these analogs include hydration features due to structural OH, bound H2O, and adsorbed H2O. The spectral character of these hydration features is highly dependent on the sample environment and on the nature of the H2O/OH in the analogs. The behavior of the hydration features near 1.9 micron, 2.2 micron, 2.7 micron, 3 micron, and 6 microns are reported here in spectra measured under a Marslike atmospheric environment. In spectra of these analogs measured under dry Earth atmospheric conditions the 1.9-micron band depth is 8-17%; this band is much stronger under moist conditions. Under Marslike atmospheric conditions the 1.9-micron feature is broad and barely discernible (1-3% band depth) in spectra of the ferrihydrite and palagonitic soil samples. In comparable spectra of the ferric sulfate-bearing montmorillonite the 1.9-micron feature is also broad, but stronger (6% band depth). In the low atmospheric pressure and temperature spectra of the ferrihydrite-bearing montmorillonite this feature is sharper than the other analogs and relatively stronger (6% band depth). Although the intensity of the 3-micron band is weaker in spectra of each of the analogs when measured under Marslike conditions, the 3-micron band remains a dominant feature and is especially broad in spectra of the ferrihydrite and palagonitic soil. The structural OH features observed in these materials at 2.2-2.3 micron and 2.75 microns remain largely unaffected by the environmental conditions. A shift in the Christiansen feature towards shorter wavelengths has also been observed with decreasing atmospheric pressure and temperature in the midinfrared spectra of these samples.

Spatial synchrony in cisco recruitment

USGS Publications Warehouse

Myers, Jared T.; Yule, Daniel L.; Jones, Michael L.; Ahrenstorff, Tyler D.; Hrabik, Thomas R.; Claramunt, Randall M.; Ebener, Mark P.; Berglund, Eric K.

2015-01-01

We examined the spatial scale of recruitment variability for disparate cisco (Coregonus artedi) populations in the Great Lakes (n = 8) and Minnesota inland lakes (n = 4). We found that the scale of synchrony was approximately 400 km when all available data were utilized; much greater than the 50-km scale suggested for freshwater fish populations in an earlier global analysis. The presence of recruitment synchrony between Great Lakes and inland lake cisco populations supports the hypothesis that synchronicity is driven by climate and not dispersal. We also found synchrony in larval densities among three Lake Superior populations separated by 25–275 km, which further supports the hypothesis that broad-scale climatic factors are the cause of spatial synchrony. Among several candidate climate variables measured during the period of larval cisco emergence, maximum wind speeds exhibited the most similar spatial scale of synchrony to that observed for cisco. Other factors, such as average water temperatures, exhibited synchrony on broader spatial scales, which suggests they could also be contributing to recruitment synchrony. Our results provide evidence that abiotic factors can induce synchronous patterns of recruitment for populations of cisco inhabiting waters across a broad geographic range, and show that broad-scale synchrony of recruitment can occur in freshwater fish populations as well as those from marine systems.

Tree growth and climate in the Pacific Northwest, North America: a broad-scale analysis of changing growth environments

Treesearch

Whitney L. Albright; David L. Peterson

2013-01-01

Climate change in the 21st century will affect tree growth in the Pacific Northwest region of North America, although complex climate–growth relationships make it difficult to identify how radial growth will respond across different species distributions. We used a novel method to examine potential growth responses to climate change at a broad geographical scale with a...

Directed self-assembly of block copolymer films on atomically-thin graphene chemical patterns

DOE PAGES

Chang, Tzu-Hsuan; Xiong, Shisheng; Jacobberger, Robert M.; ...

2016-08-16

Directed self-assembly of block copolymers is a scalable method to fabricate well-ordered patterns over the wafer scale with feature sizes below the resolution of conventional lithography. Typically, lithographically-defined prepatterns with varying chemical contrast are used to rationally guide the assembly of block copolymers. The directed self-assembly to obtain accurate registration and alignment is largely influenced by the assembly kinetics. Furthermore, a considerably broad processing window is favored for industrial manufacturing. Using an atomically-thin layer of graphene on germanium, after two simple processing steps, we create a novel chemical pattern to direct the assembly of polystyreneblock-poly(methyl methacrylate). Faster assembly kinetics aremore » observed on graphene/germanium chemical patterns than on conventional chemical patterns based on polymer mats and brushes. This new chemical pattern allows for assembly on a wide range of guiding periods and along designed 90° bending structures. We also achieve density multiplication by a factor of 10, greatly enhancing the pattern resolution. Lastly, the rapid assembly kinetics, minimal topography, and broad processing window demonstrate the advantages of inorganic chemical patterns composed of hard surfaces.« less

Facile Synthesis of Monodispersed Polysulfide Spheres for Building Structural Colors with High Color Visibility and Broad Viewing Angle.

PubMed

Li, Feihu; Tang, Bingtao; Wu, Suli; Zhang, Shufen

2017-01-01

The synthesis and assembly of monodispersed colloidal spheres are currently the subject of extensive investigation to fabricate artificial structural color materials. However, artificial structural colors from general colloidal crystals still suffer from the low color visibility and strong viewing angle dependence which seriously hinder their practical application in paints, colorimetric sensors, and color displays. Herein, monodispersed polysulfide (PSF) spheres with intrinsic high refractive index (as high as 1.858) and light-absorbing characteristics are designed, synthesized through a facile polycondensation and crosslinking process between sodium disulfide and 1,2,3-trichloropropane. Owing to their high monodispersity, sufficient surface charge, and good dispersion stability, the PSF spheres can be assembled into large-scale and high-quality 3D photonic crystals. More importantly, high structural color visibility and broad viewing angle are easily achieved because the unique features of PSF can remarkably enhance the relative reflectivity and eliminate the disturbance of scattering and background light. The results of this study provide a simple and efficient strategy to create structural colors with high color visibility, which is very important for their practical application. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Terahertz circular dichroism spectroscopy of biomolecules

NASA Astrophysics Data System (ADS)

Xu, Jing; Galan, Jhenny; Ramian, Gerald; Savvidis, Pavlos; Scopatz, Anthony; Birge, Robert R.; Allen, S. James; Plaxco, Kevin

2004-02-01

Biopolymers such as proteins, DNA and RNA fold into large, macromolecular chiral structures. As charged macromolecules, they absorb strongly in the terahertz due to large-scale collective vibrational modes; as chiral objects, this absorption should be coupled with significant circular dichroism. Terahertz circular dichroism (TCD) is potentially important as a biospecific sensor, unobscured by spectral features related to abiological material. We have constructed atomistic simulations and elastic continuum models of TCD. These models estimate the magnitude of the TCD and the relation between TCD spectroscopic signatures (zero crossings) and the structure, charge distribution and mechanical properties of biomaterials. A broad band TCD spectrometer based on a polarizing interferometer is developed to explore TCD in biomolecules in aqueous solution. Preliminary results on TCD in lysozyme in water at several terahertz frequencies is presented.

Lophotrochozoan mitochondrial genomes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valles, Yvonne; Boore, Jeffrey L.

2005-10-01

Progress in both molecular techniques and phylogeneticmethods has challenged many of the interpretations of traditionaltaxonomy. One example is in the recognition of the animal superphylumLophotrochozoa (annelids, mollusks, echiurans, platyhelminthes,brachiopods, and other phyla), although the relationships within thisgroup and the inclusion of some phyla remain uncertain. While much ofthis progress in phylogenetic reconstruction has been based on comparingsingle gene sequences, we are beginning to see the potential of comparinglarge-scale features of genomes, such as the relative order of genes.Even though tremendous progress is being made on the sequencedetermination of whole nuclear genomes, the dataset of choice forgenome-level characters for many animalsmore » across a broad taxonomic rangeremains mitochondrial genomes. We review here what is known aboutmitochondrial genomes of the lophotrochozoans and discuss the promisethat this dataset will enable insight into theirrelationships.« less

Multi-phase outflows as probes of AGN accretion history

NASA Astrophysics Data System (ADS)

Nardini, Emanuele; Zubovas, Kastytis

2018-05-01

Powerful outflows with a broad range of properties (such as velocity, ionization, radial scale and mass loss rate) represent a key feature of active galactic nuclei (AGN), even more so since they have been simultaneously revealed also in individual objects. Here we revisit in a simple analytical framework the recent remarkable cases of two ultraluminous infrared quasars, IRAS F11119+3257 and Mrk 231, which allow us to investigate the physical connection between multi-phase AGN outflows across the ladder of distance from the central supermassive black hole (SMBH). We argue that any major deviations from the standard outflow propagation models might encode unique information on the past SMBH accretion history, and briefly discuss how this could help address some controversial aspects of the current picture of AGN feedback.

Local control of the resistivity of graphene through mechanically induced switching of a ferroelectric superlattice

NASA Astrophysics Data System (ADS)

Humed Yusuf, Mohammed; Gura, Anna; Du, Xu; Dawber, Matthew

2017-06-01

We exploit nanoscale mechanically induced switching of an artificially layered ferroelectric material, used as an active substrate, to achieve the local manipulation of the electrical transport properties of graphene. In Graphene Ferroelectric Field Effect Transistors (GFeFETs), the graphene channel’s charge state is controlled by an underlying ferroelectric layer. The tip of an atomic force microscope (AFM) can be used to mechanically ‘write’ nanoscale regions of the graphene channel and ‘read’ off the modulation in the transport behavior. The written features associated with the switching of ferroelectric domains remain polarized until an electrical reset operation is carried out. Our result provides a method for flexible and reversible nano-scale manipulation of the transport properties of a broad class of 2D materials.

Model distribution of Silver Chub (Macrhybopsis storeriana) in western Lake Erie

USGS Publications Warehouse

McKenna, James E.; Castiglione, Chris

2014-01-01

Silver Chub (Macrhybopsis storeriana) was once a common forage fish in Lake Erie but has declined greatly since the 1950s. Identification of optimal and marginal habitats would help conserve and manage this species. We developed neural networks to use broad-scale habitat variables to predict abundance classes of Silver Chub in western Lake Erie, where its largest remaining population exists. Model performance was good, particularly for predicting locations of habitat with the potential to support the highest and lowest abundances of this species. Highest abundances are expected in waters >5 m deep; water depth and distance to coastal habitats were important model features. These models provide initial tools to help conserve this species, but their resolution can be improved with additional data and consideration of other ecological factors.

Guidance and control strategies for aerospace vehicles

NASA Technical Reports Server (NTRS)

Hibey, Joseph L.; Naidu, Desineni S.

1990-01-01

The first part of the report concerns broadly the summary of the work done in the areas of singular perturbations and time scales (SPaTS), aerobraking technology, guidance and aerocruise. The synergistic plane change problem connected with orbital transfer employing aeroassist technology, is addressed. The mission involves transfer from high Earth orbit to low Earth orbit with plane change being performed within the atmosphere. The complete mission consists of a deorbit phase, atmospheric phase, and finally reorbit phase. The atmospheric maneuver is composed of an entry mode, a cruise mode, and finally an exit mode. During the cruise mode, constant altitude and velocity are maintained by means of bank angle control with constant thrust or thrust control with constant bank angle. Comparisons between these two control strategies bring out some interesting features.

WFIRST-AFTA coronagraph shaped pupil masks: design, fabrication, and characterization

NASA Astrophysics Data System (ADS)

Balasubramanian, Kunjithapatham; White, Victor; Yee, Karl; Echternach, Pierre; Muller, Richard; Dickie, Matthew; Cady, Eric; Prada, Camilo Mejia; Ryan, Daniel; Poberezhskiy, Ilya; Kern, Brian; Zhou, Hanying; Krist, John; Nemati, Bijan; Eldorado Riggs, A. J.; Zimmerman, Neil T.; Kasdin, N. Jeremy

2016-01-01

NASA WFIRST-AFTA mission study includes a coronagraph instrument to find and characterize exoplanets. Various types of masks could be employed to suppress the host starlight to about 10-9 level contrast over a broad spectrum to enable the coronagraph mission objectives. Such masks for high-contrast internal coronagraphic imaging require various fabrication technologies to meet a wide range of specifications, including precise shapes, micron scale island features, ultralow reflectivity regions, uniformity, wave front quality, and achromaticity. We present the approaches employed at JPL to produce pupil plane and image plane coronagraph masks by combining electron beam, deep reactive ion etching, and black silicon technologies with illustrative examples of each, highlighting milestone accomplishments from the High Contrast Imaging Testbed at JPL and from the High Contrast Imaging Lab at Princeton University.

Temperature sensing using a Cr:ZnGa2O4 new phosphor

NASA Astrophysics Data System (ADS)

Sharma, S. K.; Glais, E.; Pellerin, M.; Chaneac, C.; Viana, B.

2016-02-01

The luminescence emission of a thermographic phosphor based on trivalent chromium doped ZGO (ZnGa2O4) bulk as well as nanoparticles is here reported. This material has a strong temperature dependence on the optical features such as ratio of their emission bands, bandwidths, bands position as well as the lifetime decay of the Cr3+. This makes this material well suitable as temperature sensor. ZnGa2O4 (ZGO), a normal spinel, exhibits a high brightness persistent luminescence, when doped with Cr3+ ions and shows an emission spectrum centered at 695 nm. At the nanometric scale, ZGO is used for in vivo imaging with a better signal to background ratio than classical fluorescent NIR probes. In this work we investigate the ability of the host to be a new thermographic phosphor. Several optical features are investigated in a broad temperature range (10 K-700 K). A comparison between bulk material and nanoparticles is introduced. The obtained results could be used to determine the optimal design parameters for sensor development.

Can the relativistic light-bending model explain X-ray spectral variations of Seyfert galaxies?

NASA Astrophysics Data System (ADS)

Mizumoto, Misaki; Moriyama, Kotaro; Ebisawa, Ken; Mineshige, Shin; Kawanaka, Norita; Tsujimoto, Masahiro

2018-04-01

Many Seyfert galaxies are known to exhibit Fe-K broad emission line features in their X-ray energy spectra. The observed lines have three distinct features: (1) the line profiles are skewed and show significant low-energy tails, (2) the Fe-K band has low variability, which produces a broad and deep dip in the root-mean-square (rms) spectra, and (3) photons in this band have time lags behind those in the adjacent energy bands with amplitudes of several Rg/c, where Rg is the gravitational radius. The "relativistic light-bending model" is proposed to explain these observed features, where a compact X-ray source ("lamp post") above an extreme Kerr black hole illuminates the innermost area of the accretion disc. In this paper, we critically examine the relativistic light-bending model by computing the rms spectra and the lag features using a ray-tracing technique, when a lamp post moves vertically on the black hole spin axis. As a result, we found that the observed deep rms dip requires that the iron is extremely overabundant (≳10 solar), whereas the observed lag amplitude is consistent with the normal iron abundance. Furthermore, disappearance of the lag in the high-flux state requires a source height as high as ˜40 Rg, which contradicts the relativistically broad emission line feature. Our simulations agree with the data that the reverberation feature moves to lower frequencies with larger source height; however, if this scenario is correct, the simulations predict the detection of a clear Fe-K lag at low frequencies, which is not constrained in the data. Therefore, we conclude that the relativistic light-bending model may not explain the characteristic Fe-K spectral variations in Seyfert galaxies.

Can the relativistic light-bending model explain X-ray spectral variations of Seyfert galaxies?

NASA Astrophysics Data System (ADS)

Mizumoto, Misaki; Moriyama, Kotaro; Ebisawa, Ken; Mineshige, Shin; Kawanaka, Norita; Tsujimoto, Masahiro

2018-06-01

Many Seyfert galaxies are known to exhibit Fe-K broad emission line features in their X-ray energy spectra. The observed lines have three distinct features: (1) the line profiles are skewed and show significant low-energy tails, (2) the Fe-K band has low variability, which produces a broad and deep dip in the root-mean-square (rms) spectra, and (3) photons in this band have time lags behind those in the adjacent energy bands with amplitudes of several Rg/c, where Rg is the gravitational radius. The "relativistic light-bending model" is proposed to explain these observed features, where a compact X-ray source ("lamp post") above an extreme Kerr black hole illuminates the innermost area of the accretion disc. In this paper, we critically examine the relativistic light-bending model by computing the rms spectra and the lag features using a ray-tracing technique, when a lamp post moves vertically on the black hole spin axis. As a result, we found that the observed deep rms dip requires that the iron is extremely overabundant (≳10 solar), whereas the observed lag amplitude is consistent with the normal iron abundance. Furthermore, disappearance of the lag in the high-flux state requires a source height as high as ˜40 Rg, which contradicts the relativistically broad emission line feature. Our simulations agree with the data that the reverberation feature moves to lower frequencies with larger source height; however, if this scenario is correct, the simulations predict the detection of a clear Fe-K lag at low frequencies, which is not constrained in the data. Therefore, we conclude that the relativistic light-bending model may not explain the characteristic Fe-K spectral variations in Seyfert galaxies.

Mass support for global climate agreements depends on institutional design.

PubMed

Bechtel, Michael M; Scheve, Kenneth F

2013-08-20

Effective climate mitigation requires international cooperation, and these global efforts need broad public support to be sustainable over the long run. We provide estimates of public support for different types of climate agreements in France, Germany, the United Kingdom, and the United States. Using data from a large-scale experimental survey, we explore how three key dimensions of global climate cooperation--costs and distribution, participation, and enforcement--affect individuals' willingness to support these international efforts. We find that design features have significant effects on public support. Specifically, our results indicate that support is higher for global climate agreements that involve lower costs, distribute costs according to prominent fairness principles, encompass more countries, and include a small sanction if a country fails to meet its emissions reduction targets. In contrast to well-documented baseline differences in public support for climate mitigation efforts, opinion responds similarly to changes in climate policy design in all four countries. We also find that the effects of institutional design features can bring about decisive changes in the level of public support for a global climate agreement. Moreover, the results appear consistent with the view that the sensitivity of public support to design features reflects underlying norms of reciprocity and individuals' beliefs about the potential effectiveness of specific agreements.

A systematic literature review of diabetes self-management education features to improve diabetes education in women of Black African/Caribbean and Hispanic/Latin American ethnicity.

PubMed

Gucciardi, Enza; Chan, Vivian Wing-Sheung; Manuel, Lisa; Sidani, Souraya

2013-08-01

This systematic literature review aims to identify diabetes self-management education (DSME) features to improve diabetes education for Black African/Caribbean and Hispanic/Latin American women with Type 2 diabetes mellitus. We conducted a literature search in six health databases for randomized controlled trials and comparative studies. Success rates of intervention features were calculated based on effectiveness in improving glycosolated hemoglobin (HbA1c), anthropometrics, physical activity, or diet outcomes. Calculations of rate differences assessed whether an intervention feature positively or negatively affected an outcome. From 13 studies included in our analysis, we identified 38 intervention features in relation to their success with an outcome. Five intervention features had positive rate differences across at least three outcomes: hospital-based interventions, group interventions, the use of situational problem-solving, frequent sessions, and incorporating dietitians as interventionists. Six intervention features had high positive rate differences (i.e. ≥50%) on specific outcomes. Different DSME intervention features may influence broad and specific self-management outcomes for women of African/Caribbean and Hispanic/Latin ethnicity. With the emphasis on patient-centered care, patients and care providers can consider options based on DSME intervention features for its broad and specific impact on outcomes to potentially make programming more effective. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Protein-directed assembly of arbitrary three-dimensional nanoporous silica architectures.

PubMed

Khripin, Constantine Y; Pristinski, Denis; Dunphy, Darren R; Brinker, C Jeffrey; Kaehr, Bryan

2011-02-22

Through precise control of nanoscale building blocks, such as proteins and polyamines, silica condensing microorganisms are able to create intricate mineral structures displaying hierarchical features from nano- to millimeter-length scales. The creation of artificial structures of similar characteristics is facilitated through biomimetic approaches, for instance, by first creating a bioscaffold comprised of silica condensing moieties which, in turn, govern silica deposition into three-dimensional (3D) structures. In this work, we demonstrate a protein-directed approach to template silica into true arbitrary 3D architectures by employing cross-linked protein hydrogels to controllably direct silica condensation. Protein hydrogels are fabricated using multiphoton lithography, which enables user-defined control over template features in three dimensions. Silica deposition, under acidic conditions, proceeds throughout protein hydrogel templates via flocculation of silica nanoparticles by protein molecules, as indicated by dynamic light scattering (DLS) and time-dependent measurements of elastic modulus. Following silica deposition, the protein template can be removed using mild thermal processing yielding high surface area (625 m(2)/g) porous silica replicas that do not undergo significant volume change compared to the starting template. We demonstrate the capabilities of this approach to create bioinspired silica microstructures displaying hierarchical features over broad length scales and the infiltration/functionalization capabilities of the nanoporous silica matrix by laser printing a 3D gold image within a 3D silica matrix. This work provides a foundation to potentially understand and mimic biogenic silica condensation under the constraints of user-defined biotemplates and further should enable a wide range of complex inorganic architectures to be explored using silica transformational chemistries, for instance silica to silicon, as demonstrated herein.

Broad-scale trophic shift in the pelagic North Pacific revealed by an oceanic seabird.

PubMed

Ostrom, Peggy H; Wiley, Anne E; James, Helen F; Rossman, Sam; Walker, William A; Zipkin, Elise F; Chikaraishi, Yoshito

2017-03-29

Human-induced ecological change in the open oceans appears to be accelerating. Fisheries, climate change and elevated nutrient inputs are variously blamed, at least in part, for altering oceanic ecosystems. Yet it is challenging to assess the extent of anthropogenic change in the open oceans, where historical records of ecological conditions are sparse, and the geographical scale is immense. We developed millennial-scale amino acid nitrogen isotope records preserved in ancient animal remains to understand changes in food web structure and nutrient regimes in the oceanic realm of the North Pacific Ocean (NPO). Our millennial-scale isotope records of amino acids in bone collagen in a wide-ranging oceanic seabird, the Hawaiian petrel ( Pterodroma sandwichensis ), showed that trophic level declined over time. The amino acid records do not support a broad-scale increase in nitrogen fixation in the North Pacific subtropical gyre, rejecting an earlier interpretation based on bulk and amino acid specific δ 15 N chronologies for Hawaiian deep-sea corals and bulk δ 15 N chronologies for the Hawaiian petrel. Rather, our work suggests that the food web structure in the NPO has shifted at a broad geographical scale, a phenomenon potentially related to industrial fishing. © 2017 The Author(s).

Domains and facets: hierarchical personality assessment using the revised NEO personality inventory.

PubMed

Costa, P T; McCrae, R R

1995-02-01

Personality traits are organized hierarchically, with narrow, specific traits combining to define broad, global factors. The Revised NEO Personality Inventory (NEO-PI-R; Costa & McCrae, 1992c) assesses personality at both levels, with six specific facet scales in each of five broad domains. This article describes conceptual issues in specifying facets of a domain and reports evidence on the validity of NEO-PI-R facet scales. Facet analysis-the interpretation of a scale in terms of the specific facets with which it correlates-is illustrated using alternative measures of the five-factor model and occupational scales. Finally, the hierarchical interpretation of personality profiles is discussed. Interpretation on the domain level yields a rapid understanding of the individual interpretation of specific facet scales gives a more detailed assessment.

System and method for the detection of anomalies in an image

DOEpatents

Prasad, Lakshman; Swaminarayan, Sriram

2013-09-03

Preferred aspects of the present invention can include receiving a digital image at a processor; segmenting the digital image into a hierarchy of feature layers comprising one or more fine-scale features defining a foreground object embedded in one or more coarser-scale features defining a background to the one or more fine-scale features in the segmentation hierarchy; detecting a first fine-scale foreground feature as an anomaly with respect to a first background feature within which it is embedded; and constructing an anomalous feature layer by synthesizing spatially contiguous anomalous fine-scale features. Additional preferred aspects of the present invention can include detecting non-pervasive changes between sets of images in response at least in part to one or more difference images between the sets of images.

Large-area Soil Moisture Surveys Using a Cosmic-ray Rover: Approaches and Results from Australia

NASA Astrophysics Data System (ADS)

Hawdon, A. A.; McJannet, D. L.; Renzullo, L. J.; Baker, B.; Searle, R.

2017-12-01

Recent improvements in satellite instrumentation has increased the resolution and frequency of soil moisture observations, and this in turn has supported the development of higher resolution land surface process models. Calibration and validation of these products is restricted by the mismatch of scales between remotely sensed and contemporary ground based observations. Although the cosmic ray neutron soil moisture probe can provide estimates soil moisture at a scale useful for the calibration and validation purposes, it is spatially limited to a single, fixed location. This scaling issue has been addressed with the development of mobile soil moisture monitoring systems that utilizes the cosmic ray neutron method, typically referred to as a `rover'. This manuscript describes a project designed to develop approaches for undertaking rover surveys to produce soil moisture estimates at scales comparable to satellite observations and land surface process models. A custom designed, trailer-mounted rover was used to conduct repeat surveys at two scales in the Mallee region of Victoria, Australia. A broad scale survey was conducted at 36 x 36 km covering an area of a standard SMAP pixel and an intensive scale survey was conducted over a 10 x 10 km portion of the broad scale survey, which is at a scale equivalent to that used for national water balance modelling. We will describe the design of the rover, the methods used for converting neutron counts into soil moisture and discuss factors controlling soil moisture variability. We found that the intensive scale rover surveys produced reliable soil moisture estimates at 1 km resolution and the broad scale at 9 km resolution. We conclude that these products are well suited for future analysis of satellite soil moisture retrievals and finer scale soil moisture models.

Comparative anatomy, morphology, and molecular phylogenetics of the African genus Satanocrater (Acanthaceae).

PubMed

Tripp, Erin A; Fatimah, Siti

2012-06-01

Anatomical and morphological features of Satanocrater were studied to test hypotheses of xeric adaptations in the genus, which is endemic to arid tropical Africa. These features, together with molecular data, were used to test the phylogenetic placement of Satanocrater within the large plant family Acanthaceae. We undertook a comparative study of four species of Satanocrater. Carbon isotope ratios were generated to test a hypothesis of C(4) photosynthesis. Molecular data from chloroplast (trnG-trnS, trnG-trnR, psbA-trnH) and nuclear (Eif3E) loci were used to test the placement of Satanocrater within Acanthaceae. Anatomical features reflecting xeric adaptations of species of Satanocrater included a thick-walled epidermis, thick cuticle, abundant trichomes and glandular scales, stomata overarched by subsidiary cells, tightly packed mesophyll cells, and well-developed palisade parenchyma on both leaf surfaces. Although two species had enlarged bundle sheath cells, a feature often implicated in C(4) photosynthesis, isotope ratios indicated all species of Satanocrater use the C(3) pathway. Molecular data resolved Satanocrater within tribe Ruellieae with strong support. Within Ruellieae, our data suggest that pollen morphology of Satanocrater may represent an intermediate stage in a transition series. Anatomical and morphological features of Satanocrater reflect adaptation to xeric environments and add new information about the biology of xerophytes. Morphological and molecular data place Satanocrater in the tribe Ruellieae with confidence. This study adds to our capacity to test hypotheses of broad evolutionary and ecological interest in a diverse and important family of flowering plants.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sakaguchi, Hidetsugu; Malomed, Boris A.

We study ordinary solitons and gap solitons (GS's) in the framework of the one-dimensional Gross-Pitaevskii equation (GPE) with a combination of both linear and nonlinear lattice potentials. The main points of the analysis are the effects of (in)commensurability between the lattices, the development of analytical methods, viz., the variational approximation (VA) for narrow ordinary solitons and various forms of the averaging method for broad solitons of both types, and also the study of the mobility of the solitons. Under the direct commensurability (equal periods of the lattices, L{sub lin}=L{sub nonlin}), the family of ordinary solitons is similar to its counterpartmore » in the GPE without external potentials. In the case of the subharmonic commensurability with L{sub lin}=(1/2)L{sub nonlin}, or incommensurability, there is an existence threshold for the ordinary solitons and the scaling relation between their amplitude and width is different from that in the absence of the potentials. GS families demonstrate a bistability unless the direct commensurability takes place. Specific scaling relations are found for them as well. Ordinary solitons can be readily set in motion by kicking. GS's are also mobile and feature inelastic collisions. The analytical approximations are shown to be quite accurate, predicting correct scaling relations for the soliton families in different cases. The stability of the ordinary solitons is fully determined by the Vakhitov-Kolokolov (VK) criterion (i.e., a negative slope in the dependence between the solitons's chemical potential mu and norm N). The stability of GS families obeys an inverted ('anti-VK') criterion dmu/dN>0, which is explained by the approximation based on the averaging method. The present system provides for the unique possibility to check the anti-VK criterion, as mu(N) dependencies for GS's feature turning points except in the case of direct commensurability.« less

Environmental characteristics drive variation in Amazonian understorey bird assemblages

PubMed Central

Magnusson, William E.; Anderson, Marti J.; Schlegel, Martin; Pe’er, Guy; Henle, Klaus

2017-01-01

Tropical bird assemblages display patterns of high alpha and beta diversity and, as tropical birds exhibit strong habitat specificity, their spatial distributions are generally assumed to be driven primarily by environmental heterogeneity and interspecific interactions. However, spatial distributions of some Amazonian forest birds are also often restricted by large rivers and other large-scale topographic features, suggesting that dispersal limitation may also play a role in driving species’ turnover. In this study, we evaluated the effects of environmental characteristics, topographic and spatial variables on variation in local assemblage structure and diversity of birds in an old-growth forest in central Amazonia. Birds were mist-netted in 72 plots distributed systematically across a 10,000 ha reserve in each of three years. Alpha diversity remained stable through time, but species composition changed. Spatial variation in bird-assemblage structure was significantly related to environmental and topographic variables but not strongly related to spatial variables. At a broad scale, we found bird assemblages to be significantly distinct between two watersheds that are divided by a central ridgeline. We did not detect an effect of the ridgeline per se in driving these patterns, indicating that most birds are able to fly across it, and that differences in assemblage structure between watersheds may be due to unmeasured environmental variables or unique combinations of measured variables. Our study indicates that complex geography and landscape features can act together with environmental variables to drive changes in the diversity and composition of tropical bird assemblages at local scales, but highlights that we still know very little about what makes different parts of tropical forest suitable for different species. PMID:28225774

Spatial modeling of agricultural land use change at global scale

NASA Astrophysics Data System (ADS)

Meiyappan, P.; Dalton, M.; O'Neill, B. C.; Jain, A. K.

2014-11-01

Long-term modeling of agricultural land use is central in global scale assessments of climate change, food security, biodiversity, and climate adaptation and mitigation policies. We present a global-scale dynamic land use allocation model and show that it can reproduce the broad spatial features of the past 100 years of evolution of cropland and pastureland patterns. The modeling approach integrates economic theory, observed land use history, and data on both socioeconomic and biophysical determinants of land use change, and estimates relationships using long-term historical data, thereby making it suitable for long-term projections. The underlying economic motivation is maximization of expected profits by hypothesized landowners within each grid cell. The model predicts fractional land use for cropland and pastureland within each grid cell based on socioeconomic and biophysical driving factors that change with time. The model explicitly incorporates the following key features: (1) land use competition, (2) spatial heterogeneity in the nature of driving factors across geographic regions, (3) spatial heterogeneity in the relative importance of driving factors and previous land use patterns in determining land use allocation, and (4) spatial and temporal autocorrelation in land use patterns. We show that land use allocation approaches based solely on previous land use history (but disregarding the impact of driving factors), or those accounting for both land use history and driving factors by mechanistically fitting models for the spatial processes of land use change do not reproduce well long-term historical land use patterns. With an example application to the terrestrial carbon cycle, we show that such inaccuracies in land use allocation can translate into significant implications for global environmental assessments. The modeling approach and its evaluation provide an example that can be useful to the land use, Integrated Assessment, and the Earth system modeling communities.

Assessing environmental features related to mental health: a reliability study of visual streetscape images.

PubMed

Wu, Yu-Tzu; Nash, Paul; Barnes, Linda E; Minett, Thais; Matthews, Fiona E; Jones, Andy; Brayne, Carol

2014-10-22

An association between depressive symptoms and features of built environment has been reported in the literature. A remaining research challenge is the development of methods to efficiently capture pertinent environmental features in relevant study settings. Visual streetscape images have been used to replace traditional physical audits and directly observe the built environment of communities. The aim of this work is to examine the inter-method reliability of the two audit methods for assessing community environments with a specific focus on physical features related to mental health. Forty-eight postcodes in urban and rural areas of Cambridgeshire, England were randomly selected from an alphabetical list of streets hosted on a UK property website. The assessment was conducted in July and August 2012 by both physical and visual image audits based on the items in Residential Environment Assessment Tool (REAT), an observational instrument targeting the micro-scale environmental features related to mental health in UK postcodes. The assessor used the images of Google Street View and virtually "walked through" the streets to conduct the property and street level assessments. Gwet's AC1 coefficients and Bland-Altman plots were used to compare the concordance of two audits. The results of conducting the REAT by visual image audits generally correspond to direct observations. More variations were found in property level items regarding physical incivilities, with broad limits of agreement which importantly lead to most of the variation in the overall REAT score. Postcodes in urban areas had lower consistency between the two methods than rural areas. Google Street View has the potential to assess environmental features related to mental health with fair reliability and provide a less resource intense method of assessing community environments than physical audits.

Climate-driven polar motion: 2003-2015.

PubMed

Adhikari, Surendra; Ivins, Erik R

2016-04-01

Earth's spin axis has been wandering along the Greenwich meridian since about 2000, representing a 75° eastward shift from its long-term drift direction. The past 115 years have seen unequivocal evidence for a quasi-decadal periodicity, and these motions persist throughout the recent record of pole position, in spite of the new drift direction. We analyze space geodetic and satellite gravimetric data for the period 2003-2015 to show that all of the main features of polar motion are explained by global-scale continent-ocean mass transport. The changes in terrestrial water storage (TWS) and global cryosphere together explain nearly the entire amplitude (83 ± 23%) and mean directional shift (within 5.9° ± 7.6°) of the observed motion. We also find that the TWS variability fully explains the decadal-like changes in polar motion observed during the study period, thus offering a clue to resolving the long-standing quest for determining the origins of decadal oscillations. This newly discovered link between polar motion and global-scale TWS variability has broad implications for the study of past and future climate.

A New Index for the MMPI-2 Test for Detecting Dissimulation in Forensic Evaluations: A Pilot Study.

PubMed

Martino, Vito; Grattagliano, Ignazio; Bosco, Andrea; Massaro, Ylenia; Lisi, Andrea; Campobasso, Filippo; Marchitelli, Maria Alessia; Catanesi, Roberto

2016-01-01

This pilot study is the starting point of a potentially broad research project aimed at identifying new strategies for assessing malingering during forensic evaluations. The forensic group was comprised of 67 males who were seeking some sort of certification (e.g., adoption, child custody, driver's license, issuance of gun permits, etc.); the nonforensic group was comprised of 62 healthy male volunteers. Each participant was administered the MMPI-2. Statistical analyses were conducted on obtained scores of 48 MMPI-2 scales. In the first step, parametric statistics were adopted to identify the best combination of MMPI-2 scales that differentiated the two groups of participants. In the second step, frequency-based, nonparametric methods were used for diagnostic purposes. A model that utilized the best three predictors ("7-Pt", "L," and "1-Hs") was developed and used to calculate the Forensic Evaluation Dissimulation Index (FEDI), which features satisfactory diagnostic accuracy (0.9), sensitivity (0.82), specificity (0.81), and likelihood ratio indices (LR+ = 4.32; LR- = 0.22). © 2015 American Academy of Forensic Sciences.

Climate-driven polar motion: 2003–2015

PubMed Central

Adhikari, Surendra; Ivins, Erik R.

2016-01-01

Earth’s spin axis has been wandering along the Greenwich meridian since about 2000, representing a 75° eastward shift from its long-term drift direction. The past 115 years have seen unequivocal evidence for a quasi-decadal periodicity, and these motions persist throughout the recent record of pole position, in spite of the new drift direction. We analyze space geodetic and satellite gravimetric data for the period 2003–2015 to show that all of the main features of polar motion are explained by global-scale continent-ocean mass transport. The changes in terrestrial water storage (TWS) and global cryosphere together explain nearly the entire amplitude (83 ± 23%) and mean directional shift (within 5.9° ± 7.6°) of the observed motion. We also find that the TWS variability fully explains the decadal-like changes in polar motion observed during the study period, thus offering a clue to resolving the long-standing quest for determining the origins of decadal oscillations. This newly discovered link between polar motion and global-scale TWS variability has broad implications for the study of past and future climate. PMID:27152348

Separating spatial search and efficiency rates as components of predation risk

PubMed Central

DeCesare, Nicholas J.

2012-01-01

Predation risk is an important driver of ecosystems, and local spatial variation in risk can have population-level consequences by affecting multiple components of the predation process. I use resource selection and proportional hazard time-to-event modelling to assess the spatial drivers of two key components of risk—the search rate (i.e. aggregative response) and predation efficiency rate (i.e. functional response)—imposed by wolves (Canis lupus) in a multi-prey system. In my study area, both components of risk increased according to topographic variation, but anthropogenic features affected only the search rate. Predicted models of the cumulative hazard, or risk of a kill, underlying wolf search paths validated well with broad-scale variation in kill rates, suggesting that spatial hazard models provide a means of scaling up from local heterogeneity in predation risk to population-level dynamics in predator–prey systems. Additionally, I estimated an integrated model of relative spatial predation risk as the product of the search and efficiency rates, combining the distinct contributions of spatial heterogeneity to each component of risk. PMID:22977145

The interplay between anxiety and social functioning in Williams syndrome.

PubMed

Riby, Deborah M; Hanley, Mary; Kirk, Hannah; Clark, Fiona; Little, Katie; Fleck, Ruth; Janes, Emily; Kelso, Linzi; O'Kane, Fionnuala; Cole-Fletcher, Rachel; Allday, Marianne Hvistendahl; Hocking, Darren; Cornish, Kim; Rodgers, Jacqui

2014-05-01

The developmental disorder Williams syndrome (WS) has been associated with an atypical social profile of hyper-sociability and heightened social sensitivity across the developmental spectrum. In addition, previous research suggests that both children and adults with WS have a predisposition towards anxiety. The current research aimed to explore the profiles of social behaviour and anxiety across a broad age range of individuals with the disorder (n = 59, ages 6-36 years). We used insights from parental reports on two frequently used measures, the Spence Children's Anxiety Scale (SCAS-P) and the Social Responsiveness Scale (SRS). Severity of anxiety was correlated with a greater degree of social dysfunction as measured by the SRS in this group. We split the group according to high or low anxiety as measured by the SCAS-P and explored the profile of social skills for the two groups. Individuals high and low in anxiety differed in their social abilities. The results emphasise the need to address anxiety issues in this disorder and to consider how components of anxiety might relate to other features of the disorder.

Convective Propagation Characteristics Using a Simple Representation of Convective Organization

NASA Astrophysics Data System (ADS)

Neale, R. B.; Mapes, B. E.

2016-12-01

Observed equatorial wave propagation is intimately linked to convective organization and it's coupling to features of the larger-scale flow. In this talk we a use simple 4 level model to accommodate vertical modes of a mass flux convection scheme (shallow, mid-level and deep). Two paradigms of convection are used to represent convective processes. One that has only both random (unorganized) diagnosed fluctuations of convective properties and one with organized fluctuations of convective properties that are amplified by previously existing convection and has an explicit moistening impact on the local convecting environment We show a series of model simulations in single-column, 2D and 3D configurations, where the role of convective organization in wave propagation is shown to be fundamental. For the optimal choice of parameters linking organization to local atmospheric state, a broad array of convective wave propagation emerges. Interestingly the key characteristics of propagating modes are the low-level moistening followed by deep convection followed by mature 'large-scale' heating. This organization structure appears to hold firm across timescales from 5-day wave disturbances to MJO-like wave propagation.

Investigating a link between large and small-scale chaos features on Europa

NASA Astrophysics Data System (ADS)

Tognetti, L.; Rhoden, A.; Nelson, D. M.

2017-12-01

Chaos is one of the most recognizable, and studied, features on Europa's surface. Most models of chaos formation invoke liquid water at shallow depths within the ice shell; the liquid destabilizes the overlying ice layer, breaking it into mobile rafts and destroying pre-existing terrain. This class of model has been applied to both large-scale chaos like Conamara and small-scale features (i.e. microchaos), which are typically <10 km in diameter. Currently unknown, however, is whether both large-scale and small-scale features are produced together, e.g. through a network of smaller sills linked to a larger liquid water pocket. If microchaos features do form as satellites of large-scale chaos features, we would expect a drop off in the number density of microchaos with increasing distance from the large chaos feature; the trend should not be observed in regions without large-scale chaos features. Here, we test the hypothesis that large chaos features create "satellite" systems of smaller chaos features. Either outcome will help us better understand the relationship between large-scale chaos and microchaos. We focus first on regions surrounding the large chaos features Conamara and Murias (e.g. the Mitten). We map all chaos features within 90,000 sq km of the main chaos feature and assign each one a ranking (High Confidence, Probable, or Low Confidence) based on the observed characteristics of each feature. In particular, we look for a distinct boundary, loss of preexisting terrain, the existence of rafts or blocks, and the overall smoothness of the feature. We also note features that are chaos-like but lack sufficient characteristics to be classified as chaos. We then apply the same criteria to map microchaos features in regions of similar area ( 90,000 sq km) that lack large chaos features. By plotting the distribution of microchaos with distance from the center point of the large chaos feature or the mapping region (for the cases without a large feature), we determine whether there is a distinct signature linking large-scale chaos features with nearby microchaos. We discuss the implications of these results on the process of chaos formation and the extent of liquid water within Europa's ice shell.

Psychological Adjustment and Sibling Relationships in Siblings of Children with Autism Spectrum Disorders: Environmental Stressors and the Broad Autism Phenotype

ERIC Educational Resources Information Center

Petalas, Michael A.; Hastings, Richard P.; Nash, Susie; Hall, Louise M.; Joannidi, Helen; Dowey, Alan

2012-01-01

Research with siblings of children with Autism Spectrum Disorders (ASD) suggests that they may be at increased risk for behavioural and emotional problems and relatively poor sibling relationships. This study investigated a diathesis-stress model, whereby the presence of Broad Autism Phenotype features in the typically developing siblings might…

Distinctive Features of Schools in Multiple Deprived Communities in South Africa: Implications for Policy and Leadership

ERIC Educational Resources Information Center

Maringe, Felix; Masinire, Alfred; Nkambule, Thabisile

2015-01-01

Multiple deprivation affects a large proportion of schools in South Africa. The past 20 years of democracy have tended to focus on reforming education through curricula revision and a raft of redress-directed interventions, through the application of what we call a broad-brush policy approach. The paper argues that a broad-brush policy application…

Putting Parameters in Their Proper Place

ERIC Educational Resources Information Center

Montrul, Silvina; Yoon, James

2009-01-01

Seeing the logical problem of second language acquisition as that of primarily selecting and re-assembling bundles of features anew, Lardiere proposes to dispense with the deductive learning approach and its broad range of consequences subsumed under the concept of parameters. While we agree that feature assembly captures more precisely the…

The Footprint of Continental-Scale Ocean Currents on the Biogeography of Seaweeds

PubMed Central

Wernberg, Thomas; Thomsen, Mads S.; Connell, Sean D.; Russell, Bayden D.; Waters, Jonathan M.; Zuccarello, Giuseppe C.; Kraft, Gerald T.; Sanderson, Craig; West, John A.; Gurgel, Carlos F. D.

2013-01-01

Explaining spatial patterns of biological organisation remains a central challenge for biogeographic studies. In marine systems, large-scale ocean currents can modify broad-scale biological patterns by simultaneously connecting environmental (e.g. temperature, salinity and nutrients) and biological (e.g. amounts and types of dispersed propagules) properties of adjacent and distant regions. For example, steep environmental gradients and highly variable, disrupted flow should lead to heterogeneity in regional communities and high species turnover. In this study, we investigated the possible imprint of the Leeuwin (LC) and East Australia (EAC) Currents on seaweed communities across ~7,000 km of coastline in temperate Australia. These currents flow poleward along the west and east coasts of Australia, respectively, but have markedly different characteristics. We tested the hypothesis that, regional seaweed communities show serial change in the direction of current flow and that, because the LC is characterised by a weaker temperature gradient and more un-interrupted along-shore flow compared to the EAC, then coasts influenced by the LC have less variable seaweed communities and lower species turnover across regions than the EAC. This hypothesis was supported. We suggest that this pattern is likely caused by a combination of seaweed temperature tolerances and current-driven dispersal. In conclusion, our findings support the idea that the characteristics of continental-scale currents can influence regional community organisation, and that the coupling of ocean currents and marine biological structure is a general feature that transcends taxa and spatial scales. PMID:24260352

PIPER: Performance Insight for Programmers and Exascale Runtimes: Guiding the Development of the Exascale Software Stack

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mellor-Crummey, John

The PIPER project set out to develop methodologies and software for measurement, analysis, attribution, and presentation of performance data for extreme-scale systems. Goals of the project were to support analysis of massive multi-scale parallelism, heterogeneous architectures, multi-faceted performance concerns, and to support both post-mortem performance analysis to identify program features that contribute to problematic performance and on-line performance analysis to drive adaptation. This final report summarizes the research and development activity at Rice University as part of the PIPER project. Producing a complete suite of performance tools for exascale platforms during the course of this project was impossible since bothmore » hardware and software for exascale systems is still a moving target. For that reason, the project focused broadly on the development of new techniques for measurement and analysis of performance on modern parallel architectures, enhancements to HPCToolkit’s software infrastructure to support our research goals or use on sophisticated applications, engaging developers of multithreaded runtimes to explore how support for tools should be integrated into their designs, engaging operating system developers with feature requests for enhanced monitoring support, engaging vendors with requests that they add hardware measure- ment capabilities and software interfaces needed by tools as they design new components of HPC platforms including processors, accelerators and networks, and finally collaborations with partners interested in using HPCToolkit to analyze and tune scalable parallel applications.« less

Anomalous photoluminescence in InP1−xBix

PubMed Central

Wu, Xiaoyan; Chen, Xiren; Pan, Wenwu; Wang, Peng; Zhang, Liyao; Li, Yaoyao; Wang, Hailong; Wang, Kai; Shao, Jun; Wang, Shumin

2016-01-01

Low temperature photoluminescence (PL) from InP1−xBix thin films with Bi concentrations in the 0–2.49% range reveals anomalous spectral features with strong and very broad (linewidth of 700 nm) PL signals compared to other bismide alloys. Multiple transitions are observed and their energy levels are found much smaller than the band-gap measured from absorption measurements. These transitions are related to deep levels confirmed by deep level transient spectroscopy, which effectively trap free holes and enhance radiative recombination. The broad luminescence feature is beneficial for making super-luminescence diodes, which can theoretically enhance spatial resolution beyond 1 μm in optical coherent tomography (OCT). PMID:27291823

Social cognition, social skill, and the broad autism phenotype.

PubMed

Sasson, Noah J; Nowlin, Rachel B; Pinkham, Amy E

2013-11-01

Social-cognitive deficits differentiate parents with the "broad autism phenotype" from non-broad autism phenotype parents more robustly than other neuropsychological features of autism, suggesting that this domain may be particularly informative for identifying genetic and brain processes associated with the phenotype. The current study examined whether the social-cognitive deficits associated with the broad autism phenotype extend to the general population and relate to reduced social skill. A total of 74 undergraduates completed the Broad Autism Phenotype Questionnaire, three standardized social-cognitive tasks, and a live social interaction with an unfamiliar research assistant. Social broad autism phenotype traits were significantly associated with deficits in social cognition and reduced social skill. In addition, the relationship between social broad autism phenotype traits and social skill was partially mediated by social cognition, suggesting that the reduced interpersonal ability associated with the broad autism phenotype occurs in part because of poorer social-cognitive ability. Together, these findings indicate that the impairments in social cognition and social skill that characterize autism spectrum disorder extend in milder forms to the broad autism phenotype in the general population and suggest a framework for understanding how social broad autism phenotype traits may manifest in diminished social ability.

Surface wave tomography of North America and the Caribbean using global and regional broad-band networks: Phase velocity maps and limitations of ray theory

USGS Publications Warehouse

Godey, S.; Snieder, R.; Villasenor, A.; Benz, H.M.

2003-01-01

We present phase velocity maps of fundamental mode Rayleigh waves across the North American and Caribbean plates. Our data set consists of 1846 waveforms from 172 events recorded at 91 broad-band stations operating in North America. We compute phase velocity maps in four narrow period bands between 50 and 150 s using a non-linear waveform inversion method that solves for phase velocity perturbations relative to a reference Earth model (PREM). Our results show a strong velocity contrast between high velocities beneath the stable North American craton, and lower velocities in the tectonically active western margin, in agreement with other regional and global surface wave tomography studies. We perform detailed comparisons with global model results, which display good agreement between phase velocity maps in the location and amplitude of the anomalies. However, forward modelling shows that regional maps are more accurate for predicting waveforms. In addition, at long periods, the amplitude of the velocity anomalies imaged in our regional phase velocity maps is three time larger than in global phase velocity models. This amplitude factor is necessary to explain the data accurately, showing that regional models provide a better image of velocity structures. Synthetic tests show that the raypath coverage used in this study enables one to resolve velocity features of the order of 800-1000 km. However, only larger length-scale features are observed in the phase velocity maps. The limitation in resolution of our maps can be attributed to the wave propagation theory used in the inversion. Ray theory does not account for off-great-circle ray propagation effects, such as ray bending or scattering. For wavelengths less than 1000 km, scattering effects are significant and may need to be considered.

Mid-level perceptual features distinguish objects of different real-world sizes.

PubMed

Long, Bria; Konkle, Talia; Cohen, Michael A; Alvarez, George A

2016-01-01

Understanding how perceptual and conceptual representations are connected is a fundamental goal of cognitive science. Here, we focus on a broad conceptual distinction that constrains how we interact with objects--real-world size. Although there appear to be clear perceptual correlates for basic-level categories (apples look like other apples, oranges look like other oranges), the perceptual correlates of broader categorical distinctions are largely unexplored, i.e., do small objects look like other small objects? Because there are many kinds of small objects (e.g., cups, keys), there may be no reliable perceptual features that distinguish them from big objects (e.g., cars, tables). Contrary to this intuition, we demonstrated that big and small objects have reliable perceptual differences that can be extracted by early stages of visual processing. In a series of visual search studies, participants found target objects faster when the distractor objects differed in real-world size. These results held when we broadly sampled big and small objects, when we controlled for low-level features and image statistics, and when we reduced objects to texforms--unrecognizable textures that loosely preserve an object's form. However, this effect was absent when we used more basic textures. These results demonstrate that big and small objects have reliably different mid-level perceptual features, and suggest that early perceptual information about broad-category membership may influence downstream object perception, recognition, and categorization processes. (c) 2015 APA, all rights reserved).

CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

PubMed

Jo, Sunhwan; Cheng, Xi; Islam, Shahidul M; Huang, Lei; Rui, Huan; Zhu, Allen; Lee, Hui Sun; Qi, Yifei; Han, Wei; Vanommeslaeghe, Kenno; MacKerell, Alexander D; Roux, Benoît; Im, Wonpil

2014-01-01

CHARMM-GUI, http://www.charmm-gui.org, is a web-based graphical user interface to prepare molecular simulation systems and input files to facilitate the usage of common and advanced simulation techniques. Since it is originally developed in 2006, CHARMM-GUI has been widely adopted for various purposes and now contains a number of different modules designed to setup a broad range of simulations including free energy calculation and large-scale coarse-grained representation. Here, we describe functionalities that have recently been integrated into CHARMM-GUI PDB Manipulator, such as ligand force field generation, incorporation of methanethiosulfonate spin labels and chemical modifiers, and substitution of amino acids with unnatural amino acids. These new features are expected to be useful in advanced biomolecular modeling and simulation of proteins. © 2014 Elsevier Inc. All rights reserved.

The geologic development of Mars - A review

NASA Technical Reports Server (NTRS)

Mutch, T. A.; Saunders, R. S.

1976-01-01

The overall view of Mars has changed from earthlike in the prespacecraft era to moonlike following the flyby missions and finally to a planet with intermediate characteristics. There are many impact craters as on the moon, but tectonic and volcanic features resembling structures on earth are also present. However, there is a lack of evidence for the compressional deformation associated with terrestrial plate tectonics and continental drift. Current analyses indicate that Mars has a differentiated interior with a crust and mantle and perhaps a core. Whenever the nature of interior processes, whether overall mantle expansion, plumes, or full-scale convection, the effects at the surface have been predominantly vertical with formation of broad regions of uplift and depression. One of the results is hemispheric asymmetry with cratered terrain in the south and younger uncratered plains in the north.

Mechanical relaxations and 1/f noise in Bi, Nb, and Fe films

NASA Astrophysics Data System (ADS)

Alers, G. B.; Weissman, M. B.

1991-10-01

Anelastic piezoresistance and 1/f noise were measured in the same samples to compare mechanical relaxations with 1/f noise. In bismuth below 200 K, both effects could be fitted to a model invoking one class of mobile defects. In niobium, both the anelastic piezoresistance and the noise scaled with the concentration of dissolved hydrogen. A well-defined peak in noise versus temperature was observed without any peak in the anelastic response. In iron, noise apparently from a carbon Snoek relaxation was observed at 220 K in a sample with high impurity concentration and at 300 K with low impurity concentration. No anelastic feature was found at 220 K in the high-impurity-concentration sample. The broad nature of 1/f noise appears to arise not from a fundamental source but from the generally poor quality of thin films.

A characteristic energy scale in glasses

NASA Astrophysics Data System (ADS)

Lerner, Edan; Bouchbinder, Eran

2018-06-01

Intrinsically generated structural disorder endows glassy materials with a broad distribution of various microscopic quantities—such as relaxation times and activation energies—without an obvious characteristic scale. At the same time, macroscopic glassy responses—such as Newtonian (linear) viscosity and nonlinear plastic deformation—are widely interpreted in terms of a characteristic energy scale, e.g., an effective temperature-dependent activation energy in Arrhenius relations. Nevertheless, despite its fundamental importance, such a characteristic energy scale has not been robustly identified. Inspired by the accumulated evidence regarding the crucial role played by disorder- and frustration-induced soft quasilocalized excitations in determining the properties and dynamics of glasses, we propose that the bulk average of the glass response to a localized force dipole defines such a characteristic energy scale. We show that this characteristic glassy energy scale features remarkable properties: (i) It increases dramatically in underlying inherent structures of equilibrium supercooled states approaching the glass transition temperature Tg, significantly surpassing the corresponding increase in the macroscopic shear modulus, dismissing the common view that structural variations in supercooled liquids upon vitrification are minute. (ii) Its variation with annealing and system size is very similar in magnitude and form to that of the energy of the softest non-phononic vibrational mode, thus establishing a nontrivial relation between a rare glassy fluctuation and a bulk average response. (iii) It exhibits striking dependence on spatial dimensionality and system size due to the long-ranged fields associated with quasilocalization, which are speculated to be related to peculiarities of the glass transition in two dimensions. In addition, we identify a truly static growing lengthscale associated with the characteristic glassy energy scale and discuss possible connections between the increase of this energy scale and the slowing down of dynamics near the glass transition temperature. Open questions and future directions are discussed.

A characteristic energy scale in glasses.

PubMed

Lerner, Edan; Bouchbinder, Eran

2018-06-07

Intrinsically generated structural disorder endows glassy materials with a broad distribution of various microscopic quantities-such as relaxation times and activation energies-without an obvious characteristic scale. At the same time, macroscopic glassy responses-such as Newtonian (linear) viscosity and nonlinear plastic deformation-are widely interpreted in terms of a characteristic energy scale, e.g., an effective temperature-dependent activation energy in Arrhenius relations. Nevertheless, despite its fundamental importance, such a characteristic energy scale has not been robustly identified. Inspired by the accumulated evidence regarding the crucial role played by disorder- and frustration-induced soft quasilocalized excitations in determining the properties and dynamics of glasses, we propose that the bulk average of the glass response to a localized force dipole defines such a characteristic energy scale. We show that this characteristic glassy energy scale features remarkable properties: (i) It increases dramatically in underlying inherent structures of equilibrium supercooled states approaching the glass transition temperature T g , significantly surpassing the corresponding increase in the macroscopic shear modulus, dismissing the common view that structural variations in supercooled liquids upon vitrification are minute. (ii) Its variation with annealing and system size is very similar in magnitude and form to that of the energy of the softest non-phononic vibrational mode, thus establishing a nontrivial relation between a rare glassy fluctuation and a bulk average response. (iii) It exhibits striking dependence on spatial dimensionality and system size due to the long-ranged fields associated with quasilocalization, which are speculated to be related to peculiarities of the glass transition in two dimensions. In addition, we identify a truly static growing lengthscale associated with the characteristic glassy energy scale and discuss possible connections between the increase of this energy scale and the slowing down of dynamics near the glass transition temperature. Open questions and future directions are discussed.

Development of a Linear Ion Trap Mass Spectrometer (LITMS) Investigation for Future Planetary Surface Missions

NASA Technical Reports Server (NTRS)

Brinckerhoff, W.; Danell, R.; Van Ameron, F.; Pinnick, V.; Li, X.; Arevalo, R.; Glavin, D.; Getty, S.; Mahaffy, P.; Chu, P.;

LINKING BROAD-SCALE LANDSCAPE APPROACHES WITH FINE-SCALE PROCESS MODELS: THE SEQL PROJECT

EPA Science Inventory

Regional landscape models have been shown to be useful in targeting watersheds in need of further attention at a local scale. However, knowing the proximate causes of environmental degradation at a regional scale, such as impervious surface, is not enough to help local decision m...

Neural classifier in the estimation process of maturity of selected varieties of apples

NASA Astrophysics Data System (ADS)

Boniecki, P.; Piekarska-Boniecka, H.; Koszela, K.; Zaborowicz, M.; Przybył, K.; Wojcieszak, D.; Zbytek, Z.; Ludwiczak, A.; Przybylak, A.; Lewicki, A.

2015-07-01

This paper seeks to present methods of neural image analysis aimed at estimating the maturity state of selected varieties of apples which are popular in Poland. An identification of the degree of maturity of selected varieties of apples has been conducted on the basis of information encoded in graphical form, presented in the digital photos. The above process involves the application of the BBCH scale, used to determine the maturity of apples. The aforementioned scale is widely used in the EU and has been developed for many species of monocotyledonous plants and dicotyledonous plants. It is also worth noticing that the given scale enables detailed determinations of development stage of a given plant. The purpose of this work is to identify maturity level of selected varieties of apples, which is supported by the use of image analysis methods and classification techniques represented by artificial neural networks. The analysis of graphical representative features based on image analysis method enabled the assessment of the maturity of apples. For the utilitarian purpose the "JabVis 1.1" neural IT system was created, in accordance with requirements of the software engineering dedicated to support the decision-making processes occurring in broadly understood production process and processing of apples.

Self-Assembled Epitaxial Au–Oxide Vertically Aligned Nanocomposites for Nanoscale Metamaterials

DOE PAGES

Li, Leigang; Sun, Liuyang; Gomez-Diaz, Juan Sebastian; ...

2016-05-17

Metamaterials made of nanoscale inclusions or artificial unit cells exhibit exotic optical properties that do not exist in natural materials. Promising applications, such as super-resolution imaging, cloaking, hyperbolic propagation, and ultrafast phase velocities have been demonstrated based on mostly micrometer-scale metamaterials and few nanoscale metamaterials. To date, most metamaterials are created using costly and tedious fabrication techniques with limited paths toward reliable large-scale fabrication. In this work, we demonstrate the one-step direct growth of self-assembled epitaxial metal–oxide nanocomposites as a drastically different approach to fabricating large-area nanostructured metamaterials. Using pulsed laser deposition, we fabricated nanocomposite films with vertically aligned goldmore » (Au) nanopillars (~20 nm in diameter) embedded in various oxide matrices with high epitaxial quality. Strong, broad absorption features in the measured absorbance spectrum are clear signatures of plasmon resonances of Au nanopillars. By tuning their densities on selected substrates, anisotropic optical properties are demonstrated via angular dependent and polarization resolved reflectivity measurements and reproduced by full-wave simulations and effective medium theory. Our model predicts exotic properties, such as zero permittivity responses and topological transitions. In conclusion, our studies suggest that these self-assembled metal–oxide nanostructures provide an exciting new material platform to control and enhance optical response at nanometer scales.« less

Survey of methods of facial palsy documentation in use by members of the Sir Charles Bell Society.

PubMed

Fattah, Adel Y; Gavilan, Javier; Hadlock, Tessa A; Marcus, Jeffrey R; Marres, Henri; Nduka, Charles; Slattery, William H; Snyder-Warwick, Alison K

2014-10-01

Facial palsy manifests a broad array of deficits affecting function, form, and psychological well-being. Assessment scales were introduced to standardize and document the features of facial palsy and to facilitate the exchange of information and comparison of outcomes. The aim of this study was to determine which assessment methodologies are currently employed by those involved in the care of patients with facial palsy as a first step toward the development of consensus on the appropriate assessments for this patient population. Online questionnaire. The Sir Charles Bell Society, a group of professionals dedicated to the care of patients with facial palsy, were surveyed to determine the scales used to document facial nerve function, patient reported outcome measures (PROM), and photographic documentation. Fifty-five percent of the membership responded (n = 83). Grading scales were used by 95%, most commonly the House-Brackmann and Sunnybrook scales. PROMs were used by 58%, typically the Facial Clinimetric Evaluation scale or Facial Disability Index. All used photographic recordings, but variability existed among the facial expressions used. Videography was performed by 82%, and mostly involved the same views as still photography; it was also used to document spontaneous movement and speech. Three-dimensional imaging was employed by 18% of respondents. There exists significant heterogeneity in assessments among clinicians, which impedes straightforward comparisons of outcomes following recovery and intervention. Widespread adoption of structured assessments, including scales, PROMs, photography, and videography, will facilitate communication and comparison among those who study the effects of interventions on this population. © 2014 The American Laryngological, Rhinological and Otological Society, Inc.

Isolating signatures of major cloud-cloud collisions using position-velocity diagrams

NASA Astrophysics Data System (ADS)

Haworth, T. J.; Tasker, E. J.; Fukui, Y.; Torii, K.; Dale, J. E.; Shima, K.; Takahira, K.; Habe, A.; Hasegawa, K.

2015-06-01

Collisions between giant molecular clouds are a potential mechanism for triggering the formation of massive stars, or even super star clusters. The trouble is identifying this process observationally and distinguishing it from other mechanisms. We produce synthetic position-velocity diagrams from models of cloud-cloud collisions, non-interacting clouds along the line of sight, clouds with internal radiative feedback and a more complex cloud evolving in a galactic disc, to try and identify unique signatures of collision. We find that a broad bridge feature connecting two intensity peaks, spatially correlated but separated in velocity, is a signature of a high-velocity cloud-cloud collision. We show that the broad bridge feature is resilient to the effects of radiative feedback, at least to around 2.5 Myr after the formation of the first massive (ionizing) star. However for a head-on 10 km s-1 collision, we find that this will only be observable from 20 to 30 per cent of viewing angles. Such broad-bridge features have been identified towards M20, a very young region of massive star formation that was concluded to be a site of cloud-cloud collision by Torii et al., and also towards star formation in the outer Milky Way by Izumi et al.

Asynchrony in the inter-annual recruitment of lake whitefish Coregonus clupeaformis in the Great Lakes region

USGS Publications Warehouse

Zischke, Mitchell T.; Bunnell, David B.; Troy, Cary D.; Berglund, Eric K.; Caroffino, David C.; Ebener, Mark P.; He, Ji X.; Sitar, Shawn P.; Hook, Tomas O.

2017-01-01

Spatially separated fish populations may display synchrony in annual recruitment if the factors that drive recruitment success, particularly abiotic factors such as temperature, are synchronised across broad spatial scales. We examined inter-annual variation in recruitment among lake whitefish (Coregonus clupeaformis) populations in lakes Huron, Michigan and Superior using fishery-dependent and -independent data from 1971 to 2014. Relative year-class strength (RYCS) was calculated from catch-curve residuals for each year class across multiple sampling years. Pairwise comparison of RYCS among datasets revealed no significant associations either within or between lakes, suggesting that recruitment of lake whitefish is spatially asynchronous. There was no consistent correlation between pairwise agreement and the distance between datasets, and models to estimate the spatial scale of recruitment synchrony did not fit well to these data. This suggests that inter-annual recruitment variation of lake whitefish is asynchronous across broad spatial scales in the Great Lakes. While our method primarily evaluated year-to-year recruitment variation, it is plausible that recruitment of lake whitefish varies at coarser temporal scales (e.g. decadal). Nonetheless, our findings differ from research on some other Coregonus species and suggest that local biotic or density-dependent factors may contribute strongly to lake whitefish recruitment rather than inter-annual variability in broad-scale abiotic factors.

Broad Scale Monitoring in the US Forest Service: Institutional Challenges and Collaborative Opportunites for Improving Planning and Decision-Making in an Era of Climate Change

NASA Astrophysics Data System (ADS)

Wurtzebach, Z.

2016-12-01

In 2012, the United States Forest Service promulgated new rules to guide Forest planning efforts in accordance with the National Forest Management Act (NFMA). One important component of the 2012 rule is a requirement for Regionally coordinated cross-boundary "broad scale" monitoring strategies that are designed to inform and facilitate Forest-level adaptive management and planning. This presentation will examine institutional challenges and opportunites for developing effective broad scale monitoring strategies identified in 90 interviews with USFS staff and partner organizations, and collaborative workshops held in Colorado, Wyoming, Arizona, and New Mexico. Internal barriers to development include funding and human resource constraints, organizational culture, problematic incentives and accountability structures, data management issues, and administrative barriers to collaboration. However, we also identify several opportunities for leveraging interagency collaboration, facilitating multi-level coordination, generating efficiencies in data collection and analysis, and improving strategies for reporting and communication to Forest level decision-makers and relevant stakeholders.

The Politics of Testing in South Africa

ERIC Educational Resources Information Center

Chisholm, Linda; Wildeman, Russell

2013-01-01

This article considers the politics of adoption of a testing regime in South Africa. While the broad features of this regime are similar to those in developed countries, there are features specific to the South African context. These emerge from a combination of external and internal pressures. External pressures derive from international testing…

Fermilab Library

Science.gov Websites

Book Newsroom Newsroom News and features Press releases Photo gallery Fact sheets and brochures Media Big Bang. Featured New eBooks The Black Book of Quantum Chromodynamics This book by Fermilab author at the LHC This book aims to give a broad organizational and strategic understanding of the nature of

Linking animals aloft with the terrestrial landscape

USGS Publications Warehouse

Buler, Jeffrey J.; Barrow, Wylie; Boone, Matthew; Dawson, Deanna K.; Diehl, Robert H.; Moore, Frank R.; Randall, Lori A.; Schreckengost, Timothy; Smolinsky, Jaclyn A.

2018-01-01

Despite using the aerosphere for many facets of their life, most flying animals (i.e., birds, bats, some insects) are still bound to terrestrial habitats for resting, feeding, and reproduction. Comprehensive broad-scale observations by weather surveillance radars of animals as they leave terrestrial habitats for migration or feeding flights can be used to map their terrestrial distributions either as point locations (e.g., communal roosts) or as continuous surface layers (e.g., animal densities in habitats across a landscape). We discuss some of the technical challenges to reducing measurement biases related to how radars sample the aerosphere and the flight behavior of animals. We highlight a recently developed methodological approach that precisely and quantitatively links the horizontal spatial structure of birds aloft to their terrestrial distributions and provides novel insights into avian ecology and conservation across broad landscapes. Specifically, we present case studies that (1) elucidate how migrating birds contend with crossing ecological barriers and extreme weather events, (2) identify important stopover areas and habitat use patterns of birds along their migration routes, and (3) assess waterfowl response to wetland habitat management and restoration. These studies aid our understanding of how anthropogenic modification of the terrestrial landscape (e.g., urbanization, habitat management), natural geographic features, and weather (e.g., hurricanes) can affect the terrestrial distributions of flying animals.

Centrality evolution of the charged-particle pseudorapidity density over a broad pseudorapidity range in Pb–Pb collisions at s NN = 2.76   TeV

DOE PAGES

Adam, J.; Adamová, D.; Aggarwal, M. M.; ...

2016-01-26

The centrality dependence of the charged-particle pseudorapidity density measured with ALICE in Pb-Pb collisions at √s NN = 2.76 TeV over a broad pseudorapidity range is presented. This Letter extends the previous results reported by ALICE to more peripheral collisions. No strong change of the overall shape of charged-particle pseudorapidity density distributions with centrality is observed, and when normalised to the number of participating nucleons in the collisions, the evolution over pseudorapidity with centrality is likewise small. Broadening the pseudorapidity range (-3.5 < η < 5) allows precise estimates of the total number of produced charged particles which we findmore » to range from 162 ± 22(syst.) to 17170 ± 770(syst.) in 80-90% and 0-5% central collisions, respectively. The total charged-particle multiplicity is seen to approximately scale with the number of participating nucleons in the collision. This suggests that hard contributions to the charged-particle multiplicity are limited. Our results are compared to models which describe dN ch/dη at mid-rapidity in the most central Pb-Pb collisions and it is found that these models do not capture all features of the distributions.« less

Balanced increases in selectivity and tolerance produce constant sparseness along the ventral visual stream

PubMed Central

Rust, Nicole C.; DiCarlo, James J.

2012-01-01

While popular accounts suggest that neurons along the ventral visual processing stream become increasingly selective for particular objects, this appears at odds with the fact that inferior temporal cortical (IT) neurons are broadly tuned. To explore this apparent contradiction, we compared processing in two ventral stream stages (V4 and IT) in the rhesus macaque monkey. We confirmed that IT neurons are indeed more selective for conjunctions of visual features than V4 neurons, and that this increase in feature conjunction selectivity is accompanied by an increase in tolerance (“invariance”) to identity-preserving transformations (e.g. shifting, scaling) of those features. We report here that V4 and IT neurons are, on average, tightly matched in their tuning breadth for natural images (“sparseness”), and that the average V4 or IT neuron will produce a robust firing rate response (over 50% of its peak observed firing rate) to ~10% of all natural images. We also observed that sparseness was positively correlated with conjunction selectivity and negatively correlated with tolerance within both V4 and IT, consistent with selectivity-building and invariance-building computations that offset one another to produce sparseness. Our results imply that the conjunction-selectivity-building and invariance-building computations necessary to support object recognition are implemented in a balanced fashion to maintain sparseness at each stage of processing. PMID:22836252

Ultra high vacuum broad band high power microwave window

DOEpatents

Nguyen-Tuong, V.; Dylla, H.F. III

1997-11-04

An improved high vacuum microwave window has been developed that utilizes high density polyethylene coated on two sides with SiOx, SiNx, or a combination of the two. The resultant low dielectric and low loss tangent window creates a low outgassing, low permeation seal through which broad band, high power microwave energy may be passed. No matching device is necessary and the sealing technique is simple. The features of the window are broad band transmission, ultra-high vacuum compatibility with a simple sealing technique, low voltage standing wave ratio, high power transmission and low cost. 5 figs.

Ultra high vacuum broad band high power microwave window

DOEpatents

Nguyen-Tuong, Viet; Dylla, III, Henry Frederick

1997-01-01

An improved high vacuum microwave window has been developed that utilizes high density polyethylene coated on two sides with SiOx, SiNx, or a combination of the two. The resultant low dielectric and low loss tangent window creates a low outgassing, low permeation seal through which broad band, high power microwave energy may be passed. No matching device is necessary and the sealing technique is simple. The features of the window are broad band transmission, ultra-high vacuum compatibility with a simple sealing technique, low voltage standing wave ratio, high power transmission and low cost.

Temperament and behavior in toddlers of mothers with bipolar disorder: a preliminary investigation of a population at high familial risk for psychopathology.

PubMed

Simeonova, Diana I; Attalla, Ashraf M; Nguyen, Theresa; Stagnaro, Emily; Knight, Bettina T; Craighead, W Edward; Stowe, Zachary N; Newport, D Jeffrey

2014-12-01

There are no published studies examining concurrent associations between temperament and behavior during toddlerhood in offspring of parents with bipolar disorder (OBD), a population at high familial risk for psychopathology. Better understanding of early determinants contributing to well-being or mental illness in this high-risk population has the potential to aid in the identification of problem domains to be targeted clinically, and facilitate the development of early intervention and prevention initiatives for an appropriate subgroup of children at the youngest possible age. A total of 30 offspring of mothers with BD (mean age=25.4±4.9 months) participated in this study at Emory University. The mothers completed the Early Childhood Behavior Questionnaire (ECBQ) and the Child Behavior Checklist (CBCL). The results of the correlational analyses indicated that the broad temperament dimension Negative Affectivity and the individual ECBQ scales Sadness and Shyness were positively associated with the broad CBCL dimension Internalizing Problems, whereas Sociability was negatively associated with Internalizing Problems. In addition, the temperament scales Soothability and Frustration were negatively and positively associated with Internalizing Problems, respectively. All ECBQ scales included in the broad temperament dimension Effortful Control, except for Cuddliness, were significantly negatively associated with the broad CBCL dimension Externalizing Problems. A significant sex difference was found for the ECBQ scale Positive Anticipation and the CBCL scale Sleep Problems, with a higher mean rank score for girls than for boys. This is the first systematic investigation of temperament and behavior and concurrent associations between these two domains in toddlers of mothers with BD. The present findings provide a platform for future investigations of the contribution of temperament and early behavior to potential well-being or mental illness in OBD.

Scale-dependent variation in forest structures in naturally dynamic boreal forest landscapes

NASA Astrophysics Data System (ADS)

Kulha, Niko; Pasanen, Leena; De Grandpré, Louis; Kuuluvainen, Timo; Aakala, Tuomas

2017-04-01

Natural forest structures vary at multiple spatial scales. This variation reflects the occurrence of driving factors, such as disturbances and variation in soil or topography. To explore and understand the linkages of forest structural characteristics and factors driving their variation, we need to recognize how the structural characteristics vary in relation to spatial scale. This can be achieved by identifying scale-dependent features in forest structure within unmanaged forest landscapes. By identifying these features and examining their relationship with potential driving factors, we can better understand the dynamics of forest structural development. Here, we examine the spatial variation in forest structures at multiple spatial scales, utilizing data from old-growth boreal forests in two regions with contrasting disturbance regimes: northern Finland and north-eastern Québec, Canada ( 67° 45'N, 29° 36'E, 49° 39'N, 67° 55'W, respectively). The three landscapes (4 km2 each) in Finland are dominated by Pinus sylvestris and Picea abies, whereas the two landscapes in Québec are dominated by Abies balsamea and Picea mariana. Québec's forests are a subject to cyclic outbreaks of the eastern spruce budworm, causing extensive mortality especially in A. balsamea-dominated stands. In the Finnish landscapes, gap- to patch-scale disturbances due to tree senescence, fungi and wind, as well as infrequent surface fires in areas dominated by P. sylvestris, prevail. Owing to the differences in the species compositions and the disturbance regimes, we expect differing scales of variation between the landscapes. To quantify patterns of variation, we visually interpret stereopairs of recent aerial photographs. From the photographs, we collect information on forest canopy coverage, species composition and dead wood. For the interpretation, each 4 km2 plot is divided into 0.1ha square cells (4096 per plot). Interpretations are validated against field observations and compiled to raster maps. We analyze the raster maps with Bayesian scale space approach (iBSiZer), which aims in capturing credible variations at different spatial scales. As a result, we can detect structural entities (e.g. patches with higher canopy cover), which deviate credibly from their surroundings. The detected entities can further be linked to specific drivers. Our results show that the role of a particular driving factor varies in relation to spatial scale. For example, in the Finnish landscapes, topoedaphic factors exerted a stronger control on broad-scale forest structural characteristics, whereas recent disturbances (quantified as the amount of dead wood) appeared to play an important role in explaining the smaller scale variation of forest structures. Here, we showcase the methodology used in the detection of scale-dependent forest structural entities and present the results of our analysis of the spatial scales of variation in the natural boreal forest structures.

DEVELOPMENT OF RIPARIAN ZONE INDICATORS (INT. GRANT)

EPA Science Inventory

Landscape features (e.g., land use) influence water quality characteristics on a variety of spatial scales. For example, while land use is controlled by anthropogenic features at a local scale, geologic features are set at larger spatial, and longer temporal scales. Individual ...

Linking imaging spectroscopy and trait data to better understand spatial and temporal variability in functional traits

NASA Astrophysics Data System (ADS)

Townsend, Philip; Kruger, Eric; Wang, Zhihui; Singh, Aditya

2017-04-01

Imaging spectroscopy exhibits great potential for mapping foliar functional traits that are impractical or expensive to regularly measure on the ground, and are essentially impossible to characterize comprehensively across space. Specifically, the high information content in spectroscopic data enables us to identify narrow spectral feature that are associated with vegetation primary and secondary biochemistry (nutrients, pigments, defensive compounds), leaf structure (e.g., leaf mass per area), canopy structure, and physiological capacity. Ultimately, knowledge of the variability in such traits is critical to understanding vegetation productivity, as well as responses to climatic variability, disturbances, pests and pathogens. The great challenge to the use of imaging spectroscopy to supplement trait databases is the development of trait retrieval approaches that are broadly applicable within and between ecosystem types. Here, we outline how we are using the US National Ecological Observatory Network (NEON) to prototype the scaling and comparison of trait distributions derived from field measurements and imagery. We find that algorithms to map traits from imagery are robust across ecosystem types, when controlling for physiognomy and vegetation percent cover, and that among all vegetation types, the chemometric algorithms utilize similar features for mapping of traits.

MoleculeNet: a benchmark for molecular machine learning† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc02664a

PubMed Central

Wu, Zhenqin; Ramsundar, Bharath; Feinberg, Evan N.; Gomes, Joseph; Geniesse, Caleb; Pappu, Aneesh S.; Leswing, Karl

2017-01-01

Molecular machine learning has been maturing rapidly over the last few years. Improved methods and the presence of larger datasets have enabled machine learning algorithms to make increasingly accurate predictions about molecular properties. However, algorithmic progress has been limited due to the lack of a standard benchmark to compare the efficacy of proposed methods; most new algorithms are benchmarked on different datasets making it challenging to gauge the quality of proposed methods. This work introduces MoleculeNet, a large scale benchmark for molecular machine learning. MoleculeNet curates multiple public datasets, establishes metrics for evaluation, and offers high quality open-source implementations of multiple previously proposed molecular featurization and learning algorithms (released as part of the DeepChem open source library). MoleculeNet benchmarks demonstrate that learnable representations are powerful tools for molecular machine learning and broadly offer the best performance. However, this result comes with caveats. Learnable representations still struggle to deal with complex tasks under data scarcity and highly imbalanced classification. For quantum mechanical and biophysical datasets, the use of physics-aware featurizations can be more important than choice of particular learning algorithm. PMID:29629118

Earth Observations taken by the Expedition 13 crew

NASA Image and Video Library

2006-05-28

ISS013-E-27870 (28 May 2006) --- Considerable sunglint emphasizes features on Lake Erie in this image photographed by an Expedition 13 crewmember on the International Space Station. This detailed, south-looking image shows features on the surface of Lake Erie, about 30 miles west of Cleveland, Ohio. This view shows tight-V-shaped wakes of small craft. It also shows broad patterns of larger craft, probably large freighters carrying cargo that displace and disturb more water during passage. These larger wakes are aligned with the direct course between Detroit (out of frame) and Cleveland (out of frame). Some of the broad, ill-defined swaths of light and dark are streaks of wind-roughened water, which reflect the Sun differently.

K-shell photoabsorption coefficients of O2, CO2, CO, and N2O

NASA Technical Reports Server (NTRS)

Barrus, D. M.; Blake, R. L.; Burek, A. J.; Chambers, K. C.; Pregenzer, A. L.

1979-01-01

The total photoabsorption coefficient has been measured from 500 to 600 eV around the K edge of oxygen in gases O2, CO2, CO, and N2O by means of a gold continuum source and crystal spectrometer with better than 1-eV resolution. The cross sections are dominated by discrete molecular-orbital transitions below the K-edge energy. A few Rydberg transitions were barely detectable. Broad shape resonances appear at or above the K edge. Additional broad, weak features above the K edge possibly arise from shake up. Quantitative results are given that have about 10% accuracy except on the very strong peaks. All the measured features are discussed in relation to other related measurements and theory.

An Instability in Narrow Planetary Rings

NASA Astrophysics Data System (ADS)

Weiss, J. W.; Stewart, G. R.

2003-08-01

We will present our work investigating the behavior of narrow planetary rings with low dispersion velocities. Such narrow a ring will be initially unstable to self-gravitational collapse. After the collapse, the ring is collisionally very dense. At this stage, it is subject to a new instability. Waves appear on the inner and outer edges of the ring within half of an orbital period. The ring then breaks apart radially, taking approximately a quarter of an orbital period of do so. As clumps of ring particles expand radially away from the dense ring, Kepler shear causes these clumps to stretch out azimuthally, and eventually collapse into a new set of dense rings. Small-scale repetitions of the original instability in these new rings eventually leads to a stabilized broad ring with higher dispersion velocities than the initial ring. Preliminary results indicate that this instability may be operating on small scales in broad rings in the wake-like features seen by Salo and others. Some intriguing properties have been observed during this instability. The most significant is a coherence in the epicyclic phases of the particles. Both self-gravity and collisions in the ring operated to create and enforce this coherence. The coherence might also be responsible for the instability to radial expansion. We also observe that guiding centers of the particles do not migrate to the center of the ring during the collapse phase of the ring. In fact, guiding centers move radially away from the core of the ring during this phase, consistent with global conservation of angular momentum. We will show the results of our simulations to date, including movies of the evolution of various parameters. (Audiences members wanting popcorn are advised to bring their own.) This work is supported by a NASA Graduate Student Research Program grant and by the Cassini mission.

Toward the Restoration of Caribou Habitat: Understanding Factors Associated with Human Motorized Use of Legacy Seismic Lines

NASA Astrophysics Data System (ADS)

Pigeon, Karine E.; Anderson, Meghan; MacNearney, Doug; Cranston, Jerome; Stenhouse, Gordon; Finnegan, Laura

2016-11-01

Populations of boreal and southern mountain caribou in Alberta, Canada, are declining, and the ultimate cause of their decline is believed to be anthropogenic disturbance. Linear features are pervasive across the landscape, and of particular importance, seismic lines established in the 1900s (legacy seismic lines) are slow to regenerate. Off-highway vehicles are widely used on these seismic lines and can hamper vegetative re-growth because of ongoing physical damage, compaction, and active clearing. Restoration of seismic lines within caribou range is therefore a priority for the recovery of threatened populations in Alberta, but a triage-type approach is necessary to prioritize restoration and ensure conservation resources are wisely spent. To target restoration efforts, our objective was to determine factors that best explained levels of off-highway vehicles use on seismic lines intersecting roads. We investigated the relative importance of local topography, vegetation attributes of seismic lines, and broad-scale human factors such as the density of infrastructures and the proximity to recreation campsites and towns to explain the observed levels of off-highway vehicles use. We found that off-highway vehicles use was mainly associated with local topography and vegetation attributes of seismic lines that facilitated ease-of-travel. Broad-scale landscape attributes associated with industrial, recreation access, or hunting activities did not explain levels of off-highway vehicles use. Management actions aimed at promoting natural regeneration and reduce ease-of-travel on legacy seismic lines within caribou ranges can be beneficial to caribou recovery in Alberta, Canada, and we therefore recommend restrictions of off-highway vehicles use on low vegetation, dry seismic lines in caribou ranges.

An Item Response Analysis of the Motor and Behavioral Subscales of the Unified Huntington's Disease Rating Scale in Huntington Disease Gene Expansion Carriers

PubMed Central

Vaccarino, Anthony L.; Anderson, Karen; Borowsky, Beth; Duff, Kevin; Giuliano, Joseph; Guttman, Mark; Ho, Aileen K.; Orth, Michael; Paulsen, Jane S.; Sills, Terrence; van Kammen, Daniel P.; Evans, Kenneth R.

2011-01-01

Although the Unified Huntington's Disease Rating Scale (UHDRS) is widely used in the assessment of Huntington disease (HD), the ability of individual items to discriminate individual differences in motor or behavioral manifestations has not been extensively studied in HD gene expansion carriers without a motor-defined clinical diagnosis (i.e., prodromal-HD or prHD). To elucidate the relationship between scores on individual motor and behavioral UHDRS items and total score for each subscale, a non-parametric item response analysis was performed on retrospective data from two multicentre, longitudinal studies. Motor and Behavioral assessments were supplied for 737 prHD individuals with data from 2114 visits (PREDICT-HD) and 686 HD individuals with data from 1482 visits (REGISTRY). Option characteristic curves were generated for UHDRS subscale items in relation to their subscale score. In prHD, overall severity of motor signs was low and participants had scores of 2 or above on very few items. In HD, motor items that assessed ocular pursuit, saccade initiation, finger tapping, tandem walking, and to a lesser extent saccade velocity, dysarthia, tongue protrusion, pronation/supination, Luria, bradykinesia, choreas, gait and balance on the retropulsion test were found to discriminate individual differences across a broad range of motor severity. In prHD, depressed mood, anxiety, and irritable behavior demonstrated good discriminative properties. In HD, depressed mood demonstrated a good relationship with the overall behavioral score. These data suggest that at least some UHDRS items appear to have utility across a broad range of severity, although many items demonstrate problematic features. PMID:21370269

Toward the realization of a compact chemical sensor platform using quantum cascade lasers

NASA Astrophysics Data System (ADS)

Holthoff, Ellen L.; Marcus, Logan S.; Pellegrino, Paul M.

2015-05-01

The Army is investigating several spectroscopic techniques (e.g., infrared spectroscopy) that could allow for an adaptable sensor platform. Traditionally, chemical sensing platforms have been hampered by the opposing concerns of increasing sensor capability while maintaining a minimal package size. Current sensors, although reasonably sized, are geared to more classical chemical threats, and the ability to expand their capabilities to a broader range of emerging threats is uncertain. Recently, photoacoustic spectroscopy, employed in a sensor format, has shown enormous potential to address these ever-changing threats, while maintaining a compact sensor design. In order to realize the advantage of photoacoustic sensor miniaturization, light sources of comparable size are required. Recent research has employed quantum cascade lasers (QCLs) in combination with MEMS-scale photoacoustic cell designs. The continuous tuning capability of QCLs over a broad wavelength range in the mid-infrared spectral region greatly expands the number of compounds that can be identified. Results have demonstrated that utilizing a tunable QCL with a MEMS-scale photoacoustic cell produces favorable detection limits (ppb levels) for chemical targets (e.g., dimethyl methyl phosphonate (DMMP), vinyl acetate, 1,4-dioxane). Although our chemical sensing research has benefitted from the broad tuning capabilities of QCLs, the limitations of these sources must be considered. Current commercially available tunable systems are still expensive and obviously geared more toward laboratory operation, not fielding. Although the laser element itself is quite small, the packaging, power supply, and controller remain logistical burdens. Additionally, operational features such as continuous wave (CW) modulation and laser output powers while maintaining wide tunability are not yet ideal for a variety of sensing applications. In this paper, we will discuss our continuing evaluation of QCL technology as it matures in relation to our ultimate goal of a universal compact chemical sensor platform.

An item response analysis of the motor and behavioral subscales of the unified Huntington's disease rating scale in huntington disease gene expansion carriers.

PubMed

Vaccarino, Anthony L; Anderson, Karen; Borowsky, Beth; Duff, Kevin; Giuliano, Joseph; Guttman, Mark; Ho, Aileen K; Orth, Michael; Paulsen, Jane S; Sills, Terrence; van Kammen, Daniel P; Evans, Kenneth R

2011-04-01

Although the Unified Huntington's Disease Rating Scale (UHDRS) is widely used in the assessment of Huntington disease (HD), the ability of individual items to discriminate individual differences in motor or behavioral manifestations has not been extensively studied in HD gene expansion carriers without a motor-defined clinical diagnosis (ie, prodromal-HD or prHD). To elucidate the relationship between scores on individual motor and behavioral UHDRS items and total score for each subscale, a nonparametric item response analysis was performed on retrospective data from 2 multicenter longitudinal studies. Motor and behavioral assessments were supplied for 737 prHD individuals with data from 2114 visits (PREDICT-HD) and 686 HD individuals with data from 1482 visits (REGISTRY). Option characteristic curves were generated for UHDRS subscale items in relation to their subscale score. In prHD, overall severity of motor signs was low, and participants had scores of 2 or above on very few items. In HD, motor items that assessed ocular pursuit, saccade initiation, finger tapping, tandem walking, and to a lesser extent, saccade velocity, dysarthria, tongue protrusion, pronation/supination, Luria, bradykinesia, choreas, gait, and balance on the retropulsion test were found to discriminate individual differences across a broad range of motor severity. In prHD, depressed mood, anxiety, and irritable behavior demonstrated good discriminative properties. In HD, depressed mood demonstrated a good relationship with the overall behavioral score. These data suggest that at least some UHDRS items appear to have utility across a broad range of severity, although many items demonstrate problematic features. Copyright © 2011 Movement Disorder Society.

Integrating remotely acquired and field data to assess effects of setback levees on riparian and aquatic habitat in glacial-melt water rivers

USGS Publications Warehouse

Konrad, C.P.; Black, R.W.; Voss, F.; Neale, C. M. U.

2008-01-01

Setback levees, in which levees are reconstructed at a greater distance from a river channel, are a promising restoration technique particularly for alluvial rivers with broad floodplains where river-floodplain connectivity is essential to ecological processes. Documenting the ecological outcomes of restoration activities is essential for assessing the comparative benefits of different restoration approaches and for justifying new restoration projects. Remote sensing of aquatic habitats offers one approach for comprehensive, objective documentation of river and floodplain habitats, but is difficult in glacial rivers because of high suspended-sediment concentrations, braiding and a lack of large, well-differentiated channel forms such as riffles and pools. Remote imagery and field surveys were used to assess the effects of recent and planned setback levees along the Puyallup River and, more generally, the application of multispectral imagery for classifying aquatic and riparian habitats in glacial-melt water rivers. Airborne images were acquired with a horizontal ground resolution of 0.5 m in three spectral bands (0.545-0.555, 0.665-0.675 and 0.790-0.810 ??m) spanning from green to near infrared (NIR) wavelengths. Field surveys identified river and floodplain habitat features and provided the basis for a comparative hydraulic analysis. Broad categories of aquatic habitat (smooth and rough water surface), exposed sediment (sand and boulder) and vegetated surfaces (herbaceous and deciduous shrub/forest) were classified accurately using the airborne images. Other categories [e.g. conifers, boulder, large woody debtis (LWD)] and subdivisions of broad categories (e.g. riffles and runs) were not successfully classified either because these features did not form large patches that could be identified on the imagery or their spectral reflectances were not distinct from those of other habitat types. Airborne imagery was critical for assessing fine-scale aquatic habitat heterogeneity including shallow, low-velocity regions that were not feasible or practical to map in the field in many cases due to their widespread distribution, small size and poorly defined boundaries with other habitat types. At the reach-scale, the setback levee affected the amount and distribution of riparian and aquatic habitats: (1) the area of all habitats was greater where levees had been set back and with relatively more vegetated floodplain habitat and relatively less exposed sediment and aquatic habitat, (2) where levees confine the river, less low-velocity aquatic habitat is present over a range of flows with a higher degree of bed instability during high flows. As river restoration proceeds in the Pacific Northwest and elsewhere, remotely acquired imagery will be important for documenting its effects on the amount and distribution of aquatic and floodplain habitats, complimenting field data as a quantitative basis for evaluating project efficacy.

Integrated Study of the Dynamics of the Kuroshio Intrusion and Effects on Acoustic Propagation

DTIC Science & Technology

2018-08-03

runs that could then be evaluated against synoptic surveys collected using a ship-based towed, undulating profiler. ocean circulation; ocean...Revelle. Gliders were launched from R/V Melville in May. Data from the broad-scale hydrographic survey undertaken by OR2 and OR3 in Taiwan Strait...1.0 −0.5 0.0 0.5 1.0 Salinity psu figure 1. plan views of the temperature and salinity fields from two broad-scale surveys from r/Vs Ocean Researcher 2

n-SIFT: n-dimensional scale invariant feature transform.

PubMed

Cheung, Warren; Hamarneh, Ghassan

2009-09-01

We propose the n-dimensional scale invariant feature transform (n-SIFT) method for extracting and matching salient features from scalar images of arbitrary dimensionality, and compare this method's performance to other related features. The proposed features extend the concepts used for 2-D scalar images in the computer vision SIFT technique for extracting and matching distinctive scale invariant features. We apply the features to images of arbitrary dimensionality through the use of hyperspherical coordinates for gradients and multidimensional histograms to create the feature vectors. We analyze the performance of a fully automated multimodal medical image matching technique based on these features, and successfully apply the technique to determine accurate feature point correspondence between pairs of 3-D MRI images and dynamic 3D + time CT data.

IUE detector saturation and the new 2800 A absorption feature 'discovered' by Karim, Hoyle, and Wickramasinghe

NASA Astrophysics Data System (ADS)

Savage, B. D.; Sitko, M. L.

1984-03-01

The 2800 A feature of Karim et al. (1983) is shown to be the result of IUE detector saturation effects in overexposed spectra. A properly exposed spectrum and an overexposed one are shown. The latter shows a broad absorption peak at 2800 A while the former does not.

Time dependent emission line profiles in the radially streaming particle model of Seyfert galaxy nuclei and quasi-stellar objects

NASA Technical Reports Server (NTRS)

Hubbard, R.

1974-01-01

The radially-streaming particle model for broad quasar and Seyfert galaxy emission features is modified to include sources of time dependence. The results are suggestive of reported observations of multiple components, variability, and transient features in the wings of Seyfert and quasi-stellar emission lines.

Intra-reach headwater fish assemblage structure

USGS Publications Warehouse

McKenna, James E.

2017-01-01

Large-scale conservation efforts can take advantage of modern large databases and regional modeling and assessment methods. However, these broad-scale efforts often assume uniform average habitat conditions and/or species assemblages within stream reaches.

Identifying forest patterns from space to explore dynamics across the circumpolar boreal

NASA Astrophysics Data System (ADS)

Montesano, P. M.; Neigh, C. S. R.; Feng, M.; Channan, S.; Sexton, J. O.; Wagner, W.; Wooten, M.; Poulter, B.; Wang, L.

2017-12-01

A variety of forest patterns are the result of interactions between broad-scale climate and local-scale site factors and history across the northernmost portion of the circumpolar boreal. Patterns of forest extent, height, and cover help describe forest structure transitions that influence future and reflect past dynamics. Coarse spaceborne observations lack structural detail at forest transitions, which inhibits understanding of these dynamics. We highlight: (1) the use of sub-meter spaceborne stereogrammetry for deriving structure estimates in boreal forests; (2) its potential to complement other spaceborne estimates of forest structure at critical scales; and (3) the potential of these sub-meter and other Landsat-derived structure estimates for improving understanding of broad-scale boreal dynamics such as carbon flux and albedo, capturing the spatial variability of the boreal-tundra biome boundary, and assessing its potential for change.

Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure-function results for the Schellman loop.

PubMed

Newell, Nicholas E

2011-12-15

The extraction of the set of features most relevant to function from classified biological sequence sets is still a challenging problem. A central issue is the determination of expected counts for higher order features so that artifact features may be screened. Cascade detection (CD), a new algorithm for the extraction of localized features from sequence sets, is introduced. CD is a natural extension of the proportional modeling techniques used in contingency table analysis into the domain of feature detection. The algorithm is successfully tested on synthetic data and then applied to feature detection problems from two different domains to demonstrate its broad utility. An analysis of HIV-1 protease specificity reveals patterns of strong first-order features that group hydrophobic residues by side chain geometry and exhibit substantial symmetry about the cleavage site. Higher order results suggest that favorable cooperativity is weak by comparison and broadly distributed, but indicate possible synergies between negative charge and hydrophobicity in the substrate. Structure-function results for the Schellman loop, a helix-capping motif in proteins, contain strong first-order features and also show statistically significant cooperativities that provide new insights into the design of the motif. These include a new 'hydrophobic staple' and multiple amphipathic and electrostatic pair features. CD should prove useful not only for sequence analysis, but also for the detection of multifactor synergies in cross-classified data from clinical studies or other sources. Windows XP/7 application and data files available at: https://sites.google.com/site/cascadedetect/home. nacnewell@comcast.net Supplementary information is available at Bioinformatics online.

RELATION OF ENVIRONMENTAL CHARACTERISTICS TO FISH ASSEMBLAGES IN THE UPPER FRENCH BROAD RIVER BASIN, NORTH CAROLINA

EPA Science Inventory

Fish assemblages at 16 sites in the upper French Broad River basin, North Carolina were related to environmental variables using detrended correspondence analysis (DCA) and linear regression. This study was conducted at the landscape scale because regional variables are controlle...

Lead Pipe Scale Analysis Using Broad-Beam Argon Ion Milling to Elucidate Drinking Water Corrosion

EPA Science Inventory

Herein, we compared the characterization of lead pipe scale removed from a drinking water distribution system using two different cross section methods (conventional polishing and argon ion beam etching). The pipe scale solids were analyzed using scanning electron microscopy (SEM...

Rotation invariant fast features for large-scale recognition

NASA Astrophysics Data System (ADS)

Takacs, Gabriel; Chandrasekhar, Vijay; Tsai, Sam; Chen, David; Grzeszczuk, Radek; Girod, Bernd

2012-10-01

We present an end-to-end feature description pipeline which uses a novel interest point detector and Rotation- Invariant Fast Feature (RIFF) descriptors. The proposed RIFF algorithm is 15× faster than SURF1 while producing large-scale retrieval results that are comparable to SIFT.2 Such high-speed features benefit a range of applications from Mobile Augmented Reality (MAR) to web-scale image retrieval and analysis.

Fusion of infrared polarization and intensity images based on improved toggle operator

NASA Astrophysics Data System (ADS)

Zhu, Pan; Ding, Lei; Ma, Xiaoqing; Huang, Zhanhua

2018-01-01

Integration of infrared polarization and intensity images has been a new topic in infrared image understanding and interpretation. The abundant infrared details and target from infrared image and the salient edge and shape information from polarization image should be preserved or even enhanced in the fused result. In this paper, a new fusion method is proposed for infrared polarization and intensity images based on the improved multi-scale toggle operator with spatial scale, which can effectively extract the feature information of source images and heavily reduce redundancy among different scale. Firstly, the multi-scale image features of infrared polarization and intensity images are respectively extracted at different scale levels by the improved multi-scale toggle operator. Secondly, the redundancy of the features among different scales is reduced by using spatial scale. Thirdly, the final image features are combined by simply adding all scales of feature images together, and a base image is calculated by performing mean value weighted method on smoothed source images. Finally, the fusion image is obtained by importing the combined image features into the base image with a suitable strategy. Both objective assessment and subjective vision of the experimental results indicate that the proposed method obtains better performance in preserving the details and edge information as well as improving the image contrast.

Sex differences and within-family associations in the broad autism phenotype

PubMed Central

Klusek, Jessica; Losh, Molly; Martin, Gary E

2013-01-01

While there is a strong sex bias in the presentation of autism, it is unknown whether this bias is also present in subclinical manifestations of autism among relatives, or the broad autism phenotype (BAP). This study examined this question, and investigated patterns of co-occurrence of BAP traits within families of individuals with autism. Pragmatic language and personality features of the BAP were studied in 42 fathers and 50 mothers of individuals with autism using direct assessment tools used in prior family studies of the BAP. Higher rates of aloof personality style were detected among fathers, while no sex differences were detected for other BAP traits. Within individuals, pragmatic language features were associated with the social personality styles of the BAP in mothers but not fathers. A number of BAP features were correlated within spousal pairs. Finally, associations were detected between paternal BAP characteristics and the severity of children’s autism symptoms in all three domains (social, communication, and repetitive behaviors). Mother-child correlations were detected for aspects of communication only. Together, findings suggest that most features of the BAP express comparably in males and females, and raise some specific questions about how such features might inform studies of the genetic basis of autism. PMID:23188882

Lattice Boltzmann modeling of transport phenomena in fuel cells and flow batteries

NASA Astrophysics Data System (ADS)

Xu, Ao; Shyy, Wei; Zhao, Tianshou

2017-06-01

Fuel cells and flow batteries are promising technologies to address climate change and air pollution problems. An understanding of the complex multiscale and multiphysics transport phenomena occurring in these electrochemical systems requires powerful numerical tools. Over the past decades, the lattice Boltzmann (LB) method has attracted broad interest in the computational fluid dynamics and the numerical heat transfer communities, primarily due to its kinetic nature making it appropriate for modeling complex multiphase transport phenomena. More importantly, the LB method fits well with parallel computing due to its locality feature, which is required for large-scale engineering applications. In this article, we review the LB method for gas-liquid two-phase flows, coupled fluid flow and mass transport in porous media, and particulate flows. Examples of applications are provided in fuel cells and flow batteries. Further developments of the LB method are also outlined.

Atla Regio, Venus: Geology and origin of a major equatorial volcanic rise

NASA Technical Reports Server (NTRS)

Senske, D. A.; Head, James W., III

1992-01-01

Regional volcanic rises form a major part of the highlands in the equatorial region of Venus. These broad domical uplands, 1000 to 3000 km across, contain centers of volcanism forming large edifices and are associated with extension and rifting. Two classes of rises are observed: (1) those that are dominated by tectonism, acting as major centers for converging rifts such as Beta Regio and Alta Regio, and are termed tectonic junctions; and (2) those forming uplands characterized primarily by large-scale volcanism forming edifices. Western Eistla Regio and Bell Regio, where zones of extension and rifting are less developed. Within this second class of features the edifices are typically found at the end of a single rift, or are associated with a linear belt of deformation. We examine the geologic characteristics of the tectonic junction at Alta Regio, concentrating on documenting the styles of volcanism and assessing mechanisms for the formation of regional topography.

Magnetic Origin of Black Hole Winds Across the Mass Scale

NASA Technical Reports Server (NTRS)

Fukumura, Keigo; Kazanas, Demosthenes; Shrader, Chris; Behar, Ehud; Tombesi, Francesco; Contopoulos, Ioannis

2017-01-01

Black hole accretion disks appear to produce invariably plasma outflows that result in blue-shifted absorption features in their spectra. The X-ray absorption-line properties of these outflows are quite diverse, ranging in velocity from non-relativistic (approx. 300 km/sec) to sub-relativistic (approx. 0.1c where c is the speed of light) and a similarly broad range in the ionization states of the wind plasma. We report here that semi-analytic, self-similar magnetohydrodynamic (MHD) wind models that have successfully accounted for the X-ray absorber properties of supermassive black holes, also fit well the high-resolution X-ray spectrum of the accreting stellar-mass black hole, GRO J1655-40. This provides an explicit theoretical argument of their MHD origin (aligned with earlier observational claims) and supports the notion of a universal magnetic structure of the observed winds across all known black hole sizes.

Social-cognitive functioning and schizotypal characteristics.

PubMed

Meyer, Joseph; Shean, Glenn

2006-05-01

The authors examined the relationship between social cognition and a feature of schizotypal personality referred to as magical ideation, defined broadly as the presence and intensity of illogical beliefs about causality and the nature of reality. The measures of social cognition used in this study were the Character Intention Task (CIT) and the adult version of the Reading the Mind in the Eyes Test. Regression analyses indicated that understanding of character intentions, as measured by CIT scores, and ability to identify emotions on the Eyes test were related to non-realistic beliefs. Principal components analysis of the Magical Ideation Scale generated 3 factors: Occult Beliefs, Non-Realism, and New Age Ideas. Results indicated that impaired understanding of character intentions and ability to identify emotions on the Eyes test were related to non-realistic beliefs. Understanding the cognitive impairments associated with schizotypal characteristics can facilitate development of more targeted therapeutic interventions.

The Versatile Elastohydrodynamics of a Free Particle near a Thin Soft Wall

NASA Astrophysics Data System (ADS)

Salez, Thomas; Saintyves, Baudouin; Mahadevan, L.

2015-03-01

We address the free motion of a buoyant particle inside a viscous fluid, in the vicinity of a thin compressible elastic wall. After discussing the main scalings, we obtain analytically the dominant drag forces within the soft lubrication approximation. By including those into the equations of motion of the particle, we establish a general governing system of three coupled nonlinear and singular differential equations, that describe the three essential motions: sedimentation, hydroplaning, and hydrospinning, through four dimensionless control parameters. Numerical integration allows us to predict a wide zoology of exotic solutions - despite the low-Reynolds feature of the flow - including: spontaneous oscillation, Magnus-like effect, enhanced sedimentation, and boomerang-like effect. We compare these predictions to experiments. The presented elementary approach could be of interest in the description of a broad variety of elastohydrodynamical phenomena, including: landslides, ageing of cartilaginous joints, and motion of a cell in a microfluidic channel or in a blood vessel.

Persistent neuronal activity in human prefrontal cortex links perception and action

PubMed Central

Haller, Matar; Case, John; Crone, Nathan E.; Chang, Edward F.; King-Stephens, David; Laxer, Kenneth D.; Weber, Peter B.; Parvizi, Josef; Knight, Robert T.; Shestyuk, Avgusta Y.

2017-01-01

How do humans flexibly respond to changing environmental demands on a sub-second temporal scale? Extensive research has highlighted the key role of the prefrontal cortex in flexible decision-making and adaptive behavior, yet the core mechanisms that translate sensory information into behavior remain undefined. Utilizing direct human cortical recordings, we investigated the temporal and spatial evolution of neuronal activity, indexed by the broadband gamma signal, while sixteen participants performed a broad range of self-paced cognitive tasks. Here we describe a robust domain- and modality-independent pattern of persistent stimulus-to-response neural activation that encodes stimulus features and predicts motor output on a trial-by-trial basis with near-perfect accuracy. Observed across a distributed network of brain areas, this persistent neural activation is centered in the prefrontal cortex and is required for successful response implementation, providing a functional substrate for domain-general transformation of perception into action, critical for flexible behavior.

Terahertz-infrared electrodynamics of single-wall carbon nanotube films

NASA Astrophysics Data System (ADS)

Zhukova, E. S.; Grebenko, A. K.; Bubis, A. V.; Prokhorov, A. S.; Belyanchikov, M. A.; Tsapenko, A. P.; Gilshteyn, E. P.; Kopylova, D. S.; Gladush, Yu G.; Anisimov, A. S.; Anzin, V. B.; Nasibulin, A. G.; Gorshunov, B. P.

2017-11-01

Broad-band (4-20 000 cm-1) spectra of real and imaginary conductance of a set of high-quality pristine and AuCl3-doped single-walled carbon nanotube (SWCNT) films with different transparency are systematically measured. It is shown that while the high-energy (≥1 eV) response is determined by well-known interband transitions, the lower-energy electrodynamic properties of the films are fully dominated by unbound charge carriers. Their main spectral effect is seen as the free-carrier Drude-type contribution. Partial localization of these carriers leads to a weak plasmon resonance around 100 cm-1. At the lowest frequencies, below 10 cm-1, a gap-like feature is detected whose origin is associated with the energy barrier experienced by the carriers at the intersections between SWCNTs. It is assumed that these three mechanisms are universal and determine the low-frequency terahertz-infrared electrodynamics of SWCNT wafer-scale films.

Beyond Linear Sequence Comparisons: The use of genome-levelcharacters for phylogenetic reconstruction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boore, Jeffrey L.

2004-11-27

Although the phylogenetic relationships of many organisms have been convincingly resolved by the comparisons of nucleotide or amino acid sequences, others have remained equivocal despite great effort. Now that large-scale genome sequencing projects are sampling many lineages, it is becoming feasible to compare large data sets of genome-level features and to develop this as a tool for phylogenetic reconstruction that has advantages over conventional sequence comparisons. Although it is unlikely that these will address a large number of evolutionary branch points across the broad tree of life due to the infeasibility of such sampling, they have great potential for convincinglymore » resolving many critical, contested relationships for which no other data seems promising. However, it is important that we recognize potential pitfalls, establish reasonable standards for acceptance, and employ rigorous methodology to guard against a return to earlier days of scenario-driven evolutionary reconstructions.« less

Geological mapping of Sputnik Planitia on Pluto

NASA Astrophysics Data System (ADS)

White, Oliver L.; Moore, Jeffrey M.; McKinnon, William B.; Spencer, John R.; Howard, Alan D.; Schenk, Paul M.; Beyer, Ross A.; Nimmo, Francis; Singer, Kelsi N.; Umurhan, Orkan M.; Stern, S. Alan; Ennico, Kimberly; Olkin, Cathy B.; Weaver, Harold A.; Young, Leslie A.; Cheng, Andrew F.; Bertrand, Tanguy; Binzel, Richard P.; Earle, Alissa M.; Grundy, Will M.; Lauer, Tod R.; Protopapa, Silvia; Robbins, Stuart J.; Schmitt, Bernard; New Horizons Science Team

2017-05-01

The geology and stratigraphy of the feature on Pluto informally named Sputnik Planitia is documented through geologic mapping at 1:2,000,000 scale. All units that have been mapped are presently being affected to some degree by the action of flowing N2 ice. The N2 ice plains of Sputnik Planitia display no impact craters, and are undergoing constant resurfacing via convection, glacial flow and sublimation. Condensation of atmospheric N2 onto the surface to form a bright mantle has occurred across broad swathes of Sputnik Planitia, and appears to be partly controlled by Pluto's obliquity cycles. The action of N2 ice has been instrumental in affecting uplands terrain surrounding Sputnik Planitia, and has played a key role in the disruption of Sputnik Planitia's western margin to form chains of blocky mountain ranges, as well in the extensive erosion by glacial flow of the uplands to the east of Sputnik Planitia.

Current understanding of the effects of enviromental and irradiation variables on RPV embrittlement

DOE Office of Scientific and Technical Information (OSTI.GOV)

Odette, G.R.; Lucas, G.E.; Wirth, B.

1997-02-01

Radiation enhanced diffusion at RPV operating temperatures around 290{degrees}C leads to the formation of various ultrafine scale hardening phases, including copper-rich and copper-catalyzed manganese-nickel rich precipitates. In addition, defect cluster or cluster-solute complexes, manifesting a range of thermal stability, develop under irradiation. These features contribute directly to hardening which in turn is related to embrittlement, manifested as shifts in Charpy V-notch transition temperature. Models based on the thermodynamics, kinetics and micromechanics of the embrittlement processes have been developed; these are broadly consistent with experiment and rationalize the highly synergistic effects of most important irradiation (temperature, flux, fluence) and metallurgical (copper,more » nickel, manganese, phosphorous and heat treatment) variables on both irradiation hardening and recovery during post-irradiation annealing. A number of open questions remain which can be addressed with a hierarchy of new theoretical and experimental tools.« less

From puddles to planet: modeling approaches to vector-borne diseases at varying resolution and scale.

PubMed

Eckhoff, Philip A; Bever, Caitlin A; Gerardin, Jaline; Wenger, Edward A; Smith, David L

2015-08-01

Since the original Ross-Macdonald formulations of vector-borne disease transmission, there has been a broad proliferation of mathematical models of vector-borne disease, but many of these models retain most to all of the simplifying assumptions of the original formulations. Recently, there has been a new expansion of mathematical frameworks that contain explicit representations of the vector life cycle including aquatic stages, multiple vector species, host heterogeneity in biting rate, realistic vector feeding behavior, and spatial heterogeneity. In particular, there are now multiple frameworks for spatially explicit dynamics with movements of vector, host, or both. These frameworks are flexible and powerful, but require additional data to take advantage of these features. For a given question posed, utilizing a range of models with varying complexity and assumptions can provide a deeper understanding of the answers derived from models. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

A computational prediction of structure and function of novel homologue of Arabidopsis thaliana Vps51/Vps67 subunit in Corchorus olitorius.

PubMed

Zaman, Aubhishek; Fancy, Nurun Nahar

2012-12-01

Vps mediated vesicular transport is important for transferring macromolecules trapped inside a vesicle. Although highly abundant, Vps shows tremendous sequence variation among diverse array of species. However, this difference in sequence, which seems to also translate into substantial functional variation, is hardly characterized in Corchorus spp. Here, our computational study investigates structural and functional features of one of the Vps subunit namely Vps51/Vps67 in C. olitorius. Broad scale structural characterization revealed novel information about the overall Vps structure and binding sites. Moreover, functional analyses indicate interaction partners which were unexplored to date. Since membrane trafficking is essentially associated with nutrient uptake and chemical de-toxification, characterization of the Vps subunit can well provide us with better insight into important agronomic traits such as stress response, immune response and phytoremediation capacity.

Application of PALSAR-2 remote sensing data for structural geology and topographic mapping in Kelantan river basin, Malaysia

NASA Astrophysics Data System (ADS)

Beiranvand Pour, Amin; Hashim, Mazlan

2016-06-01

Natural hazards of geological origin are one of major problem during heavy monsoons rainfall in Kelantan state, peninsular Malaysia. Several landslides occur in this region are obviously connected to geological and topographical features, every year. Satellite synthetic aperture radar (SAR) data are particularly applicable for detection of geological structural and topographical features in tropical conditions. In this study, Phased Array type L-band Synthetic Aperture Radar (PALSAR-2), remote sensing data were used to identify high potential risk and susceptible zones for landslide in the Kelantan river basin. Adaptive Local Sigma filter was selected and applied to accomplish speckle reduction and preserving both edges and features in PALSAR-2 fine mode observation images. Different polarization images were integrated to enhance geological structures. Additionally, directional filters were applied to the PALSAR-2 Local Sigma resultant image for edge enhancement and detailed identification of linear features. Several faults, drainage patterns and lithological contact layers were identified at regional scale. In order to assess the results, fieldwork and GPS survey were conducted in the landslide affected zones in the Kelantan river basin. Results demonstrate the most of the landslides were associated with N-S, NNW-SSE and NE-SW trending faults, angulate drainage pattern and metamorphic and Quaternary units. Consequently, geologic structural map were produced for Kelantan river basin using recent PALSAR-2 data, which could be broadly applicable for landslide hazard assessment and delineation of high potential risk and susceptible areas. Landslide mitigation programmes could be conducted in the landslide recurrence regions for reducing catastrophes leading to economic losses and death.

Effective spatial scales for evaluating environmental determinants of population density in Yakushima macaques.

PubMed

Agetsuma, Naoki; Koda, Ryosuke; Tsujino, Riyou; Agetsuma-Yanagihara, Yoshimi

2015-02-01

Population densities of wildlife species tend to be correlated with resource productivity of habitats. However, wildlife density has been greatly modified by increasing human influences. For effective conservation, we must first identify the significant factors that affect wildlife density, and then determine the extent of the areas in which the factors should be managed. Here, we propose a protocol that accomplishes these two tasks. The main threats to wildlife are thought to be habitat alteration and hunting, with increases in alien carnivores being a concern that has arisen recently. Here, we examined the effect of these anthropogenic disturbances, as well as natural factors, on the local density of Yakushima macaques (Macaca fuscata yakui). We surveyed macaque densities at 30 sites across their habitat using data from 403 automatic cameras. We quantified the effect of natural vegetation (broad-leaved forest, mixed coniferous/broad-leaved forest, etc.), altered vegetation (forestry area and agricultural land), hunting pressure, and density of feral domestic dogs (Canis familiaris). The effect of each vegetation type was analyzed at numerous spatial scales (between 150 and 3,600-m radii from the camera locations) to determine the best scale for explaining macaque density (effective spatial scale). A model-selection procedure (generalized linear mixed model) was used to detect significant factors affecting macaque density. We detected that the most effective spatial scale was 400 m in radius, a scale that corresponded to group range size of the macaques. At this scale, the amount of broad-leaved forest was selected as a positive factor, whereas mixed forest and forestry area were selected as negative factors for macaque density. This study demonstrated the importance of the simultaneous evaluation of all possible factors of wildlife population density at the appropriate spatial scale. © 2014 Wiley Periodicals, Inc.

The underlying processes of a soil mite metacommunity on a small scale.

PubMed

Dong, Chengxu; Gao, Meixiang; Guo, Chuanwei; Lin, Lin; Wu, Donghui; Zhang, Limin

2017-01-01

Metacommunity theory provides an understanding of how ecological processes regulate local community assemblies. However, few field studies have evaluated the underlying mechanisms of a metacommunity on a small scale through revealing the relative roles of spatial and environmental filtering in structuring local community composition. Based on a spatially explicit sampling design in 2012 and 2013, this study aims to evaluate the underlying processes of a soil mite metacommunity on a small spatial scale (50 m) in a temperate deciduous forest located at the Maoershan Ecosystem Research Station, Northeast China. Moran's eigenvector maps (MEMs) were used to model independent spatial variables. The relative importance of spatial (including trend variables, i.e., geographical coordinates, and broad- and fine-scale spatial variables) and environmental factors in driving the soil mite metacommunity was determined by variation partitioning. Mantel and partial Mantel tests and a redundancy analysis (RDA) were also used to identify the relative contributions of spatial and environmental variables. The results of variation partitioning suggested that the relatively large and significant variance was a result of spatial variables (including broad- and fine-scale spatial variables and trend), indicating the importance of dispersal limitation and autocorrelation processes. The significant contribution of environmental variables was detected in 2012 based on a partial Mantel test, and soil moisture and soil organic matter were especially important for the soil mite metacommunity composition in both years. The study suggested that the soil mite metacommunity was primarily regulated by dispersal limitation due to broad-scale and neutral biotic processes at a fine-scale and that environmental filtering might be of subordinate importance. In conclusion, a combination of metacommunity perspectives between neutral and species sorting theories was suggested to be important in the observed structure of the soil mite metacommunity at the studied small scale.

The underlying processes of a soil mite metacommunity on a small scale

PubMed Central

Guo, Chuanwei; Lin, Lin; Wu, Donghui; Zhang, Limin

2017-01-01

Metacommunity theory provides an understanding of how ecological processes regulate local community assemblies. However, few field studies have evaluated the underlying mechanisms of a metacommunity on a small scale through revealing the relative roles of spatial and environmental filtering in structuring local community composition. Based on a spatially explicit sampling design in 2012 and 2013, this study aims to evaluate the underlying processes of a soil mite metacommunity on a small spatial scale (50 m) in a temperate deciduous forest located at the Maoershan Ecosystem Research Station, Northeast China. Moran’s eigenvector maps (MEMs) were used to model independent spatial variables. The relative importance of spatial (including trend variables, i.e., geographical coordinates, and broad- and fine-scale spatial variables) and environmental factors in driving the soil mite metacommunity was determined by variation partitioning. Mantel and partial Mantel tests and a redundancy analysis (RDA) were also used to identify the relative contributions of spatial and environmental variables. The results of variation partitioning suggested that the relatively large and significant variance was a result of spatial variables (including broad- and fine-scale spatial variables and trend), indicating the importance of dispersal limitation and autocorrelation processes. The significant contribution of environmental variables was detected in 2012 based on a partial Mantel test, and soil moisture and soil organic matter were especially important for the soil mite metacommunity composition in both years. The study suggested that the soil mite metacommunity was primarily regulated by dispersal limitation due to broad-scale and neutral biotic processes at a fine-scale and that environmental filtering might be of subordinate importance. In conclusion, a combination of metacommunity perspectives between neutral and species sorting theories was suggested to be important in the observed structure of the soil mite metacommunity at the studied small scale. PMID:28481906

The hot DOA1 degenerate HZ 21 - A search for circumstellar/photospheric metals and peculiar absorption at He II

NASA Technical Reports Server (NTRS)

Fritz, M. L.; Leckenby, H.; Sion, E. M.; Vauclair, G.; Liebert, J.

1990-01-01

A high-resolution IUE spectrum of the hot DO1 degenerate HZ 21 was obtained by combining US1 + European 2 low-background observing shifts. The SWP image reveals a rich spectrum of interstellar absorption lines with an average velocity in the line of sight to HZ 21 of -30 km/s. However, there is no clear evidence of any highly or lowly ionized metal features which could be attributed to circumstellar, wind, or photospheric absorption. There is, however, a broad absorption trough at He II (1640) which was not unexpected, given the clear presence of He II (4686) absorption in this star's optical spectrum. The velocity width of He II (1640) appears consistent with photospheric absorption wings which appear to flank the geocoronal Ly-alpha emission feature. The He II (1640) feature reveals what appears to be a broad (310 km/s) emission reversal. Evidence is provided that the emission reversal is probably real.

Multi-scale spatial controls of understory vegetation in Douglas-fir–western hemlock forests of western Oregon, USA

Treesearch

Julia I. Burton; Lisa M. Ganio; Klaus J. Puettmann

2014-01-01

Forest understory vegetation is influenced by broad-scale variation in climate, intermediate scale variation in topography, disturbance and neighborhood interactions. However, little is known about how these multi-scale controls interact to influence observed spatial patterns. We examined relationships between the aggregated cover of understory plant species (%...

Networks and landscapes: a framework for setting goals and evaluating performance at the large landscape scale

Treesearch

R Patrick Bixler; Shawn Johnson; Kirk Emerson; Tina Nabatchi; Melly Reuling; Charles Curtin; Michele Romolini; Morgan Grove

2016-01-01

The objective of large landscape conser vation is to mitigate complex ecological problems through interventions at multiple and overlapping scales. Implementation requires coordination among a diverse network of individuals and organizations to integrate local-scale conservation activities with broad-scale goals. This requires an understanding of the governance options...

Multi-scale interactions between local hydrography, seabed topography, and community assembly on cold-water coral reefs

NASA Astrophysics Data System (ADS)

Henry, L.-A.; Moreno Navas, J.; Roberts, J. M.

2013-04-01

We investigated how interactions between hydrography, topography and species ecology influence the assembly of species and functional traits across multiple spatial scales of a cold-water coral reef seascape. In a novel approach for these ecosystems, we used a spatially resolved complex three-dimensional flow model of hydrography to help explain assembly patterns. Forward-selection of distance-based Moran's eigenvector mapping (dbMEM) variables identified two submodels of spatial scales at which communities change: broad-scale (across reef) and fine-scale (within reef). Variance partitioning identified bathymetric and hydrographic gradients important in creating broad-scale assembly of species and traits. In contrast, fine-scale assembly was related more to processes that created spatially autocorrelated patches of fauna, such as philopatric recruitment in sessile fauna, and social interactions and food supply in scavenging detritivores and mobile predators. Our study shows how habitat modification of reef connectivity and hydrography by bottom fishing and renewable energy installations could alter the structure and function of an entire cold-water coral reef seascape.

Ecoregions and stream morphology in eastern Oklahoma

USGS Publications Warehouse

Splinter, D.K.; Dauwalter, D.C.; Marston, R.A.; Fisher, W.L.

2010-01-01

Broad-scale variables (i.e., geology, topography, climate, land use, vegetation, and soils) influence channel morphology. How and to what extent the longitudinal pattern of channel morphology is influenced by broad-scale variables is important to fluvial geomorphologists and stream ecologists. In the last couple of decades, there has been an increase in the amount of interdisciplinary research between fluvial geomorphologists and stream ecologists. In a historical context, fluvial geomorphologists are more apt to use physiographic regions to distinguish broad-scale variables, while stream ecologists are more apt to use the concept of an ecosystem to address the broad-scale variables that influence stream habitat. For this reason, we designed a study using ecoregions, which uses physical and biological variables to understand how landscapes influence channel processes. Ecoregions are delineated by similarities in geology, climate, soils, land use, and potential natural vegetation. In the fluvial system, stream form and function are dictated by processes observed throughout the fluvial hierarchy. Recognizing that stream form and function should differ by ecoregion, a study was designed to evaluate how the characteristics of stream channels differed longitudinally among three ecoregions in eastern Oklahoma, USA: Boston Mountains, Ozark Highlands, and Ouachita Mountains. Channel morphology of 149 stream reaches was surveyed in 1st- through 4th-order streams, and effects of drainage area and ecoregion on channel morphology was evaluated using multiple regressions. Differences existed (?????0.05) among ecoregions for particle size, bankfull width, and width/depth ratio. No differences existed among ecoregions for gradient or sinuosity. Particle size was smallest in the Ozark Highlands and largest in the Ouachita Mountains. Bankfull width was larger in the Ozark Highlands than in the Boston Mountains and Ouachita Mountains in larger streams. Width/depth ratios of the Boston Mountains and Ozark Highlands were not statistically different. Significant differences existed, however, between the Boston Mountains and Ozark Highlands when compared individually to the Ouachita Mountains. We found that ecoregions afforded a good spatial structure that can help in understanding longitudinal trends in stream reach morphology surveyed at the reach scale. The hierarchy of the fluvial system begins within a broad, relatively homogenous setting that imparts control on processes that affect stream function. Ecoregions provide an adequate regional division to begin a large-scale geomorphic study of processes in stream channels. ?? 2010 Elsevier B.V.

On the scaling of small-scale jet noise to large scale

NASA Technical Reports Server (NTRS)

Soderman, Paul T.; Allen, Christopher S.

1992-01-01

An examination was made of several published jet noise studies for the purpose of evaluating scale effects important to the simulation of jet aeroacoustics. Several studies confirmed that small conical jets, one as small as 59 mm diameter, could be used to correctly simulate the overall or perceived noise level (PNL) noise of large jets dominated by mixing noise. However, the detailed acoustic spectra of large jets are more difficult to simulate because of the lack of broad-band turbulence spectra in small jets. One study indicated that a jet Reynolds number of 5 x 10(exp 6) based on exhaust diameter enabled the generation of broad-band noise representative of large jet mixing noise. Jet suppressor aeroacoustics is even more difficult to simulate at small scale because of the small mixer nozzles with flows sensitive to Reynolds number. Likewise, one study showed incorrect ejector mixing and entrainment using a small-scale, short ejector that led to poor acoustic scaling. Conversely, fairly good results were found with a longer ejector and, in a different study, with a 32-chute suppressor nozzle. Finally, it was found that small-scale aeroacoustic resonance produced by jets impacting ground boards does not reproduce at large scale.

On the scaling of small-scale jet noise to large scale

NASA Technical Reports Server (NTRS)

Soderman, Paul T.; Allen, Christopher S.

1992-01-01

An examination was made of several published jet noise studies for the purpose of evaluating scale effects important to the simulation of jet aeroacoustics. Several studies confirmed that small conical jets, one as small as 59 mm diameter, could be used to correctly simulate the overall or PNL noise of large jets dominated by mixing noise. However, the detailed acoustic spectra of large jets are more difficult to simulate because of the lack of broad-band turbulence spectra in small jets. One study indicated that a jet Reynolds number of 5 x 10 exp 6 based on exhaust diameter enabled the generation of broad-band noise representative of large jet mixing noise. Jet suppressor aeroacoustics is even more difficult to simulate at small scale because of the small mixer nozzles with flows sensitive to Reynolds number. Likewise, one study showed incorrect ejector mixing and entrainment using small-scale, short ejector that led to poor acoustic scaling. Conversely, fairly good results were found with a longer ejector and, in a different study, with a 32-chute suppressor nozzle. Finally, it was found that small-scale aeroacoustic resonance produced by jets impacting ground boards does not reproduce at large scale.

Where and why hyporheic exchange is important: Inferences from a parsimonious, physically-based river network model

NASA Astrophysics Data System (ADS)

Gomez-Velez, J. D.; Harvey, J. W.

2014-12-01

Hyporheic exchange has been hypothesized to have basin-scale consequences; however, predictions throughout river networks are limited by available geomorphic and hydrogeologic data as well as models that can analyze and aggregate hyporheic exchange flows across large spatial scales. We developed a parsimonious but physically-based model of hyporheic flow for application in large river basins: Networks with EXchange and Subsurface Storage (NEXSS). At the core of NEXSS is a characterization of the channel geometry, geomorphic features, and related hydraulic drivers based on scaling equations from the literature and readily accessible information such as river discharge, bankfull width, median grain size, sinuosity, channel slope, and regional groundwater gradients. Multi-scale hyporheic flow is computed based on combining simple but powerful analytical and numerical expressions that have been previously published. We applied NEXSS across a broad range of geomorphic diversity in river reaches and synthetic river networks. NEXSS demonstrates that vertical exchange beneath submerged bedforms dominates hyporheic fluxes and turnover rates along the river corridor. Moreover, the hyporheic zone's potential for biogeochemical transformations is comparable across stream orders, but the abundance of lower-order channels results in a considerably higher cumulative effect for low-order streams. Thus, vertical exchange beneath submerged bedforms has more potential for biogeochemical transformations than lateral exchange beneath banks, although lateral exchange through meanders may be important in large rivers. These results have implications for predicting outcomes of river and basin management practices.

DUST AROUND R CORONAE BOREALIS STARS. II. INFRARED EMISSION FEATURES IN AN H-POOR ENVIRONMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia-Hernandez, D. A.; Rao, N. Kameswara; Lambert, D. L., E-mail: agarcia@iac.es, E-mail: nkrao@iiap.res.in, E-mail: dll@astro.as.utexas.edu

2013-08-20

Residual Spitzer/Infrared Spectrograph spectra for a sample of 31 R Coronae Borealis (RCB) stars are presented and discussed in terms of narrow emission features superimposed on the quasi-blackbody continuous infrared emission. A broad {approx}6-10 {mu}m dust emission complex is seen in the RCBs showing an extreme H-deficiency. A secondary and much weaker {approx}11.5-15 {mu}m broad emission feature is detected in a few RCBs with the strongest {approx}6-10 {mu}m dust complex. The Spitzer infrared spectra reveal for the first time the structure within the {approx}6-10 {mu}m dust complex, showing the presence of strong C-C stretching modes at {approx}6.3 and 8.1 {mu}mmore » as well as of other dust features at {approx}5.9, 6.9, and 7.3 {mu}m, which are attributable to amorphous carbonaceous solids with little or no hydrogen. The few RCBs with only moderate H-deficiencies display the classical ''unidentified infrared bands (UIRs)'' and mid-infrared features from fullerene-related molecules. In general, the characteristics of the RCB infrared emission features are not correlated with the stellar and circumstellar properties, suggesting that the RCB dust features may not be dependent on the present physical conditions around RCB stars. The only exception seems to be the central wavelength of the 6.3 {mu}m feature, which is blueshifted in those RCBs showing also the UIRs, i.e., the RCBs with the smallest H deficiency.« less

Ultraviolet Broad Absorption Features and the Spectral Energy Distribution of the QSO PG 1351+64. 3.1

NASA Technical Reports Server (NTRS)

Zheng, W.; Kriss, G. A.; Wang, J. X.; Brotherton, M.; Oegerle, W. R.; Blair, W. P.; Davidsen, A. F.; Green, R. F.; Hutchings, J. B.; Kaiser, M. E.;

Ultraviolet Broad Absorption Features and the Spectral Energy Distribution of the QSO PG 1351+641. 2.5

NASA Technical Reports Server (NTRS)

Zheng, W.; Kriss, G. A.; Wang, J. X.; Brotherton, M.; Oegerle, W. R.; Blair, W. P.; Davidsen, A. F.; Green, R. F.; Hutchings, J. B.; Kaiser, M. E.;

Multiscale guidance and tools for implementing a landscape approach to resource management in the Bureau of Land Management

USGS Publications Warehouse

Carter, Sarah K.; Carr, Natasha B.; Miller, Kevin H.; Wood, David J.A.

2017-01-19

The Bureau of Land Management (BLM) is implementing a landscape approach to resource management (hereafter, landscape approach) to more effectively work with partners and understand the effects of management decisions. A landscape approach is a set of concepts and principles used to guide resource management when multiple stakeholders are involved and goals include diverse and sustainable social, environmental, and economic outcomes. Core principles of a landscape approach include seeking meaningful participation of diverse stakeholders, considering diverse resource values in multifunctional landscapes, acknowledging the tradeoffs needed to meet diverse objectives in the context of sustainable resource management, and addressing the complexity of social and ecological processes by embracing interdisciplinarity and considering multiple and broad spatial and temporal perspectives.In chapter 1, we outline the overall goal of this report: to provide a conceptual foundation and framework for implementing a landscape approach to resource management in the BLM, focusing on the role of multiscale natural resource monitoring and assessment information. In chapter 2, we describe a landscape approach to resource management. BLM actions taken to implement a landscape approach include a major effort to compile broad-scale data on natural resource status and condition across much of the west. These broadscale data now provide a regional context for interpreting monitoring data collected at individual sites and informing decisions made for local projects. We also illustrate the utility of using multiscale data to understand potential effects of different resource management decisions, define relevant terms in landscape ecology, and identify spatial scales at which planning and management decisions may be evaluated.In chapter 3, we describe how the BLM Rapid Ecoregional Assessment program and Assessment, Inventory and Monitoring program may be integrated to provide the multiscale monitoring data needed to inform a landscape approach. We propose six core, broad-scale indicators of natural resource status and condition: the amount, spatial distribution, patch size and connectivity of ecosystems and wildlife habitats, and the pattern of existing development across the landscape. Additional supplemental broad-scale indicators may include fire return intervals, distributions of invasive species, and vulnerability of ecosystems to a changing climate. Landscape intactness is an additional derived indicator that is calculated from one or more of the core and supplemental broad-scale indicators. We then outline a process for assessing broad-scale indicators that is consistent with the overall BLM Assessment, Inventory, and Monitoring process, facilitating development of a multiscale natural resource monitoring program. Finally, we describe how broad-scale indicators of natural resource status and condition may guide field monitoring implemented through the BLM Assessment, Inventory and Monitoring program and help address complex management questions.In chapter 4, we consider the specific question of assessing the ecological integrity of rangelands across the western United States. We first define ecological integrity and its relation to land health. We then suggest that a combination of six local-scale indicators collected through field sampling at individual sites and five complementary broad-scale indicators together provide information on the composition, structure, and function of rangelands. The terrestrial monitoring indicators collected at the level of individual field sites are the amount of bare ground, vegetation composition (including invasive plants and plants of management concern), vegetation height, and the proportion of the soil surface in large intercanopy gaps. The broad-scale indicators are vegetation amount, distribution, patch size, connectivity, and productivity, along with the pattern of terrestrial development. Our suggested approach to quantifying ecological integrity focuses specifically on informing management of public lands for multiple resource uses, and illustrates how existing data collected through BLM monitoring and assessment programs may be used together to provide multiscale information on land condition across broad extents.In chapter 5, we develop a method for quantifying landscape intactness and apply this method to the western United States. Our multiscale index of landscape intactness is designed to be defensible, decomposable, and easy to understand. The foundation of the multiscale index of landscape intactness is the surface disturbance footprint of anthropogenic development, including energy and urban development, roads and railroads, cultivated croplands, surface mines and quarries, and energy transmission lines and pipelines. The index represents a gradient of anthropogenic influence as represented by development summarized at two spatial scales of analysis: 2.5 and 20 kilometers. We provide several example applications of the index, illustrating how these data may inform natural resource decisions at the spatial extent of BLM field and district offices, states, ecoregions, and the western United States. We find that 19.2 percent of lands managed by the BLM across the 17 western states of the conterminous United States had the highest landscape intactness. The largest intact areas occur on public lands at high elevations or in the Great Basin.We believe the frameworks, processes, and analyses provided in this report will improve the ability of the BLM to identify and evaluate potential direct and indirect effects of management actions (such as habitat restoration and renewable energy development), and assist the BLM in further implementing a landscape approach to resource management.

A subcontinental view of forest plant invasions

Treesearch

Christopher M. Oswalt; Songlin Fei; Qinfeng Guo; Basil V. Iannone III; Sonja N. Oswalt; Bryan C. Pijanowski; Kevin M. Potter

2015-01-01

Over the last few decades, considerable attention has focused on small-scale studies of invasive plants and invaded systems. Unfortunately, small scale studies rarely provide comprehensive insight into the complexities of biological invasions at macroscales. Systematic and repeated monitoring of biological invasions at broad scales are rare. In this report, we...

REGIONAL-SCALE FISH ECOLOGY IN NORTHEASTERN USA LAKES USING A PROBABILITY-BASED SURVEY DESIGN

EPA Science Inventory

Historically, most fish ecology has been done at local scales. As these data accumulate, the need to set this knowledge into landscape, regional, and historical context grows. There are important broad-scale issues (e.g., non-point source pollution, biodiversity loss, alien spe...

A spectroscopic search for colliding stellar winds in O-type close binary systems. III - 29 UW Canis Majoris

NASA Technical Reports Server (NTRS)

Wiggs, Michael S.; Gies, Douglas R.

1993-01-01

The orbital-phase variations in the optical emission lines and UV P Cygni lines of the massive O-type binary 29 UW Canis Majoris are investigated in a search for evidence of colliding winds. High SNR spectra of the H-alpha and He I 6678-A emission lines are presented, and radial velocity curves for several features associated with the photosphere of the more luminous primary star are given. The H-alpha features consists of a P Cygni component that shares the motion of the primary, and which probably originates at the base of its wind, and a broad, stationary emission component. It is proposed that the broad emission forms in a plane midway between the stars where the winds collide. A simple geometric model is used to show that this placement of the broad component can explain the lack of orbital velocity shifts, the near-constancy of the emission strength throughout the orbit, the large velocities associated with the H-alpha wings, and the constancy of the velocity range observed.

Uniform competency-based local feature extraction for remote sensing images

NASA Astrophysics Data System (ADS)

Sedaghat, Amin; Mohammadi, Nazila

2018-01-01

Local feature detectors are widely used in many photogrammetry and remote sensing applications. The quantity and distribution of the local features play a critical role in the quality of the image matching process, particularly for multi-sensor high resolution remote sensing image registration. However, conventional local feature detectors cannot extract desirable matched features either in terms of the number of correct matches or the spatial and scale distribution in multi-sensor remote sensing images. To address this problem, this paper proposes a novel method for uniform and robust local feature extraction for remote sensing images, which is based on a novel competency criterion and scale and location distribution constraints. The proposed method, called uniform competency (UC) local feature extraction, can be easily applied to any local feature detector for various kinds of applications. The proposed competency criterion is based on a weighted ranking process using three quality measures, including robustness, spatial saliency and scale parameters, which is performed in a multi-layer gridding schema. For evaluation, five state-of-the-art local feature detector approaches, namely, scale-invariant feature transform (SIFT), speeded up robust features (SURF), scale-invariant feature operator (SFOP), maximally stable extremal region (MSER) and hessian-affine, are used. The proposed UC-based feature extraction algorithms were successfully applied to match various synthetic and real satellite image pairs, and the results demonstrate its capability to increase matching performance and to improve the spatial distribution. The code to carry out the UC feature extraction is available from href="https://www.researchgate.net/publication/317956777_UC-Feature_Extraction.

A phylogenetic analysis of armored scale insects (Hemiptera: Diaspididae), based upon nuclear, mitochondrial, and endosymbiont gene sequences.

PubMed

Andersen, Jeremy C; Wu, Jin; Gruwell, Matthew E; Gwiazdowski, Rodger; Santana, Sharlene E; Feliciano, Natalie M; Morse, Geoffrey E; Normark, Benjamin B

2010-12-01

Armored scale insects (Hemiptera: Diaspididae) are among the most invasive insects in the world. They have unusual genetic systems, including diverse types of paternal genome elimination (PGE) and parthenogenesis. Intimate relationships with their host plants and bacterial endosymbionts make them potentially important subjects for the study of co-evolution. Here, we expand upon recent phylogenetic work (Morse and Normark, 2006) by analyzing armored scale and endosymbiont DNA sequences from 125 species of armored scale insect, represented by 253 samples and eight outgroup species. We used fragments of four different gene regions: the nuclear protein-coding gene Elongation Factor 1α (EF1α), the large ribosomal subunit (28S) rDNA, a mitochondrial region spanning parts of cytochrome oxidase I (COI) and cytochrome oxidase II (COII), and the small ribosomal subunit (16S) rDNA from the primary bacterial endosymbiont Uzinura diaspidicola. Maximum likelihood, and Bayesian analyses were performed producing highly congruent topological results. A comparison of two datasets, one with and one without missing data, found that missing data had little effect on topology. Our results broadly corroborate several major features of the existing classification, although we do not find any of the subfamilies, tribes or subtribes to be monophyletic as currently constituted. Using ancestral state reconstruction we estimate that the ancestral armored scale had the late PGE sex system, and it may as well have been pupillarial, though results differed between reconstruction methods. These results highlight the need for a complete revision of this family, and provide the groundwork for future taxonomic work in armored scale insects. Copyright © 2010 Elsevier Inc. All rights reserved.

Modelling Stream-Fish Functional Traits in Reference Conditions: Regional and Local Environmental Correlates

PubMed Central

Oliveira, João M.; Segurado, Pedro; Santos, José M.; Teixeira, Amílcar; Ferreira, Maria T.; Cortes, Rui V.

2012-01-01

Identifying the environmental gradients that control the functional structure of biological assemblages in reference conditions is fundamental to help river management and predict the consequences of anthropogenic stressors. Fish metrics (density of ecological guilds, and species richness) from 117 least disturbed stream reaches in several western Iberia river basins were modelled with generalized linear models in order to investigate the importance of regional- and local-scale abiotic gradients to variation in functional structure of fish assemblages. Functional patterns were primarily associated with regional features, such as catchment elevation and slope, rainfall, and drainage area. Spatial variations of fish guilds were thus associated with broad geographic gradients, showing (1) pronounced latitudinal patterns, affected mainly by climatic factors and topography, or (2) at the basin level, strong upstream-downstream patterns related to stream position in the longitudinal gradient. Maximum native species richness was observed in midsize streams in accordance with the river continuum concept. The findings of our study emphasized the need to use a multi-scale approach in order to fully assess the factors that govern the functional organization of biotic assemblages in ‘natural’ streams, as well as to improve biomonitoring and restoration of fluvial ecosystems. PMID:23029242

A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network

PubMed Central

Gardner, Toby A.; Ferreira, Joice; Barlow, Jos; Lees, Alexander C.; Parry, Luke; Vieira, Ima Célia Guimarães; Berenguer, Erika; Abramovay, Ricardo; Aleixo, Alexandre; Andretti, Christian; Aragão, Luiz E. O. C.; Araújo, Ivanei; de Ávila, Williams Souza; Bardgett, Richard D.; Batistella, Mateus; Begotti, Rodrigo Anzolin; Beldini, Troy; de Blas, Driss Ezzine; Braga, Rodrigo Fagundes; Braga, Danielle de Lima; de Brito, Janaína Gomes; de Camargo, Plínio Barbosa; Campos dos Santos, Fabiane; de Oliveira, Vívian Campos; Cordeiro, Amanda Cardoso Nunes; Cardoso, Thiago Moreira; de Carvalho, Déborah Reis; Castelani, Sergio André; Chaul, Júlio Cézar Mário; Cerri, Carlos Eduardo; Costa, Francisco de Assis; da Costa, Carla Daniele Furtado; Coudel, Emilie; Coutinho, Alexandre Camargo; Cunha, Dênis; D'Antona, Álvaro; Dezincourt, Joelma; Dias-Silva, Karina; Durigan, Mariana; Esquerdo, Júlio César Dalla Mora; Feres, José; Ferraz, Silvio Frosini de Barros; Ferreira, Amanda Estefânia de Melo; Fiorini, Ana Carolina; da Silva, Lenise Vargas Flores; Frazão, Fábio Soares; Garrett, Rachel; Gomes, Alessandra dos Santos; Gonçalves, Karoline da Silva; Guerrero, José Benito; Hamada, Neusa; Hughes, Robert M.; Igliori, Danilo Carmago; Jesus, Ederson da Conceição; Juen, Leandro; Junior, Miércio; Junior, José Max Barbosa de Oliveira; Junior, Raimundo Cosme de Oliveira; Junior, Carlos Souza; Kaufmann, Phil; Korasaki, Vanesca; Leal, Cecília Gontijo; Leitão, Rafael; Lima, Natália; Almeida, Maria de Fátima Lopes; Lourival, Reinaldo; Louzada, Júlio; Nally, Ralph Mac; Marchand, Sébastien; Maués, Márcia Motta; Moreira, Fátima M. S.; Morsello, Carla; Moura, Nárgila; Nessimian, Jorge; Nunes, Sâmia; Oliveira, Victor Hugo Fonseca; Pardini, Renata; Pereira, Heloisa Correia; Pompeu, Paulo Santos; Ribas, Carla Rodrigues; Rossetti, Felipe; Schmidt, Fernando Augusto; da Silva, Rodrigo; da Silva, Regina Célia Viana Martins; da Silva, Thiago Fonseca Morello Ramalho; Silveira, Juliana; Siqueira, João Victor; de Carvalho, Teotônio Soares; Solar, Ricardo R. C.; Tancredi, Nicola Savério Holanda; Thomson, James R.; Torres, Patrícia Carignano; Vaz-de-Mello, Fernando Zagury; Veiga, Ruan Carlo Stulpen; Venturieri, Adriano; Viana, Cecília; Weinhold, Diana; Zanetti, Ronald; Zuanon, Jansen

2013-01-01

Science has a critical role to play in guiding more sustainable development trajectories. Here, we present the Sustainable Amazon Network (Rede Amazônia Sustentável, RAS): a multidisciplinary research initiative involving more than 30 partner organizations working to assess both social and ecological dimensions of land-use sustainability in eastern Brazilian Amazonia. The research approach adopted by RAS offers three advantages for addressing land-use sustainability problems: (i) the collection of synchronized and co-located ecological and socioeconomic data across broad gradients of past and present human use; (ii) a nested sampling design to aid comparison of ecological and socioeconomic conditions associated with different land uses across local, landscape and regional scales; and (iii) a strong engagement with a wide variety of actors and non-research institutions. Here, we elaborate on these key features, and identify the ways in which RAS can help in highlighting those problems in most urgent need of attention, and in guiding improvements in land-use sustainability in Amazonia and elsewhere in the tropics. We also discuss some of the practical lessons, limitations and realities faced during the development of the RAS initiative so far. PMID:23610172

A Large-Scale Design Integration Approach Developed in Conjunction with the Ares Launch Vehicle Program

NASA Technical Reports Server (NTRS)

Redmon, John W.; Shirley, Michael C.; Kinard, Paul S.

2012-01-01

This paper presents a method for performing large-scale design integration, taking a classical 2D drawing envelope and interface approach and applying it to modern three dimensional computer aided design (3D CAD) systems. Today, the paradigm often used when performing design integration with 3D models involves a digital mockup of an overall vehicle, in the form of a massive, fully detailed, CAD assembly; therefore, adding unnecessary burden and overhead to design and product data management processes. While fully detailed data may yield a broad depth of design detail, pertinent integration features are often obscured under the excessive amounts of information, making them difficult to discern. In contrast, the envelope and interface method results in a reduction in both the amount and complexity of information necessary for design integration while yielding significant savings in time and effort when applied to today's complex design integration projects. This approach, combining classical and modern methods, proved advantageous during the complex design integration activities of the Ares I vehicle. Downstream processes, benefiting from this approach by reducing development and design cycle time, include: Creation of analysis models for the Aerodynamic discipline; Vehicle to ground interface development; Documentation development for the vehicle assembly.

Flexible and scalable methods for quantifying stochastic variability in the era of massive time-domain astronomical data sets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kelly, Brandon C.; Becker, Andrew C.; Sobolewska, Malgosia

2014-06-10

We present the use of continuous-time autoregressive moving average (CARMA) models as a method for estimating the variability features of a light curve, and in particular its power spectral density (PSD). CARMA models fully account for irregular sampling and measurement errors, making them valuable for quantifying variability, forecasting and interpolating light curves, and variability-based classification. We show that the PSD of a CARMA model can be expressed as a sum of Lorentzian functions, which makes them extremely flexible and able to model a broad range of PSDs. We present the likelihood function for light curves sampled from CARMA processes, placingmore » them on a statistically rigorous foundation, and we present a Bayesian method to infer the probability distribution of the PSD given the measured light curve. Because calculation of the likelihood function scales linearly with the number of data points, CARMA modeling scales to current and future massive time-domain data sets. We conclude by applying our CARMA modeling approach to light curves for an X-ray binary, two active galactic nuclei, a long-period variable star, and an RR Lyrae star in order to illustrate their use, applicability, and interpretation.« less

Large-eddy simulation of sand dune morphodynamics

NASA Astrophysics Data System (ADS)

Khosronejad, Ali; Sotiropoulos, Fotis; St. Anthony Falls Laboratory, University of Minnesota Team

2015-11-01

Sand dunes are natural features that form under complex interaction between turbulent flow and bed morphodynamics. We employ a fully-coupled 3D numerical model (Khosronejad and Sotiropoulos, 2014, Journal of Fluid Mechanics, 753:150-216) to perform high-resolution large-eddy simulations of turbulence and bed morphodynamics in a laboratory scale mobile-bed channel to investigate initiation, evolution and quasi-equilibrium of sand dunes (Venditti and Church, 2005, J. Geophysical Research, 110:F01009). We employ a curvilinear immersed boundary method along with convection-diffusion and bed-morphodynamics modules to simulate the suspended sediment and the bed-load transports respectively. The coupled simulation were carried out on a grid with more than 100 million grid nodes and simulated about 3 hours of physical time of dune evolution. The simulations provide the first complete description of sand dune formation and long-term evolution. The geometric characteristics of the simulated dunes are shown to be in excellent agreement with observed data obtained across a broad range of scales. This work was supported by NSF Grants EAR-0120914 (as part of the National Center for Earth-Surface Dynamics). Computational resources were provided by the University of Minnesota Supercomputing Institute.

SiC/SiC Composites: The Effect of Fiber Type and Fiber Architecture on Mechanical Properties

NASA Technical Reports Server (NTRS)

Morscher, Gregory N.

2008-01-01

Woven SiC/SiC composites represent a broad family of composites with a broad range of properties which are of interest for many energy-based and aero-based applications. Two important features of SiC/SiC composites which one must consider are the reinforcing fibers themselves and the fiber-architecture they are formed into. The range of choices for these two features can result in a wide range of elastic, mechanical, thermal, and electrical properties. In this presentation, it will be demonstrated how the effect of fiber-type and fiber architecture effects the important property of "matrix cracking stress" for slurry-cast melt-infiltrated SiC matrix composites, which is often considered to be a critical design parameter for this system of composites.

When does biodiversity matter? Assessing ecosystem services across broad regions using forest inventory and analysis data

Treesearch

Kevin M. Potter; Christopher W. Woodall; Christopher M. Oswalt; Basil V. III Iannone; Songlin Fei

2015-01-01

Biodiversity is expected to convey numerous functional benefits to forested ecosystems, including increased productivity and resilience. When assessing biodiversity, however, statistics that account for evolutionary relationships among species may be more ecologically meaningful than traditional measures such as species richness. In three broad-scale studies, we...

Explaining abrupt spatial transitions in agro-ecosystem responses to periods of extended drought

USDA-ARS?s Scientific Manuscript database

During the 1930’s, the North American central grassland region (CGR) experienced an extreme multi-year drought that resulted in broad scale plant mortality, massive dust storms and losses of soil and nutrients. Southern mixed grasslands were among the worst affected and experienced severe broad scal...

Broad-bandwidth Metamaterial Antireflection Coatings for Sub-Millimeter Astronomy and CMB Foreground Removal

NASA Astrophysics Data System (ADS)

McMahon, Jeff

Sub-millimeter observations are crucial for answering questions about star and galaxy formation; understanding galactic dust foregrounds; and for removing these foregrounds to detect the faint signature of inflationary gravitational waves in the polarization of the Cosmic Microwave Background (CMB). Achieving these goals requires improved, broad-band antireflection coated lenses and half-wave plates (HWPs). These optical elements will significantly boost the sensitivity and capability of future sub-millimeter and CMB missions. We propose to develop wide-bandwidth metamaterial antireflection coatings for silicon lenses and sapphire HWPs with 3:1 ratio bandwidth that are scalable across the sub-millimeter band from 300 GHz to 3 THz. This is an extension of our successful work on saw cut metamaterial AR coatings for silicon optics at millimeter wave lengths. These, and the proposed coatings consist of arrays of sub-wavelength scale features cut into optical surfaces that behave like simple dielectrics. We have demonstrated saw cut 3:1 bandwidth coatings on silicon lenses, but these coatings are limited to the millimeter wave band by the limitations of dicing saw machining. The crucial advance needed to extend these broad band coatings throughout the sub-millimeter band is the development of laser cut graded index metamaterial coatings. The proposed work includes developing the capability to fabricate these coatings, optimizing the design of these metamaterials, fabricating and testing prototype lenses and HWPs, and working with the PIPER collaboration to achieve a sub-orbital demonstration of this technology. The proposed work will develop potentially revolutionary new high performance coatings for the sub-millimeter bands, and cary this technology to TRL 7 paving the way for its use in space. We anticipate that there will be a wide range of applications for these coatings on future NASA balloons and satellites.

Evidence for hot clumpy accretion flow in the transitional millisecond pulsar PSR J1023+0038

NASA Astrophysics Data System (ADS)

Shahbaz, T.; Dallilar, Y.; Garner, A.; Eikenberry, S.; Veledina, A.; Gandhi, P.

2018-06-01

We present simultaneous optical and near-infrared (IR) photometry of the millisecond pulsar PSR J1023+0038 during its low-mass X-ray binary phase. The r΄- and Ks-band light curves show rectangular, flat-bottomed dips, similar to the X-ray mode-switching (active-passive state transitions) behaviour observed previously. The cross-correlation function (CCF) of the optical and near-IR data reveals a strong, broad negative anticorrelation at negative lags, a broad positive correlation at positive lags, with a strong, positive narrow correlation superimposed. The shape of the CCF resembles the CCF of black hole X-ray binaries but the time-scales are different. The features can be explained by reprocessing and a hot accretion flow close to the neutron star's magnetospheric radius. The optical emission is dominated by the reprocessed component, whereas the near-IR emission contains the emission from plasmoids in the hot accretion flow and a reprocessed component. The rapid active-passive state transition occurs when the hot accretion flow material is channelled on to the neutron star and is expelled from its magnetosphere. During the transition the optical reprocessing component decreases resulting in the removal of a blue spectral component. The accretion of clumpy material through the magnetic barrier of the neutron star produces the observed near-IR/optical CCF and variability. The dip at negative lags corresponds to the suppression of the near-IR synchrotron component in the hot flow, whereas the broad positive correlation at positive lags is driven by the increased synchrotron emission of the outflowing plasmoids. The narrow peak in the CCF is due to the delayed reprocessed component, enhanced by the increased X-ray emission.

Evaluating Experience-Based Geologic Field Instruction: Lessons Learned from A Large-Scale Eye-Tracking Experiment

NASA Astrophysics Data System (ADS)

Tarduno, J. A.; Walders, K.; Bono, R. K.; Pelz, J.; Jacobs, R.

2015-12-01

A course centered on experience-based learning in field geology has been offered ten times at the University of Rochester. The centerpiece of the course is a 10-day field excursion to California featuring a broad cross-section of the geology of the state, from the San Andreas Fault to Death Valley. Here we describe results from a large-scale eye-tracking experiment aimed at understanding how experts and novices acquire visual geologic information. One ultimate goal of the project is to determine whether expert gaze patterns can be quantified to improve the instruction of beginning geology students. Another goal is to determine if aspects of the field experience can be transferred to the classroom/laboratory. Accordingly, ultra-high resolution segmented panoramic images have been collected at key sites visited during the field excursion. We have found that strict controls are needed in the field to obtain meaningful data; this often involves behavior atypical of geologists (e.g. limiting the field of view prior to data collection and placing time limits on scene viewing). Nevertheless some general conclusions can be made from a select data set. After an initial quick search, experts tend to exhibit scanning behavior that appears to support hypothesis testing. Novice fixations appear to define a scattered search pattern and/or one distracted by geologic noise in a scene. Noise sources include modern erosion features and vegetation. One way to quantify noise is through the use of saliency maps. With the caveat that our expert data set is small, our preliminary analysis suggests that experts tend to exhibit top-down behavior (indicating hypothesis driven responses) whereas novices show bottom-up gaze patterns, influenced by more salient features in a scene. We will present examples and discuss how these observations might be used to improve instruction.

75 years of dryland science: Trends and gaps in arid ecology literature.

PubMed

Greenville, Aaron C; Dickman, Chris R; Wardle, Glenda M

2017-01-01

Growth in the publication of scientific articles is occurring at an exponential rate, prompting a growing need to synthesise information in a timely manner to combat urgent environmental problems and guide future research. Here, we undertake a topic analysis of dryland literature over the last 75 years (8218 articles) to identify areas in arid ecology that are well studied and topics that are emerging. Four topics-wetlands, mammal ecology, litter decomposition and spatial modelling, were identified as 'hot topics' that showed higher than average growth in publications from 1940 to 2015. Five topics-remote sensing, climate, habitat and spatial, agriculture and soils-microbes, were identified as 'cold topics', with lower than average growth over the survey period, but higher than average numbers of publications. Topics in arid ecology clustered into seven broad groups on word-based similarity. These groups ranged from mammal ecology and population genetics, broad-scale management and ecosystem modelling, plant ecology, agriculture and ecophysiology, to populations and paleoclimate. These patterns may reflect trends in the field of ecology more broadly. We also identified two broad research gaps in arid ecology: population genetics, and habitat and spatial research. Collaborations between population genetics and ecologists and investigations of ecological processes across spatial scales would contribute profitably to the advancement of arid ecology and to ecology more broadly.

High-resolution bathymetry and acoustic geophysical data from Santa Maria di Leuca Cold Water Coral province (Northern Ionian Sea—Apulian continental slope)

NASA Astrophysics Data System (ADS)

Savini, A.; Corselli, C.

2010-03-01

A total of 800 km 2 of multibeam echo-sounder coverage, roughly 800 km of chirp-sonar data and 18 km of side-scan sonar profiles (100/500 kHz) were acquired a few km offshore Santa Maria di Leuca (south-eastern Italy), from 200 m to 1300 m water depth. The explored area belongs to the upper slope of the gently south-eastward dipping Apulian continental margin (northern Ionian Sea). Acoustic datasets were collected, by three different oceanographic expeditions, where evidence of living cold-water coral (CWC) colonies were documented by previous surveys and samples. High-resolution multibeam bathymetry indicated an extensive rough seafloor with an irregular faulted upper surface to the west (reflecting large-scale tectonic control on the margin) and a highly disrupted upper slope formed by prominent downslope mass-movements to the north. A broad area in the east was influenced by mass-transport deposition, which resulted in a very complex hummocky seafloor, mainly shaped by detached block-like features and failure-related bedforms (i.e. low scarps, downslope lineations and compressional ridges). From the shallow seismic-stratigraphic data, failure events appeared to be multiple and recurrent and chaotic reflectors, both buried and exposed at the seafloor, affected most of the investigated area. Drift sedimentation was also recognised along a central large ridge, resulting in an interplay between contour currents and downslope turbidity currents. The spatial distribution of the CWC reefs was inferred from the acoustic facies interpretation based on video images and ground-truthed by sediment samples. It appeared that: (1) within the investigated area, living coral frameworks were located along large topographic highs facing the main flow of the bottom currents, where hard and firm substrata and/or failure-related sediment bedforms occurred; (2) CWC mainly settled on clustered (and isolated) mound-like features, tens to a few hundreds of metres long and no more than 25 m high and were located between 600 and 900 m water depth, within the broad area affected by downslope mass-transport deposits. Such mound-like morphologies could thus be interpreted as a result of sediment accreted by coral growth, with the consequent sediment trapping on small-scale positive seafloor irregularities; formed by different types of Pleistocene-exposed mass-transport deposits, their burial prevented by bottom currents.

A high-resolution synthetic bed elevation grid of the Antarctic continent

NASA Astrophysics Data System (ADS)

Graham, Felicity S.; Roberts, Jason L.; Galton-Fenzi, Ben K.; Young, Duncan; Blankenship, Donald; Siegert, Martin J.

2017-05-01

Digital elevation models of Antarctic bed topography are smoothed and interpolated onto low-resolution ( > 1 km) grids as current observed topography data are generally sparsely and unevenly sampled. This issue has potential implications for numerical simulations of ice-sheet dynamics, especially in regions prone to instability where detailed knowledge of the topography, including fine-scale roughness, is required. Here, we present a high-resolution (100 m) synthetic bed elevation terrain for Antarctica, encompassing the continent, continental shelf, and seas south of 60° S. Although not identically matching observations, the synthetic bed surface - denoted as HRES - preserves topographic roughness characteristics of airborne and ground-based ice-penetrating radar data measured by the ICECAP (Investigating the Cryospheric Evolution of the Central Antarctic Plate) consortium or used to create the Bedmap1 compilation. Broad-scale ( > 5 km resolution) features of the Antarctic landscape are incorporated using a low-pass filter of the Bedmap2 bed elevation data. HRES has applicability in high-resolution ice-sheet modelling studies, including investigations of the interaction between topography, ice-sheet dynamics, and hydrology, where processes are highly sensitive to bed elevations and fine-scale roughness. The data are available for download from the Australian Antarctic Data Centre (doi:10.4225/15/57464ADE22F50).

Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities

PubMed Central

Emerson, Brent C.; Cicconardi, Francesco; Fanciulli, Pietro P.; Shaw, Peter J. A.

2011-01-01

There has been much recent interest and progress in the characterization of community structure and community assembly processes through the application of phylogenetic methods. To date most focus has been on groups of taxa for which some relevant detail of their ecology is known, for which community composition is reasonably easily quantified and where the temporal scale is such that speciation is not likely to feature. Here, we explore how we might apply a molecular genetic approach to investigate community structure and assembly at broad taxonomic and geographical scales, where we have little knowledge of species ecology, where community composition is not easily quantified, and where speciation is likely to be of some importance. We explore these ideas using the class Collembola as a focal group. Gathering molecular evidence for cryptic diversity suggests that the ubiquity of many species of Collembola across the landscape may belie greater community complexity than would otherwise be assumed. However, this morphologically cryptic species-level diversity poses a challenge for attempts to characterize diversity both within and among local species assemblages. Recent developments in high throughput parallel sequencing technology, combined with mtDNA barcoding, provide an advance that can bring together the fields of phylogenetic and phylogeographic analysis to bear on this problem. Such an approach could be standardized for analyses at any geographical scale for a range of taxonomic groups to quantify the formation and composition of species assemblages. PMID:21768154

Measuring Work Ability with Its Antecedents: Evaluation of the Work Ability Survey.

PubMed

Voltmer, Jan-Bennet; Deller, Jürgen

2017-07-24

Purpose The revised version of the Work Ability Survey (WAS-R) assesses work ability on several sub-scales at the intersection of personal and organizational capacity, thus adding to the measurement of work ability by integrating the holistic model. It, therefore, improves on two features of the current standard measurement tool of work ability, the Work Ability Index (WAI): (1) a ceiling effect and (2) limited detail due to a focus on physical health and personal capacity. Method In two samples (n 1  = 1093, n 2  = 359), psychometric properties and the structure of the WAS-R were analyzed. To evaluate construct validity, inter-correlations of the WAS-R and WAI, sickness absence, expected and desired retirement age, and post-retirement work intention were calculated. Results The WAS-R was found to be distributed closer to normality than the WAI. The structural analyses yielded acceptable results for the hypothesized model. The WAS-R was adequately correlated with the WAI, negatively with sickness absence, and positively with desired retirement age. Conclusions The WAS-R extends the measurement of work ability, reflecting organizations' work demands. Its broad sub-scales lead to high acceptance of the results within the participating companies. In particular, the organizational capacity scales can be used to guide interventions aiming at organizational characteristics to improve work ability.

The similarity of broad iron lines in X-ray binaries and active galactic nuclei

NASA Astrophysics Data System (ADS)

Walton, D. J.; Reis, R. C.; Cackett, E. M.; Fabian, A. C.; Miller, J. M.

2012-05-01

We have compared the 2001 XMM-Newton spectra of the stellar mass black hole binary XTE J1650-500 and the active galaxy MCG-6-30-15, focusing on the broad, excess emission features at ˜4-7 keV displayed by both sources. Such features are frequently observed in both low-mass X-ray binaries and active galactic nuclei (AGN). For the former case it is generally accepted that the excess arises due to iron emission, but there is some controversy over whether their width is partially enhanced by instrumental processes, and hence also over the intrinsic broadening mechanism. Meanwhile, in the latter case, the origin of this feature is still subject to debate; physically motivated reflection and absorption interpretations are both able to reproduce the observed spectra. In this work we make use of the contemporaneous BeppoSAX data to demonstrate that the breadth of the excess observed in XTE J1650-500 is astrophysical rather than instrumental, and proceed to highlight the similarity of the excesses present in this source and MCG-6-30-15. Both optically thick accretion discs and optically thin coronae, which in combination naturally give rise to relativistically broadened iron lines when the disc extends close to the black hole, are commonly observed in both classes of object. The simplest solution is that the broad emission features present arise from a common process, which we argue must be reflection from the inner regions of an accretion disc around a rapidly rotating black hole; for XTE J1650-500 we find spin constraints of 0.84 ≤a*≤ 0.98 at the 90 per cent confidence level. Other interpretations proposed for AGN add potentially unnecessary complexities to the theoretical framework of accretion in strong gravity.

Same Constructs, Different Results: Examining the Consistency of Two Behavior-Rating Scales with Referred Preschoolers

ERIC Educational Resources Information Center

Myers, Carl L.; Bour, Jennifer L.; Sidebottom, Kristina J.; Murphy, Sara B.; Hakman, Melissa

2010-01-01

Broad-band or multidimensional behavior-rating scales are common tools for evaluating children. Two popular behavior-rating scales, the Behavior Assessment System for Children, Second Edition (BASC-2; Reynolds & Kamphaus, 2004) and the Child Behavior Checklist (CBCL; Achenbach & Rescorla, 2000), have undergone downward extensions so that…

Estimating landscape-scale impacts of agricultural management on soil carbon using measurements and models.

USDA-ARS?s Scientific Manuscript database

Agriculture covers 40% of Earth’s ice-free land area and has broad impacts on global biogeochemical cycles. While some agricultural management changes are small in scale or impact, others have the potential to shift biogeochemical cycles at landscape and larger scales if widely adopted. Understandin...

Extreme Variability in a Broad Absorption Line Quasar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stern, Daniel; Jun, Hyunsung D.; Graham, Matthew J.

CRTS J084133.15+200525.8 is an optically bright quasar at z = 2.345 that has shown extreme spectral variability over the past decade. Photometrically, the source had a visual magnitude of V ∼ 17.3 between 2002 and 2008. Then, over the following five years, the source slowly brightened by approximately one magnitude, to V ∼ 16.2. Only ∼1 in 10,000 quasars show such extreme variability, as quantified by the extreme parameters derived for this quasar assuming a damped random walk model. A combination of archival and newly acquired spectra reveal the source to be an iron low-ionization broad absorption line quasar withmore » extreme changes in its absorption spectrum. Some absorption features completely disappear over the 9 years of optical spectra, while other features remain essentially unchanged. We report the first definitive redshift for this source, based on the detection of broad H α in a Keck/MOSFIRE spectrum. Absorption systems separated by several 1000 km s{sup −1} in velocity show coordinated weakening in the depths of their troughs as the continuum flux increases. We interpret the broad absorption line variability to be due to changes in photoionization, rather than due to motion of material along our line of sight. This source highlights one sort of rare transition object that astronomy will now be finding through dedicated time-domain surveys.« less

Specific excitatory connectivity for feature integration in mouse primary visual cortex

PubMed Central

Molina-Luna, Patricia; Roth, Morgane M.

2017-01-01

Local excitatory connections in mouse primary visual cortex (V1) are stronger and more prevalent between neurons that share similar functional response features. However, the details of how functional rules for local connectivity shape neuronal responses in V1 remain unknown. We hypothesised that complex responses to visual stimuli may arise as a consequence of rules for selective excitatory connectivity within the local network in the superficial layers of mouse V1. In mouse V1 many neurons respond to overlapping grating stimuli (plaid stimuli) with highly selective and facilitatory responses, which are not simply predicted by responses to single gratings presented alone. This complexity is surprising, since excitatory neurons in V1 are considered to be mainly tuned to single preferred orientations. Here we examined the consequences for visual processing of two alternative connectivity schemes: in the first case, local connections are aligned with visual properties inherited from feedforward input (a ‘like-to-like’ scheme specifically connecting neurons that share similar preferred orientations); in the second case, local connections group neurons into excitatory subnetworks that combine and amplify multiple feedforward visual properties (a ‘feature binding’ scheme). By comparing predictions from large scale computational models with in vivo recordings of visual representations in mouse V1, we found that responses to plaid stimuli were best explained by assuming feature binding connectivity. Unlike under the like-to-like scheme, selective amplification within feature-binding excitatory subnetworks replicated experimentally observed facilitatory responses to plaid stimuli; explained selective plaid responses not predicted by grating selectivity; and was consistent with broad anatomical selectivity observed in mouse V1. Our results show that visual feature binding can occur through local recurrent mechanisms without requiring feedforward convergence, and that such a mechanism is consistent with visual responses and cortical anatomy in mouse V1. PMID:29240769

Couplings between the seasonal cycles of surface thermodynamics and radiative fluxes in the semi-arid Sahel

NASA Astrophysics Data System (ADS)

Guichard, F.; Kergoat, L.; Mougin, E.; Timouk, F.; Bock, O.; Hiernaux, P.

2009-04-01

A good knowledge of surface fluxes and atmospheric low levels is central to improving our understanding of the West African monsoon. This study provides a quantitative analysis of the peculiar seasonal and diurnal cycles of surface thermodynamics and radiative fluxes encountered in Central Sahel. It is based on a multi-year dataset collected in the Malian Gourma over a sandy soil at 1.5°W-15.3°N (a site referred to as Agoufou) with an automated weather station and a sunphotometer (AERONET), complemented by observations from the AMMA field campaign. The seasonal cycle of this Tropical region is characterized by a broad maximum of temperature in May, following the first minimum of the solar zenith angle by a few weeks, when Agoufou lies within the West African Heat-Low, and a late summer maximum of equivalent potential temperature within the core of the monsoon season, around the second yearly maximum of solar zenith angle, as the temperature reaches its Summer minimum. More broadly, subtle balances between surface air temperature and moisture fields are found on a range of scales. For instance, during the monsoon, apart from August, their opposite daytime fluctuations (warming, drying) lead to an almost flat diurnal cycle of the equivalent potential temperature at the surface. This feature stands out in contrast to other more humid continental regions. Here, the strong dynamics associated with the transition from a drier hot Spring to a brief cooler wet tropical Summer climate involves very large transformations of the diurnal cycles. The Summer increase of surface net radiation, Rnet, is also strong; typically 10-day mean Rnet reaches about 5 times its Winter minimum (~30 W.m-2) in August (~150 W.m-2). A major feature revealed by observations is that this increase is mostly driven by modifications of the surface upwelling fluxes shaped by rainfall events and vegetation phenology (surface cooling and darkening), while the direct impact of atmospheric changes on the total incoming radiation is limited to shorter time scales in Summer over this Central Sahelian location. However, observations also reveal astonishing radiative signatures of the monsoon on the surface incoming radiative flux. The incoming longwave flux does not reach its maximum during the monsoon season when the atmosphere is the most cloudy and humid, but earlier, prior to the onset of rainfall, as the dry and warmer atmosphere suddenly becomes moist. This feature points to the significance of the atmospheric cooling during the monsoon season and of the aerosol amounts in Spring. It also reveals that prior to the rainfall onset, the monsoon flow plays a major role on the diurnal cycle of the low-level temperature, due to its radiative properties. Conversely, the incoming solar radiation at the surface increases slightly from late Spring to the core monsoon season even though the atmosphere becomes moister and cloudier; this again involves the high aerosol optical thickness prevailing in late Spring and early Summer against a weaker shortwave forcing by monsoon clouds. The climatological combination of thermodynamic and radiative variations taking place during the monsoon eventually leads to a positive correlation between the equivalent potential temperature and Rnet. This correlation is, in turn, broadly consistent with an overall positive soil moisture rainfall feedback at this scale. Beyond these Sahelian-specific features, and in agreement with some previous studies, strong links are found between the atmospheric humidity and the net longwave flux, LWnet at the surface all year long, even across the much lower humidity ranges encountered in this region. They point to, and locally quantify the major control of water vapour and water-related processes on the surface-atmosphere thermal coupling as measured by LWnet. Namely, they are found to be more tightly coupled (LWnet closer to 0) when the atmosphere is moister and cloudier. Observational results such as presented here provide valuable ground truth for assessing models over a continental area displaying a challenging variety of surface-atmosphere regimes throughout the year, from a desert-like to a rainy tropical-like climate during the core of the monsoon. Indeed, the mechanisms emphasized by these data do not all comply to existing conceptual schemes.

Ecosystem-level water-use efficiency inferred from eddy covariance data: definitions, patterns and spatial up-scaling

NASA Astrophysics Data System (ADS)

Reichstein, M.; Beer, C.; Kuglitsch, F.; Papale, D.; Soussana, J. A.; Janssens, I.; Ciais, P.; Baldocchi, D.; Buchmann, N.; Verbeeck, H.; Ceulemans, R.; Moors, E.; Köstner, B.; Schulze, D.; Knohl, A.; Law, B. E.

2007-12-01

In this presentation we discuss ways to infer and to interpret water-use efficiency at ecosystem level (WUEe) from eddy covariance flux data and possibilities for scaling these patterns to regional and continental scale. In particular we convey the following: WUEe may be computed as a ratio of integrated fluxes or as the slope of carbon versus water fluxes offering different chances for interpretation. If computed from net ecosystem exchange and evapotranspiration on has to take of counfounding effects of respiration and soil evaporation. WUEe time-series at diurnal and seasonal scale is a valuable ecosystem physiological diagnostic for example about ecosystem-level responses to drought. Most often WUEe decreases during dry periods. The mean growing season ecosystem water-use efficiency of gross carbon uptake (WUEGPP) is highest in temperate broad-leaved deciduous forests, followed by temperate mixed forests, temperate evergreen conifers, Mediterranean broad-leaved deciduous forests, Mediterranean broad-leaved evergreen forests and Mediterranean evergreen conifers and boreal, grassland and tundra ecosystems. Water-use efficiency exhibits a temporally quite conservative relation with atmospheric water vapor pressure deficit (VPD) that is modified between sites by leaf area index (LAI) and soil quality, such that WUEe increases with LAI and soil water holding capacity which is related to texture. This property and tight coupling between carbon and water cycles is used to estimate catchment-scale water-use efficiency and primary productivity by integration of space-borne earth observation and river discharge data.

Steady induction effects in geomagnetism. Part 1C: Geomagnetic estimation of steady surficial core motions: Application to the definitive geomagnetic reference field models

NASA Technical Reports Server (NTRS)

Voorhies, Coerte V.

1993-01-01

In the source-free mantle/frozen-flux core magnetic earth model, the non-linear inverse steady motional induction problem was solved using the method presented in Part 1B. How that method was applied to estimate steady, broad-scale fluid velocity fields near the top of Earth's core that induce the secular change indicated by the Definitive Geomagnetic Reference Field (DGRF) models from 1945 to 1980 are described. Special attention is given to the derivation of weight matrices for the DGRF models because the weights determine the apparent significance of the residual secular change. The derived weight matrices also enable estimation of the secular change signal-to-noise ratio characterizing the DGRF models. Two types of weights were derived in 1987-88: radial field weights for fitting the evolution of the broad-scale portion of the radial geomagnetic field component at Earth's surface implied by the DGRF's, and general weights for fitting the evolution of the broad-scale portion of the scalar potential specified by these models. The difference is non-trivial because not all the geomagnetic data represented by the DGRF's constrain the radial field component. For radial field weights (or general weights), a quantitatively acceptable explication of broad-scale secular change relative to the 1980 Magsat epoch must account for 99.94271 percent (or 99.98784 percent) of the total weighted variance accumulated therein. Tolerable normalized root-mean-square weighted residuals of 2.394 percent (or 1.103 percent) are less than the 7 percent errors expected in the source-free mantle/frozen-flux core approximation.

Assessing health impacts in complex eco-epidemiological settings in the humid tropics: Modular baseline health surveys

DOE Office of Scientific and Technical Information (OSTI.GOV)

Winkler, Mirko S., E-mail: mirko.winkler@unibas.ch; University of Basel, P.O. Box, CH-4003 Basel; Divall, Mark J., E-mail: mdivall@shapeconsulting.org

2012-02-15

The quantitative assessment of health impacts has been identified as a crucial feature for realising the full potential of health impact assessment (HIA). In settings where demographic and health data are notoriously scarce, but there is a broad range of ascertainable ecological, environmental, epidemiological and socioeconomic information, a diverse toolkit of data collection strategies becomes relevant for the mainly small-area impacts of interest. We present a modular, cross-sectional baseline health survey study design, which has been developed for HIA of industrial development projects in the humid tropics. The modular nature of our toolkit allows our methodology to be readily adaptedmore » to the prevailing eco-epidemiological characteristics of a given project setting. Central to our design is a broad set of key performance indicators, covering a multiplicity of health outcomes and determinants at different levels and scales. We present experience and key findings from our modular baseline health survey methodology employed in 14 selected sentinel sites within an iron ore mining project in the Republic of Guinea. We argue that our methodology is a generic example of rapid evidence assembly in difficult-to-reach localities, where improvement of the predictive validity of the assessment and establishment of a benchmark for longitudinal monitoring of project impacts and mitigation efforts is needed.« less

Spatial Structure of Seagrass Suggests That Size-Dependent Plant Traits Have a Strong Influence on the Distribution and Maintenance of Tropical Multispecies Meadows

PubMed Central

Ooi, Jillian L. S.; Van Niel, Kimberly P.; Kendrick, Gary A.; Holmes, Karen W.

2014-01-01

Background Seagrass species in the tropics occur in multispecies meadows. How these meadows are maintained through species co-existence and what their ecological drivers may be has been an overarching question in seagrass biogeography. In this study, we quantify the spatial structure of four co-existing species and infer potential ecological processes from these structures. Methods and Results Species presence/absence data were collected using underwater towed and dropped video cameras in Pulau Tinggi, Malaysia. The geostatistical method, utilizing semivariograms, was used to describe the spatial structure of Halophila spp, Halodule uninervis, Syringodium isoetifolium and Cymodocea serrulata. Species had spatial patterns that were oriented in the along-shore and across-shore directions, nested with larger species in meadow interiors, and consisted of multiple structures that indicate the influence of 2–3 underlying processes. The Linear Model of Coregionalization (LMC) was used to estimate the amount of variance contributing to the presence of a species at specific spatial scales. These distances were <2.5 m (micro-scale), 2.5–50 m (fine-scale) and >50 m (broad-scale) in the along-shore; and <2.5 m (micro-scale), 2.5–140 m (fine-scale) and >140 m (broad-scale) in the across-shore. The LMC suggests that smaller species (Halophila spp and H. uninervis) were most influenced by broad-scale processes such as hydrodynamics and water depth whereas large, localised species (S. isoetifolium and C. serrulata) were more influenced by finer-scale processes such as sediment burial, seagrass colonization and growth, and physical disturbance. Conclusion In this study, we provide evidence that spatial structure is distinct even when species occur in well-mixed multispecies meadows, and we suggest that size-dependent plant traits have a strong influence on the distribution and maintenance of tropical marine plant communities. This study offers a contrast from previous spatial models of seagrasses which have largely focused on monospecific temperate meadows. PMID:24497978

Spatial structure of seagrass suggests that size-dependent plant traits have a strong influence on the distribution and maintenance of tropical multispecies meadows.

PubMed

Ooi, Jillian L S; Van Niel, Kimberly P; Kendrick, Gary A; Holmes, Karen W

2014-01-01

Seagrass species in the tropics occur in multispecies meadows. How these meadows are maintained through species co-existence and what their ecological drivers may be has been an overarching question in seagrass biogeography. In this study, we quantify the spatial structure of four co-existing species and infer potential ecological processes from these structures. Species presence/absence data were collected using underwater towed and dropped video cameras in Pulau Tinggi, Malaysia. The geostatistical method, utilizing semivariograms, was used to describe the spatial structure of Halophila spp, Halodule uninervis, Syringodium isoetifolium and Cymodocea serrulata. Species had spatial patterns that were oriented in the along-shore and across-shore directions, nested with larger species in meadow interiors, and consisted of multiple structures that indicate the influence of 2-3 underlying processes. The Linear Model of Coregionalization (LMC) was used to estimate the amount of variance contributing to the presence of a species at specific spatial scales. These distances were <2.5 m (micro-scale), 2.5-50 m (fine-scale) and >50 m (broad-scale) in the along-shore; and <2.5 m (micro-scale), 2.5-140 m (fine-scale) and >140 m (broad-scale) in the across-shore. The LMC suggests that smaller species (Halophila spp and H. uninervis) were most influenced by broad-scale processes such as hydrodynamics and water depth whereas large, localised species (S. isoetifolium and C. serrulata) were more influenced by finer-scale processes such as sediment burial, seagrass colonization and growth, and physical disturbance. In this study, we provide evidence that spatial structure is distinct even when species occur in well-mixed multispecies meadows, and we suggest that size-dependent plant traits have a strong influence on the distribution and maintenance of tropical marine plant communities. This study offers a contrast from previous spatial models of seagrasses which have largely focused on monospecific temperate meadows.

Interpretive front-of-pack nutrition labels. Comparing competing recommendations.

PubMed

Maubach, Ninya; Hoek, Janet; Mather, Damien

2014-11-01

Many stakeholders support introducing an interpretive front-of-pack (FOP) nutrition label, but disagree over the form it should take. In late 2012, an expert working group established by the New Zealand government recommended the adoption of an untested summary rating system: a Star label. This study used a best-worst scaling choice experiment to estimate how labels featuring the new Star rating, the Multiple Traffic Light (MTL), Daily Intake Guide (DIG), and a no-FOP control affected consumers' choice behaviours and product perceptions. Nutrient-content and health claims were included in the design. We also assessed whether respondents who used more or less information during the choice tasks differed in their selection patterns. Overall, while respondents made broadly similar choices with respect to the MTL and Star labels, the MTL format had a significantly greater impact on depressing preference as a food's nutritional profile became less healthy. Health claims increased rankings of less nutritious options, though this effect was less pronounced when the products featured an MTL. Further, respondents were best able to differentiate products' healthiness with MTL labels. The proposed summary Stars system had less effect on choice patterns than an MTL label and our findings highlight the need for policy makers to ensure that decisions to introduce FOP labels are underpinned by robust research evidence. These results suggest that the proposed summary Stars system will have less effect on shifting food choice patterns than interpretive FOP nutrition label featuring traffic light ratings. Copyright © 2014 Elsevier Ltd. All rights reserved.

Field Validation of Habitat Suitability Models for Vulnerable Marine Ecosystems in the South Pacific Ocean: Implications for the use of Broad-scale Models in Fisheries Management

NASA Astrophysics Data System (ADS)

Anderson, O. F.; Guinotte, J. M.; Clark, M. R.; Rowden, A. A.; Mormede, S.; Davies, A. J.; Bowden, D.

2016-02-01

Spatial management of vulnerable marine ecosystems requires accurate knowledge of their distribution. Predictive habitat suitability modelling, using species presence data and a suite of environmental predictor variables, has emerged as a useful tool for inferring distributions outside of known areas. However, validation of model predictions is typically performed with non-independent data. In this study, we describe the results of habitat suitability models constructed for four deep-sea reef-forming coral species across a large region of the South Pacific Ocean using MaxEnt and Boosted Regression Tree modelling approaches. In order to validate model predictions we conducted a photographic survey on a set of seamounts in an un-sampled area east of New Zealand. The likelihood of habitat suitable for reef forming corals on these seamounts was predicted to be variable, but very high in some regions, particularly where levels of aragonite saturation, dissolved oxygen, and particulate organic carbon were optimal. However, the observed frequency of coral occurrence in analyses of survey photographic data was much lower than expected, and patterns of observed versus predicted coral distribution were not highly correlated. The poor performance of these broad-scale models is attributed to lack of recorded species absences to inform the models, low precision of global bathymetry models, and lack of data on the geomorphology and substrate of the seamounts at scales appropriate to the modelled taxa. This demonstrates the need to use caution when interpreting and applying broad-scale, presence-only model results for fisheries management and conservation planning in data poor areas of the deep sea. Future improvements in the predictive performance of broad-scale models will rely on the continued advancement in modelling of environmental predictor variables, refinements in modelling approaches to deal with missing or biased inputs, and incorporation of true absence data.

Ecoregional-scale monitoring within conservation areas, in a rapidly changing climate

USGS Publications Warehouse

Beever, Erik A.; Woodward, Andrea

2011-01-01

Long-term monitoring of ecological systems can prove invaluable for resource management and conservation. Such monitoring can: (1) detect instances of long-term trend (either improvement or deterioration) in monitored resources, thus providing an early-warning indication of system change to resource managers; (2) inform management decisions and help assess the effects of management actions, as well as anthropogenic and natural disturbances; and (3) provide the grist for supplemental research on mechanisms of system dynamics and cause-effect relationships (Fancy et al., 2009). Such monitoring additionally provides a snapshot of the status of monitored resources during each sampling cycle, and helps assess whether legal standards and regulations are being met. Until the last 1-2 decades, tracking and understanding changes in condition of natural resources across broad spatial extents have been infrequently attempted. Several factors, however, are facilitating the achievement of such broad-scale investigation and monitoring. These include increasing awareness of the importance of landscape context, greater prevalence of regional and global environmental stressors, and the rise of landscape-scale programs designed to manage and monitor biological systems. Such programs include the US Forest Service's Forest Inventory and Analysis (FIA) Program (Moser et al., 2008), Canada's National Forest Inventory, the 3Q Programme for monitoring agricultural landscapes of Norway (Dramstad et al., 2002), and the emerging (US) Landscape Conservation Cooperatives (USDOI Secretarial Order 3289, 2009; Anonymous, 2011). This Special Section explores the underlying design considerations, as well as many pragmatic aspects associated with program implementation and interpretation of results from broad-scale monitoring systems, particularly within the constraints of high-latitude contexts (e.g., low road density, short field season, dramatic fluctuations in temperature). Although Alaska is the focus of most papers in this Special Section, we posit that many of the issues that characterize the remote, relatively undisturbed ecosystems of high northern latitudes are widespread and thus applicable to natural-resource management and conservation across northern portions of the Holarctic ecozone and indeed anywhere broad-scale monitoring is contemplated.

Research-Driven Reading Assessment: Drilling to the Core

ERIC Educational Resources Information Center

Hempenstall, Kerry

2009-01-01

There is considerable interest and controversy in the community concerning how our students are faring in the task of mastering reading. Broad scale assessment, formerly at a State level and now at a National level (NAPLAN), is potentially valuable in helping answer this question in a broad sense. However, there are limitations to the value of…

Technical and Practical Issues in the Structure and Clinical Invariance of the Wechsler Scales: A Rejoinder to Commentaries

ERIC Educational Resources Information Center

Weiss, Lawrence G.; Keith, Timothy Z.; Zhu, Jianjun; Chen, Hsinyi

2013-01-01

This discussion article addresses issues related to expansion of the Wechsler model from four to five factors; multiple broad CHC abilities measured by the Arithmetic subtest; advantages and disadvantages of including complex tasks requiring integration of multiple broad abilities when measuring intelligence; limitations of factor analysis, which…

Field significance of performance measures in the context of regional climate model evaluation. Part 2: precipitation

NASA Astrophysics Data System (ADS)

Ivanov, Martin; Warrach-Sagi, Kirsten; Wulfmeyer, Volker

2018-04-01

A new approach for rigorous spatial analysis of the downscaling performance of regional climate model (RCM) simulations is introduced. It is based on a multiple comparison of the local tests at the grid cells and is also known as `field' or `global' significance. The block length for the local resampling tests is precisely determined to adequately account for the time series structure. New performance measures for estimating the added value of downscaled data relative to the large-scale forcing fields are developed. The methodology is exemplarily applied to a standard EURO-CORDEX hindcast simulation with the Weather Research and Forecasting (WRF) model coupled with the land surface model NOAH at 0.11 ∘ grid resolution. Daily precipitation climatology for the 1990-2009 period is analysed for Germany for winter and summer in comparison with high-resolution gridded observations from the German Weather Service. The field significance test controls the proportion of falsely rejected local tests in a meaningful way and is robust to spatial dependence. Hence, the spatial patterns of the statistically significant local tests are also meaningful. We interpret them from a process-oriented perspective. While the downscaled precipitation distributions are statistically indistinguishable from the observed ones in most regions in summer, the biases of some distribution characteristics are significant over large areas in winter. WRF-NOAH generates appropriate stationary fine-scale climate features in the daily precipitation field over regions of complex topography in both seasons and appropriate transient fine-scale features almost everywhere in summer. As the added value of global climate model (GCM)-driven simulations cannot be smaller than this perfect-boundary estimate, this work demonstrates in a rigorous manner the clear additional value of dynamical downscaling over global climate simulations. The evaluation methodology has a broad spectrum of applicability as it is distribution-free, robust to spatial dependence, and accounts for time series structure.

Accuracy Maximization Analysis for Sensory-Perceptual Tasks: Computational Improvements, Filter Robustness, and Coding Advantages for Scaled Additive Noise

PubMed Central

Burge, Johannes

2017-01-01

Accuracy Maximization Analysis (AMA) is a recently developed Bayesian ideal observer method for task-specific dimensionality reduction. Given a training set of proximal stimuli (e.g. retinal images), a response noise model, and a cost function, AMA returns the filters (i.e. receptive fields) that extract the most useful stimulus features for estimating a user-specified latent variable from those stimuli. Here, we first contribute two technical advances that significantly reduce AMA’s compute time: we derive gradients of cost functions for which two popular estimators are appropriate, and we implement a stochastic gradient descent (AMA-SGD) routine for filter learning. Next, we show how the method can be used to simultaneously probe the impact on neural encoding of natural stimulus variability, the prior over the latent variable, noise power, and the choice of cost function. Then, we examine the geometry of AMA’s unique combination of properties that distinguish it from better-known statistical methods. Using binocular disparity estimation as a concrete test case, we develop insights that have general implications for understanding neural encoding and decoding in a broad class of fundamental sensory-perceptual tasks connected to the energy model. Specifically, we find that non-orthogonal (partially redundant) filters with scaled additive noise tend to outperform orthogonal filters with constant additive noise; non-orthogonal filters and scaled additive noise can interact to sculpt noise-induced stimulus encoding uncertainty to match task-irrelevant stimulus variability. Thus, we show that some properties of neural response thought to be biophysical nuisances can confer coding advantages to neural systems. Finally, we speculate that, if repurposed for the problem of neural systems identification, AMA may be able to overcome a fundamental limitation of standard subunit model estimation. As natural stimuli become more widely used in the study of psychophysical and neurophysiological performance, we expect that task-specific methods for feature learning like AMA will become increasingly important. PMID:28178266

Toward Characterizing the 4D Structure of Precipitation at the Headwater Catchment Scale in Mountainous Regions

NASA Astrophysics Data System (ADS)

Barros, A. P.; Prat, O. P.; Sun, X.; Shrestha, P.; Miller, D.

2009-04-01

The classic conceptual model of orographic rainfall depicts strong stationary horizontal gradients in rainfall accumulations and landcover contrasts across topographic divides (i.e. the rainshadow) at the broad scale of mountain ranges, or isolated orographic features. Whereas this model is sufficient to fingerprint the land-modulation of precipitation at the macroscale in climate studies, and can be useful to force geological models of land evolution for example, it fails to describe the active 4D space-time gradients that are critical at the fundamental scale of mountain hydrometeorology and hydrology, that is the headwater catchment. That is, the scale at which flash-floods are generated and landslides are triggered. Our work surveying the spatial and temporal habits of clouds and rainfall for some of the world's major mountain ranges from remotely-sensed data shows a close alignment of spatial scaling behavior with landform down to the mountain fold scale, that is the ridge-valley. Likewise, we find that diurnal and seasonal cycles are organized and constrained by topography from the macro- to the meso- to the alpha-scale of individual basins varying with synoptic weather conditions. At the catchment scale, the diurnal cycle exhibits an oscillatory behavior with storm features moving up and down from the ridge crests to the valley floor and back and forth from head to mouth along the valley with strong variations in rainfall intensity and duration. Direct observations to provide quantitative estimates of precipitation at this scale are beyond the capability of satellite-based observations present and anticipated in the next 10-20 years. This limitation can be addressed by assimilating the space-time modes of variability of rainfall into satellite-observations at coarser scale using multiscale blending algorithms. The challenge is to characterize the modes of space-time variability of precipitation in a systematic, and quantitative fashion that can be generalized. It requires understanding the physical controls that govern the diurnal cycle and how these physical controls translate into spatial and temporal variability of dynamics and microphysics of precipitation in headwater catchments, and especially in the context of extreme events for natural hazards assessments. Toward this goal, we have initiated a sequence of number of intense observing period (IOP) campaigns in the Great Smoky Mountains National Park using radiosondes, tethersondes, microrain radars, and a high resolution raingauge network that for the first time monitors rainfall systematically along ridges in the Appalachians. Along with field observations, a high-resolution coupled model has been implemented to diagnose the evolution of the 4D structure of regional circulations and associated precipitation for IOP conditions and for reconstructing historical extremes associated with the interaction of tropical cyclones with the mountains. A synthesis of data analysis and model simulations will be presented.

Statistical Measures of Large-Scale Structure

NASA Astrophysics Data System (ADS)

Vogeley, Michael; Geller, Margaret; Huchra, John; Park, Changbom; Gott, J. Richard

1993-12-01

\\inv Mpc} To quantify clustering in the large-scale distribution of galaxies and to test theories for the formation of structure in the universe, we apply statistical measures to the CfA Redshift Survey. This survey is complete to m_{B(0)}=15.5 over two contiguous regions which cover one-quarter of the sky and include ~ 11,000 galaxies. The salient features of these data are voids with diameter 30-50\\hmpc and coherent dense structures with a scale ~ 100\\hmpc. Comparison with N-body simulations rules out the ``standard" CDM model (Omega =1, b=1.5, sigma_8 =1) at the 99% confidence level because this model has insufficient power on scales lambda >30\\hmpc. An unbiased open universe CDM model (Omega h =0.2) and a biased CDM model with non-zero cosmological constant (Omega h =0.24, lambda_0 =0.6) match the observed power spectrum. The amplitude of the power spectrum depends on the luminosity of galaxies in the sample; bright (L>L(*) ) galaxies are more strongly clustered than faint galaxies. The paucity of bright galaxies in low-density regions may explain this dependence. To measure the topology of large-scale structure, we compute the genus of isodensity surfaces of the smoothed density field. On scales in the ``non-linear" regime, <= 10\\hmpc, the high- and low-density regions are multiply-connected over a broad range of density threshold, as in a filamentary net. On smoothing scales >10\\hmpc, the topology is consistent with statistics of a Gaussian random field. Simulations of CDM models fail to produce the observed coherence of structure on non-linear scales (>95% confidence level). The underdensity probability (the frequency of regions with density contrast delta rho //lineρ=-0.8) depends strongly on the luminosity of galaxies; underdense regions are significantly more common (>2sigma ) in bright (L>L(*) ) galaxy samples than in samples which include fainter galaxies.

The Personality Assessment Inventory as a Proxy for the Psychopathy Checklist-Revised: Testing the Incremental Validity and Cross-Sample Robustness of the Antisocial Features Scale

ERIC Educational Resources Information Center

Douglas, Kevin S.; Guy, Laura S.; Edens, John F.; Boer, Douglas P.; Hamilton, Jennine

2007-01-01

The Personality Assessment Inventory's (PAI's) ability to predict psychopathic personality features, as assessed by the Psychopathy Checklist-Revised (PCL-R), was examined. To investigate whether the PAI Antisocial Features (ANT) Scale and subscales possessed incremental validity beyond other theoretically relevant PAI scales, optimized regression…

Grayscale transparent metasurface holograms

DOE PAGES

Wang, Lei; Kruk, Sergey; Tang, Hanzhi; ...

2016-12-16

In this paper, we demonstrate transparent metaholograms based on silicon metasurfaces that allow high-resolution grayscale images to be encoded. Finally, the holograms feature the highest diffraction and transmission efficiencies, and operate over a broad spectral range.

Using the Properties of Broad Absorption Line Quasars to Illuminate Quasar Structure

NASA Astrophysics Data System (ADS)

Yong, Suk Yee; King, Anthea L.; Webster, Rachel L.; Bate, Nicholas F.; O'Dowd, Matthew J.; Labrie, Kathleen

2018-06-01

A key to understanding quasar unification paradigms is the emission properties of broad absorption line quasars (BALQs). The fact that only a small fraction of quasar spectra exhibit deep absorption troughs blueward of the broad permitted emission lines provides a crucial clue to the structure of quasar emitting regions. To learn whether it is possible to discriminate between the BALQ and non-BALQ populations given the observed spectral properties of a quasar, we employ two approaches: one based on statistical methods and the other supervised machine learning classification, applied to quasar samples from the Sloan Digital Sky Survey. The features explored include continuum and emission line properties, in particular the absolute magnitude, redshift, spectral index, line width, asymmetry, strength, and relative velocity offsets of high-ionisation C IV λ1549 and low-ionisation Mg II λ2798 lines. We consider a complete population of quasars, and assume that the statistical distributions of properties represent all angles where the quasar is viewed without obscuration. The distributions of the BALQ and non-BALQ sample properties show few significant differences. None of the observed continuum and emission line features are capable of differentiating between the two samples. Most published narrow disk-wind models are inconsistent with these observations, and an alternative disk-wind model is proposed. The key feature of the proposed model is a disk-wind filling a wide opening angle with multiple radial streams of dense clumps.

Broad Learning System: An Effective and Efficient Incremental Learning System Without the Need for Deep Architecture.

PubMed

Chen, C L Philip; Liu, Zhulin

2018-01-01

Broad Learning System (BLS) that aims to offer an alternative way of learning in deep structure is proposed in this paper. Deep structure and learning suffer from a time-consuming training process because of a large number of connecting parameters in filters and layers. Moreover, it encounters a complete retraining process if the structure is not sufficient to model the system. The BLS is established in the form of a flat network, where the original inputs are transferred and placed as "mapped features" in feature nodes and the structure is expanded in wide sense in the "enhancement nodes." The incremental learning algorithms are developed for fast remodeling in broad expansion without a retraining process if the network deems to be expanded. Two incremental learning algorithms are given for both the increment of the feature nodes (or filters in deep structure) and the increment of the enhancement nodes. The designed model and algorithms are very versatile for selecting a model rapidly. In addition, another incremental learning is developed for a system that has been modeled encounters a new incoming input. Specifically, the system can be remodeled in an incremental way without the entire retraining from the beginning. Satisfactory result for model reduction using singular value decomposition is conducted to simplify the final structure. Compared with existing deep neural networks, experimental results on the Modified National Institute of Standards and Technology database and NYU NORB object recognition dataset benchmark data demonstrate the effectiveness of the proposed BLS.

Distinctive Feature Extraction for Indian Sign Language (ISL) Gesture using Scale Invariant Feature Transform (SIFT)

NASA Astrophysics Data System (ADS)

Patil, Sandeep Baburao; Sinha, G. R.

2017-02-01

India, having less awareness towards the deaf and dumb peoples leads to increase the communication gap between deaf and hard hearing community. Sign language is commonly developed for deaf and hard hearing peoples to convey their message by generating the different sign pattern. The scale invariant feature transform was introduced by David Lowe to perform reliable matching between different images of the same object. This paper implements the various phases of scale invariant feature transform to extract the distinctive features from Indian sign language gestures. The experimental result shows the time constraint for each phase and the number of features extracted for 26 ISL gestures.

Scaling laws for coastal overwash morphology

NASA Astrophysics Data System (ADS)

Lazarus, Eli D.

2016-12-01

Overwash is a physical process of coastal sediment transport driven by storm events and is essential to landscape resilience in low-lying barrier environments. This work establishes a comprehensive set of scaling laws for overwash morphology: unifying quantitative descriptions with which to compare overwash features by their morphological attributes across case examples. Such scaling laws also help relate overwash features to other morphodynamic phenomena. Here morphometric data from a physical experiment are compared with data from natural examples of overwash features. The resulting scaling relationships indicate scale invariance spanning several orders of magnitude. Furthermore, these new relationships for overwash morphology align with classic scaling laws for fluvial drainages and alluvial fans.

A scale-entropy diffusion equation to describe the multi-scale features of turbulent flames near a wall

NASA Astrophysics Data System (ADS)

Queiros-Conde, D.; Foucher, F.; Mounaïm-Rousselle, C.; Kassem, H.; Feidt, M.

2008-12-01

Multi-scale features of turbulent flames near a wall display two kinds of scale-dependent fractal features. In scale-space, an unique fractal dimension cannot be defined and the fractal dimension of the front is scale-dependent. Moreover, when the front approaches the wall, this dependency changes: fractal dimension also depends on the wall-distance. Our aim here is to propose a general geometrical framework that provides the possibility to integrate these two cases, in order to describe the multi-scale structure of turbulent flames interacting with a wall. Based on the scale-entropy quantity, which is simply linked to the roughness of the front, we thus introduce a general scale-entropy diffusion equation. We define the notion of “scale-evolutivity” which characterises the deviation of a multi-scale system from the pure fractal behaviour. The specific case of a constant “scale-evolutivity” over the scale-range is studied. In this case, called “parabolic scaling”, the fractal dimension is a linear function of the logarithm of scale. The case of a constant scale-evolutivity in the wall-distance space implies that the fractal dimension depends linearly on the logarithm of the wall-distance. We then verified experimentally, that parabolic scaling represents a good approximation of the real multi-scale features of turbulent flames near a wall.

Automatic EMC test system

NASA Astrophysics Data System (ADS)

Kasai, R.; Abe, T.; Sano, T.

Automated electromagnetic compatibility (EMC) tests for spacecraft hardware are described. EMC tests are divided into three categories: compensating measurement and calibration errors, comparison of test results with specification, and fine-frequency searching using predictive interference analysis. The automated system features an RF receiver and transmitter, a control system, and antennas. Trials are run with conducted and radiated emissions and conducted and radiated susceptibility over a frequency range of 0.1-40 GHz with narrow, broad and random broad band noise. The system meets military specifications 1541, 461, and 462.

An Overview of Addiction Research Center Inventory Scales (ARCI): An Appendix and Manual of Scales.

ERIC Educational Resources Information Center

Haertzen, C.A.

The Addiction Research Center Inventory is a 550 item multipurpose test measuring the broad range of physical, emotive, cognitive, and subjective effects of drugs. This manual provides technical information concerning 38 most valid scales, a quantitative method for characterizing the similarity of a profile of scores for the subject, group, or…

Systematic temporal patterns in the relationship between housing development and forest bird biodiversity

Treesearch

Anna M. Pidgeon; Curtis H. Flather; Volker C. Radeloff; Christopher A. Lepczyk; Nicholas S. Keuler; Eric M. Wood; Susan I. Stewart; Roger B. Hammer

2014-01-01

As people encroach increasingly on natural areas, one question is how this affects avian biodiversity. The answer to this is partly scale-dependent. At broad scales, human populations and biodiversity concentrate in the same areas and are positively associated, but at local scales people and biodiversity are negatively associated with biodiversity. We investigated...

Broad and Narrow CHC Abilities Measured and Not Measured by the Wechsler Scales: Moving beyond Within-Battery Factor Analysis

ERIC Educational Resources Information Center

Flanagan, Dawn P.; Alfonso, Vincent C.; Reynolds, Matthew R.

2013-01-01

In this commentary, we reviewed two clinical validation studies on the Wechsler Scales conducted by Weiss and colleagues. These researchers used a rigorous within-battery model-fitting approach that demonstrated the factorial invariance of the Wechsler Intelligence Scale for Children-Fourth Edition (WISC-IV) and Wechsler Adult Intelligence…

Lens-Aided Multi-Angle Spectroscopy (LAMAS) Reveals Small-Scale Outflow Structure in Quasars

NASA Astrophysics Data System (ADS)

Green, Paul J.

2006-06-01

Spectral differences between lensed quasar image components are common. Since lensing is intrinsically achromatic, these differences are typically explained as the effect of either microlensing, or as light path time delays sampling intrinsic quasar spectral variability. Here we advance a novel third hypothesis: some spectral differences are due to small line-of-sight differences through quasar disk wind outflows. In particular, we propose that variable spectral differences seen only in component A of the widest separation lens SDSS J1004+4112 are due to differential absorption along the sight lines. The absorber properties required by this hypothesis are akin to known broad absorption line (BAL) outflows but must have a broader, smoother velocity profile. We interpret the observed C IV emission-line variability as further evidence for spatial fine structure transverse to the line of sight. Since outflows are likely to be rotating, such absorber fine structure can consistently explain some of the UV and X-ray variability seen in AGNs. The implications are many: (1) Spectroscopic differences in other lensed objects may be due to this ``lens-aided multi-angle spectroscopy'' (LAMAS). (2) Outflows have fine structure on size scales of arcseconds, as seen from the nucleus. (3) Assuming either broad absorption line region sizes proposed in recent wind models, or typically assumed continuum emission region sizes, LAMAS and/or variability provide broadly consistent absorber size scale estimates of ~1015 cm. (4) Very broad smooth absorption may be ubiquitous in quasar spectra, even when no obvious troughs are seen.

Defining key features of the broad autism phenotype: a comparison across parents of multiple- and single-incidence autism families.

PubMed

Losh, Molly; Childress, Debra; Lam, Kristen; Piven, Joseph

2008-06-05

This study examined the frequency of personality, language, and social-behavioral characteristics believed to comprise the broad autism phenotype (BAP), across families differing in genetic liability to autism. We hypothesized that within this unique sample comprised of multiple-incidence autism families (MIAF), single-incidence autism families (SIAF), and control Down syndrome families (DWNS), a graded expression would be observed for the principal characteristics conferring genetic susceptibility to autism, in which such features would express most profoundly among parents from MIAFs, less strongly among SIAFs, and least of all among comparison parents from DWNS families, who should display population base rates. Analyses detected linear expression of traits in line with hypotheses, and further suggested differential intrafamilial expression across family types. In the vast majority of MIAFs both parents displayed BAP characteristics, whereas within SIAFs, it was equally likely that one, both, or neither parent show BAP features. The significance of these findings is discussed in relation to etiologic mechanisms in autism and relevance to molecular genetic studies. (c) 2007 Wiley-Liss, Inc.

Cavity detection and delineation research. Part 4: Microgravimetric survey: Manatee Springs Site, Florida

NASA Astrophysics Data System (ADS)

Butler, D. K.; Whitten, C. B.; Smith, F. L.

1983-03-01

Results of a microgravimetric survey at Manatee Springs, Levy County, Fla., are presented. The survey area was 100 by 400 ft, with 20-ft gravity station spacing, and with the long dimension of the area approximately perpendicular to the known trend of the main cavity. The main cavity is about 80 to 100 ft below the surface and has a cross section about 16 to 20 ft in height and 30 to 40 ft in width beneath the survey area. Using a density contrast of -1.3 g/cucm, the gravity anomaly is calculated to be -35 micro Gal with a width at half maximum of 205 ft. The microgravimetric survey results clearly indicate a broad negative anomaly coincident with the location and trend of the cavity system across the survey area. The anomaly magnitude and width are consistent with those calculated from the known depth and dimensions of the main cavity. In addition, a small, closed negative anomaly feature, superimposed on the broad negative feature due to the main cavity, satisfactorily delineated a small secondary cavity feature which was discovered and mapped by cave divers.

Mosaic Trisomy 9p in a Patient with Mild Dysmorphic Features and Normal Intelligence.

PubMed

Brar, Randeep; Basel, Donald G; Bick, David P; Weik, LuAnn; vanTuinen, Peter; Peterson, Jess F

2017-01-01

To the Editor: Partial and whole duplications of the short arm of chromosome 9 have been commonly reported in the literature with characteristic phenotypic features and intellectual disabilities. The clinical features of 9p duplications are broad and can include growth retardation, developmental delay, intellectual disability, microbrachycephaly, deep set eyes, hypertelorism, downslanting palpebral fissures, prominent nasal root, bulbous nasal tip, low-set ears, short fingers and toes with hypoplastic nails, and delayed bone age (Bonaglia et al., 2002; Zou et al., 2009; Guilherme et al., 2014).

Experimental Observation of Two Features Unexpected from the Classical Theories of Rubber Elasticity

NASA Astrophysics Data System (ADS)

Nishi, Kengo; Fujii, Kenta; Chung, Ung-il; Shibayama, Mitsuhiro; Sakai, Takamasa

2017-12-01

Although the elastic modulus of a Gaussian chain network is thought to be successfully described by classical theories of rubber elasticity, such as the affine and phantom models, verification experiments are largely lacking owing to difficulties in precisely controlling of the network structure. We prepared well-defined model polymer networks experimentally, and measured the elastic modulus G for a broad range of polymer concentrations and connectivity probabilities, p . In our experiment, we observed two features that were distinct from those predicted by classical theories. First, we observed the critical behavior G ˜|p -pc|1.95 near the sol-gel transition. This scaling law is different from the prediction of classical theories, but can be explained by analogy between the electric conductivity of resistor networks and the elasticity of polymer networks. Here, pc is the sol-gel transition point. Furthermore, we found that the experimental G -p relations in the region above C* did not follow the affine or phantom theories. Instead, all the G /G0-p curves fell onto a single master curve when G was normalized by the elastic modulus at p =1 , G0. We show that the effective medium approximation for Gaussian chain networks explains this master curve.

Large-Aperture Wide-Bandwidth Anti-Reflection-Coated Silicon Lenses for Millimeter Wavelengths

NASA Technical Reports Server (NTRS)

Datta, R.; Munson, C. D.; Niemack, M. D.; McMahon, J. J.; Britton, J.; Wollack, E. J.; Beall, J.; Devlin, M. J.; Fowler, J.; Gallardo, P.;

Large-aperture Wide-bandwidth Antireflection-coated Silicon Lenses for Millimeter Wavelengths

NASA Technical Reports Server (NTRS)

Datta, R.; Munson, C. D.; Niemack, M. D.; McMahon, J. J.; Britton, J.; Wollack, Edward J.; Beall, J.; Devlin, M. J.; Fowler, J.; Gallardo, P.;

Volcano morphometry and volume scaling on Venus

NASA Technical Reports Server (NTRS)

Garvin, J. B.; Williams, R. S., Jr.

1994-01-01

A broad variety of volcanic edifices have been observed on Venus. They ranged in size from the limits of resolution of the Magellan SAR (i.e., hundreds of meters) to landforms over 500 km in basal diameter. One of the key questions pertaining to volcanism on Venus concerns the volume eruption rate or VER, which is linked to crustal productivity over time. While less than 3 percent of the surface area of Venus is manifested as discrete edifices larger than 50 km in diameter, a substantial component of the total crustal volume of the planet over the past 0.5 Ga is related to isolated volcanoes, which are certainly more easily studied than the relatively diffusely defined plains volcanic flow units. Thus, we have focused our efforts on constraining the volume productivity of major volcanic edifices larger than 100 km in basal diameter. Our approach takes advantage of the topographic data returned by Magellan, as well as our database of morphometric statistics for the 20 best known lava shields of Iceland, plus Mauna Loa of Hawaii. As part of this investigation, we have quantified the detailed morphometry of nearly 50 intermediate to large scale edifices, with particular attention to their shape systematics. We found that a set of venusian edifices which include Maat, Sapas, Tepev, Sif, Gula, a feature at 46 deg S, 215 deg E, as well as the shield-like structure at 10 deg N, 275 deg E are broadly representative of the approx. 400 volcanic landforms larger than 50 km. The cross-sectional shapes of these 7 representative edifices range from flattened cones (i.e., Sif) similar to classic terrestrial lava shields such as Mauna Loa and Skjaldbreidur, to rather dome-like structures which include Maat and Sapas. The majority of these larger volcanoes surveyed as part of our study displayed cross-sectional topographies with paraboloidal shaped, in sharp contrast with the cone-like appearance of most simple terrestrial lava shields. In order to more fully explore the differences between large venusian edifices and volcanoes on the Earth and Mars, we developed a volume scaling algorithm which relies on conservation of volcano morphometry as basal diameter is varied.

Spatial variation in the climatic predictors of species compositional turnover and endemism.

PubMed

Di Virgilio, Giovanni; Laffan, Shawn W; Ebach, Malte C; Chapple, David G

2014-08-01

Previous research focusing on broad-scale or geographically invariant species-environment dependencies suggest that temperature-related variables explain more of the variation in reptile distributions than precipitation. However, species-environment relationships may exhibit considerable spatial variation contingent upon the geographic nuances that vary between locations. Broad-scale, geographically invariant analyses may mask this local variation and their findings may not generalize to different locations at local scales. We assess how reptile-climatic relationships change with varying spatial scale, location, and direction. Since the spatial distributions of diversity and endemism hotspots differ for other species groups, we also assess whether reptile species turnover and endemism hotspots are influenced differently by climatic predictors. Using New Zealand reptiles as an example, the variation in species turnover, endemism and turnover in climatic variables was measured using directional moving window analyses, rotated through 360°. Correlations between the species turnover, endemism and climatic turnover results generated by each rotation of the moving window were analysed using multivariate generalized linear models applied at national, regional, and local scales. At national-scale, temperature turnover consistently exhibited the greatest influence on species turnover and endemism, but model predictive capacity was low (typically r (2) = 0.05, P < 0.001). At regional scales the relative influence of temperature and precipitation turnover varied between regions, although model predictive capacity was also generally low. Climatic turnover was considerably more predictive of species turnover and endemism at local scales (e.g., r (2) = 0.65, P < 0.001). While temperature turnover had the greatest effect in one locale (the northern North Island), there was substantial variation in the relative influence of temperature and precipitation predictors in the remaining four locales. Species turnover and endemism hotspots often occurred in different locations. Climatic predictors had a smaller influence on endemism. Our results caution against assuming that variability in temperature will always be most predictive of reptile biodiversity across different spatial scales, locations and directions. The influence of climatic turnover on the species turnover and endemism of other taxa may exhibit similar patterns of spatial variation. Such intricate variation might be discerned more readily if studies at broad scales are complemented by geographically variant, local-scale analyses.

Large-Scale Environmental Influences on Aquatic Animal Health

EPA Science Inventory

In the latter portion of the 20th century, North America experienced numerous large-scale mortality events affecting a broad diversity of aquatic animals. Short-term forensic investigations of these events have sometimes characterized a causative agent or condition, but have rare...

Fine-Scale Habitat Heterogeneity Influences Occupancy in Terrestrial Mammals in a Temperate Region of Australia

PubMed Central

Stirnemann, Ingrid; Mortelliti, Alessio; Gibbons, Philip; Lindenmayer, David B.

2015-01-01

Vegetation heterogeneity is an inherent feature of most ecosystems, characterises the structure of habitat, and is considered an important driver of species distribution patterns. However, quantifying fine-scale heterogeneity of vegetation cover can be time consuming, and therefore it is seldom measured. Here, we determine if heterogeneity is worthwhile measuring, in addition to the amount of cover, when examining species distribution patterns. Further, we investigated the effect of the surrounding landscape heterogeneity on species occupancy. We tested the effect of cover and heterogeneity of trees and shrubs, and the context of the surrounding landscape (number of habitats and distance to an ecotone) on site occupancy of three mammal species (the black wallaby [Wallabia bicolor], the long-nosed bandicoot [Perameles nasuta], and the bush rat [Rattus fuscipes]) within a naturally heterogeneous landscape in a temperate region of Australia. We found that fine-scale heterogeneity of vegetation attributes is an important driver of mammal occurrence of two of these species. Further, we found that, although all three species responded positively to vegetation heterogeneity, different mammals vary in their response to different types of vegetation heterogeneity measurement. For example, the black wallaby responded to the proximity of an ecotone, and the bush rat and the long-nosed bandicoot responded to fine-scale heterogeneity of small tree cover, whereas none of the mammals responded to broad scale heterogeneity (i.e., the number of habitat types). Our results highlight the influence of methodological decisions, such as how heterogeneity vegetation is measured, in quantifying species responses to habitat structures. The findings confirm the importance of choosing meaningful heterogeneity measures when modelling the factors influencing occupancy of the species of interest. PMID:26394327

WISE J233237.05-505643.5: A Double-Peaked Broad-Lined AGN with Spiral-Shaped Radio Morphology

NASA Technical Reports Server (NTRS)

Tsai, Chao Wei; Jarrett, Thomas H.; Stern, Daniel; Emonts, Bjorn; Barrows, R. Scott; Assef, Roberto J.; Norris, Ray P.; Eisenhardt, Peter R. M.; Lonsdale, Carol; Blain, Andrew W.;

75 years of dryland science: Trends and gaps in arid ecology literature

PubMed Central

Dickman, Chris R.; Wardle, Glenda M.

2017-01-01

Growth in the publication of scientific articles is occurring at an exponential rate, prompting a growing need to synthesise information in a timely manner to combat urgent environmental problems and guide future research. Here, we undertake a topic analysis of dryland literature over the last 75 years (8218 articles) to identify areas in arid ecology that are well studied and topics that are emerging. Four topics—wetlands, mammal ecology, litter decomposition and spatial modelling, were identified as ‘hot topics’ that showed higher than average growth in publications from 1940 to 2015. Five topics—remote sensing, climate, habitat and spatial, agriculture and soils-microbes, were identified as ‘cold topics’, with lower than average growth over the survey period, but higher than average numbers of publications. Topics in arid ecology clustered into seven broad groups on word-based similarity. These groups ranged from mammal ecology and population genetics, broad-scale management and ecosystem modelling, plant ecology, agriculture and ecophysiology, to populations and paleoclimate. These patterns may reflect trends in the field of ecology more broadly. We also identified two broad research gaps in arid ecology: population genetics, and habitat and spatial research. Collaborations between population genetics and ecologists and investigations of ecological processes across spatial scales would contribute profitably to the advancement of arid ecology and to ecology more broadly. PMID:28384186

NuSTAR reveals the Comptonizing corona of the broad-line radio galaxy 3C 382

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ballantyne, D. R.; Bollenbacher, J. M.; Brenneman, L. W.

Broad-line radio galaxies (BLRGs) are active galactic nuclei that produce powerful, large-scale radio jets, but appear as Seyfert 1 galaxies in their optical spectra. In the X-ray band, BLRGs also appear like Seyfert galaxies, but with flatter spectra and weaker reflection features. One explanation for these properties is that the X-ray continuum is diluted by emission from the jet. Here, we present two NuSTAR observations of the BLRG 3C 382 that show clear evidence that the continuum of this source is dominated by thermal Comptonization, as in Seyfert 1 galaxies. The two observations were separated by over a year andmore » found 3C 382 in different states separated by a factor of 1.7 in flux. The lower flux spectrum has a photon-index of Γ=1.68{sub −0.02}{sup +0.03}, while the photon-index of the higher flux spectrum is Γ=1.78{sub −0.03}{sup +0.02}. Thermal and anisotropic Comptonization models provide an excellent fit to both spectra and show that the coronal plasma cooled from kT{sub e} = 330 ± 30 keV in the low flux data to 231{sub −88}{sup +50} keV in the high flux observation. This cooling behavior is typical of Comptonizing corona in Seyfert galaxies and is distinct from the variations observed in jet-dominated sources. In the high flux observation, simultaneous Swift data are leveraged to obtain a broadband spectral energy distribution and indicates that the corona intercepts ∼10% of the optical and ultraviolet emitting accretion disk. 3C 382 exhibits very weak reflection features, with no detectable relativistic Fe Kα line, that may be best explained by an outflowing corona combined with an ionized inner accretion disk.« less

Outreach on a National Scale: The Critical Role of Facilities

NASA Astrophysics Data System (ADS)

Bartel, B. A.; Charlevoix, D. J.

2015-12-01

Facilities provide infrastructure for science that would not be feasible at a single institution. Facilities are also a resource for development of outreach products and activities that reach a national audience of diverse stakeholders. UNAVCO manages the NSF geodetic facility GAGE (Geodesy Advancing Geosciences and Earthscope). Staff at UNAVCO with expertise in education, outreach, and communication translate the science and supporting infrastructure into materials consumable by a wide array of users including teachers, students, museum attendees, emergency managers, park interpreters, and members of the general public. UNAVCO has the ability to distribute materials to a national and international audience, thereby greatly increasing the impact of the science and increasing the value of the investment by the National Science Foundation. In 2014 and 2015, UNAVCO produced multiple print products focused on the Plate Boundary Observatory (PBO), the geodetic component of EarthScope. Products include a deck of playing cards featuring PBO GPS stations, a poster featuring GPS velocities of the Western United States, and another poster focused on GPS velocities in Alaska. We are distributing these products to a broad audience, including teachers, station permit holders, and community members. The Tectonics of the Western United States poster was distributed this year in the American Geosciences Institute Earth Science Week kit for teachers, reaching 16,000 educators around the country. These posters and the PBO playing cards (PBO-52) were distributed to more than 100 teachers through workshops led by UNAVCO, the EarthScope National Office, the Southern California Earthquake Center (SCEC), and more. Additionally, these cards serve as a way to engage landowners who host these scientific stations on their property. This presentation will address the strategies for creating nationally relevant materials and the tools used for dissemination of materials to a broad audience. We will outline the process of our planning strategy as well as share ways in which we evaluate impact of particular outreach products and the overall outreach program.

Man and the Biosphere

ERIC Educational Resources Information Center

Brabyn, Howard

1974-01-01

Presents the objectives of the MAB program, describes "core" material that makes the program of international value, and reports a feature wherein scientists are being asked to make broad social judgments about the work they are doing. (GS)

The hormesis database: the occurrence of hormetic dose responses in the toxicological literature.

PubMed

Calabrese, Edward J; Blain, Robyn B

2011-10-01

In 2005 we published an assessment of dose responses that satisfied a priori evaluative criteria for inclusion within the relational retrieval hormesis database (Calabrese and Blain, 2005). The database included information on study characteristics (e.g., biological model, gender, age and other relevant aspects, number of doses, dose distribution/range, quantitative features of the dose response, temporal features/repeat measures, and physical/chemical properties of the agents). The 2005 article covered information for about 5000 dose responses; the present article has been expanded to cover approximately 9000 dose responses. This assessment extends and strengthens the conclusion of the 2005 paper that the hormesis concept is broadly generalizable, being independent of biological model, endpoint measured and chemical class/physical agent. It also confirmed the definable quantitative features of hormetic dose responses in which the strong majority of dose responses display maximum stimulation less than twice that of the control group and a stimulatory width that is within approximately 10-20-fold of the estimated toxicological or pharmacological threshold. The remarkable consistency of the quantitative features of the hormetic dose response suggests that hormesis may provide an estimate of biological plasticity that is broadly generalized across plant, microbial and animal (invertebrate and vertebrate) models. Copyright © 2011 Elsevier Inc. All rights reserved.

Computational Psychotherapy Research: Scaling up the evaluation of patient-provider interactions

PubMed Central

Imel, Zac E.; Steyvers, Mark; Atkins, David C.

2014-01-01

In psychotherapy, the patient-provider interaction contains the treatment’s active ingredients. However, the technology for analyzing the content of this interaction has not fundamentally changed in decades, limiting both the scale and specificity of psychotherapy research. New methods are required in order to “scale up” to larger evaluation tasks and “drill down” into the raw linguistic data of patient-therapist interactions. In the current paper we demonstrate the utility of statistical text analysis models called topic models for discovering the underlying linguistic structure in psychotherapy. Topic models identify semantic themes (or topics) in a collection of documents (here, transcripts). We used topic models to summarize and visualize 1,553 psychotherapy and drug therapy (i.e., medication management) transcripts. Results showed that topic models identified clinically relevant content, including affective, content, and intervention related topics. In addition, topic models learned to identify specific types of therapist statements associated with treatment related codes (e.g., different treatment approaches, patient-therapist discussions about the therapeutic relationship). Visualizations of semantic similarity across sessions indicate that topic models identify content that discriminates between broad classes of therapy (e.g., cognitive behavioral therapy vs. psychodynamic therapy). Finally, predictive modeling demonstrated that topic model derived features can classify therapy type with a high degree of accuracy. Computational psychotherapy research has the potential to scale up the study of psychotherapy to thousands of sessions at a time, and we conclude by discussing the implications of computational methods such as topic models for the future of psychotherapy research and practice. PMID:24866972

Moss and lichen cover mapping at local and regional scales in the boreal forest ecosystem of central Canada

USGS Publications Warehouse

Rapalee, G.; Steyaert, L.T.; Hall, F.G.

2001-01-01

Mosses and lichens are important components of boreal landscapes [Vitt et al., 1994; Bubier et al., 1997]. They affect plant productivity and belowground carbon sequestration and alter the surface runoff and energy balance. We report the use of multiresolution satellite data to map moss and lichens over the BOREAS region at a 10 m, 30 m, and 1 km scales. Our moss and lichen classification at the 10 m scale is based on ground observations of associations among soil drainage classes, overstory composition, and cover type among four broad classes of ground cover (feather, sphagnum, and brown mosses and lichens). For our 30 m map, we used field observations of ground cover-overstory associations to map mosses and lichens in the BOREAS southern study area (SSA). To scale up to a 1 km (AVHRR) moss map of the BOREAS region, we used the TM SSA mosaics plus regional field data to identify AVHRR overstory-ground cover associations. We found that: 1) ground cover, overstory composition and density are highly correlated, permitting inference of moss and lichen cover from satellite-based land cover classifications; 2) our 1 km moss map reveals that mosses dominate the boreal landscape of central Canada, thereby a significant factor for water, energy, and carbon modeling; 3) TM and AVHRR moss cover maps are comparable; 4) satellite data resolution is important; particularly in detecting the smaller wetland features, lakes, and upland jack pine sites; and 5) distinct regional patterns of moss and lichen cover correspond to latitudinal and elevational gradients. Copyright 2001 by the American Geophysical Union.

Computational psychotherapy research: scaling up the evaluation of patient-provider interactions.

PubMed

Imel, Zac E; Steyvers, Mark; Atkins, David C

2015-03-01

In psychotherapy, the patient-provider interaction contains the treatment's active ingredients. However, the technology for analyzing the content of this interaction has not fundamentally changed in decades, limiting both the scale and specificity of psychotherapy research. New methods are required to "scale up" to larger evaluation tasks and "drill down" into the raw linguistic data of patient-therapist interactions. In the current article, we demonstrate the utility of statistical text analysis models called topic models for discovering the underlying linguistic structure in psychotherapy. Topic models identify semantic themes (or topics) in a collection of documents (here, transcripts). We used topic models to summarize and visualize 1,553 psychotherapy and drug therapy (i.e., medication management) transcripts. Results showed that topic models identified clinically relevant content, including affective, relational, and intervention related topics. In addition, topic models learned to identify specific types of therapist statements associated with treatment-related codes (e.g., different treatment approaches, patient-therapist discussions about the therapeutic relationship). Visualizations of semantic similarity across sessions indicate that topic models identify content that discriminates between broad classes of therapy (e.g., cognitive-behavioral therapy vs. psychodynamic therapy). Finally, predictive modeling demonstrated that topic model-derived features can classify therapy type with a high degree of accuracy. Computational psychotherapy research has the potential to scale up the study of psychotherapy to thousands of sessions at a time. We conclude by discussing the implications of computational methods such as topic models for the future of psychotherapy research and practice. (PsycINFO Database Record (c) 2015 APA, all rights reserved).

Grains of connectivity: analysis at multiple spatial scales in landscape genetics.

PubMed

Galpern, Paul; Manseau, Micheline; Wilson, Paul

2012-08-01

Landscape genetic analyses are typically conducted at one spatial scale. Considering multiple scales may be essential for identifying landscape features influencing gene flow. We examined landscape connectivity for woodland caribou (Rangifer tarandus caribou) at multiple spatial scales using a new approach based on landscape graphs that creates a Voronoi tessellation of the landscape. To illustrate the potential of the method, we generated five resistance surfaces to explain how landscape pattern may influence gene flow across the range of this population. We tested each resistance surface using a raster at the spatial grain of available landscape data (200 m grid squares). We then used our method to produce up to 127 additional grains for each resistance surface. We applied a causal modelling framework with partial Mantel tests, where evidence of landscape resistance is tested against an alternative hypothesis of isolation-by-distance, and found statistically significant support for landscape resistance to gene flow in 89 of the 507 spatial grains examined. We found evidence that major roads as well as the cumulative effects of natural and anthropogenic disturbance may be contributing to the genetic structure. Using only the original grid surface yielded no evidence for landscape resistance to gene flow. Our results show that using multiple spatial grains can reveal landscape influences on genetic structure that may be overlooked with a single grain, and suggest that coarsening the grain of landcover data may be appropriate for highly mobile species. We discuss how grains of connectivity and related analyses have potential landscape genetic applications in a broad range of systems. © 2012 Blackwell Publishing Ltd.

Understanding the Hydromechanical Behavior of a Fault Zone From Transient Surface Tilt and Fluid Pressure Observations at Hourly Time Scales

NASA Astrophysics Data System (ADS)

Schuite, Jonathan; Longuevergne, Laurent; Bour, Olivier; Burbey, Thomas J.; Boudin, Frédérick; Lavenant, Nicolas; Davy, Philippe

2017-12-01

Flow through reservoirs such as fractured media is powered by head gradients which also generate measurable poroelastic deformation of the rock body. The combined analysis of surface deformation and subsurface pressure provides valuable insights of a reservoir's structure and hydromechanical properties, which are of interest for deep-seated CO2 or nuclear waste storage for instance. Among all surveying tools, surface tiltmeters offer the possibility to grasp hydraulically induced deformations over a broad range of time scales with a remarkable precision. Here we investigate the information content of transient surface tilt generated by the pressurization a kilometer scale subvertical fault zone. Our approach involves the combination of field data and results of a fully coupled poromechanical model. The signature of pressure changes in the fault zone due to pumping cycles is clearly recognizable in field tilt data and we aim to explain the peculiar features that appear in (1) tilt time series alone from a set of four instruments and 2) the ratio of tilt over pressure. We evidence that the shape of tilt measurements on both sides of a fault zone is sensitive to its diffusivity and its elastic modulus. The ratio of tilt over pressure predominantly encompasses information about the system's dynamic behavior and extent of the fault zone and allows separating contributions of flow in the different compartments. Hence, tiltmeters are well suited to characterize hydromechanical processes associated with fault zone hydrogeology at short time scales, where spaceborne surveying methods fail to recognize any deformation signal.

The Cladistic Basis for the Phylogenetic Diversity (PD) Measure Links Evolutionary Features to Environmental Gradients and Supports Broad Applications of Microbial Ecology’s “Phylogenetic Beta Diversity” Framework

PubMed Central

Faith, Daniel P.; Lozupone, Catherine A.; Nipperess, David; Knight, Rob

2009-01-01

The PD measure of phylogenetic diversity interprets branch lengths cladistically to make inferences about feature diversity. PD calculations extend conventional species-level ecological indices to the features level. The “phylogenetic beta diversity” framework developed by microbial ecologists calculates PD-dissimilarities between community localities. Interpretation of these PD-dissimilarities at the feature level explains the framework’s success in producing ordinations revealing environmental gradients. An example gradients space using PD-dissimilarities illustrates how evolutionary features form unimodal response patterns to gradients. This features model supports new application of existing species-level methods that are robust to unimodal responses, plus novel applications relating to climate change, commercial products discovery, and community assembly. PMID:20087461

Aeolian Abrasion at the Curiosity Landing Site: Clues to the Role of Wind in Landscape Modification

NASA Astrophysics Data System (ADS)

Bridges, N. T.; Le Mouélic, S.; Hallet, B.; Newman, C. E.; Rice, M. S.; Blaney, D. L.; Calef, F. J.; Herkenhoff, K. E.; Langevin, Y.; Lewis, K. W.; Maurice, S.; Pinet, P. C.; Wiens, R. C.; de Pablo, M.; Renno, N. O.

2013-12-01

The broad scale geomorphology of Gale Crater reflects diverse aeolian processes, from airfall settling that likely deposited much of the upper and some of the lower units of Mt. Sharp, to evidence of extensive wind exhumation and removal of material exterior to the mound, to active dunes on the crater floor. The integrated effect of aeolian sand transport can also be examined on a much smaller scale by the study of ventifacts, rocks that have been abraded by windborne particles. A diversity of ventifacts are found along Curiosity's traverse through the upper 'hummocky' (HY) geomorphic unit and the lower Yellowknife Bay (YKB) sedimentary rocks. The textures are analogous to abrasion features found on Earth and include cm-scale facets, keels, elongated pits, grooves, flutes, and basal sills. High-resolution images from ChemCam's Remote Micro-Imager also show mm-scale lineations. Evidence of differential erosion is common, with HY conglomerates (e.g., Hottah, Link) and the YKB Sheepbed mudstone unit containing distinct wind tails in the lee of resistant pebbles, and bedding features within Rocknest 3, the YKB Shaler sandstone unit, and other layered rocks displaying prominent ridge-groove topography. ChemCam LIBS depth profile data so far show no strong evidence for chemical differences in the elemental composition between abraded and non-abraded surfaces (as determined from qualitative assessment), as might be expected if there were rock coatings or weathering rinds undergoing active abrasion. Preliminary measurements of ventifact texture and wind tail orientations indicate sandblasting in HY and YKB from predominantly southwesterly and northerly directions, respectively. Based on meso-scale models of current winds and REMS results, SW flow is uncommon whereas N winds are frequent. Compositional and textural information from the suite of MSL instruments indicate that HY rocks are dominated by various types of basalt (either as whole rocks or the resistant clasts in conglomerates), whereas YKB are basaltic clastic rocks, with the lower members impregnated with sulfate veins, and were easily drilled. The HY rocks are therefore likely more resistant to abrasion than those of YKB. Combined, these results indicate that ventifacts so far investigated by MSL record two wind regimes, one a long-term integrated record of rare, yet strong winds and the other more reflective of typical conditions.

A multiscale analysis of gene flow for the New England cottontail, an imperiled habitat specialist in a fragmented landscape

PubMed Central

Fenderson, Lindsey E; Kovach, Adrienne I; Litvaitis, John A; O'Brien, Kathleen M; Boland, Kelly M; Jakubas, Walter J

2014-01-01

Landscape features of anthropogenic or natural origin can influence organisms' dispersal patterns and the connectivity of populations. Understanding these relationships is of broad interest in ecology and evolutionary biology and provides key insights for habitat conservation planning at the landscape scale. This knowledge is germane to restoration efforts for the New England cottontail (Sylvilagus transitionalis), an early successional habitat specialist of conservation concern. We evaluated local population structure and measures of genetic diversity of a geographically isolated population of cottontails in the northeastern United States. We also conducted a multiscale landscape genetic analysis, in which we assessed genetic discontinuities relative to the landscape and developed several resistance models to test hypotheses about landscape features that promote or inhibit cottontail dispersal within and across the local populations. Bayesian clustering identified four genetically distinct populations, with very little migration among them, and additional substructure within one of those populations. These populations had private alleles, low genetic diversity, critically low effective population sizes (3.2–36.7), and evidence of recent genetic bottlenecks. Major highways and a river were found to limit cottontail dispersal and to separate populations. The habitat along roadsides, railroad beds, and utility corridors, on the other hand, was found to facilitate cottontail movement among patches. The relative importance of dispersal barriers and facilitators on gene flow varied among populations in relation to landscape composition, demonstrating the complexity and context dependency of factors influencing gene flow and highlighting the importance of replication and scale in landscape genetic studies. Our findings provide information for the design of restoration landscapes for the New England cottontail and also highlight the dual influence of roads, as both barriers and facilitators of dispersal for an early successional habitat specialist in a fragmented landscape. PMID:24963381

A multiscale analysis of gene flow for the New England cottontail, an imperiled habitat specialist in a fragmented landscape.

PubMed

Fenderson, Lindsey E; Kovach, Adrienne I; Litvaitis, John A; O'Brien, Kathleen M; Boland, Kelly M; Jakubas, Walter J

2014-05-01

Landscape features of anthropogenic or natural origin can influence organisms' dispersal patterns and the connectivity of populations. Understanding these relationships is of broad interest in ecology and evolutionary biology and provides key insights for habitat conservation planning at the landscape scale. This knowledge is germane to restoration efforts for the New England cottontail (Sylvilagus transitionalis), an early successional habitat specialist of conservation concern. We evaluated local population structure and measures of genetic diversity of a geographically isolated population of cottontails in the northeastern United States. We also conducted a multiscale landscape genetic analysis, in which we assessed genetic discontinuities relative to the landscape and developed several resistance models to test hypotheses about landscape features that promote or inhibit cottontail dispersal within and across the local populations. Bayesian clustering identified four genetically distinct populations, with very little migration among them, and additional substructure within one of those populations. These populations had private alleles, low genetic diversity, critically low effective population sizes (3.2-36.7), and evidence of recent genetic bottlenecks. Major highways and a river were found to limit cottontail dispersal and to separate populations. The habitat along roadsides, railroad beds, and utility corridors, on the other hand, was found to facilitate cottontail movement among patches. The relative importance of dispersal barriers and facilitators on gene flow varied among populations in relation to landscape composition, demonstrating the complexity and context dependency of factors influencing gene flow and highlighting the importance of replication and scale in landscape genetic studies. Our findings provide information for the design of restoration landscapes for the New England cottontail and also highlight the dual influence of roads, as both barriers and facilitators of dispersal for an early successional habitat specialist in a fragmented landscape.

Genome-Based Taxonomic Classification of Bacteroidetes

DOE PAGES

Hahnke, Richard L.; Meier-Kolthoff, Jan P.; García-López, Marina; ...

2016-12-20

The bacterial phylum Bacteroidetes, characterized by a distinct gliding motility, occurs in a broad variety of ecosystems, habitats, life styles, and physiologies. Accordingly, taxonomic classification of the phylum, based on a limited number of features, proved difficult and controversial in the past, for example, when decisions were based on unresolved phylogenetic trees of the 16S rRNA gene sequence. Here we use a large collection of type-strain genomes from Bacteroidetes and closely related phyla for assessing their taxonomy based on the principles of phylogenetic classification and trees inferred from genome-scale data. No significant conflict between 16S rRNA gene and whole-genome phylogeneticmore » analysis is found, whereas many but not all of the involved taxa are supported as monophyletic groups, particularly in the genome-scale trees. Phenotypic and phylogenomic features support the separation of Balneolaceae as new phylum Balneolaeota from Rhodothermaeota and of Saprospiraceae as new class Saprospiria from Chitinophagia. Epilithonimonas is nested within the older genus Chryseobacterium and without significant phenotypic differences; thus merging the two genera is proposed. Similarly, Vitellibacter is proposed to be included in Aequorivita. Flexibacter is confirmed as being heterogeneous and dissected, yielding six distinct genera. Hallella seregens is a later heterotypic synonym of Prevotella dentalis. Compared to values directly calculated from genome sequences, the G+C content mentioned in many species descriptions is too imprecise; moreover, corrected G+C content values have a significantly better fit to the phylogeny. Corresponding emendations of species descriptions are provided where necessary. Whereas most observed conflict with the current classification of Bacteroidetes is already visible in 16S rRNA gene trees, as expected whole-genome phylogenies are much better resolved.« less

Genome-Based Taxonomic Classification of Bacteroidetes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hahnke, Richard L.; Meier-Kolthoff, Jan P.; García-López, Marina

The bacterial phylum Bacteroidetes, characterized by a distinct gliding motility, occurs in a broad variety of ecosystems, habitats, life styles, and physiologies. Accordingly, taxonomic classification of the phylum, based on a limited number of features, proved difficult and controversial in the past, for example, when decisions were based on unresolved phylogenetic trees of the 16S rRNA gene sequence. Here we use a large collection of type-strain genomes from Bacteroidetes and closely related phyla for assessing their taxonomy based on the principles of phylogenetic classification and trees inferred from genome-scale data. No significant conflict between 16S rRNA gene and whole-genome phylogeneticmore » analysis is found, whereas many but not all of the involved taxa are supported as monophyletic groups, particularly in the genome-scale trees. Phenotypic and phylogenomic features support the separation of Balneolaceae as new phylum Balneolaeota from Rhodothermaeota and of Saprospiraceae as new class Saprospiria from Chitinophagia. Epilithonimonas is nested within the older genus Chryseobacterium and without significant phenotypic differences; thus merging the two genera is proposed. Similarly, Vitellibacter is proposed to be included in Aequorivita. Flexibacter is confirmed as being heterogeneous and dissected, yielding six distinct genera. Hallella seregens is a later heterotypic synonym of Prevotella dentalis. Compared to values directly calculated from genome sequences, the G+C content mentioned in many species descriptions is too imprecise; moreover, corrected G+C content values have a significantly better fit to the phylogeny. Corresponding emendations of species descriptions are provided where necessary. Whereas most observed conflict with the current classification of Bacteroidetes is already visible in 16S rRNA gene trees, as expected whole-genome phylogenies are much better resolved.« less

Genome-Based Taxonomic Classification of Bacteroidetes

PubMed Central

Hahnke, Richard L.; Meier-Kolthoff, Jan P.; García-López, Marina; Mukherjee, Supratim; Huntemann, Marcel; Ivanova, Natalia N.; Woyke, Tanja; Kyrpides, Nikos C.; Klenk, Hans-Peter; Göker, Markus

2016-01-01

The bacterial phylum Bacteroidetes, characterized by a distinct gliding motility, occurs in a broad variety of ecosystems, habitats, life styles, and physiologies. Accordingly, taxonomic classification of the phylum, based on a limited number of features, proved difficult and controversial in the past, for example, when decisions were based on unresolved phylogenetic trees of the 16S rRNA gene sequence. Here we use a large collection of type-strain genomes from Bacteroidetes and closely related phyla for assessing their taxonomy based on the principles of phylogenetic classification and trees inferred from genome-scale data. No significant conflict between 16S rRNA gene and whole-genome phylogenetic analysis is found, whereas many but not all of the involved taxa are supported as monophyletic groups, particularly in the genome-scale trees. Phenotypic and phylogenomic features support the separation of Balneolaceae as new phylum Balneolaeota from Rhodothermaeota and of Saprospiraceae as new class Saprospiria from Chitinophagia. Epilithonimonas is nested within the older genus Chryseobacterium and without significant phenotypic differences; thus merging the two genera is proposed. Similarly, Vitellibacter is proposed to be included in Aequorivita. Flexibacter is confirmed as being heterogeneous and dissected, yielding six distinct genera. Hallella seregens is a later heterotypic synonym of Prevotella dentalis. Compared to values directly calculated from genome sequences, the G+C content mentioned in many species descriptions is too imprecise; moreover, corrected G+C content values have a significantly better fit to the phylogeny. Corresponding emendations of species descriptions are provided where necessary. Whereas most observed conflict with the current classification of Bacteroidetes is already visible in 16S rRNA gene trees, as expected whole-genome phylogenies are much better resolved. PMID:28066339

Multiple mantle upwellings in the transition zone beneath the northern East-African Rift system from relative P-wave travel-time tomography

NASA Astrophysics Data System (ADS)

Civiero, Chiara; Hammond, James O. S.; Goes, Saskia; Fishwick, Stewart; Ahmed, Abdulhakim; Ayele, Atalay; Doubre, Cecile; Goitom, Berhe; Keir, Derek; Kendall, J.-Michael; Leroy, Sylvie; Ogubazghi, Ghebrebrhan; Rümpker, Georg; Stuart, Graham W.

2015-09-01

Mantle plumes and consequent plate extension have been invoked as the likely cause of East African Rift volcanism. However, the nature of mantle upwelling is debated, with proposed configurations ranging from a single broad plume connected to the large low-shear-velocity province beneath Southern Africa, the so-called African Superplume, to multiple lower-mantle sources along the rift. We present a new P-wave travel-time tomography model below the northern East-African, Red Sea, and Gulf of Aden rifts and surrounding areas. Data are from stations that span an area from Madagascar to Saudi Arabia. The aperture of the integrated data set allows us to image structures of ˜100 km length-scale down to depths of 700-800 km beneath the study region. Our images provide evidence of two clusters of low-velocity structures consisting of features with diameter of 100-200 km that extend through the transition zone, the first beneath Afar and a second just west of the Main Ethiopian Rift, a region with off-rift volcanism. Considering seismic sensitivity to temperature, we interpret these features as upwellings with excess temperatures of 100 ± 50 K. The scale of the upwellings is smaller than expected for lower mantle plume sources. This, together with the change in pattern of the low-velocity anomalies across the base of the transition zone, suggests that ponding or flow of deep-plume material below the transition zone may be spawning these upper mantle upwellings. This article was corrected on 28 SEP 2015. See the end of the full text for details.

Book Review: Large-Scale Ecosystem Restoration: Five Case Studies from the United States

EPA Science Inventory

Broad-scale ecosystem restoration efforts involve a very complex set of ecological and societal components, and the success of any ecosystem restoration project rests on an integrated approach to implementation. Editors Mary Doyle and Cynthia Drew have successfully synthesized ma...

Fracturing and Transformation Into Veins Beneath the Crustal Scale Brittle Ductile Transition - a Record of Co-seismic Loading and Post-seismic Relaxation

NASA Astrophysics Data System (ADS)

Nüchter, J. A.; Stöckhert, B.

2005-12-01

Metamorphic rocks approaching the crustal scale brittle-ductile transition (BDT) during exhumation are expected to become increasingly affected by short term stress fluctuations related to seismic activity in the overlying seismogenic layer (schizosphere), while still residing in a long-term viscous environment (plastosphere). The structural and microstructural record of quartz veins in low grade - high pressure metamorphic rocks from southern Evia, Greece, yields insight into the processes and conditions just beneath the long-term BDT at temperatures of about 300 to 350°C, which switches between brittle failure and viscous flow as a function of imposed stress or strain rate. The following features are characteristic: (1) The veins have formed from tensile fractures, with a typical length on the order of 10-1 to 101 m; (2) The veins are discordant with respect to foliation and all pre-existing structures, with a uniform orientation over more than 500 km2; (3) The veins show a low aspect ratio of about 10 to 100 and an irregular or characteristic flame shape, which requires distributed ductile deformation of the host rock; (4) Fabrics of the sealing vein quartz indicate that - at a time - the veins were wide open cavities; (5) The sealing quartz crystals reveal a broad spectrum of microstructural features indicative of crystal plastic deformation at high stress and temperatures of about 300 to 350°C. These features indicate that opening and sealing of the fractures commenced immediately after brittle failure, controlled by ductile deformation of the host rock. Vein-parallel shortening was generally less than about 2%. Crystals formed early during sealing were plastically deformed upon progressive deformation and opening of the vein. The structural and microstructural record is interpreted as follows: Brittle failure is proposed to be a consequence of short term co-seismic loading. Subsequent opening of the fracture and sealing to become a vein is interpreted to reflect the slower (but still very short term on geological time scales) deformation during post-seismic stress relaxation, with precipitation of minerals from the pore fluid percolating into the evolving cavity. The record provides insight into earthquake-related damage in the uppermost plastosphere and the transient crustal properties during post-seismic creep and stress relaxation.

Designing attractive gamification features for collaborative storytelling websites.

PubMed

Hsu, Shang Hwa; Chang, Jen-Wei; Lee, Chun-Chia

2013-06-01

Gamification design is considered as the predictor of collaborative storytelling websites' success. Although aforementioned studies have mentioned a broad range of factors that may influence gamification, they neither depicted the actual design features nor relative attractiveness among them. This study aims to identify attractive gamification features for collaborative storytelling websites. We first constructed a hierarchical system structure of gamification design of collaborative storytelling websites and conducted a focus group interview with eighteen frequent users to identify 35gamification features. After that, this study determined the relative attractiveness of these gamification features by administrating an online survey to 6333 collaborative storytelling websites users. The results indicated that the top 10 most attractive gamification features could account for more than 50% of attractiveness among these 35 gamification features. The feature of unpredictable time pressure is important to website users, yet not revealed in previous relevant studies. Implications of the findings were discussed.

DNA Barcoding Reveals Hidden Diversity of Sand Flies (Diptera: Psychodidae) at Fine and Broad Spatial Scales in Brazilian Endemic Regions for Leishmaniasis.

PubMed

Rodrigues, Bruno Leite; Carvalho-Costa, Luís Fernando; Pinto, Israel de Souza; Rebêlo, José Manuel Macário

2018-03-17

Sand fly (Diptera: Psychodidae) taxonomy is complex and time-consuming, which hampers epidemiological efforts directed toward controlling leishmaniasis in endemic regions such as northeastern Brazil. Here, we used a fragment of the mitochondrial cytochrome c oxidase I (COI) gene to identify sand fly species in Maranhão State (northeastern Brazil) and to assess cryptic diversity occurring at different spatial scales. For this, we obtained 148 COI sequences of 15 sand fly species (10 genera) from Maranhão (fine spatial scale), and joined them to COI sequences from other Brazilian localities (distant about 2,000 km from Maranhão, broad spatial scale) available in GenBank. We revealed cases of cryptic diversity in sand flies both at fine (Lutzomyia longipalpis (Lutz and Neiva) and Evandromyia termitophila (Martins, Falcão and Silva)) and broad spatial scales (Migonemyia migonei (França), Pressatia choti (Floch and Abonnenc), Psychodopygus davisi (Root), Sciopemyia sordellii (Shannon and Del Ponte), and Bichromomyia flaviscutellata (Mangabeira)). We argue that in the case of Bi. flaviscutellata, the cryptic diversity is associated with a putative new species. Cases in which DNA taxonomy was not as effective as morphological identification possibly involved recent speciation and/or introgressive hybridization, highlighting the need for integrative approaches to identify some sand fly species. Finally, we provide the first barcode sequences for four species (Brumptomyia avellari (Costa Lima), Evandromyia infraspinosa (Mangabeira), Evandromyia evandroi (Costa Lima and Antunes), and Psychodopygus complexus (Mangabeira)), which will be useful for further molecular identification of neotropical species.

Conceptual framework for improved wind-related forest threat assessment in the Southeastern United States

Treesearch

Scott L. Goodrick; John A. Stanturf

2010-01-01

In the Southeastern United States, forests are subject to a variety of damage-causing wind phenomena that range in scale from very localized (downbursts and tornadoes) to broad spatial scales (hurricanes). Incorporating the threat of wind damage into forest management plans requires tools capable of assessing risk across this range of scales. Our conceptual approach...

DNA barcoding at riverscape scales: Assessing biodiversity among fishes of the genus Cottus (Teleostei) in northern Rocky Mountain streams

Treesearch

Michael K. Young; Kevin S. McKelvey; Kristine L. Pilgrim; Michael K. Schwartz

2013-01-01

There is growing interest in broad-scale biodiversity assessments that can serve as benchmarks for identifying ecological change. Genetic tools have been used for such assessments for decades, but spatial sampling considerations have largely been ignored. Here, we demonstrate how intensive sampling efforts across a large geographical scale can influence identification...

An Analysis of Large-Scale Writing Assessments in Canada (Grades 5-8)

ERIC Educational Resources Information Center

Peterson, Shelley Stagg; McClay, Jill; Main, Kristin

2011-01-01

This paper reports on an analysis of large-scale assessments of Grades 5-8 students' writing across 10 provinces and 2 territories in Canada. Theory, classroom practice, and the contributions and constraints of large-scale writing assessment are brought together with a focus on Grades 5-8 writing in order to provide both a broad view of…

Saliency image of feature building for image quality assessment

NASA Astrophysics Data System (ADS)

Ju, Xinuo; Sun, Jiyin; Wang, Peng

2011-11-01

The purpose and method of image quality assessment are quite different for automatic target recognition (ATR) and traditional application. Local invariant feature detectors, mainly including corner detectors, blob detectors and region detectors etc., are widely applied for ATR. A saliency model of feature was proposed to evaluate feasibility of ATR in this paper. The first step consisted of computing the first-order derivatives on horizontal orientation and vertical orientation, and computing DoG maps in different scales respectively. Next, saliency images of feature were built based auto-correlation matrix in different scale. Then, saliency images of feature of different scales amalgamated. Experiment were performed on a large test set, including infrared images and optical images, and the result showed that the salient regions computed by this model were consistent with real feature regions computed by mostly local invariant feature extraction algorithms.

A rare de novo interstitial duplication of 15q15.3q21.2 in a boy with severe short stature, hypogonadism, global developmental delay and intellectual disability.

PubMed

Yuan, Haiming; Meng, Zhe; Zhang, Lina; Luo, Xiangyang; Liu, Liping; Chen, Mengfan; Li, Xinwei; Zhao, Weiwei; Liang, Liyang

2016-01-01

Interstitial duplications distal to 15q13 are very rare. Here, we reported a 14-year-old boy with severe short stature, delayed bone age, hypogonadism, global developmental delay and intellectual disability. His had distinctive facial features including macrocephaly, broad forehead, deep-set and widely spaced eyes, broad nose bridge, shallow philtrum and thick lips. A de novo 6.4 Mb interstitial duplication of 15q15.3q21.2 was detected by chromosomal microarray analysis. We compared our patient's clinical phenotypes with those of several individuals with overlapping duplications and several candidate genes responsible for the phenotypes were identified as well. The results suggest a novel contiguous gene duplication syndrome characterized with shared features including short stature, hypogonadism, global developmental delay and other congenital anomalies.

The evolution of tectonic features on Ganymede

NASA Technical Reports Server (NTRS)

Squyres, S. W.

1982-01-01

The bands of bright resurfaced terrain on Ganymede are probably broad grabens formed by global expansion and filled with deposits of ice. Grooves within the bands are thought to be extensional features formed during the same episode of expansion. The crust of Ganymede is modeled as a viscoelastic material subjected to extensional strain. With sufficiently high strain rates and stresses, deep normal faulting will occur, creating broad grabens that may then be filled. Continuing deformation at high strain rates and stresses will cause propagation of deep faults up into the flood deposits and normal faulting at the surface, while lower strain rates and stresses will cause formation of open extension fractures or, if the crustal strength is very low, grabens at the surface. The spacing between adjacent fractures may reflect the geothermal gradient at the time of deformation. Surface topography resulting from fracturing and normal faulting will decay with time as a result of viscous relaxation and mass-wasting.

Constraints on inflation with LSS surveys: features in the primordial power spectrum

NASA Astrophysics Data System (ADS)

Palma, Gonzalo A.; Sapone, Domenico; Sypsas, Spyros

2018-06-01

We analyse the efficiency of future large scale structure surveys to unveil the presence of scale dependent features in the primordial spectrum—resulting from cosmic inflation—imprinted in the distribution of galaxies. Features may appear as a consequence of non-trivial dynamics during cosmic inflation, in which one or more background quantities experienced small but rapid deviations from their characteristic slow-roll evolution. We consider two families of features: localised features and oscillatory extended features. To characterise them we employ various possible templates parametrising their scale dependence and provide forecasts on the constraints on these parametrisations for LSST like surveys. We perform a Fisher matrix analysis for three observables: cosmic microwave background (CMB), galaxy clustering and weak lensing. We find that the combined data set of these observables will be able to limit the presence of features down to levels that are more restrictive than current constraints coming from CMB observations only. In particular, we address the possibility of gaining information on currently known deviations from scale invariance inferred from CMB data, such as the feature appearing at the l ~ 20 multipole (which is the main contribution to the low-l deficit) and another one around l ~ 800.

The Scaling Group of the 1-D Invisicid Euler Equations

NASA Astrophysics Data System (ADS)

Schmidt, Emma; Ramsey, Scott; Boyd, Zachary; Baty, Roy

2017-11-01

The one dimensional (1-D) compressible Euler equations in non-ideal media support scale invariant solutions under a variety of initial conditions. Famous scale invariant solutions include the Noh, Sedov, Guderley, and collapsing cavity hydrodynamic test problems. We unify many classical scale invariant solutions under a single scaling group analysis. The scaling symmetry group generator provides a framework for determining all scale invariant solutions emitted by the 1-D Euler equations for arbitrary geometry, initial conditions, and equation of state. We approach the Euler equations from a geometric standpoint, and conduct scaling analyses for a broad class of materials.

Resident perceptions of natural resources between cities and across scales in the Pacific Northwest

EPA Science Inventory

As the global population becomes increasingly urban, research is needed to explore how local culture, land use, andpolicy will influence urban natural resource management. We used a broad-scale comparative approach and survey of residents within the Portland (Oregon)-Vancouver (W...

Moving on up: Can Results from Simple Aquatic Mesocosm Experiments be Applied Across Broad Spatial Scales?

EPA Science Inventory

1. Aquatic ecologists use mesocosm experiments to understand mechanisms driving ecological processes. Comparisons across experiments, and extrapolations to larger scales, are complicated by the use of mesocosms with varying dimensions. We conducted a mesocosm experiment over a vo...

MODELING SCALE-DEPENDENT LANDSCAPE PATTERN, DISPERSAL, AND CONNECTIVITY FROM THE PERSPECTIVE OF THE ORGANISM

EPA Science Inventory

Effects of fine- to broad-scale patterns of landscape heterogeneity on dispersal success were examined for organisms varying in life history traits. To systematically control spatial pattern, a landscape model was created by merging physiographically-based maps of simulated land...

Validity of the General Conceptual Ability Score from the Differential Ability Scales as a Function of Significant and Rare Interfactor Variability

ERIC Educational Resources Information Center

Kotz, Kasey M.; Watkins, Marley W.; McDermott, Paul A.

2008-01-01

Some researchers have argued that discrepant broad index scores invalidate IQs, but others have questioned the fundamental logic of that argument. To resolve this debate, the present study used a nationally representative sample of children (N = 1,200) who were matched individually for IQ. Children with significantly uneven broad index score…

Broad Area Cooler Concepts for Cryogenic Propellant Tanks

NASA Technical Reports Server (NTRS)

Christie, R. J.; Tomsik, T. M.; Elchert, J. P.; Guzik, M. C.

2011-01-01

Numerous studies and ground tests have shown that broad area cooling (also known as distributed cooling) can reduce or eliminate cryogenic propellant boil-off and enable long duration storage in space. Various combinations of cryocoolers, circulators, heat exchangers and other hardware could be used to build the system. In this study, several configurations of broad area cooling systems were compared by weighing hardware combinations, input power requirements, component availability, and Technical Readiness Level (TRL). The preferred system has a high TRL and can be scaled up to provide cooling capacities on the order of 150W at 90K

The spectrum of HM Sagittae: A planetary nebula excited by a Wolf-Rayet star

NASA Technical Reports Server (NTRS)

Brown, L. W.; Feibelman, W. A.; Hobbs, R. W.; Mccracken, C. W.

1977-01-01

A total of image tube spectrograms of HM Sagittae were obtained. More than 70 emission lines, including several broad emission features, were identified. An analysis of the spectra indicates that HM Sagittae is a planetary nebula excited by a Wolf-Rayet star. The most conspicuous Wolf-Rayet feature is that attributed to a blend of C III at 4650 A and He II at 4686 A.

High-resolution face verification using pore-scale facial features.

PubMed

Li, Dong; Zhou, Huiling; Lam, Kin-Man

2015-08-01

Face recognition methods, which usually represent face images using holistic or local facial features, rely heavily on alignment. Their performances also suffer a severe degradation under variations in expressions or poses, especially when there is one gallery per subject only. With the easy access to high-resolution (HR) face images nowadays, some HR face databases have recently been developed. However, few studies have tackled the use of HR information for face recognition or verification. In this paper, we propose a pose-invariant face-verification method, which is robust to alignment errors, using the HR information based on pore-scale facial features. A new keypoint descriptor, namely, pore-Principal Component Analysis (PCA)-Scale Invariant Feature Transform (PPCASIFT)-adapted from PCA-SIFT-is devised for the extraction of a compact set of distinctive pore-scale facial features. Having matched the pore-scale features of two-face regions, an effective robust-fitting scheme is proposed for the face-verification task. Experiments show that, with one frontal-view gallery only per subject, our proposed method outperforms a number of standard verification methods, and can achieve excellent accuracy even the faces are under large variations in expression and pose.

A note on the comparative turbidity of some estuaries of the Americas

USGS Publications Warehouse

Uncles, R.J.; Smith, R.E.

2005-01-01

Field data from 27 estuaries of the Americas are used to show that, in broad terms, there is a large difference in turbidity between the analyzed east and west-coast estuaries and that tidal range and tidal length have an important influence on that turbidity. Generic, numerical sediment-transport modeling is used to illustrate this influence, which exists over a range of space scales from, e.g., the Rogue River Estuary (few km, few mg l-1) to the Bay of Fundy (hundreds of km, few g l-1). The difference in Pacific and Atlantic seaboard estuarine turbidity for the analyzed estuaries is ultimately related to the broad-scale geomorphology of the two continents.

Rotation, scale, and translation invariant pattern recognition using feature extraction

NASA Astrophysics Data System (ADS)

Prevost, Donald; Doucet, Michel; Bergeron, Alain; Veilleux, Luc; Chevrette, Paul C.; Gingras, Denis J.

1997-03-01

A rotation, scale and translation invariant pattern recognition technique is proposed.It is based on Fourier- Mellin Descriptors (FMD). Each FMD is taken as an independent feature of the object, and a set of those features forms a signature. FMDs are naturally rotation invariant. Translation invariance is achieved through pre- processing. A proper normalization of the FMDs gives the scale invariance property. This approach offers the double advantage of providing invariant signatures of the objects, and a dramatic reduction of the amount of data to process. The compressed invariant feature signature is next presented to a multi-layered perceptron neural network. This final step provides some robustness to the classification of the signatures, enabling good recognition behavior under anamorphically scaled distortion. We also present an original feature extraction technique, adapted to optical calculation of the FMDs. A prototype optical set-up was built, and experimental results are presented.

The occurrence of hormetic dose responses in the toxicological literature, the hormesis database: an overview

DOE Office of Scientific and Technical Information (OSTI.GOV)

Calabrese, Edward J.; Blain, Robyn

A relational retrieval database has been developed compiling toxicological studies assessing the occurrence of hormetic dose responses and their quantitative characteristics. This database permits an evaluation of these studies over numerous parameters, including study design and dose-response features and physical/chemical properties of the agents. The database contains approximately 5600 dose-response relationships satisfying evaluative criteria for hormesis across over approximately 900 agents from a broadly diversified spectrum of chemical classes and physical agents. The assessment reveals that hormetic dose-response relationships occur in males and females of numerous animal models in all principal age groups as well as across species displaying amore » broad range of differential susceptibilities to toxic agents. The biological models are extensive, including plants, viruses, bacteria, fungi, insects, fish, birds, rodents, and primates, including humans. The spectrum of endpoints displaying hormetic dose responses is also broad being inclusive of growth, longevity, numerous metabolic parameters, disease incidences (including cancer), various performance endpoints such as cognitive functions, immune responses among others. Quantitative features of the hormetic dose response reveal that the vast majority of cases display a maximum stimulatory response less than two-fold greater than the control while the width of the stimulatory response is typically less than 100-fold in dose range immediately contiguous with the toxicological NO(A)EL. The database also contains a quantitative evaluation component that differentiates among the various dose responses concerning the strength of the evidence supporting a hormetic conclusion based on study design features, magnitude of the stimulatory response, statistical significance, and reproducibility of findings.« less

The occurrence of hormetic dose responses in the toxicological literature, the hormesis database: an overview.

PubMed

Calabrese, Edward J; Blain, Robyn

2005-02-01

A relational retrieval database has been developed compiling toxicological studies assessing the occurrence of hormetic dose responses and their quantitative characteristics. This database permits an evaluation of these studies over numerous parameters, including study design and dose-response features and physical/chemical properties of the agents. The database contains approximately 5600 dose-response relationships satisfying evaluative criteria for hormesis across over approximately 900 agents from a broadly diversified spectrum of chemical classes and physical agents. The assessment reveals that hormetic dose-response relationships occur in males and females of numerous animal models in all principal age groups as well as across species displaying a broad range of differential susceptibilities to toxic agents. The biological models are extensive, including plants, viruses, bacteria, fungi, insects, fish, birds, rodents, and primates, including humans. The spectrum of endpoints displaying hormetic dose responses is also broad being inclusive of growth, longevity, numerous metabolic parameters, disease incidences (including cancer), various performance endpoints such as cognitive functions, immune responses among others. Quantitative features of the hormetic dose response reveal that the vast majority of cases display a maximum stimulatory response less than two-fold greater than the control while the width of the stimulatory response is typically less than 100-fold in dose range immediately contiguous with the toxicological NO(A)EL. The database also contains a quantitative evaluation component that differentiates among the various dose responses concerning the strength of the evidence supporting a hormetic conclusion based on study design features, magnitude of the stimulatory response, statistical significance, and reproducibility of findings.

Online estimation of lithium-ion battery capacity using sparse Bayesian learning

NASA Astrophysics Data System (ADS)

Hu, Chao; Jain, Gaurav; Schmidt, Craig; Strief, Carrie; Sullivan, Melani

2015-09-01

Lithium-ion (Li-ion) rechargeable batteries are used as one of the major energy storage components for implantable medical devices. Reliability of Li-ion batteries used in these devices has been recognized as of high importance from a broad range of stakeholders, including medical device manufacturers, regulatory agencies, patients and physicians. To ensure a Li-ion battery operates reliably, it is important to develop health monitoring techniques that accurately estimate the capacity of the battery throughout its life-time. This paper presents a sparse Bayesian learning method that utilizes the charge voltage and current measurements to estimate the capacity of a Li-ion battery used in an implantable medical device. Relevance Vector Machine (RVM) is employed as a probabilistic kernel regression method to learn the complex dependency of the battery capacity on the characteristic features that are extracted from the charge voltage and current measurements. Owing to the sparsity property of RVM, the proposed method generates a reduced-scale regression model that consumes only a small fraction of the CPU time required by a full-scale model, which makes online capacity estimation computationally efficient. 10 years' continuous cycling data and post-explant cycling data obtained from Li-ion prismatic cells are used to verify the performance of the proposed method.

Tag team simulation: An innovative approach for promoting active engagement of participants and observers during group simulations.

PubMed

Levett-Jones, Tracy; Andersen, Patrea; Reid-Searl, Kerry; Guinea, Stephen; McAllister, Margaret; Lapkin, Samuel; Palmer, Lorinda; Niddrie, Marian

2015-09-01

Active participation in immersive simulation experiences can result in technical and non-technical skill enhancement. However, when simulations are conducted in large groups, maintaining the interest of observers so that they do not disengage from the learning experience can be challenging. We implemented Tag Team Simulation with the aim of ensuring that both participants and observers had active and integral roles in the simulation. In this paper we outline the features of this innovative approach and provide an example of its application to a pain simulation. Evaluation was conducted using the Satisfaction with Simulation Experience Scale. A total of 444 year nursing students participated from a population of 536 (response rate 83%). Cronbach's alpha for the Scale was .94 indicating high internal consistency. The mean satisfaction score for participants was 4.63 compared to 4.56 for observers. An independent sample t test revealed no significant difference between these scores (t (300) = -1.414, p = 0.16). Tag team simulation is an effective approach for ensuring observers' and participants' active involvement during group-based simulations and one that is highly regarded by students. It has the potential for broad applicability across a range of leaning domains both within and beyond nursing. Copyright © 2015 Elsevier Ltd. All rights reserved.

Fast vessel segmentation in retinal images using multi-scale enhancement and second-order local entropy

NASA Astrophysics Data System (ADS)

Yu, H.; Barriga, S.; Agurto, C.; Zamora, G.; Bauman, W.; Soliz, P.

2012-03-01

Retinal vasculature is one of the most important anatomical structures in digital retinal photographs. Accurate segmentation of retinal blood vessels is an essential task in automated analysis of retinopathy. This paper presents a new and effective vessel segmentation algorithm that features computational simplicity and fast implementation. This method uses morphological pre-processing to decrease the disturbance of bright structures and lesions before vessel extraction. Next, a vessel probability map is generated by computing the eigenvalues of the second derivatives of Gaussian filtered image at multiple scales. Then, the second order local entropy thresholding is applied to segment the vessel map. Lastly, a rule-based decision step, which measures the geometric shape difference between vessels and lesions is applied to reduce false positives. The algorithm is evaluated on the low-resolution DRIVE and STARE databases and the publicly available high-resolution image database from Friedrich-Alexander University Erlangen-Nuremberg, Germany). The proposed method achieved comparable performance to state of the art unsupervised vessel segmentation methods with a competitive faster speed on the DRIVE and STARE databases. For the high resolution fundus image database, the proposed algorithm outperforms an existing approach both on performance and speed. The efficiency and robustness make the blood vessel segmentation method described here suitable for broad application in automated analysis of retinal images.

Emerging photovoltaic module technologies at PVUSA: A five-year assessment

NASA Astrophysics Data System (ADS)

Townsend, Tim

1995-04-01

The Photovoltaics for Utility Scale Applications (PVUSA) project tests two types of photovoltaic systems: new modules fielded as 20-kW emerging module technology (EMT) arrays, and more mature technologies fielded as 20- to 500-kW turnkey utility scale (US) systems. This report summarizes experiences of the PVUSA project in operating the first six 20-kW EMT photovoltaic systems. Five systems are installed at Davis, California, and one at Kihei, Hawaii. Products selected for testing and demonstration were judged to have potential for significant technical advancement or reduction in manufacturing cost. Features leading to selection of each system and findings over the average 5 years of operation are compared in the report. Factory product qualification test experiences along with field acceptance test results are documented. Evaluation includes a broad range of performance parameters, including long-term efficiency, seasonal generation patterns, and maintenance. While some of the arrays have operated as well as any commercial system, others have fared poorly. Throughout the procurement and operation of these precommercial PV modules, PVUSA has provided feedback to vendors, critical for product improvement. The data and evaluations in this report will be of further benefit to manufacturers and provide general comparative information on a variety of technologies to researchers in utilities, government, and industry alike.

National Hydrography Dataset Plus (NHDPlus)

EPA Pesticide Factsheets

The NHDPlus Version 1.0 is an integrated suite of application-ready geospatial data sets that incorporate many of the best features of the National Hydrography Dataset (NHD) and the National Elevation Dataset (NED). The NHDPlus includes a stream network (based on the 1:100,000-scale NHD), improved networking, naming, and value-added attributes (VAA's). NHDPlus also includes elevation-derived catchments (drainage areas) produced using a drainageenforcement technique first broadly applied in New England, and thus dubbed The New-England Method. This technique involves burning-in the 1:100,000-scale NHD and when available building walls using the national WatershedBoundary Dataset (WBD). The resulting modified digital elevation model(HydroDEM) is used to produce hydrologic derivatives that agree with the NHDand WBD. An interdisciplinary team from the U. S. Geological Survey (USGS), U.S. Environmental Protection Agency (USEPA), and contractors, over the lasttwo years has found this method to produce the best quality NHD catchments using an automated process.The VAAs include greatly enhanced capabilities for upstream and downstream navigation, analysis and modeling. Examples include: retrieve all flowlines (predominantly confluence-to-confluence stream segments) and catchments upstream of a given flowline using queries rather than by slower flowline-by flowline navigation; retrieve flowlines by stream order; subset a stream level path sorted in hydrologic order for st

Light-sheet Bayesian microscopy enables deep-cell super-resolution imaging of heterochromatin in live human embryonic stem cells.

PubMed

Hu, Ying S; Zhu, Quan; Elkins, Keri; Tse, Kevin; Li, Yu; Fitzpatrick, James A J; Verma, Inder M; Cang, Hu

2013-01-01

Heterochromatin in the nucleus of human embryonic cells plays an important role in the epigenetic regulation of gene expression. The architecture of heterochromatin and its dynamic organization remain elusive because of the lack of fast and high-resolution deep-cell imaging tools. We enable this task by advancing instrumental and algorithmic implementation of the localization-based super-resolution technique. We present light-sheet Bayesian super-resolution microscopy (LSBM). We adapt light-sheet illumination for super-resolution imaging by using a novel prism-coupled condenser design to illuminate a thin slice of the nucleus with high signal-to-noise ratio. Coupled with a Bayesian algorithm that resolves overlapping fluorophores from high-density areas, we show, for the first time, nanoscopic features of the heterochromatin structure in both fixed and live human embryonic stem cells. The enhanced temporal resolution allows capturing the dynamic change of heterochromatin with a lateral resolution of 50-60 nm on a time scale of 2.3 s. Light-sheet Bayesian microscopy opens up broad new possibilities of probing nanometer-scale nuclear structures and real-time sub-cellular processes and other previously difficult-to-access intracellular regions of living cells at the single-molecule, and single cell level.

Scalable and sustainable electrochemical allylic C-H oxidation

NASA Astrophysics Data System (ADS)

Horn, Evan J.; Rosen, Brandon R.; Chen, Yong; Tang, Jiaze; Chen, Ke; Eastgate, Martin D.; Baran, Phil S.

2016-05-01

New methods and strategies for the direct functionalization of C-H bonds are beginning to reshape the field of retrosynthetic analysis, affecting the synthesis of natural products, medicines and materials. The oxidation of allylic systems has played a prominent role in this context as possibly the most widely applied C-H functionalization, owing to the utility of enones and allylic alcohols as versatile intermediates, and their prevalence in natural and unnatural materials. Allylic oxidations have featured in hundreds of syntheses, including some natural product syntheses regarded as “classics”. Despite many attempts to improve the efficiency and practicality of this transformation, the majority of conditions still use highly toxic reagents (based around toxic elements such as chromium or selenium) or expensive catalysts (such as palladium or rhodium). These requirements are problematic in industrial settings; currently, no scalable and sustainable solution to allylic oxidation exists. This oxidation strategy is therefore rarely used for large-scale synthetic applications, limiting the adoption of this retrosynthetic strategy by industrial scientists. Here we describe an electrochemical C-H oxidation strategy that exhibits broad substrate scope, operational simplicity and high chemoselectivity. It uses inexpensive and readily available materials, and represents a scalable allylic C-H oxidation (demonstrated on 100 grams), enabling the adoption of this C-H oxidation strategy in large-scale industrial settings without substantial environmental impact.

Light-sheet Bayesian microscopy enables deep-cell super-resolution imaging of heterochromatin in live human embryonic stem cells

PubMed Central

Hu, Ying S; Zhu, Quan; Elkins, Keri; Tse, Kevin; Li, Yu; Fitzpatrick, James A J; Verma, Inder M; Cang, Hu

2016-01-01

Background Heterochromatin in the nucleus of human embryonic cells plays an important role in the epigenetic regulation of gene expression. The architecture of heterochromatin and its dynamic organization remain elusive because of the lack of fast and high-resolution deep-cell imaging tools. We enable this task by advancing instrumental and algorithmic implementation of the localization-based super-resolution technique. Results We present light-sheet Bayesian super-resolution microscopy (LSBM). We adapt light-sheet illumination for super-resolution imaging by using a novel prism-coupled condenser design to illuminate a thin slice of the nucleus with high signal-to-noise ratio. Coupled with a Bayesian algorithm that resolves overlapping fluorophores from high-density areas, we show, for the first time, nanoscopic features of the heterochromatin structure in both fixed and live human embryonic stem cells. The enhanced temporal resolution allows capturing the dynamic change of heterochromatin with a lateral resolution of 50–60 nm on a time scale of 2.3 s. Conclusion Light-sheet Bayesian microscopy opens up broad new possibilities of probing nanometer-scale nuclear structures and real-time sub-cellular processes and other previously difficult-to-access intracellular regions of living cells at the single-molecule, and single cell level. PMID:27795878

The impacts of new street light technologies: experimentally testing the effects on bats of changing from low-pressure sodium to white metal halide

PubMed Central

Stone, Emma Louise; Wakefield, Andrew; Harris, Stephen; Jones, Gareth

2015-01-01

Artificial light at night is a major feature of anthropogenic global change and is increasingly recognized as affecting biodiversity, often negatively. On a global scale, newer technology white lights are replacing orange sodium lights to reduce energy waste. In 2009, Cornwall County Council (UK) commenced replacement of existing low-pressure sodium (LPS) high intensity discharge (HID) street lights with new Phillips CosmoPolis white ceramic metal halide street lights to reduce energy wastage. This changeover provided a unique collaborative opportunity to implement a before-after-control-impact field experiment to investigate the ecological effects of newly installed broad spectrum light technologies. Activity of the bat species Pipistrellus pipistrellus, P. pygmaeus and Nyctalus/Eptesicus spp. was significantly higher at metal halide than LPS lights, as found in other studies of bat activity at old technology (i.e. mercury vapour) white light types. No significant difference was found in feeding attempts per bat pass between light types, though more passes overall were recorded at metal halide lights. Species-specific attraction of bats to the metal halide lights could have cascading effects at lower trophic levels. We highlight the need for further research on possible ecosystem-level effects of light technologies before they are installed on a wide scale. PMID:25780239

New Evidence on Self-Affirmation Effects and Theorized Sources of Heterogeneity from Large-Scale Replications

PubMed Central

Hanselman, Paul; Rozek, Christopher S.; Grigg, Jeffrey; Borman, Geoffrey D.

2016-01-01

Brief, targeted self-affirmation writing exercises have recently been offered as a way to reduce racial achievement gaps, but evidence about their effects in educational settings is mixed, leaving ambiguity about the likely benefits of these strategies if implemented broadly. A key limitation in interpreting these mixed results is that they come from studies conducted by different research teams with different procedures in different settings; it is therefore impossible to isolate whether different effects are the result of theorized heterogeneity, unidentified moderators, or idiosyncratic features of the different studies. We addressed this limitation by conducting a well-powered replication of self-affirmation in a setting where a previous large-scale field experiment demonstrated significant positive impacts, using the same procedures. We found no evidence of effects in this replication study and estimates were precise enough to reject benefits larger than an effect size of 0.10. These null effects were significantly different from persistent benefits in the prior study in the same setting, and extensive testing revealed that currently theorized moderators of self-affirmation effects could not explain the difference. These results highlight the potential fragility of self-affirmation in educational settings when implemented widely and the need for new theory, measures, and evidence about the necessary conditions for self-affirmation success. PMID:28450753

Renormalization group approach to power-law modeling of complex metabolic networks.

PubMed

Hernández-Bermejo, Benito

2010-08-07

In the modeling of complex biological systems, and especially in the framework of the description of metabolic pathways, the use of power-law models (such as S-systems and GMA systems) often provides a remarkable accuracy over several orders of magnitude in concentrations, an unusually broad range not fully understood at present. In order to provide additional insight in this sense, this article is devoted to the renormalization group analysis of reactions in fractal or self-similar media. In particular, the renormalization group methodology is applied to the investigation of how rate-laws describing such reactions are transformed when the geometric scale is changed. The precise purpose of such analysis is to investigate whether or not power-law rate-laws present some remarkable features accounting for the successes of power-law modeling. As we shall see, according to the renormalization group point of view the answer is positive, as far as power-laws are the critical solutions of the renormalization group transformation, namely power-law rate-laws are the renormalization group invariant solutions. Moreover, it is shown that these results also imply invariance under the group of concentration scalings, thus accounting for the reported power-law model accuracy over several orders of magnitude in metabolite concentrations. Copyright 2010 Elsevier Ltd. All rights reserved.

Why are most aquatic plants widely distributed? Dispersal, clonal growth and small-scale heterogeneity in a stressful environment

NASA Astrophysics Data System (ADS)

Santamaría, Luis

2002-06-01

Non-marine aquatic vascular plants generally show broad distributional ranges. Climatic factors seem to have limited effects on their distributions, besides the determination of major disjunctions (tropical-temperate-subarctic). Dispersal should have been frequent enough to assure the quick colonisation of extensive areas following glacial retreat, but dispersal limitation is still apparent in areas separated by geographic barriers. Aquatic vascular plants also show limited taxonomic differentiation and low within-species genetic variation. Variation within populations is particularly low, but variation among populations seems to be relatively high, mainly due to the persistence of long-lived clones. Ecotypic differentiation is often related to factors that constrain clonal reproduction (salinity and ephemeral inundation). Inland aquatic habitats are heterogeneous environments, but this heterogeneity largely occurs at relatively small scales (within waterbodies and among neighbouring ones). They also represent a stressful environment for plants, characterised by low carbon availability, shaded conditions, sediment anoxia, mechanical damage by currents and waves, significant restrictions to sexual reproduction, and sometimes also osmotic stress and limited nutrient supply. I propose that the generality of broad distributions and low differentiation among the inland aquatic flora is best explained by a combination of: (1) selection for stress-tolerant taxa with broad tolerance ranges. (2) The selective advantages provided by clonal growth and multiplication, which increases plant tolerance to stress, genet survivorship and population viability. (3) Long-distance dispersal of sexual propagules and high local dispersal of asexual clones. (4) The generality of broad plastic responses, promoted by the combination of clonal growth, high local dispersal, small-scale spatial heterogeneity and temporal variability.

Evaluating the utility of dynamical downscaling in agricultural impacts projections

PubMed Central

Glotter, Michael; Elliott, Joshua; McInerney, David; Best, Neil; Foster, Ian; Moyer, Elisabeth J.

2014-01-01

Interest in estimating the potential socioeconomic costs of climate change has led to the increasing use of dynamical downscaling—nested modeling in which regional climate models (RCMs) are driven with general circulation model (GCM) output—to produce fine-spatial-scale climate projections for impacts assessments. We evaluate here whether this computationally intensive approach significantly alters projections of agricultural yield, one of the greatest concerns under climate change. Our results suggest that it does not. We simulate US maize yields under current and future CO2 concentrations with the widely used Decision Support System for Agrotechnology Transfer crop model, driven by a variety of climate inputs including two GCMs, each in turn downscaled by two RCMs. We find that no climate model output can reproduce yields driven by observed climate unless a bias correction is first applied. Once a bias correction is applied, GCM- and RCM-driven US maize yields are essentially indistinguishable in all scenarios (<10% discrepancy, equivalent to error from observations). Although RCMs correct some GCM biases related to fine-scale geographic features, errors in yield are dominated by broad-scale (100s of kilometers) GCM systematic errors that RCMs cannot compensate for. These results support previous suggestions that the benefits for impacts assessments of dynamically downscaling raw GCM output may not be sufficient to justify its computational demands. Progress on fidelity of yield projections may benefit more from continuing efforts to understand and minimize systematic error in underlying climate projections. PMID:24872455

Three-dimensionally preserved integument reveals hydrodynamic adaptations in the extinct marine lizard Ectenosaurus (Reptilia, Mosasauridae).

PubMed

Lindgren, Johan; Everhart, Michael J; Caldwell, Michael W

2011-01-01

The physical properties of water and the environment it presents to its inhabitants provide stringent constraints and selection pressures affecting aquatic adaptation and evolution. Mosasaurs (a group of secondarily aquatic reptiles that occupied a broad array of predatory niches in the Cretaceous marine ecosystems about 98-65 million years ago) have traditionally been considered as anguilliform locomotors capable only of generating short bursts of speed during brief ambush pursuits. Here we report on an exceptionally preserved, long-snouted mosasaur (Ectenosaurus clidastoides) from the Santonian (Upper Cretaceous) part of the Smoky Hill Chalk Member of the Niobrara Formation in western Kansas, USA, that contains phosphatized remains of the integument displaying both depth and structure. The small, ovoid neck and/or anterior trunk scales exhibit a longitudinal central keel, and are obliquely arrayed into an alternating pattern where neighboring scales overlap one another. Supportive sculpturing in the form of two parallel, longitudinal ridges on the inner scale surface and a complex system of multiple, superimposed layers of straight, cross-woven helical fiber bundles in the underlying dermis, may have served to minimize surface deformation and frictional drag during locomotion. Additional parallel fiber bundles oriented at acute angles to the long axis of the animal presumably provided stiffness in the lateral plane. These features suggest that the anterior torso of Ectenosaurus was held somewhat rigid during swimming, thereby limiting propulsive movements to the posterior body and tail.

Competition between Primary Nucleation and Autocatalysis in Amyloid Fibril Self-Assembly

PubMed Central

Eden, Kym; Morris, Ryan; Gillam, Jay; MacPhee, Cait E.; Allen, Rosalind J.

2015-01-01

Kinetic measurements of the self-assembly of proteins into amyloid fibrils are often used to make inferences about molecular mechanisms. In particular, the lag time—the quiescent period before aggregates are detected—is often found to scale with the protein concentration as a power law, whose exponent has been used to infer the presence or absence of autocatalytic growth processes such as fibril fragmentation. Here we show that experimental data for lag time versus protein concentration can show signs of kinks: clear changes in scaling exponent, indicating changes in the dominant molecular mechanism determining the lag time. Classical models for the kinetics of fibril assembly suggest that at least two mechanisms are at play during the lag time: primary nucleation and autocatalytic growth. Using computer simulations and theoretical calculations, we investigate whether the competition between these two processes can account for the kinks which we observe in our and others’ experimental data. We derive theoretical conditions for the crossover between nucleation-dominated and growth-dominated regimes, and analyze their dependence on system volume and autocatalysis mechanism. Comparing these predictions to the data, we find that the experimentally observed kinks cannot be explained by a simple crossover between nucleation-dominated and autocatalytic growth regimes. Our results show that existing kinetic models fail to explain detailed features of lag time versus concentration curves, suggesting that new mechanistic understanding is needed. More broadly, our work demonstrates that care is needed in interpreting lag-time scaling exponents from protein assembly data. PMID:25650930

Signature detection and matching for document image retrieval.

PubMed

Zhu, Guangyu; Zheng, Yefeng; Doermann, David; Jaeger, Stefan

2009-11-01

As one of the most pervasive methods of individual identification and document authentication, signatures present convincing evidence and provide an important form of indexing for effective document image processing and retrieval in a broad range of applications. However, detection and segmentation of free-form objects such as signatures from clustered background is currently an open document analysis problem. In this paper, we focus on two fundamental problems in signature-based document image retrieval. First, we propose a novel multiscale approach to jointly detecting and segmenting signatures from document images. Rather than focusing on local features that typically have large variations, our approach captures the structural saliency using a signature production model and computes the dynamic curvature of 2D contour fragments over multiple scales. This detection framework is general and computationally tractable. Second, we treat the problem of signature retrieval in the unconstrained setting of translation, scale, and rotation invariant nonrigid shape matching. We propose two novel measures of shape dissimilarity based on anisotropic scaling and registration residual error and present a supervised learning framework for combining complementary shape information from different dissimilarity metrics using LDA. We quantitatively study state-of-the-art shape representations, shape matching algorithms, measures of dissimilarity, and the use of multiple instances as query in document image retrieval. We further demonstrate our matching techniques in offline signature verification. Extensive experiments using large real-world collections of English and Arabic machine-printed and handwritten documents demonstrate the excellent performance of our approaches.

Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale

PubMed Central

Chemidlin Prévost-Bouré, Nicolas; Dequiedt, Samuel; Thioulouse, Jean; Lelièvre, Mélanie; Saby, Nicolas P. A.; Jolivet, Claudy; Arrouays, Dominique; Plassart, Pierre; Lemanceau, Philippe; Ranjard, Lionel

2014-01-01

Spatial scaling of microorganisms has been demonstrated over the last decade. However, the processes and environmental filters shaping soil microbial community structure on a broad spatial scale still need to be refined and ranked. Here, we compared bacterial and fungal community composition turnovers through a biogeographical approach on the same soil sampling design at a broad spatial scale (area range: 13300 to 31000 km2): i) to examine their spatial structuring; ii) to investigate the relative importance of environmental selection and spatial autocorrelation in determining their community composition turnover; and iii) to identify and rank the relevant environmental filters and scales involved in their spatial variations. Molecular fingerprinting of soil bacterial and fungal communities was performed on 413 soils from four French regions of contrasting environmental heterogeneity (Landes

Similar processes but different environmental filters for soil bacterial and fungal community composition turnover on a broad spatial scale.

PubMed

Chemidlin Prévost-Bouré, Nicolas; Dequiedt, Samuel; Thioulouse, Jean; Lelièvre, Mélanie; Saby, Nicolas P A; Jolivet, Claudy; Arrouays, Dominique; Plassart, Pierre; Lemanceau, Philippe; Ranjard, Lionel

2014-01-01

Spatial scaling of microorganisms has been demonstrated over the last decade. However, the processes and environmental filters shaping soil microbial community structure on a broad spatial scale still need to be refined and ranked. Here, we compared bacterial and fungal community composition turnovers through a biogeographical approach on the same soil sampling design at a broad spatial scale (area range: 13300 to 31000 km2): i) to examine their spatial structuring; ii) to investigate the relative importance of environmental selection and spatial autocorrelation in determining their community composition turnover; and iii) to identify and rank the relevant environmental filters and scales involved in their spatial variations. Molecular fingerprinting of soil bacterial and fungal communities was performed on 413 soils from four French regions of contrasting environmental heterogeneity (Landes

The 2008 North Atlantic Spring Bloom Experiment II: Autonomous Platforms and Mixed Layer Evolution

NASA Astrophysics Data System (ADS)

Lee, C. M.; D'Asaro, E. A.; Perry, M.; Fennel, K.; Gray, A.; Rehm, E.; Briggs, N.; Sackmann, B. S.; Gudmundsson, K.

2008-12-01

The 2008 North Atlantic Spring Bloom Experiment (NAB08) employed a system of drifting floats, mobile gliders and ship-based measurements to resolve patch-scale physical and biological variability over the 3- month course of an entire bloom. Although both autonomous and ship-based elements were essential to achieving NAB08 goals, the autonomous system provided a novel perspective by employing long-range gliders to repeatedly survey the volume surrounding a drifting Lagrangian float, thus characterizing patch- scale bloom evolution. Integration of physical and biogeochemical sensors (temperature, conductivity, dissolved oxygen, chlorophyll and CDOM fluorescence, light transmission, optical backscatter, spectral light, and nitrate) and development of in situ calibration techniques were required to support this new autonomous approach. Energetic, small-scale eddy activity at the experiment site (southeast of Iceland, near the Joint Global Ocean Flux Study and Marine Light Mixed Layer sites) produced a swift, heterogeneous velocity field that challenged the gliders" operational abilities and drove refinements to the piloting techniques used to maintain float-following surveys. Although intentionally deployed outside of energetic eddies, floats and gliders were rapidly entrained into these features. Floats circulated within eddies near the start and end of the experiment, drifting generally northwest, across the basin, in-between. An eddy sampled late in the deployment provided particularly interesting signatures, with elevated biological signals manifest consistently in one quadrant. As measurements were collected in a parcel-following Lagrangian frame, this suggests energetic small-scale exchange process (such as vertical or lateral mixing) paired with fast-acting biological processes capable of modifying the newly entrained water as it navigates its path around the eddy. Despite this energetic kilometer-scale heterogeneity, broadly distributed platforms appeared to experience similar broad, long-timescale trends. Initial mixed layer depths exceeded 200 m, with gradual shoaling punctuated by periods of rapid, storm-driven deepening. In mid-April, a period of calm weather, rapid restratification and exponentially growing chlorophyll fluorescence marks the bloom's start. Although one-dimensional processes (e.g. diapycnal mixing and solar warming) clearly play important roles in producing the spring bloom, the rate and vertical extent of upper ocean restratification indicate that lateral mixing, perhaps wind- or eddy-driven exchange or the slumping of lateral density contrasts, play a more important role in restratifying the upper ocean. These important trigger events present a severe observational challenge as they take place at small (kilometers) spatial scales, are fully three-dimensional and episodic in time. The NAB08 efforts demonstrate how mobile, autonomous platforms can be exploited to resolve these events and their impact over the course of an entire bloom cycle.

Understanding extreme sea levels for broad-scale coastal impact and adaptation analysis

NASA Astrophysics Data System (ADS)

Wahl, T.; Haigh, I. D.; Nicholls, R. J.; Arns, A.; Dangendorf, S.; Hinkel, J.; Slangen, A. B. A.

2017-07-01

One of the main consequences of mean sea level rise (SLR) on human settlements is an increase in flood risk due to an increase in the intensity and frequency of extreme sea levels (ESL). While substantial research efforts are directed towards quantifying projections and uncertainties of future global and regional SLR, corresponding uncertainties in contemporary ESL have not been assessed and projections are limited. Here we quantify, for the first time at global scale, the uncertainties in present-day ESL estimates, which have by default been ignored in broad-scale sea-level rise impact assessments to date. ESL uncertainties exceed those from global SLR projections and, assuming that we meet the Paris agreement goals, the projected SLR itself by the end of the century in many regions. Both uncertainties in SLR projections and ESL estimates need to be understood and combined to fully assess potential impacts and adaptation needs.

Infrared radiation models for atmospheric methane

NASA Technical Reports Server (NTRS)

Cess, R. D.; Kratz, D. P.; Caldwell, J.; Kim, S. J.

1986-01-01

Mutually consistent line-by-line, narrow-band and broad-band infrared radiation models are presented for methane, a potentially important anthropogenic trace gas within the atmosphere. Comparisons of the modeled band absorptances with existing laboratory data produce the best agreement when, within the band models, spurious band intensities are used which are consistent with the respective laboratory data sets, but which are not consistent with current knowledge concerning the intensity of the infrared fundamental band of methane. This emphasizes the need for improved laboratory band absorptance measurements. Since, when applied to atmospheric radiation calculations, the line-by-line model does not require the use of scaling approximations, the mutual consistency of the band models provides a means of appraising the accuracy of scaling procedures. It is shown that Curtis-Godson narrow-band and Chan-Tien broad-band scaling provide accurate means of accounting for atmospheric temperature and pressure variations.

Interactions between hyporheic flow produced by stream meanders, bars, and dunes

USGS Publications Warehouse

Stonedahl, Susa H.; Harvey, Judson W.; Packman, Aaron I.

2013-01-01

Stream channel morphology from grain-scale roughness to large meanders drives hyporheic exchange flow. In practice, it is difficult to model hyporheic flow over the wide spectrum of topographic features typically found in rivers. As a result, many studies only characterize isolated exchange processes at a single spatial scale. In this work, we simulated hyporheic flows induced by a range of geomorphic features including meanders, bars and dunes in sand bed streams. Twenty cases were examined with 5 degrees of river meandering. Each meandering river model was run initially without any small topographic features. Models were run again after superimposing only bars and then only dunes, and then run a final time after including all scales of topographic features. This allowed us to investigate the relative importance and interactions between flows induced by different scales of topography. We found that dunes typically contributed more to hyporheic exchange than bars and meanders. Furthermore, our simulations show that the volume of water exchanged and the distributions of hyporheic residence times resulting from various scales of topographic features are close to, but not linearly additive. These findings can potentially be used to develop scaling laws for hyporheic flow that can be widely applied in streams and rivers.

Temporal modulations in speech and music.

PubMed

Ding, Nai; Patel, Aniruddh D; Chen, Lin; Butler, Henry; Luo, Cheng; Poeppel, David

2017-10-01

Speech and music have structured rhythms. Here we discuss a major acoustic correlate of spoken and musical rhythms, the slow (0.25-32Hz) temporal modulations in sound intensity and compare the modulation properties of speech and music. We analyze these modulations using over 25h of speech and over 39h of recordings of Western music. We show that the speech modulation spectrum is highly consistent across 9 languages (including languages with typologically different rhythmic characteristics). A different, but similarly consistent modulation spectrum is observed for music, including classical music played by single instruments of different types, symphonic, jazz, and rock. The temporal modulations of speech and music show broad but well-separated peaks around 5 and 2Hz, respectively. These acoustically dominant time scales may be intrinsic features of speech and music, a possibility which should be investigated using more culturally diverse samples in each domain. Distinct modulation timescales for speech and music could facilitate their perceptual analysis and its neural processing. Copyright © 2017 Elsevier Ltd. All rights reserved.

Biomimetics: lessons from nature--an overview.

PubMed

Bhushan, Bharat

2009-04-28

Nature has developed materials, objects and processes that function from the macroscale to the nanoscale. These have gone through evolution over 3.8 Gyr. The emerging field of biomimetics allows one to mimic biology or nature to develop nanomaterials, nanodevices and processes. Properties of biological materials and surfaces result from a complex interplay between surface morphology and physical and chemical properties. Hierarchical structures with dimensions of features ranging from the macroscale to the nanoscale are extremely common in nature to provide properties of interest. Molecular-scale devices, superhydrophobicity, self-cleaning, drag reduction in fluid flow, energy conversion and conservation, high adhesion, reversible adhesion, aerodynamic lift, materials and fibres with high mechanical strength, biological self-assembly, antireflection, structural coloration, thermal insulation, self-healing and sensory-aid mechanisms are some of the examples found in nature that are of commercial interest. This paper provides a broad overview of the various objects and processes of interest found in nature and applications under development or available in the marketplace.

Reviews Equipment: Data logger Book: Imagined Worlds Equipment: Mini data loggers Equipment: PICAXE-18M2 data logger Books: Engineering: A Very Short Introduction and To Engineer Is Human Book: Soap, Science, & Flat-Screen TVs Equipment: uLog and SensorLab Web Watch

NASA Astrophysics Data System (ADS)

2012-07-01

WE RECOMMEND Data logger Fourier NOVA LINK: data logging and analysis To Engineer is Human Engineering: essays and insights Soap, Science, & Flat-Screen TVs People, politics, business and science overlap uLog sensors and sensor adapter A new addition to the LogIT range offers simplicity and ease of use WORTH A LOOK Imagined Worlds Socio-scientific predictions for the future Mini light data logger and mini temperature data logger Small-scale equipment for schools SensorLab Plus LogIT's supporting software, with extra features HANDLE WITH CARE CAXE110P PICAXE-18M2 data logger Data logger 'on view' but disappoints Engineering: A Very Short Introduction A broad-brush treatment fails to satisfy WEB WATCH Two very different websites for students: advanced physics questions answered and a more general BBC science resource

Ecosystem services: From theory to implementation

PubMed Central

Daily, Gretchen C.; Matson, Pamela A.

2008-01-01

Around the world, leaders are increasingly recognizing ecosystems as natural capital assets that supply life-support services of tremendous value. The challenge is to turn this recognition into incentives and institutions that will guide wise investments in natural capital, on a large scale. Advances are required on three key fronts, each featured here: the science of ecosystem production functions and service mapping; the design of appropriate finance, policy, and governance systems; and the art of implementing these in diverse biophysical and social contexts. Scientific understanding of ecosystem production functions is improving rapidly but remains a limiting factor in incorporating natural capital into decisions, via systems of national accounting and other mechanisms. Novel institutional structures are being established for a broad array of services and places, creating a need and opportunity for systematic assessment of their scope and limitations. Finally, it is clear that formal sharing of experience, and defining of priorities for future work, could greatly accelerate the rate of innovation and uptake of new approaches. PMID:18621697

Elastic properties of compressed emulsions

NASA Astrophysics Data System (ADS)

Jorjadze, Ivane; Brujic, Jasna

2012-02-01

Visualizing the packing of a dense emulsion in 3D as a function of the external pressure allows us to characterize the geometry and the local stress distribution inside this jammed system. We first test the scaling laws of the pressure and average coordination number over two orders of magnitude in density. We find deviations from theoretical exponents due to the non-affine motion of the particles. Second, we observe that the distribution of forces changes from a broad exponential at the jamming point to a narrower Gaussian-like distribution under high compression. Finally, we calculate the density of states from the measured force network in the approximation of a harmonic potential. Close to jamming, the number of low frequency modes is high, while the application of pressure shifts the distribution to higher frequencies, indicative of a rigid network. The confocal images reveal the structural features associated with the low frequency modes, as well as their localization within the packing. These data are then compared with published results from numerical simulations.

Quality of life in adolescents and adults with CHARGE syndrome.

PubMed

Hartshorne, Nancy; Hudson, Alexandra; MacCuspie, Jillian; Kennert, Benjamin; Nacarato, Tasha; Hartshorne, Timothy; Blake, Kim

2016-08-01

Health-related Quality of Life and the Impact of Childhood Neurologic Disability Scale were collected for 53 patients with CHARGE syndrome aged 13-39 years with a mean academic level of 4th grade. The most prevalent new and ongoing issues included bone health issues, sleep apnea, retinal detachment, anxiety, and aggression. Sleep issues were significantly correlated with anxiety, self-abuse, conduct problems, and autistic-like behaviors. Problems with overall health, behavior, and balance most affected the number of social activities in the individual's life. Sensory impairment most affected relationships with friends. Two contrasting case studies are presented and demonstrate that the quality of life exists on a broad spectrum in CHARGE syndrome, just as its physical features range from mild to very severe. A multitude of factors, including those beyond the physical manifestations, such as anxiety and sleep problems, influence quality of life and are important areas for intervention. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

The Function and Organization of the Motor System Controlling Flight Maneuvers in Flies.

PubMed

Lindsay, Theodore; Sustar, Anne; Dickinson, Michael

2017-02-06

Animals face the daunting task of controlling their limbs using a small set of highly constrained actuators. This problem is particularly demanding for insects such as Drosophila, which must adjust wing motion for both quick voluntary maneuvers and slow compensatory reflexes using only a dozen pairs of muscles. To identify strategies by which animals execute precise actions using sparse motor networks, we imaged the activity of a complete ensemble of wing control muscles in intact, flying flies. Our experiments uncovered a remarkably efficient logic in which each of the four skeletal elements at the base of the wing are equipped with both large phasically active muscles capable of executing large changes and smaller tonically active muscles specialized for continuous fine-scaled adjustments. Based on the responses to a broad panel of visual motion stimuli, we have developed a model by which the motor array regulates aerodynamically functional features of wing motion. VIDEO ABSTRACT. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ultra-thin high-efficiency mid-infrared transmissive Huygens meta-optics.

PubMed

Zhang, Li; Ding, Jun; Zheng, Hanyu; An, Sensong; Lin, Hongtao; Zheng, Bowen; Du, Qingyang; Yin, Gufan; Michon, Jerome; Zhang, Yifei; Fang, Zhuoran; Shalaginov, Mikhail Y; Deng, Longjiang; Gu, Tian; Zhang, Hualiang; Hu, Juejun

2018-04-16

The mid-infrared (mid-IR) is a strategically important band for numerous applications ranging from night vision to biochemical sensing. Here we theoretically analyzed and experimentally realized a Huygens metasurface platform capable of fulfilling a diverse cross-section of optical functions in the mid-IR. The meta-optical elements were constructed using high-index chalcogenide films deposited on fluoride substrates: the choices of wide-band transparent materials allow the design to be scaled across a broad infrared spectrum. Capitalizing on a two-component Huygens' meta-atom design, the meta-optical devices feature an ultra-thin profile (λ 0 /8 in thickness) and measured optical efficiencies up to 75% in transmissive mode for linearly polarized light, representing major improvements over state-of-the-art. We have also demonstrated mid-IR transmissive meta-lenses with diffraction-limited focusing and imaging performance. The projected size, weight and power advantages, coupled with the manufacturing scalability leveraging standard microfabrication technologies, make the Huygens meta-optical devices promising for next-generation mid-IR system applications.

Femtosecond electron imaging of defect-modulated phonon dynamics

PubMed Central

Cremons, Daniel R.; Plemmons, Dayne A.; Flannigan, David J.

2016-01-01

Precise manipulation and control of coherent lattice oscillations via nanostructuring and phonon-wave interference has the potential to significantly impact a broad array of technologies and research areas. Resolving the dynamics of individual phonons in defect-laden materials presents an enormous challenge, however, owing to the interdependent nanoscale and ultrafast spatiotemporal scales. Here we report direct, real-space imaging of the emergence and evolution of acoustic phonons at individual defects in crystalline WSe2 and Ge. Via bright-field imaging with an ultrafast electron microscope, we are able to image the sub-picosecond nucleation and the launch of wavefronts at step edges and resolve dispersion behaviours during propagation and scattering. We discover that the appearance of speed-of-sound (for example, 6 nm ps−1) wavefronts are influenced by spatially varying nanoscale strain fields, taking on the appearance of static bend contours during propagation. These observations provide unprecedented insight into the roles played by individual atomic and nanoscale features on acoustic-phonon dynamics. PMID:27079790

An Enduring Rapidly Moving Storm as a Guide to Saturn's Equatorial Jet's Complex Structure

NASA Technical Reports Server (NTRS)

Sanchez-Lavega, A.; Garcia-Melendo, E.; Perez-Hoyos, S.; Hueso, R.; Wong, M. H.; Simon, A.; Sanz-Requena, J. F.; Antunano, A.; Barrado-Izagirre, N.; Garate-Lopez, I.;

Nanoparticle separation with a miniaturized asymmetrical flow field-flow fractionation cartridge

PubMed Central

Müller, David; Cattaneo, Stefano; Meier, Florian; Welz, Roland; de Mello, Andrew J.

2015-01-01

Asymmetrical Flow Field-Flow Fractionation (AF4) is a separation technique applicable to particles over a wide size range. Despite the many advantages of AF4, its adoption in routine particle analysis is somewhat limited by the large footprint of currently available separation cartridges, extended analysis times and significant solvent consumption. To address these issues, we describe the fabrication and characterization of miniaturized AF4 cartridges. Key features of the down-scaled platform include simplified cartridge and reagent handling, reduced analysis costs and higher throughput capacities. The separation performance of the miniaturized cartridge is assessed using certified gold and silver nanoparticle standards. Analysis of gold nanoparticle populations indicates shorter analysis times and increased sensitivity compared to conventional AF4 separation schemes. Moreover, nanoparticulate titanium dioxide populations exhibiting broad size distributions are analyzed in a rapid and efficient manner. Finally, the repeatability and reproducibility of the miniaturized platform are investigated with respect to analysis time and separation efficiency. PMID:26258119

Nanoparticle separation with a miniaturized asymmetrical flow field-flow fractionation cartridge

NASA Astrophysics Data System (ADS)

Müller, David; Cattaneo, Stefano; Meier, Florian; Welz, Roland; deMello, Andrew

2015-07-01

Asymmetrical Flow Field-Flow Fractionation (AF4) is a separation technique applicable to particles over a wide size range. Despite the many advantages of AF4, its adoption in routine particle analysis is somewhat limited by the large footprint of currently available separation cartridges, extended analysis times and significant solvent consumption. To address these issues, we describe the fabrication and characterization of miniaturized AF4 cartridges. Key features of the scale-down platform include simplified cartridge and reagent handling, reduced analysis costs and higher throughput capacities. The separation performance of the miniaturized cartridge is assessed using certified gold and silver nanoparticle standards. Analysis of gold nanoparticle populations indicates shorter analysis times and increased sensitivity compared to conventional AF4 separation schemes. Moreover, nanoparticulate titanium dioxide populations exhibiting broad size distributions are analyzed in a rapid and efficient manner. Finally, the repeatability and reproducibility of the miniaturized platform are investigated with respect to analysis time and separation efficiency.

Ecosystem services: from theory to implementation.

PubMed

Daily, Gretchen C; Matson, Pamela A

2008-07-15

Around the world, leaders are increasingly recognizing ecosystems as natural capital assets that supply life-support services of tremendous value. The challenge is to turn this recognition into incentives and institutions that will guide wise investments in natural capital, on a large scale. Advances are required on three key fronts, each featured here: the science of ecosystem production functions and service mapping; the design of appropriate finance, policy, and governance systems; and the art of implementing these in diverse biophysical and social contexts. Scientific understanding of ecosystem production functions is improving rapidly but remains a limiting factor in incorporating natural capital into decisions, via systems of national accounting and other mechanisms. Novel institutional structures are being established for a broad array of services and places, creating a need and opportunity for systematic assessment of their scope and limitations. Finally, it is clear that formal sharing of experience, and defining of priorities for future work, could greatly accelerate the rate of innovation and uptake of new approaches.

Search for gamma-ray transients using the SMM spectrometer

NASA Technical Reports Server (NTRS)

Share, G. H.; Harris, M. J.; Leising, M. D.; Messina, D. C.

1993-01-01

Observations for transient radiation made by the Gamma Ray Spectrometer on the SMM satellite are summarized. Spectra were obtained from 215 solar flares and 177 gamma-ray bursts. No narrow or moderately broadened lines were observed in any of the bursts. The rate of bursts is consistent with a constant over the mission but is weakly correlated with solar activity. No evidence was found for bursts of 511 keV line emission, unaccompanied by a strong continuum, at levels not less than 0.05 gamma/sq cm s for bursts lasting not more than 16 s. No evidence was found for broad features near 1 MeV from Cyg X-1, the Galactic center, or the Crab in 12-d integrations at levels not less than 0.006 gamma/sq cm s. No evidence was found for transient celestial narrow-line emission from 300 keV to 7 MeV on min-to-hrs-long time scales from 1984 to 1989.

Observations of comet 19P/Borrelly by the miniature integrated camera and spectrometer aboard deep space 1

USGS Publications Warehouse

Soderblom, L.A.; Becker, T.L.; Bennett, G.; Boice, D.C.; Britt, D.T.; Brown, R.H.; Buratti, B.J.; Isbell, C.; Giese, B.; Hare, T.; Hicks, M.D.; Howington-Kraus, E.; Kirk, R.L.; Lee, M.; Nelson, R.M.; Oberst, J.; Owen, T.C.; Rayman, M.D.; Sandel, B.R.; Stern, S.A.; Thomas, N.; Yelle, R.V.

2002-01-01

The nucleus of the Jupiter-family comet 19P/Borrelly was closely observed by the Miniature Integrated Camera and Spectrometer aboard the Deep Space 1 spacecraft on 22 September 2001. The 8-kilometer-long body is highly variegated on a scale of 200 meters, exhibiting large albedo variations (0.01 to 0.03) and complex geologic relationships. Short-wavelength infrared spectra (1.3 to 2.6 micrometers) show a slope toward the red and a hot, dry surface (???345 kelvin, with no trace of water ice or hydrated minerals), consistent with ???10% or less of the surface actively sublimating. Borrelly's coma exhibits two types of dust features: fans and highly collimated jets. At encounter, the near-nucleus coma was dominated by a prominent dust jet that resolved into at least three smaller jets emanating from a broad basin in the middle of the nucleus. Because the major dust jet remained fixed in orientation, it is evidently aligned near the rotation axis of the nucleus.

Assessment of Borderline Personality Features in Population Samples: Is the Personality Assessment Inventory-Borderline Features Scale Measurement Invariant across Sex and Age?

ERIC Educational Resources Information Center

De Moor, Marleen H. M.; Distel, Marijn A.; Trull, Timothy J.; Boomsma, Dorret I.

2009-01-01

Borderline personality disorder (BPD) is more often diagnosed in women than in men, and symptoms tend to decline with age. Using a large community sample, the authors investigated whether sex and age differences in four main features of BPD, measured with the "Personality Assessment Inventory-Borderline Features" scale (PAI-BOR; Morey,…

Closeup view, looking toward project north at the south elevation ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Close-up view, looking toward project north at the south elevation of the tower, and featuring the single-story, wood-frame addition to the east side of the tower. The addition covered the stone-lined, gravity-fed water cistern, and contained a pump (now removed) that lifted water from the cistern into the water tank for use by trains. - East Broad Top Railroad & Company, Water Tank at Coles Station, East Broad Top Railroad & Company (at Milepost 24.3), 0.5 miles east of Coles Valley Road, Saltillo, Huntingdon County, PA

Closeup view, looking toward project south at the north elevation ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Close-up view, looking toward project south at the north elevation of the tower, and featuring the single-story, wood-frame addition to the east side of the tower. The addition covered the stone-lined, gravity-fed water cistern, and contained a pump (now removed) that lifted water from the cistern into the water tank for use by trains. - East Broad Top Railroad & Company, Water Tank at Coles Station, East Broad Top Railroad & Company (at Milepost 24.3), 0.5 miles east of Coles Valley Road, Saltillo, Huntingdon County, PA

Comparative evaluation of Populus variants total sugar release and structural features following pretreatment and digestion by two distinct biological systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas, Vanessa A.; Kothari, Ninad; Bhagia, Samarthya

Populus natural variants have been shown to realize a broad range of sugar yields during saccharification, however, the structural features responsible for higher sugar release from natural variants are not clear. In addition, the sugar release patterns resulting from digestion with two distinct biological systems, fungal enzymes and Clostridium thermocellum, have yet to be evaluated and compared. This study evaluates the effect of structural features of three natural variant Populus lines, which includes the line BESC standard, with respect to the overall process of sugar release for two different biological systems.

Comparative evaluation of Populus variants total sugar release and structural features following pretreatment and digestion by two distinct biological systems

DOE PAGES

Thomas, Vanessa A.; Kothari, Ninad; Bhagia, Samarthya; ...

2017-11-30

Populus natural variants have been shown to realize a broad range of sugar yields during saccharification, however, the structural features responsible for higher sugar release from natural variants are not clear. In addition, the sugar release patterns resulting from digestion with two distinct biological systems, fungal enzymes and Clostridium thermocellum, have yet to be evaluated and compared. This study evaluates the effect of structural features of three natural variant Populus lines, which includes the line BESC standard, with respect to the overall process of sugar release for two different biological systems.

The Air Traffic Control Environment in 2010

DOT National Transportation Integrated Search

1989-10-01

This document has been prepared to assist the Airspace Control Planning Panel by describing the broad outline and general features of the environment for air traffic control functions anticipated in the 2010 timeframe. The description is based on est...

The Third International Conference: Tokyo

ERIC Educational Resources Information Center

Kidd, J. Roby

1972-01-01

The Tokyo Conference featured more of an acceptance of established theory, agreement on broad programs, and consolidation of approaches. It also made clear the fact that governments now take, and expect to take a much greater responsibility for adult education. (Author/RK)

The Revised Child Anxiety and Depression Scale-Short Version: Scale Reduction via Exploratory Bifactor Modeling of the Broad Anxiety Factor

ERIC Educational Resources Information Center

Ebesutani, Chad; Reise, Steven P.; Chorpita, Bruce F.; Ale, Chelsea; Regan, Jennifer; Young, John; Higa-McMillan, Charmaine; Weisz, John R.

2012-01-01

Using a school-based (N = 1,060) and clinic-referred (N = 303) youth sample, the authors developed a 25-item shortened version of the Revised Child Anxiety and Depression Scale (RCADS) using Schmid-Leiman exploratory bifactor analysis to reduce client burden and administration time and thus improve the transportability characteristics of this…

Large quasi-circular features beneath frost on Triton

NASA Technical Reports Server (NTRS)

Helfenstein, Paul; Veverka, Joseph; Mccarthy, Derek; Lee, Pascal; Hillier, John

1992-01-01

Specially processed Voyager 2 images of Neptune's largest moon, Triton, reveal three large quasi-circular features ranging in diameter from 280 to 935 km within Triton's equatorial region. The largest of these features contains a central irregularly shaped area of comparatively low albedo about 380 km in diameter, surrounded by crudely concentric annuli of higher albedo materials. None of the features exhibit significant topographic expression, and all appear to be primarily albedo markings. The features are located within a broad equatorial band of anomalously transparent frost that renders them nearly invisible at the large phase angles (alpha greater than 90 deg) at which Voyager obtained its highest resolution coverage of Triton. The features can be discerned at smaller phase angles (alpha = 66 deg) at which the frost only partially masks underlying albedo contrasts. The origin of the features is uncertain but may have involved regional cryovolcanic activity.

Lensing corrections to features in the angular two-point correlation function and power spectrum

DOE Office of Scientific and Technical Information (OSTI.GOV)

LoVerde, Marilena; Department of Physics, Columbia University, New York, New York 10027; Hui, Lam

2008-01-15

It is well known that magnification bias, the modulation of galaxy or quasar source counts by gravitational lensing, can change the observed angular correlation function. We investigate magnification-induced changes to the shape of the observed correlation function w({theta}), and the angular power spectrum C{sub l}, paying special attention to the matter-radiation equality peak and the baryon wiggles. Lensing effectively mixes the correlation function of the source galaxies with that of the matter correlation at the lower redshifts of the lenses distorting the observed correlation function. We quantify how the lensing corrections depend on the width of the selection function, themore » galaxy bias b, and the number count slope s. The lensing correction increases with redshift and larger corrections are present for sources with steep number count slopes and/or broad redshift distributions. The most drastic changes to C{sub l} occur for measurements at high redshifts (z > or approx. 1.5) and low multipole moment (l < or approx. 100). For the source distributions we consider, magnification bias can shift the location of the matter-radiation equality scale by 1%-6% at z{approx}1.5 and by z{approx}3.5 the shift can be as large as 30%. The baryon bump in {theta}{sup 2}w({theta}) is shifted by < or approx. 1% and the width is typically increased by {approx}10%. Shifts of > or approx. 0.5% and broadening > or approx. 20% occur only for very broad selection functions and/or galaxies with (5s-2)/b > or approx. 2. However, near the baryon bump the magnification correction is not constant but is a gently varying function which depends on the source population. Depending on how the w({theta}) data is fitted, this correction may need to be accounted for when using the baryon acoustic scale for precision cosmology.« less

Use of large-scale atmospheric energetics for understanding the dynamics of contrasting Indian summer monsoon rainfall in different years

NASA Astrophysics Data System (ADS)

Dutta, Somenath; Narkhedkar, Sanjay G.; Mukhopadhyay, Parthasarathi; Yadav, Mamta; Sunitha Devi

2018-06-01

An attempt has been made to understand the dynamics of contrasting Indian summer monsoon rainfall (ISMR) in different years during 1979-2017, from large-scale atmospheric energetics aspects. Daily values of eddy and zonal available potential energy (APE), their generation, eddy and zonal kinetic energy (KE), conversions of zonal KE and eddy APE to eddy KE, and conversions of zonal APE to zonal KE and eddy APE were computed over the region bounded by 65°E-95°E and 5°N-35°N during the period 1 May to 30 September for 39 years (1979-2017), using daily ECMWF reanalyzed atmospheric data at 0.125° × 0.125° resolution (3 components of wind and temperature). ISMR was classified into three categories, viz., deficient and below normal, normal and above normal and excess. The daily anomaly of these energetics parameters in each of these years was computed using jackknife method and then the composite of the daily anomalies of these parameters constructed for the years with the above-mentioned three categories of ISMR. The following salient features emerge from this study: Analysis of composite anomaly shows that in case of excess and above normal (below normal and deficient) ISMR, C(A Z , K Z) was less (more) than normal. In case of excess and above normal (below normal and deficient) ISMR, C(A E , K E) was more (less) than normal. Broadly, C(A Z , A E) was more than normal in the years with deficient and below normal ISMR, whereas it was less than normal for years with excess and above normal ISMR. Broadly, G(A Z) was below normal for the years with above normal and excess ISMR, whereas it was above normal for the years with below normal and deficient ISMR. Total kinetic energy and total conversion to eddy kinetic energy was above normal for the years with above normal and excess ISMR.

A Mid-Latitude Geomorphologic Map of Titan

NASA Astrophysics Data System (ADS)

Lopes, Rosaly M. C.; Malaska, Michael; Schoenfeld, Ashley; Solomonidou, Anezina; Birch, Samuel; Hayes, Alexander; Williams, David A.; Janssen, Michael A.; Le Gall, Alice; Turtle, Elizabeth P.; Radebaugh, Jani; Cassini RADAR Team

2016-10-01

We investigated the geologic history of Titan through mapping and analyzing the distribution of observed geomorphic features using a combination of Cassini data collected by RADAR, VIMS, and ISS. Determining the spatial and superposition relationships between geomorphologic units on Titan leads to an understanding of the likely time evolution of the landscape and gives insight into the process interactions that drive its evolution. We have used all available datasets to extend the mapping initially done by Lopes et al. [1]. We now have the mid-latitudes (60N to 60S) of Titan mapped at 1:800,000 scale in all areas covered by Synthetic Aperture Radar (SAR). A map of the polar regions has been done by Birch et al. [2]. For the mid-latitudes, we have defined five broad classes of terrains following Malaska et al. [3], largely based on prior mapping [1]. These broad classes are: craters, hummocky/mountainous, labyrinth, plains, and dunes. We have found that the hummocky/mountainous terrains are the oldest units on the surface and appear radiometrically cold, indicating icy materials [5]. Dunes are the youngest units and appear radiometrically warm, indicating organic sediments. VIMS analysis shows that compositional variations can also exist within the same class of unit [6, 7]. Future work aims to combine the polar maps of Birch et al. [2] with the mid-latitude maps presented here and harmonize the units at the 60 degrees boundaries. We also plan to extend the map in regions not covered by SAR to produce a 1:1,500,000 scale map compatible with USGS standards.References: [1] Lopes, R.M.C., et al.: Icarus, 205, 540-588, 2010; [2] Birch et al., submitted to Icarus. [3] Malaska, M., et al.: Icarus, 270, 130-161, 2016; [4] Barnes, J., et al.: Pl. Scie., 2:1, 2013; [5] Janssen et al., 2016 Icarus 270, 443-459, 2016. [6] Solomonidou, A., et al. : DPS abstract, 2016. [7] Lopes, R.M.C., et al, Icarus, 270, 162-182, 2016.

Developmental Assessment with Young Children: A Systematic Review of Battelle Studies

ERIC Educational Resources Information Center

Cunha, Ana C. B.; Berkovits, Michelle D.; Albuquerque, Karolina A.

2018-01-01

Developmental assessment scales are important tools for determining developmental delays and planning preventive interventions. One broad assessment scale used to evaluate child development is the Battelle Developmental Inventories (BDIs). The BDI-2 has a standardized version in English with good psychometric properties and a translated version in…

Application of large-scale, multi-resolution watershed modeling framework using the Hydrologic and Water Quality System (HAWQS)

USDA-ARS?s Scientific Manuscript database

In recent years, large-scale watershed modeling has been implemented broadly in the field of water resources planning and management. Complex hydrological, sediment, and nutrient processes can be simulated by sophisticated watershed simulation models for important issues such as water resources all...

WATER QUALITY VULNERABILITY IN THE OZARKS USING LANDSCAPE ECOLOGY METRICS: UPPER WHITE RIVER BROWSER (V2.0)

EPA Science Inventory

The principal focus of this project is the mapping and interpretation of landscape scale (i.e., broad scale) ecological metrics among contributing watersheds of the Upper White River, and the development of geospatial models of water quality vulnerability for several suspected no...

USING LANDSCAPE ECOLOGY AND PARTIAL LEAST SQUARES PREDICTIONS TO MAP WATERSHEDS THAT ARE VULNERABLE TO NON-POINT SOURCE POLLUTION

EPA Science Inventory

The U.S. Environmental Protection Agency's Office of Research and Development have mapped and interpreted landscape-scale (i.e., broad scale) ecological metrics among watersheds in the upper White River watershed, producing the first geospatial models of water quality vulnerabili...

Comparisons of seismic and electromagnetic structures of the MELT area

NASA Astrophysics Data System (ADS)

Evans, R. L.; Hirth, G.; Forsyth, D.; Baba, K.; Chave, A.

2003-04-01

Both seismic and electromagnetic (EM) models from the MELT experiment show similar broad scale features in the mantle beneath the Southern EPR. In all EM models, the conductivity in the upper 50-60˜km is considerably higher to the west of the ridge than to the east. Similarly, seismic models of short period Love waves are asymmetric in velocity structure, with slower velocities to the west of the ridge within the upper 60˜km. Body wave data suggest a similar asymmetry, although the depth extent is not as well defined. West of the ridge, both the higher conductivities and lower velocities have been attributed to the presence of a small melt fraction, although the anomalous regions estimated from different techniques do not entirely agree. To the east, there is a rapid increase in resistivity and S-wave velocity, indicating that within 25˜km of the axis the mantle above 70˜km is both dry and melt-free. Further away from the ridge, the boundary between a conductive asthenospheric mantle and a resistive overlying mantle flattens, at a depth around 60-80˜km. Rayleigh wave inversions also show fairly flat velocity contours with a broad minimum centered at 60-80˜km. Both of these features are consistent with a transition from dry to damp mantle. Also away from the ridge, EM data, shear-wave splitting, and Rayleigh waves all require an azimuthally anisotropic mantle consistent with the a-axis of olivine being preferentially oriented horizontally and perpendicular to the ridge. Anisotropy in EM data suggests damp mantle conditions in the 100-200˜km depth range, with enhanced conduction along the a-axis of olivine. Rayleigh waves are most sensitive to shallower structure and require anisotropy in the upper 70˜km. In the uppermost 40˜km, the most conductive and lowest velocity regions are close to the axis but offset 5-10˜km to the west. Some anisotropic inversions recover a vertically conductive feature that could be interpreted as a few percent melt distributed in vertically aligned channels or tubes. However, modeling of seismic data rule out the presence of a vertical melt bearing channel larger than 5˜km wide with a velocity reduction of 0.5˜kms-1 (3-4% melt fraction). This apparent discrepancy may provide clues as to how melt is distributed.

GIS-based rapid-assessment of bighead carp Hypophthalmichthys nobilis (Richardson, 1845) suitability in reservoirs

USGS Publications Warehouse

Long, James M.; Liang, Yu; Shoup, Daniel E.; Dzialowski, Andrew R.; Bidwell, Joseph R.

2014-01-01

Broad-scale niche models are good for examining the potential for invasive species occurrences, but can fall short in providing managers with site-specific locations for monitoring. Using Oklahoma as an example, where invasive bighead carp (Hypophthalmichthys nobilis) are established in certain reservoirs, but predicted to be widely distributed based on broad-scale niche models, we cast bighead carp reproductive ecology in a site-specific geospatial framework to determine their potential establishment in additional reservoirs. Because bighead carp require large, long free-flowing rivers with suitable hydrology for reproduction but can persist in reservoirs, we considered reservoir tributaries with mean annual daily discharge ≥8.5 cubic meters per second (m3 /s) and quantified the length of their unimpeded portions. In contrast to published broad-scale niche models that identified nearly the entire state as susceptible to invasion, our site-specific models showed that few reservoirs in Oklahoma (N = 9) were suitable for bighead carp establishment. Moreover, this method was rapid and identified sites that could be prioritized for increased study or scrutiny. Our results highlight the importance of considering the environmental characteristics of individual sites, which is often the level at which management efforts are implemented when assessing susceptibility to invasion.