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Sample records for broomcorn millet panicum

  1. Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasia

    PubMed Central

    Hunt, Harriet V; Campana, Michael G; Lawes, Matthew C; Park, Yong-Jin; Bower, Mim A; Howe, Christopher J; Jones, Martin K

    2011-01-01

    Broomcorn millet (Panicum miliaceum L.) is one of the world's oldest cultivated cereals, with several lines of recent evidence indicating that it was grown in northern China from at least 10 000 cal bp. Additionally, a cluster of archaeobotanical records of P. miliaceum dated to at least 7000 cal bp exists in eastern Europe. These two centres of early records could either represent independent domestications or cross-continental movement of this cereal that would predate that of any other crop by some 2 millennia. Here, we analysed genetic diversity among 98 landrace accessions from across Eurasia using 16 microsatellite loci, to explore phylogeographic structure in the Old World range of this historically important crop. The major genetic split in the data divided the accessions into an eastern and a western grouping with an approximate boundary in northwestern China. A substantial number of accessions belonging to the ‘western’ genetic group were also found in northeastern China. Further resolution subdivided the western and eastern genepools into 2 and 4 clusters respectively, each showing clear geographic patterning. The genetic data are consistent with both the single and multiple domestication centre hypotheses and add specific detail to what these hypotheses would entail regarding the spread of broomcorn millet. Discrepancies exist between the predictions from the genetic data and the current archaeobotanical record, highlighting priorities for investigation into early farming in Central Asia. PMID:22004244

  2. Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers

    PubMed Central

    Liu, Minxuan; Xu, Yue; He, Jihong; Zhang, Shuang; Wang, Yinyue; Lu, Ping

    2016-01-01

    Broomcorn millet (Panicum miliaceum L.), one of the first domesticated crops, has been grown in Northern China for at least 10,000 years. The species is presently a minor crop, and evaluation of its genetic diversity has been very limited. In this study, we analyzed the genetic diversity of 88 accessions of broomcorn millet collected from various provinces of China. Amplification with 67 simple sequence repeat (SSR) primers revealed moderate levels of diversity in the investigated accessions. A total of 179 alleles were detected, with an average of 2.7 alleles per locus. Polymorphism information content and expected heterozygosity ranged from 0.043 to 0.729 (mean = 0.376) and 0.045 to 0.771 (mean = 0.445), respectively. Cluster analysis based on the unweighted pair group method of mathematical averages separated the 88 accessions into four groups at a genetic similarity level of 0.633. A genetic structure assay indicated a close correlation between geographical regions and genetic diversity. The uncovered information will be valuable for defining gene pools and developing breeding programs for broomcorn millet. Furthermore, the millet-specific SSR markers developed in this study should serve as useful tools for assessment of genetic diversity and elucidation of population structure in broomcorn millet. PMID:26985894

  3. Reticulate evolution in Panicum (Poaceae): the origin of tetraploid broomcorn millet, P. miliaceum

    PubMed Central

    Hunt, Harriet V.; Badakshi, Farah; Romanova, Olga; Howe, Christopher J.; Jones, Martin K.; Heslop-Harrison, J. S. Pat

    2014-01-01

    Panicum miliaceum (broomcorn millet) is a tetraploid cereal, which was among the first domesticated crops, but is now a minor crop despite its high water use efficiency. The ancestors of this species have not been determined; we aimed to identify likely candidates within the genus, where phylogenies are poorly resolved. Nuclear and chloroplast DNA sequences from P. miliaceum and a range of diploid and tetraploid relatives were used to develop phylogenies of the diploid and tetraploid species. Chromosomal in situ hybridization with genomic DNA as a probe was used to characterize the genomes in the tetraploid P. miliaceum and a tetraploid accession of P. repens. In situ hybridization showed that half the chromosomes of P. miliaceum hybridized more strongly with labelled genomic DNA from P. capillare, and half with labelled DNA from P. repens. Genomic DNA probes differentiated two sets of 18 chromosomes in the tetraploid P. repens. Our phylogenetic data support the allotetraploid origin of P. miliaceum, with the maternal ancestor being P. capillare (or a close relative) and the other genome being shared with P. repens. Our P. repens accession was also an allotetraploid with two dissimilar but closely related genomes, the maternal genome being similar to P. sumatrense. Further collection of Panicum species, particularly from the Old World, is required. It is important to identify why the water-efficient P. miliaceum is now of minimal importance in agriculture, and it may be valuable to exploit the diversity in this species and its ancestors. PMID:24723408

  4. Assessment of genetic diversity in broomcorn millet (Panicum miliaceum L.) using SSR markers.

    PubMed

    Hu, Xingyu; Wang, Jianfei; Lu, Ping; Zhang, Hongsheng

    2009-08-01

    The genetic diversity of 118 accessions of broomcorn millet (Panicum miliaceum L.), collected from various ecological areas, was analyzed. Using 46 SSR (Simple Sequence Repeat) polymorphic markers from rice, wheat, oat and barley, a total of 226 alleles were found, which exhibited moderate level of diversity. The number of alleles per primer ranged from two to nine, with an average of 4.91. The range of polymorphism information content (PIC) was 0.284-0.980 (average, 0.793). The expected heterozygosity (He) varied from 0.346 to 0.989, with an average of 0.834. The average coefficient of the genetic similarity of SSR markers among the 118 accessions was 0.609, and it ranged from 0.461 to 0.851. The UPGMA (Unweight Pair Group Method with Arithmetic Mean) clustering analysis at the genetic similarity value of 0.609 grouped the 118 accessions into five groups. Mantel test meant that geographical origin and genetic distance presented positive correlation. The clustering results were consistent with known information on ecological growing areas. The genetic similarity coefficient of the accessions in the Loess Plateau ecotype was significantly lower than those in the other ecotypes. It indicates that the highest level of genetic diversity occurred in the Loess Plateau, which is probably the original site of Panicum miliaceum. PMID:19683672

  5. Molecular Basis of the Waxy Endosperm Starch Phenotype in Broomcorn Millet (Panicum miliaceum L.)

    PubMed Central

    Hunt, Harriet V.; Denyer, Kay; Packman, Len C.; Jones, Martin K.; Howe, Christopher J.

    2010-01-01

    Waxy varieties of the tetraploid cereal broomcorn millet (Panicum miliaceum L.) have endosperm starch granules lacking detectable amylose. This study investigated the basis of this phenotype using molecular and biochemical methods. Iodine staining of starch granules in 72 plants from 38 landrace accessions found 58 nonwaxy and 14 waxy phenotype plants. All waxy types were in plants from Chinese and Korean accessions, a distribution similar to that of the waxy phenotype in other cereals. Granule-bound starch synthase I (GBSSI) protein was present in the endosperm of both nonwaxy and waxy individuals, but waxy types had little or no granule-bound starch synthase activity compared with the wild types. Sequencing of the GBSSI (Waxy) gene showed that this gene is present in two different forms (L and S) in P. miliaceum, which probably represent homeologues derived from two distinct diploid ancestors. Protein products of both these forms are present in starch granules. We identified three polymorphisms in the exon sequence coding for mature GBSSI peptides. A 15-bp deletion has occurred in the S type GBSSI, resulting in the loss of five amino acids from glucosyl transferase domain 1 (GTD1). The second GBSSI type (L) shows two sequence polymorphisms. One is the insertion of an adenine residue that causes a reading frameshift, and the second causes a cysteine–tyrosine amino acid polymorphism. These mutations appear to have occurred in parallel from the ancestral allele, resulting in three GBSSI-L alleles in total. Five of the six possible genotype combinations of the S and L alleles were observed. The deletion in the GBSSI-S gene causes loss of protein activity, and there was 100% correspondence between this deletion and the waxy phenotype. The frameshift mutation in the L gene results in the loss of L-type protein from starch granules. The L isoform with the tyrosine residue is present in starch granules but is nonfunctional. This loss of function may result from the

  6. De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development.

    PubMed

    Yue, Hong; Wang, Le; Liu, Hui; Yue, Wenjie; Du, Xianghong; Song, Weining; Nie, Xiaojun

    2016-01-01

    Broomcorn millet (Panicum miliaceum L.) is one of the world's oldest cultivated cereals, which is well-adapted to extreme environments such as drought, heat, and salinity with an efficient C4 carbon fixation. Discovery and identification of genes involved in these processes will provide valuable information to improve the crop for meeting the challenge of global climate change. However, the lack of genetic resources and genomic information make gene discovery and molecular mechanism studies very difficult. Here, we sequenced and assembled the transcriptome of broomcorn millet using Illumina sequencing technology. After sequencing, a total of 45,406,730 and 51,160,820 clean paired-end reads were obtained for two genotypes Yumi No. 2 and Yumi No. 3. These reads were mixed and then assembled into 113,643 unigenes, with the length ranging from 351 to 15,691 bp, of which 62,543 contings could be assigned to 315 gene ontology (GO) categories. Cluster of orthologous groups and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses assigned could map 15,514 unigenes into 202 KEGG pathways and 51,020 unigenes to 25 COG categories, respectively. Furthermore, 35,216 simple sequence repeats (SSRs) were identified in 27,055 unigene sequences, of which trinucleotides were the most abundant repeat unit, accounting for 66.72% of SSRs. In addition, 292 differentially expressed genes were identified between the two genotypes, which were significantly enriched in 88 GO terms and 12 KEGG pathways. Finally, the expression patterns of four selected transcripts were validated through quantitative reverse transcription polymerase chain reaction analysis. Our study for the first time sequenced and assembled the transcriptome of broomcorn millet, which not only provided a rich sequence resource for gene discovery and marker development in this important crop, but will also facilitate the further investigation of the molecular mechanism of its favored agronomic traits and beyond. PMID

  7. De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development

    PubMed Central

    Yue, Hong; Wang, Le; Liu, Hui; Yue, Wenjie; Du, Xianghong; Song, Weining; Nie, Xiaojun

    2016-01-01

    Broomcorn millet (Panicum miliaceum L.) is one of the world’s oldest cultivated cereals, which is well-adapted to extreme environments such as drought, heat, and salinity with an efficient C4 carbon fixation. Discovery and identification of genes involved in these processes will provide valuable information to improve the crop for meeting the challenge of global climate change. However, the lack of genetic resources and genomic information make gene discovery and molecular mechanism studies very difficult. Here, we sequenced and assembled the transcriptome of broomcorn millet using Illumina sequencing technology. After sequencing, a total of 45,406,730 and 51,160,820 clean paired-end reads were obtained for two genotypes Yumi No. 2 and Yumi No. 3. These reads were mixed and then assembled into 113,643 unigenes, with the length ranging from 351 to 15,691 bp, of which 62,543 contings could be assigned to 315 gene ontology (GO) categories. Cluster of orthologous groups and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses assigned could map 15,514 unigenes into 202 KEGG pathways and 51,020 unigenes to 25 COG categories, respectively. Furthermore, 35,216 simple sequence repeats (SSRs) were identified in 27,055 unigene sequences, of which trinucleotides were the most abundant repeat unit, accounting for 66.72% of SSRs. In addition, 292 differentially expressed genes were identified between the two genotypes, which were significantly enriched in 88 GO terms and 12 KEGG pathways. Finally, the expression patterns of four selected transcripts were validated through quantitative reverse transcription polymerase chain reaction analysis. Our study for the first time sequenced and assembled the transcriptome of broomcorn millet, which not only provided a rich sequence resource for gene discovery and marker development in this important crop, but will also facilitate the further investigation of the molecular mechanism of its favored agronomic traits and beyond. PMID

  8. Waxy-phenotype evolution in the allotetraploid cereal broomcorn millet: Mutations at the GBSSI locus in their functional and phylogenetic context

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Waxy mutants, in which endosperm starch contains ~100% amylopectin rather than the wild-type composition of ~70% amylopectin and ~30% amylose, occur in many domesticated cereals. The cultivation of waxy varieties of broomcorn (proso) millet (Panicum miliaceum L.) is restricted to east Asia, where t...

  9. Waxy Phenotype Evolution in the Allotetraploid Cereal Broomcorn Millet: Mutations at the GBSSI Locus in Their Functional and Phylogenetic Context

    PubMed Central

    Hunt, Harriet V.; Moots, Hannah M.; Graybosch, Robert A.; Jones, Huw; Parker, Mary; Romanova, Olga; Jones, Martin K.; Howe, Christopher J.; Trafford, Kay

    2013-01-01

    Waxy mutants, in which endosperm starch contains ∼100% amylopectin rather than the wild-type composition of ∼70% amylopectin and ∼30% amylose, occur in many domesticated cereals. The cultivation of waxy varieties is concentrated in east Asia, where there is a culinary preference for glutinous-textured foods that may have developed from ancient food processing traditions. The waxy phenotype results from mutations in the GBSSI gene, which catalyzes amylose synthesis. Broomcorn or proso millet (Panicum miliaceum L.) is one of the world’s oldest cultivated cereals, which spread across Eurasia early in prehistory. Recent phylogeographic analysis has shown strong genetic structuring that likely reflects ancient expansion patterns. Broomcorn millet is highly unusual in being an allotetraploid cereal with fully waxy varieties. Previous work characterized two homeologous GBSSI loci, with multiple alleles at each, but could not determine whether both loci contributed to GBSSI function. We first tested the relative contribution of the two GBSSI loci to amylose synthesis and second tested the association between GBSSI alleles and phylogeographic structure inferred from simple sequence repeats (SSRs). We evaluated the phenotype of all known GBSSI genotypes in broomcorn millet by assaying starch composition and protein function. The results showed that the GBSSI-S locus is the major locus controlling endosperm amylose content, and the GBSSI-L locus has strongly reduced synthesis capacity. We genotyped 178 individuals from landraces from across Eurasia for the 2 GBSSI and 16 SSR loci and analyzed phylogeographic structuring and the geographic and phylogenetic distribution of GBSSI alleles. We found that GBSSI alleles have distinct spatial distributions and strong associations with particular genetic clusters defined by SSRs. The combination of alleles that results in a partially waxy phenotype does not exist in landrace populations. Our data suggest that broomcorn millet

  10. [Comparison of growth and field microclimate characteristics of broomcorn millet under different fertilization conditions].

    PubMed

    Zhang, Pan-pan; Zhou, Yu; Song, Hui; Qiao, Zhi-jun; Wang, Hai-gang; Zheng, Dian-feng; Feng, Bai-li

    2015-02-01

    A field experiment with two broomcorn millet varieties Longmi 8 (strong drought-resistant variety) and Jinmi 4 (drought-sensitive variety) was conducted to compare their differences in growth, field microclimate and photosynthetic capacity from anthesis to maturity under different fertility conditions. The results showed that, fertilization decreased canopy temperature, air temperature, soil temperature, illumination, but improved the relative humidity among broomcorn millet plants compared with the non-fertilization treatment. With an increase of the fertilizer level, the plant height, SPAD, LAI, net photosynthetic rate, transpiration rate, stomatal conductance, intercellular CO2 concentration in broomcorn millet showed an increasing trend, which of the high fertilization treatment were 9.2%, 15.1%, 56.6%, 17.8%, 24.6%, 14.2%, 29.7% higher than those of non-fertilization treatment, respectively. Compared with Jinmi 4, Longmi 8 showed a cold wet characteristic, with lower canopy temperature, air temperature, soil temperature; illumination, and higher plant height, LAI, SPAD and relative humidity during grain filling. Moreover, each photosynthetic index of Longmi 8 slowly decreased and extended the period of leaf photosynthetic function so as to accumulate more photosynthetic products. PMID:26094463

  11. [Effects of mulching patterns on soil water, broomcorn millet growth, photosynthetic charac- teristics and yield in the dryland of Loess Plateau in China].

    PubMed

    Su, Wang; Zhang, Yan-Ping; Qu, Yang; Li, Cui; Miao, Jia-Yuan; Gao, Xiao-Li; Liu, Jian-Hua; Feng, Bai-Li

    2014-11-01

    The objective of this study was to explore the effects of mulching patterns on soil water, growth, photosynthetic characteristics, grain yield and water use efficiency (WUE) of broomcorn millet in the dryland of Loess Plateau in China. In a three-year field experiment from 2011 to 2013, we compared four different mulching patterns with traditional plat planting (no mulching) as the control (CK). The mulching patterns included W ridge covered with common plastic film + intredune covered with straw (SG), common ridge covered with common plastic film + intredune covered with straw (LM), double ridges covered with common plastic film + intredune covered with straw (QM), and the traditional plat planting covered with straw (JG). The results showed that the soil water storage in 0-100 cm layer was significantly higher in all mulching patterns than in CK, particularly in SG then followed by LM, QM and JG, and the differences among the mulching patterns reached a significant level at the different growth stages of broomcorn millet. Among all mulching patterns, SG had the greatest effect on the growth and photosynthesis of broomcorn millet, respectively increasing the yield and WUE by 55.9% and 64.9% over CK, and the differences among the mulching patterns also reached a significant level. Therefore, SG was recommended as an efficient planting pattern for broomcorn millet production in the dryland of Loess Plateau in China.

  12. Quality evaluation of little millet (Panicum miliare) incorporated functional bread.

    PubMed

    Mannuramath, Mamata; Yenagi, Nirmala; Orsat, Valerie

    2015-12-01

    The study was undertaken with the objective of formulating a fiber enriched functional bread by incorporating little millet flour (LMF). Wheat flour (WF) was replaced with LMF at various proportions (10, 30 and 50%) in the bread preparation. The developed breads were evaluated for physical, sensory and nutritional characteristics. The loaf volume, weight, height and specific volume were decreased significantly with increased levels of LMF. The wheat bread (control), 10 and 30 % percent incorporation of LMF did not show significance difference in the sensory scores. Control and bread with 30 % incorporation of LMF were evaluated further for nutritional characteristics. There was an increase in the percentage of micronutrients such as Iron (94%), Zinc (29%), Copper (70%), Phosphorus (28%) and also fiber (19%) which improved the nutritional value of the wheat bread when substituted with LMF. The incorporation of LMF at 30% level in bread can be considered as a functional and nutritional food choice for the management of diet related metabolic disorders. PMID:26604415

  13. Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago

    PubMed Central

    Lu, Houyuan; Zhang, Jianping; Liu, Kam-biu; Wu, Naiqin; Li, Yumei; Zhou, Kunshu; Ye, Maolin; Zhang, Tianyu; Zhang, Haijiang; Yang, Xiaoyan; Shen, Licheng; Xu, Deke; Li, Quan

    2009-01-01

    The origin of millet from Neolithic China has generally been accepted, but it remains unknown whether common millet (Panicum miliaceum) or foxtail millet (Setaria italica) was the first species domesticated. Nor do we know the timing of their domestication and their routes of dispersal. Here, we report the discovery of husk phytoliths and biomolecular components identifiable solely as common millet from newly excavated storage pits at the Neolithic Cishan site, China, dated to between ca. 10,300 and ca. 8,700 calibrated years before present (cal yr BP). After ca. 8,700 cal yr BP, the grain crops began to contain a small quantity of foxtail millet. Our research reveals that the common millet was the earliest dry farming crop in East Asia, which is probably attributed to its excellent resistance to drought. PMID:19383791

  14. Content and quality of protein in proso millet (Panicum miliaceum L.) varieties.

    PubMed

    Kalinova, Jana; Moudry, Jan

    2006-03-01

    Proso millet belongs to the oldest cereals that human is using. Eight varieties of proso millet were cultivated in Ceske Budejovice from 1998 to 2000 and Cerveny Dvur from 1999 to 2000. The crude protein content was determined according to Kjehladl method and amino acid content was determined chromatographically after acid and oxidative acid hydrolysis. Although the protein content of proso (11.6% of dry matter) was similar to wheat, the grain of proso was significant richer in essential amino acids (leucine, isoleucine, methionine) then wheat. Hence, the protein quality of proso (Essential Amino Acid Index) was higher (51%) compared to wheat. The proso grain contained about 3.3 g kg(-1) of the limiting amino acid-lysine. Significant differences in protein and its quality were found among the evaluated proso varieties. The varieties Toldanskoe and Lipetskoe were the most different from the others in protein and amino acid content and Amino Acid Score of individual acids. They had the lowest content and quality of protein. The seed coat of these varieties was red. The amino acid and protein content was significantly influenced by weather during the year. Dry conditions caused an increase of protein but its quality was decreased.

  15. Uptake of Germanium and Rare Earth Elements (La, Gd, Er, Nd) by white mustard (Brassica alba L.) and common millet (Panicum milliaceum L.) as affected by Phosphorus Nutrition

    NASA Astrophysics Data System (ADS)

    Zill, Juliane; Wiche, Oliver

    2015-04-01

    The effect of phosphate nutrition is important due to the future usage of fertilizer treatment in phytomining experiments e.g. in accumulation of the economically important rare earth elements (REE). It is expected that the trivalent charge of REE will result in complexation with phosphate and REEs could be immobilized and not further bioavailable for plants which would cause losses of REE concentration in biomass. To investigate this influence on lanthanum, neodymium, gadolinium and erbium two plant species Brassica alba (white mustard) and Panicum miliaceum (common millet) were cultured in a greenhouse study. The plants were cultivated onto two different substrates and were poured with modified REE and phosphate solutions within an eight-week period. The concentrations of REE in soil, soil solution and plant samples were determined by inductively coupled plasma-mass spectrometry (ICP-MS). The results show an increase of concentration of REE with increasing levels of element solution applied for both species. REE accumulations are elevated in roots and decrease in the order of roots> leaves> stem> fruit/blossom. Brassica accumulated more REE in root whereas Panicum showed higher REE concentrations in leaves. Exposure to increased phosphate addition did not significantly change the concentrations of REE in both plant species yet the REE concentrations in leaves slightly decreased with increasing phosphate addition. For root and stem no precise trend could be determined. It is most likely that REEs precipitate with phosphate on root surfaces and in the roots. The bioavailability of REE to plants is affected by complexation processes of REEs with phosphate in the rhizosphere. The results indicate that phosphate application plays an important role on REE uptake by roots and accumulation in different parts of a plant and it might have an influence on translocation of REE within the plant.

  16. Early millet use in northern China

    PubMed Central

    Yang, Xiaoyan; Wan, Zhiwei; Perry, Linda; Lu, Houyuan; Wang, Qiang; Zhao, Chaohong; Li, Jun; Xie, Fei; Yu, Jincheng; Cui, Tianxing; Wang, Tao; Li, Mingqi; Ge, Quansheng

    2012-01-01

    It is generally understood that foxtail millet and broomcorn millet were initially domesticated in Northern China where they eventually became the dominant plant food crops. The rarity of older archaeological sites and archaeobotanical work in the region, however, renders both the origins of these plants and their processes of domestication poorly understood. Here we present ancient starch grain assemblages recovered from cultural deposits, including carbonized residues adhering to an early pottery sherd as well as grinding stone tools excavated from the sites of Nanzhuangtou (11.5–11.0 cal kyBP) and Donghulin (11.0–9.5 cal kyBP) in the North China Plain. Our data extend the record of millet use in China by nearly 1,000 y, and the record of foxtail millet in the region by at least two millennia. The patterning of starch residues within the samples allow for the formulation of the hypothesis that foxtail millets were cultivated for an extended period of two millennia, during which this crop plant appears to have been undergoing domestication. Future research in the region will help clarify the processes in place. PMID:22355109

  17. Early Mixed Farming of Millet and Rice 7800 Years Ago in the Middle Yellow River Region, China

    PubMed Central

    Zhang, Jianping; Lu, Houyuan; Gu, Wanfa; Wu, Naiqin; Zhou, Kunshu; Hu, Yayi; Xin, Yingjun; Wang, Can

    2012-01-01

    The Peiligang Culture (9000-7000 cal. yr BP) in the Middle Yellow River region, North China, has long been considered representative of millet farming. It is still unclear, however, if broomcorn millet or foxtail millet was the first species domesticated during the Peiligang Culture. Furthermore, it is also unknown whether millet was cultivated singly or together with rice at the same period. In this study, phytolith analysis of samples from the Tanghu archaeological site reveals early crop information in the Middle Yellow River region, China. Our results show that broomcorn millet was the early dry farming species in the Peiligang Culture at 7800 cal. yr BP, while rice cultivation took place from 7800 to 4500 cal. yr BP. Our data provide new evidence of broomcorn millet and rice mixed farming at 7800 cal. yr BP in the Middle Yellow River region, which has implications for understanding the domestication process of the two crops, and the formation and continuance of the Ancient Yellow River Civilization. PMID:23284907

  18. Genetic diversity and genomic resources available for the small millet crops to accelerate a New Green Revolution.

    PubMed

    Goron, Travis L; Raizada, Manish N

    2015-01-01

    Small millets are nutrient-rich food sources traditionally grown and consumed by subsistence farmers in Asia and Africa. They include finger millet (Eleusine coracana), foxtail millet (Setaria italica), kodo millet (Paspalum scrobiculatum), proso millet (Panicum miliaceum), barnyard millet (Echinochloa spp.), and little millet (Panicum sumatrense). Local farmers value the small millets for their nutritional and health benefits, tolerance to extreme stress including drought, and ability to grow under low nutrient input conditions, ideal in an era of climate change and steadily depleting natural resources. Little scientific attention has been paid to these crops, hence they have been termed "orphan cereals." Despite this challenge, an advantageous quality of the small millets is that they continue to be grown in remote regions of the world which has preserved their biodiversity, providing breeders with unique alleles for crop improvement. The purpose of this review, first, is to highlight the diverse traits of each small millet species that are valued by farmers and consumers which hold potential for selection, improvement or mechanistic study. For each species, the germplasm, genetic and genomic resources available will then be described as potential tools to exploit this biodiversity. The review will conclude with noting current trends and gaps in the literature and make recommendations on how to better preserve and utilize diversity within these species to accelerate a New Green Revolution for subsistence farmers in Asia and Africa.

  19. Genetic diversity and genomic resources available for the small millet crops to accelerate a New Green Revolution

    PubMed Central

    Goron, Travis L.; Raizada, Manish N.

    2015-01-01

    Small millets are nutrient-rich food sources traditionally grown and consumed by subsistence farmers in Asia and Africa. They include finger millet (Eleusine coracana), foxtail millet (Setaria italica), kodo millet (Paspalum scrobiculatum), proso millet (Panicum miliaceum), barnyard millet (Echinochloa spp.), and little millet (Panicum sumatrense). Local farmers value the small millets for their nutritional and health benefits, tolerance to extreme stress including drought, and ability to grow under low nutrient input conditions, ideal in an era of climate change and steadily depleting natural resources. Little scientific attention has been paid to these crops, hence they have been termed “orphan cereals.” Despite this challenge, an advantageous quality of the small millets is that they continue to be grown in remote regions of the world which has preserved their biodiversity, providing breeders with unique alleles for crop improvement. The purpose of this review, first, is to highlight the diverse traits of each small millet species that are valued by farmers and consumers which hold potential for selection, improvement or mechanistic study. For each species, the germplasm, genetic and genomic resources available will then be described as potential tools to exploit this biodiversity. The review will conclude with noting current trends and gaps in the literature and make recommendations on how to better preserve and utilize diversity within these species to accelerate a New Green Revolution for subsistence farmers in Asia and Africa. PMID:25852710

  20. Sensitivity of locally naturalized Panicum species to HPPD- and ALS-inhibiting herbicides in maize.

    PubMed

    De Cauwer, B; Geeroms, T; Claerhout, S; Reheul, D; Bulcke, R

    2012-01-01

    Until recently the Panicum species Panicum schinzii Hack. (Transvaal millet), Panicum dichotomiflorum Michx. (Fall panicum) and Panicum capillare L. (Witchgrass) were completely overlooked in Belgium. Since 1970, these species have gradually spread and are now locally naturalized and abundant in and along maize fields. One of the possible raisons for their expansion in maize fields might be a lower sensitivity to postemergence herbicides acting against panicoid grasses, in particular those inhibiting 4-hydroxyphenyl pyruvate dioxygenase (HPPD) and acetolactate synthase (ALS). A dose-response pot experiment was conducted in the greenhouse to evaluate the effectiveness of five HPPD-inhibiting herbicides (sulcotrione, mesotrione, isoxaflutole, topramezone, tembotrione) and two ALS-inhibiting herbicides (nicosulfuron, foramsulfuron) for controlling Belgian populations of P. schinzii, P. dichotomiflorum and P. capillare. Shortly after sowing, half of all pots were covered with a film of activated charcoal to evaluate foliar activity of the applied herbicides. In another dose-response pot experiment, sensitivity of five local P. dichotomiflorum populations to HPPD-inhibitors and nicosulfuron was investigated. Finally, the influence of leaf stage at time of herbicide application on efficacy of topramezone and nicosulfuron for Panicum control was evaluated. Large interspecific differences in sensitivity to HPPD-inhibiting herbicides were observed. Panicum schinzii was sensitive (i.e., required a dose lower than the maximum authorized field dose to achieve 90% reduction in biomass) to tembotrione but moderately sensitive (i.e. required maximum field dose) to topramezone and poorly sensitive (i.e. required three-fold higher dose than maximum field dose) to mesotrione and sulcotrione. However, P. dichotomiflorum, a species that morphologically closely resembles P. schinzii, was sensitive to mesotrione and topramezone but moderately sensitive to tembotrione. All Panicum

  1. Five Nuclear Loci Resolve the Polyploid History of Switchgrass (Panicum virgatum L.) and Relatives

    PubMed Central

    Triplett, Jimmy K.; Wang, Yunjing; Zhong, Jinshun; Kellogg, Elizabeth A.

    2012-01-01

    Polyploidy poses challenges for phylogenetic reconstruction because of the need to identify and distinguish between homoeologous loci. This can be addressed by use of low copy nuclear markers. Panicum s.s. is a genus of about 100 species in the grass tribe Paniceae, subfamily Panicoideae, and is divided into five sections. Many of the species are known to be polyploids. The most well-known of the Panicum polyploids are switchgrass (Panicum virgatum) and common or Proso millet (P. miliaceum). Switchgrass is in section Virgata, along with P. tricholaenoides, P. amarum, and P. amarulum, whereas P. miliaceum is in sect. Panicum. We have generated sequence data from five low copy nuclear loci and two chloroplast loci and have clarified the origin of P. virgatum. We find that all members of sects. Virgata and Urvilleana are the result of diversification after a single allopolyploidy event. The closest diploid relatives of switchgrass are in sect. Rudgeana, native to Central and South America. Within sections Virgata and Urvilleana, P. tricholaenoides is sister to the remaining species. Panicum racemosum and P. urvilleanum form a clade, which may be sister to P. chloroleucum. Panicum amarum, P. amarulum, and the lowland and upland ecotypes of P. virgatum together form a clade, within which relationships are complex. Hexaploid and octoploid plants are likely allopolyploids, with P. amarum and P. amarulum sharing genomes with P. virgatum. Octoploid P. virgatum plants are formed via hybridization between disparate tetraploids. We show that polyploidy precedes diversification in a complex set of polyploids; our data thus suggest that polyploidy could provide the raw material for diversification. In addition, we show two rounds of allopolyploidization in the ancestry of switchgrass, and identify additional species that may be part of its broader gene pool. This may be relevant for development of the crop for biofuels. PMID:22719924

  2. 7 CFR 319.41a - Administrative instructions relating to entry into Guam of broomcorn, brooms, and similar articles.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related Plants Quarantine § 319.41a... chapter. (b) Shelled corn and seeds of other plants listed in § 319.41, and mature corn on the cob, may be... § 319.37-4(a). (c) Green corn on the cob may be imported into Guam without restriction under...

  3. 7 CFR 319.41a - Administrative instructions relating to entry into Guam of broomcorn, brooms, and similar articles.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related Plants Quarantine § 319.41a... chapter. (b) Shelled corn and seeds of other plants listed in § 319.41, and mature corn on the cob, may be... § 319.37-4(a). (c) Green corn on the cob may be imported into Guam without restriction under...

  4. 7 CFR 319.41a - Administrative instructions relating to entry into Guam of broomcorn, brooms, and similar articles.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related Plants Quarantine § 319.41a... chapter. (b) Shelled corn and seeds of other plants listed in § 319.41, and mature corn on the cob, may be... § 319.37-4(a). (c) Green corn on the cob may be imported into Guam without restriction under...

  5. 7 CFR 319.41a - Administrative instructions relating to entry into Guam of broomcorn, brooms, and similar articles.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related Plants Quarantine § 319.41a... chapter. (b) Shelled corn and seeds of other plants listed in § 319.41, and mature corn on the cob, may be... § 319.37-4(a). (c) Green corn on the cob may be imported into Guam without restriction under...

  6. 7 CFR 319.41a - Administrative instructions relating to entry into Guam of broomcorn, brooms, and similar articles.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related Plants Quarantine § 319.41a... chapter. (b) Shelled corn and seeds of other plants listed in § 319.41, and mature corn on the cob, may be... § 319.37-4(a). (c) Green corn on the cob may be imported into Guam without restriction under...

  7. Browntop Millet: An Emerging Weed Problem

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Browntop millet, a pasture grass used for hay and forage, has been found in late season cotton where soil residual herbicides were not applied at layby. Browntop millet may become established beneath the cotton canopy and form entanglements with cotton stalks resulting in interfence at harvest. Br...

  8. Tracing QTLs for Leaf Blast Resistance and Agronomic Performance of Finger Millet (Eleusine coracana (L.) Gaertn.) Genotypes through Association Mapping and in silico Comparative Genomics Analyses

    PubMed Central

    Ramakrishnan, M.; Antony Ceasar, S.; Duraipandiyan, V.; Vinod, K. K.; Kalpana, Krishnan; Al-Dhabi, N. A.; Ignacimuthu, S.

    2016-01-01

    Finger millet is one of the small millets with high nutritive value. This crop is vulnerable to blast disease caused by Pyricularia grisea, which occurs annually during rainy and winter seasons. Leaf blast occurs at early crop stage and is highly damaging. Mapping of resistance genes and other quantitative trait loci (QTLs) for agronomic performance can be of great use for improving finger millet genotypes. Evaluation of one hundred and twenty-eight finger millet genotypes in natural field conditions revealed that leaf blast caused severe setback on agronomic performance for susceptible genotypes, most significant traits being plant height and root length. Plant height was reduced under disease severity while root length was increased. Among the genotypes, IE4795 showed superior response in terms of both disease resistance and better agronomic performance. A total of seven unambiguous QTLs were found to be associated with various agronomic traits including leaf blast resistance by association mapping analysis. The markers, UGEP101 and UGEP95, were strongly associated with blast resistance. UGEP98 was associated with tiller number and UGEP9 was associated with root length and seed yield. Cross species validation of markers revealed that 12 candidate genes were associated with 8 QTLs in the genomes of grass species such as rice, foxtail millet, maize, Brachypodium stacei, B. distachyon, Panicum hallii and switchgrass. Several candidate genes were found proximal to orthologous sequences of the identified QTLs such as 1,4-β-glucanase for leaf blast resistance, cytokinin dehydrogenase (CKX) for tiller production, calmodulin (CaM) binding protein for seed yield and pectin methylesterase inhibitor (PMEI) for root growth and development. Most of these QTLs and their putatively associated candidate genes are reported for first time in finger millet. On validation, these novel QTLs may be utilized in future for marker assisted breeding for the development of fungal

  9. Tracing QTLs for Leaf Blast Resistance and Agronomic Performance of Finger Millet (Eleusine coracana (L.) Gaertn.) Genotypes through Association Mapping and in silico Comparative Genomics Analyses.

    PubMed

    Ramakrishnan, M; Antony Ceasar, S; Duraipandiyan, V; Vinod, K K; Kalpana, Krishnan; Al-Dhabi, N A; Ignacimuthu, S

    2016-01-01

    Finger millet is one of the small millets with high nutritive value. This crop is vulnerable to blast disease caused by Pyricularia grisea, which occurs annually during rainy and winter seasons. Leaf blast occurs at early crop stage and is highly damaging. Mapping of resistance genes and other quantitative trait loci (QTLs) for agronomic performance can be of great use for improving finger millet genotypes. Evaluation of one hundred and twenty-eight finger millet genotypes in natural field conditions revealed that leaf blast caused severe setback on agronomic performance for susceptible genotypes, most significant traits being plant height and root length. Plant height was reduced under disease severity while root length was increased. Among the genotypes, IE4795 showed superior response in terms of both disease resistance and better agronomic performance. A total of seven unambiguous QTLs were found to be associated with various agronomic traits including leaf blast resistance by association mapping analysis. The markers, UGEP101 and UGEP95, were strongly associated with blast resistance. UGEP98 was associated with tiller number and UGEP9 was associated with root length and seed yield. Cross species validation of markers revealed that 12 candidate genes were associated with 8 QTLs in the genomes of grass species such as rice, foxtail millet, maize, Brachypodium stacei, B. distachyon, Panicum hallii and switchgrass. Several candidate genes were found proximal to orthologous sequences of the identified QTLs such as 1,4-β-glucanase for leaf blast resistance, cytokinin dehydrogenase (CKX) for tiller production, calmodulin (CaM) binding protein for seed yield and pectin methylesterase inhibitor (PMEI) for root growth and development. Most of these QTLs and their putatively associated candidate genes are reported for first time in finger millet. On validation, these novel QTLs may be utilized in future for marker assisted breeding for the development of fungal

  10. Ready-to-cook millet flakes based on minor millets for modern consumer.

    PubMed

    Takhellambam, Ranjita Devi; Chimmad, Bharati V; Prkasam, Jones Nirmalnath

    2016-02-01

    There is an increased demand among the consumers for convenient foods for various reasons. Millets such as little, proso, barnyard and ragi were explored for processing into Ready-To-Cook (RTC) millet flakes to meet the needs of modern consumers. Physico-functional and nutrient composition of RTC millet flakes were evaluated against the control (oats flakes and rice flakes). Variation in physical, functional and nutrient composition were observed among the flakes. The RTC flakes of minor millets were smaller in size and density but more fragile and crisp than the commercial oats and rice flakes. Higher flake volume (16.35 ml) and lower bulk density was recorded in little millet flakes (0.15 g/ml). Good cooking properties were recorded in all millet flakes. Lowest fat content (0.40 g/100 g) was recorded in little millet flakes whereas proso millet flakes exhibited highest crude protein (14.72 g/100) and dietary fiber (21.56 g/100 g). Among the millet flakes, RTC little millet flake was most acceptable in terms of sensory quality and also exhibited good shelf life of four months at ambient temperature of 24-31 °C. The microbial load decreased during storage period and was within permissible limits. PMID:27162412

  11. Finger millet [Eleusine coracana (L.) Gaertn].

    PubMed

    Ceasar, Stanislaus Antony; Ignacimuthu, Savarimuthu

    2015-01-01

    Millets are the primary food source for millions of people in tropical regions of the world supplying mineral nutrition and protein. In this chapter, we describe an optimized protocol for the Agrobacterium-mediated transformation of finger millet variety GPU 45. Agrobacterium strain LBA4404 harboring plasmid pCAMBIA1301 which contains hygromycin phosphotransferase (hph) as selectable marker gene and β-glucuronidase (GUS) as reporter gene has been used. This protocol utilizes the shoot apex explants for the somatic embryogenesis and regeneration of finger millet after the transformation by Agrobacterium. Desiccation of explants during cocultivation helps for the better recovery of transgenic plants. This protocol is very useful for the efficient production of transgenic plants in finger millet through Agrobacterium-mediated transformation. PMID:25300836

  12. QTLs for Biomass and Developmental Traits in Switchgrass (Panicum virgatum)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genetic and genomic resources have recently been developed for the bioenergy crop switchgrass (Panicum virgatum). Despite these advances, little research has been focused on identifying genetic loci involved in natural variation of important bioenergy traits, including biomass. Quantitative trait l...

  13. The influence of phosphorus nutritional status on the uptake of germanium in Panicum miliaceum and Brassica alba

    NASA Astrophysics Data System (ADS)

    Kaden, Ute Susanne; Székely, Balázs; Wiche, Oliver

    2015-04-01

    In order to investigate the influence of the phosphorus nutritional status on the uptake of germanium (Ge) in biomass two species, white millet (Panicum miliaceum) and white mustard (Brassica alba) were grown and sampled in a greenhouse experiment. The cultivation took place on two different substrates. The plants were fertilized with different nutrient solutions which differed in their phosphate content, and artificial addition of Ge was held via the casting solution. During the test period, measurements of the pH value, electric conductivity, and phosphate content of the soil solution were conducted. To transfer germanium from soil and plant material in solution, melting and microwave digestion processes were done. The experiment showed that in both species the additional Ge supply also leads to an increasing germanium content in the aboveground plant material. The two species, however, behave differently in response to this Ge supply. Panicum miliaceum accumulates Ge in the above-ground parts of plants stem, leaf and fruit to a much greater extent than Brassica alba. On the other hand the Ge accumulation in the roots of both B. alba and P. miliaceum was very high. In case of B. alba the root content was found by far higher as compared to the other parts of the plant. The addition of phosphate in the system changes the behavior. Without additional Ge its natural uptake from soil decreases in both species but in B. alba it is more characteristic. Increasing Ge supply (for both species) leads to an increased Ge uptake, until it reaches a maximum, regardless of the presence of phosphate addition. Phosphate, on the other hand, has positive effects on Ge uptake only in the case of B. alba roots, and to a limited extent in roots of P. miliaceum. In addition, for Panicum miliaceum an increase of germanium mainly in the underground parts was achieved. A further addition of phosphate did not have a positive effect on a greater enrichment of germanium. Whereas in Brassica

  14. Suitability of Foxtail Millet (Setaria italica) and Barnyard Millet (Echinochloa frumentacea) for Development of Low Glycemic Index Biscuits.

    PubMed

    Anju, T; Sarita, S

    2010-12-01

    Millets have been neglected despite their nutritive value and therapeutic use. The present study was undertaken with the aim of preparing biscuits based on foxtail millet and barnyard millet and to evaluate their sensory quality and acceptability, nutritional value and glycemic index by comparing with biscuits made from refined wheat flour. The biscuits made from millet were prepared using 45% of millet flour and 55% of refined wheat flour. All the three types of biscuits were found to be acceptable by a trained panel and diabetic subjects. The shelf life study indicated that the biscuits made from both types of millet flour can be successfully stored for a period of 60 days in a thermally sealed single polyethylene bag at room conditions. The millet flour and biscuits had higher content of crude fibre, total ash and total dietary fibre than refined wheat flour and biscuits. Biscuits from foxtail millet flour had the lowest GI of 50.8 compared to 68 for biscuits from barnyard millet flour and refined wheat flour. Thus, besides its traditional use in making chapatti and porridge, millet can be exploited for the development of low GI therapeutic food products like biscuits. Further studies are needed to determine long term effects of consumption of foxtail millet biscuits on blood lipid profile and glycosylated haemoglobin of diabetics and cardiovascular patients. PMID:22691989

  15. The USDA Pearl Millet Germplasm Collection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The USDA National Plant Germplasm System pearl millet collection is maintained at the Plant Genetic Resources Conservation Unit located in Griffin, Ga. The germplasm collection contains 1297 unique accessions collected from 31 different countries. The majority of the accessions were collected or d...

  16. Exploration of millet models for developing nutrient rich graminaceous crops.

    PubMed

    Muthamilarasan, Mehanathan; Dhaka, Annvi; Yadav, Rattan; Prasad, Manoj

    2016-01-01

    Protein-energy malnutrition and micronutrient deficiencies contribute to high mortality among considerable proportion of the current 7.2 billion global populations, especially children. Although poverty and diets poor in nutrition are prime reasons for prevalence of malnutrition, nutritionally dense crops offer an inexpensive and sustainable solution to the problem of malnutrition. Remarkably, millets are nutritionally superior to major non-millet cereals. They especially are rich in dietary fibers, antioxidants, phytochemicals and polyphenols, which contribute broad-spectrum positive impacts to human health. However, millets have received lesser research attention universally, and considering this, the present review was planned to summarize the reports available on nutrition profile of millets and non-millet cereals to provide a comparative insight on importance of millets. It also emphasizes the need for research on deciphering nutritional traits present in millets and to develop strategies for introgressing these traits into other conventional staple crops using germplasm and 'omics' technologies. In some millet species, excellent 'omics' and germplasm panels have started to get available which can act as a starting point for understanding as well as of introgressing healthful traits across millets and non-millet cereals. PMID:26566827

  17. Influence of moisture content on physical properties of minor millets.

    PubMed

    Balasubramanian, S; Viswanathan, R

    2010-06-01

    Physical properties including 1000 kernel weight, bulk density, true density, porosity, angle of repose, coefficient of static friction, coefficient of internal friction and grain hardness were determined for foxtail millet, little millet, kodo millet, common millet, barnyard millet and finger millet in the moisture content range of 11.1 to 25% db. Thousand kernel weight increased from 2.3 to 6.1 g and angle of repose increased from 25.0 to 38.2°. Bulk density decreased from 868.1 to 477.1 kg/m(3) and true density from 1988.7 to 884.4 kg/m(3) for all minor millets when observed in the moisture range of 11.1 to 25%. Porosity decreased from 63.7 to 32.5%. Coefficient of static friction of minor millets against mild steel surface increased from 0.253 to 0.728 and coefficient of internal friction was in the range of 1.217 and 1.964 in the moisture range studied. Grain hardness decreased from 30.7 to 12.4 for all minor millets when moisture content was increased from 11.1 to 25% db. PMID:23572637

  18. 7 CFR 457.165 - Millet crop insurance provisions.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... levels of coverage, as specified in 7 CFR part 400, subpart T, and pay an additional premium, you may..., but not limited to, moisture content, will not be considered. Millet. Proso millet produced for grain... definition contained in the Basic Provisions, land on which seed is initially spread onto the soil surface...

  19. 7 CFR 457.165 - Millet crop insurance provisions.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... levels of coverage, as specified in 7 CFR part 400, subpart T, and pay an additional premium, you may..., but not limited to, moisture content, will not be considered. Millet. Proso millet produced for grain... definition contained in the Basic Provisions, land on which seed is initially spread onto the soil surface...

  20. 7 CFR 457.165 - Millet crop insurance provisions.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... levels of coverage, as specified in 7 CFR part 400, subpart T, and pay an additional premium, you may..., but not limited to, moisture content, will not be considered. Millet. Proso millet produced for grain... definition contained in the Basic Provisions, land on which seed is initially spread onto the soil surface...

  1. 7 CFR 457.165 - Millet crop insurance provisions.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... levels of coverage, as specified in 7 CFR part 400, subpart T, and pay an additional premium, you may..., but not limited to, moisture content, will not be considered. Millet. Proso millet produced for grain... definition contained in the Basic Provisions, land on which seed is initially spread onto the soil surface...

  2. Evaluation of nutraceutical and antinutritional properties in barnyard and finger millet varieties grown in Himalayan region.

    PubMed

    Panwar, Priyankar; Dubey, Ashutosh; Verma, A K

    2016-06-01

    Five elite varieties of barnyard (Echinochloa frumentacea) and finger (Eleusine coracana) growing at northwestern Himalaya were investigated for nutraceutical and antinutritional properties. Barnyard millet contained higher amount of crude fiber, total dietary fiber, tryptophan content, total carotenoids, α-tocopherol compared to the finger millet whereas the finger millet contains higher amount of methionine and ascorbic acid as compared to the barnyard millet. The secondary metabolites of biological functions were analyzed and found that barnyard millet contained the higher amount of polyphenols, tannins and ortho-dihydroxy phenol content compared to finger millet. Among antinutitional compounds barnyard millet contained lower phytic acid content compare to finger millet whereas no significant difference in trypsin inhibition activity of barnyard millet and finger millet varieties were found. Barnyard millet contained higher acid phosphatase, α-galactosidase and α-amylase inhibitor activity compared to finger millet. Finger millet seeds contained about 10-13 folds higher calcium content and double amount of manganese content in comparison to barnyard millet seeds. Present study suggests that barnyard millet varieties studied under present investigation were found nutritionally superior compared to finger millet varieties. PMID:27478234

  3. Sodium Stimulates Growth of Panicum coloratum through Enhanced Photosynthesis

    PubMed Central

    Matoh, Tōru; Murata, Shinji

    1990-01-01

    A sodium-requiring C4 plant, Panicum coloratum Walt. cv Kabulabula, was grown with and without sodium. Rate of nitrogen uptake and photosynthesis were measured during the recovery from sodium deficiency. The beneficial effect of sodium on growth was apparent irrespective of nitrogen source, ammonium- or nitrate-nitrogen. The leaf photosynthetic rate (14CO2 fixation) doubled by sodium within 1 hour of the application. PMID:16667386

  4. Total iron absorption by young women from iron-biofortified pearl millet composite meals is double that from regular millet meals but less than that from post-harvest iron-fortified millet meals.

    PubMed

    Cercamondi, Colin I; Egli, Ines M; Mitchikpe, Evariste; Tossou, Felicien; Zeder, Christophe; Hounhouigan, Joseph D; Hurrell, Richard F

    2013-09-01

    Iron biofortification of pearl millet (Pennisetum glaucum) is a promising approach to combat iron deficiency (ID) in the millet-consuming communities of developing countries. To evaluate the potential of iron-biofortified millet to provide additional bioavailable iron compared with regular millet and post-harvest iron-fortified millet, an iron absorption study was conducted in 20 Beninese women with marginal iron status. Composite test meals consisting of millet paste based on regular-iron, iron-biofortified, or post-harvest iron-fortified pearl millet flour accompanied by a leafy vegetable sauce or an okra sauce were fed as multiple meals for 5 d. Iron absorption was measured as erythrocyte incorporation of stable iron isotopes. Fractional iron absorption from test meals based on regular-iron millet (7.5%) did not differ from iron-biofortified millet meals (7.5%; P = 1.0), resulting in a higher quantity of total iron absorbed from the meals based on iron-biofortified millet (1125 vs. 527 μg; P < 0.0001). Fractional iron absorption from post-harvest iron-fortified millet meals (10.4%) was higher than from regular-iron and iron-biofortified millet meals (P < 0.05 and P < 0.01, respectively), resulting in a higher quantity of total iron absorbed from the post-harvest iron-fortified millet meals (1500 μg; P < 0.0001 and P < 0.05, respectively). Results indicate that consumption of iron-biofortified millet would double the amount of iron absorbed and, although fractional absorption of iron from biofortification is less than that from fortification, iron-biofortified millet should be highly effective in combatting ID in millet-consuming populations.

  5. Total Iron Absorption by Young Women from Iron-Biofortified Pearl Millet Composite Meals Is Double That from Regular Millet Meals but Less Than That from Post-Harvest Iron-Fortified Millet Meals123

    PubMed Central

    Cercamondi, Colin I.; Egli, Ines M.; Mitchikpe, Evariste; Tossou, Felicien; Zeder, Christophe; Hounhouigan, Joseph D.; Hurrell, Richard F.

    2013-01-01

    Iron biofortification of pearl millet (Pennisetum glaucum) is a promising approach to combat iron deficiency (ID) in the millet-consuming communities of developing countries. To evaluate the potential of iron-biofortified millet to provide additional bioavailable iron compared with regular millet and post-harvest iron-fortified millet, an iron absorption study was conducted in 20 Beninese women with marginal iron status. Composite test meals consisting of millet paste based on regular-iron, iron-biofortified, or post-harvest iron-fortified pearl millet flour accompanied by a leafy vegetable sauce or an okra sauce were fed as multiple meals for 5 d. Iron absorption was measured as erythrocyte incorporation of stable iron isotopes. Fractional iron absorption from test meals based on regular-iron millet (7.5%) did not differ from iron-biofortified millet meals (7.5%; P = 1.0), resulting in a higher quantity of total iron absorbed from the meals based on iron-biofortified millet (1125 vs. 527 μg; P < 0.0001). Fractional iron absorption from post-harvest iron-fortified millet meals (10.4%) was higher than from regular-iron and iron-biofortified millet meals (P < 0.05 and P < 0.01, respectively), resulting in a higher quantity of total iron absorbed from the post-harvest iron-fortified millet meals (1500 μg; P < 0.0001 and P < 0.05, respectively). Results indicate that consumption of iron-biofortified millet would double the amount of iron absorbed and, although fractional absorption of iron from biofortification is less than that from fortification, iron-biofortified millet should be highly effective in combatting ID in millet-consuming populations. PMID:23884388

  6. Pearl millet in diets of white Pekin ducks.

    PubMed

    Adeola, O; Rogler, J C; Sullivan, T W

    1994-03-01

    In two 21-d experiments, the performance, nutrient utilization, and carcass composition of ducks fed diets containing pearl millet were compared with those fed diets containing corn. Corn, in diets at two protein levels (22 vs 18% in Experiment 1 and 22 vs 16% in Experiment 2), was replaced by pearl millet either on an equal-weight or isonitrogenous basis. During the first 2 wk of the first experiment, corn diets compared on an isonitrogenous basis were superior (P < .05) to the millet diets in promoting weight gain (666 vs 633 g per duck) and feed consumption (965 vs 914 g per duck); but when compared on an equal-weight basis, the millet diets were similar to the corn diets in promoting growth. No significant differences were observed for weight gain, feed consumption, or feed efficiency at the end of 3 wk. Over the 21-d study, the higher protein diets were more efficiently (P < .05) converted to weight gain than the lower protein diets (.63 vs .60 g gain:g feed). Carcass protein in ducks fed the corn diets was greater (P < .05) than in those fed the pearl millet diets. In Experiment 2, growth performance differences across dietary protein levels were similar to those in Experiment 1. However in contrast to Experiment 1, feed consumption was similar for corn and pearl millet diets (776 vs 786 g per duck, respectively), and ducks fed the corn diets gained less (P < .05) than those fed the pearl millet diets (590 vs 622 g per duck) during the first 2 wk of Experiment 2. Results of the nutrient utilization trial conducted at the end of Experiment 2 revealed that diets containing pearl millet were higher (P < .05) in AME than those containing corn (3,300 vs 3,100 kcal/kg). These results indicate that pearl millet has a higher energy value and appears to be at least equal to corn in promoting weight gains in ducks.

  7. Haloxyfop mode of action in liquid cultures of proso millet: An analysis of haloxyfop sensitivity changes during growth

    SciTech Connect

    Irzyk, G.P.

    1989-01-01

    Haloxyfop is a grass-selective herbicide that inhibits acetyl-CoA carboxylase in species that are not tolerant to the herbicide. Liquid cultures of proso millet (Panicum miliaceum) cells treated with haloxyfop at different phases of growth exhibited different levels of sensitivity to the herbicide. Treatment of 1-d cultures with 1 {mu}M haloxyfop completely inhibited growth within 48 h. In contrast, 1 mM haloxyfop was required to elicit a similar response in 4-, 7-, or 10-d cultures. Calculated IC{sub 50} values indicated a 300-fold decrease in haloxyfop sensitivity during the period from 1 to 4 d. This period of growth coincided with the greatest increase in cell number during culture growth and suggested that dividing cells are most sensitive to haloxyfop. Uptake and metabolism of {sup 14}C-haloxyfop in 1-d and 4-d cultures were compared. In both cultures, amounts of radiolabel uptake were similar. Almost all radioactivity extracted from 1- and 4-d cells was present as the parent compound. These results suggested that the sensitivity change was related to other factors. Acetyl-CoA carboxylase activity of proso millet cells, measured in vitro by the acetyl-CoA-dependent incorporation of {sup 14} C-bicarbonate into an acid-stable product, was essentially constant during culture growth. Micromolar concentrations of haloxyfop significantly inhibited acetyl-CoA carboxylase activity from both sensitive and insensitive cultures. Thus, the change in the sensitivity of cultures to haloxyfop was not correlated with changes in acetyl-CoA carboxylase abundance, activity, or sensitivity to haloxyfop during culture growth. In vivo incorporation of {sup 14}C-acetate into lipids was decreased by 1 {mu}M haloxyfop in both 1-d and 4-d cultures at the earliest sampling times but the amount of inhibition was significantly greater in the sensitive cultures.

  8. Effect of foxtail millet protein hydrolysates on lowering blood pressure in spontaneously hypertensive rats

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to determine the effect of foxtail millet protein hydrolysates on lowering blood pressure in spontaneously hypertensive rats (SHRs). The protein of foxtail millet after extruding or fermenting and the raw foxtail millet was extracted and hydrolyzed by digestive protea...

  9. Population genetics and structure of a global foxtail millet germplasm collection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Foxtail millet is one among the most ancient crops of dryland agriculture. It is the second most important crop among millets, grown for grains or forage. Foxtail millet germplasm resources provide reservoirs of novel alleles and genes for crop improvement that have remained mostly unexplored. We ge...

  10. Apomictic and sexual pearl millet X Pennisetum squamulatum hybrids

    SciTech Connect

    Dujardin, M.; Hanna, W.W.

    1983-01-01

    Pennisetum squamulatum Fresen, an apomictic East African grass (2n = 54) was crossed to tetraploid (2n = 28) sexual pearl millet, P. americanum L. Leeke to study the potential for germplasm exchange. Twenty interspecific hybrids (2n = 41) with 14 pearl millet and 27 P. squamulatum chromosomes were obtained. All resembled P. squamulatum in perennial growth habit and inflorescence characteristics and resembled pearl millet in leafiness and pencillate anther tips. Seventeen of these hybrids were more vigorous than either parent. The most common chromosome association at metaphase I was 18 bivalents plus 5 univalents. At anaphase I and telophase I laggards, fragments, and unequal chromosome distribution were observed. Fifteen of 17 interspecific hybrids reproduced by facultative apomixis, one was sexual and one was an obligate apomict. Ovules with aposporous embryo sacs ranged from 1 to 93% in facultative apomictic plants. Morphological characteristics and chromosome numbers of open-pollinated progeny from the apomictic interspecific hybrid were identical to those of the seed parent indicating obligate apomictic reproduction. Both sexual and apomictic hybrids were partially male fertile with pollen stainability ranging from 29 percent to 79 percent and seed-set ranging from 1 to 60 seed per inflorescence under open-pollination. Development of fertile apomictic pearl millet-P. squamulatum interspecific hybrids appears to be a very useful tool for the transfer of genes for apomixis from the wild species to pearl millet.

  11. In vitro starch digestibility and in vivo glycemic response of foxtail millet and its products.

    PubMed

    Ren, Xin; Chen, Jing; Molla, Mohammad Mainuddin; Wang, Chao; Diao, Xianmin; Shen, Qun

    2016-01-01

    Foxtail millet, as a leading variety in arid and semi-arid areas of Asia and Africa, can provide broad potential benefits to human health. However, its digestion properties have not been reported. So in this study, the in vitro starch digestibilities and in vivo glycemic indices (GI) of foxtail millet and pure millet products were investigated. The results showed that starch digestibility of the foxtail millet flour is obviously lower than that of wheat flour. However, deproteinization and heating significantly increased its rapidly digestible starch and decreased its slowly digestible starch and resistant starch. The GIs of pure millet products were in the following order: millet porridge (93.6 ± 11.3) > millet steamed bread (89.6 ± 8.8) > No. 1 millet pancake (75.0% millet flour and 25.0% extrusion flour, 83.0 ± 9.6) > No. 2 millet pancake (without extrusion flour, 76.2 ± 10.7) > cooked millet (64.4 ± 8.5). They were significantly positively correlated with the rapidly digestible starch (r = 0.959), degree of gelatinization (r = 0.967) and estimated glycemic index (r = 0.988). Both in vitro and in vivo tests suggested that boiling, steaming and extrusion enhanced the formation of digestible starch and subsequently increased the GI values. Additionally, the No. 1 millet pancake and cooked millet had a relatively gentle stimulation on β-cell. Therefore, foxtail millet, especially the cooked millet, may serve as a potential source of nutraceutical and functional food that could delay the development of type 2 diabetes.

  12. Dominant gene for rust resistance in pearl millet

    SciTech Connect

    Hanna, W.W.; Wells, H.D.; Burton, G.W.

    1985-01-01

    Rust (Puccinia substriata var. indica) resistance was discovered in three Pennisetum americanum (L.) Leeke subspecies monodii (Maire) Brunken accessions from Senegal. Resistant plant were free of rust, although the bottom one or two leaves of some plants did develop a brown discoloration without pustules. Resistance was controlled by a dominant gene assigned the gene symbol Rr1. Backcrossing has been effective in transferring resistance from the wild grassy, monodii to cultivated pearl millet. The Rr1 gene should be useful in the production of rust resistant pearl millet hybrids and cultivars. 6 references, 1 table.

  13. Effect of sesame seed flour on millet biscuit characteristics.

    PubMed

    Alobo, A P

    2001-01-01

    Defatted sesame seed flour replaced millet flour at 30, 40, and 50% and was used to prepare biscuits. Protein content of the biscuits was significantly (p < or = 0.05) increased by replacement with sesame seed flour. Millet flour biscuits were heavier than those from the blends. Diameters and weights of biscuits were reduced and thicknesses and spread factors were increased with increasing level of sesame replacement. Sensory evaluation results showed that the biscuits were highly rated for flavor and crispiness but considered poor in color.

  14. The genetic makeup of a global barnyard millet germplasm collection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Barnyard millet (Echinochloa spp.) is an important crop for many smallholder farmers in southern and eastern Asia. It is valued for its drought tolerance, rapid maturation, and superior nutritional qualities. Despite these characteristics there are almost no genetic or genomic resources for this cro...

  15. Progress in grain pearl millet research and market developments

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pearl millet (Pennisetum glaucum [L.] R. Br.) has historically been grown only for forage and hay in the southern United States. However, recent research and technology transfer activities are resulting in continued improvements in grain hybrids adapted to the southeast and the emergence of new mark...

  16. Producing and Marketing Proso Millet in the Great Plains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Proso millet is a short-season summer crop that produces well in the semi-arid western Great Plains and is suitable for diversifying and intensifying dryland production systems. Proso allows transition back to winter wheat in cropping rotations. No-till methods work well with proso establishment. Pr...

  17. Progress in Grain Pearl Millet Research and Market Development

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pearl millet has been historically grown for forage production and cattle grazing in the United States. It is widely grown as a multi-purpose cereal grain crop principally for food, and also for feed, fodder, fuel and mulch on more than 26 million hectares, primarily in arid and semi-arid regions of...

  18. Response of `Alamo` switchgrass (Panicum virgatum) to weed management practices

    SciTech Connect

    Sledge, S.L.; Walker, R.H.

    1995-11-01

    Field studies were conducted in 1992 and 1994 to evaluate herbicides that would provide weed control and biomass yield of `Alamo` switchgrass during the year of establishment. For grass weed control, bensulide was applied preplant incorporated (PPI) at 4.4 kg ai ha{sup -1}, while MSMA was applied postemergence over the top (POST) at 2.2 kg ai ha{sup -1} to switchgrass that had two to four leaves. Herbicides applied POST for control of broadleaf weed species included 2,4-D at 0.6 kg ai ha{sup -1} or metsulfuron at 0.02 kg ai ha{sup -1}. Herbicide treatments included bensulide and MSMA applied alone or in combination with s,3-D or metsulfuron. They were arranged in a randomized complete block design and replicated four times. Weed control, crop tolerance and yield data were taken over time. Bensulide or MSMA applied alone provided 80% or greater control of large crabgrass, broadleaf signalgrass and fall panicum for the two years. The addition of metsulfuron or 2,4-D provided acceptable control of smooth pigweed, prickly sida, pitted morningglory and sicklepod. MSMA treatments produced slight PANVI injury that ranged from 20 to 36%. Bensulide injury was mostly moderate ranging from 19 to 88%. Although less injury was recorded with MSMA treatments, bensulide treatments trended higher for establishment-year biomass production that averaged 5123 kg ha{sup -1} as compared to 4239 kg ha{sup -1} for MSMA treatments.

  19. From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700–500 BC)

    PubMed Central

    Deng, Zhenhua; Qin, Ling; Gao, Yu; Weisskopf, Alison Ruth; Zhang, Chi; Fuller, Dorian Q.

    2015-01-01

    Baligang is a Neolithic site on a northern tributary of the middle Yangtze and provides a long archaeobotanical sequence from the Seventh Millennium BC upto the First Millennium BC. It provides evidence for developments in rice and millet agriculture influenced by shifting cultural affiliation with the north (Yangshao and Longshan) and south (Qujialing and Shijiahe) between 4300 and 1800 BC. This paper reports on plant macro-remains (seeds), from systematic flotation of 123 samples (1700 litres), producing more than 10,000 identifiable remains. The earliest Pre-Yangshao occupation of the sites provide evidence for cultivation of rice (Oryza sativa) between 6300–6700 BC. This rice appears already domesticated in on the basis of a dominance of non-shattering spikelet bases. However, in terms of grain size changes has not yet finished, as grains are still thinner than more recent domesaticated rice and are closer in grain shape to wild rices. This early rice was cultivated alongside collection of wild staple foods, especially acorns (Quercus/Lithicarpus sensu lato). In later periods the sites has evidence for mixed farming of both rice and millets (Setaria italica and Panicum miliaceum). Soybean appears on the site in the Shijiahe period (ca.2500 BC) and wheat (Triticum cf. aestivum) in the Late Longshan levels (2200–1800 BC). Weed flora suggests an intensification of rice agriculture over time with increasing evidence of wetland weeds. We interpret these data as indicating early opportunistic cultivation of alluvial floodplains and some rainfed rice, developing into more systematic and probably irrigated cultivation starting in the Yangshao period, which intensified in the Qujialing and Shijiahe period, before a shift back to an emphasis on millets with the Late Longshan cultural influence from the north. PMID:26460975

  20. From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700-500 BC).

    PubMed

    Deng, Zhenhua; Qin, Ling; Gao, Yu; Weisskopf, Alison Ruth; Zhang, Chi; Fuller, Dorian Q

    2015-01-01

    Baligang is a Neolithic site on a northern tributary of the middle Yangtze and provides a long archaeobotanical sequence from the Seventh Millennium BC upto the First Millennium BC. It provides evidence for developments in rice and millet agriculture influenced by shifting cultural affiliation with the north (Yangshao and Longshan) and south (Qujialing and Shijiahe) between 4300 and 1800 BC. This paper reports on plant macro-remains (seeds), from systematic flotation of 123 samples (1700 litres), producing more than 10,000 identifiable remains. The earliest Pre-Yangshao occupation of the sites provide evidence for cultivation of rice (Oryza sativa) between 6300-6700 BC. This rice appears already domesticated in on the basis of a dominance of non-shattering spikelet bases. However, in terms of grain size changes has not yet finished, as grains are still thinner than more recent domesaticated rice and are closer in grain shape to wild rices. This early rice was cultivated alongside collection of wild staple foods, especially acorns (Quercus/Lithicarpus sensu lato). In later periods the sites has evidence for mixed farming of both rice and millets (Setaria italica and Panicum miliaceum). Soybean appears on the site in the Shijiahe period (ca.2500 BC) and wheat (Triticum cf. aestivum) in the Late Longshan levels (2200-1800 BC). Weed flora suggests an intensification of rice agriculture over time with increasing evidence of wetland weeds. We interpret these data as indicating early opportunistic cultivation of alluvial floodplains and some rainfed rice, developing into more systematic and probably irrigated cultivation starting in the Yangshao period, which intensified in the Qujialing and Shijiahe period, before a shift back to an emphasis on millets with the Late Longshan cultural influence from the north.

  1. From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700-500 BC).

    PubMed

    Deng, Zhenhua; Qin, Ling; Gao, Yu; Weisskopf, Alison Ruth; Zhang, Chi; Fuller, Dorian Q

    2015-01-01

    Baligang is a Neolithic site on a northern tributary of the middle Yangtze and provides a long archaeobotanical sequence from the Seventh Millennium BC upto the First Millennium BC. It provides evidence for developments in rice and millet agriculture influenced by shifting cultural affiliation with the north (Yangshao and Longshan) and south (Qujialing and Shijiahe) between 4300 and 1800 BC. This paper reports on plant macro-remains (seeds), from systematic flotation of 123 samples (1700 litres), producing more than 10,000 identifiable remains. The earliest Pre-Yangshao occupation of the sites provide evidence for cultivation of rice (Oryza sativa) between 6300-6700 BC. This rice appears already domesticated in on the basis of a dominance of non-shattering spikelet bases. However, in terms of grain size changes has not yet finished, as grains are still thinner than more recent domesaticated rice and are closer in grain shape to wild rices. This early rice was cultivated alongside collection of wild staple foods, especially acorns (Quercus/Lithicarpus sensu lato). In later periods the sites has evidence for mixed farming of both rice and millets (Setaria italica and Panicum miliaceum). Soybean appears on the site in the Shijiahe period (ca.2500 BC) and wheat (Triticum cf. aestivum) in the Late Longshan levels (2200-1800 BC). Weed flora suggests an intensification of rice agriculture over time with increasing evidence of wetland weeds. We interpret these data as indicating early opportunistic cultivation of alluvial floodplains and some rainfed rice, developing into more systematic and probably irrigated cultivation starting in the Yangshao period, which intensified in the Qujialing and Shijiahe period, before a shift back to an emphasis on millets with the Late Longshan cultural influence from the north. PMID:26460975

  2. Evaluation of dough rheological properties and bread texture of pearl millet-wheat flour mix.

    PubMed

    Maktouf, Sameh; Jeddou, Khawla Ben; Moulis, Claire; Hajji, Hejer; Remaud-Simeon, Magali; Ellouz-Ghorbel, Raoudha

    2016-04-01

    This study was undertaken with the objective of formulating composite bread using pearl millet (Pennisetum glaucum) and wheat (Triticum aestivum) flours . Rheological and bread making properties of composite flours were evaluated. Mixolab results revealed torque increased and dough stability time decreased upon incorporation of pearl millet flour in wheat flour. The incorporation of millet flour at optimum level (5 %) led to an increase of the dough strength (W) and the elasticity-to-extensibility ratio (P/L) by 31 % and 65 % respectively. The bread texture and volume were also improved. These findings indicated the potentiality of using millet flour in bread making. PMID:27413235

  3. The tolerance efficiency of Panicum maximum and Helianthus annuus in TNT-contaminated soil and nZVI-contaminated soil.

    PubMed

    Jiamjitrpanich, Waraporn; Parkpian, Preeda; Polprasert, Chongrak; Laurent, François; Kosanlavit, Rachain

    2012-01-01

    This study was designed to compare the initial method for phytoremediation involving germination and transplantation. The study was also to determine the tolerance efficiency of Panicum maximum (Purple guinea grass) and Helianthus annuus (Sunflower) in TNT-contaminated soil and nZVI-contaminated soil. It was found that the transplantation of Panicum maximum and Helianthus annuus was more suitable than germination as the initiate method of nano-phytoremediation potting test. The study also showed that Panicum maximum was more tolerance than Helianthus annuus in TNT and nZVI-contaminated soil. Therefore, Panicum maximum in the transplantation method should be selected as a hyperaccumulated plant for nano-phytoremediation potting tests. Maximum tolerance dosage of Panicum maximum to TNT-concentration soil was 320 mg/kg and nZVI-contaminated soil was 1000 mg/kg in the transplantation method.

  4. Phenolic and carotenoid profiles and antiproliferative activity of foxtail millet.

    PubMed

    Zhang, Li Zhen; Liu, Rui Hai

    2015-05-01

    Commonly consumed foxtail millet varieties Jingu28 and Jingu34 were compared in terms of phytochemical composition, antioxidant property, and antiproliferative activity. The cellular antioxidant activity (CAA) was evaluated based on HepG2 cell cultivation. Antiproliferative properties against HepG2 and MDA cell were assayed by methylene blue assay. Total phenolic content (TPC) was 78.79 and 114.22 mg gallic acid equiv/100 g DW in Jingu28 and Jingu34. Both varieties contained ferulic acid, chlorogenic acid, caffeic acid and p-coumaric acid, syringic acid. Xanthophylls and zeaxanthin were also detected. Peroxyl radical scavenging capacity of the foxtail millet were 228.13 (Jingu28) and 355.03 (Jingu34) μmol of vitamin C equiv/100 g, respectively. CAA values of the foxtail millet varieties ranged from 1.52 to 8.97 μmol quercetin equiv/100 g DW. The proliferation of MDA and HepG2 cancer cells were significantly inhibited in a dose-dependent manner after exposure to Jingu28 and Jingu34 extractions. PMID:25529711

  5. Leaf Dynamics of Panicum maximum under Future Climatic Changes.

    PubMed

    Britto de Assis Prado, Carlos Henrique; Haik Guedes de Camargo-Bortolin, Lívia; Castro, Érique; Martinez, Carlos Alberto

    2016-01-01

    Panicum maximum Jacq. 'Mombaça' (C4) was grown in field conditions with sufficient water and nutrients to examine the effects of warming and elevated CO2 concentrations during the winter. Plants were exposed to either the ambient temperature and regular atmospheric CO2 (Control); elevated CO2 (600 ppm, eC); canopy warming (+2°C above regular canopy temperature, eT); or elevated CO2 and canopy warming (eC+eT). The temperatures and CO2 in the field were controlled by temperature free-air controlled enhancement (T-FACE) and mini free-air CO2 enrichment (miniFACE) facilities. The most green, expanding, and expanded leaves and the highest leaf appearance rate (LAR, leaves day(-1)) and leaf elongation rate (LER, cm day(-1)) were observed under eT. Leaf area and leaf biomass were higher in the eT and eC+eT treatments. The higher LER and LAR without significant differences in the number of senescent leaves could explain why tillers had higher foliage area and leaf biomass in the eT treatment. The eC treatment had the lowest LER and the fewest expanded and green leaves, similar to Control. The inhibitory effect of eC on foliage development in winter was indicated by the fewer green, expanded, and expanding leaves under eC+eT than eT. The stimulatory and inhibitory effects of the eT and eC treatments, respectively, on foliage raised and lowered, respectively, the foliar nitrogen concentration. The inhibition of foliage by eC was confirmed by the eC treatment having the lowest leaf/stem biomass ratio and by the change in leaf biomass-area relationships from linear or exponential growth to rectangular hyperbolic growth under eC. Besides, eC+eT had a synergist effect, speeding up leaf maturation. Therefore, with sufficient water and nutrients in winter, the inhibitory effect of elevated CO2 on foliage could be partially offset by elevated temperatures and relatively high P. maximum foliage production could be achieved under future climatic change. PMID:26894932

  6. Leaf Dynamics of Panicum maximum under Future Climatic Changes

    PubMed Central

    Britto de Assis Prado, Carlos Henrique; Haik Guedes de Camargo-Bortolin, Lívia; Castro, Érique; Martinez, Carlos Alberto

    2016-01-01

    Panicum maximum Jacq. ‘Mombaça’ (C4) was grown in field conditions with sufficient water and nutrients to examine the effects of warming and elevated CO2 concentrations during the winter. Plants were exposed to either the ambient temperature and regular atmospheric CO2 (Control); elevated CO2 (600 ppm, eC); canopy warming (+2°C above regular canopy temperature, eT); or elevated CO2 and canopy warming (eC+eT). The temperatures and CO2 in the field were controlled by temperature free-air controlled enhancement (T-FACE) and mini free-air CO2 enrichment (miniFACE) facilities. The most green, expanding, and expanded leaves and the highest leaf appearance rate (LAR, leaves day-1) and leaf elongation rate (LER, cm day-1) were observed under eT. Leaf area and leaf biomass were higher in the eT and eC+eT treatments. The higher LER and LAR without significant differences in the number of senescent leaves could explain why tillers had higher foliage area and leaf biomass in the eT treatment. The eC treatment had the lowest LER and the fewest expanded and green leaves, similar to Control. The inhibitory effect of eC on foliage development in winter was indicated by the fewer green, expanded, and expanding leaves under eC+eT than eT. The stimulatory and inhibitory effects of the eT and eC treatments, respectively, on foliage raised and lowered, respectively, the foliar nitrogen concentration. The inhibition of foliage by eC was confirmed by the eC treatment having the lowest leaf/stem biomass ratio and by the change in leaf biomass-area relationships from linear or exponential growth to rectangular hyperbolic growth under eC. Besides, eC+eT had a synergist effect, speeding up leaf maturation. Therefore, with sufficient water and nutrients in winter, the inhibitory effect of elevated CO2 on foliage could be partially offset by elevated temperatures and relatively high P. maximum foliage production could be achieved under future climatic change. PMID:26894932

  7. Effect of drought stress on gas exchange in channel millet (Echinochloa turneriana) and pearl millet (Pennisetum americanum)

    SciTech Connect

    Conover, D.G.; Sovonick-Dunford, S. )

    1990-05-01

    Gas exchange measurements were made on well-watered and droughted plants of the drought resistant pearl millet and of channel millet, a potential new crop for semi-arid regions. Photosynthesis and water use efficiency were similar for controls of both species at atmospheric CO{sub 2} levels and were reduced similarly by drought in both species. The CO{sub 2} saturated rate and the carboxylation efficiency were lowered by drought in both species, while stomatal limitation was increased by drought. Autoradiograms indicated that photosynthesis occurs evenly over the surface of well-watered control leaves of both species, but not in leaves of droughted plants. This could result in an overestimate of the effect of nonstomatal inhibition of photosynthesis by drought.

  8. [Effects of climate warming and drying on millet yield in Gansu Province and related countermeasures].

    PubMed

    Cao, Ling; Wang, Qiang; Deng, Zhen-yong; Guo, Xiao-qin; Ma, Xing-xiang; Ning, Hui-fang

    2010-11-01

    Based on the data of air temperature, precipitation, and millet yield from Ganzhou, Anding, and Xifeng, the representative stations in Hexi moderate arid oasis irrigation area, moderate sub-arid dry area in middle Gansu, and moderate sub-humid dry area in eastern Gansu, respectively, this paper calculated the regional active accumulated temperature of > or = 0 degrees C, > or =5 degrees C, > or =10 degrees C, > or =15 degrees C, and > or =20 degrees C in millet growth period, and the average temperature and precipitation in millet key growth stages. The millet climatic yield was isolated by orthogonal polynomial, and the change characteristics of climate and millet climatic yield as well as the effects of climate change on millet yield were analyzed by statistical methods of linear tendency, cumulative anomaly, and Mann-Kendall. The results showed that warming and drying were the main regional features in the modern climatic change of Gansu. The regional temperature had a significant upward trend since the early 1990s, while the precipitation was significantly reduced from the late 1980s. There were significant correlations between millet yield and climatic factors. The millet yield in dry areas increased with the increasing temperature and precipitation in millet key growth stages, and that in Hexi Corridor area increased with increasing temperature. Warming and drying affected millet yield prominently. The weather fluctuation index of regional millet yield in Xifeng, Anding, and Ganzhou accounted for 73%, 72%, and 54% of real output coefficient variation, respectively, and the percentages increased significantly after warming. Warming was conducive to the increase of millet production, and the annual increment of millet climatic yield in Xifeng, Anding, and Ganzhou after warming was 30.6, 43.1, and 121.1 kg x hm(-2), respectively. Aiming at the warming and drying trend in Gansu Province in the future, the millet planting area in the Province should be further

  9. Higher iron pearl millet (Pennisetum glaucum L.) provides more absorbable iron that is limited by increased polyphenolic content

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background: Our objective was to compare the capacity of iron (Fe) biofortified and standard pearl millet (Pennisetum glaucum L.) to deliver Fe for hemoglobin (Hb) synthesis. Pearl millet is the most widely grown type of millet. It is common primarily in West Africa and the Indian subcontinent, and ...

  10. Isolation, Characterization, and Quantification of Steroidal Saponins in Switchgrass (Panicum virgatum L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) has been identified for development into an efficient and environment friendly biomass energy crop. A recent five-year study demonstrated that switchgrass grown for biofuel production produced 540 percent more energy than what is needed to grow, harvest and process...

  11. Genome-size variation in switchgrass (Panicum virgatum): flow cytometry and cytology reveal rampant aneuploidy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.), a native perennial dominant of the prairies of North America, has been targeted as a model herbaceous species for biofeedstock development. A flow-cytometric survey of a core set of 11 primarily upland polyploid switchgrass accessions indicated that there was con...

  12. Colic Caused by Panicum maximum Toxicosis in Equidae in Northern Brazil

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In the Amazon region of northern Brazil, Panicum maximum cultivars Mombaça, Tanzânia, and Massai cause severe colic and death in horses and mules. The disease occurs in the rainy season, when sprouting pastures are grazed by equidae. In the 8 separate disease outbreaks studied, a total of 52 out of ...

  13. Nitrogen and harvest impact on biomass yield of established switchgrass (Panicum virgatum L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) has been identified as the model herbaceous biomass energy crop by the United States Department of Energy as it is capable of being a viable bioenergy feedstock while providing multiple environmental benefits when grown on marginal soil landscapes. Nitrogen (N) fert...

  14. Soil type and species diversity influence selection on physiology in Panicum virgatum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Species diversity influences the productivity and stability of plant communities, but its effect on the evolution of species within those communities is poorly understood. In this study, we tested whether species diversity and soil type influence selection on physiology in switchgrass (Panicum virga...

  15. Finger millet (Ragi, Eleusine coracana L.): a review of its nutritional properties, processing, and plausible health benefits.

    PubMed

    Shobana, S; Krishnaswamy, K; Sudha, V; Malleshi, N G; Anjana, R M; Palaniappan, L; Mohan, V

    2013-01-01

    Finger millet or ragi is one of the ancient millets in India (2300 BC), and this review focuses on its antiquity, consumption, nutrient composition, processing, and health benefits. Of all the cereals and millets, finger millet has the highest amount of calcium (344mg%) and potassium (408mg%). It has higher dietary fiber, minerals, and sulfur containing amino acids compared to white rice, the current major staple in India. Despite finger millet's rich nutrient profile, recent studies indicate lower consumption of millets in general by urban Indians. Finger millet is processed by milling, malting, fermentation, popping, and decortication. Noodles, vermicilli, pasta, Indian sweet (halwa) mixes, papads, soups, and bakery products from finger millet are also emerging. In vitro and in vivo (animal) studies indicated the blood glucose lowering, cholesterol lowering, antiulcerative, wound healing properties, etc., of finger millet. However, appropriate intervention or randomized clinical trials are lacking on these health effects. Glycemic index (GI) studies on finger millet preparations indicate low to high values, but most of the studies were conducted with outdated methodology. Hence, appropriate GI testing of finger millet preparations and short- and long-term human intervention trials may be helpful to establish evidence-based health benefits.

  16. Photosynthesis of Grass Species Differing in Carbon Dioxide Fixation Pathways : VIII. Ultrastructural Characteristics of Panicum Species in the Laxa Group.

    PubMed

    Brown, R H; Bouton, J H; Rigsby, L; Rigler, M

    1983-02-01

    Ultrastructural studies of leaves of seven Panicum species in or closely related to the Laxa group and classified as C(3), C(4) or C(3)-C(4) intermediate were undertaken to examine features associated with C(3) and C(4) photosynthesis. The C(3) species Panicum rivulare Trin. had few organelles in bundle sheath cell profiles (2 chloroplasts, 1.1 mitochondria, and 0.3 peroxisomes per cell section) compared to an average of 10.6 chloroplasts, 17.7 mitochondria, and 3.2 peroxisomes per bundle sheath cell profile for three C(3)-C(4) species, Panicum milioides Nees ex Trin., Panicum decipiens Nees ex Trin. and Panicum schenckii Hack. However, two other C(3) species, Panicum laxum Sw. and Panicum hylaeicum Mez, contained about 0.7, 0.5, and 0.3 as many chloroplasts, mitochondria, and peroxisomes, respectively, as in bundle sheath cell profiles of the C(3)-C(4) species. Chloroplasts and mitochondria in bundle sheath cells were larger than those in mesophyll cells for the C(4) species Panicum prionitis Griseb. and the C(3)-C(4) species, but in C(3) species the organelles were similar in size or were smaller in the bundle sheath cells. The C(3)-C(4) species and P. laxum and P. hylaeicum exhibited an unusually close association of organelles in bundle sheath cells with mitochondria frequently surrounded in profile by chloroplasts. The high concentrations in bundle sheath cells of somewhat larger organelles than in mesophyll cells correlates with the reduced photorespiration of the C(3)-C(4) species.

  17. Evaluation of health potential of nutritionally enriched Kodo millet (Eleusine coracana) grown in Himachal Pradesh, India.

    PubMed

    Sharma, Shakshi; Sharma, Nivedita; Handa, Shweta; Pathania, Shruti

    2017-01-01

    In this study, Kodo millet grains were phytochemically investigated for their nutritional and antioxidant potential for their use as functional foods. Methanolic extracts of grains showed higher phenolic content and antioxidant activity. TLC studies of the extracted polyphenols from kodo millet showed the predominant presence of ferulic acid and cinnamic acid in the millet. Further quantification of these polyphenols was done by using HPLC, analysing ferulic acid and cinnamic acid. Antagonistic spectrum of the polyphenols extracted showed inhibition against four bacterial test indicators viz. Staphylococcus aureus, Leuconostoc mesenteroides, Bacillus cereus and Enterococcus faecalis proving its antimicrobial action. The grains of kodo millet grains taken under study were found to posses' high protein, carbohydrates, minerals, crude fibers, polyphenols and antioxidants thus can be used as a good source of nutrition with additional health benefits. PMID:27507461

  18. Characterization of modified pearl millet (Pennisetum typhoides) starch.

    PubMed

    Balasubramanian, S; Sharma, R; Kaur, J; Bhardwaj, N

    2014-02-01

    Pearl millet starch (Pennisetum typhoides) was isolated and subjected to hydrothermal, acidic and enzymatic modifications. Native and various modified starches were characterized in terms of yield, moisture, protein, ash, bulk density, swelling power, solubility, colour, sediment volume, gel consistency, water binding capacity, pasting properties, freeze thaw stability and paste clarity. Hydrothermal modification (HTMS) caused an increase in swelling power and solubility. L value was higher for acid and enzymatically modified starches (EMS). A significant reduction (p ≤ 0.05) in sediment volume and water binding capacity was observed for acid modified starch (AMS) and EMS. Peak viscosity values declined for all modifications. However, EMS and AMS showed an improved freeze-thaw stability and paste clarity. PMID:24493886

  19. Antioxidant activity of extracts from foxtail millet (Setaria italica).

    PubMed

    Suma, P Florence; Urooj, Asna

    2012-08-01

    The less explored, commercially available foxtail millet-milled fractions like whole flour & bran rich fraction were studied for its antioxidant potency. Phytochemicals like alkaloids, phenolics, reducing sugars and flavonoids were found only in methanolic & aqueous extracts, while tannins and terpenoids were present in all the solvent extracts of whole flour & bran rich fraction. Antioxidants were extracted using methanol, ethanol and water. Methanolic extracts of whole flour and bran rich fraction exhibited a significantly higher (P < 0.05) radical scavenging activity (44.62% & 51.80% respectively) using DPPH model system, and reducing power (0.381 & 0.455 respectively) at 2 mg, than the other solvents used for extraction. As bran rich fraction showed the highest antioxidant activity, suggesting the presence of antioxidant components in the bran layer. PMID:23904660

  20. Rheological, thermo-mechanical, and baking properties of wheat-millet flour blends.

    PubMed

    Aprodu, Iuliana; Banu, Iuliana

    2015-07-01

    Millet has long been known as a good source of fiber and antioxidants, but only lately started to be exploited by food scientists and food industry as a consequence of increased consumer awareness. In this study, doughs and breads were produced using millet flour in different ratios (10, 20, 30, 40, and 50%) to white, dark, and whole wheat flour. The flour blends were evaluated in terms of rheological and thermo-mechanical properties. Fundamental rheological measurements revealed that the viscosity of the flour formulations increases with wheat flour-extraction rate and decreases with the addition of millet flour. Doughs behavior during mixing, overmixing, pasting, and gelling was established using the Mixolab device. The results of this bread-making process simulation indicate that dough properties become critical for the flour blends with millet levels higher than 30%. The breads were evaluated for volume, texture, and crumb-grain characteristics. The baking test and sensory evaluation results indicated that substitution levels of up to 30% millet flour could be used in composite bread flour. High levels of millet flour (40 and 50%) negatively influenced the loaf volume, crumb texture, and taste.

  1. Assessment of Important Sensory Attributes of Millet Based Snacks and Biscuits.

    PubMed

    McSweeney, Matthew B; Duizer, Lisa M; Seetharaman, Koushik; Dan Ramdath, D

    2016-05-01

    There is an increasing push by consumers for new food products that can provide health benefits. To develop these products, sometimes it is necessary to look to alternative crops, 1 of which is millet. For millet to be successfully adopted by consumers, it is necessary to identify and develop product types that are acceptable to North Americans. Biscuits and extruded snacks were produced using varying amounts of refined proso millet flour (0%, 25%, 75%, and 100%). Sensory analysis was conducted on 8 products (4 types of biscuits and 4 types of extruded snack) in 2 separate tests (1 for biscuits and 1 for snacks). Preferred Attribute Elicitation (PAE), a relatively new sensory method, was used to determine attributes affecting liking of the products. Results indicated that as the amount of millet in the biscuits and extruded snacks increased, the liking of the flavor, texture and overall liking decreased. Millet contributed to a bitter taste and bitter aftertaste, and resulted in gritty and dry food products. Further work is required to refine the products tested as well as to identify further products that can be added to the diet in order to take advantage of the health benefits that millet provides.

  2. Apomictic interspecific hybrids between pearl millet and Pennisetum orientale L. C. Rich

    SciTech Connect

    Hanna, W.W.; Dujardin, M.

    1982-07-01

    Pearl millet, Pennisetum americanum (L.) Leeke, is an important world food and forage crop. Pennisetum orientale L. C. Rich. has genes for apomixis, perennial growth habit, pest resistance, and drought tolerance which could be used to improve pearl millet. The objectives of this research were to determine the cytotaxonomic relationship of these two species and to explore the feasibility of interspecific germplasm transfer. Five interspecific hybrids, 2n = 25, with 7 large P. americanum millet (A) and 18 small P. orientale (O) chromosomes were produced by pollinating cytoplasmic male sterile pearl millet with P. orientale pollen. The O chromosomes paired mainly as bivalents and the A chromosomes remained as univalents. A low frequency of AO chromosome associations were observed. Although the possibility of germplasm exchange existed, the two species appeared to be not closely related. Among three hybrids examined, one was a facultative apomict, one was an obligate apomict and another was highly apomictic with 3% of ovules with sexual embryo sacs. Sixteen backcross progenies were established from interspecific hybrids pollinated with pearl millet pollen. Seven plants were 2n = 23 with 14 A + 9 O chromosomes, five were 2n = 27 with 7 A + 20 O chromosomes and four were 2n = 32 with 14 A and 18 O chromosomes. The balanced chromosome number for both species in these latter plants should provide a mechanism for restoring fertility in the interspecific hybrid thus enabling germplasm transfer. The interspecific hybrids were male sterile but set about 1% seed when pollinated with pearl millet pollen.

  3. Apomictic interspecific hybrids between pearl millet and Pennisetum orientale L. C. Rich

    SciTech Connect

    Hanna, W.W.; Dujardin, M.

    1982-07-01

    Pearl millet, Pennisetum americanum (L.) Leeke, is an important world food and forage crop. Pennisetum orientale L.C. Rich. has genes for apomixis, perennial growth habit, pest resistance, and drought tolerance which could be used to improve pearl millet. The objectives of this research were to determine the cytotaxonomic relationship of these two species and to explore the feasibility of interspecific germplasm transfer. Five interspecific hybrids, 2n = 25, with 7 large P. americanum millet (A) and 18 small P. orientale (0) chromosomes were produced by pollinating cytoplasmic male sterile pearl millet with P. orientale pollen. Although the possibility of germplasm exchange existed, the two species appeared to be not closely related. Among three hybrids examined, one was a facultative apomict, one was an obligate apomict and another was highly apomictic with 3% of ovules with sexual embryo sacs. Sixteen backcross progenies were established from interspecific hybrids pollinated with pearl millet pollen. The balanced chromosome number for both species in these latter plants should provide a mechanism for restoring fertility in the interspecific hybrid thus enabling germplasm transfer. The interspecific hybrids were male sterile but set about 1% seed when pollinated with pearl millet pollen.

  4. Agricultural origins and the isotopic identity of domestication in northern China.

    PubMed

    Barton, Loukas; Newsome, Seth D; Chen, Fa-Hu; Wang, Hui; Guilderson, Thomas P; Bettinger, Robert L

    2009-04-01

    Stable isotope biochemistry (delta(13)C and delta(15)N) and radiocarbon dating of ancient human and animal bone document 2 distinct phases of plant and animal domestication at the Dadiwan site in northwest China. The first was brief and nonintensive: at various times between 7900 and 7200 calendar years before present (calBP) people harvested and stored enough broomcorn millet (Panicum miliaceum) to provision themselves and their hunting dogs (Canis sp.) throughout the year. The second, much more intensive phase was in place by 5900 calBP: during this time both broomcorn and foxtail (Setaria viridis spp. italica) millets were cultivated and made significant contributions to the diets of people, dogs, and pigs (Sus sp.). The systems represented in both phases developed elsewhere: the earlier, low-intensity domestic relationship emerged with hunter-gatherers in the arid north, while the more intensive, later one evolved further east and arrived at Dadiwan with the Yangshao Neolithic. The stable isotope methodology used here is probably the best means of detecting the symbiotic human-plant-animal linkages that develop during the very earliest phases of domestication and is thus applicable to the areas where these connections first emerged and are critical to explaining how and why agriculture began in East Asia.

  5. Photosynthesis of Grass Species Differing in Carbon Dioxide Fixation Pathways: IV. ANALYSIS OF REDUCED OXYGEN RESPONSE IN PANICUM MILIOIDES AND PANICUM SCHENCKII.

    PubMed

    Brown, R H

    1980-02-01

    Reduced photorespiration has been reported in Panicum milioides on the basis of lower CO(2) compensation concentrations than in C(3) species, lower CO(2) evolution in the light, and less response of apparent photosynthesis to O(2) concentration. The lower response to O(2) in P. milioides could be due to reduced O(2) competition with CO(2) for reaction with ribulose 1,5-bisphosphate, to a reduced loss of CO(2), or to an initial fixation of CO(2) by phosphoenolpyruvate carboxylase. Experiments were carried out with Panicum maximum Jacq., a C(4) species having no apparent photorespiration; tall fescue (Festuca arundinacea Schreb.), a C(3) species; P. milioides Nees ex Trin.; and Panicum schenckii Hack. The latter two species are closely related and have low photorespiration rates. CO(2) exchange was measured at five CO(2) concentrations ranging from 0 to 260 microliters per liter at both 2 and 21% O(2). Mesophyll conductance or carboxylation efficiency was estimated by plotting substomatal CO(2) concentrations against apparent photosynthesis. In the C(4) species P. maximum, mesophyll conductance was 0.96 centimeters per second and was unaffected by O(2) concentration. At 21% O(2) mesophyll conductance of tall fescue was decreased 32% below the value at 2% O(2). Decreases in mesophyll conductance at 21% O(2) for P. milioides and P. schenckii were similar to that for tall fescue. On the other hand, loss of CO(2) in CO(2)-free air, estimated by extrapolating the CO(2) response curve to zero CO(2), was increased from 1.8 to 6.5 milligrams per square decimeter per hour in tall fescue as O(2) was raised from 2-21%. Loss of CO(2) was less than 1 milligram per square decimeter per hour for P. milioides and P. schenckii and was unaffected by O(2). The results suggest that the reduced O(2) response in P. milioides and P. schenckii is due to a lower loss of CO(2) in the light rather than less inhibition of carboxylation by O(2), since the decrease in carboxylation efficiency at

  6. High resolution record of millet cultivation during the Bronze Age around Lake le Bourget (French Alps). Is there any climatic control?

    NASA Astrophysics Data System (ADS)

    Jacob, J.; Disnar, J. R.; Arnaud, F.; Billaud, Y.; Chapron, E.; Sicre, M.-A.; Boscardin, R.

    2009-04-01

    Our understanding of past interactions between the development of human societies, the evolution of climate and associated changes in ecosystems and landscape dynamics is conditioned by the acquisition of high resolution records within which specific tracers allow us estimating variability. The recent development of a molecular biomarker (miliacin) specific of Panicum miliaceum (common millet) associated with the determination of a biomarker allowing to track soil erosion in the sediments of Lake le Bourget (French Alps; [1], [2]) expands the possibilities afforded by organic geochemistry applied to sedimentary archives to unravel these interactions. Within the frame of the Pygmalion project (ANR Blanc, France) we improved the previous miliacin record from Lake le Bourget sediments [1] to reach an infra-decadal resolution for the 2000-600 BC time period that covers the Bronze Age. Miliacin is detected for the first time in sediment samples dated back to ca. 1700 BC, in agreement with the supposed date of introduction of P. miliaceum in the region. Miliacin concentration is low (ca. 20 ng.g-1) during the 1700-1400 BC interval and then rises to values up to 300 ng.g-1 at 850 BC before the strong decrease to 20 ng.g-1 at 750 BC imputable to the abandonment of palaffitic habitats due to a climatic deterioration at the Bronze Age/Iron Age transition. In addition to this general trend, miliacin concentration shows century-scale variations in the 1700-800 BC interval that share similarities with other records. Two periods of miliacin high concentrations at 950 and 850 BC coincide with high densities of dendrochronological dates acquired on wooden piles and with two periods of lake level lowering. The comparison of miliacin evolution in Lake le Bourget with the high resolution alkenone-derived sea surface temperature (SST) record obtained in the North Atlantic off Iceland [3] shows striking coincidences. Previous studies showed that periods of elevated SSTs in this area

  7. [Effects of Cu2+ stress on DNA polymorphism of genome in foxtail millet of different genotypes].

    PubMed

    Zhang, Yi-Xian; Fu, Ya-Ping; Xiao, Zhi-Hua; Zhang, Xi-Wen; Li, Ping

    2013-10-01

    Cu2+ is an essential element for plant growth, and is one of the major elements in the environment. In order to investigate the physiological characteristics and geno-toxicity effects of foxtail millet (Setaria italica (L) Beauv) under different Cu2+ stress, four genotypes of foxtail millet (Zhaogu, Huangmi, An06, D2-8) from Shanxi, China were cultivated for 30 days in a pot filled with soil of with different mass concentrations of Cu2+ (0, 50, 100, 200, 400 mg.kg-l). Effects of Cu2+ stress on DNA damage of genome in foxtail millet were studied using random amplified polymorphic DNA (RAPD) , and the contents of soluble sugar, proline and MDA were tested. The result showed that the content of soluble sugar had a trend of initial increased followed by decline in all four foxtail millet seedlings in response to the rising Cu2+ concentration, and the maximum value was 50 mg.kg-1. At Cu2 concentrations of 200 mg. kg-1 or more, the soluble sugar content in the four kinds of millet showed an average reduction of 32.44% to 56.5% compared to that of the control group. The result showed that proline synthesis was enhanced at low concentrations (less than 50 mg.kg-1) , but inhibited at high concentrations (more than 100 mg.kg-1), and the contents of MDA in the four genotypes of foxtail millet were significantly increased compared with the control group (P <0. 05). The changes occurring in random amplified polymorphic DNA profiles of the four genotypes of foxtail millet following Cu' treatment included loss of normal bands, appearance of new bands and variation in band intensity compared to the plantlet without treatment, showing that Cu2+ significantly affected the stability of the genomic DNA in the cells of millet seedlings. Additionally, the effect of DNA polymorphism changes was dose-dependent with the Cu2+ concentration. The different genotypes of millet showed different response in the physiological and genetic damage under Cu2+ stress. The change of DNA polymorphism

  8. Response of millet and sorghum to a varying water supply around the primary and nodal roots

    PubMed Central

    Rostamza, M.; Richards, R. A.; Watt, M.

    2013-01-01

    Background and Aims Cereals have two root systems. The primary system originates from the embryo when the seed germinates and can support the plant until it produces grain. The nodal system can emerge from stem nodes throughout the plant's life; its value for yield is unclear and depends on the environment. The aim of this study was to test the role of nodal roots of sorghum and millet in plant growth in response to variation in soil moisture. Sorghum and millet were chosen as both are adapted to dry conditions. Methods Sorghum and millet were grown in a split-pot system that allowed the primary and nodal roots to be watered separately. Key Results When primary and nodal roots were watered (12 % soil water content; SWC), millet nodal roots were seven times longer than those of sorghum and six times longer than millet plants in dry treatments, mainly from an 8-fold increase in branch root length. When soil was allowed to dry in both compartments, millet nodal roots responded and grew 20 % longer branch roots than in the well-watered control. Sorghum nodal roots were unchanged. When only primary roots received water, nodal roots of both species emerged and elongated into extremely dry soil (0·6–1·5 % SWC), possibly with phloem-delivered water from the primary roots in the moist inner pot. Nodal roots were thick, short, branchless and vertical, indicating a tropism that was more pronounced in millet. Total nodal root length increased in both species when the dry soil was covered with plastic, suggesting that stubble retention or leaf mulching could facilitate nodal roots reaching deeper moist layers in dry climates. Greater nodal root length in millet than in sorghum was associated with increased shoot biomass, water uptake and water use efficiency (shoot mass per water). Millet had a more plastic response than sorghum to moisture around the nodal roots due to (1) faster growth and progression through ontogeny for earlier nodal root branch length and (2

  9. An endophytic fungus isolated from finger millet (Eleusine coracana) produces anti-fungal natural products

    PubMed Central

    Mousa, Walaa K.; Schwan, Adrian; Davidson, Jeffrey; Strange, Philip; Liu, Huaizhi; Zhou, Ting; Auzanneau, France-Isabelle; Raizada, Manish N.

    2015-01-01

    Finger millet is an ancient African cereal crop, domesticated 7000 years ago in Ethiopia, reaching India at 3000 BC. Finger millet is reported to be resistant to various fungal pathogens including Fusarium sp. We hypothesized that finger millet may host beneficial endophytes (plant-colonizing microbes) that contribute to the antifungal activity. Here we report the first isolation of endophyte(s) from finger millet. Five distinct fungal species were isolated from roots and predicted taxonomically based on 18S rDNA sequencing. Extracts from three putative endophytes inhibited growth of F. graminearum and three other pathogenic Fusarium species. The most potent anti-Fusarium strain (WF4, predicted to be a Phoma sp.) was confirmed to behave as an endophyte using pathogenicity and confocal microscopy experiments. Bioassay-guided fractionation of the WF4 extract identified four anti-fungal compounds, viridicatol, tenuazonic acid, alternariol, and alternariol monomethyl ether. All the purified compounds caused dramatic breakage of F. graminearum hyphae in vitro. These compounds have not previously been reported to have anti-Fusarium activity. None of the compounds, except for tenuazonic acid, have previously been reported to be produced by Phoma. We conclude that the ancient, disease-tolerant crop, finger millet, is a novel source of endophytic anti-fungal natural products. This paper suggests the value of the crops grown by subsistence farmers as sources of endophytes and their natural products. Application of these natural chemicals to solve real world problems will require further validation. PMID:26539183

  10. Inference of domestication history and differentiation between early- and late-flowering varieties in pearl millet.

    PubMed

    Dussert, Y; Snirc, A; Robert, T

    2015-04-01

    Pearl millet (Pennisetum glaucum) is a staple crop in Sahelian Africa. Farmers usually grow varieties with different cycle lengths and complementary functions in Sahelian agrosystems. Both the level of genetic differentiation of these varieties and the domestication history of pearl millet have been poorly studied. We investigated the neutral genetic diversity and population genetic structure of early- and late-flowering domesticated and wild pearl millet populations using 18 microsatellite loci and 8 nucleotide sequences. Strikingly, early- and late-flowering domesticated varieties were not differentiated over their whole distribution area, despite a clear difference in their isolation-by-distance pattern. Conversely, our data brought evidence for two well-differentiated genetic pools in wild pearl millet, allowing us to test scenarios with different numbers and origins of domestication using approximate Bayesian computation (ABC). The ABC analysis showed the likely existence of asymmetric migration between wild and domesticated populations. The model choice procedure indicated that a single domestication from the eastern wild populations was the more likely scenario to explain the polymorphism patterns observed in cultivated pearl millet.

  11. Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots

    PubMed Central

    Passot, Sixtine; Gnacko, Fatoumata; Moukouanga, Daniel; Lucas, Mikaël; Guyomarc’h, Soazig; Ortega, Beatriz Moreno; Atkinson, Jonathan A.; Belko, Marème N.; Bennett, Malcolm J.; Gantet, Pascal; Wells, Darren M.; Guédon, Yann; Vigouroux, Yves; Verdeil, Jean-Luc; Muller, Bertrand; Laplaze, Laurent

    2016-01-01

    Pearl millet plays an important role for food security in arid regions of Africa and India. Nevertheless, it is considered an orphan crop as it lags far behind other cereals in terms of genetic improvement efforts. Breeding pearl millet varieties with improved root traits promises to deliver benefits in water and nutrient acquisition. Here, we characterize early pearl millet root system development using several different root phenotyping approaches that include rhizotrons and microCT. We report that early stage pearl millet root system development is characterized by a fast growing primary root that quickly colonizes deeper soil horizons. We also describe root anatomical studies that revealed three distinct types of lateral roots that form on both primary roots and crown roots. Finally, we detected significant variation for two root architectural traits, primary root lenght and lateral root density, in pearl millet inbred lines. This study provides the basis for subsequent genetic experiments to identify loci associated with interesting early root development traits in this important cereal. PMID:27379124

  12. Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots.

    PubMed

    Passot, Sixtine; Gnacko, Fatoumata; Moukouanga, Daniel; Lucas, Mikaël; Guyomarc'h, Soazig; Ortega, Beatriz Moreno; Atkinson, Jonathan A; Belko, Marème N; Bennett, Malcolm J; Gantet, Pascal; Wells, Darren M; Guédon, Yann; Vigouroux, Yves; Verdeil, Jean-Luc; Muller, Bertrand; Laplaze, Laurent

    2016-01-01

    Pearl millet plays an important role for food security in arid regions of Africa and India. Nevertheless, it is considered an orphan crop as it lags far behind other cereals in terms of genetic improvement efforts. Breeding pearl millet varieties with improved root traits promises to deliver benefits in water and nutrient acquisition. Here, we characterize early pearl millet root system development using several different root phenotyping approaches that include rhizotrons and microCT. We report that early stage pearl millet root system development is characterized by a fast growing primary root that quickly colonizes deeper soil horizons. We also describe root anatomical studies that revealed three distinct types of lateral roots that form on both primary roots and crown roots. Finally, we detected significant variation for two root architectural traits, primary root lenght and lateral root density, in pearl millet inbred lines. This study provides the basis for subsequent genetic experiments to identify loci associated with interesting early root development traits in this important cereal. PMID:27379124

  13. An endophytic fungus isolated from finger millet (Eleusine coracana) produces anti-fungal natural products.

    PubMed

    Mousa, Walaa K; Schwan, Adrian; Davidson, Jeffrey; Strange, Philip; Liu, Huaizhi; Zhou, Ting; Auzanneau, France-Isabelle; Raizada, Manish N

    2015-01-01

    Finger millet is an ancient African cereal crop, domesticated 7000 years ago in Ethiopia, reaching India at 3000 BC. Finger millet is reported to be resistant to various fungal pathogens including Fusarium sp. We hypothesized that finger millet may host beneficial endophytes (plant-colonizing microbes) that contribute to the antifungal activity. Here we report the first isolation of endophyte(s) from finger millet. Five distinct fungal species were isolated from roots and predicted taxonomically based on 18S rDNA sequencing. Extracts from three putative endophytes inhibited growth of F. graminearum and three other pathogenic Fusarium species. The most potent anti-Fusarium strain (WF4, predicted to be a Phoma sp.) was confirmed to behave as an endophyte using pathogenicity and confocal microscopy experiments. Bioassay-guided fractionation of the WF4 extract identified four anti-fungal compounds, viridicatol, tenuazonic acid, alternariol, and alternariol monomethyl ether. All the purified compounds caused dramatic breakage of F. graminearum hyphae in vitro. These compounds have not previously been reported to have anti-Fusarium activity. None of the compounds, except for tenuazonic acid, have previously been reported to be produced by Phoma. We conclude that the ancient, disease-tolerant crop, finger millet, is a novel source of endophytic anti-fungal natural products. This paper suggests the value of the crops grown by subsistence farmers as sources of endophytes and their natural products. Application of these natural chemicals to solve real world problems will require further validation. PMID:26539183

  14. Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication.

    PubMed

    Clotault, Jérémy; Thuillet, Anne-Céline; Buiron, Marylène; De Mita, Stéphane; Couderc, Marie; Haussmann, Bettina I G; Mariac, Cédric; Vigouroux, Yves

    2012-04-01

    The plant domestication process is associated with considerable modifications of plant phenotype. The identification of the genetic basis of this adaptation is of great interest for evolutionary biology. One of the methods used to identify such genes is the detection of signatures of selection. However, domestication is generally associated with major demographic effects. It is therefore crucial to disentangle the effects of demography and selection on diversity. In this study, we investigated selection in a flowering time pathway during domestication of pearl millet. We first used a random set of 20 genes to model pearl millet domestication using approximate Bayesian computation. This analysis showed that a model with exponential growth and wild-cultivated gene flow was well supported by our data set. Under this model, the domestication date of pearl millet is estimated at around 4,800 years ago. We assessed selection in 15 pearl millet DNA sequences homologous to flowering time genes and showed that these genes underwent selection more frequently than expected. We highlighted significant signatures of selection in six pearl millet flowering time genes associated with domestication or improvement of pearl millet. Moreover, higher deviations from neutrality were found for circadian clock-associated genes. Our study provides new insights into the domestication process of pearl millet and shows that a category of genes of the flowering pathway were preferentially selected during pearl millet domestication.

  15. A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica).

    PubMed

    Jia, Guanqing; Huang, Xuehui; Zhi, Hui; Zhao, Yan; Zhao, Qiang; Li, Wenjun; Chai, Yang; Yang, Lifang; Liu, Kunyan; Lu, Hengyun; Zhu, Chuanrang; Lu, Yiqi; Zhou, Congcong; Fan, Danlin; Weng, Qijun; Guo, Yunli; Huang, Tao; Zhang, Lei; Lu, Tingting; Feng, Qi; Hao, Hangfei; Liu, Hongkuan; Lu, Ping; Zhang, Ning; Li, Yuhui; Guo, Erhu; Wang, Shujun; Wang, Suying; Liu, Jinrong; Zhang, Wenfei; Chen, Guoqiu; Zhang, Baojin; Li, Wei; Wang, Yongfang; Li, Haiquan; Zhao, Baohua; Li, Jiayang; Diao, Xianmin; Han, Bin

    2013-08-01

    Foxtail millet (Setaria italica) is an important grain crop that is grown in arid regions. Here we sequenced 916 diverse foxtail millet varieties, identified 2.58 million SNPs and used 0.8 million common SNPs to construct a haplotype map of the foxtail millet genome. We classified the foxtail millet varieties into two divergent groups that are strongly correlated with early and late flowering times. We phenotyped the 916 varieties under five different environments and identified 512 loci associated with 47 agronomic traits by genome-wide association studies. We performed a de novo assembly of deeply sequenced genomes of a Setaria viridis accession (the wild progenitor of S. italica) and an S. italica variety and identified complex interspecies and intraspecies variants. We also identified 36 selective sweeps that seem to have occurred during modern breeding. This study provides fundamental resources for genetics research and genetic improvement in foxtail millet.

  16. Optimization of weaning mix based on malted and extruded pearl millet and barley.

    PubMed

    Balasubramanian, S; Kaur, Jaspreet; Singh, Deepak

    2014-04-01

    Weaning mix was developed using extrudates of plain and malted pearl millet (Pennisetum typhoides) and barley (Hordeum vulgare) flour. Central composite rotatable design (CCRD) with four independent variables PME (pearl millet extrudates), PMME (pearl millet malt extrudates), BE (barley extrudates), BME (barley malt extrudates) at five level and five dependent variables, i.e. lightness, peak viscosity (PV), water solubility index (WSI), water absorption index (WAI) and overall acceptability (OAA) scores, were used to conduct the experiments. Highly acceptable weaning mix was obtained by combining optimized ingredients with constant level of skim milk powder (SMP) 25%, WPC-70 5%, sugar 6% and refined vegetable oil 4 ml 100 g(-1) mix. The optimized level of ingredients was PME 20.77%, PMME 7.39%, BE 20.99%, BME 6.53% with 81.3% desirability. The nutrient content of optimized weaning mix was in accordance with the standards specified by PFA, 2004. PMID:24741161

  17. Proximate and Ultimate Analyses of Bagasse, Sorghum and Millet Straws as Precursors for Active Carbons

    NASA Astrophysics Data System (ADS)

    Lori, J. A.; Lawal, A. O.; Ekanem, E. J.

    This study reports the proximate and ultimate characteristics of bagasse, sorghum and millet straws in relation to their suitability for producing highly porous carbon. The results of ad hoc samples indicated, that particle size has a decisive influence on the proximate characteristics of bagasse, sorghum and millet straws. The effects of particle size on weight loss characteristics; rates of dehydration and de-volatilization of the carbon precursors were used to assess particle sizes that may be appropriate for carbonization. Particle sizes of 425-1180 µm are thus, suggested to be the most desirable, for the production of good quality porous carbon. This range of particles of bagasse, sorghum and millet straws were associated with diminishing ash contents. However, the optimum particle size of the cellulosic materials that is expected to yield highly porous carbon with minimum ash contents is 1180 µm.

  18. Algerian pearl millet ( Pennisetum glaucum L.) contains XIP but not TAXI and TLXI type xylanase inhibitors.

    PubMed

    Mokrane, Hind; Gebruers, Kurt; Beaugrand, Johnny; Proost, Paul; Nadjemi, Boubekeur; Belhanèche-Bensemra, Naima; Courtin, Christophe M; Delcour, Jan A

    2009-06-24

    An XIP (xylanase inhibiting protein) type xylanase inhibitor was purified from Algerian pearl millet ( Pennisetum glaucum L.) grains and characterized for the first time. Cation exchange and affinity chromatography with immobilized Trichoderma longibrachiatum glycoside hydrolase (GH) family 11 xylanase resulted in electrophoretically pure protein with a molecular mass of 27-29 kDa and a pI value of 6.7. The experimentally determined N-terminal amino acid sequence of the purified XIP protein is 87.5%, identical to that of sorghum ( Sorghum bicolor L.) XIP and 79.2% identical to that of wheat ( Triticum aestivum L.) XIP-I. The biochemical properties of pearl millet XIP are comparable to those described earlier for sorghum XIP, except for the higher specific activity toward a T. longibrachiatum GH family 11 xylanase. On the basis of immunoblot neither TAXI nor TLXI type xylanase inhibitors were detected in pearl millet grains.

  19. Rheological properties of refined wheat - millet flour based dough under thermo-mechanical stress.

    PubMed

    Chakraborty, Subir K; Tiwari, Anu; Mishra, Atishay; Singh, Alok

    2015-05-01

    Designed experiments were conducted to study the rheological properties of baking dough prepared from different refined wheat flour (RWF) - barnyard millet blends with varying amount of water (WA), salt and sugar. Dough was subjected to thermo-mechanical stress in Mixolab, in which rheological properties were recorded in terms of five different torques. Second order polynomial models were developed using response surface methodology (RSM) to understand the effect of input variables (WA, barnyard millet, salt and sugar; all expressed as per cent of base flour) on torques recorded by Mixolab. Optimum values of input variables were obtained with constraints based on torque values which represented the qualities of acceptable bread dough. The models predicted that a dough with 57, 26, 1.8 and 3.3% of water, barnyard millet, salt and sugar, respectively, can be used for bread baking purposes.

  20. Revealing a 5,000-y-old beer recipe in China.

    PubMed

    Wang, Jiajing; Liu, Li; Ball, Terry; Yu, Linjie; Li, Yuanqing; Xing, Fulai

    2016-06-01

    The pottery vessels from the Mijiaya site reveal, to our knowledge, the first direct evidence of in situ beer making in China, based on the analyses of starch, phytolith, and chemical residues. Our data reveal a surprising beer recipe in which broomcorn millet (Panicum miliaceum), barley (Hordeum vulgare), Job's tears (Coix lacryma-jobi), and tubers were fermented together. The results indicate that people in China established advanced beer-brewing technology by using specialized tools and creating favorable fermentation conditions around 5,000 y ago. Our findings imply that early beer making may have motivated the initial translocation of barley from the Western Eurasia into the Central Plain of China before the crop became a part of agricultural subsistence in the region 3,000 y later. PMID:27217567

  1. Revealing a 5,000-y-old beer recipe in China.

    PubMed

    Wang, Jiajing; Liu, Li; Ball, Terry; Yu, Linjie; Li, Yuanqing; Xing, Fulai

    2016-06-01

    The pottery vessels from the Mijiaya site reveal, to our knowledge, the first direct evidence of in situ beer making in China, based on the analyses of starch, phytolith, and chemical residues. Our data reveal a surprising beer recipe in which broomcorn millet (Panicum miliaceum), barley (Hordeum vulgare), Job's tears (Coix lacryma-jobi), and tubers were fermented together. The results indicate that people in China established advanced beer-brewing technology by using specialized tools and creating favorable fermentation conditions around 5,000 y ago. Our findings imply that early beer making may have motivated the initial translocation of barley from the Western Eurasia into the Central Plain of China before the crop became a part of agricultural subsistence in the region 3,000 y later.

  2. Genetic Linkage Mapping and Segregation Distortion in a Three-Generation Four-Founder Population of Panicum vigatum (L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.), a warm season, C4, perennial grass, is one of the predominant grass species of the North American tall grass prairies. It is viewed as a high-potential bioenergy feedstock species because it can produce large amounts of lignocellulosic material with relatively few ...

  3. Range-wide genomic variation and population structure of switchgrass (Panicum virgatum L.) measured using genotyping-by-sequencing (GBS)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Geographic patterns of genetic variation are shaped by historical and contemporary processes including migration, genetic drift, and natural selection. Natural populations of Panicum virgatum, a warm-season (C4) perennial grass and emerging bioenergy crop, are found in a variety of habitats that va...

  4. Switchgrass (Panicum virgatum L.) genotypes differ between coastal sites and inland road corridors in the Northeastern US

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a North American grass that exhibits vast genetic diversity across its geographic range. In the Northeast, switchgrass was restricted to a narrow zone adjacent to the coastal salt marsh, but current populations inhabit inland road verges raising questions about t...

  5. Population structure and association mapping of yield contributing agronomic traits in foxtail millet.

    PubMed

    Gupta, Sarika; Kumari, Kajal; Muthamilarasan, Mehanathan; Parida, Swarup Kumar; Prasad, Manoj

    2014-06-01

    Association analyses accounting for population structure and relative kinship identified eight SSR markers ( p < 0.01) showing significant association ( R (2) = 18 %) with nine agronomic traits in foxtail millet. Association mapping is an efficient tool for identifying genes regulating complex traits. Although association mapping using genomic simple sequence repeat (SSR) markers has been successfully demonstrated in many agronomically important crops, very few reports are available on marker-trait association analysis in foxtail millet. In the present study, 184 foxtail millet accessions from diverse geographical locations were genotyped using 50 SSR markers representing the nine chromosomes of foxtail millet. The genetic diversity within these accessions was examined using a genetic distance-based and a general model-based clustering method. The model-based analysis using 50 SSR markers identified an underlying population structure comprising five sub-populations which corresponded well with distance-based groupings. The phenotyping of plants was carried out in the field for three consecutive years for 20 yield contributing agronomic traits. The linkage disequilibrium analysis considering population structure and relative kinship identified eight SSR markers (p < 0.01) on different chromosomes showing significant association (R (2) = 18 %) with nine agronomic traits. Four of these markers were associated with multiple traits. The integration of genetic and physical map information of eight SSR markers with their functional annotation revealed strong association of two markers encoding for phospholipid acyltransferase and ubiquitin carboxyl-terminal hydrolase located on the same chromosome (5) with flag leaf width and grain yield, respectively. Our findings on association mapping is the first report on Indian foxtail millet germplasm and this could be effectively applied in foxtail millet breeding to further uncover marker-trait associations with a large number of

  6. Agrobacterium-mediated transformation of finger millet (Eleusine coracana (L.) Gaertn.) using shoot apex explants.

    PubMed

    Ceasar, S Antony; Ignacimuthu, S

    2011-09-01

    A new Agrobacterium-mediated transformation system was developed for finger millet using shoot apex explants. The Agrobacterium strain LBA4404 harboring binary vector pCAMBIA1301, which contained hygromycin phosphotransferase (hptII) as selectable marker gene and β-glucuronidase (GUS) as reporter gene, was used for optimization of transformation conditions. Two finger millet genotypes, GPU 45 and CO 14, were used in this study. The optimal conditions for the Agrobacterium-mediated transformation of finger millet were found to be the co-cultivation of explants obtained on the 16th day after callus induction (DACI), exposure of explants for 30 min to agrobacterial inoculum and 3 days of co-cultivation on filter paper placed on medium supplemented with 100 μM acetosyringone (AS). Addition of 100 μM L: -cysteine in the selection medium enhanced the frequency of transformation and transgenic plant recovery. Both finger millet genotypes were transformed by Agrobacterium. A frequency of 19% transient expression with 3.8% stable transformation was achieved in genotype GPU 45 using optimal conditions. Five stably transformed plants were fully characterized by Southern blot analysis. A segregation analysis was also performed in four R(1) progenies, which showed normal Mendelian pattern of transgene segregation. The inheritance of transgenes in R(1) progenies was also confirmed by Southern blot analysis. This is the first report on Agrobacterium-mediated transformation of finger millet. This study underpins the introduction of numerous agronomically important genes into the genome of finger millet in the future.

  7. Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses.

    PubMed

    Lata, Charu; Gupta, Sarika; Prasad, Manoj

    2013-09-01

    Foxtail millet is one of the oldest domesticated diploid C4 Panicoid crops having a comparatively small genome size of approximately 515 Mb, short life cycle, and inbreeding nature. Its two species, Setaria italica (domesticated) and Setaria viridis (wild progenitor), have characteristics that classify them as excellent model systems to examine several aspects of architectural, evolutionary, and physiological importance in Panicoid grasses especially the biofuel crops such as switchgrass and napiergrass. Foxtail millet is a staple crop used extensively for food and fodder in parts of Asia and Africa. In its long history of cultivation, it has been adapted to arid and semi-arid areas of Asia, North Africa, South and North America. Foxtail millet has one of the largest collections of cultivated as well as wild-type germplasm rich with phenotypic variations and hence provides prospects for association mapping and allele-mining of elite and novel variants to be incorporated in crop improvement programs. Most of the foxtail millet accessions can be primarily abiotic stress tolerant particularly to drought and salinity, and therefore exploiting these agronomic traits can enhance its efficacy in marker-aided breeding as well as in genetic engineering for abiotic stress tolerance. In addition, the release of draft genome sequence of foxtail millet would be useful to the researchers worldwide in not only discerning the molecular basis of biomass production in biofuel crops and the methods to improve it, but also for the introgression of beneficial agronomically important characteristics in foxtail millet as well as in related Panicoid bioenergy grasses.

  8. Photosynthesis, Leaf Anatomy, and Morphology of Progeny from Hybrids between C(3) and C(3)/C(4)Panicum Species.

    PubMed

    Bouton, J H; Brown, R H; Evans, P T; Jernstedt, J A

    1986-02-01

    Species in the Laxa group of Panicum have C(3) or C(3)/C(4) photosynthesis based on leaf anatomical and CO(2) exchange characteristics. Hybrids were previously made between C(3)/C(4) and C(3) species in this group (RH Brown et al. 1985 Plant Physiol 77: 653-658). In this paper, CO(2) exchange, morphological, and leaf anatomical characteristics of F(2) or F(5) progeny from colchicine-induced amphiploids of C(3)/C(4) x C(3) hybrids (Panicum milioides Nees ex Trin. [C(3)/C(4)] x Panicum laxum Mez [C(3)] and Panicum spathellosum Doell [C(3)/C(4)] x Panicum boliviense Hack. [C(3)]) were studied.There were no differences found in morphology or physiology between the amphiploids and the F(1) hybrids from which they were produced. In the segregating progeny, CO(2) compensation concentration and photorespiration values typical of C(3), but not of C(3)/C(4) plants, were recovered. Progeny were found from both crosses which possessed O(2) inhibition of apparent photosynthesis typical of the parents, and in the case of the P. milioides x P. laxum cross, leaf anatomy and overall plant morphology typical of the parents were observed in some progeny. The progeny were found to possess recombinations of various traits associated with reduced photorespiration, so that no correlation existed among O(2) inhibition of apparent photosynthesis, CO(2) compensation concentration, and leaf anatomical traits. One plant was especially noteworthy in possessing leaf anatomy typical of C(3)/C(4) plants, but with CO(2) exchange characteristics of C(3) plants.

  9. Antihepatotoxic Effect and Metabolite Profiling of Panicum turgidum Extract via UPLC-qTOF-MS

    PubMed Central

    Farag, Mohamed A.; El Fishawy, Ahlam M.; El-Toumy, Sayed A.; Amer, Khadiga F.; Mansour, Ahmed M.; Taha, Hala E.

    2016-01-01

    Background: Panicum turgidum, desert grass, has not reported any detailed phytochemical or biological study as yet Objective: To establish P. turgidum secondary metabolite profile and to assess its antihepatotoxic effect Materials and Methods: Ultra-performance liquid chromatography (UPLC) coupled to quadrupole high-resolution time of flight mass spectrometry (qTOF-MS) was used for large-scale secondary metabolites profiling in P. turgidum extract, alongside assessing median lethal dose (LD50) and hepatoprotective effect against carbon tetrachloride (CCl4) intoxication Results: A total of 39 metabolites were identified with flavonoids as the major class present as O/C-glycosides of luteolin, apigenin, isorhamnetin and naringenin, most of which are first time to be reported in Panicum sp. Antihepatotoxic effect of P. turgidum crude extract was revealed via improving several biochemical marker levels and mitigation against oxidative stress in the serum and liver tissues, compared with CCl4 intoxicated group and further confirmed by histopathological examination. Conclusion: This study reveals that P. turgidum, enriched in C-flavonoids, presents a novel source of safe antihepatotoxic agents and further demonstrates the efficacy of UPLC-MS metabolomics in the field of natural products drug discovery. SUMMARY UPLC coupled to qTOF-MS was used for large scale secondary metabolites profiling in P. turgidum.A total of 39 metabolites were identified with flavonoids amounting as the major metabolite class.Anti-hepatotoxic effect of P. turgidum extract was revealed via several biochemical markers and histopathological examination.This study reveals that P. turgidum, enriched in C-flavonoids, present a novel source of antihepatotoxic agents. Abbreviations used: UPLC: Ultra-performance liquid chromatography (UPLC), LD50: median lethal dose, MDA: malondialdehyde, GSH: glutathione reductase, CAT: catalase, SOD: superoxide dismutase, ALT: alanine aminotransferase, AST: aspartate

  10. Effect of germination and autoclaving of sprouted finger millet and kidney beans on cyanide content.

    PubMed

    Chove, Bernard E; Mamiro, Peter R S

    2010-10-01

    Cyanide contents of locally purchased brown finger millet (Eleusine corocana L. Gaertner) and brown speckled kidney bean seeds (Phaseolus vulgaries var. Rose Coco) were determined using raw, germinated and autoclaved samples. The aim was to establish the extent of cyanide content increase resulting from the germination process and the effectiveness of the autoclaving process on the reduction of cyanide levels in the samples, for safety considerations. Autoclaving was carried out at 121degree C for 20 minutes. It was found that germination increased the cyanide content by 2.11 to 2.14 fold in finger millet for laboratory processed samples. In the case of kidney beans the increment was 1.76 to 1.77 fold for laboratory samples. The increments for field processed samples were in the same range as those for laboratory samples. Autoclaving reduced the cyanide content to between 61.8 and 65.9 % of the original raw contents for finger millet and between 56.6 to 57.8% in the case of kidney beans. The corresponding reductions for field samples were also found to be within the same ranges as the laboratory processed samples. It was concluded that autoclaving significantly reduced the cyanide levels in germinated finger millet and kidney beans.

  11. Effect of γ radiation processing on fungal growth and quality characteristcs of millet grains.

    PubMed

    Mahmoud, Nagat S; Awad, Sahar H; Madani, Rayan M A; Osman, Fahmi A; Elmamoun, Khalid; Hassan, Amro B

    2016-05-01

    The aim of this study was to evaluate the effect of gamma radiation processing of millet grains on fungal incidence, germination, free fatty acids content, protein solubility, digestible protein, and antinutritional factors (tannin and phytic acid). The grains were exposed to gamma radiation at doses 0.25, 0.5, 0.75, 1.0, and 2.0 kGy. Obtained results revealed that radiation of millet grains at a dose level higher than 0.5 kGy caused significant (P < 0.05) reduction on the percentage of fungal incidence and the free fatty acid of the seeds, while, no significant change in the germination capacity was observed of the grains after radiation. Additionally, the radiation process caused significant (P < 0.05) reduction on both tannins and phytic acid content and gradual increment on in vitro protein digestibility of the grains. On the other hand, the treatments significantly (P < 0.05) increased the protein solubility of the grains. Obtained results indicate that gamma irradiation might improve the quality characteristics of millet grains, and can be used as a postharvest method for disinfestations and decontamination of millet grains.

  12. Seeded-yet-sterile biomass feedstocks: Kinggrass and pearl millet-napiergrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Kinggrass (Pennisetum purpureum Schumach. x P. glaucum [L.] R. Br.) and Pearl Millet-Napiergrass (PMN; P. glaucum x P. purpureum) are unique among energy grasses as 'Seeded-yet-Sterile' feedstocks, derived from fertile parents capable of producing significant quantities of hybrid seed while being st...

  13. Assessment of aflatoxigenic Aspergillus and other fungi in millet and sesame from Plateau State, Nigeria

    PubMed Central

    Ezekiel, C.N.; Udom, I.E.; Frisvad, J.C.; Adetunji, M.C.; Houbraken, J.; Fapohunda, S.O.; Samson, R.A.; Atanda, O.O.; Agi-Otto, M.C.; Onashile, O.A.

    2014-01-01

    Sixteen fonio millet and 17 sesame samples were analysed for incidence of moulds, especially aflatoxigenic Aspergillus species, in order to determine the safety of both crops to consumers, and to correlate aflatoxin levels in the crops with levels produced by toxigenic isolates on laboratory medium. Diverse moulds including Alternaria, Aspergillus, Cercospora, Fusarium, Mucor, Penicillium, Rhizopus and Trichoderma were isolated. Aspergillus was predominantly present in both crops (46–48%), and amongst the potentially aflatoxigenic Aspergillus species, A. flavus recorded the highest incidence (68% in fonio millet; 86% in sesame kernels). All A. parvisclerotigenus isolates produced B and G aflatoxins in culture while B aflatoxins were produced by only 39% and 20% of A. flavus strains isolated from the fonio millet and sesame kernels, respectively. Aflatoxin concentrations in fonio millet correlated inversely (r = −0.55; p = 0.02) with aflatoxin levels produced by toxigenic isolates on laboratory medium, but no correlation was observed in the case of the sesame samples. Both crops, especially sesame, may not be suitable substrates for aflatoxin biosynthesis. This is the first report on A. parvisclerotigenus in sesame. PMID:24772370

  14. Effect of germination and autoclaving of sprouted finger millet and kidney beans on cyanide content.

    PubMed

    Chove, Bernard E; Mamiro, Peter R S

    2010-10-01

    Cyanide contents of locally purchased brown finger millet (Eleusine corocana L. Gaertner) and brown speckled kidney bean seeds (Phaseolus vulgaries var. Rose Coco) were determined using raw, germinated and autoclaved samples. The aim was to establish the extent of cyanide content increase resulting from the germination process and the effectiveness of the autoclaving process on the reduction of cyanide levels in the samples, for safety considerations. Autoclaving was carried out at 121degree C for 20 minutes. It was found that germination increased the cyanide content by 2.11 to 2.14 fold in finger millet for laboratory processed samples. In the case of kidney beans the increment was 1.76 to 1.77 fold for laboratory samples. The increments for field processed samples were in the same range as those for laboratory samples. Autoclaving reduced the cyanide content to between 61.8 and 65.9 % of the original raw contents for finger millet and between 56.6 to 57.8% in the case of kidney beans. The corresponding reductions for field samples were also found to be within the same ranges as the laboratory processed samples. It was concluded that autoclaving significantly reduced the cyanide levels in germinated finger millet and kidney beans. PMID:24409633

  15. Effect of γ radiation processing on fungal growth and quality characteristcs of millet grains.

    PubMed

    Mahmoud, Nagat S; Awad, Sahar H; Madani, Rayan M A; Osman, Fahmi A; Elmamoun, Khalid; Hassan, Amro B

    2016-05-01

    The aim of this study was to evaluate the effect of gamma radiation processing of millet grains on fungal incidence, germination, free fatty acids content, protein solubility, digestible protein, and antinutritional factors (tannin and phytic acid). The grains were exposed to gamma radiation at doses 0.25, 0.5, 0.75, 1.0, and 2.0 kGy. Obtained results revealed that radiation of millet grains at a dose level higher than 0.5 kGy caused significant (P < 0.05) reduction on the percentage of fungal incidence and the free fatty acid of the seeds, while, no significant change in the germination capacity was observed of the grains after radiation. Additionally, the radiation process caused significant (P < 0.05) reduction on both tannins and phytic acid content and gradual increment on in vitro protein digestibility of the grains. On the other hand, the treatments significantly (P < 0.05) increased the protein solubility of the grains. Obtained results indicate that gamma irradiation might improve the quality characteristics of millet grains, and can be used as a postharvest method for disinfestations and decontamination of millet grains. PMID:27247763

  16. The Genetic Basis for Inflorescence Variation Between Foxtail and Green Millet (Poaceae)

    PubMed Central

    Doust, Andrew N.; Devos, Katrien M.; Gadberry, Mike D.; Gale, Mike D.; Kellogg, Elizabeth A.

    2005-01-01

    Grass species differ in many aspects of inflorescence architecture, but in most cases the genetic basis of the morphological difference is unknown. To investigate the genes underlying the morphology in one such instance, we undertook a developmental and QTL analysis of inflorescence differences between the cereal grain foxtail millet and its presumed progenitor green millet. Inflorescence differences between these two species are the result of changes in primary branch number and density, spikelet number, and bristle (sterile branchlet) number; these differences also account for inflorescence variation within the clade of 300+ species that share the presence of bristles in the inflorescence. Fourteen replicated QTL were detected for the four inflorescence traits, and these are suggested to represent genes that control differences between the species. Comparative mapping using common markers from rice and maize allowed a number of candidate genes from maize to be localized to QTL regions in the millet genome. Searches of regions of the sequenced rice genome orthologous to QTL regions on foxtail millet identified a number of transcription factors and hormone pathway genes that may be involved in control of inflorescence branching. PMID:15654107

  17. Influence of germination on bioaccessible iron and calcium in pearl millet (Pennisetum typhoideum).

    PubMed

    Suma, P Florence; Urooj, Asna

    2014-05-01

    Pearl millet is the staple for economically poorer section of the world's population and improving its mineral bioaccessibility is one of the important approaches to promote its utilization. In the absence of any data on the bioaccessible mineral content from commercially available millet, two varieties namely Kalukombu (native) and Maharastra Rabi Bajra (hybrid) were germinated and its effect on the bioaccessible iron and calcium content was explored using an in-vitro method which simulates gastrointestinal digestion. The millet was germinated for 72 h to facilitate maximum mineral extraction. The bioaccessibility of iron and calcium was considerably enhanced upon sprouting. This higher bioaccessibility could be attributed to decrease in antinutritional factors like phytate and oxalate as a result of germination. Changes in mineral and antinutrient content during sprouting led to significant variations in the antinutrient/mineral molar ratios which had a positive impact on the bioaccessible mineral content. Use of tap water for soaking prior to germination revealed contamination of the millet with iron. Contaminant iron in Kalukombu variety appeared to be less accessible; while the same was potentially bioaccessible in Maharashtra Rabi Bajra variety. Hence bioaccessibility of iron depends on the form in which it is present. The actual bioaccessibility of contaminated iron needs to be further investigated. PMID:24803707

  18. Assessment of aflatoxigenic Aspergillus and other fungi in millet and sesame from Plateau State, Nigeria.

    PubMed

    Ezekiel, C N; Udom, I E; Frisvad, J C; Adetunji, M C; Houbraken, J; Fapohunda, S O; Samson, R A; Atanda, O O; Agi-Otto, M C; Onashile, O A

    2014-03-01

    Sixteen fonio millet and 17 sesame samples were analysed for incidence of moulds, especially aflatoxigenic Aspergillus species, in order to determine the safety of both crops to consumers, and to correlate aflatoxin levels in the crops with levels produced by toxigenic isolates on laboratory medium. Diverse moulds including Alternaria, Aspergillus, Cercospora, Fusarium, Mucor, Penicillium, Rhizopus and Trichoderma were isolated. Aspergillus was predominantly present in both crops (46-48%), and amongst the potentially aflatoxigenic Aspergillus species, A. flavus recorded the highest incidence (68% in fonio millet; 86% in sesame kernels). All A. parvisclerotigenus isolates produced B and G aflatoxins in culture while B aflatoxins were produced by only 39% and 20% of A. flavus strains isolated from the fonio millet and sesame kernels, respectively. Aflatoxin concentrations in fonio millet correlated inversely (r = -0.55; p = 0.02) with aflatoxin levels produced by toxigenic isolates on laboratory medium, but no correlation was observed in the case of the sesame samples. Both crops, especially sesame, may not be suitable substrates for aflatoxin biosynthesis. This is the first report on A. parvisclerotigenus in sesame. PMID:24772370

  19. Proso Millet Harvest: A Comparison of Conventional Harvest and Direct Harvest with a Stripper Header

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This research was conducted to determine if proso millet can be harvested with a stripper header. Stripper headers use extremely fast rotating metal teeth to rip the seed off the plant and leave the majority of residue standing in the field as opposed to cutting off the entire plant and running tha...

  20. The Effect of Seed-borne Mycoflora from Sorghum and Foxtail Millet Seeds on Germination and Disease Transmission

    PubMed Central

    Yago, Jonar I.; Bae, Soon-do; Yoon, Young-Nam; Kim, Hyun-Ju; Nam, Min-hee

    2011-01-01

    The seed-borne mycoflora of sorghum and foxtail millet collected from different growing areas in South Korea were isolated and taxonomically identified using dry inspection, standard blotter and the agar plate method. We investigated the in vitro and in vivo germination rates of disinfected and non-disinfected seeds of sorghum and foxtail millet using sterilized and unsterilized soil. The percent recovery of seed-borne mycoflora from the seed components of sorghum and foxtail millet seeds was determined and an infection experiment using the dominant species was evaluated for seedling emergence and mortality. A higher number of seed-borne fungi was observed in sorghum compared to that of foxtail millet. Eighteen fungal genera with 34 fungal species were identified from the seeds of sorghum and 13 genera with 22 species were identified from the seeds of foxtail millet. Five dominant species such as Alternaria alternata, Aspergillus flavus, Curvularia lunata, Fusarium moniliforme and Phoma sp. were recorded as seed-borne mycoflora in sorghum and 4 dominant species (Alternaria alternata, Aspergillus flavus, Curvularia lunata, Fusarium moniliforme) were observed in foxtail millet. The in vitro and in vivo germination rates were higher using disinfected seeds and sterilized soil. More seed-borne fungi were recovered from the pericarp compared to the endosperm and seed embryo. The percent recovery of seed-borne fungi ranged from 2.22% to 60.0%, and Alternaria alternata, Curvularia lunata and 4 species of Fusarium were isolated from the endosperm and embryo of sorghum and foxtail millet. Inoculation of the dominant seed-borne fungi showed considerable mortality of seedlings. All the transmitted seed-borne fungi might well be a primary source of infection of sorghum and foxtail millet crops. PMID:22783105

  1. Plants and people from the Early Neolithic to Shang periods in North China

    PubMed Central

    Lee, Gyoung-Ah; Crawford, Gary W.; Liu, Li; Chen, Xingcan

    2007-01-01

    An assemblage of charred plant remains collected from 26 sites in the Yiluo valley of North China as part of an archaeological survey spans the period from the sixth millennium to 1300 calibrated calendrical years (cal) B.C. The plant remains document a long sequence of crops, weeds, and other plants in the country. The results also demonstrate the effectiveness of sediment sampling as part of an archaeological survey. Ten accelerator mass spectrometer (AMS) radiocarbon dates on crop remains inform an assessment of the sequence of agricultural development in the region. Foxtail millet (Setaria italica subsp. italica) was grown during the Early Neolithic period and was the principal crop for at least four millennia. Broomcorn millet (Panicum miliaceum) was significantly less important throughout the sequence. Rice (Oryza sativa) was introduced by 3000 cal B.C. but apparently was not an important local crop. Wheat became a significant crop between 1600 and 1300 cal B.C. The weed flora diversified through time and were dominated by annual grasses, some of which were probably fodder for domesticated animals. The North China farming tradition that emphasized dry crops (millets, wheat, and legumes) with some rice appears to have been established at the latest by the Early Shang (Erligang; 1600–1300 B.C.) period. PMID:17213316

  2. Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.

    PubMed

    Gimode, Davis; Odeny, Damaris A; de Villiers, Etienne P; Wanyonyi, Solomon; Dida, Mathews M; Mneney, Emmarold E; Muchugi, Alice; Machuka, Jesse; de Villiers, Santie M

    2016-01-01

    Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain storage quality and unique ability to thrive in extreme environmental conditions. Since negligible attention has been paid to improving this crop to date, the current study used Next Generation Sequencing (NGS) technologies to develop both Simple Sequence Repeat (SSR) and Single Nucleotide Polymorphism (SNP) markers. Genomic DNA from cultivated finger millet genotypes KNE755 and KNE796 was sequenced using both Roche 454 and Illumina technologies. Non-organelle sequencing reads were assembled into 207 Mbp representing approximately 13% of the finger millet genome. We identified 10,327 SSRs and 23,285 non-homeologous SNPs and tested 101 of each for polymorphism across a diverse set of wild and cultivated finger millet germplasm. For the 49 polymorphic SSRs, the mean polymorphism information content (PIC) was 0.42, ranging from 0.16 to 0.77. We also validated 92 SNP markers, 80 of which were polymorphic with a mean PIC of 0.29 across 30 wild and 59 cultivated accessions. Seventy-six of the 80 SNPs were polymorphic across 30 wild germplasm with a mean PIC of 0.30 while only 22 of the SNP markers showed polymorphism among the 59 cultivated accessions with an average PIC value of 0.15. Genetic diversity analysis using the polymorphic SNP markers revealed two major clusters; one of wild and another of cultivated accessions. Detailed STRUCTURE analysis confirmed this grouping pattern and further revealed 2 sub-populations within wild E. coracana subsp. africana. Both STRUCTURE and genetic diversity analysis assisted with the correct identification of the new germplasm collections. These polymorphic SSR and SNP markers are a significant addition to the existing 82 published SSRs, especially with regard to the previously reported low polymorphism levels in finger millet. Our results also reveal an unexploited finger millet genetic resource that can be included in the regional

  3. Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies

    PubMed Central

    Gimode, Davis; Odeny, Damaris A.; de Villiers, Etienne P.; Wanyonyi, Solomon; Dida, Mathews M.; Mneney, Emmarold E.; Muchugi, Alice; Machuka, Jesse; de Villiers, Santie M.

    2016-01-01

    Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain storage quality and unique ability to thrive in extreme environmental conditions. Since negligible attention has been paid to improving this crop to date, the current study used Next Generation Sequencing (NGS) technologies to develop both Simple Sequence Repeat (SSR) and Single Nucleotide Polymorphism (SNP) markers. Genomic DNA from cultivated finger millet genotypes KNE755 and KNE796 was sequenced using both Roche 454 and Illumina technologies. Non-organelle sequencing reads were assembled into 207 Mbp representing approximately 13% of the finger millet genome. We identified 10,327 SSRs and 23,285 non-homeologous SNPs and tested 101 of each for polymorphism across a diverse set of wild and cultivated finger millet germplasm. For the 49 polymorphic SSRs, the mean polymorphism information content (PIC) was 0.42, ranging from 0.16 to 0.77. We also validated 92 SNP markers, 80 of which were polymorphic with a mean PIC of 0.29 across 30 wild and 59 cultivated accessions. Seventy-six of the 80 SNPs were polymorphic across 30 wild germplasm with a mean PIC of 0.30 while only 22 of the SNP markers showed polymorphism among the 59 cultivated accessions with an average PIC value of 0.15. Genetic diversity analysis using the polymorphic SNP markers revealed two major clusters; one of wild and another of cultivated accessions. Detailed STRUCTURE analysis confirmed this grouping pattern and further revealed 2 sub-populations within wild E. coracana subsp. africana. Both STRUCTURE and genetic diversity analysis assisted with the correct identification of the new germplasm collections. These polymorphic SSR and SNP markers are a significant addition to the existing 82 published SSRs, especially with regard to the previously reported low polymorphism levels in finger millet. Our results also reveal an unexploited finger millet genetic resource that can be included in the regional

  4. Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.

    PubMed

    Gimode, Davis; Odeny, Damaris A; de Villiers, Etienne P; Wanyonyi, Solomon; Dida, Mathews M; Mneney, Emmarold E; Muchugi, Alice; Machuka, Jesse; de Villiers, Santie M

    2016-01-01

    Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain storage quality and unique ability to thrive in extreme environmental conditions. Since negligible attention has been paid to improving this crop to date, the current study used Next Generation Sequencing (NGS) technologies to develop both Simple Sequence Repeat (SSR) and Single Nucleotide Polymorphism (SNP) markers. Genomic DNA from cultivated finger millet genotypes KNE755 and KNE796 was sequenced using both Roche 454 and Illumina technologies. Non-organelle sequencing reads were assembled into 207 Mbp representing approximately 13% of the finger millet genome. We identified 10,327 SSRs and 23,285 non-homeologous SNPs and tested 101 of each for polymorphism across a diverse set of wild and cultivated finger millet germplasm. For the 49 polymorphic SSRs, the mean polymorphism information content (PIC) was 0.42, ranging from 0.16 to 0.77. We also validated 92 SNP markers, 80 of which were polymorphic with a mean PIC of 0.29 across 30 wild and 59 cultivated accessions. Seventy-six of the 80 SNPs were polymorphic across 30 wild germplasm with a mean PIC of 0.30 while only 22 of the SNP markers showed polymorphism among the 59 cultivated accessions with an average PIC value of 0.15. Genetic diversity analysis using the polymorphic SNP markers revealed two major clusters; one of wild and another of cultivated accessions. Detailed STRUCTURE analysis confirmed this grouping pattern and further revealed 2 sub-populations within wild E. coracana subsp. africana. Both STRUCTURE and genetic diversity analysis assisted with the correct identification of the new germplasm collections. These polymorphic SSR and SNP markers are a significant addition to the existing 82 published SSRs, especially with regard to the previously reported low polymorphism levels in finger millet. Our results also reveal an unexploited finger millet genetic resource that can be included in the regional

  5. Photosynthesis of Grass Species Differing in Carbon Dioxide Fixation Pathways : VII. CHROMOSOME NUMBERS, METAPHASE I CHROMOSOME BEHAVIOR, AND MODE OF REPRODUCTION OF PHOTOSYNTHETICALLY DISTINCT PANICUM SPECIES.

    PubMed

    Bouton, J H; Brown, R H; Bolton, J K; Campagnoli, R P

    1981-03-01

    Panicum species of the Laxa group were investigated in a series of published reports and were found to possess C(4), C(3), and intermediate photosynthetic characteristics. Taxonomic and other relationships among these plants, however, are not clear. It was the objective of this investigation to document chromosome number, metaphase I chromosome behavior, and mode of reproduction, including abnormalities in the embryo sac, for these species.Chromosome counts showed a basic number (x) of 10 and ploidy levels of diploid (2n = 2x = 20), tetraploid (2n = 4x = 40), and hexaploid (2n = 6x = 60) in this group of Panicum. One diploid and one tetraploid accession of the C(4) species, Panicum prionitis Griseb., were obtained. Of the intermediate species, Panicum milioides Nees ex Trin. was diploid, Panicum schenckii Hack. was hexaploid, and Panicum decipiens Nees, ex Trin. was found to possess two ploidy levels, one accession being diploid and the other accession being hexaploid. All the C(3) species, which included two accessions of Panicum laxum Sw., three accessions of Panicum hylaeicum Mez., and one accession of Panicum rivulare Trin., were tetraploid.Meiosis was regular with primarily bivalent pairing at metaphase I in all species except the tetraploid accession of P. prionitis which possessed from 4 to 10 tetravalents. Stainable pollen was high in all species, ranging from 70 to 99%. Embryo sac analyses showed a single sac in all plants except the tetraploid accession of P. prionitis, which was found to possess an additional sac at anthesis. An additional sac was also observed in some ovaries of the P. schenckii accession. Self-pollinated seed set was high in all accessions except the diploid accession of P. prionitis and one accession of P. laxum where no seed was set under bagged conditions.This information establishes, within the limits of this collection, a base for future studies on genetic, taxonomic, photosynthetic, and evolutionary relationships among these

  6. Gene flow matters in switchgrass (Panicum virgatum L.), a potential widespread biofuel feedstock.

    PubMed

    Kwit, Charles; Stewart, C Neal

    2012-01-01

    There currently exists a large push for the use, improvement, and expansion via landscape modification of dedicated biofuel crops (feedstocks) in the United States and in many parts of the world. Ecological concerns have been voiced because many biofuel feedstocks exhibit characteristics associated with invasiveness, and due to potential negative consequences of agronomic genes in native wild populations. Seed purity concerns for biofuel feedstock cultivars whose seeds would be harvested in agronomic fields also exist from the agribusiness sector. The common thread underlying these concerns, which have regulatory implications, is gene flow; thus detailed knowledge of gene flow in biofuel crop plants is important in the formulation of environmental risk management plans. Here, we synthesize the current state of knowledge of gene flow in an exemplary biofuel crop, switchgrass (Panicum virgatum L.), which is native to eastern North America and is currently experiencing conventional and technological advances in biomass yields and ethanol production. Surprisingly little is known regarding aspects of switchgrass pollen flow and seed dispersal, and whether native populations of conspecific or congeneric relatives will readily cross with current agronomic switchgrass cultivars. We pose that filling these important gaps will be required to confront the sustainability challenges of widespread planting of biofuel feedstocks.

  7. The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii

    PubMed Central

    Lowry, David B; Hernandez, Kyle; Taylor, Samuel H; Meyer, Eli; Logan, Tierney L; Barry, Kerrie W; Chapman, Jarrod A; Rokhsar, Daniel S; Schmutz, Jeremy; Juenger, Thomas E

    2015-01-01

    The process of plant speciation often involves the evolution of divergent ecotypes in response to differences in soil water availability between habitats. While the same set of traits is frequently associated with xeric/mesic ecotype divergence, it is unknown whether those traits evolve independently or if they evolve in tandem as a result of genetic colocalization either by pleiotropy or genetic linkage. The self-fertilizing C4 grass species Panicum hallii includes two major ecotypes found in xeric (var. hallii) or mesic (var. filipes) habitats. We constructed the first linkage map for P. hallii by genotyping a reduced representation genomic library of an F2 population derived from an intercross of var. hallii and filipes. We then evaluated the genetic architecture of divergence between these ecotypes through quantitative trait locus (QTL) mapping. Overall, we mapped QTLs for nine morphological traits that are involved in the divergence between the ecotypes. QTLs for five key ecotype-differentiating traits all colocalized to the same region of linkage group five. Leaf physiological traits were less divergent between ecotypes, but we still mapped five physiological QTLs. We also discovered a two-locus Dobzhansky–Muller hybrid incompatibility. Our study suggests that ecotype-differentiating traits may evolve in tandem as a result of genetic colocalization. PMID:25252269

  8. The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.

    PubMed

    Lowry, David B; Hernandez, Kyle; Taylor, Samuel H; Meyer, Eli; Logan, Tierney L; Barry, Kerrie W; Chapman, Jarrod A; Rokhsar, Daniel S; Schmutz, Jeremy; Juenger, Thomas E

    2015-01-01

    The process of plant speciation often involves the evolution of divergent ecotypes in response to differences in soil water availability between habitats. While the same set of traits is frequently associated with xeric/mesic ecotype divergence, it is unknown whether those traits evolve independently or if they evolve in tandem as a result of genetic colocalization either by pleiotropy or genetic linkage. The self-fertilizing C4 grass species Panicum hallii includes two major ecotypes found in xeric (var. hallii) or mesic (var. filipes) habitats. We constructed the first linkage map for P. hallii by genotyping a reduced representation genomic library of an F2 population derived from an intercross of var. hallii and filipes. We then evaluated the genetic architecture of divergence between these ecotypes through quantitative trait locus (QTL) mapping. Overall, we mapped QTLs for nine morphological traits that are involved in the divergence between the ecotypes. QTLs for five key ecotype-differentiating traits all colocalized to the same region of linkage group five. Leaf physiological traits were less divergent between ecotypes, but we still mapped five physiological QTLs. We also discovered a two-locus Dobzhansky-Muller hybrid incompatibility. Our study suggests that ecotype-differentiating traits may evolve in tandem as a result of genetic colocalization. PMID:25252269

  9. The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.

    PubMed

    Lowry, David B; Hernandez, Kyle; Taylor, Samuel H; Meyer, Eli; Logan, Tierney L; Barry, Kerrie W; Chapman, Jarrod A; Rokhsar, Daniel S; Schmutz, Jeremy; Juenger, Thomas E

    2015-01-01

    The process of plant speciation often involves the evolution of divergent ecotypes in response to differences in soil water availability between habitats. While the same set of traits is frequently associated with xeric/mesic ecotype divergence, it is unknown whether those traits evolve independently or if they evolve in tandem as a result of genetic colocalization either by pleiotropy or genetic linkage. The self-fertilizing C4 grass species Panicum hallii includes two major ecotypes found in xeric (var. hallii) or mesic (var. filipes) habitats. We constructed the first linkage map for P. hallii by genotyping a reduced representation genomic library of an F2 population derived from an intercross of var. hallii and filipes. We then evaluated the genetic architecture of divergence between these ecotypes through quantitative trait locus (QTL) mapping. Overall, we mapped QTLs for nine morphological traits that are involved in the divergence between the ecotypes. QTLs for five key ecotype-differentiating traits all colocalized to the same region of linkage group five. Leaf physiological traits were less divergent between ecotypes, but we still mapped five physiological QTLs. We also discovered a two-locus Dobzhansky-Muller hybrid incompatibility. Our study suggests that ecotype-differentiating traits may evolve in tandem as a result of genetic colocalization.

  10. [Impacts of salt stress on the growth and physiological characteristics of Panicum virgatum seedlings].

    PubMed

    Fan, Xi-Feng; Hou, Xin-Cun; Zhu, Yi; Wu, Ju-Ying

    2012-06-01

    An experiment was conducted in an artificial climate chamber to study the growth and physiological characteristics of switchgrass (Panicum virgatum) seedlings exposed to 0, 50, 100, 150, and 200 mmol x L(-1) of NaCl solutions. With the increasing concentration of the NaCl, the seedling growth was obviously inhibited. The plant height decreased, leaves became smaller, photosynthetic leaf area and net photosynthetic rate reduced, and dry matter accumulation decreased significantly, presenting the general traits of glycophyte. Meanwhile, the seedlings also showed relatively high salt tolerance. After exposed to 200 mmol x L(-1) of NaCl for 30 days, the seedlings still survived, with the green leaf area per plant and net photosynthetic rate being 491.9 cm2 and 0.93 micromol CO2 x m(-2) x s(-1), respectively. In this experiment, the salt tolerance threshold for P. virgatum was 178.6 mmol L(-1) when taking 50% drop in biomass as the standard.

  11. The capacity of switchgrass (Panicum virgatum) to degrade atrazine in a phytoremediation setting.

    PubMed

    Murphy, Ian J; Coats, Joel R

    2011-03-01

    Atrazine is a widely used herbicide in agriculture. Non-point source contamination of groundwater and drinking water may pose a significant threat to humans, wildlife, and the environment. Phytoremediation may provide a cost-effective strategy for reducing non-point source contamination of atrazine from agricultural runoff. Previous studies have shown that the rhizosphere of the native prairie grass, switchgrass (Panicum virgatum) is capable of enhancing the degradation of atrazine in soils. Biodegradation also may occur within the plant biomass; however, the extent to which this occurs has not been studied. We hypothesize that switchgrass has the capacity to degrade atrazine in vivo, in addition to the microbial biotransformation that occurs in its rhizosphere. The goals of this study were to characterize the ability of switchgrass to take up atrazine from soils, quantify the amount of biodegradation occurring in the plant, and quantify the amount of degradation occurring in the rhizosphere. Switchgrass seedlings were transplanted into autoclaved and non-autoclaved sand containing 10 µg/g atrazine in sand. Treatments were sacrificed on days 0, 3, and 7. Sand and plant tissue extracts were analyzed by gas chromatography to determine the concentration of atrazine and metabolites in sand and plant tissues. Results demonstrated that leaf biomass is capable of detoxifying atrazine, because metabolites were present in leaf material and not in the sand or root.

  12. Colic caused by Panicum maximum toxicosis in equidae in northern Brazil.

    PubMed

    Cerqueira, Valíria D; Riet-Correa, Gabriela; Barbosa, José D; Duarte, Marcos D; Oliveira, Carlos M C; de Oliveira, Carlos A; Tokarnia, Carlos; Lee, Stephen T; Riet-Correa, Franklin

    2009-11-01

    In the Amazon region of northern Brazil, Panicum maximum cultivars Mombaça, Tanzânia, and Massai cause severe colic and death in horses and mules. The disease occurs in the rainy season, when sprouting pastures are grazed by equidae. In the 8 separate disease outbreaks studied, a total of 52 out of 153 equidae were affected, including 19 that died (10 mules and 9 horses). Clinical signs were colic and abdominal dilatation, with a clinical manifestation period of 12 hr to 4 days. Serum activities of gamma-glutamyl transferase and aspartate aminotransferase were within reference intervals; however, serum urea nitrogen and creatinine concentrations were occasionally elevated. The primary gross and histologic lesions were observed in the digestive system. The stomach, small intestine, and large intestine had severe hemorrhages and occasional mucosal erosions and ulcerations. Ulceration and hemorrhage of the urinary bladder were rarely observed. Histologic examination revealed diffuse lymphoplasmacytic gastritis and enteritis with severe congestion, hemorrhage, and occasional epithelial necrosis and ulceration. Lymphocellular necrosis was occasionally observed within gut-associated lymphoid tissue. Tubular nephrosis occurred in some animals. Degeneration and occasional necrosis of bile duct epithelial cells and degeneration of hepatocytes were observed in the liver. Toxic pastures were negative for diosgenin- and yamogenin-based saponins, and oxalate concentrations were within reference intervals for the species. The toxin or toxins causing disease and the reason for the toxicity of the plant in the northern region are unknown.

  13. Use of Silica Sol Step Gradients to Prepare Bundle Sheath and Mesophyll Chloroplasts from Panicum maximum.

    PubMed

    Walbot, V

    1977-07-01

    The first method for the direct separation of mesophyll and bundle sheath chloroplasts from whole tissue homogenates of a C(4) plant is described. Centrifugation of mixed chloroplast preparations from Panicum maximum through low viscosity silica sol gradients effectively separates large, starch-containing chloroplasts from smaller plastids. The large chloroplasts are judged to be bundle sheath chloroplasts on the basis of microscopic appearance, the presence of starch grains, the protein complement displayed on sodium dodecyl sulfate acrylamide gels, and the exclusive localization of ribulose bisphosphate carboxylase activity in these plastids. As a measure of intactness both the large (bundle sheath) and small (mesophyll) chloroplasts contain glyceralde-hyde-3-phosphate NADP-dependent dehydrogenase activity that is greatly enhanced by plastid lysis and both chloroplast preparations are impermeable to deoxyribonuclease. Chloroplast enzyme activities are inhibited by silica sol due to the Mg(2+) chelating activity of this reagent. However, well washed chloroplasts separated on silica gradients had enzyme activities similar to reported values in which silica sol gradients were not used. PMID:16660019

  14. Reduction of polyphenol and phytic acid content of pearl millet grains by malting and blanching.

    PubMed

    Archana; Sehgal, S; Kawatra, A

    1999-01-01

    This work was undertaken to evaluate the changes in polyphenol and phytic acid content in malted and blanched pearl millet grains. For malting, grains were steeped for 16 hours, germinated for 48 or 72 hours and then kilned at 50 degrees C for 24 hours. Blanching was done for 30 seconds in boiling water at 98 degrees C. Results indicated that blanching resulted in significant reduction in polyphenol (28%) and phytic acids (38%). Destruction of polyphenols (38 to 48%) and phytic acid (46 to 50%) was significantly higher in grains subjected to malting than blanching: The overall results suggested that malting with 72 hours of germination was most effective in reducing the antinutrient levels of pearl millet grains.

  15. Finger millet (Eleucine coracana) flour as a vehicle for fortification with zinc.

    PubMed

    Tripathi, Bhumika; Platel, Kalpana

    2010-01-01

    Millets, being less expensive compared to cereals and the staple for the poorer sections of population, could be the choice for fortification with micronutrients such as zinc. In view of this, finger millet, widely grown and commonly consumed in southern India, was explored as a vehicle for fortification with zinc in this investigation. Finger millet flour fortified with either zinc oxide or zinc stearate so as to provide 50mg zinc per kg flour, was specifically examined for the bioaccessibility of the fortified mineral, as measured by in vitro simulated gastrointestinal digestion procedure and storage stability. Addition of the zinc salts increased the bioaccessible zinc content by 1.5-3 times that of the unfortified flour. Inclusion of EDTA along with the fortified salt significantly enhanced the bioaccessibility of zinc from the fortified flours, the increase being three-fold. Inclusion of citric acid along with the zinc salt and EDTA during fortification did not have any additional beneficial effect on zinc bioaccessiblity. Moisture and free fatty acid contents of the stored fortified flours indicated the keeping quality of the same, up to 60 days. Both zinc oxide and zinc stearate were equally effective as fortificants, when used in combination with EDTA as a co-fortificant. The preparation of either roti or dumpling from the fortified flours stored up to 60 days did not result in any significant compromise in the bioaccessible zinc content. Thus, the present study has revealed that finger millet flour can effectively be used as a vehicle for zinc fortification to derive additional amounts of bioaccessible zinc, with reasonably good storage stability, to combat zinc deficiency.

  16. Preparation and characterization of foxtail millet bran oil using subcritical propane and supercritical carbon dioxide extraction.

    PubMed

    Shi, Yuzhong; Ma, Yuxiang; Zhang, Ruitin; Ma, Hanjun; Liu, Benguo

    2015-05-01

    The foxtail millet (Setaria italica Beauv) bran oil was extracted with traditional solvent extraction (SE), supercritical carbon dioxide extraction (SCE) and subcritical propane extraction (SPE) and analyzed the yield, physicochemical property, fatty acid profile, tocopherol composition, oil oxidative stability in this study. The yields of foxtail millet bran oil by SE, SCE and SPE were 17.14 %, 19.65 %, 21.79 % of raw material weight (corresponded to 75.54 %, 86.60 %, 96.03 % of the total amount of the oil measured by using Soxhlet extraction), respectively. The effect of the extraction methods on the physicochemical properties (peroxide value, saponification value and color) was significant while the difference in fatty acid profile was negligible based on GC analysis. The major components of vitamin E in the obtained oils were identified as α- and β-tocopherols by HPLC, and SPE was superior to SE and SCE in the extraction of tocopherols. In Rancimat test, the oil obtained by SPE showed the highest oil oxidative stability, which could attribute to its high tocopherol content and low peroxide value. In view of oil quality, SPE employed smaller times and lower pressures compared to SE and SCE. SPE was a suitable and selective method for the extraction of the foxtail millet bran oil.

  17. Malting process optimization for protein digestibility enhancement in finger millet grain.

    PubMed

    Hejazi, Sara Najdi; Orsat, Valérie

    2016-04-01

    Finger millet (Eleusine coracana) is a nutritious, gluten-free, and drought resistant cereal containing high amounts of protein, carbohydrate, and minerals. However, bio-availability of these nutrients is restricted due to the presence of an excessive level of anti-nutrient components, mainly phytic acid, tannin, and oxalate. It has been shown that a well-designed malting/germination process can significantly reduce these anti-nutrients and consequently enhance the nutrient availability. In the present study, the effects of two important germination factors, duration and temperature, on the enhancement of in-vitro protein digestibility of finger millet were thoroughly investigated and optimized. Based on a central composite design, the grains were germinated for 24, 36, and 48 h at 22, 26, and 30 °C. For all factor combinations, protein, peptide, phytic acid, tannin, and oxalate contents were evaluated and digestibility was assessed. It was shown that during the malting/germinating process, both temperature and duration factors significantly influenced the investigated quantities. Germination of finger millet for 48 h at 30 °C increased protein digestibility from 74 % (for native grain) up to 91 %. Besides, it notably decreased phytic acid, tannin, and oxalate contents by 45 %, 46 %, and 29 %, respectively. Linear correlations between protein digestibility and these anti-nutrients were observed. PMID:27413219

  18. No-Cook Process for Ethanol Production Using Indian Broken Rice and Pearl Millet

    PubMed Central

    Gohel, Vipul; Duan, Gang

    2012-01-01

    No-cook process using granular starch hydrolyzing enzyme (GSHE) was evaluated for Indian broken rice and pearl millet. One-factor-at-a-time optimization method was used in ethanol production to identify optimum concentration of GSHE, under yeast fermentation conditions using broken rice and pearl millet as fermentation feedstocks. An acid fungal protease at a concentration of 0.2 kg per metric ton of grain was used along with various dosages of GSHE under yeast fermentation conditions to degrade the grain proteins into free amino nitrogen for yeast growth. To measure the efficacy of GSHE to hydrolyze no-cook broken rice and pearl millet, the chemical composition, fermentation efficiency, and ethanol recovery were determined. In both feedstocks, fermentation efficiency and ethanol recovery obtained through single-step no-cook process were higher than conventional multistep high-temperature process, currently considered the ideal industrial process. Furthermore, the no-cook process can directly impact energy consumption through steam saving and reducing the water cooling capacity needs, compared to conventional high-temperature process. PMID:22518148

  19. Evaluation of the nutritional characteristics of a finger millet based complementary food.

    PubMed

    Mbithi-Mwikya, Stephen; Van Camp, John; Mamiro, Peter R S; Ooghe, Wilfried; Kolsteren, Patrick; Huyghebaert, Andre

    2002-05-01

    Finger millet (Eleusine coracana), kidney beans (Phaseolus vulgaris), peanuts (Arachis hypogoea), and mango (Mangifera indica) were processed separately and then combined, on the basis of their amino acid scores and energy content, into a complementary food for children of weaning age. The finger millet and kidney beans were processed by germination, autoclaving, and lactic acid fermentation. A mixture containing, on a dry matter basis, 65.2, 19.1, 8.0, and 7.7% of the processed finger millet, kidney beans, peanuts, and mango, respectively, gave a composite protein with an in vitro protein digestibility of 90.2% and an amino acid chemical score of 0.84. This mixture had an energy density of 16.3 kJ.g(-1) of dry matter and a decreased antinutrient content and showed a measurable improvement in the in vitro extractability for calcium, iron, and zinc. A 33% (w/v) pap made from a mix of the processed ingredients had an energy density of 5.4 kJ.g(-1) of pap, which is sufficient to meet the energy requirements of well-nourished children of 6-24 months of age at three servings a day and at the FAO average breast-feeding frequency. PMID:11982437

  20. Nutraceutical Value of Finger Millet [Eleusine coracana (L.) Gaertn.], and Their Improvement Using Omics Approaches.

    PubMed

    Kumar, Anil; Metwal, Mamta; Kaur, Sanveen; Gupta, Atul K; Puranik, Swati; Singh, Sadhna; Singh, Manoj; Gupta, Supriya; Babu, B K; Sood, Salej; Yadav, Rattan

    2016-01-01

    The science of nutritional biology has progressed extensively over the last decade to develop food-based nutraceuticals as a form of highly personalized medicine or therapeutic agent. Finger millet [Eleusine coracana (L.) Gaertn.] is a crop with potentially tremendous but under-explored source of nutraceutical properties as compared to other regularly consumed cereals. In the era of growing divide and drawback of nutritional security, these characteristics must be harnessed to develop finger millet as a novel functional food. In addition, introgression of these traits into other staple crops can improve the well-being of the general population on a global scale. The objective of this review is to emphasize the importance of biofortification of finger millet in context of universal health and nutritional crisis. We have specifically highlighted the role that recent biotechnological advancements have to offer for enrichment of its nutritional value and how these developments can commission to the field of nutritional biology by opening new avenues for future research. PMID:27446162

  1. Analyzing millet price regimes and market performance in Niger with remote sensing data

    NASA Astrophysics Data System (ADS)

    Essam, Timothy Michael

    This dissertation concerns the analysis of staple food prices and market performance in Niger using remotely sensed vegetation indices in the form of normalized differenced vegetation index (NDVI). By exploiting the link between weather-related vegetation production conditions, which serve as a proxy for spatially explicit millet yields and thus millet availability, this study analyzes the potential causal links between NDVI outcomes and millet market performance and presents an empirical approach for predicting changes in market performance based on NDVI outcomes. Overall, the thesis finds that inter-market price spreads and levels of market integration can be reasonably explained by deviations in vegetation index outcomes from the growing season. Negative (positive) NDVI shocks are associated with better (worse) than expected market performance as measured by converging inter-market price spreads. As the number of markets affected by negatively abnormal vegetation production conditions in the same month of the growing season increases, inter-market price dispersion declines. Positive NDVI shocks, however, do not mirror this pattern in terms of the magnitude of inter-market price divergence. Market integration is also found to be linked to vegetation index outcomes as below (above) average NDVI outcomes result in more integrated (segmented) markets. Climate change and food security policies and interventions should be guided by these findings and account for dynamic relationships among market structures and vegetation production outcomes.

  2. Nutraceutical Value of Finger Millet [Eleusine coracana (L.) Gaertn.], and Their Improvement Using Omics Approaches

    PubMed Central

    Kumar, Anil; Metwal, Mamta; Kaur, Sanveen; Gupta, Atul K.; Puranik, Swati; Singh, Sadhna; Singh, Manoj; Gupta, Supriya; Babu, B. K.; Sood, Salej; Yadav, Rattan

    2016-01-01

    The science of nutritional biology has progressed extensively over the last decade to develop food-based nutraceuticals as a form of highly personalized medicine or therapeutic agent. Finger millet [Eleusine coracana (L.) Gaertn.] is a crop with potentially tremendous but under-explored source of nutraceutical properties as compared to other regularly consumed cereals. In the era of growing divide and drawback of nutritional security, these characteristics must be harnessed to develop finger millet as a novel functional food. In addition, introgression of these traits into other staple crops can improve the well-being of the general population on a global scale. The objective of this review is to emphasize the importance of biofortification of finger millet in context of universal health and nutritional crisis. We have specifically highlighted the role that recent biotechnological advancements have to offer for enrichment of its nutritional value and how these developments can commission to the field of nutritional biology by opening new avenues for future research. PMID:27446162

  3. Preparation and characterization of foxtail millet bran oil using subcritical propane and supercritical carbon dioxide extraction.

    PubMed

    Shi, Yuzhong; Ma, Yuxiang; Zhang, Ruitin; Ma, Hanjun; Liu, Benguo

    2015-05-01

    The foxtail millet (Setaria italica Beauv) bran oil was extracted with traditional solvent extraction (SE), supercritical carbon dioxide extraction (SCE) and subcritical propane extraction (SPE) and analyzed the yield, physicochemical property, fatty acid profile, tocopherol composition, oil oxidative stability in this study. The yields of foxtail millet bran oil by SE, SCE and SPE were 17.14 %, 19.65 %, 21.79 % of raw material weight (corresponded to 75.54 %, 86.60 %, 96.03 % of the total amount of the oil measured by using Soxhlet extraction), respectively. The effect of the extraction methods on the physicochemical properties (peroxide value, saponification value and color) was significant while the difference in fatty acid profile was negligible based on GC analysis. The major components of vitamin E in the obtained oils were identified as α- and β-tocopherols by HPLC, and SPE was superior to SE and SCE in the extraction of tocopherols. In Rancimat test, the oil obtained by SPE showed the highest oil oxidative stability, which could attribute to its high tocopherol content and low peroxide value. In view of oil quality, SPE employed smaller times and lower pressures compared to SE and SCE. SPE was a suitable and selective method for the extraction of the foxtail millet bran oil. PMID:25892815

  4. Characterization of Antifungal Natural Products Isolated from Endophytic Fungi of Finger Millet (Eleusine coracana).

    PubMed

    Mousa, Walaa Kamel; Schwan, Adrian L; Raizada, Manish N

    2016-01-01

    Finger millet is an ancient African-Indian crop that is resistant to many pathogens including the fungus, Fusarium graminearum. We previously reported the first isolation of putative fungal endophytes from finger millet and showed that the crude extracts of four strains had anti-Fusarium activity. However, active compounds were isolated from only one strain. The objectives of this study were to confirm the endophytic lifestyle of the three remaining anti-Fusarium isolates, to identify the major underlying antifungal compounds, and to initially characterize the mode(s) of action of each compound. Results of confocal microscopy and a plant disease assay were consistent with the three fungal strains behaving as endophytes. Using bio-assay guided fractionation and spectroscopic structural elucidation, three anti-Fusarium secondary metabolites were purified and characterized. These molecules were not previously reported to derive from fungi nor have antifungal activity. The purified antifungal compounds were: 5-hydroxy 2(3H)-benzofuranone, dehydrocostus lactone (guaianolide sesquiterpene lactone), and harpagoside (an iridoide glycoside). Light microscopy and vitality staining were used to visualize the in vitro interactions between each compound and Fusarium; the results suggested a mixed fungicidal/fungistatic mode of action. We conclude that finger millet possesses fungal endophytes that can synthesize anti-fungal compounds not previously reported as bio-fungicides against F. graminearum. PMID:27598120

  5. Early lignin pathway enzymes and routes to chlorogenic acid in switchgrass (Panicum virgatum L.).

    PubMed

    Escamilla-Treviño, Luis L; Shen, Hui; Hernandez, Timothy; Yin, Yanbin; Xu, Ying; Dixon, Richard A

    2014-03-01

    Studying lignin biosynthesis in Panicum virgatum (switchgrass) has provided a basis for generating plants with reduced lignin content and increased saccharification efficiency. Chlorogenic acid (CGA, caffeoyl quinate) is the major soluble phenolic compound in switchgrass, and the lignin and CGA biosynthetic pathways potentially share intermediates and enzymes. The enzyme hydroxycinnamoyl-CoA: quinate hydroxycinnamoyltransferase (HQT) is responsible for CGA biosynthesis in tobacco, tomato and globe artichoke, but there are no close orthologs of HQT in switchgrass or in other monocotyledonous plants with complete genome sequences. We examined available transcriptomic databases for genes encoding enzymes potentially involved in CGA biosynthesis in switchgrass. The protein products of two hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (HCT) genes (PvHCT1a and PvHCT2a), closely related to lignin pathway HCTs from other species, were characterized biochemically and exhibited the expected HCT activity, preferring shikimic acid as acyl acceptor. We also characterized two switchgrass coumaroyl shikimate 3'-hydroxylase (C3'H) enzymes (PvC3'H1 and PvC3'H2); both of these cytochrome P450s had the capacity to hydroxylate 4-coumaroyl shikimate or 4-coumaroyl quinate to generate caffeoyl shikimate or CGA. Another switchgrass hydroxycinnamoyl transferase, PvHCT-Like1, is phylogenetically distant from HCTs or HQTs, but exhibits HQT activity, preferring quinic acid as acyl acceptor, and could therefore function in CGA biosynthesis. The biochemical features of the recombinant enzymes, the presence of the corresponding activities in plant protein extracts, and the expression patterns of the corresponding genes, suggest preferred routes to CGA in switchgrass.

  6. Review and model-based analysis of factors influencing soil carbon sequestration beneath switchgrass (Panicum virgatum)

    SciTech Connect

    Garten Jr, Charles T

    2012-01-01

    Abstract. A simple, multi-compartment model was developed to predict soil carbon sequestration beneath switchgrass (Panicum virgatum) plantations in the southeastern United States. Soil carbon sequestration is an important component of sustainable switchgrass production for bioenergy because soil organic matter promotes water retention, nutrient supply, and soil properties that minimize erosion. A literature review was included for the purpose of model parameterization and five model-based experiments were conducted to predict how changes in environment (temperature) or crop management (cultivar, fertilization, and harvest efficiency) might affect soil carbon storage and nitrogen losses. Predictions of soil carbon sequestration were most sensitive to changes in annual biomass production, the ratio of belowground to aboveground biomass production, and temperature. Predictions of ecosystem nitrogen loss were most sensitive to changes in annual biomass production, the soil C/N ratio, and nitrogen remobilization efficiency (i.e., nitrogen cycling within the plant). Model-based experiments indicated that 1) soil carbon sequestration can be highly site specific depending on initial soil carbon stocks, temperature, and the amount of annual nitrogen fertilization, 2) response curves describing switchgrass yield as a function of annual nitrogen fertilization were important to model predictions, 3) plant improvements leading to greater belowground partitioning of biomass could increase soil carbon sequestration, 4) improvements in harvest efficiency have no indicated effects on soil carbon and nitrogen, but improve cumulative biomass yield, and 5) plant improvements that reduce organic matter decomposition rates could also increase soil carbon sequestration, even though the latter may not be consistent with desired improvements in plant tissue chemistry to maximize yields of cellulosic ethanol.

  7. Physiological Evaluation of Alkali-Salt Tolerance of Thirty Switchgrass (Panicum virgatum) Lines

    PubMed Central

    Hu, Guofu; Liu, Yiming; Zhang, Xunzhong; Yao, Fengjiao; Huang, Yan; Ervin, Erik H.; Zhao, Bingyu

    2015-01-01

    Soil salt-alkalization is a major limiting factor for crop production in many regions. Switchgrass (Panicum virgatum L.) is a warm-season C4 perennial rhizomatous bunchgrass and a target lignocellulosic biofuel species. The objective of this study was to evaluate relative alkali-salt tolerance among 30 switchgrass lines. Tillers of each switchgrass line were transplanted into pots filled with fine sand. Two months after transplanting, plants at E5 developmental stage were grown in either half strength Hoagland’s nutrient solution with 0 mM Na+ (control) or half strength Hoagland’s nutrient solution with 150 mM Na+ and pH of 9.5 (alkali-salt stress treatment) for 20 d. Alkali-salt stress damaged cell membranes [higher electrolyte leakage (EL) ], reduced leaf relative water content (RWC), net photosynthetic rate (Pn), stomatal conductance (gs), and transpiration rate (Tr). An alkali-salt stress tolerance trait index (ASTTI) for each parameter was calculated based on the ratio of the value under alkali-salt stress and the value under non-stress conditions for each parameter of each line. Relative alkali-salt tolerance was determined based on principal components analysis and cluster analysis of the physiological parameters and their ASTTI values. Significant differences in alkali-salt stress tolerance were found among the 30 lines. Lowland lines TEM-SEC, Alamo, TEM-SLC and Kanlow were classified as alkali-salt tolerant. In contrast, three lowland lines (AM-314/MS-155, BN-13645-64) and two upland lines (Caddo and Blackwell-1) were classified as alkali-salt sensitive. The results suggest wide variations exist in alkali-salt stress tolerance among the 30 switchgrass lines. The approach of using a combination of principal components and cluster analysis of the physiological parameters and related ASTTI is feasible for evaluating alkali-salt tolerance in switchgrass. PMID:26146987

  8. Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production

    PubMed Central

    2013-01-01

    Background Lignocellulosic biomass is one of the most promising renewable and clean energy resources to reduce greenhouse gas emissions and dependence on fossil fuels. However, the resistance to accessibility of sugars embedded in plant cell walls (so-called recalcitrance) is a major barrier to economically viable cellulosic ethanol production. A recent report from the US National Academy of Sciences indicated that, “absent technological breakthroughs”, it was unlikely that the US would meet the congressionally mandated renewable fuel standard of 35 billion gallons of ethanol-equivalent biofuels plus 1 billion gallons of biodiesel by 2022. We here describe the properties of switchgrass (Panicum virgatum) biomass that has been genetically engineered to increase the cellulosic ethanol yield by more than 2-fold. Results We have increased the cellulosic ethanol yield from switchgrass by 2.6-fold through overexpression of the transcription factor PvMYB4. This strategy reduces carbon deposition into lignin and phenolic fermentation inhibitors while maintaining the availability of potentially fermentable soluble sugars and pectic polysaccharides. Detailed biomass characterization analyses revealed that the levels and nature of phenolic acids embedded in the cell-wall, the lignin content and polymer size, lignin internal linkage levels, linkages between lignin and xylans/pectins, and levels of wall-bound fucose are all altered in PvMYB4-OX lines. Genetically engineered PvMYB4-OX switchgrass therefore provides a novel system for further understanding cell wall recalcitrance. Conclusions Our results have demonstrated that overexpression of PvMYB4, a general transcriptional repressor of the phenylpropanoid/lignin biosynthesis pathway, can lead to very high yield ethanol production through dramatic reduction of recalcitrance. MYB4-OX switchgrass is an excellent model system for understanding recalcitrance, and provides new germplasm for developing switchgrass cultivars as

  9. Physiological Evaluation of Alkali-Salt Tolerance of Thirty Switchgrass (Panicum virgatum) Lines.

    PubMed

    Hu, Guofu; Liu, Yiming; Zhang, Xunzhong; Yao, Fengjiao; Huang, Yan; Ervin, Erik H; Zhao, Bingyu

    2015-01-01

    Soil salt-alkalization is a major limiting factor for crop production in many regions. Switchgrass (Panicum virgatum L.) is a warm-season C4 perennial rhizomatous bunchgrass and a target lignocellulosic biofuel species. The objective of this study was to evaluate relative alkali-salt tolerance among 30 switchgrass lines. Tillers of each switchgrass line were transplanted into pots filled with fine sand. Two months after transplanting, plants at E5 developmental stage were grown in either half strength Hoagland's nutrient solution with 0 mM Na+ (control) or half strength Hoagland's nutrient solution with 150 mM Na+ and pH of 9.5 (alkali-salt stress treatment) for 20 d. Alkali-salt stress damaged cell membranes [higher electrolyte leakage (EL)], reduced leaf relative water content (RWC), net photosynthetic rate (Pn), stomatal conductance (gs), and transpiration rate (Tr). An alkali-salt stress tolerance trait index (ASTTI) for each parameter was calculated based on the ratio of the value under alkali-salt stress and the value under non-stress conditions for each parameter of each line. Relative alkali-salt tolerance was determined based on principal components analysis and cluster analysis of the physiological parameters and their ASTTI values. Significant differences in alkali-salt stress tolerance were found among the 30 lines. Lowland lines TEM-SEC, Alamo, TEM-SLC and Kanlow were classified as alkali-salt tolerant. In contrast, three lowland lines (AM-314/MS-155, BN-13645-64) and two upland lines (Caddo and Blackwell-1) were classified as alkali-salt sensitive. The results suggest wide variations exist in alkali-salt stress tolerance among the 30 switchgrass lines. The approach of using a combination of principal components and cluster analysis of the physiological parameters and related ASTTI is feasible for evaluating alkali-salt tolerance in switchgrass. PMID:26146987

  10. De Novo Transcriptome Assembly for the Tropical Grass Panicum maximum Jacq

    PubMed Central

    Toledo-Silva, Guilherme; Cardoso-Silva, Claudio Benicio; Jank, Liana; Souza, Anete Pereira

    2013-01-01

    Guinea grass (Panicum maximum Jacq.) is a tropical African grass often used to feed beef cattle, which is an important economic activity in Brazil. Brazil is the leader in global meat exportation because of its exclusively pasture-raised bovine herds. Guinea grass also has potential uses in bioenergy production due to its elevated biomass generation through the C4 photosynthesis pathway. We generated approximately 13 Gb of data from Illumina sequencing of P. maximum leaves. Four different genotypes were sequenced, and the combined reads were assembled de novo into 38,192 unigenes and annotated; approximately 63% of the unigenes had homology to other proteins in the NCBI non-redundant protein database. Functional classification through COG (Clusters of Orthologous Groups), GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) analyses showed that the unigenes from Guinea grass leaves are involved in a wide range of biological processes and metabolic pathways, including C4 photosynthesis and lignocellulose generation, which are important for cattle grazing and bioenergy production. The most abundant transcripts were involved in carbon fixation, photosynthesis, RNA translation and heavy metal cellular homeostasis. Finally, we identified a number of potential molecular markers, including 5,035 microsatellites (SSRs) and 346,456 single nucleotide polymorphisms (SNPs). To the best of our knowledge, this is the first study to characterize the complete leaf transcriptome of P. maximum using high-throughput sequencing. The biological information provided here will aid in gene expression studies and marker-assisted selection-based breeding research in tropical grasses. PMID:23923022

  11. SNP Discovery with EST and NextGen Sequencing in Switchgrass (Panicum virgatum L.)

    PubMed Central

    Ersoz, Elhan S.; Wright, Mark H.; Pangilinan, Jasmyn L.; Sheehan, Moira J.; Tobias, Christian; Casler, Michael D.; Buckler, Edward S.; Costich, Denise E.

    2012-01-01

    Although yield trials for switchgrass (Panicum virgatum L.), a potentially high value biofuel feedstock crop, are currently underway throughout North America, the genetic tools for crop improvement in this species are still in the early stages of development. Identification of high-density molecular markers, such as single nucleotide polymorphisms (SNPs), that are amenable to high-throughput genotyping approaches, is the first step in a quantitative genetics study of this model biofuel crop species. We generated and sequenced expressed sequence tag (EST) libraries from thirteen diverse switchgrass cultivars representing both upland and lowland ecotypes, as well as tetraploid and octoploid genomes. We followed this with reduced genomic library preparation and massively parallel sequencing of the same samples using the Illumina Genome Analyzer technology platform. EST libraries were used to generate unigene clusters and establish a gene-space reference sequence, thus providing a framework for assembly of the short sequence reads. SNPs were identified utilizing these scaffolds. We used a custom software program for alignment and SNP detection and identified over 149,000 SNPs across the 13 short-read sequencing libraries (SRSLs). Approximately 25,000 additional SNPs were identified from the entire EST collection available for the species. This sequencing effort generated data that are suitable for marker development and for estimation of population genetic parameters, such as nucleotide diversity and linkage disequilibrium. Based on these data, we assessed the feasibility of genome wide association mapping and genomic selection applications in switchgrass. Overall, the SNP markers discovered in this study will help facilitate quantitative genetics experiments and greatly enhance breeding efforts that target improvement of key biofuel traits and development of new switchgrass cultivars. PMID:23049744

  12. Phosphate translocator of mesophyll and bundle sheath chloroplasts of a C sub 4 plant, Panicum miliaceum L

    SciTech Connect

    Ohnishi, Junichi; Fluegge, U.I.; Heldt, H.W. )

    1989-12-01

    The phosphate translocator was identified in the envelope membranes of both mesophyll and bundle sheath chloroplasts of Panicum miliaceum L. by labeling with (1,2-{sup 3}H)1,2-(2,2{prime}-disulfo-4,4{prime}-diisothiocyano)diphenylethane (({sup 3}H)H{sub 2}DIDS) and by using SDS-PAGE. Assay of {sup 32}Pi uptake by the chloroplasts showed that the phosphate translocators of both types of chloroplasts have a higher affinity for phosphoenolpyruvate than the C{sub 3} counterpart and can be regarded as C{sub 4} types.

  13. Amino acid profiles after sprouting, autoclaving, and lactic acid fermentation of finger millet (Eleusine coracan) and kidney beans (Phaseolus vulgaris L.).

    PubMed

    Mbithi-Mwikya, S; Ooghe, W; Van Camp, J; Ngundi, D; Huyghebaert, A

    2000-08-01

    Seeds of finger millet (Eleucine coracan (L.) Gaertner) and kidney beans (Phaseolus vulgaris L.) were sprouted, autoclaved, and fermented during the processing of a weaning (complementary) food for children. Relative changes in individual amino acids with processing were evaluated. Finger millet and kidney beans both showed a good percentage of essential to total amino acids, with 44. 2-44.9% in finger millet and 44.2-45.1% in kidney beans, when compared to 33.9% for the FAO/WHO reference protein for 2-5 year old children. Sprouting resulted in a significant decrease in lysine in kidney beans. Autoclaving caused significant decreases in histidine, while fermentation significantly decreased phenylalanine and increased tryptophan in finger millet. The leucine-to-lysine ratio, which is an indicator of the pellagragenic character of a protein, was significantly improved in finger millet by both sprouting and fermentation.

  14. Amino acid profiles after sprouting, autoclaving, and lactic acid fermentation of finger millet (Eleusine coracan) and kidney beans (Phaseolus vulgaris L.).

    PubMed

    Mbithi-Mwikya, S; Ooghe, W; Van Camp, J; Ngundi, D; Huyghebaert, A

    2000-08-01

    Seeds of finger millet (Eleucine coracan (L.) Gaertner) and kidney beans (Phaseolus vulgaris L.) were sprouted, autoclaved, and fermented during the processing of a weaning (complementary) food for children. Relative changes in individual amino acids with processing were evaluated. Finger millet and kidney beans both showed a good percentage of essential to total amino acids, with 44. 2-44.9% in finger millet and 44.2-45.1% in kidney beans, when compared to 33.9% for the FAO/WHO reference protein for 2-5 year old children. Sprouting resulted in a significant decrease in lysine in kidney beans. Autoclaving caused significant decreases in histidine, while fermentation significantly decreased phenylalanine and increased tryptophan in finger millet. The leucine-to-lysine ratio, which is an indicator of the pellagragenic character of a protein, was significantly improved in finger millet by both sprouting and fermentation. PMID:10956072

  15. Switchgrass (Panicum virgatum L.) Intraspecific Variation and Thermotolerance Classification Using in Vitro Seed Germination Assay

    DOE PAGESBeta

    Seepaul, Ramdeo; Macoon, Bisoondat; Reddy, K. Raja; Baldwin, Brian

    2011-01-01

    Cardinal temperatures for plant processes have been used for thermotolerance screening of genotypes, geoclimatic adaptability determination and phenological prediction. Current simulation models for switchgrass (Panicum virgatum L.) utilize single cardinal temperatures across genotypes for both vegetative and reproductive processes although in-tra-specific variation exists among genotypes. An experiment was conducted to estimate the cardinal temperatures for seed germination of 14 diverse switchgrass genotypes and to classify genotypes for temperature tolerance. Stratified seeds of each genotype were germinated at eight constant temperatures from 10 °C to 45 °C under a constant light intensity of 35 μmol m-2s-1 for 12 hd-1. Germination wasmore » recorded at 6-h intervals in all treatments. Maximum seed germination (MSG) and germination rate (GR), estimated by fitting Sigmoidal function to germination-time series data, varied among genotypes. Quadratic and bilinear models best described the MSG and GR responses to temperature, respectively. The mean cardinal temperatures, Tmin, Topt, and Tmax, were 8.1, 26.6, and 45.1 °C for MSG and 11.1, 33.1, and 46.0 °C for GR, respectively. Cardinal temperatures for MSG and GR; however, varied significantly among genotypes. Genotypes were classified as sensitive (Cave-in-Rock, Dacotah, Expresso, Forestburg, Kanlow, Sunburst, Trailblazer, and Tusca), intermediate (Alamo, Blackwell, Carthage, Shawnee, and Shelter) and tolerant (Summer) to high temperature based on cumulative temperature response index (CTRI) estimated by summing individual response indices estimated from the MSG and GR cardinal temperatures. Similarly, genotypes were also classified as sensitive (Alamo, Blackwell, Carthage, Dacotah, Shawnee, Shelter and Summer), moderately sensitive (Cave-in-rock, Forestburg, Kanlow, Sunburst, and Tusca), moderately tolerant (Trailblazer), and tolerant (Expresso) to low temperatures. The cardinal temperature estimates would

  16. Switchgrass (Panicum virgatum L.) Intraspecific Variation and Thermotolerance Classification Using in Vitro Seed Germination Assay

    SciTech Connect

    Seepaul, Ramdeo; Macoon, Bisoondat; Reddy, K. Raja; Baldwin, Brian

    2011-01-01

    Cardinal temperatures for plant processes have been used for thermotolerance screening of genotypes, geoclimatic adaptability determination and phenological prediction. Current simulation models for switchgrass (Panicum virgatum L.) utilize single cardinal temperatures across genotypes for both vegetative and reproductive processes although in-tra-specific variation exists among genotypes. An experiment was conducted to estimate the cardinal temperatures for seed germination of 14 diverse switchgrass genotypes and to classify genotypes for temperature tolerance. Stratified seeds of each genotype were germinated at eight constant temperatures from 10 °C to 45 °C under a constant light intensity of 35 μmol m-2s-1 for 12 hd-1. Germination was recorded at 6-h intervals in all treatments. Maximum seed germination (MSG) and germination rate (GR), estimated by fitting Sigmoidal function to germination-time series data, varied among genotypes. Quadratic and bilinear models best described the MSG and GR responses to temperature, respectively. The mean cardinal temperatures, Tmin, Topt, and Tmax, were 8.1, 26.6, and 45.1 °C for MSG and 11.1, 33.1, and 46.0 °C for GR, respectively. Cardinal temperatures for MSG and GR; however, varied significantly among genotypes. Genotypes were classified as sensitive (Cave-in-Rock, Dacotah, Expresso, Forestburg, Kanlow, Sunburst, Trailblazer, and Tusca), intermediate (Alamo, Blackwell, Carthage, Shawnee, and Shelter) and tolerant (Summer) to high temperature based on cumulative temperature response index (CTRI) estimated by summing individual response indices estimated from the MSG and GR cardinal temperatures. Similarly, genotypes were also classified as sensitive (Alamo, Blackwell, Carthage, Dacotah, Shawnee, Shelter and Summer), moderately sensitive (Cave-in-rock, Forestburg, Kanlow, Sunburst, and Tusca), moderately tolerant (Trailblazer), and tolerant (Expresso) to

  17. Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.)

    PubMed Central

    2013-01-01

    Background Global warming predictions indicate that temperatures will increase by another 2-6°C by the end of this century. High temperature is a major abiotic stress limiting plant growth and productivity in many areas of the world. Switchgrass (Panicum virgatum L.) is a model herbaceous bioenergy crop, due to its rapid growth rate, reliable biomass yield, minimal requirements of water and nutrients, adaptability to grow on marginal lands and widespread distribution throughout North America. The effect of high temperature on switchgrass physiology, cell wall composition and biomass yields has been reported. However, there is void in the knowledge of the molecular responses to heat stress in switchgrass. Results We conducted long-term heat stress treatment (38°/30°C, day/night, for 50 days) in the switchgrass cultivar Alamo. A significant decrease in the plant height and total biomass was evident in the heat stressed plants compared to controls. Total RNA from control and heat stress samples were used for transcriptome analysis with switchgrass Affymetrix genechips. Following normalization and pre-processing, 5365 probesets were identified as differentially expressed using a 2-fold cutoff. Of these, 2233 probesets (2000 switchgrass unigenes) were up-regulated, and 3132 probesets (2809 unigenes) were down-regulated. Differential expression of 42 randomly selected genes from this list was validated using RT-PCR. Rice orthologs were retrieved for 78.7% of the heat stress responsive switchgrass probesets. Gene ontology (GOs) enrichment analysis using AgriGO program showed that genes related to ATPase regulator, chaperone binding, and protein folding was significantly up-regulated. GOs associated with protein modification, transcription, phosphorus and nitrogen metabolic processes, were significantly down-regulated by heat stress. Conclusions Plausible connections were identified between the identified GOs, physiological responses and heat response phenotype

  18. Exploring Potential of Pearl Millet Germplasm Association Panel for Association Mapping of Drought Tolerance Traits

    PubMed Central

    Sehgal, Deepmala; Skot, Leif; Singh, Richa; Srivastava, Rakesh Kumar; Das, Sankar Prasad; Taunk, Jyoti; Sharma, Parbodh C.; Pal, Ram; Raj, Bhasker; Hash, Charles T.; Yadav, Rattan S.

    2015-01-01

    A pearl millet inbred germplasm association panel (PMiGAP) comprising 250 inbred lines, representative of cultivated germplasm from Africa and Asia, elite improved open-pollinated cultivars, hybrid parental inbreds and inbred mapping population parents, was recently established. This study presents the first report of genetic diversity in PMiGAP and its exploitation for association mapping of drought tolerance traits. For diversity and genetic structure analysis, PMiGAP was genotyped with 37 SSR and CISP markers representing all seven linkage groups. For association analysis, it was phenotyped for yield and yield components and morpho-physiological traits under both well-watered and drought conditions, and genotyped with SNPs and InDels from seventeen genes underlying a major validated drought tolerance (DT) QTL. The average gene diversity in PMiGAP was 0.54. The STRUCTURE analysis revealed six subpopulations within PMiGAP. Significant associations were obtained for 22 SNPs and 3 InDels from 13 genes under different treatments. Seven SNPs associations from 5 genes were common under irrigated and one of the drought stress treatments. Most significantly, an important SNP in putative acetyl CoA carboxylase gene showed constitutive association with grain yield, grain harvest index and panicle yield under all treatments. An InDel in putative chlorophyll a/b binding protein gene was significantly associated with both stay-green and grain yield traits under drought stress. This can be used as a functional marker for selecting high yielding genotypes with ‘stay green’ phenotype under drought stress. The present study identified useful marker-trait associations of important agronomics traits under irrigated and drought stress conditions with genes underlying a major validated DT-QTL in pearl millet. Results suggest that PMiGAP is a useful panel for association mapping. Expression patterns of genes also shed light on some physiological mechanisms underlying pearl millet

  19. Exploring potential of pearl millet germplasm association panel for association mapping of drought tolerance traits.

    PubMed

    Sehgal, Deepmala; Skot, Leif; Singh, Richa; Srivastava, Rakesh Kumar; Das, Sankar Prasad; Taunk, Jyoti; Sharma, Parbodh C; Pal, Ram; Raj, Bhasker; Hash, Charles T; Yadav, Rattan S

    2015-01-01

    A pearl millet inbred germplasm association panel (PMiGAP) comprising 250 inbred lines, representative of cultivated germplasm from Africa and Asia, elite improved open-pollinated cultivars, hybrid parental inbreds and inbred mapping population parents, was recently established. This study presents the first report of genetic diversity in PMiGAP and its exploitation for association mapping of drought tolerance traits. For diversity and genetic structure analysis, PMiGAP was genotyped with 37 SSR and CISP markers representing all seven linkage groups. For association analysis, it was phenotyped for yield and yield components and morpho-physiological traits under both well-watered and drought conditions, and genotyped with SNPs and InDels from seventeen genes underlying a major validated drought tolerance (DT) QTL. The average gene diversity in PMiGAP was 0.54. The STRUCTURE analysis revealed six subpopulations within PMiGAP. Significant associations were obtained for 22 SNPs and 3 InDels from 13 genes under different treatments. Seven SNPs associations from 5 genes were common under irrigated and one of the drought stress treatments. Most significantly, an important SNP in putative acetyl CoA carboxylase gene showed constitutive association with grain yield, grain harvest index and panicle yield under all treatments. An InDel in putative chlorophyll a/b binding protein gene was significantly associated with both stay-green and grain yield traits under drought stress. This can be used as a functional marker for selecting high yielding genotypes with 'stay green' phenotype under drought stress. The present study identified useful marker-trait associations of important agronomics traits under irrigated and drought stress conditions with genes underlying a major validated DT-QTL in pearl millet. Results suggest that PMiGAP is a useful panel for association mapping. Expression patterns of genes also shed light on some physiological mechanisms underlying pearl millet

  20. Grain Yield and Quality of Foxtail Millet (Setaria italica L.) in Response to Tribenuron-Methyl

    PubMed Central

    Ning, Na; Yuan, Xiangyang; Dong, Shuqi; Wen, Yinyuan; Gao, Zhenpan; Guo, Meijun; Guo, Pingyi

    2015-01-01

    Foxtail millet (Setaria italica L.) is cultivated around the world for human and animal consumption. There is no suitable herbicide available for weed control in foxtail millet fields during the post-emergence stage. In this study, we investigated the effect and safety of the post-emergence herbicide tribenuron-methyl (TBM) on foxtail millet in terms of grain yield and quality using a split-plot field design. Field experiments were conducted using two varieties in 2013 and 2014, i.e., high-yielding hybrid Zhangzagu 10 and high-quality conventional Jingu 21. TBM treatments at 11.25 to 90 g ai ha−1 reduced root and shoot biomass and grain yield to varying degrees. In each of the two years, grain yield declined by 50.2% in Zhangzagu 10 with a herbicide dosage of 45 g ai ha−1 and by 45.2% in Jingu 21 with a herbicide dosage of 22.5 g ai ha−1 (recommended dosage). Yield reduction was due to lower grains per panicle, 1000-grain weight, panicle length, and panicle diameter. Grain yield was positively correlated with grains per panicle and 1000-grain weight, but not with panicles ha−1. With respect to grain protein content at 22.5 g ai ha−1, Zhangzagu 10 was similar to the control, whereas Jingu 21 was markedly lower. An increase in TBM dosage led to a decrease in grain Mn, Cu, Fe, and Zn concentrations. In conclusion, the recommended dosage of TBM was relatively safe for Zhangzagu 10, but not for Jingu 21. Additionally, the hybrid variety Zhangzagu 10 had a greater tolerance to TBM than the conventional variety Jingu 21. PMID:26565992

  1. Grain Yield and Quality of Foxtail Millet (Setaria italica L.) in Response to Tribenuron-Methyl.

    PubMed

    Ning, Na; Yuan, Xiangyang; Dong, Shuqi; Wen, Yinyuan; Gao, Zhenpan; Guo, Meijun; Guo, Pingyi

    2015-01-01

    Foxtail millet (Setaria italica L.) is cultivated around the world for human and animal consumption. There is no suitable herbicide available for weed control in foxtail millet fields during the post-emergence stage. In this study, we investigated the effect and safety of the post-emergence herbicide tribenuron-methyl (TBM) on foxtail millet in terms of grain yield and quality using a split-plot field design. Field experiments were conducted using two varieties in 2013 and 2014, i.e., high-yielding hybrid Zhangzagu 10 and high-quality conventional Jingu 21. TBM treatments at 11.25 to 90 g ai ha(-1) reduced root and shoot biomass and grain yield to varying degrees. In each of the two years, grain yield declined by 50.2% in Zhangzagu 10 with a herbicide dosage of 45 g ai ha(-1) and by 45.2% in Jingu 21 with a herbicide dosage of 22.5 g ai ha(-1) (recommended dosage). Yield reduction was due to lower grains per panicle, 1000-grain weight, panicle length, and panicle diameter. Grain yield was positively correlated with grains per panicle and 1000-grain weight, but not with panicles ha(-1). With respect to grain protein content at 22.5 g ai ha(-1,) Zhangzagu 10 was similar to the control, whereas Jingu 21 was markedly lower. An increase in TBM dosage led to a decrease in grain Mn, Cu, Fe, and Zn concentrations. In conclusion, the recommended dosage of TBM was relatively safe for Zhangzagu 10, but not for Jingu 21. Additionally, the hybrid variety Zhangzagu 10 had a greater tolerance to TBM than the conventional variety Jingu 21. PMID:26565992

  2. Assessment of Napier millet (Pennisetum purpureumx P. glaucum) and sorghum (Sorghum bicolor) trap crops for the management of Chilo partellus on maize.

    PubMed

    Hari, N S; Jindal, J

    2009-04-01

    Two Napier millet (Pennisetum purpureumxP. glaucum) hybrids, namely PBN 83 and PBN 233 and one sorghum (Sorghum bicolor) variety, SL 44, were assessed for their potential role as a trap crop in the management of the stem borer, Chilo partellus (Swinhoe) (Lepidoptera: Crambidae) on maize. Oviposition preference and larval survival and development were determined for different test plants under laboratory and screen house conditions. Further, field dispersal of C. partellus larvae was assessed between Napier millet and maize crops. Results from no-choice and dual-choice tests indicated that Napier millet hybrids were preferred for oviposition over maize by C. partellus moths. Sorghum was, however, not preferred over maize in this respect. Napier millet hybrids were poor larval hosts, and a rapid decline in larval numbers was noticed within the first five days after hatching and virtually no larvae survived to pupation. Leaf area eaten by the borer larvae was significantly less on these hybrids than on maize or sorghum. Plant damage was more severe in maize and sorghum than Napier millet hybrids. No appreciable larval shift was noticed from Napier millet hybrids to the adjoining maize crop. The evaluated Napier millet hybrids, therefore, had potential for use as trap crop in C. partellus management. Sorghum, however, did not hold promise in this respect.

  3. Effect of the treatment by slightly acidic electrolyzed water on the accumulation of γ-aminobutyric acid in germinated brown millet.

    PubMed

    Li, Xingfeng; Hao, Jianxiong; Liu, Xianggui; Liu, Haijie; Ning, Yawei; Cheng, Ruhong; Tan, Bin; Jia, Yingmin

    2015-11-01

    The accumulation of γ-aminobutyric acid and the microbial decontamination are concerned increasingly in the production of sprouts. In this work, the effect of the treatment by slightly acidic electrolyzed water on the accumulation of γ-aminobutyric acid in the germinated brown millet was evaluated by high performance liquid chromatography during germination. The results showed that slightly acidic electrolyzed water with appropriate available chlorine (15 or 30 mg/L) could promote the accumulation of γ-aminobutyric acid by up to 21% (P < 0.05). However, the treatment with slightly acidic electrolyzed water could not enhance the sprouts growth of the germinated brown millet. The catalase and peroxidase activities of the germinated brown millet during germination were in agreement with the sprouts growth. Our results suggested that the accumulation of γ-aminobutyric acid was independent of the length of sprouts in germinated grains. Moreover, the treatment with slightly acidic electrolyzed water significantly reduced the microbial counts in the germinated millet (P < 0.05) and the treatment with high available chlorine concentration (15 and 30 mg/L) showed stronger anti-infection potential in the germinated brown millet than that of lower available chlorine concentration (5 mg/L). In conclusion, the treatment with slightly acidic electrolyzed water is an available approach to improve the accumulation of γ-aminobutyric acid and anti-infection potential in the germinated brown millet, and it can avoid too long millet sprouts.

  4. Biology, genetics, and management of ergot (Claviceps spp.) in rye, sorghum, and pearl millet.

    PubMed

    Miedaner, Thomas; Geiger, Hartwig H

    2015-02-25

    Ergot is a disease of cereals and grasses caused by fungi in the genus Claviceps. Of particular concern are Claviceps purpurea in temperate regions, C. africana in sorghum (worldwide), and C. fusiformis in pearl millet (Africa, Asia). The fungi infect young, usually unfertilized ovaries, replacing the seeds by dark mycelial masses known as sclerotia. The percentage of sclerotia in marketable grain is strictly regulated in many countries. In winter rye, ergot has been known in Europe since the early Middle Ages. The alkaloids produced by the fungus severely affect the health of humans and warm-blooded animals. In sorghum and pearl millet, ergot became a problem when growers adopted hybrid technology, which increased host susceptibility. Plant traits reducing ergot infection include immediate pollination of receptive stigmas, closed flowering (cleistogamy), and physiological resistance. Genetic, nonpollen-mediated variation in ergot susceptibility could be demonstrated in all three affected cereals. Fungicides have limited efficacy and application is weather dependent. Sorting out the sclerotia from the harvest by photocells is expensive and time consuming. In conclusion, molecular-based hybrid rye breeding could improve pollen fertility by introgressing effective restorer genes thus bringing down the ergot infection level to that of conventional population cultivars. A further reduction might be feasible in the future by selecting more resistant germplasm.

  5. Non-wheat pasta based on pearl millet flour containing barley and whey protein concentrate.

    PubMed

    Yadav, Deep N; Balasubramanian, S; Kaur, Jaspreet; Anand, Tanupriya; Singh, Ashish K

    2014-10-01

    Non-wheat pasta was prepared with pearl millet supplemented with 10-30 % barley flour, 5-15 % whey protein concentrate, 2.5-4 % carboxy methyl cellulose and 27-33 % water using response surface methodology (RSM) following central composite rotatable design (CCRD). Results showed that barley flour and whey protein concentrate (WPC) had significant (p ≤ 0.05) positive effect on lightness and negative effect on stickiness of pasta, thus improved the overall acceptability (OAA). Carboxymethyl cellulose (CMC) improved the textural attributes i.e. increased firmness and decreased stickiness significantly (P ≤ 0.05) and caused a significant (P ≤ 0.05) reduction in solids losses in gruel. Based upon the experiments, the optimized level of ingredients were barley flour 13.80 g 100 g(-1) pearl millet flour (PMF), WPC 12.27 g 100 g(-1) PMF, CMC 3.45 g 100 g(-1) PMF and water 27.6 mL 100 g(-1) ingredients premix with 88 % desirability. The developed pasta had protein 16.47 g, calcium 98.53 mg, iron 5.43 mg, phosphorus 315.5 mg and β-glucan 0.33 g 100 g(-1) pasta (db). PMID:25328200

  6. Biology, genetics, and management of ergot (Claviceps spp.) in rye, sorghum, and pearl millet.

    PubMed

    Miedaner, Thomas; Geiger, Hartwig H

    2015-03-01

    Ergot is a disease of cereals and grasses caused by fungi in the genus Claviceps. Of particular concern are Claviceps purpurea in temperate regions, C. africana in sorghum (worldwide), and C. fusiformis in pearl millet (Africa, Asia). The fungi infect young, usually unfertilized ovaries, replacing the seeds by dark mycelial masses known as sclerotia. The percentage of sclerotia in marketable grain is strictly regulated in many countries. In winter rye, ergot has been known in Europe since the early Middle Ages. The alkaloids produced by the fungus severely affect the health of humans and warm-blooded animals. In sorghum and pearl millet, ergot became a problem when growers adopted hybrid technology, which increased host susceptibility. Plant traits reducing ergot infection include immediate pollination of receptive stigmas, closed flowering (cleistogamy), and physiological resistance. Genetic, nonpollen-mediated variation in ergot susceptibility could be demonstrated in all three affected cereals. Fungicides have limited efficacy and application is weather dependent. Sorting out the sclerotia from the harvest by photocells is expensive and time consuming. In conclusion, molecular-based hybrid rye breeding could improve pollen fertility by introgressing effective restorer genes thus bringing down the ergot infection level to that of conventional population cultivars. A further reduction might be feasible in the future by selecting more resistant germplasm. PMID:25723323

  7. Dietary Interventions for Type 2 Diabetes: How Millet Comes to Help

    PubMed Central

    Kam, Jason; Puranik, Swati; Yadav, Rama; Manwaring, Hanna R.; Pierre, Sandra; Srivastava, Rakesh K.; Yadav, Rattan S.

    2016-01-01

    Diabetes has become a highly problematic and increasingly prevalent disease world-wide. It has contributed toward 1.5 million deaths in 2012. Management techniques for diabetes prevention in high-risk as well as in affected individuals, beside medication, are mainly through changes in lifestyle and dietary regulation. Particularly, diet can have a great influence on life quality for those that suffer from, as well as those at risk of, diabetes. As such, considerations on nutritional aspects are required to be made to include in dietary intervention. This review aims to give an overview on the general consensus of current dietary and nutritional recommendation for diabetics. In light of such recommendation, the use of plant breeding, conventional as well as more recently developed molecular marker-based breeding and biofortification, are discussed in designing crops with desired characteristics. While there are various recommendations available, dietary choices are restricted by availability due to geo-, political-, or economical- considerations. This particularly holds true for countries such as India, where 65 million people (up from 50 million in 2010) are currently diabetic and their numbers are rising at an alarming rate. Millets are one of the most abundant crops grown in India as well as in Africa, providing a staple food source for many poorest of the poor communities in these countries. The potentials of millets as a dietary component to combat the increasing prevalence of global diabetes are highlighted in this review. PMID:27729921

  8. Biology, Genetics, and Management of Ergot (Claviceps spp.) in Rye, Sorghum, and Pearl Millet

    PubMed Central

    Miedaner, Thomas; Geiger, Hartwig H.

    2015-01-01

    Ergot is a disease of cereals and grasses caused by fungi in the genus Claviceps. Of particular concern are Claviceps purpurea in temperate regions, C. africana in sorghum (worldwide), and C. fusiformis in pearl millet (Africa, Asia). The fungi infect young, usually unfertilized ovaries, replacing the seeds by dark mycelial masses known as sclerotia. The percentage of sclerotia in marketable grain is strictly regulated in many countries. In winter rye, ergot has been known in Europe since the early Middle Ages. The alkaloids produced by the fungus severely affect the health of humans and warm-blooded animals. In sorghum and pearl millet, ergot became a problem when growers adopted hybrid technology, which increased host susceptibility. Plant traits reducing ergot infection include immediate pollination of receptive stigmas, closed flowering (cleistogamy), and physiological resistance. Genetic, nonpollen-mediated variation in ergot susceptibility could be demonstrated in all three affected cereals. Fungicides have limited efficacy and application is weather dependent. Sorting out the sclerotia from the harvest by photocells is expensive and time consuming. In conclusion, molecular-based hybrid rye breeding could improve pollen fertility by introgressing effective restorer genes thus bringing down the ergot infection level to that of conventional population cultivars. A further reduction might be feasible in the future by selecting more resistant germplasm. PMID:25723323

  9. Environmental effects on photorespiration of C sub 3 -C sub 4 species. I. Influence of CO sub 2 and O sub 2 during growth on photorespiratory characteristics and leaf anatomy. [Flaveria pringlei; Flaveria flroidana; Flaveria trinervia; Panicum milloides; Panicum laxum

    SciTech Connect

    Byrd, G.T.; Brown, R.H. )

    1989-07-01

    The possibility of altering CO{sub 2} exchange of C{sub 3}-C{sub 4} species by growing them under various CO{sub 2} and O{sub 2} concentrations was examined. Growth under CO{sub 2} concentrations of 100, 350, and 750 micromoles per mole had no significant effect on CO{sub 2} exchange characteristics or leaf anatomy of Flaveria pringlei (C{sub 3}), Flaveria floridana (C{sub 3}-C{sub 4}), or Flaveria trinervia (C{sub 4}). Carboxylation efficiency and CO{sub 2} compensation concentrations in leaves of F. floridana developed under the different CO{sub 2} concentrations were intermediate to F. pringlei and F. trinervia. When grown for 12 days at an O{sub 2} concentration of 20 millimoles per mole, apparent photosynthesis was strongly inhibited in Panicum milioides (C{sub 3}-C{sub 4}) and to a lesser degree in Panicum laxum (C{sub 3}). In P. milioides, acute starch buildup was observed microscopically in both mesophyll and bundle sheath cells. Even after only 4 days exposure to 20 millimoles per mole O{sub 2}, the presence of starch was more pronounced in leaf cross-sections of P. milioides compared to those at 100 and 210 millimoles per mole. Even though this observation suggests that P. milioides has a different response to low O{sub 2} with respect to translocation of photosynthate or sink activity than C{sub 3} species, the concentration of total available carbohydrate increased in shoots of all species by 33% or more when grown at low O{sub 2}. This accumulation occurred even though relative growth rates of Festuca arundinacea (C{sub 3}) and P. milioides grown for 4 days at 210 millimoles per mole O{sub 2}, were inhibited 83 and 37%, respectively, when compared to plants grown at 20 millimoles per mole O{sub 2}.

  10. Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection.

    PubMed

    Jogaiah, Sudisha; Kurjogi, Mahantesh; Govind, Sharathchandra Ramasandra; Huntrike, Shekar Shetty; Basappa, Vedamurthy Ankala; Tran, Lam-Son Phan

    2016-01-01

    Native endophytic actinomycetes isolated from pearl millet roots were examined for their efficacy to protect pearl millet against downy mildew. Nineteen of 39 isolates were found to be proteolytic, of which 7 strains could directly suppress the sporangium formation of Sclerospora graminicola, the pearl millet downy mildew pathogen. Thus, mycelial suspensions containing either spores or cell-free extract of these 7 isolates were used for seed-coating and -soaking treatments to test for their induction of downy mildew resistance. Results indicated that seed-coating overall provided better protection to downy mildew than seed-soaking. In both treatments, the tested isolates demonstrated differential abilities in downy mildew disease protection, with Streptomyces griseus SJ_UOM-07-09 and Streptosporangium roseum SJ_UOM-18-09 showing the highest protection rates. Additionally, the levels of disease protection conferred by the actinomycetes were just slightly lower than that of the systemic fungicide Apron, suggesting their effectiveness. Further studies revealed that the more rapid root colonization by SJ_UOM-18-09 resulted in faster and higher induced resistance in comparison with SJ_UOM-07-09 under greenhouse conditions, indicating that SJ_UOM-18-09 was superior than SJ_UOM-07-09 in inducing resistance. Results from this study provide comprehensive information on biocontrol functions of SJ_UOM- 18-09 with great potential to control downy mildew disease in pearl millet. PMID:27499196

  11. Spatial and Temporal Variation in Selection of Genes Associated with Pearl Millet Varietal Quantitative Traits In situ

    PubMed Central

    Mariac, Cédric; Ousseini, Issaka S.; Alio, Abdel-Kader; Jugdé, Hélène; Pham, Jean-Louis; Bezançon, Gilles; Ronfort, Joelle; Descroix, Luc; Vigouroux, Yves

    2016-01-01

    Ongoing global climate changes imply new challenges for agriculture. Whether plants and crops can adapt to such rapid changes is still a widely debated question. We previously showed adaptation in the form of earlier flowering in pearl millet at the scale of a whole country over three decades. However, this analysis did not deal with variability of year to year selection. To understand and possibly manage plant and crop adaptation, we need more knowledge of how selection acts in situ. Is selection gradual, abrupt, and does it vary in space and over time? In the present study, we tracked the evolution of allele frequency in two genes associated with pearl millet phenotypic variation in situ. We sampled 17 populations of cultivated pearl millet over a period of 2 years. We tracked changes in allele frequencies in these populations by genotyping more than seven thousand individuals. We demonstrate that several allele frequencies changes are compatible with selection, by correcting allele frequency changes associated with genetic drift. We found marked variation in allele frequencies from year to year, suggesting a variable selection effect in space and over time. We estimated the strength of selection associated with variations in allele frequency. Our results suggest that the polymorphism maintained at the genes we studied is partially explained by the spatial and temporal variability of selection. In response to environmental changes, traditional pearl millet varieties could rapidly adapt thanks to this available functional variability. PMID:27507986

  12. Isolation and evaluation of proteolytic actinomycete isolates as novel inducers of pearl millet downy mildew disease protection

    PubMed Central

    Jogaiah, Sudisha; Kurjogi, Mahantesh; Govind, Sharathchandra Ramasandra; Huntrike, Shekar Shetty; Basappa, Vedamurthy Ankala; Tran, Lam-Son Phan

    2016-01-01

    Native endophytic actinomycetes isolated from pearl millet roots were examined for their efficacy to protect pearl millet against downy mildew. Nineteen of 39 isolates were found to be proteolytic, of which 7 strains could directly suppress the sporangium formation of Sclerospora graminicola, the pearl millet downy mildew pathogen. Thus, mycelial suspensions containing either spores or cell-free extract of these 7 isolates were used for seed-coating and -soaking treatments to test for their induction of downy mildew resistance. Results indicated that seed-coating overall provided better protection to downy mildew than seed-soaking. In both treatments, the tested isolates demonstrated differential abilities in downy mildew disease protection, with Streptomyces griseus SJ_UOM-07-09 and Streptosporangium roseum SJ_UOM-18-09 showing the highest protection rates. Additionally, the levels of disease protection conferred by the actinomycetes were just slightly lower than that of the systemic fungicide Apron, suggesting their effectiveness. Further studies revealed that the more rapid root colonization by SJ_UOM-18-09 resulted in faster and higher induced resistance in comparison with SJ_UOM-07-09 under greenhouse conditions, indicating that SJ_UOM-18-09 was superior than SJ_UOM-07-09 in inducing resistance. Results from this study provide comprehensive information on biocontrol functions of SJ_UOM- 18-09 with great potential to control downy mildew disease in pearl millet. PMID:27499196

  13. Evaluation of Millet and Rapeseed as Rotation or Green Manure Crops to Control Nematodes in Orchard Replant

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Four annual crops, including Canadian forage pearl millet (Pennisetum glaucum) hybrid 101, velvetbean (Mucuna spp. ), rapeseed (Brassica napus) cv. Dwarf Essex, and buckwheat (Fagopyrum spp.), were evaluated as rotation or green manure crops for suppression of dagger (Xiphinema americanum) and lesio...

  14. Inclusion of sorghum, millet and cottonseed meal in broiler diets: a meta-analysis of effects on performance.

    PubMed

    Batonon-Alavo, D I; Umar Faruk, M; Lescoat, P; Weber, G M; Bastianelli, D

    2015-07-01

    A meta-analysis was conducted (i) to evaluate broiler response to partial or total substitution of corn by sorghum and millet and (ii) to determine the effect of soybean meal replacement by cottonseed meal in broiler diet. The database included 190 treatments from 29 experiments published from 1990 to 2013. Bird responses to an experimental diet were calculated relative to the control (Experimental-Control), and were submitted to mixed-effect models. Results showed that diets containing millet led to similar performance as the corn-based ones for all parameters, whereas sorghum-based diets decreased growth performance. No major effect of the level of substitution was observed with millet or cottonseed meal. No effect of the level of substitution of sorghum on feed intake was found; however, growth performance decreased when the level of substitution of corn by sorghum increased. Cottonseed meal was substituted to soybean meal up to 40% and found to increase feed intake while reducing growth performance. Young birds were not more sensitive to these ingredients than older birds since there was no negative effect of these ingredients on performance in the starter phase. Results obtained for sorghum pointed out the necessity to find technological improvements that will increase the utilization of these feedstuffs in broiler diet. An additional work is scheduled to validate these statistical results in vivo and to evaluate the interactions induced with the simultaneous inclusions of sorghum, millet and cottonseed meal in broiler feeding.

  15. Effect of processing on the microstructure of finger millet by X-ray diffraction and scanning electron microscopy.

    PubMed

    Dharmaraj, Usha; Parameswara, P; Somashekar, R; Malleshi, Nagappa G

    2014-03-01

    Finger millet is one of the important minor cereals, and carbohydrates form its major chemical constituent. Recently, the millet is processed to prepare hydrothermally treated (HM), decorticated (DM), expanded (EM) and popped (PM) products. The present research aims to study the changes in the microstructure of carbohydrates using X-ray diffraction and scanning electron microscopy. Processing the millet brought in significant changes in the carbohydrates. The native millet exhibited A-type pattern of X-ray diffraction with major peaks at 2θ values of 15.3, 17.86 and 23.15°, whereas, all other products showed V-type pattern with single major peak at 2θ values ranging from 19.39 to 19.81°. The corresponding lattice spacing and the number of unit cells in a particular direction of reflection also reduced revealing that crystallinity of starch has been decreased depending upon the processing conditions. Scanning electron microscopic studies also revealed that the orderly pattern of starch granules changed into a coherent mass due to hydrothermal treatment, while high temperature short time treatment rendered a honey-comb like structure to the product. However, the total carbohydrates and non-starch polysaccharide contents almost remained the same in all the products except for DM and EM, but the individual carbohydrate components changed significantly depending on the type of processing.

  16. Intervarietal variations in various oxidative stress markers and antioxidant potential of finger millet (Eleusine coracana) subjected to drought stress.

    PubMed

    Bartwal, Arti; Pande, Anjali; Sharma, Priyadarshini; Arora, Sandeep

    2016-07-01

    Drought is a major form of abiotic stress leading to lower crop productivity. Experiment was carried out for selecting the most tolerant genotype among six different genotypes of finger millet under drought stress. Seeds of six finger millet genotypes were sown in pots and grown for 35 days. After this period, drought was induced by withholding watering for stressed plants while control plants were watered regularly for comparison. Among all six different varieties of finger millet screened (PR202, PES400, PRM6107, VL283, VL328 and VL149) under varying intensities of drought stress,PRM6107 and PR202 showed highest stress tolerance by limiting excessive accumulation of reactive oxygen species (ROS) through activation of ROS scavenging antioxidative enzymes. A 200% increase in ascorbate content was recorded in PRM6107 and PR202, while in other varieties limited increase in ascorbate content was observed. Maximum decrease in chlorophyll content was observed in VL328 (83%) while least drop was observed in VL149 (65%). Relative water content indicated that PR202 was able to retain maximum water content under stress, as it recorded least drop in relative water content (55%), contributing to its better survival under stress. In conclusion finger millet genotypes PRM6107 and PR202 possessed maximum drought tolerance potential and thus may be used for allele mining of drought tolerant genes, which can further be employed for the development of more drought stress tolerant staple crops using biotechnological approach.

  17. Intervarietal variations in various oxidative stress markers and antioxidant potential of finger millet (Eleusine coracana) subjected to drought stress.

    PubMed

    Bartwal, Arti; Pande, Anjali; Sharma, Priyadarshini; Arora, Sandeep

    2016-07-01

    Drought is a major form of abiotic stress leading to lower crop productivity. Experiment was carried out for selecting the most tolerant genotype among six different genotypes of finger millet under drought stress. Seeds of six finger millet genotypes were sown in pots and grown for 35 days. After this period, drought was induced by withholding watering for stressed plants while control plants were watered regularly for comparison. Among all six different varieties of finger millet screened (PR202, PES400, PRM6107, VL283, VL328 and VL149) under varying intensities of drought stress,PRM6107 and PR202 showed highest stress tolerance by limiting excessive accumulation of reactive oxygen species (ROS) through activation of ROS scavenging antioxidative enzymes. A 200% increase in ascorbate content was recorded in PRM6107 and PR202, while in other varieties limited increase in ascorbate content was observed. Maximum decrease in chlorophyll content was observed in VL328 (83%) while least drop was observed in VL149 (65%). Relative water content indicated that PR202 was able to retain maximum water content under stress, as it recorded least drop in relative water content (55%), contributing to its better survival under stress. In conclusion finger millet genotypes PRM6107 and PR202 possessed maximum drought tolerance potential and thus may be used for allele mining of drought tolerant genes, which can further be employed for the development of more drought stress tolerant staple crops using biotechnological approach. PMID:27498495

  18. Spatial and Temporal Variation in Selection of Genes Associated with Pearl Millet Varietal Quantitative Traits In situ.

    PubMed

    Mariac, Cédric; Ousseini, Issaka S; Alio, Abdel-Kader; Jugdé, Hélène; Pham, Jean-Louis; Bezançon, Gilles; Ronfort, Joelle; Descroix, Luc; Vigouroux, Yves

    2016-01-01

    Ongoing global climate changes imply new challenges for agriculture. Whether plants and crops can adapt to such rapid changes is still a widely debated question. We previously showed adaptation in the form of earlier flowering in pearl millet at the scale of a whole country over three decades. However, this analysis did not deal with variability of year to year selection. To understand and possibly manage plant and crop adaptation, we need more knowledge of how selection acts in situ. Is selection gradual, abrupt, and does it vary in space and over time? In the present study, we tracked the evolution of allele frequency in two genes associated with pearl millet phenotypic variation in situ. We sampled 17 populations of cultivated pearl millet over a period of 2 years. We tracked changes in allele frequencies in these populations by genotyping more than seven thousand individuals. We demonstrate that several allele frequencies changes are compatible with selection, by correcting allele frequency changes associated with genetic drift. We found marked variation in allele frequencies from year to year, suggesting a variable selection effect in space and over time. We estimated the strength of selection associated with variations in allele frequency. Our results suggest that the polymorphism maintained at the genes we studied is partially explained by the spatial and temporal variability of selection. In response to environmental changes, traditional pearl millet varieties could rapidly adapt thanks to this available functional variability. PMID:27507986

  19. Tracking 800-year-old Shipments: An Archaeological Investigation of the Mado Shipwreck Cargo, Taean, Korea

    NASA Astrophysics Data System (ADS)

    Kim, Minkoo; Moon, Whan Suk

    2011-12-01

    This paper examines cargo from an 800-year-old shipwreck and discusses its implications in relation to the exchange networks and maritime transportation of the Goryeo period (A.D. 918-1392) in Korea. In 2007, two local fishermen fortuitously discovered porcelain vessels from a Goryeo-period shipwreck off the mid-western coast of the Korean peninsula. Underwater excavation conducted by the National Research Institute of Maritime Cultural Heritage (NRIMCH) revealed that the ship was carrying a myriad of cargoes destined for Gaegyeong, the capital of the Goryeo dynasty. Excavation indicates that the main body of the cargo was porcelain vessels produced in the southern part of the peninsula. Archaeobotanical investigation of the wreck deposits revealed that the ship was carrying crops such as rice ( Oryza sativa L.), broomcorn millet ( Panicum miliaceum L.), foxtail millet ( Setaria italica (L.) P. Beauv.), and buckwheat ( Fagopyrum esculentum Moench) bound for the capital. Among the recovered objects were 73 wooden cargo tags with Chinese letters. These tags, equivalent to the modern day air bill, contained detailed information about the senders, recipients, and shipped goods. These findings indicate that during the Goryeo period maritime transportation played an important role in the interpersonal exchange of products over long distances.

  20. Association of shifting populations in the root zone microbiome of millet with enhanced crop productivity in the Sahel region (Africa).

    PubMed

    Debenport, Spencer J; Assigbetse, Komi; Bayala, Roger; Chapuis-Lardy, Lydie; Dick, Richard P; McSpadden Gardener, Brian B

    2015-04-01

    This study characterized specific changes in the millet root zone microbiome stimulated by long-term woody-shrub intercropping at different sites in Senegal. At the two study sites, intercropping with woody shrubs and shrub residue resulted in a significant increase in millet [Pennisetum glaucum (L.) R. Br.] yield (P < 0.05) and associated patterns of increased diversity in both bacterial and fungal communities in the root zone of the crop. Across four experiments, operational taxonomic units (OTUs) belonging to Chitinophaga were consistently significantly (P < 0.001) enriched in the intercropped samples, and "Candidatus Koribacter" was consistently significantly enriched in samples where millet was grown alone. Those OTUs belonging to Chitinophaga were enriched more than 30-fold in residue-amended samples and formed a distinct subgroup from all OTUs detected in the genus. Additionally, OTUs belonging to 8 fungal genera (Aspergillus, Coniella, Epicoccum, Fusarium, Gibberella, Lasiodiplodia, Penicillium, and Phoma) were significantly (P < 0.005) enriched in all experiments at all sites in intercropped samples. The OTUs of four genera (Epicoccum, Fusarium, Gibberella, and Haematonectria) were consistently enriched at sites where millet was grown alone. Those enriched OTUs in intercropped samples showed consistently large-magnitude differences, ranging from 30- to 1,000-fold increases in abundance. Consistently enriched OTUs in intercropped samples in the genera Aspergillus, Fusarium, and Penicillium also formed phylogenetically distinct subgroups. These results suggest that the intercropping system used here can influence the recruitment of potentially beneficial microorganisms to the root zone of millet and aid subsistence farmers in producing higher-yielding crops. PMID:25681183

  1. Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)

    PubMed Central

    Assigbetse, Komi; Bayala, Roger; Chapuis-Lardy, Lydie; Dick, Richard P.; McSpadden Gardener, Brian B.

    2015-01-01

    This study characterized specific changes in the millet root zone microbiome stimulated by long-term woody-shrub intercropping at different sites in Senegal. At the two study sites, intercropping with woody shrubs and shrub residue resulted in a significant increase in millet [Pennisetum glaucum (L.) R. Br.] yield (P < 0.05) and associated patterns of increased diversity in both bacterial and fungal communities in the root zone of the crop. Across four experiments, operational taxonomic units (OTUs) belonging to Chitinophaga were consistently significantly (P < 0.001) enriched in the intercropped samples, and “Candidatus Koribacter” was consistently significantly enriched in samples where millet was grown alone. Those OTUs belonging to Chitinophaga were enriched more than 30-fold in residue-amended samples and formed a distinct subgroup from all OTUs detected in the genus. Additionally, OTUs belonging to 8 fungal genera (Aspergillus, Coniella, Epicoccum, Fusarium, Gibberella, Lasiodiplodia, Penicillium, and Phoma) were significantly (P < 0.005) enriched in all experiments at all sites in intercropped samples. The OTUs of four genera (Epicoccum, Fusarium, Gibberella, and Haematonectria) were consistently enriched at sites where millet was grown alone. Those enriched OTUs in intercropped samples showed consistently large-magnitude differences, ranging from 30- to 1,000-fold increases in abundance. Consistently enriched OTUs in intercropped samples in the genera Aspergillus, Fusarium, and Penicillium also formed phylogenetically distinct subgroups. These results suggest that the intercropping system used here can influence the recruitment of potentially beneficial microorganisms to the root zone of millet and aid subsistence farmers in producing higher-yielding crops. PMID:25681183

  2. Photosynthesis, Morphology, Leaf Anatomy, and Cytogenetics of Hybrids between C(3) and C(3)/C(4)Panicum Species.

    PubMed

    Brown, R H; Bouton, J H; Evans, P T; Malter, H E; Rigsby, L L

    1985-03-01

    The Laxa group of the Panicum genus contains species which have CO(2) exchange and anatomical characteristics intermediate to C(3) and C(4) photosynthetic types (C(3)/C(4)), and also species characterized as C(3). Hybrids were made between two of the C(3)/C(4) species and two C(3) species. Carbon dioxide exchange and morphological, leaf anatomical, and cytogenetic characteristics of F(1) hybrids between Panicum milioides Nees. ex Trin (C(3)/C(4)) and P. laxum Mez. (C(3)), P. spathellosum Doell (C(3)/C(4)) and P. boliviense Hack. (C(3)), and P. spathellosum and P. laxum were studied. There were no consistent differences in apparent photosynthesis, although two of the three hybrids had higher net CO(2) uptake than the C(3) parent. Values of inhibition of apparent photosynthesis by 21% O(2), CO(2) loss in the light, and CO(2) compensation concentration for the hybrids were between those of the parents. All three hybrids showed leaf anatomical traits, especially organelle quantities in the bundle sheath cells, between those of their respective parents. Linear regression of CO(2) compensation concentration on the percentage of mitochondria and chloroplasts in vascular bundle sheaths of the parents and hybrids gave correlation coefficients of -0.94. This suggests that the reduction in CO(2) loss in the C(3)/C(4) species, and to a lesser degree in the F(1) hybrids, was due to development of organelles and perhaps a higher proportion of leaf photorespiration in bundle sheaths. The overall morphology of the hybrids was so different from the parents that they could be described as new taxonomic forms. The chromosomes in the hybrids were mainly unpaired or paired as bivalents indicating possible homology between some parental genomes.

  3. Rheological quality of pearl millet porridge as affected by grits size.

    PubMed

    Yadav, Deep N; Chhikara, Navnidhi; Anand, Tanupriya; Sharma, Monika; Singh, Ashish K

    2014-09-01

    Study was conducted to optimize pearl millet grits size for the preparation of acceptable porridge with skimmed milk powder (SMP). Pearl millet porridge was prepared with different grits size (1.410, 0.841, 0.595, and 0.420 mm). A positive (r = 0.904) correlation was observed between water absorption index and grits size. Porridge showed shear thinning behavior as, initially shear stress increased with increase in shear rate and later on decreased. Porridge prepared with larger grits (1.410 mm) exhibited higher firmness (38.4 ± 1.27 N) and viscosity (446 ± 3.9 cP), whereas smaller grits (0.420 mm) resulted in less viscous (118.8 ± 1.74 cP) and firm (20.4 ± 1.85 N) porridge. The medium grits (0.841 mm) produced porridge with acceptable firmness (30.7 ± 1.56 N) and viscosity (298.1 ± 8.81 cP) with moderate (6.0 ± 0.10) acceptability. To improve sensory quality of porridge (grits size 0.841 mm); skimmed milk powder at different levels (0, 5, 10 and 15 %) was added and its effect on various quality parameters was studied. SMP addition significantly (P ≤ 0.05) modified the gelatinization and gelling behavior of grits and decreased (P ≤ 0.05) all the pasting characteristics except pasting temperature, which increased from 77.1 ± 1.85 to 85.9 ± 3.46 °C. The peak (499 ± 6.6 cP) and final viscosity (450 ± 11.9 cP) of porridge (0.841 mm) prepared with 15 % SMP are quite similar. Hence, it maintains viscosity on cooling, similar to maximum viscosity attained during cooking. Keeping in view the rheological, firmness and sensory quality, 0.841 mm grits of pearl millet with 15 % SMP was found optimum for preparation of acceptable porridge.

  4. Evolutionary dynamics of cycle length in pearl millet: the role of farmer's practices and gene flow.

    PubMed

    Lakis, Ghayas; Ousmane, Athman Maï; Sanoussi, Douka; Habibou, Abdoulaye; Badamassi, Mahamane; Lamy, Françoise; Jika, Naino; Sidikou, Ramatou; Adam, Toudou; Sarr, Aboubakry; Luxereau, Anne; Robert, Thierry

    2011-12-01

    In the Sahel of Africa, farmers often modify their cultivation practices to adapt to environmental changes. How these changes shape the agro-biodiversity is a question of primary interest for the conservation of plant genetic resources. We addressed this question in a case study on pearl millet in south western Niger where farmers used to cultivate landraces with different cycle length in order to cope with rain uncertainty. Early and late landraces were previously grown on distant fields. Nowadays, mostly because of human population pressure and soil impoverishment, it happens that the two types of landraces are grown on adjacent fields, opening the question whether gene flow between them may occur. This question was tackled through a comparative study among contrasting situations pertaining to the spatial distribution of early and late landraces. Observations of flowering periods showed that pollen flow between the two landraces is possible and has a preferential direction from early to late populations. PMID:22327603

  5. Buckwheat and Millet Affect Thermal, Rheological, and Gelling Properties of Wheat Flour.

    PubMed

    Wu, Kao; Gan, Renyou; Dai, Shuhong; Cai, Yi-Zhong; Corke, Harold; Zhu, Fan

    2016-03-01

    Buckwheat (BF) and millet (MF) are recommended as healthy foods due to their unique chemical composition and health benefits. This study investigated the thermal and rheological properties of BF-WF (wheat flour) and MF-WF flour blends at various ratios (0:100 to 100:0). Increasing BF or MF concentration led to higher cold paste viscosity and setback viscosity of pasting properties gel adhesiveness, storage modulus (G') and loss modulus (G″) of dynamic oscillatory rheology, and yield stress (σ0 ) of flow curve of WF. BF and MF addition decreased peak viscosity and breakdown of pasting, gel hardness, swelling volume, and consistency coefficient (K) of flow curve of WF. Thermal properties of the blends appeared additive of that of individual flour. Nonadditive effects were observed for some property changes in the mixtures, and indicated interactions between flour components. This may provide a physicochemical basis for using BF and MF in formulating novel healthy products.

  6. Biscuit-making potential of millet/pigeon pea flour blends.

    PubMed

    Eneche, E H

    1999-01-01

    Biscuits were produced from millet flour (MF) and pigeon pea flour (PPF) blends. The various ratios of MF to PPF used were 100:0, 75:25, 65:35, and 50:50. The biscuits were analyzed for their nutritional composition. They all contained high proportions of protein (7.5-15.2%), fat (17.1-18.1%) and digestible carbohydrate (60.2-66.5%). The moisture content was in the range 5.0 to 6.6%, ash 1.5-2.3% and crude fiber 0-0.1%. Sensory evaluation results indicated that all the biscuits had high sensory ratings for all the selected attributes evaluated. The recipe with the 65% MF/35% PPF blend resulted in the highest scores for flavor, texture and general acceptability. There was no significant difference (p > 0.05) between all the biscuits and the familiar Nasco short cake biscuit (reference) in flavor, color, texture and general acceptability.

  7. Effect of retrogradation time on preparation and characterization of proso millet starch nanoparticles.

    PubMed

    Sun, Qingjie; Gong, Min; Li, Ying; Xiong, Liu

    2014-10-13

    Starch nanoparticles were prepared from proso millet starch using a green and facile method combined with enzymolysis and recrystallization. Scanning electron microscopy (SEM), X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), differential scanning calorimeter (DSC) and thermal gravimetric analysis (TGA) were used to characterize the morphology and crystal structure of the starch nanoparticles prepared with different retrogradation time (0.5, 4, 12, and 24h). The results showed that the sizes of the starch nanoparticles were between 20 nm and 100 nm. The crystal pattern changed from A-type (native starch) to B-type (nanoparticles), and the relative crystallinity of the nanoparticles increased obviously, as compared with the native starch. The nanoparticles prepared with the 12h retrogradation time had the highest degree of crystallinity (47.04%). Compared to conventional acid hydrolysis to make starch nanoparticles, the present approach has the advantage of being quite rapid and presenting a higher yield (about 55%).

  8. Spectroscopic characterization and structural modeling of prolamin from maize and pearl millet.

    PubMed

    Bugs, Milton Roque; Forato, Lucimara Aparecida; Bortoleto-Bugs, Raquel Kely; Fischer, Hannes; Mascarenhas, Yvonne Primerano; Ward, Richard John; Colnago, Luiz Alberto

    2004-07-01

    Biophysical methods and structural modeling techniques have been used to characterize the prolamins from maize ( Zea mays) and pearl millet ( Pennisetum americanum). The alcohol-soluble prolamin from maize, called zein, was extracted using a simple protocol and purified by gel filtration in a 70% ethanol solution. Two protein fractions were purified from seed extracts of pearl millet with molecular weights of 25.5 and 7 kDa, as estimated by SDS-PAGE. The high molecular weight protein corresponds to pennisetin, which has a high alpha-helical content both in solution and the solid state, as demonstrated by circular dichroism and Fourier transform infrared spectra. Fluorescence spectroscopy of both fractions indicated changes in the tryptophan microenvironments with increasing water content of the buffer. Low-resolution envelopes of both fractions were retrieved by ab initio procedures from small-angle X-ray scattering data, which yielded maximum molecular dimensions of about 14 nm and 1 nm for pennisetin and the low molecular weight protein, respectively, and similar values were observed by dynamic light scattering experiments. Furthermore, (1)H nuclear magnetic resonance spectra of zein and pennisetin do not show any signal below 0.9 ppm, which is compatible with more extended solution structures. The molecular models for zein and pennisetin in solution suggest that both proteins have an elongated molecular structure which is approximately a prolate ellipsoid composed of ribbons of folded alpha-helical segments with a length of about 14 nm, resulting in a structure that permits efficient packing within the seed endosperm.

  9. Development and shelf-life evaluation of pearl millet based upma dry mix.

    PubMed

    Balasubramanian, S; Yadav, Deep N; Kaur, Jaspreet; Anand, Tanupriya

    2014-06-01

    Upma, a popular breakfast of southern India, traditionally made from wheat, was prepared using pearl millet semolina (PMS). Prior to preparation of semolina, pearl millet grains were hydro-thermally treated to reduce anti-nutritional factors and inactivate lipase activity. Hydrothermal treatments (soaking up to moisture 30 ± 2%, steaming 1.05 kg cm(-2), 20 min) reduced the anti-nutritional factors significantly (p ≤ 0.05). No lipase activity was detected after steaming. Central composite rotatable design (CCRD) with three independent variables i.e. vanaspati (vegetable fat), citric acid and water for rehydration were used to design the experiments. Sensory responses and rehydration ratio were used to study the individual and interactive effects of variables. Sensory score for taste varied from 6.5 to 8.1, mouth feel 6.7-8.0, overall acceptability 6.7-8.1 and rehydration ratio from 2.4 to 3.3. Based upon the experiments, the optimized level of ingredients was: vanaspati 46.5 g 100 g(-1) PMS, citric acid 0.17 g 100 g(-1) PMS and water for rehydration 244.6 ml 100 g(-1) dry mix with 98.5% desirability. The prepared upma mix was monitored for peroxide value, free fatty acids and thiobarbituric acid value as well as sensory quality during storage and was found stable for 6 months at ambient conditions (20-35 °C) in poly ethylene pouches (75 μ). PMID:24876643

  10. Sources of water used by trees and millet in Sahelian windbreak systems

    NASA Astrophysics Data System (ADS)

    Smith, D. Mark; Jarvis, Paul G.; Odongo, Julius C. W.

    1997-11-01

    The extent to which water use by trees and crops is complementary in agroforestry systems may be affected by the proximity of groundwater to the soil surface. This may have important implications for the planning and management of agroforestry in semi-arid regions such as the Sahel of West Africa. A method of distinguishing uptake of water by plants from different sources was used, therefore, at locations with contrasting water table levels, to determine whether Azadirachta indica A. Juss (neem) trees in windbreaks utilised water from the same depths as adjacent crops of pearl millet ( Pennisetum glaucum (L.) R. Br.). Comparisons of ratios of the stable isotopes of oxygen ( 18O/ 16O) in plant sap, groundwater and water in the unsaturated zone of the soil profile were made in the Majjia Valley, in south-central Niger, where groundwater was found at depths of 6-8 m, and at Sadoré in south-western Niger, where the water table was at a depth of 35 m. In the Majjia Valley, the trees obtained large portions of their water from surface layers of the soil only after rain, when water there was abundant. During dry periods, roots of the trees extracted groundwater or deep reserves of soil water, while the millet crop extracted water from closer to the top of the soil profile. In contrast, at Sadoré, both the trees and crop fulfilled their water requirements from the top 2-3 m of the soil throughout the year. Thus, utilisation of water by windbreak trees and crops is more complementary where groundwater is accessible to tree roots. Competition for water is likely reduced at such locations as a consequence, but may affect the productivity of windbreak systems where groundwater is inaccessible. To maximise the benefits of establishing windbreaks, therefore, it is important that planners recommend strategies for reducing competition for water between trees and crops at sites where groundwater cannot be reached by tree roots.

  11. Preferential recruitment of the maternal centromere-specific histone H3 (CENH3) in oat (Avena sativa L.) × pearl millet (Pennisetum glaucum L.) hybrid embryos.

    PubMed

    Ishii, Takayoshi; Sunamura, Naohiro; Matsumoto, Ayaka; Eltayeb, Amin Elsadig; Tsujimoto, Hisashi

    2015-12-01

    Chromosome elimination occurs frequently in interspecific hybrids between distantly related species in Poaceae. However, chromosomes from both parents behave stably in a hybrid of female oat (Avena sativa L.) pollinated by pearl millet (Pennisetum glaucum L.). To analyze the chromosome behavior in this hybrid, we cloned the centromere-specific histone H3 (CENH3) genes of oat and pearl millet and produced a pearl millet-specific anti-CENH3 antibody. Application of this antibody together with a grass species common anti-CENH3 antibody revealed the dynamic CENH3 composition of the hybrid cells before and after fertilization. Despite co-expression of CENH3 genes encoded by oat and pearl millet, only an oat-type CENH3 was incorporated into the centromeres of both species in the hybrid embryo. Oat CENH3 enables a functional centromere in pearl millet chromosomes in an oat genetic background. Comparison of CENH3 genes among Poaceae species that show chromosome elimination in interspecific hybrids revealed that the loop 1 regions of oat and pearl millet CENH3 exhibit exceptionally high similarity.

  12. Invertebrate fauna associated with Torpedograss, Panicum repens (Cyperales: Poaceae), in Lake Okeechobee, Florida, and prospects for biological control

    SciTech Connect

    Cuda, J.P.; Dunford, J.C.; Leavengood, J.M. Jr.

    2007-03-15

    Torpedograss, Panicum repens L., is an adventive, rhizomatous grass species that has become an invasive weed of terrestrial, wetland, and aquatic environments in tropical and subtropical regions worldwide. Until recently, strategies for controlling torpedograss in the USA have focused almost exclusively on mechanical and chemical methods, either alone or in combination, with varied results. A survey of the arthropods and nematodes currently associated with the plant in Lake Okeechobee, Florida, was conducted as part of a feasibility study to determine whether torpedograss is an appropriate target for a classical biological control program. Overall, approximately 4,000 arthropods and 400 nematode specimens were collected. Sweep, clipped vegetation, and soil core samples were dominated by representatives of the arthropod orders Hemiptera, Hymenoptera, Diptera, and Acari. Lesion nematodes of the genus Pratylenchus were commonly associated with the roots of torpedograss. None of the organisms collected were torpedograss specialists. Although classical biological control of torpedograss is feasible based on the extent of the infestation, economic losses, resistance to conventional controls, and the report of a potentially host specific natural enemy in India, the botanical position of this grass weed will require a formal risk assessment before proceeding with a classical biological control program. (author) [Spanish] La conota, Panicum repens L., es una especie foranea de pasto que produce rizomas que ha convertido en ser una maleza invasora de ambientes terrestres, pantanosos y acuaticos en regiones tropicales y subtropicales en todo el mundo. Hasta hace un tiempo reciente, las estrategias para controlar conota en los EEUU eran enfocadas casi exclusivamente en los metodos mecanicos y quimicos, solos o en combinacion, con resultados variables. Un muestreo de los artropodos y nematodos asociados corrientemente con esta planta en el Lago de Okeechobee, Florida, fue

  13. Species and population variation to salinity stress in Panicum hemitomon, Spartina patens, and Spartina alterniflora: Morphological and physiological constraints

    USGS Publications Warehouse

    Hester, M.W.; Mendelssohn, I.A.; McKee, K.L.

    2001-01-01

    Panicum hemitomon, Spartina patens, and Spartina alterniflora are wide-spread dominant grasses of fresh, brackish, and salt marsh plant communities, respectively. Our previous research identified significant intraspecific variation in salt tolerance and morphology among populations within each species. In this study our objectives were to determine shorter-term physiological/biochemical responses to salinity stress and identify potential indicators of salt tolerance, with the ultimate goal of discerning similarities and differences in the mechanisms of salinity stress resistance. We subjected a subset of six populations within each species, ranging from high to low salt tolerance, to sublethal salinity levels (4, 20, and 30 ppt, respectively, for species) and monitored physiological and growth responses after 1 week (early harvest) and 5 weeks (late harvest). In all three species sublethal salinity levels generally resulted in significantly reduced net CO2 assimilation, leaf expansion, midday leaf xylem pressure, water use efficiency, and live and total biomass; and significantly increased leaf Na+/K+ ratio, leaf proline, leaf glycine betaine, leaf sucrose, root-to-shoot ratio, and dead:total aboveground biomass ratio. All three species displayed significant population (intraspecific) variation in net CO2 assimilation, leaf expansion, water use efficiency, midday leaf xylem pressure, leaf proline, leaf glycine betaine (except Panicum, where it could not be accurately determined), leaf Na+/K+ ratio, leaf sucrose, total plant biomass, dead:total aboveground biomass ratio, and root-to-shoot ratio. General indicators of salt tolerance (regardless of species) included high net CO2 assimilation rates and water use efficiencies, and low ratios of root-to-shoot and dead:total aboveground biomass. Factor analysis and a-priori linear contrasts revealed some unique differences between species in terms of the relative importance of morphology and physiology in explaining

  14. Selection of suitable reference genes for assessing gene expression in pearl millet under different abiotic stresses and their combinations

    PubMed Central

    Shivhare, Radha; Lata, Charu

    2016-01-01

    Pearl millet [Pennisetum glaucum (L.) R. Br.] a widely used grain and forage crop, is grown in areas frequented with one or more abiotic stresses, has superior drought and heat tolerance and considered a model crop for stress tolerance studies. Selection of suitable reference genes for quantification of target stress-responsive gene expression through quantitative real-time (qRT)-PCR is important for elucidating the molecular mechanisms of improved stress tolerance. For precise normalization of gene expression data in pearl millet, ten candidate reference genes were examined in various developmental tissues as well as under different individual abiotic stresses and their combinations at 1 h (early) and 24 h (late) of stress using geNorm, NormFinder and RefFinder algorithms. Our results revealed EF-1α and UBC-E2 as the best reference genes across all samples, the specificity of which was confirmed by assessing the relative expression of a PgAP2 like-ERF gene that suggested use of these two reference genes is sufficient for accurate transcript normalization under different stress conditions. To our knowledge this is the first report on validation of reference genes under different individual and multiple abiotic stresses in pearl millet. The study can further facilitate fastidious discovery of stress-tolerance genes in this important stress-tolerant crop. PMID:26972345

  15. Leaf gas exchange of Andropogon gerardii Vitman, Panicum virgatum L., and Sorghastrum nutans (L.) Nash in a tallgrass prairie

    NASA Technical Reports Server (NTRS)

    Polley, H. W.; Norman, J. M.; Arkebauer, T. J.; Walter-Shea, E. A.; Greegor, D. H., Jr.; Bramer, B.

    1992-01-01

    Net CO2 assimilation as a function of internal CO2 and stomatal conductance to water vapor were measured on blades of the C4 grasses Andropogon gerardii Vitman, Panicum virgatrum L., and Sorghastrum nutans (L.) Nash in northeast Kansas over two growing seasons to determine the comparative physiological responses of these dominant grasses of the tallgrass prairie to environmental variables. The response of dark respiration to temperature and of net assimilation to CO2 concentration and absorbed quantum flux differed little among species. A. gerardii had lower potential photosynthetic rates at internal CO2 concentrations below saturation than P. virgatum and S. nutans, but net assimilation under ambient conditions was similar in the three species. Net assimilation and both the initial slope of assimilation versus internal CO2 curves and the maximum potential assimilation rate decreased as leaf water potential declined in blades of A. gerardii and S. nutans. Changes in assimilation capacity were paralleled by changes in stomatal conductance that were similar in all three species. The strong correlations among processes regulating leaf CO2 assimilation and transpiration in A. gerardii, P. virgatum, and S. nutans suggest that the processes are tightly and similarly coupled in these grasses over a wide range of environmental conditions encountered in the tallgrass prairie.

  16. Allelopathic Potential of Switchgrass ( Panicum virgatum L.) on Perennial Ryegrass ( Lolium perenne L.) and Alfalfa ( Medicago sativa L.)

    NASA Astrophysics Data System (ADS)

    Shui, Junfeng; An, Yu; Ma, Yongqing; Ichizen, Nobumasa

    2010-10-01

    This study investigated allelopathy and its chemical basis in nine switchgrass ( Panicum virgatum L.) accessions. Perennial ryegrass ( Lolium perenne L.) and alfalfa ( Medicago sativa L.) were used as test species. Undiluted aqueous extracts (5 g plant tissue in 50 ml water) from the shoots and roots of most of the switchgrass accessions inhibited the germination and growth of the test species. However, the allelopathic effect of switchgrass declined when extracts were diluted 5- or 50-fold. Seedling growth was more sensitive than seed germination as an indicator of allelopathic effect. Allelopathic effect was related to switchgrass ecotype but not related to ploidy level. Upland accessions displayed stronger allelopathic potential than lowland accessions. The aqueous extract from one switchgrass accession was separated into phenols, organic acids, neutral chemicals, and alkaloids, and then these fractions were bioassayed to test for allelopathic potential. Alkaloids had the strongest allelopathic effect among the four chemical fractions. In summary, the results indicated that switchgrass has allelopathic potential; however, there is not enough evidence to conclude that allelopathic advantage is the main factor that has contributed to the successful establishment of switchgrass on China’s Loess Plateau.

  17. Synergistic and Antagonistic Effects of Salinity and pH on Germination in Switchgrass (Panicum virgatum L.)

    PubMed Central

    Liu, Yuan; Wang, Quanzhen; Zhang, Yunwei; Cui, Jian; Chen, Guo; Xie, Bao; Wu, Chunhui; Liu, Haitao

    2014-01-01

    The effects of salt-alkaline mixed stress on switchgrass were investigated by evaluating seed germination and the proline, malondialdehyde (MDA) and soluble sugar contents in three switchgrass (Panicum virgatum L.) cultivars in order to identify which can be successfully produced on marginal lands affected by salt-alkaline mixed stress. The experimental conditions consisted of four levels of salinity (10, 60, 110 and 160 mM) and four pH levels (7.1, 8.3, 9.5 and 10.7). The effects of salt-alkaline mixed stress with equivalent coupling of the salinity and pH level on the switchgrass were explored via model analyses. Switchgrass was capable of germinating and surviving well in all treatments under low-alkaline pH (pH≤8.3), regardless of the salinity. However, seed germination and seedling growth were sharply reduced at higher pH values in conjunction with salinity. The salinity and pH had synergetic effects on the germination percentage, germination index, plumular length and the soluble sugar and proline contents in switchgrass. However, these two factors exhibited antagonistic effects on the radicular length of switchgrass. The combined effects of salinity and pH and the interactions between them should be considered when evaluating the strength of salt-alkaline mixed stress. PMID:24454834

  18. Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.).

    PubMed

    Lata, Charu; Mishra, Awdhesh Kumar; Muthamilarasan, Mehanathan; Bonthala, Venkata Suresh; Khan, Yusuf; Prasad, Manoj

    2014-01-01

    The APETALA2/ethylene-responsive element binding factor (AP2/ERF) family is one of the largest transcription factor (TF) families in plants that includes four major sub-families, namely AP2, DREB (dehydration responsive element binding), ERF (ethylene responsive factors) and RAV (Related to ABI3/VP). AP2/ERFs are known to play significant roles in various plant processes including growth and development and biotic and abiotic stress responses. Considering this, a comprehensive genome-wide study was conducted in foxtail millet (Setaria italica L.). A total of 171 AP2/ERF genes were identified by systematic sequence analysis and were physically mapped onto nine chromosomes. Phylogenetic analysis grouped AP2/ERF genes into six classes (I to VI). Duplication analysis revealed that 12 (∼7%) SiAP2/ERF genes were tandem repeated and 22 (∼13%) were segmentally duplicated. Comparative physical mapping between foxtail millet AP2/ERF genes and its orthologs of sorghum (18 genes), maize (14 genes), rice (9 genes) and Brachypodium (6 genes) showed the evolutionary insights of AP2/ERF gene family and also the decrease in orthology with increase in phylogenetic distance. The evolutionary significance in terms of gene-duplication and divergence was analyzed by estimating synonymous and non-synonymous substitution rates. Expression profiling of candidate AP2/ERF genes against drought, salt and phytohormones revealed insights into their precise and/or overlapping expression patterns which could be responsible for their functional divergence in foxtail millet. The study showed that the genes SiAP2/ERF-069, SiAP2/ERF-103 and SiAP2/ERF-120 may be considered as potential candidate genes for further functional validation as well for utilization in crop improvement programs for stress resistance since these genes were up-regulated under drought and salinity stresses in ABA dependent manner. Altogether the present study provides new insights into evolution, divergence and systematic

  19. Fusarium species of the Gibberella fujikuroi complex and fumonisin contamination of pearl millet and corn in Georgia, USA.

    PubMed

    Jurjevic, Z; Wilson, D M; Wilson, J P; Geiser, D M; Juba, J H; Mubatanhema, W; Widstrom, N W; Rains, G C

    2005-04-01

    This study was designed to identify and compare the Fusarium species of the Gibberella fujikuroi complex on pearl millet (Pennisetum glaucum (L.) R. Br) and corn (Zea mays L.) crops grown in southern Georgia, and to determine their influence on potential fumonisin production. Pearl millet and corn samples were collected in Georgia in 1996, 1997 and 1998. Three percent of the pearl millet seeds had fungi similar to the Fusarium species of the G. fujikuroi species complex. One hundred and nineteen representative isolates visually similar to the G. fujikuroi species complex from pearl millet were paired with mating population A (Fusarium verticillioides (Sacc.) Nirenberg), mating population D (F. proliferatum (Matsushima) Nirenberg) and mating population F (F. thapsinum (Klittich, Leslie, Nelson and Marasas) tester strains. Successful crosses were obtained with 50.4%, 10.1% and 0.0% of these isolates with the A, D and F tester strains, while 39.5 of the isolates did not form perithecia with any tester strains. Two of the typical infertile isolates were characterized by DNA sequence comparisons and were identified as Fusarium pseudonygamai (Nirenberg and O'Donnell), which is the first known isolation of this species in the United States. Based on the pattern of cross-compatibility, conidiogenesis, colony characteristics and media pigmentation, a majority of the infertile isolates belong to this species. Fumonisins FB(1) and FB(2) were not detected in any of the 81 pearl millet samples analyzed. The species of the G. fujikuroi species complex were dominant in corn and were isolated from 84%, 74% and 65% of the seed in 1996, 1997 and 1998, respectively. Representative species of the G. fujikuroi species complex were isolated from 1996 to 1998 Georgia corn survey (162, 104 and 111 isolates, respectively) and tested for mating compatibility. The incidence of isolates belonging to mating population A (F. verticillioides) ranged from 70.2% to 89.5%. Corn survey samples were

  20. Expression of Finger Millet EcDehydrin7 in Transgenic Tobacco Confers Tolerance to Drought Stress.

    PubMed

    Singh, Rajiv Kumar; Singh, Vivek Kumar; Raghavendrarao, Sanagala; Phanindra, Mullapudi Lakshmi Venkata; Venkat Raman, K; Solanke, Amolkumar U; Kumar, Polumetla Ananda; Sharma, Tilak Raj

    2015-09-01

    One of the critical alarming constraints for agriculture is water scarcity. In the current scenario, global warming due to climate change and unpredictable rainfall, drought is going to be a master player and possess a big threat to stagnating gene pool of staple food crops. So it is necessary to understand the mechanisms that enable the plants to cope with drought stress. In this study, effort was made to prospect the role of EcDehydrin7 protein from normalized cDNA library of drought tolerance finger millet in transgenic tobacco. Biochemical and molecular analyses of T0 transgenic plants were done for stress tolerance. Leaf disc assay, seed germination test, dehydration assay, and chlorophyll estimation showed EcDehydrin7 protein directly link to drought tolerance. Northern and qRT PCR analyses shows relatively high expression of EcDehydrin7 protein compare to wild type. T0 transgenic lines EcDehydrin7(11) and EcDehydrin7(15) shows superior expression among all lines under study. In summary, all results suggest that EcDehydrin7 protein has a remarkable role in drought tolerance and may be used for sustainable crop breeding program in other food crops.

  1. Removal of methylene blue from aqueous solution by wood millet carbon optimization using response surface methodology.

    PubMed

    Ghaedi, Mehrorang; Nasiri Kokhdan, Syamak

    2015-02-01

    The use of cheep, non-toxic, safe and easily available adsorbent are efficient and recommended material and alternative to the current expensive substance for pollutant removal from wastewater. The activated carbon prepared from wood waste of local tree (millet) extensively was applied for quantitative removal of methylene blue (MB), while simply. It was used to re-used after heating and washing with alkaline solution of ethanol. This new adsorbent was characterized by using BET surface area measurement, FT-IR, pH determination at zero point of charge (pHZPC) and Boehm titration method. Response surface methodology (RSM) by at least the number of experiments main and interaction of experimental conditions such as pH of solution, contact time, initial dye concentration and adsorbent dosage was optimized and set as pH 7, contact time 18 min, initial dye concentration 20 ppm and 0.2 g of adsorbent. It was found that variable such as pH and amount of adsorbent as solely or combination effects seriously affect the removal percentage. The fitting experimental data with conventional models reveal the applicability of isotherm models Langmuir model for their well presentation and description and Kinetic real rate of adsorption at most conditions efficiently can be represented pseudo-second order, and intra-particle diffusion. It novel material is good candidate for removal of huge amount of MB (20 ppm) in short time (18 min) by consumption of small amount (0.2 g).

  2. Removal of methylene blue from aqueous solution by wood millet carbon optimization using response surface methodology

    NASA Astrophysics Data System (ADS)

    Ghaedi, Mehrorang; Kokhdan, Syamak Nasiri

    2015-02-01

    The use of cheep, non-toxic, safe and easily available adsorbent are efficient and recommended material and alternative to the current expensive substance for pollutant removal from wastewater. The activated carbon prepared from wood waste of local tree (millet) extensively was applied for quantitative removal of methylene blue (MB), while simply. It was used to re-used after heating and washing with alkaline solution of ethanol. This new adsorbent was characterized by using BET surface area measurement, FT-IR, pH determination at zero point of charge (pHZPC) and Boehm titration method. Response surface methodology (RSM) by at least the number of experiments main and interaction of experimental conditions such as pH of solution, contact time, initial dye concentration and adsorbent dosage was optimized and set as pH 7, contact time 18 min, initial dye concentration 20 ppm and 0.2 g of adsorbent. It was found that variable such as pH and amount of adsorbent as solely or combination effects seriously affect the removal percentage. The fitting experimental data with conventional models reveal the applicability of isotherm models Langmuir model for their well presentation and description and Kinetic real rate of adsorption at most conditions efficiently can be represented pseudo-second order, and intra-particle diffusion. It novel material is good candidate for removal of huge amount of MB (20 ppm) in short time (18 min) by consumption of small amount (0.2 g).

  3. Genetic analysis of reciprocal differences in the inheritance of in vitro characters in pearl millet.

    PubMed

    Satyavathi, Valluri V; Manga, V; Rao, Muktinutalapati V Subba; Chittibabu, Malladi

    2016-03-01

    Reciprocal differences persist in nature because of the unequal contribution of cytoplasmic determinants from male and female gametes to the zygote. The inheritance of genetic differences is an important factor that influences various traits, including somatic embryogenesis and regeneration in vitro. In this report, we estimate the cytoplasmic and maternal effects in pearl millet and their adequacy in describing the observed reciprocal differences based on an in depth study of the parents, F2s and reciprocal backcross progenies needed for fitting genetical models. Our study revealed that of the two characters examined, embryogenic callus quantity and regeneration frequency, the former showed a greater proportion of cytoplasmic nuclear interaction whereas the latter showed a greater role of nuclear factors. Additive-maternal effects influenced total callus quantity and dominance-maternal effects influenced total callus quantity, embryogenic callus quantity and regeneration frequency. Dwarfing was associated with the production of large quantities of embryogenic callus that had visually recognizable characteristics. The phenotypic nature of dwarf parents (green dwarf with long narrow leaves) with a genetic basis for a given character controlled by nuclear and cytoplasmic determinants can be exploited for other breeding programs. PMID:27007899

  4. Micro-PIXE mapping of mineral distribution in mature grain of two pearl millet cultivars

    NASA Astrophysics Data System (ADS)

    Minnis-Ndimba, R.; Kruger, J.; Taylor, J. R. N.; Mtshali, C.; Pineda-Vargas, C. A.

    2015-11-01

    Micro-proton-induced X-ray emission (micro-PIXE) was used to map the distribution of several nutritionally important minerals found in the grain tissue of two cultivars of pearl millet (Pennisetum glaucum (L.) R. Br.). The distribution maps revealed that the predominant localisation of minerals was within the germ (consisting of the scutellum and embryo) and the outer grain layers (specifically the pericarp and aleurone); whilst the bulk of the endosperm tissue featured relatively low concentrations of the surveyed minerals. Within the germ, the scutellum was revealed as a major storage tissue for P and K, whilst Ca, Mn and Zn were more prominent within the embryo. Fe was revealed to have a distinctive distribution pattern, confined to the dorsal end of the scutellum; but was also highly concentrated in the outer grain layers. Interestingly, the hilar region was also revealed as a site of high accumulation of minerals, particularly for S, Ca, Mn, Fe and Zn, which may be part of a defensive strategy against infection or damage. Differences between the two cultivars, in terms of the bulk Fe and P content obtained via inductively coupled plasma optical emission spectrometry (ICP-OES), concurred with the average concentration data determined from the analysis of micro-PIXE spectra specifically extracted from the endosperm tissue.

  5. Genetic analysis of reciprocal differences in the inheritance of in vitro characters in pearl millet

    PubMed Central

    Satyavathi, Valluri V; Manga, V.; Rao, Muktinutalapati V. Subba; Chittibabu, Malladi

    2016-01-01

    Abstract Reciprocal differences persist in nature because of the unequal contribution of cytoplasmic determinants from male and female gametes to the zygote. The inheritance of genetic differences is an important factor that influences various traits, including somatic embryogenesis and regeneration in vitro. In this report, we estimate the cytoplasmic and maternal effects in pearl millet and their adequacy in describing the observed reciprocal differences based on an in depth study of the parents, F2s and reciprocal backcross progenies needed for fitting genetical models. Our study revealed that of the two characters examined, embryogenic callus quantity and regeneration frequency, the former showed a greater proportion of cytoplasmic nuclear interaction whereas the latter showed a greater role of nuclear factors. Additive-maternal effects influenced total callus quantity and dominance-maternal effects influenced total callus quantity, embryogenic callus quantity and regeneration frequency. Dwarfing was associated with the production of large quantities of embryogenic callus that had visually recognizable characteristics. The phenotypic nature of dwarf parents (green dwarf with long narrow leaves) with a genetic basis for a given character controlled by nuclear and cytoplasmic determinants can be exploited for other breeding programs. PMID:27007899

  6. Nutritional and antioxidant dispositions of sorghum/millet-based beverages indigenous to Nigeria

    PubMed Central

    Ajiboye, Taofeek O; Iliasu, Ganiyat A; Adeleye, Abdulwasiu O; Abdussalam, Folakemi A; Akinpelu, Shakirat A; Ogunbode, Simiat M; Jimoh, Simiat O; Oloyede, Oyelola B

    2014-01-01

    Sorghum/millet-based beverages, Obiolor and Pito, were evaluated for their nutritional and antioxidant dispositions. Analyzed Obiolor and Pito contained 96% and 97% moisture; 7.8% and 3.7% crude protein; 8.9% and 5.6% available carbohydrate; 0.39% and 0.31% crude fat; 0.3% and 0.2% crude fiber; 2.4% and 1.5% ash; and 459.3 and 164 kJ/g energy value, respectively. Obiolor and Pito (1.0 mL) scavenged 2,2-diphenyl-1-picrylhydrazyl by 87% and 81%; superoxide ion by 65% and 59%; hydrogen peroxide by 79% and 76%; and hydroxyl radical by 82% and 85%, respectively. The beverages significantly reduced ferric ion. Aflatoxin B1-mediated increase in lipid peroxidation products (conjugated dienes, lipid hydroperoxides, and malondialdehydes) and protein carbonyl in the microsomes were significantly (P < 0.05) reduced by the beverages. The data obtained from this study show that the sorghum-based beverages (Obiolor and Pito) can serve as functional foods, as evident from their antioxidant capabilities in addition to their gross energy content. PMID:25473519

  7. Switchgrass (Panicum virgatum L.) Genotypes Differ between Coastal Sites and Inland Road Corridors in the Northeastern US

    PubMed Central

    Ecker, Geoffrey; Zalapa, Juan; Auer, Carol

    2015-01-01

    Switchgrass (Panicum virgatum L.) is a North American grass that exhibits vast genetic diversity across its geographic range. In the Northeastern US, local switchgrass populations were restricted to a narrow coastal zone before European settlement, but current populations inhabit inland road verges raising questions about their origin and genetics. These questions are important because switchgrass lines with novel traits are being cultivated as a biofuel feedstock, and gene flow could impact the genetic integrity and distribution of local populations. This study was designed to determine if: 1) switchgrass plants collected in the Long Island Sound Coastal Lowland coastal Level IV ecoregion represented local populations, and 2) switchgrass plants collected from road verges in the adjacent inland regions were most closely related to local coastal populations or switchgrass from other geographic regions. The study used 18 microsatellite markers to infer the genetic relationships between 122 collected switchgrass plants and a reference dataset consisting of 28 cultivars representing ecotypes, ploidy levels, and lineages from North America. Results showed that 84% of 88 plants collected in the coastal plants were most closely aligned with the Lowland tetraploid genetic pool. Among this group, 61 coastal plants were similar to, but distinct from, all Lowland tetraploid cultivars in the reference dataset leading to the designation of a genetic sub-population called the Southern New England Lowland Tetraploids. In contrast, 67% of 34 plants collected in road verges in the inland ecoregions were most similar to two Upland octoploid cultivars; only 24% of roadside plants were Lowland tetraploid. These results suggest that cryptic, non-local genotypes exist in road verges and that gene flow from biofuels plantations could contribute to further changes in switchgrass population genetics in the Northeast. PMID:26125564

  8. Identification and overexpression of a knotted1-like transcription factor in switchgrass (Panicum virgatum L.) for lignocellulosic feedstock improvement

    DOE PAGESBeta

    Wuddineh, Wegi A.; Mazarei, Mitra; Zhang, Ji -Yi; Turner, Geoffrey B.; Sykes, Robert W.; Decker, Stephen R.; Davis, Mark F.; Udvardi, Michael K.; C. Neal Stewart, Jr.

    2016-04-28

    High biomass production and wide adaptation has made switchgrass (Panicum virgatum L.) an important candidate lignocellulosic bioenergy crop. One major limitation of this and other lignocellulosic feedstocks is the recalcitrance of complex carbohydrates to hydrolysis for conversion to biofuels. Lignin is the major contributor to recalcitrance as it limits the accessibility of cell wall carbohydrates to enzymatic breakdown into fermentable sugars. Therefore, genetic manipulation of the lignin biosynthesis pathway is one strategy to reduce recalcitrance. Here, we identified a switchgrass Knotted1 transcription factor, PvKN1, with the aim of genetically engineering switchgrass for reduced biomass recalcitrance for biofuel production. Gene expressionmore » of the endogenous PvKN1 gene was observed to be highest in young inflorescences and stems. Ectopic overexpression of PvKN1 in switchgrass altered growth, especially in early developmental stages. Transgenic lines had reduced expression of most lignin biosynthetic genes accompanied by a reduction in lignin content suggesting the involvement of PvKN1 in the broad regulation of the lignin biosynthesis pathway. Moreover, the reduced expression of the Gibberellin 20-oxidase (GA20ox) gene in tandem with the increased expression of Gibberellin 2-oxidase (GA2ox) genes in transgenic PvKN1 lines suggest that PvKN1 may exert regulatory effects via modulation of GA signaling. Furthermore, overexpression of PvKN1 altered the expression of cellulose and hemicellulose biosynthetic genes and increased sugar release efficiency in transgenic lines. Our findings demonstrated that switchgrass PvKN1 is a putative ortholog of maize KN1 that is linked to plant lignification and cell wall and development traits as a major regulatory gene. Therefore, targeted overexpression of PvKN1 in bioenergy feedstocks may provide one feasible strategy for reducing biomass recalcitrance and simultaneously improving plant growth characteristics.« less

  9. Identification and Overexpression of a Knotted1-Like Transcription Factor in Switchgrass (Panicum virgatum L.) for Lignocellulosic Feedstock Improvement

    PubMed Central

    Wuddineh, Wegi A.; Mazarei, Mitra; Zhang, Ji-Yi; Turner, Geoffrey B.; Sykes, Robert W.; Decker, Stephen R.; Davis, Mark F.; Udvardi, Michael K.; Stewart, C. Neal

    2016-01-01

    High biomass production and wide adaptation has made switchgrass (Panicum virgatum L.) an important candidate lignocellulosic bioenergy crop. One major limitation of this and other lignocellulosic feedstocks is the recalcitrance of complex carbohydrates to hydrolysis for conversion to biofuels. Lignin is the major contributor to recalcitrance as it limits the accessibility of cell wall carbohydrates to enzymatic breakdown into fermentable sugars. Therefore, genetic manipulation of the lignin biosynthesis pathway is one strategy to reduce recalcitrance. Here, we identified a switchgrass Knotted1 transcription factor, PvKN1, with the aim of genetically engineering switchgrass for reduced biomass recalcitrance for biofuel production. Gene expression of the endogenous PvKN1 gene was observed to be highest in young inflorescences and stems. Ectopic overexpression of PvKN1 in switchgrass altered growth, especially in early developmental stages. Transgenic lines had reduced expression of most lignin biosynthetic genes accompanied by a reduction in lignin content suggesting the involvement of PvKN1 in the broad regulation of the lignin biosynthesis pathway. Moreover, the reduced expression of the Gibberellin 20-oxidase (GA20ox) gene in tandem with the increased expression of Gibberellin 2-oxidase (GA2ox) genes in transgenic PvKN1 lines suggest that PvKN1 may exert regulatory effects via modulation of GA signaling. Furthermore, overexpression of PvKN1 altered the expression of cellulose and hemicellulose biosynthetic genes and increased sugar release efficiency in transgenic lines. Our results demonstrated that switchgrass PvKN1 is a putative ortholog of maize KN1 that is linked to plant lignification and cell wall and development traits as a major regulatory gene. Therefore, targeted overexpression of PvKN1 in bioenergy feedstocks may provide one feasible strategy for reducing biomass recalcitrance and simultaneously improving plant growth characteristics. PMID:27200006

  10. Effects of fluoride emissions on two tropical grasses: Chloris gayana and Panicum maximum cv. Colonião.

    PubMed

    Divan Junior, Armando Molina; Oliva, Marco Antonio; Martinez, Carlos Alberto; Cambraia, José

    2007-06-01

    In order to detect early effects of plant contamination by fluoride emission on two tropical grasses, Chloris gayana and Panicum maximum, previously cultivated under greenhouse conditions, were exposed to a single source of fluoride emission at a station at 1.1 km from an aluminum smelter in Ouro Preto, MG, Brazil. Controls were placed at a reference station 78km from the fluoride source. During an 8-day period of exposure leaf injury, ionic permeability, photosynthetic rates, stomatal conductance, transpiration, chlorophyll a fluorescence and chlorophyll, soluble carbohydrates and fluoride contents were evaluated. Plants at the Ouro Preto station showed an increase in fluoride content, leaf injury and ionic permeability. Symptoms of injury by fluoride exposure were visible after 3-4 days in both species. High electrolyte leakage and correlation coefficients between the total ionic permeability and the fluoride content in leaves indicate a fluoride effect on the structural and/or functional integrity of the cellular membranes. Leaf fluoride injuries were quite different in the two species. In C. gayana necroses were limited to the leaf tips, while in P. maximum damages were observed in the whole leaf, suggesting a higher susceptibility of this latter species to fluoride. Nonetheless, neither grass showed statistical differences with respect to photosynthetic rates, stomatal conductance, transpiration, chlorophyll a fluorescence and chlorophyll content in leaves without any apparent fluoride injury. Plants at the Ouro Preto station showed a significant decrease in reducing sugar content between 3 and 5 days of exposure to fluoride, but thereafter reducing sugar content increased reaching the content of control plants. Fluoride exposed plants also showed a remarkable starch content reduction, remaining always much lower than those at the reference station.

  11. Switchgrass (Panicum virgatum L.) Genotypes Differ between Coastal Sites and Inland Road Corridors in the Northeastern US.

    PubMed

    Ecker, Geoffrey; Zalapa, Juan; Auer, Carol

    2015-01-01

    Switchgrass (Panicum virgatum L.) is a North American grass that exhibits vast genetic diversity across its geographic range. In the Northeastern US, local switchgrass populations were restricted to a narrow coastal zone before European settlement, but current populations inhabit inland road verges raising questions about their origin and genetics. These questions are important because switchgrass lines with novel traits are being cultivated as a biofuel feedstock, and gene flow could impact the genetic integrity and distribution of local populations. This study was designed to determine if: 1) switchgrass plants collected in the Long Island Sound Coastal Lowland coastal Level IV ecoregion represented local populations, and 2) switchgrass plants collected from road verges in the adjacent inland regions were most closely related to local coastal populations or switchgrass from other geographic regions. The study used 18 microsatellite markers to infer the genetic relationships between 122 collected switchgrass plants and a reference dataset consisting of 28 cultivars representing ecotypes, ploidy levels, and lineages from North America. Results showed that 84% of 88 plants collected in the coastal plants were most closely aligned with the Lowland tetraploid genetic pool. Among this group, 61 coastal plants were similar to, but distinct from, all Lowland tetraploid cultivars in the reference dataset leading to the designation of a genetic sub-population called the Southern New England Lowland Tetraploids. In contrast, 67% of 34 plants collected in road verges in the inland ecoregions were most similar to two Upland octoploid cultivars; only 24% of roadside plants were Lowland tetraploid. These results suggest that cryptic, non-local genotypes exist in road verges and that gene flow from biofuels plantations could contribute to further changes in switchgrass population genetics in the Northeast. PMID:26125564

  12. Relative Performance of Non-Local Cultivars and Local, Wild Populations of Switchgrass (Panicum virgatum) in Competition Experiments.

    PubMed

    Palik, D J; Snow, A A; Stottlemyer, A L; Miriti, M N; Heaton, E A

    2016-01-01

    The possibility of increased invasiveness in cultivated varieties of native perennial species is a question of interest in biofuel risk assessment. Competitive success is a key factor in the fitness and invasive potential of perennial plants, and thus the large-scale release of high-yielding biomass cultivars warrants empirical comparisons with local conspecifics in the presence of competitors. We evaluated the performance of non-local cultivars and local wild biotypes of the tallgrass species Panicum virgatum L. (switchgrass) in competition experiments during two growing seasons in Ohio and Iowa. At each location, we measured growth and reproductive traits (plant height, tiller number, flowering time, aboveground biomass, and seed production) of four non-locally sourced cultivars and two locally collected wild biotypes. Plants were grown in common garden experiments under three types of competition, referred to as none, moderate (with Schizachyrium scoparium), and high (with Bromus inermis). In both states, the two "lowland" cultivars grew taller, flowered later, and produced between 2x and 7.5x more biomass and between 3x and 34x more seeds per plant than local wild biotypes, while the other two cultivars were comparable to wild biotypes in these traits. Competition did not affect relative differences among biotypes, with the exception of shoot number, which was more similar among biotypes under high competition. Insights into functional differences between cultivars and wild biotypes are crucial for developing biomass crops while mitigating the potential for invasiveness. Here, two of the four cultivars generally performed better than wild biotypes, indicating that these biotypes may pose more of a risk in terms of their ability to establish vigorous feral populations in new regions outside of their area of origin. Our results support an ongoing assessment of switchgrass cultivars developed for large-scale planting for biofuels. PMID:27120201

  13. Relative Performance of Non-Local Cultivars and Local, Wild Populations of Switchgrass (Panicum virgatum) in Competition Experiments

    PubMed Central

    Palik, D. J.; Snow, A. A.; Stottlemyer, A. L.; Miriti, M. N.; Heaton, E. A.

    2016-01-01

    The possibility of increased invasiveness in cultivated varieties of native perennial species is a question of interest in biofuel risk assessment. Competitive success is a key factor in the fitness and invasive potential of perennial plants, and thus the large-scale release of high-yielding biomass cultivars warrants empirical comparisons with local conspecifics in the presence of competitors. We evaluated the performance of non-local cultivars and local wild biotypes of the tallgrass species Panicum virgatum L. (switchgrass) in competition experiments during two growing seasons in Ohio and Iowa. At each location, we measured growth and reproductive traits (plant height, tiller number, flowering time, aboveground biomass, and seed production) of four non-locally sourced cultivars and two locally collected wild biotypes. Plants were grown in common garden experiments under three types of competition, referred to as none, moderate (with Schizachyrium scoparium), and high (with Bromus inermis). In both states, the two “lowland” cultivars grew taller, flowered later, and produced between 2x and 7.5x more biomass and between 3x and 34x more seeds per plant than local wild biotypes, while the other two cultivars were comparable to wild biotypes in these traits. Competition did not affect relative differences among biotypes, with the exception of shoot number, which was more similar among biotypes under high competition. Insights into functional differences between cultivars and wild biotypes are crucial for developing biomass crops while mitigating the potential for invasiveness. Here, two of the four cultivars generally performed better than wild biotypes, indicating that these biotypes may pose more of a risk in terms of their ability to establish vigorous feral populations in new regions outside of their area of origin. Our results support an ongoing assessment of switchgrass cultivars developed for large-scale planting for biofuels. PMID:27120201

  14. Identification and Overexpression of a Knotted1-Like Transcription Factor in Switchgrass (Panicum virgatum L.) for Lignocellulosic Feedstock Improvement.

    PubMed

    Wuddineh, Wegi A; Mazarei, Mitra; Zhang, Ji-Yi; Turner, Geoffrey B; Sykes, Robert W; Decker, Stephen R; Davis, Mark F; Udvardi, Michael K; Stewart, C Neal

    2016-01-01

    High biomass production and wide adaptation has made switchgrass (Panicum virgatum L.) an important candidate lignocellulosic bioenergy crop. One major limitation of this and other lignocellulosic feedstocks is the recalcitrance of complex carbohydrates to hydrolysis for conversion to biofuels. Lignin is the major contributor to recalcitrance as it limits the accessibility of cell wall carbohydrates to enzymatic breakdown into fermentable sugars. Therefore, genetic manipulation of the lignin biosynthesis pathway is one strategy to reduce recalcitrance. Here, we identified a switchgrass Knotted1 transcription factor, PvKN1, with the aim of genetically engineering switchgrass for reduced biomass recalcitrance for biofuel production. Gene expression of the endogenous PvKN1 gene was observed to be highest in young inflorescences and stems. Ectopic overexpression of PvKN1 in switchgrass altered growth, especially in early developmental stages. Transgenic lines had reduced expression of most lignin biosynthetic genes accompanied by a reduction in lignin content suggesting the involvement of PvKN1 in the broad regulation of the lignin biosynthesis pathway. Moreover, the reduced expression of the Gibberellin 20-oxidase (GA20ox) gene in tandem with the increased expression of Gibberellin 2-oxidase (GA2ox) genes in transgenic PvKN1 lines suggest that PvKN1 may exert regulatory effects via modulation of GA signaling. Furthermore, overexpression of PvKN1 altered the expression of cellulose and hemicellulose biosynthetic genes and increased sugar release efficiency in transgenic lines. Our results demonstrated that switchgrass PvKN1 is a putative ortholog of maize KN1 that is linked to plant lignification and cell wall and development traits as a major regulatory gene. Therefore, targeted overexpression of PvKN1 in bioenergy feedstocks may provide one feasible strategy for reducing biomass recalcitrance and simultaneously improving plant growth characteristics. PMID:27200006

  15. Simple and economical assay systems for evaluation of phosphinothricin resistant transgenics of sorghum, Sorghum bicolor. (L.) Moench., and pearl millet, Pennisetum glaucum (L.) R. Br.

    PubMed

    Harshavardhan, D; Santha, B; Rani, T S; Ulaganathan, K; Madhulety, T Y; Laxminarayana, C; Seetharama, N

    2003-02-01

    Five simple and rapid methods for evaluation of sorghum and pearl millet transgenics resistant to herbicide phosphinothricin (used as selectable marker) were studied. For rapid in vitro selection, three assays (establishment of sensitivity curves for embryogenic calli, determination of lethal doses for seed germination, and a rapid screening of cut young leaves based on the colour change of the medium) were established. For rapid screening of transgenic progeny, effects of in vivo Basta leaf spray and dip tests were studied at three different morphological stages. For all the above assays, LD50, and LD100 values were higher for pearl millet than sorghum. However, in both the crops, genotype effect was not significant. The assays standardized in the study were found to be effective for rapid, economical and mass-scale identification and characterization of transgenic plants of sorghum and pearl millet.

  16. Genome-wide development of transposable elements-based markers in foxtail millet and construction of an integrated database.

    PubMed

    Yadav, Chandra Bhan; Bonthala, Venkata Suresh; Muthamilarasan, Mehanathan; Pandey, Garima; Khan, Yusuf; Prasad, Manoj

    2015-02-01

    Transposable elements (TEs) are major components of plant genome and are reported to play significant roles in functional genome diversity and phenotypic variations. Several TEs are highly polymorphic for insert location in the genome and this facilitates development of TE-based markers for various genotyping purposes. Considering this, a genome-wide analysis was performed in the model plant foxtail millet. A total of 30,706 TEs were identified and classified as DNA transposons (24,386), full-length Copia type (1,038), partial or solo Copia type (10,118), full-length Gypsy type (1,570), partial or solo Gypsy type (23,293) and Long- and Short-Interspersed Nuclear Elements (3,659 and 53, respectively). Further, 20,278 TE-based markers were developed, namely Retrotransposon-Based Insertion Polymorphisms (4,801, ∼24%), Inter-Retrotransposon Amplified Polymorphisms (3,239, ∼16%), Repeat Junction Markers (4,451, ∼22%), Repeat Junction-Junction Markers (329, ∼2%), Insertion-Site-Based Polymorphisms (7,401, ∼36%) and Retrotransposon-Microsatellite Amplified Polymorphisms (57, 0.2%). A total of 134 Repeat Junction Markers were screened in 96 accessions of Setaria italica and 3 wild Setaria accessions of which 30 showed polymorphism. Moreover, an open access database for these developed resources was constructed (Foxtail millet Transposable Elements-based Marker Database; http://59.163.192.83/ltrdb/index.html). Taken together, this study would serve as a valuable resource for large-scale genotyping applications in foxtail millet and related grass species.

  17. Overcoming Phosphorus Deficiency in West African Pearl Millet and Sorghum Production Systems: Promising Options for Crop Improvement

    PubMed Central

    Gemenet, Dorcus C.; Leiser, Willmar L.; Beggi, Francesca; Herrmann, Ludger H.; Vadez, Vincent; Rattunde, Henry F. W.; Weltzien, Eva; Hash, Charles T.; Buerkert, Andreas; Haussmann, Bettina I. G.

    2016-01-01

    West Africa (WA) is among the most food insecure regions. Rapid human population growth and stagnating crop yields greatly contribute to this fact. Poor soil fertility, especially low plant available phosphorus (P) is constraining food production in the region. P-fertilizer use in WA is among the lowest in the world due to inaccessibility and high prices, often unaffordable to resource-poor subsistence farmers. This article provides an overview of soil P-deficiency in WA and opportunities to overcome it by exploiting sorghum and pearl millet genetic diversity. The topic is examined from the perspectives of plant breeding, soil science, plant physiology, plant nutrition, and agronomy, thereby referring to recent results obtained in a joint interdisciplinary research project, and reported literature. Specific objectives are to summarize: (1) The global problem of P scarcity and how it will affect WA farmers; (2) Soil P dynamics in WA soils; (3) Plant responses to P deficiency; (4) Opportunities to breed for improved crop adaptation to P-limited conditions; (5) Challenges and trade-offs for improving sorghum and pearl millet adaptation to low-P conditions in WA; and (6) Systems approaches to address soil P-deficiency in WA. Sorghum and pearl millet in WA exhibit highly significant genetic variation for P-uptake efficiency, P-utilization efficiency, and grain yield under P-limited conditions indicating the possibility of breeding P-efficient varieties. Direct selection under P-limited conditions was more efficient than indirect selection under high-P conditions. Combining P-uptake and P-utilization efficiency is recommendable for WA to avoid further soil mining. Genomic regions responsible for P-uptake, P-utilization efficiency, and grain yield under low-P have been identified in WA sorghum and pearl millet, and marker-assisted selection could be possible once these genomic regions are validated. Developing P-efficient genotypes may not, however, be a sustainable

  18. Crop Monitoring as a Tool for Modelling the Genesis of Millet Prices in Senegal

    NASA Astrophysics Data System (ADS)

    Jacques, D.; Marinho, E.; Defourny, P.; Waldner, F.; d'Andrimont, R.

    2015-12-01

    Food security in Sahelian countries strongly relies on the ability of markets to transfer staplesfrom surplus to deficit areas. Market failures, leading to the inefficient geographical allocation of food,are expected to emerge from high transportation costs and information asymmetries that are commonin moderately developed countries. As a result, important price differentials are observed betweenproducing and consuming areas which damages both poor producers and food insecure consumers. Itis then vital for policy makers to understand how the prices of agricultural commodities are formed byaccounting for the existing market imperfections in addition to local demand and supply considerations. To address this issue, we have gathered an unique and diversified set of data for Senegal andintegrated it in a spatially explicit model that simulates the functioning of agricultural markets, that isfully consistent with the economic theory. Our departure point is a local demand and supply modelaround each market having its catchment areas determined by the road network. We estimate the localsupply of agricultural commodities from satellite imagery while the demand is assumed to be a functionof the population living in the area. From this point on, profitable transactions between areas with lowprices to areas with high prices are simulated for different levels of per kilometer transportation costand information flows (derived from call details records i.e. mobile phone data). The simulated prices are then comparedwith the actual millet prices. Despite the parsimony of the model that estimates only two parameters, i.e. the per kilometertransportation cost and the information asymmetry resulting from low levels of mobile phone activitybetween markets, it impressively explains more than 80% of the price differentials observed in the 40markets included in the analysis. In one hand these results can be used in the assessment of the socialwelfare impacts of the further development of

  19. Improvement of resistance to rust through recurrent selection in pearl millet

    SciTech Connect

    Tapsoba, H.; Wilson, J.P.; Hanna, W.W.

    1997-04-01

    Two pearl millet [Pennisetum glaucum (L.) R.Br. = P. typhoides (Burm.) Staff & Hubb., P. americanum (L.) K. Schum.] bulk populations, Tift No. 2 and Tift No. 5, served as base populations for four cycles of recurrent selection against susceptibility to Puccinia substriata Ell. & Barth, var. indica Ramachar & Cumm. A bulk inoculum of the pathogen was used. The objectives were to evaluate the progress achieved regarding overall resistance to the pathogen in the field and resistance to different races of the pathogen, and also to evaluate changes in unselected traits. During selection, the frequency of rust resistant plants continuously increased from about 30% in each base population to more than 85% by the third cycle of selection in both populations. An average increase of about 21 and 18% per cycle was obtained in Tift No. 2 and Tift No. 5, respectively. A continuous increase of the frequency of plants resistant to some races of the pathogen was also obtained. In Tift No. 5, 80% of the plants were resistant to eight races by the third cycle of selection. The accumulation of resistance observed in the seedlings was manifested in the field, both in 1993 and 1994, by a reduction of the final rust severity from the base population to the fourth selection cycle of both populations. This improvement in resistance to the rust pathogen was accompanied by an increase in the frequency of plants resistant to Pyricularia grisea (Cooke) Sacc. only in Tift No. 2. Despite the improvement in the selected character, genetic variability for agronomic traits such as plant height, number of culms/plant, flowering date, and panicle length was successfully maintained within each population. 20 refs., 1 fig., 7 tabs.

  20. Whole plant acclimation responses by finger millet to low nitrogen stress

    PubMed Central

    Goron, Travis L.; Bhosekar, Vijay K.; Shearer, Charles R.; Watts, Sophia; Raizada, Manish N.

    2015-01-01

    The small grain cereal, finger millet (FM, Eleusine coracana L. Gaertn), is valued by subsistence farmers in India and East Africa as a low-input crop. It is reported by farmers to require no added nitrogen (N), or only residual N, to produce grain. Exact mechanisms underlying the acclimation responses of FM to low N are largely unknown, both above and below ground. In particular, the responses of FM roots and root hairs to N or any other nutrient have not previously been reported. Given its low N requirement, FM also provides a rare opportunity to study long-term responses to N starvation in a cereal species. The objective of this study was to survey the shoot and root morphometric responses of FM, including root hairs, to low N stress. Plants were grown in pails in a semi-hydroponic system on clay containing extremely low background N, supplemented with N or no N. To our surprise, plants grown without deliberately added N grew to maturity, looked relatively normal and produced healthy seed heads. Plants responded to the low N treatment by decreasing shoot, root, and seed head biomass. These declines under low N were associated with decreased shoot tiller number, crown root number, total crown root length and total lateral root length, but with no consistent changes in root hair traits. Changes in tiller and crown root number appeared to coordinate the above and below ground acclimation responses to N. We discuss the remarkable ability of FM to grow to maturity without deliberately added N. The results suggest that FM should be further explored to understand this trait. Our observations are consistent with indigenous knowledge from subsistence farmers in Africa and Asia, where it is reported that this crop can survive extreme environments. PMID:26347768

  1. Enhancement of nutritional value of finger millet-based food (Indian dosa) by co-fermentation with horse gram flour.

    PubMed

    Palanisamy, Bruntha Devi; Rajendran, Vijayabharathi; Sathyaseelan, Sathyabama; Bhat, Rajeev; Venkatesan, Brindha Priyadarisini

    2012-02-01

    Co-fermentation of finger millet with horse gram was carried out to produce inexpensive protein-rich food (dosa-an Indian breakfast food). Natural fermentation of finger millet-horse gram flour blend in different proportions (2:1, 3:1, 4:1 and 5:1) was performed for 24 h. Biochemical analysis showed reasonable drop in pH (6.6-4.2) and starch content (25.52%) with considerable augment in titratable acidity (0.168-1.046%), soluble proteins (1.1-fold) and free amino acids (2.6-fold) at 16 h. Lactic acid bacteria dominated yeast counts throughout the fermentation accompanied by a decrease in total soluble and reducing sugars. Total essential amino acids increased 1.1-fold at 16-h fermentation with protein containing 48.68% of essential amino acids over total amino acids. Lysine increased from 5.87 to 6.73 g of amino acid/100 g of total amino acids. Dosa, prepared from 16-h fermented batter, showed better sensory attributes for 4:1 ratio. The formulated new product might be used to overcome the protein-energy malnutrition problems. PMID:21696301

  2. Somatic hybridization in the Gramineae: Saccharum officinarum L. (sugarcane) and Pennisetum americanum (L.) K. Schum. (pearl millet)

    PubMed Central

    Tabaeizadeh, Zohreh; Ferl, Robert J.; Vasil, Indra K.

    1986-01-01

    Somatic hybrid cell lines with embryogenic capacity were obtained by fusion of protoplasts isolated from an embryogenic cell line of sugarcane with inactivated protoplasts of an S-(2-aminoethyl)-L-cysteine (Aet-Cys)-resistant cell line of pearl millet. Initial selection for putative hybrids was performed by plating protoplast-derived microcolonies onto medium containing 300 μg of Aet-Cys per ml. Calli growing in the presence of Aet-Cys were screened with respect to their electrophoretic pattern of phosphogluconate dehydrogenase (6-phospho-D-gluconate; EC 1.1.1.44), a dimeric enzyme. The somatic hybrid calli showed both parental homodimer bands plus an intermediate heterodimer band. Somatic hybrid lines were characterized further by electrophoretic patterns of shikimate dehydrogenase (shikimate; EC 1.1.1.25) and arylesterase (aryl-ester hydrolase; EC 3.1.1.2). All cell lines expressed the nuclear genomes of both parents. Use of a maize ribosomal DNA probe allowed the identification of diagnostic ribosomal DNA fragments in Xba I digests of total DNA in both parents and the somatic hybrids. The somatic hybrid lines carried both sugarcane and pearl millet ribosomal DNA fragments. The somatic hybrid calli formed somatic embryos. The banding pattern of phosphogluconate dehydrogenase from the somatic embryos was similar to that of the somatic hybrid calli. Images PMID:16593739

  3. Structure, organization and evolution of ADP-ribosylation factors in rice and foxtail millet, and their expression in rice

    PubMed Central

    Muthamilarasan, Mehanathan; Mangu, Venkata R.; Zandkarimi, Hana; Prasad, Manoj; Baisakh, Niranjan

    2016-01-01

    ADP-ribosylation factors (ARFs) have been reported to function in diverse physiological and molecular activities. Recent evidences also demonstrate the involvement of ARFs in conferring tolerance to biotic and abiotic stresses in plant species. In the present study, 23 and 25 ARF proteins were identified in C3 model- rice and C4 model- foxtail millet, respectively. These proteins are classified into four classes (I–IV) based on phylogenetic analysis, with ARFs in classes I–III and ARF-like proteins (ARLs) in class IV. Sequence alignment and domain analysis revealed the presence of conserved and additional motifs, which may contribute to neo- and sub-functionalization of these proteins. Promoter analysis showed the presence of several cis-regulatory elements related to stress and hormone response, indicating their role in stress regulatory network. Expression analysis of rice ARFs and ARLs in different tissues, stresses and abscisic acid treatment highlighted temporal and spatial diversification of gene expression. Five rice cultivars screened for allelic variations in OsARF genes showed the presence of allelic polymorphisms in few gene loci. Altogether, the study provides insights on characteristics of ARF/ARL genes in rice and foxtail millet, which could be deployed for further functional analysis to extrapolate their precise roles in abiotic stress responses. PMID:27097755

  4. Development of Genomic and Genetic Tools for Foxtail Millet, and Use of These Tools in the Improvement of Biomass Production for Bioenergy Crops

    SciTech Connect

    Doust, Andrew, N.

    2011-11-11

    The overall aim of this research was to develop genomic and genetic tools in foxtail millet that will be useful in improving biomass production in bioenergy crops such as switchgrass, napier grass, and pearl millet. A variety of approaches have been implemented, and our lab has been primarily involved in genome analysis and quantitative genetic analysis. Our progress in these activities has been substantially helped by the genomic sequence of foxtail millet produced by the Joint Genome Institute (Bennetzen et al., in prep). In particular, the annotation and analysis of candidate genes for architecture, biomass production and flowering has led to new insights into the control of branching and flowering time, and has shown how closely related flowering time is to vegetative architectural development and biomass accumulation. The differences in genetic control identified at high and low density plantings have direct relevance to the breeding of bioenergy grasses that are tolerant of high planting densities. The developmental analyses have shown how plant architecture changes over time and may indicate which genes may best be manipulated at various times during development to obtain required biomass characteristics. This data contributes to the overall aim of significantly improving genetic and genomic tools in foxtail millet that can be directed to improvement of bioenergy grasses such as switchgrass, where it is important to maximize vegetative growth for greatest biomass production.

  5. Development of high-density linkage map and tagging leaf spot resistance in pearl millet using genotyping-by-sequencing markers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pearl millet is an important forage and grain crop in many parts of the world. Genome mapping studies are a prerequisite for tagging agronomically important traits. Genotyping-by-Sequencing (GBS) markers can be used to build high density linkage maps even in species lacking a reference genome. A re...

  6. Effects of raw and diluted municipal sewage effluent with micronutrient foliar sprays on the growth and nutrient concentration of foxtail millet in southeast Iran.

    PubMed

    Asgharipour, Mohammad Reza; Reza Azizmoghaddam, Hamid

    2012-10-01

    In this study, the effect of irrigation with raw or diluted municipal sewage effluent accompanied by foliar micronutrient fertilizer sprays was examined on the growth, dry matter accumulation, grain yield, and mineral nutrients in foxtail millet plants. The experimental design was a split plot with three irrigation sources: raw sewage, 50% diluted sewage, and well water comprising the main treatments, and four combinations of Mn and Zn foliar sprays as sub-treatments that were applied with four replications. The experiment was conducted in 2009 at the Zabol University research farm in Zabol, south Iran. The applied municipal sewage effluent contained higher levels of micronutrients and macronutrients and exhibited greater degrees of electrical conductivity compared to well water. Because of the small scale of industrial activities in Zabol, the amount of heavy metals in the sewage was negligible (below the limits set for irrigation water in agricultural lands); these contaminants would not be severely detrimental to crop growth. The experimental results indicated that irrigation of plants with raw or diluted sewage stimulates the measured growth and productivity parameters of foxtail millet plants. The concentrations of micronutrients and macronutrients were also positively affected. These stimulations were attributed to the presence of high levels of such essential nutrients as N, P, and organic matter in wastewater. Supplied in sewage water alone, Mn and Zn were not able to raise the productivity of millet to the level obtained using fertilizers at the recommended values; this by itself indicated that additional nutrients from fertilizers are required to obtain higher levels of millet productivity with sewage farming. Despite the differences in nutrient concentrations among the different irrigation water sources, the micronutrient foliar sprays did not affect the concentrations of micronutrients and macronutrients in foxtail millet plants. These results suggested

  7. Structural characterization (1->2)-beta-xylose-(1->3)-alpha-arabinose-containing oligosaccharide products of extracted switchgrass (Panicum virgatum, L.) xylan treatment with alpha-arabinofuranosidase and beta-endo-xylanase.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum, L.) is a potential dedicated biomass crop for use in biocatalytic conversion systems to biofuels. Nearly 30% of switchgrass cell wall material is xylan. The complete depolymerization of xylan is desirable both as an additional carbon source for microbial fermentation a...

  8. Large-scale production, harvest and logistics of switchgrass (Panicum virgatum L.) - current technology and envisioning a mature technology

    SciTech Connect

    Sokhansanj, Shahabaddine; Turhollow, Jr., Anthony; Mani, Sudhagar; Kumar, Amit; Bransby, David; Lynd, L.; Laser, Mark

    2009-03-01

    Switchgrass (Panicum virgatum L.) is a promising cellulosic biomass feedstock for biorefineries and biofuel production. This paper reviews current and future potential technologies for production, harvest, storage, and transportation of switchgrass. Our analysis indicates that for a yield of 10 Mg ha 1, the current cost of producing switchgrass (after establishment) is about $41.50 Mg 1. The costs may be reduced to about half this if the yield is increased to 30 Mg ha 1 through genetic improvement, intensive crop management, and/or optimized inputs. At a yield of 10 Mg ha 1, we estimate that harvesting costs range from $23.72 Mg 1 for current baling technology to less than $16 Mg 1 when using a loafing collection system. At yields of 20 and 30 Mg ha 1 with an improved loafing system, harvesting costs are even lower at $12.75 Mg 1 and $9.59 Mg 1, respectively. Transport costs vary depending upon yield and fraction of land under switchgrass, bulk density of biomass, and total annual demand of a biorefinery. For a 2000 Mg d 1 plant and an annual yield of 10 Mg ha 1, the transport cost is an estimated $15.42 Mg 1, assuming 25% of the land is under switchgrass production. Total delivered cost of switchgrass using current baling technology is $80.64 Mg 1, requiring an energy input of 8.5% of the feedstock higher heating value (HHV). With mature technology, for example, a large, loaf collection system, the total delivered cost is reduced to about $71.16 Mg 1 with 7.8% of the feedstock HHV required as input. Further cost reduction can be achieved by combining mature technology with increased crop productivity. Delivered cost and energy input do not vary significantly as biorefinery capacity increases from 2000 Mg d 1 to 5000 Mg d 1 because the cost of increased distance to access a larger volume feedstock offsets the gains in increased biorefinery capacity. This paper outlines possible scenarios for the expansion of switchgrass handling to 30 Tg (million Mg) in 2015 and

  9. Etude de production et de caracterisation de biocharbons de panic erige (Panicum virgatum L.) obtenus par pyrolyse

    NASA Astrophysics Data System (ADS)

    Pilon, Guillaume

    This research aimed at the production of biomass char under pyrolytic conditions, targeting biochar as soil amendment, while also considering its application as biocoal, either for bioenergy or subsequent upgrading. The production of biomass char was performed using two bench-scale, batch-type, fixed-bed reactors, each with an operating capacity of 1 and 25 gw.b. /batch, respectively. Switchgrass (Panicum virgatum) has been used for the tests. Production conditions studied implied temperatures of 300, 400 and 500 °C with short residence times (2.5 and 5 min). As well, the effect of using CO2 as vector gas has been compared to a common inert environment of N2. The effects of the previously mentioned parameters were correlated with some important physicochemical characteristics of biomass char. Analyses were also performed on complementary pyrolytic products (bio-oil and gas). The biomass char extraction was performed using a Soxhlet and dichloromethane was used as extracting solvent. The extracts were then characterized by GC-MS thus allowing the identification of several compounds. Specific pyrolysis conditions used at 300 °C - N2 with the 1 g/batch reactor, such as high heating rates as well as high convection conditions, presented advantegeous biomass char yields and properties, and, possible torrefaction process productivity improvement (in comparison to reported literature, such as Gilbert et al. [2009]). The char extracts as well as the bio-oils analysis (also performed using GC-MS), all generated from the 25 g/batch reactor, showed major differences among the compounds obtained from the CO2 and N2 environments, respectively. Several compounds observed in the char extracts appeared less concentrated in the CO2 environment vs N2, for the same reaction temperatures. As an example, at 400 °C, furfural was found only in char extracts from N2 environment as compared to the CO2 environment. Among all studied conditions (for both reactors), only naphthalene and

  10. Experimental and bioinformatic characterization of a recombinant polygalacturonase-inhibitor protein from pearl millet and its interaction with fungal polygalacturonases

    PubMed Central

    Prabhu, S. Ashok; Singh, Ratna; Kolkenbrock, Stephan; Sujeeth, Neerakkal; El Gueddari, Nour Eddine; Moerschbacher, Bruno M.; Kini, Ramachandra K.; Wagenknecht, Martin

    2014-01-01

    Polygalacturonases (PGs) are hydrolytic enzymes employed by several phytopathogens to weaken the plant cell wall by degrading homopolygalacturonan, a major constituent of pectin. Plants fight back by employing polygalacturonase-inhibitor proteins (PGIPs). The present study compared the inhibition potential of pearl millet PGIP (Pennisetum glaucum; PglPGIP1) with the known inhibition of Phaseolus vulgaris PGIP (PvPGIP2) against two PGs, the PG-II isoform from Aspergillus niger (AnPGII) and the PG-III isoform from Fusarium moniliforme (FmPGIII). The key rationale was to elucidate the relationship between the extent of sequence similarity of the PGIPs and the corresponding PG inhibition potential. First, a pearl millet pgip gene (Pglpgip1) was isolated and phylogenetically placed among monocot PGIPs alongside foxtail millet (Setaria italica). Upstream sequence analysis of Pglpgip1 identified important cis-elements responsive to light, plant stress hormones, and anoxic stress. PglPGIP1, heterologously produced in Escherichia coli, partially inhibited AnPGII non-competitively with a pH optimum between 4.0 and 4.5, and showed no inhibition against FmPGIII. Docking analysis showed that the concave surface of PglPGIP1 interacted strongly with the N-terminal region of AnPGII away from the active site, whereas it weakly interacted with the C-terminus of FmPGIII. Interestingly, PglPGIP1 and PvPGIP2 employed similar motif regions with few identical amino acids for interaction with AnPGII at non-substrate-binding sites; however, they engaged different regions of AnPGII. Computational mutagenesis predicted D126 (PglPGIP1)–K39 (AnPGII) to be the most significant binding contact in the PglPGIP1–AnPGII complex. Such protein–protein interaction studies are crucial in the future generation of designer host proteins for improved resistance against ever-evolving pathogen virulence factors. PMID:24980909

  11. Assessing climate change impacts on sorghum and millet yields in the Sudanian and Sahelian savannas of West Africa

    NASA Astrophysics Data System (ADS)

    Sultan, B.; Roudier, P.; Quirion, P.; Alhassane, A.; Muller, B.; Dingkuhn, M.; Ciais, P.; Guimberteau, M.; Traore, S.; Baron, C.

    2013-03-01

    Sub-Saharan West Africa is a vulnerable region where a better quantification and understanding of the impact of climate change on crop yields is urgently needed. Here, we have applied the process-based crop model SARRA-H calibrated and validated over multi-year field trials and surveys at eight contrasting sites in terms of climate and agricultural practices in Senegal, Mali, Burkina Faso and Niger. The model gives a reasonable correlation with observed yields of sorghum and millet under a range of cultivars and traditional crop management practices. We applied the model to more than 7000 simulations of yields of sorghum and millet for 35 stations across West Africa and under very different future climate conditions. We took into account 35 possible climate scenarios by combining precipitation anomalies from -20% to 20% and temperature anomalies from +0 to +6 °C. We found that most of the 35 scenarios (31/35) showed a negative impact on yields, up to -41% for +6 °C/ - 20% rainfall. Moreover, the potential future climate impacts on yields are very different from those recorded in the recent past. This is because of the increasingly adverse role of higher temperatures in reducing crop yields, irrespective of rainfall changes. When warming exceeds +2 °C, negative impacts caused by temperature rise cannot be counteracted by any rainfall change. The probability of a yield reduction appears to be greater in the Sudanian region (southern Senegal, Mali, Burkina Faso, northern Togo and Benin), because of an exacerbated sensitivity to temperature changes compared to the Sahelian region (Niger, Mali, northern parts of Senegal and Burkina Faso), where crop yields are more sensitive to rainfall change. Finally, our simulations show that the photoperiod-sensitive traditional cultivars of millet and sorghum used by local farmers for centuries seem more resilient to future climate conditions than modern cultivars bred for their high yield potential (-28% versus -40% for

  12. Optimizing rainwater partitioning and millet production on degraded land in Niger using Water and Soil Conservation practices

    NASA Astrophysics Data System (ADS)

    Wildemeersch, Jasmien C. J.; Garba, Maman; Al-Barri, Bashar; Sabiou, Mahamane; Cornelis, Wim M.

    2015-04-01

    As a result of growing population pressure and severe soil erosion, farmers in the Sahel increasingly rely on degraded lands for millet production. The adverse Sahelian rainfall distribution and imbalanced rainfall partitioning over the rootzone of these degraded lands therefore calls for sustainable land management strategies that are water resource efficient. This study evaluates the soil-water balance of promising Nigerien Water and Soil Conservation (WSC) techniques (i.e., zaï pits, demi-lune microcatchments and scarification with standing crop residue) and their impact on millet yield by means of an in-situ field experiment (2011-2013) on degraded laterite soil classified as Plinthosol with a 1% slope. All WSC practices received the same amount of fertilizer and were compared to two control practices, one with and one without fertilizer. Soil-water content was recorded with a neutron probe till 105 cm depth and runoff by means of a cemented gutter directing runoff water with a multi-pipe divisor into a collector drum. WSC techniques proved to significantly reduce runoff (blue water) with overall runoff coefficients beings reduced from 25% (control practice) to 5-10%. Consequently, significantly more water was stored inside the catchments of the zaï pits and demi-lunes (green water). With the scarification treatment, no considerable differences in soil-water storage were found with the control. On the other hand, WSC practices had little impact on soil evaporation, which was only 12% of rainfall by the self-mulching soil. Crop transpiration increased with WSC and highest millet yields were found with zaï pits (4 to 5 times higher than under the fertilized control). Although rainwater was better partitioned in case of demi-lune microcatchments resulting in highest amounts of water stored in the soil, yield was only 40-60% of that with zaï pits. This was due to a higher plant density within each demi-lune microcatchment in an attempt to attain similar plant

  13. Twin screw extrusion of kodo millet-chickpea blend: process parameter optimization, physico-chemical and functional properties.

    PubMed

    Geetha, R; Mishra, H N; Srivastav, P P

    2014-11-01

    Kodo millet-chickpea flour blend (70:30) was explored for development of directly expanded snack by twin-screw extrusion. Effect of process parameters like temperature (80-150 °C), screw speed (250-300 rpm) and feeder speed (15-30 rpm) on physical properties (expansion ratio, bulk density, hardness, crispiness) of extrudates were investigated and optimized using response surface methodology. Desirable crispy extrudates were obtained at higher screw speed 293 rpm, lower feeder speed 19 rpm, and medium to high temperature of 123 °C. Effect of extreme and intermediate process conditions on functional, proximate quality and colour of the extrudates were also evaluated.

  14. Antinutritional factor content and hydrochloric acid extractability of minerals in pearl millet cultivars as affected by germination.

    PubMed

    Abdelrahaman, Samia M; Elmaki, Hagir B; Idris, Wisal H; Hassan, Amro B; Babiker, Elfadil E; El Tinay, Abdullahi H

    2007-02-01

    Four pearl millet cultivars of two different species--Kordofani and Ugandi (Pennisetum typhoideum) and Madelkawaya and Shambat (Pennisetum glaucum)--were germinated for 6 days. The germinated grains were dried and milled. Phytic acid and polyphenol contents and hydrochloric acid (HCl) extractability of minerals from the malt flours were determined at intervals of 2 days during germination. Phytic acid and polyphenol contents decreased significantly (P <0.01) with an increase in germination time, with a concomitant increase in HCl extractable minerals. However, the major mineral content was significantly decreased while that of trace minerals was increased with germination time. When the grains were germinated for 6 days, Madelkawaya had higher extractable calcium while Ugandi had higher extractable phosphorus, whereas iron and manganese recorded high levels in Shambat and Madelkawaya, respectively. There was good correlation between antinutritional factors reduction and the increment in extractable minerals with germination time. PMID:17415952

  15. De novo Transcriptome Sequencing to Dissect Candidate Genes Associated with Pearl Millet-Downy Mildew (Sclerospora graminicola Sacc.) Interaction.

    PubMed

    Kulkarni, Kalyani S; Zala, Harshvardhan N; Bosamia, Tejas C; Shukla, Yogesh M; Kumar, Sushil; Fougat, Ranbir S; Patel, Mruduka S; Narayanan, Subhash; Joshi, Chaitanya G

    2016-01-01

    Understanding the plant-pathogen interactions is of utmost importance to design strategies for minimizing the economic deficits caused by pathogens in crops. With an aim to identify genes underlying resistance to downy mildew, a major disease responsible for productivity loss in pearl millet, transcriptome analysis was performed in downy mildew resistant and susceptible genotypes upon infection and control on 454 Roche NGS platform. A total of ~685 Mb data was obtained with 1 575 290 raw reads. The raw reads were pre-processed into high-quality (HQ) reads making to ~82% with an average of 427 bases. The assembly was optimized using four assemblers viz. Newbler, MIRA, CLC and Trinity, out of which MIRA with a total of 14.10 Mb and 90118 transcripts proved to be the best for assembling reads. Differential expression analysis depicted 1396 and 936 and 1000 and 1591 transcripts up and down regulated in resistant inoculated/resistant control and susceptible inoculated/susceptible control respectively with a common of 3644 transcripts. The pathways for secondary metabolism, specifically the phenylpropanoid pathway was up-regulated in resistant genotype. Transcripts up-regulated as a part of defense response included classes of R genes, PR proteins, HR induced proteins and plant hormonal signaling transduction proteins. The transcripts for skp1 protein, purothionin, V type proton ATPase were found to have the highest expression in resistant genotype. Ten transcripts, selected on the basis of their involvement in defense mechanism were validated with qRT-PCR and showed positive co-relation with transcriptome data. Transcriptome analysis evoked potentials of hypersensitive response and systemic acquired resistance as possible mechanism operating in defense mechanism in pearl millet against downy mildew infection. PMID:27446100

  16. Spontaneously fermented millet product as a natural probiotic treatment for diarrhoea in young children: an intervention study in Northern Ghana.

    PubMed

    Lei, Vicki; Friis, Henrik; Michaelsen, Kim Fleischer

    2006-08-01

    Indigenous lactic acid fermented foods may have potential as probiotic treatment for diarrhoea, due to high levels of lactic acid bacteria. In this study the effect of a millet drink, spontaneously fermented by lactic acid bacteria, as a therapeutic agent among Ghanaian children with diarrhoea, was assessed. Children below 5 years of age coming to Northern Ghana health clinics for treatment of diarrhoea were randomised to two groups. Children of both groups received treatment for diarrhoea given at the local clinic. The intervention group in addition received up to 300 ml fermented millet drink (KSW) daily for 5 days after enrolment. The clinical outcome of diarrhoea and reported well-being were registered every day for the 5-day intervention and again 14 days after diagnosis. Among 184 children (mean age 17.4, standard deviation 11.3 months) included, no effects of the intervention were found with respect to stool frequency, stool consistency and duration of diarrhoea. However, KSW was associated with greater reported well-being 14 days after the start of the intervention (P=0.02). The fact that no effect of KSW on diarrhoea was observed could be because many children had a mild form of diarrhoea, and many were treated with antibiotics. Either this could have affected the lactic acid bacteria, or the lactic acid bacteria in KSW had no probiotic effects. It is speculated that the effect after two weeks could be due to a preventing effect of KSW on antibiotic-associated diarrhoea which could help reducing persistent diarrhoea.

  17. De novo Transcriptome Sequencing to Dissect Candidate Genes Associated with Pearl Millet-Downy Mildew (Sclerospora graminicola Sacc.) Interaction

    PubMed Central

    Kulkarni, Kalyani S.; Zala, Harshvardhan N.; Bosamia, Tejas C.; Shukla, Yogesh M.; Kumar, Sushil; Fougat, Ranbir S.; Patel, Mruduka S.; Narayanan, Subhash; Joshi, Chaitanya G.

    2016-01-01

    Understanding the plant-pathogen interactions is of utmost importance to design strategies for minimizing the economic deficits caused by pathogens in crops. With an aim to identify genes underlying resistance to downy mildew, a major disease responsible for productivity loss in pearl millet, transcriptome analysis was performed in downy mildew resistant and susceptible genotypes upon infection and control on 454 Roche NGS platform. A total of ~685 Mb data was obtained with 1 575 290 raw reads. The raw reads were pre-processed into high-quality (HQ) reads making to ~82% with an average of 427 bases. The assembly was optimized using four assemblers viz. Newbler, MIRA, CLC and Trinity, out of which MIRA with a total of 14.10 Mb and 90118 transcripts proved to be the best for assembling reads. Differential expression analysis depicted 1396 and 936 and 1000 and 1591 transcripts up and down regulated in resistant inoculated/resistant control and susceptible inoculated/susceptible control respectively with a common of 3644 transcripts. The pathways for secondary metabolism, specifically the phenylpropanoid pathway was up-regulated in resistant genotype. Transcripts up-regulated as a part of defense response included classes of R genes, PR proteins, HR induced proteins and plant hormonal signaling transduction proteins. The transcripts for skp1 protein, purothionin, V type proton ATPase were found to have the highest expression in resistant genotype. Ten transcripts, selected on the basis of their involvement in defense mechanism were validated with qRT-PCR and showed positive co-relation with transcriptome data. Transcriptome analysis evoked potentials of hypersensitive response and systemic acquired resistance as possible mechanism operating in defense mechanism in pearl millet against downy mildew infection. PMID:27446100

  18. The synergistic effect of drought and light stresses in sorghum and pearl millet. [Pennisetum glaucum; Sorghum bicolor

    SciTech Connect

    Masojidek, M.; Trivedi, S.; Halshaw, L.; Alexiou, A.; Hall, D.O. )

    1991-05-01

    The effect of drought stress and high irradiance and their combination were studied under laboratory conditions using young plants of a very drought-resistant variety, ICMH 451, of pearl millet (Pennisetum glaucum) and three varieties of sorghum (Sorghum bicolor) - one drought-resistant from India, one drought-tolerant from Texas, and one drought-sensitive variety from France. CO{sub 2} assimilation rates and photosystem II fluorescence in leaves were analyzed in parallel with photosynthetic electron transport, photosystem II fluorescence, and chlorophyll-protein composition in chloroplasts isolated from these leaves. High irradiance slightly increased CO{sub 2} assimilation rates and electron transport activities of irrigated plants but not fluorescence. Drought stress (less than {minus}1 megapascal) depressed CO{sub 2} assimilation rates, fluorescence, and electron transport. Under the combined effect of drought stress and high irradiance, CO{sub 2} assimilation rates, fluorescence, and electron transport. Under the combined effects of drought stress and high irradiance, CO{sub 2} assimilation rates and fluorescence were severely inhibited in leaves, as were the photosynthetic electron transport. Under the combined effects of drought stress and high irradiance, CO{sub 2} assimilation rates and fluorescence were severely inhibited in leaves, as were the photosynthetic electron transport activities and fluorescence in chloroplasts (but not photosystem I activity). The synergistic or distinctive effect of drought and high irradiance is discussed. The experiments with pearl millet and three varieties of sorghum showed that different responses of plants to drought and light stresses can be monitored by plant physiological and biochemical techniques. Some of these techniques may have a potential for selection of stress-resistant varieties using seedlings.

  19. Replacing corn silage with different forage millet silage cultivars: effects on milk yield, nutrient digestion, and ruminal fermentation of lactating dairy cows.

    PubMed

    Brunette, T; Baurhoo, B; Mustafa, A F

    2014-10-01

    This study investigated the effects of dietary replacement of corn silage (CS) with 2 cultivars of forage millet silages [i.e., regular millet (RM) and sweet millet (SM)] on milk production, apparent total-tract digestibility, and ruminal fermentation characteristics of dairy cows. Fifteen lactating Holstein cows were used in a replicated 3 × 3 Latin square experiment and fed (ad libitum) a high-forage total mixed ration (68:32 forage:concentrate ratio). Dietary treatments included CS (control), RM, and SM diets. Experimental silages constituted 37% of each diet DM. Three ruminally fistulated cows were used to determine the effect of dietary treatments on ruminal fermentation and total-tract nutrient utilization. Relative to CS, RM and SM silages contained 36% more crude protein, 66% more neutral detergent fiber (NDF), and 88% more acid detergent fiber. Cows fed CS consumed more dry matter (DM; 24.4 vs. 22.7 kg/d) and starch (5.7 vs. 3.7 kg/d), but less NDF (7.9 vs. 8.7 kg/d) than cows fed RM or SM. However, DM, starch and NDF intakes were not different between forage millet silage types. Feeding RM relative to CS reduced milk yield (32.7 vs. 35.2 kg/d), energy-corrected milk (35.8 vs. 38.0 kg/d) and SCM (32.7 vs. 35.3 kg/d). However, cows fed SM had similar milk, energy-corrected milk, and solids-corrected milk yields than cows fed CS or RM. Milk efficiency was not affected by dietary treatments. Milk protein concentration was greatest for cows fed CS, intermediate for cows fed SM, and lowest for cows fed RM. Milk concentration of solids-not-fat was lesser, whereas milk urea nitrogen was greater for cows fed RM than for those fed CS. However, millet silage type had no effect on milk solids-not-fat and milk urea nitrogen levels. Concentrations of milk fat, lactose and total solids were not affected by silage type. Ruminal pH and ruminal NH3-N were greater for cows fed RM and SM than for cows fed CS. Total-tract digestibility of DM (average=67.9%), NDF (average=53

  20. Association analysis of SSR markers with phenology, grain, and Stover-yield related traits in pearl millet (Pennisetum glaucum (L.) R. Br.).

    PubMed

    Kannan, Baskaran; Senapathy, Senthilvel; Bhasker Raj, Arcot Gajaraj; Chandra, Subhash; Muthiah, Arunachalam; Dhanapal, Arun Prabhu; Hash, Charles Thomas

    2014-01-01

    Pearl millet is a staple food crop for millions of people living in the arid and semi-arid tropics. Molecular markers have been used to identify genomic regions linked to traits of interest by conventional QTL mapping and association analysis. Phenotypic recurrent selection is known to increase frequencies of favorable alleles and decrease those unfavorable for the traits under selection. This study was undertaken (i) to quantify the response to recurrent selection for phenotypic traits during breeding of the pearl millet open-pollinated cultivar "CO (Cu) 9" and its four immediate progenitor populations and (ii) to assess the ability of simple sequence repeat (SSR) marker alleles to identify genomic regions linked to grain and stover yield-related traits in these populations by association analysis. A total of 159 SSR alleles were detected across 34 selected single-copy SSR loci. SSR marker data revealed presence of subpopulations. Association analysis identified genomic regions associated with flowering time located on linkage group (LG) 6 and plant height on LG4, LG6, and LG7. Marker alleles on LG6 were associated with stover yield, and those on LG7 were associated with grain yield. Findings of this study would give an opportunity to develop marker-assisted recurrent selection (MARS) or marker-assisted population improvement (MAPI) strategies to increase the rate of gain for pearl millet populations undergoing recurrent selection.

  1. Association analysis of SSR markers with phenology, grain, and Stover-yield related traits in pearl millet (Pennisetum glaucum (L.) R. Br.).

    PubMed

    Kannan, Baskaran; Senapathy, Senthilvel; Bhasker Raj, Arcot Gajaraj; Chandra, Subhash; Muthiah, Arunachalam; Dhanapal, Arun Prabhu; Hash, Charles Thomas

    2014-01-01

    Pearl millet is a staple food crop for millions of people living in the arid and semi-arid tropics. Molecular markers have been used to identify genomic regions linked to traits of interest by conventional QTL mapping and association analysis. Phenotypic recurrent selection is known to increase frequencies of favorable alleles and decrease those unfavorable for the traits under selection. This study was undertaken (i) to quantify the response to recurrent selection for phenotypic traits during breeding of the pearl millet open-pollinated cultivar "CO (Cu) 9" and its four immediate progenitor populations and (ii) to assess the ability of simple sequence repeat (SSR) marker alleles to identify genomic regions linked to grain and stover yield-related traits in these populations by association analysis. A total of 159 SSR alleles were detected across 34 selected single-copy SSR loci. SSR marker data revealed presence of subpopulations. Association analysis identified genomic regions associated with flowering time located on linkage group (LG) 6 and plant height on LG4, LG6, and LG7. Marker alleles on LG6 were associated with stover yield, and those on LG7 were associated with grain yield. Findings of this study would give an opportunity to develop marker-assisted recurrent selection (MARS) or marker-assisted population improvement (MAPI) strategies to increase the rate of gain for pearl millet populations undergoing recurrent selection. PMID:24526909

  2. Foxtail Millet NF-Y Families: Genome-Wide Survey and Evolution Analyses Identified Two Functional Genes Important in Abiotic Stresses.

    PubMed

    Feng, Zhi-Juan; He, Guan-Hua; Zheng, Wei-Jun; Lu, Pan-Pan; Chen, Ming; Gong, Ya-Ming; Ma, You-Zhi; Xu, Zhao-Shi

    2015-01-01

    It was reported that Nuclear Factor Y (NF-Y) genes were involved in abiotic stress in plants. Foxtail millet (Setaria italica), an elite stress tolerant crop, provided an impetus for the investigation of the NF-Y families in abiotic responses. In the present study, a total of 39 NF-Y genes were identified in foxtail millet. Synteny analyses suggested that foxtail millet NF-Y genes had experienced rapid expansion and strong purifying selection during the process of plant evolution. De novo transcriptome assembly of foxtail millet revealed 11 drought up-regulated NF-Y genes. SiNF-YA1 and SiNF-YB8 were highly activated in leaves and/or roots by drought and salt stresses. Abscisic acid (ABA) and H2O2 played positive roles in the induction of SiNF-YA1 and SiNF-YB8 under stress treatments. Transient luciferase (LUC) expression assays revealed that SiNF-YA1 and SiNF-YB8 could activate the LUC gene driven by the tobacco (Nicotiana tobacam) NtERD10, NtLEA5, NtCAT, NtSOD, or NtPOD promoter under normal or stress conditions. Overexpression of SiNF-YA1 enhanced drought and salt tolerance by activating stress-related genes NtERD10 and NtCAT1 and by maintaining relatively stable relative water content (RWC) and contents of chlorophyll, superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and malondialdehyde (MDA) in transgenic lines under stresses. SiNF-YB8 regulated expression of NtSOD, NtPOD, NtLEA5, and NtERD10 and conferred relatively high RWC and chlorophyll contents and low MDA content, resulting in drought and osmotic tolerance in transgenic lines under stresses. Therefore, SiNF-YA1 and SiNF-YB8 could activate stress-related genes and improve physiological traits, resulting in tolerance to abiotic stresses in plants. All these results will facilitate functional characterization of foxtail millet NF-Ys in future studies. PMID:26734043

  3. Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci

    PubMed Central

    2012-01-01

    Background Identification of genes underlying drought tolerance (DT) quantitative trait loci (QTLs) will facilitate understanding of molecular mechanisms of drought tolerance, and also will accelerate genetic improvement of pearl millet through marker-assisted selection. We report a map based on genes with assigned functional roles in plant adaptation to drought and other abiotic stresses and demonstrate its use in identifying candidate genes underlying a major DT-QTL. Results Seventy five single nucleotide polymorphism (SNP) and conserved intron spanning primer (CISP) markers were developed from available expressed sequence tags (ESTs) using four genotypes, H 77/833-2, PRLT 2/89-33, ICMR 01029 and ICMR 01004, representing parents of two mapping populations. A total of 228 SNPs were obtained from 30.5 kb sequenced region resulting in a SNP frequency of 1/134 bp. The positions of major pearl millet linkage group (LG) 2 DT-QTLs (reported from crosses H 77/833-2 × PRLT 2/89-33 and 841B × 863B) were added to the present consensus function map which identified 18 genes, coding for PSI reaction center subunit III, PHYC, actin, alanine glyoxylate aminotransferase, uridylate kinase, acyl-CoA oxidase, dipeptidyl peptidase IV, MADS-box, serine/threonine protein kinase, ubiquitin conjugating enzyme, zinc finger C- × 8-C × 5-C × 3-H type, Hd3, acetyl CoA carboxylase, chlorophyll a/b binding protein, photolyase, protein phosphatase1 regulatory subunit SDS22 and two hypothetical proteins, co-mapping in this DT-QTL interval. Many of these candidate genes were found to have significant association with QTLs of grain yield, flowering time and leaf rolling under drought stress conditions. Conclusions We have exploited available pearl millet EST sequences to generate a mapped resource of seventy five new gene-based markers for pearl millet and demonstrated its use in identifying candidate genes underlying a major DT-QTL in this species. The reported gene-based markers represent

  4. Foxtail Millet NF-Y Families: Genome-Wide Survey and Evolution Analyses Identified Two Functional Genes Important in Abiotic Stresses

    PubMed Central

    Feng, Zhi-Juan; He, Guan-Hua; Zheng, Wei-Jun; Lu, Pan-Pan; Chen, Ming; Gong, Ya-Ming; Ma, You-Zhi; Xu, Zhao-Shi

    2015-01-01

    It was reported that Nuclear Factor Y (NF-Y) genes were involved in abiotic stress in plants. Foxtail millet (Setaria italica), an elite stress tolerant crop, provided an impetus for the investigation of the NF-Y families in abiotic responses. In the present study, a total of 39 NF-Y genes were identified in foxtail millet. Synteny analyses suggested that foxtail millet NF-Y genes had experienced rapid expansion and strong purifying selection during the process of plant evolution. De novo transcriptome assembly of foxtail millet revealed 11 drought up-regulated NF-Y genes. SiNF-YA1 and SiNF-YB8 were highly activated in leaves and/or roots by drought and salt stresses. Abscisic acid (ABA) and H2O2 played positive roles in the induction of SiNF-YA1 and SiNF-YB8 under stress treatments. Transient luciferase (LUC) expression assays revealed that SiNF-YA1 and SiNF-YB8 could activate the LUC gene driven by the tobacco (Nicotiana tobacam) NtERD10, NtLEA5, NtCAT, NtSOD, or NtPOD promoter under normal or stress conditions. Overexpression of SiNF-YA1 enhanced drought and salt tolerance by activating stress-related genes NtERD10 and NtCAT1 and by maintaining relatively stable relative water content (RWC) and contents of chlorophyll, superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and malondialdehyde (MDA) in transgenic lines under stresses. SiNF-YB8 regulated expression of NtSOD, NtPOD, NtLEA5, and NtERD10 and conferred relatively high RWC and chlorophyll contents and low MDA content, resulting in drought and osmotic tolerance in transgenic lines under stresses. Therefore, SiNF-YA1 and SiNF-YB8 could activate stress-related genes and improve physiological traits, resulting in tolerance to abiotic stresses in plants. All these results will facilitate functional characterization of foxtail millet NF-Ys in future studies. PMID:26734043

  5. Photosynthesis in Grass Species Differing in Carbon Dioxide Fixation Pathways: III. OXYGEN RESPONSE AND ENZYME ACTIVITIES OF SPECIES IN THE LAXA GROUP OF PANICUM.

    PubMed

    Morgan, J A; Brown, R H

    1980-01-01

    Measurements of CO(2) exchange at varying O(2) concentrations in seven grass species of the Laxa group of Panicum and activities of five photosynthetic enzymes were compared to values obtained for these characters in a cool season C(3) grass, tall fescue (Festuca arundinacea Schreb.) and a C(4) grass, P. maximum Jacq. Plants were divided into three groups on the basis of the inhibition of apparent photosynthesis by 21% O(2.) Rates of apparent photosynthesis in P. prionitis Griseb. and P. maximum were virtually unaffected by changes in O(2) concentration. In another group consisting of P. hylaeicum Mez., P. rivulare Trin., P. laxum Sw., and tall fescue apparent photosynthesis was inhibited by 28.2 to 36.0% at 21% O(2.) An intermediate inhibition of 20.6 to 23.3% at 21% O(2) was exhibited by P. milioides Nees ex Trin., P. schenckii Hack., and P. decipiens Nees ex Trin. The CO(2) compensation concentration for P. prionitis and P. maximum was low (Panicums. However, estimates of photorespiration in the intermediate species were low and changed little with O(2) in comparison to estimates for the C(3) species which were higher and increased greatly with increased O(2.)Activities of phosphoenolpyruvate carboxylase were greatest in P. maximum and P. prionitis and one-fourth or less in the remaining species. Activity of ribulose bisphosphate carboxylase was 548 micromoles per mg chlorophyll per hour in tall fescue; activity in the remaining species was approximately one-fourth or less of that in tall fescue, with the exception of P. rivulare, in which it was

  6. Comparative Analysis of End Point Enzymatic Digests of Arabino-Xylan Isolated from Switchgrass (Panicum virgatum L) of Varying Maturities using LC-MSn †

    PubMed Central

    Bowman, Michael J.; Dien, Bruce S.; O’Bryan, Patricia J.; Sarath, Gautam; Cotta, Michael A.

    2012-01-01

    Switchgrass (Panicum virgatum L., SG) is a perennial grass presently used for forage and being developed as a bioenergy crop for conversion of cell wall carbohydrates to biofuels. Up to 50% of the cell wall associated carbohydrates are xylan. SG was analyzed for xylan structural features at variable harvest maturities. Xylan from each of three maturities was isolated using classical alkaline extraction to yield fractions (Xyl A and B) with varying compositional ratios. The Xyl B fraction was observed to decrease with plant age. Xylan samples were subsequently prepared for structure analysis by digesting with pure endo-xylanase, which preserved side-groups, or a commercial carbohydrase preparation favored for biomass conversion work. Enzymatic digestion products were successfully permethylated and analyzed by reverse-phase liquid chromatography with mass spectrometric detection (RP-HPLC-MSn). This method is advantageous compared to prior work on plant biomass because it avoids isolation of individual arabinoxylan oligomers. The use of RP-HPLC- MSn differentiated 14 structural oligosaccharides (d.p. 3–9) from the monocomponent enzyme digestion and nine oligosaccharide structures (d.p. 3–9) from hydrolysis with a cellulase enzyme cocktail. The distribution of arabinoxylan oligomers varied depending upon the enzyme(s) applied but did not vary with harvest maturity. PMID:24957770

  7. Intake and Performance of Yearling Steers Grazing Guineagrass (Panicum maximum cv. Tanzânia) Pasture Supplemented with Different Energy Sources

    PubMed Central

    Santana, M. C. A.; Euclides, V. B. P.; Mancio, A. B.; Medeiros, S. R.; Costa, J. A. R.; Oliveira, R. L.

    2013-01-01

    The aim of this study was to evaluate the efficiency of supplements containing different energy sources in relation to mineral supplementation of steers grazing guineagrass (Panicum maximum cv Tanzânia) pasture, during the dry season. The experimental design was a randomized block with three treatments and four replications. The treatments consisted of a mineral supplementation and two other supplements, one based on corn seed and the other based on soybean hulls, and provided at 0.8% of body weight. Forty-eight, 12 month-old crossbred steers with an average initial body weight of 267 kg, were assigned to twelve paddocks (1,125 ha) of guineagrass. The animals that were fed with soybean hulls and corn seed presented a greater average daily gain (0.982 and 0.937) when compared with the mineral supplementation. Soybean hulls can be used as a satisfactory food source, replacing corn as an energy source in the supplementation of beef cattle without compromising animal performance. PMID:25049797

  8. De novo assembly and transcriptome analysis of two contrary tillering mutants to learn the mechanisms of tillers outgrowth in switchgrass (Panicum virgatum L.)

    PubMed Central

    Xu, Kaijie; Sun, Fengli; Chai, Guaiqiang; Wang, Yongfeng; Shi, Lili; Liu, Shudong; Xi, Yajun

    2015-01-01

    Tillering is an important trait in monocotyledon plants. The switchgrass (Panicum virgatum), studied usually as a source of biomass for energy production, can produce hundreds of tillers in its lifetime. Studying the tillering of switchgrass also provides information for other monocot crops. High-tillering and low-tillering mutants were produced by ethyl methanesulfonate mutagenesis. Alteration of tillering ability resulted from different tiller buds outgrowth in the two mutants. We sequenced the tiller buds transcriptomes of high-tillering and low-tillering plants using next-generation sequencing technology, and generated 34 G data in total. In the de novo assembly results, 133,828 unigenes were detected with an average length of 1,238 bp, and 5,290 unigenes were differentially expressed between the two mutants, including 3,225 up-regulated genes and 2,065 down-regulated genes. Differentially expressed gene analysis with functional annotations was performed to identify candidate genes involved in tiller bud outgrowth processes using Gene Ontology classification, Cluster of Orthologous Groups of proteins, and Kyoto Encyclopedia of Genes and Genomes pathway analysis. This is the first study to explore the tillering transcriptome in two types of tillering mutants by de novo sequencing. PMID:26442062

  9. Arbuscular mycorrhizal fungal diversity associated with Eleocharis obtusa and Panicum capillare growing in an extreme petroleum hydrocarbon-polluted sedimentation basin.

    PubMed

    de la Providencia, Ivan E; Stefani, Franck O P; Labridy, Manuel; St-Arnaud, Marc; Hijri, Mohamed

    2015-06-01

    Arbuscular mycorrhizal fungi (AMF) have been extensively studied in natural and agricultural ecosystems, but little is known about their diversity and community structure in highly petroleum-polluted soils. In this study, we described an unexpected diversity of AMF in a sedimentation basin of a former petrochemical plant, in which petroleum hydrocarbon (PH) wastes were dumped for many decades. We used high-throughput PCR, cloning and sequencing of 18S rDNA to assess the molecular diversity of AMF associated with Eleocharis obtusa and Panicum capillare spontaneously inhabiting extremely PH-contaminated sediments. The analyses of rhizosphere and root samples over two years showed a remarkable AMF richness comparable with that found in temperate natural ecosystems. Twenty-one taxa, encompassing the major families within Glomeromycota, were detected. The most abundant OTUs belong to genera Claroideoglomus, Diversispora, Rhizophagus and Paraglomus. Both plants had very similar overall community structures and OTU abundances; however, AMF community structure differed when comparing the overall OTU distribution across the two years of sampling. This could be likely explained by variations in precipitations between 2011 and 2012. Our study provides the first view of AMF molecular diversity in soils extremely polluted by PH, and demonstrated the ability of AMF to colonize and establish in harsh environments.

  10. Three alpha-amylases from malted finger millet (Ragi, Eleusine coracana, Indaf-15)--purification and partial characterization.

    PubMed

    Nirmala, M; Muralikrishna, G

    2003-01-01

    Three alpha-amylases (E.C. 3.2.1.1) were purified to apparent homogeneity from 72 h finger millet malt by three step purification via fractional acetone precipitation, DEAE-Sephacel ion exchange and Sephacryl S-200 gel permeation chromatographies with a recovery of 6.5, 2.9, 9.6% and fold purification of 26, 17 and 31, respectively. alpha-Nature of these amylases was identified by their ability to rapidly reduce the viscosity of starch solution and also in liberating oligosaccharides of higher D.P. and were accordingly designated as amylases alpha-1((b)), alpha-2 and alpha-3, respectively. These amylases, having a molecular weight of 45+/-2 kDa were found to be monomeric. The pH and temperature optima of these alpha-amylases were found to be in the range of 5.0-5.5 and 45-50 degrees C, respectively. K(m) values of these amylases for various cereal starches varied between 0.59 and 1.43%. Carbodiimide (50 mM) and metal ions such as Al(3+), Fe(2+), and Hg(2+) (5 mM) have completely inhibited these enzymes at 45 degrees C. Amino acid analysis of these enzymes indicated high amounts of glycine which is an unusual feature of these enzymes.

  11. Production of α-Amylase by Aspergillus terreus NCFT 4269.10 Using Pearl Millet and Its Structural Characterization.

    PubMed

    Sethi, Bijay K; Jana, Arijit; Nanda, Prativa K; DasMohapatra, Pradeep K; Sahoo, Santi L; Patra, Jayanta Kumar

    2016-01-01

    In this investigation, Aspergillus terreus NCFT4269.10 was employed in liquid static surface (LSSF) and solid state (SSF) fermentation to assess the optimal conditions for α-amylase biosynthesis. One-variable-at-a-time approach (quasi-optimum protocol) was primarily used to investigate the effect of each parameter on production of amylase. The maximum amylase production was achieved using pearl millet (PM) as substrate by SSF (19.19 ± 0.9 Ug(-1)) and also in presence of 1 mM magnesium sulfate, 0.025% (w/v) gibberellic acid, and 30 mg/100 ml (w/v) of vitamin E (~60-fold higher production of amylase) with the initial medium pH of 7.0 and incubation at 30 °C for 96 h. In addition, maltose, gelatin and isoleucine also influenced the α-amylase production. Amylase was purified to homogeneity with molecular mass around 15.3 kDa. The enzyme comprised of a typical secondary structure containing α-helix (12.2%), β-pleated sheet (23.6%), and β-turn (27.4%). Exploitation of PM for α-amylase production with better downstream makes it the unique enzyme for various biotechnological applications. PMID:27242841

  12. Soft computing modelling of moisture sorption isotherms of milk-foxtail millet powder and determination of thermodynamic properties.

    PubMed

    Simha, H V Vikram; Pushpadass, Heartwin A; Franklin, Magdaline Eljeeva Emerald; Kumar, P Arun; Manimala, K

    2016-06-01

    Moisture sorption isotherms of spray-dried milk-foxtail millet powder were determined at 10, 25 and 40 °C. Sorption data was fitted using classical and soft-computing approaches. The isotherms were of type II, and equilibrium moisture content (EMC) was temperature dependent. The BET monolayer moisture content decreased from 3.30 to 2.67 % as temperature increased from 10 to 40 °C. Amongst the classical models, Ferro-Fontan gave the best fit of EMC-aw data. However, the Sugeno-type adaptive neuro-fuzzy inference system (ANFIS) with generalized bell-shaped membership function performed better than artificial neural network and classical models with RMSE as low as 0.0099. The isosteric heat of sorption decreased from 150.32 kJ mol(-1) at 1 % moisture content to 44.11 kJ mol(-1) at 15 % moisture. The enthalpy-entropy compensation theory was validated, and the isokinetic and harmonic mean temperatures were determined as 333.1 and 297.5 K, respectively. PMID:27478226

  13. Production of α-Amylase by Aspergillus terreus NCFT 4269.10 Using Pearl Millet and Its Structural Characterization

    PubMed Central

    Sethi, Bijay K.; Jana, Arijit; Nanda, Prativa K.; DasMohapatra, Pradeep K.; Sahoo, Santi L.; Patra, Jayanta Kumar

    2016-01-01

    In this investigation, Aspergillus terreus NCFT4269.10 was employed in liquid static surface (LSSF) and solid state (SSF) fermentation to assess the optimal conditions for α-amylase biosynthesis. One-variable-at-a-time approach (quasi-optimum protocol) was primarily used to investigate the effect of each parameter on production of amylase. The maximum amylase production was achieved using pearl millet (PM) as substrate by SSF (19.19 ± 0.9 Ug−1) and also in presence of 1 mM magnesium sulfate, 0.025% (w/v) gibberellic acid, and 30 mg/100 ml (w/v) of vitamin E (~60-fold higher production of amylase) with the initial medium pH of 7.0 and incubation at 30 °C for 96 h. In addition, maltose, gelatin and isoleucine also influenced the α-amylase production. Amylase was purified to homogeneity with molecular mass around 15.3 kDa. The enzyme comprised of a typical secondary structure containing α-helix (12.2%), β-pleated sheet (23.6%), and β-turn (27.4%). Exploitation of PM for α-amylase production with better downstream makes it the unique enzyme for various biotechnological applications. PMID:27242841

  14. DEVELOPMENT OF GENOMIC AND GENETIC TOOLS FOR FOXTAIL MILLET, AND USE OF THESE TOOLS IN THE IMPROVEMENT OF BIOMASS PRODUCTION FOR BIOENERGY CROPS

    SciTech Connect

    Chen, Xinlu; Zale, Janice; Chen, Feng

    2013-01-22

    Foxtail millet (Setaria italica L.) is a warm-season, C4 annual crop commonly grown for grain and forage worldwide. It has a relatively short generation time, yet produces hundreds of seeds per inflorescence. The crop is inbred and it has a small-size genome (~500 Mb). These features make foxtail millet an attractive grass model, especially for bioenergy crops. While a number of genomic tools have been established for foxtail millet, including a fully sequenced genome and molecular markers, the objectives of this project were to develop a tissue culture system, determine the best explant(s) for tissue culture, optimize transient gene expression, and establish a stable transformation system for foxtail millet cultivar Yugu1. In optimizing a tissue culture medium for the induction of calli and somatic embryos from immature inflorescences and mature seed explants, Murashige and Skoog medium containing 2.5 mg l-1 2,4-dichlorophenoxyacetic acid and 0.6 mg l-1 6- benzylaminopurine was determined to be optimal for callus induction of foxtail millet. The efficiency of callus induction from explants of immature inflorescences was significantly higher at 76% compared to that of callus induction from mature seed explants at 68%. The calli induced from this medium were regenerated into plants at high frequency (~100%) using 0.2 mg l-1 kinetin in the regeneration media. For performing transient gene expression, immature embryos were first isolated from inflorescences. Transient expression of the GUS reporter gene in immature embryos was significantly increased after sonication, a vacuum treatment, centrifugation and the addition of L-cysteine and dithiothreitol, which led to the efficiency of transient expression at levels greater than 70% after Agrobacterium inoculation. Inoculation with Agrobacterium was also tested with germinated seeds. The radicals of germinated seeds were pierced with needles and dipped into Agrobacterium solution. This method achieved a 10% transient

  15. Enhancement of downy mildew disease resistance in pearl millet by the G_app7 bioactive compound produced by Ganoderma applanatum.

    PubMed

    Jogaiah, Sudisha; Shetty, Hunthrike Shekar; Ito, Shin-Ichi; Tran, Lam-Son Phan

    2016-08-01

    Pearl millet (Pennisetum glaucum) stands sixth among the most important cereal crops grown in the semi-arid and arid regions of the world. The downy mildew disease caused by Sclerospora graminicola, an oomycete pathogen, has been recognized as a major biotic constraint in pearl millet production. On the other hand, basidiomycetes are known to produce a large number of antimicrobial metabolites, providing a good source of anti-oomycete agrochemicals. Here, we report the discovery and efficacy of a compound, named G_app7, purified from Ganoderma applanatum on inhibition of growth and development of S. graminicola, as well as the effects of seed treatment with G_app7 on protection of pearl millet from downy mildew. G_app7 consistently demonstrated remarkable effects against S. graminicola by recording significant inhibition of sporangium formation (41.4%), zoospore release (77.5%) and zoospore motility (91%). Analyses of G_app7 compound using two-dimensional nuclear magnetic resonance spectroscopy and liquid chromatography-mass spectrometry revealed its close resemblance to metominostrobin, a derivative of strobilurin group of fungicides. Furthermore, the G_app7 was shown to stably maintain the inhibitory effects at different temperatures between 25 and 80 °C. In addition, the anti-oomycete activity of G_app7 was fairly stable for a period of at least 12 months at 4 °C and was only completely lost after being autoclaved. Seed treatment with G_app7 resulted in a significant increase in disease protection (63%) under greenhouse conditions compared with water control. The identification and isolation of this novel and functional anti-oomycete compound from G. applanatum provide a considerable agrochemical importance for plant protection against downy mildew in an environmentally safe and economical manner. PMID:27093114

  16. Genetic diversity and population differentiation of traditional fonio millet (Digitaria spp.) landraces from different agro-ecological zones of West Africa.

    PubMed

    Adoukonou-Sagbadja, H; Wagner, C; Dansi, A; Ahlemeyer, J; Daïnou, O; Akpagana, K; Ordon, F; Friedt, W

    2007-11-01

    Fonio millets (Digitaria exilis Stapf, D. iburua Stapf) are valuable indigenous staple food crops in West Africa. In order to investigate the genetic diversity and population differentiation in these millets, a total of 122 accessions from five countries (Benin, Burkina Faso, Guinea, Mali and Togo) were analysed by Amplified Fragment Length Polymorphisms (AFLPs). Genetic distance-based UPGMA clustering and principal coordinate analysis revealed a clear-cut differentiation between the two species and a clustering of D. exilis accessions in three major genetic groups fitting to their geographical origins. Shannon's diversity index detected in D. iburua was low (H = 0.02). In D. exilis, the most widespread cultivated species, moderate levels of genetic diversity (Shannon's diversity H = 0.267; Nei's gene diversity H' = 0.355) were detected. This genetic diversity is unequally distributed with the essential part observed in the Upper Niger River basin while a very low diversity is present in the Atacora mountain zone. Analysis of molecular variance (AMOVA) revealed that a large part of the genetic variation resides among the genetic groups (70%) and the country of origin (56%), indicating a clear genetic differentiation within D. exilis. Influence of mating system (inbreeding or apomixis), agricultural selection and ecological adaptations as well as founding effects in the genetic make-up of the landraces were visible and seemed to jointly contribute to the genetic structure detected in this species. The genetic variability found between the analysed accessions was weakly correlated with their phenotypic attributes. However, the genetic groups identified differed significantly in their mean performance for some agro-morphologic traits. The results obtained are relevant for fonio millets breeding, conservation and management of their genetic resources in West Africa.

  17. Molecular cloning of a coiled-coil-nucleotide-binding-site-leucine-rich repeat gene from pearl millet and its expression pattern in response to the downy mildew pathogen.

    PubMed

    Veena, Mariswamy; Melvin, Prasad; Prabhu, Sreedhara Ashok; Shailasree, Sekhar; Shetty, Hunthrike Shekar; Kini, Kukkundoor Ramachandra

    2016-03-01

    Downy mildew caused by Sclerospora graminicola is a devastating disease of pearl millet. Based on candidate gene approach, a set of 22 resistance gene analogues were identified. The clone RGPM 301 (AY117410) containing a partial sequence shared 83% similarity to rice R-proteins. A full-length R-gene RGA RGPM 301 of 3552 bp with 2979 bp open reading frame encoding 992 amino acids was isolated by the degenerate primers and rapid amplification of cDNA ends polymerase chain reaction (RACE-PCR) approach. It had a molecular mass of 113.96 kDa and isoelectric point (pI) of 8.71. The sequence alignment and phylogenetic analysis grouped it to a non-TIR NBS LRR group. The quantitative real-time PCR (qRT-PCR) analysis revealed higher accumulation of the transcripts following inoculation with S. graminicola in the resistant cultivar (IP18296) compared to susceptible cultivar (7042S). Further, significant induction in the transcript levels were observed when treated with abiotic elicitor β-aminobutyric acid (BABA) and biotic elicitor Pseudomonas fluorescens. Exogenous application of phytohormones jasmonic acid or salicylic acid also up-regulated the expression levels of RGA RGPM 301. The treatment of cultivar IP18296 with mitogen-activated protein kinase (MPK) inhibitors (PD98059 and U0126) suppressed the levels of RGA RGPM 301. A 3.5 kb RGA RGPM 301 which is a non-TIR NBS-LRR protein was isolated from pearl millet and its up-regulation during downy mildew interaction was demonstrated by qRT-PCR. These studies indicate a role for this RGA in pearl millet downy mildew interaction.

  18. Phosphate Concentration and Arbuscular Mycorrhizal Colonisation Influence the Growth, Yield and Expression of Twelve PHT1 Family Phosphate Transporters in Foxtail Millet (Setaria italica)

    PubMed Central

    Ceasar, S. Antony; Hodge, Angela; Baker, Alison; Baldwin, Stephen A.

    2014-01-01

    Phosphorus (P) is an essential element which plays several key roles in all living organisms. Setaria italica (foxtail millet) is a model species for panacoid grasses including several millet species widely grown in arid regions of Asia and Africa, and for the bioenergy crop switchgrass. The growth responses of S. italica to different levels of inorganic phosphate (Pi) and to colonisation with the arbuscular mycorrhizal fungus Funneliformis mosseae (syn. Glomus mosseae) were studied. Phosphate is taken up from the environment by the PHT1 family of plant phosphate transporters, which have been well characterized in several plant species. Bioinformatic analysis identified 12 members of the PHT1 gene family (SiPHT1;1-1;12) in S. italica, and RT and qPCR analysis showed that most of these transporters displayed specific expression patterns with respect to tissue, phosphate status and arbuscular mycorrhizal colonisation. SiPHT1;2 was found to be expressed in all tissues and in all growth conditions tested. In contrast, expression of SiPHT1;4 was induced in roots after 15 days growth in hydroponic medium of low Pi concentration. Expression of SiPHT1;8 and SiPHT1;9 in roots was selectively induced by colonisation with F. mosseae. SiPHT1;3 and SiPHT1;4 were found to be predominantly expressed in leaf and root tissues respectively. Several other transporters were expressed in shoots and leaves during growth in low Pi concentrations. This study will form the basis for the further characterization of these transporters, with the long term goal of improving the phosphate use efficiency of foxtail millet. PMID:25251671

  19. Tissue-specific genome instability in synthetic interspecific hybrids of Pennisetum purpureum (Napier grass) and Pennisetum glaucum (pearl millet) is caused by micronucleation.

    PubMed

    Dos Reis, Gabriela Barreto; Ishii, Takayoshi; Fuchs, Joerg; Houben, Andreas; Davide, Lisete Chamma

    2016-09-01

    Genome instability is observed in several species hybrids. We studied the mechanisms underlying the genome instability in hexaploid hybrids of Napier grass (Pennisetum purpureum R.) and pearl millet (Pennisetum glaucum L.) using a combination of different methods. Chromosomes of both parental genomes are lost by micronucleation. Our analysis suggests that genome instability occurs preferentially in meristematic root tissue of hexaploid hybrids, and chromosome elimination is not only caused by centromere inactivation. Likely, beside centromere dysfunction, unrepaired DNA double-strand breaks result in fragmented chromosomes in synthetic hybrids.

  20. A somaclonal line SE7 of finger millet (Eleusine coracana) exhibits modified cytokinin homeostasis and increased grain yield

    PubMed Central

    Radchuk, Volodymyr

    2012-01-01

    The SE7 somaclonal line of finger millet (Eleusine coracana) achieved increased grain yield in field trials that apparently resulted from a higher number of inflorescences and seeds per plant, compared with the wild type. Levels of endogenous cytokinins, especially those of highly physiologically active iso-pentenyl adenine, were increased during early inflorescence development in SE7 plants. Transcript levels of cytokinin-degrading enzymes but not of a cytokinin-synthesizing enzyme were also decreased in young leaves, seedlings, and initiating inflorescences of SE7. These data suggest that attenuated degradation of cytokinins in SE7 inflorescences leads to higher cytokinin levels that stimulate meristem activity and result in production of more inflorescences. Gene expression was compared between SE7 and wild-type young inflorescences using the barley 12K cDNA array. The largest fraction of up-regulated genes in SE7 was related to transcription, translation, and cell proliferation, cell wall assembly/biosynthesis, and to growth regulation of young and meristematic tissues including floral formation. Other up-regulated genes were associated with protein and lipid degradation and mitochondrial energy production. Down-regulated genes were related to pathogen defence and stress response, primary metabolism, glycolysis, and the C:N balance. The results indicate a prolonged proliferation phase in SE7 young inflorescences characterized by up-regulated protein synthesis, cytokinesis, floral formation, and energy production. In contrast, wild-type inflorescences are similar to a more differentiated status characterized by regulated protein degradation, cell elongation, and defence/stress responses. It is concluded that attenuated degradation of cytokinins in SE7 inflorescences leads to higher cytokinin levels, which stimulate meristem activity, inflorescence formation, and seed set. PMID:22888132

  1. Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

    PubMed Central

    Evans, Joseph; Kim, Jeongwoon; Childs, Kevin L; Vaillancourt, Brieanne; Crisovan, Emily; Nandety, Aruna; Gerhardt, Daniel J; Richmond, Todd A; Jeddeloh, Jeffrey A; Kaeppler, Shawn M; Casler, Michael D; Buell, C Robin

    2014-01-01

    Switchgrass (Panicum virgatum) is a polyploid, outcrossing grass species native to North America and has recently been recognized as a potential biofuel feedstock crop. Significant phenotypic variation including ploidy is present across the two primary ecotypes of switchgrass, referred to as upland and lowland switchgrass. The tetraploid switchgrass genome is approximately 1400 Mbp, split between two subgenomes, with significant repetitive sequence content limiting the efficiency of re-sequencing approaches for determining genome diversity. To characterize genetic diversity in upland and lowland switchgrass as a first step in linking genotype to phenotype, we designed an exome capture probe set based on transcript assemblies that represent approximately 50 Mb of annotated switchgrass exome sequences. We then evaluated and optimized the probe set using solid phase comparative genome hybridization and liquid phase exome capture followed by next-generation sequencing. Using the optimized probe set, we assessed variation in the exomes of eight switchgrass genotypes representing tetraploid lowland and octoploid upland cultivars to benchmark our exome capture probe set design. We identified ample variation in the switchgrass genome including 1 395 501 single nucleotide polymorphisms (SNPs), 8173 putative copy number variants and 3336 presence/absence variants. While the majority of the SNPs (84%) detected was bi-allelic, a substantial number was tri-allelic with limited occurrence of tetra-allelic polymorphisms consistent with the heterozygous and polyploid nature of the switchgrass genome. Collectively, these data demonstrate the efficacy of exome capture for discovery of genome variation in a polyploid species with a large, repetitive and heterozygous genome. PMID:24947485

  2. Nutrients intake, performance and nitrogen balance of West African dwarf sheep fed graded levels of toasted Enterolobium cyclocarpum seeds as supplement to Panicum maximum.

    PubMed

    Idowu, O J; Arigbede, O M; Dele, P A; Olanite, J A; Adelusi, O O; Ojo, V O A; Sunmola, A S

    2013-12-01

    A study was conducted to assess the nutritive value of Enterolobium cyclocarpum seeds as supplementary feed for ruminant animals during the dry season when grasses are either not available or of low quality. Matured fruits of E. cyclocarpum were collected, toasted, peeled and then used for the trial. Thirty two West African Dwarf (WAD) sheep aged between 12 +/- 2 months with an average body weight of 10 +/- 2 kg were used in assessing the nutritive value of graded levels of toasted Enterolobium cyclocarpum seed in a concentrate diets as supplement to Panicum maximum basal diet. The percent compositions of the experimental diets were toasted E. cyclocarpum seeds at various levels of inclusion (0, 10, 20 and 30%) for diets 1, 2, 3 and 4. respectively. The diets (1-4) were consecutively fed to each animal at 50 g kg(-1) b.wt. for 12 weeks in a completely randomized design. Parameters taken were weekly body weights, daily feed intake, nutrient utilization and nitrogen balance status for each animal. Diet 2 had the highest significant (p < 0.05) nutrients intake being 871.88, 137.13, 147.59, 33.26 and 69.86 g day(-1) for DM, CP, CF, EE and ASH respectively. The Dry Matter Digestibility (DMD) coefficients decreased significantly (p < 0.05) with increased inclusion levels of toasted E. cyclocarpum seeds supplementation. Sheep fed diet 4 had the lowest feed conversion ratio (8.61) and the highest daily average gain of 58.93 g. However the animals fed Diet 2 had the highest nitrogen retension and converted their feed to flesh.

  3. Photosynthetic responses of a C(3) and three C(4) species of the genus Panicum (s.l.) with different metabolic subtypes to drought stress.

    PubMed

    Alfonso, Sabrina U; Brüggemann, Wolfgang

    2012-09-01

    Young plants of Panicum bisulcatum (C(3)), Zuloagaea bulbosa [NADP-malic enzyme (ME)-C(4)], P. miliaceum (NAD-ME-C(4)) and Urochloa maxima [phosphoenolpyruvate carboxykinase (PCK)-C(4)] were subjected to drought stress (DS) in soil for 6 days. The C(3) species showed severe wilting symptoms at higher soil water potential (-1.1 MPa) and relative leaf water content (77 %) than in the case of the C(4) species (-1.5 to -1.7 MPa; 58-64 %). DS decreased photosynthesis, both under atmospheric and under saturating CO(2). Stomatal limitation of net photosynthesis (P(N)) in the C(3), but not in the C(4) species was indicated by P(N)/C(o) curves. Chlorophyll fluorescence of photosystem II, resulting from different cell types in the four species, indicated NADPH accumulation and non-stomatal limitation of photosynthesis in all four species, even under high CO(2). In the NAD-ME-C(4) and the PCK-C(4) species, DS plants showed increased violaxanthin de-epoxidase rates. Biochemical analyses of carboxylating enzymes and in vitro enzyme activities of the C(4) enzymes identified the most likely non-stomatal limiting steps of photosynthesis. In P. bisulcatum, declining RubisCO content and activity would explain the findings. In Z. bulbosa, all photosynthesis enzymes declined significantly; photosynthesis is probably limited by the turnover rate of the PEPC reaction. In P. miliaceum, all enzyme levels remained fairly constant under DS, but photosynthesis can be limited by feedback inhibition of the Calvin cycle, resulting in asp inhibition of PEPC. In U. maxima, declines of in vivo PEPC activity and feedback inhibition of the Calvin cycle are the main candidates for non-stomatal limitation of photosynthesis under DS.

  4. Discovery of Linear Cyclotides in Monocot Plant Panicum laxum of Poaceae Family Provides New Insights into Evolution and Distribution of Cyclotides in Plants*

    PubMed Central

    Nguyen, Giang Kien Truc; Lian, Yilong; Pang, Edmund Weng Hou; Nguyen, Phuong Quoc Thuc; Tran, Tuan Dinh; Tam, James P.

    2013-01-01

    Cyclotides are disulfide-rich macrocyclic peptides that display a wide range of bioactivities and represent an important group of plant defense peptide biologics. A few linear variants of cyclotides have recently been identified. They share a high sequence homology with cyclotides but are biosynthetically unable to cyclize from their precursors. All hitherto reported cyclotides and their acyclic variants were isolated from dicot plants of the Rubiaceae, Violaceae, Cucurbitaceae, and recently the Fabaceae and Solanaceae families. Although several cyclotide-like genes in the Poaceae family were known from the data mining of the National Center for Biotechnology Information (NCBI) nucleotide database, their expression at the protein level has yet to be proven. Here, we report the discovery and characterization of nine novel linear cyclotides, designated as panitides L1–9, from the Panicum laxum of the Poaceae family and provide the first evidence of linear cyclotides at the protein level in a monocot plant. Disulfide mapping of panitide L3 showed that it possesses a cystine knot arrangement similar to cyclotides. Several panitides were shown to be active against Escherichia coli and cytotoxic to HeLa cells. They also displayed a high stability against heat and proteolytic degradation. Oxidative folding of the disulfide-reduced panitide L1 showed that it can fold efficiently into its native form. The presence of linear cyclotides in both dicots and monocots suggests their ancient origin and existence before the divergence of these two groups of flowering plants. Moreover, the Poaceae family contains many important food crops, and our discovery may open up new avenues of research using cyclotides and their acyclic variants in crop protection. PMID:23195955

  5. Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production

    PubMed Central

    Fu, Chunxiang; Sunkar, Ramanjulu; Zhou, Chuanen; Shen, Hui; Zhang, Ji-Yi; Matts, Jessica; Wolf, Jennifer; Mann, David G J; Stewart, C Neal; Tang, Yuhong; Wang, Zeng-Yu

    2012-01-01

    Switchgrass (Panicum virgatum L.) has been developed into a dedicated herbaceous bioenergy crop. Biomass yield is a major target trait for genetic improvement of switchgrass. microRNAs have emerged as a prominent class of gene regulatory factors that has the potential to improve complex traits such as biomass yield. A miR156b precursor was overexpressed in switchgrass. The effects of miR156 overexpression on SQUAMOSA PROMOTER BINDING PROTEIN LIKE (SPL) genes were revealed by microarray and quantitative RT-PCR analyses. Morphological alterations, biomass yield, saccharification efficiency and forage digestibility of the transgenic plants were characterized. miR156 controls apical dominance and floral transition in switchgrass by suppressing its target SPL genes. Relatively low levels of miR156 overexpression were sufficient to increase biomass yield while producing plants with normal flowering time. Moderate levels of miR156 led to improved biomass but the plants were non-flowering. These two groups of plants produced 58%–101% more biomass yield compared with the control. However, high miR156 levels resulted in severely stunted growth. The degree of morphological alterations of the transgenic switchgrass depends on miR156 level. Compared with floral transition, a lower miR156 level is required to disrupt apical dominance. The improvement in biomass yield was mainly because of the increase in tiller number. Targeted overexpression of miR156 also improved solubilized sugar yield and forage digestibility, and offered an effective approach for transgene containment. PMID:22239253

  6. Genome-wide analysis of heat shock proteins in C4 model, foxtail millet identifies potential candidates for crop improvement under abiotic stress.

    PubMed

    Singh, Roshan Kumar; Jaishankar, Jananee; Muthamilarasan, Mehanathan; Shweta, Shweta; Dangi, Anand; Prasad, Manoj

    2016-01-01

    Heat shock proteins (HSPs) perform significant roles in conferring abiotic stress tolerance to crop plants. In view of this, HSPs and their encoding genes were extensively characterized in several plant species; however, understanding their structure, organization, evolution and expression profiling in a naturally stress tolerant crop is necessary to delineate their precise roles in stress-responsive molecular machinery. In this context, the present study has been performed in C4 panicoid model, foxtail millet, which resulted in identification of 20, 9, 27, 20 and 37 genes belonging to SiHSP100, SiHSP90, SiHSP70, SiHSP60 and SisHSP families, respectively. Comprehensive in silico characterization of these genes followed by their expression profiling in response to dehydration, heat, salinity and cold stresses in foxtail millet cultivars contrastingly differing in stress tolerance revealed significant upregulation of several genes in tolerant cultivar. SisHSP-27 showed substantial higher expression in response to heat stress in tolerant cultivar, and its over-expression in yeast system conferred tolerance to several abiotic stresses. Methylation analysis of SiHSP genes suggested that, in susceptible cultivar, higher levels of methylation might be the reason for reduced expression of these genes during stress. Altogether, the study provides novel clues on the role of HSPs in conferring stress tolerance. PMID:27586959

  7. Stable isotopic investigations of modern and charred foxtail millet and the implications for environmental archaeological reconstruction in the western Chinese Loess Plateau

    NASA Astrophysics Data System (ADS)

    An, Cheng-Bang; Dong, Weimiao; Chen, Yufeng; Li, Hu; Shi, Chao; Wang, Wei; Zhang, Pingyu; Zhao, Xueye

    2015-07-01

    Stable isotopic analysis of carbon and nitrogen in human and faunal remains has been widely used to reconstruct prehistoric diets and environmental changes. Isotopic analysis of plant remains allows for a more extensive consideration of paleodiets and can potentially provide information about the environment in which the crops were grown. This paper reports the results of δ13C and δ15N analyses performed on modern and charred archaeological foxtail millet samples collected from the western part of the Chinese Loess Plateau. The δ13C mean value of modern samples is lower than that of ancient samples. There is a significant difference between grain and leaf δ15N values. These results challenge the standard assumption in isotope studies that the nitrogen isotope signals of the different part of plants consumed by humans and animals are the same. The 3-5‰ difference between human and animal δ15N values is always regarded as an indicator of whether human diets contained considerable animal protein. The difference between grain and leaf δ15N values makes this assumption problematic in a foxtail millet-dominated society.

  8. Genome-wide analysis of heat shock proteins in C4 model, foxtail millet identifies potential candidates for crop improvement under abiotic stress

    PubMed Central

    Singh, Roshan Kumar; Jaishankar, Jananee; Muthamilarasan, Mehanathan; Shweta, Shweta; Dangi, Anand; Prasad, Manoj

    2016-01-01

    Heat shock proteins (HSPs) perform significant roles in conferring abiotic stress tolerance to crop plants. In view of this, HSPs and their encoding genes were extensively characterized in several plant species; however, understanding their structure, organization, evolution and expression profiling in a naturally stress tolerant crop is necessary to delineate their precise roles in stress-responsive molecular machinery. In this context, the present study has been performed in C4 panicoid model, foxtail millet, which resulted in identification of 20, 9, 27, 20 and 37 genes belonging to SiHSP100, SiHSP90, SiHSP70, SiHSP60 and SisHSP families, respectively. Comprehensive in silico characterization of these genes followed by their expression profiling in response to dehydration, heat, salinity and cold stresses in foxtail millet cultivars contrastingly differing in stress tolerance revealed significant upregulation of several genes in tolerant cultivar. SisHSP-27 showed substantial higher expression in response to heat stress in tolerant cultivar, and its over-expression in yeast system conferred tolerance to several abiotic stresses. Methylation analysis of SiHSP genes suggested that, in susceptible cultivar, higher levels of methylation might be the reason for reduced expression of these genes during stress. Altogether, the study provides novel clues on the role of HSPs in conferring stress tolerance. PMID:27586959

  9. Ectopic expression of foxtail millet zip-like gene, SiPf40, in transgenic rice plants causes a pleiotropic phenotype affecting tillering, vascular distribution and root development.

    PubMed

    Luan, Yunxia; Wang, Baosheng; Zhao, Qian; Ao, Guangming; Yu, Jingjuan

    2010-12-01

    Plant architecture determines grain production in rice (Oryza sativa) and is affected by important agronomic traits such as tillering, plant height, and panicle morphology. Many key genes involved in controlling the initiation and outgrowth of axillary buds, the elongation of stems, and the architecture of inflorescences have been isolated and analyzed. Previous studies have shown that SiPf40, which was identified from a foxtail millet (Setaria italica) immature seed cDNA library, causes extra branches and tillers in SiPf40-transgenic tobacco and foxtail millet, respectively. To reconfirm its function, we generated transgenic rice plants overexpressing SiPf40 under the control of the ubiquitin promoter. SiPf40-overexpressing transgenic plants have a greater tillering number and a wider tiller angle than wild-type plants. Their root architecture is modified by the promotion of lateral root development, and the distribution of xylem and phloem in the vascular bundle is affected. Analysis of hormone levels showed that the ratios of indole-3-acetic acid/zeatin (IAA/ZR) and IAA/gibberellic acid (IAA/GA) decreased in SiPf40-transgenic plants compared with wild-type plants. These findings strongly suggest that SiPf40 plays an important role in plant architecture.

  10. Finger millet bran supplementation alleviates obesity-induced oxidative stress, inflammation and gut microbial derangements in high-fat diet-fed mice.

    PubMed

    Murtaza, Nida; Baboota, Ritesh K; Jagtap, Sneha; Singh, Dhirendra P; Khare, Pragyanshu; Sarma, Siddhartha M; Podili, Koteswaraiah; Alagesan, Subramanian; Chandra, T S; Bhutani, K K; Boparai, Ravneet K; Bishnoi, Mahendra; Kondepudi, Kanthi Kiran

    2014-11-14

    Several epidemiological studies have shown that the consumption of finger millet (FM) alleviates diabetes-related complications. In the present study, the effect of finger millet whole grain (FM-WG) and bran (FM-BR) supplementation was evaluated in high-fat diet-fed LACA mice for 12 weeks. Mice were divided into four groups: control group fed a normal diet (10 % fat as energy); a group fed a high-fat diet; a group fed the same high-fat diet supplemented with FM-BR; a group fed the same high-fat diet supplemented with FM-WG. The inclusion of FM-BR at 10 % (w/w) in a high-fat diet had more beneficial effects than that of FM-WG. FM-BR supplementation prevented body weight gain, improved lipid profile and anti-inflammatory status, alleviated oxidative stress, regulated the expression levels of several obesity-related genes, increased the abundance of beneficial gut bacteria (Lactobacillus, Bifidobacteria and Roseburia) and suppressed the abundance of Enterobacter in caecal contents (P≤ 0·05). In conclusion, FM-BR supplementation could be an effective strategy for preventing high-fat diet-induced changes and developing FM-BR-enriched functional foods.

  11. Effect of enzymatic hydrolysis of starch on pasting, rheological and viscoelastic properties of milk-barnyard millet (Echinochloa frumentacea) blends meant for spray drying.

    PubMed

    Kumar, P Arun; Pushpadass, Heartwin A; Franklin, Magdaline Eljeeva Emerald; Simha, H V Vikram; Nath, B Surendra

    2016-10-01

    The influence of enzymatic hydrolysis of starch on the pasting properties of barnyard millet was studied using a rheometer. The effects of blending hydrolyzed barnyard millet wort with milk at different ratios (0:1, 1:1, 1:1.5 and 1:2) on flow and viscoelastic behavior were investigated. From the pasting curves, it was evident that enzymatically-hydrolyzed starch did not exhibit typical pasting characteristics expected of normal starch. The Herschel-Bulkley model fitted well to the flow behaviour data, with coefficient of determination (R(2)) ranging from 0.942 to 0.988. All milk-wort blends demonstrated varying degree of shear thinning with flow behavior index (n) ranging from 0.252 to 0.647. Stress-strain data revealed that 1:1 blend of milk to wort had the highest storage modulus (7.09-20.06Pa) and an elastically-dominant behavior (phase angle <45°) over the tested frequency range. The crossover point of G' and G" shifted to higher frequencies with increasing wort content. From the flow and viscoelastic behavior, it was concluded that the 1:1 blend of milk to wort would have least phase separation and better flowability during spray drying.

  12. 7 CFR 319.41-5a - Administrative instructions; method used for the disinfection of imported broomcorn and broomcorn...

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... equivalent per 1,000 cubic feet of space. (3) The air pressure in the fumigation chamber shall be reduced to... acid shall be introduced and the low pressure held for the duration of the fumigation. (4) The exposure shall be not less than 3 hours. (b) Steam sterilization. (1) The air pressure in the treating...

  13. Transgenic Pearl Millet Male Fertility Restorer Line (ICMP451) and Hybrid (ICMH451) Expressing Brassica juncea Nonexpressor of Pathogenesis Related Genes 1 (BjNPR1) Exhibit Resistance to Downy Mildew Disease

    PubMed Central

    Khareedu, Venkateswara Rao; Vudem, Dashavantha Reddy

    2014-01-01

    Brassica juncea Nonexpressor of pathogenesis-related genes 1 (BjNPR1) has been introduced into pearl millet male fertility restorer line ICMP451 by Agrobacterium tumefaciens-mediated genetic transformation. Transgenic pearl millet plants were regenerated from the phosphinothricin-resistant calli obtained after co-cultivation with A. tumefaciens strain LBA4404 harbouring Ti plasmid pSB111-bar-BjNPR1. Molecular analyses confirmed the stable integration and expression of BjNPR1 in transgenic pearl millet lines. Transgenes BjNPR1 and bar were stably inherited and disclosed co-segregation in subsequent generations in a Mendelian fashion. Transgenic pearl millet hybrid ICMH451-BjNPR1 was developed by crossing male-sterile line 81A X homozygous transgenic line ICMP451-BjNPR1. T3 and T4 homozygous lines of ICMP451-BjNPR1 and hybrid ICMH451-BjNPR1 exhibited resistance to three strains of downy mildew pathogen, while the untransformed ICMP451 and the isogenic hybrid ICMH451 plants were found susceptible. Following infection with S. graminicola, differential expression of systemic acquired resistance pathway genes, UDP-glucose salicylic acid glucosyl transferase and pathogenesis related gene 1 was observed in transgenic ICMP451-BjNPR1 and untransformed plants indicating the activation of systemic acquired resistance pathway contributing to the transgene-mediated resistance against downy mildew. The transgenic pearl millet expressing BjNPR1 showed resistance to multiple strains of S. graminicola and, as such, seems promising for the development of durable downy mildew resistant hybrids. PMID:24603762

  14. Assessment of genetic diversity, population structure and relationships in Indian and non-Indian genotypes of finger millet (Eleusine coracana (L.) Gaertn) using genomic SSR markers.

    PubMed

    Ramakrishnan, M; Antony Ceasar, S; Duraipandiyan, V; Al-Dhabi, N A; Ignacimuthu, S

    2016-01-01

    We evaluated the genetic variation and population structure in Indian and non-Indian genotypes of finger millet using 87 genomic SSR primers. The 128 finger millet genotypes were collected and genomic DNA was isolated. Eighty-seven genomic SSR primers with 60-70 % GC contents were used for PCR analysis of 128 finger millet genotypes. The PCR products were separated and visualized on a 6 % polyacrylamide gel followed by silver staining. The data were used to estimate major allele frequency using Power Marker v3.0. Dendrograms were constructed based on the Jaccard's similarity coefficient. Statistical fitness and population structure analyses were performed to find the genetic diversity. The mean major allele frequency was 0.92; the means of polymorphic alleles were 2.13 per primer and 1.45 per genotype; the average polymorphism was 59.94 % per primer and average PIC value was 0.44 per primer. Indian genotypes produced an additional 0.21 allele than non-Indian genotypes. Gene diversity was in the range from 0.02 to 0.35. The average heterozygosity was 0.11, close to 100 % homozygosity. The highest inbreeding coefficient was observed with SSR marker UGEP67. The Jaccard's similarity coefficient value ranged from 0.011 to 0.836. The highest similarity value was 0.836 between genotypes DPI009-04 and GPU-45. Indian genotypes were placed in Eleusine coracana major cluster (EcMC) 1 along with 6 non-Indian genotypes. AMOVA showed that molecular variance in genotypes from various geographical regions was 4 %; among populations it was 3 % and within populations it was 93 %. PCA scatter plot analysis showed that GPU-28, GPU-45 and DPI009-04 were closely dispersed in first component axis. In structural analysis, the genotypes were divided into three subpopulations (SP1, SP2 and SP3). All the three subpopulations had an admixture of alleles and no pure line was observed. These analyses confirmed that all the genotypes were genetically diverse and had been grouped based on

  15. Effects of replacing grass silage with forage pearl millet silage on milk yield, nutrient digestion, and ruminal fermentation of lactating dairy cows.

    PubMed

    Brunette, T; Baurhoo, B; Mustafa, A F

    2016-01-01

    This study investigated the effects of dietary replacement of grass silage (GS) with forage millet silages that were harvested at 2 stages of maturity [i.e., vegetative stage and dough to ripe seed (mature) stage] on milk production, apparent total-tract digestibility, and ruminal fermentation characteristics of dairy cows. Fifteen lactating Holstein cows were used in a replicated 3 × 3 Latin square experiment and fed (ad libitum) a total mixed ration (60:40 forage:concentrate ratio). Dietary treatments included control (GS), vegetative millet silage (EM), and mature millet silage (MM) diets. Experimental silages comprised 24% of dietary dry matter (DM). Soybean meal and slow-release urea were added in millet diets to balance for crude protein (CP). Three additional ruminally fistulated cows were used to determine the effect of treatments on ruminal fermentation and total-tract nutrient utilization. Cows fed the GS diet consumed more DM (22.9 vs. 21.7 ± 1.02 kg/d) and CP (3.3 vs. 3.1 ± 0.19 kg/d), and similar starch (4.9 ± 0.39 kg/d) and neutral detergent fiber (NDF; 8.0 ± 0.27 kg/d) compared with cows fed the MM diet. Replacing the EM diet with the MM diet did not affect DM, NDF, or CP intakes. Cows fed the MM diet produced less milk (26.1 vs. 29.1 ± 0.79 kg/d), energy-corrected milk (28.0 vs.30.5 ± 0.92 kg/d), and 4% fat-corrected milk (26.5 vs. 28.3 ± 0.92 kg/d) yields than cows fed the GS diet. However, cows fed diets with EM and GS produced similar yields of milk, energy-corrected milk, and 4% fat-corrected milk. Feed efficiency (milk yield:DM intake) was greater only for cows fed the GS diet than those fed the MM diet. Milk protein yield and concentration were greater among cows fed the GS diet compared with those fed the EM or MM diets. Milk fat and lactose concentrations were not influenced by diet. However, milk urea N was lower for cows fed the GS diet than for those fed the MM diet. Ruminal NH3-N was greater for cows fed the EM diet than for

  16. Drinking From the Same Straw: Crop Growth and Evidence of Water Transfer from Native Shrubs to Millet in a Sahelian Agro-Ecosystem

    NASA Astrophysics Data System (ADS)

    Bogie, N. A.; Bayala, R.; Fogel, M. L.; Diedhiou, I.; Dick, R.; Ghezzehei, T. A.

    2015-12-01

    A changing climate along with human and animal population pressure can have a devastating effect on crop yields and food security in the Sudano-Sahel. Agricultural solutions to address soil degradation and crop water stress are needed to combat this increasingly difficult situation. Significant differences in crop success have been observed in peanut and millet grown in association with two native evergreen shrubs Piliostigma reticulatum, and Guiera senegalensis at the sites of Nioro du Rip and Keur Matar, respectively. We investigate how farmers can increase crop productivity by capitalizing on the evolutionary adaptation of native shrubs to the harsh Sudano-Sahelian environment as well as the physical mechanisms at work in the system that can lead to more robust yields. Soil moisture, transpiration rate, crop growth and soil and leaf water potential data were collected during a dry season millet irrigation experiment where stress was imposed in the intercropped system. Despite lower soil moisture content, crops grown in association with shrubs have increased biomass production and a faster development cycle. An isotopic tracer study investigating hydraulic redistribution was carried out by injecting deuterated water into the roots of three shrubs at one meter depth and sampling shrubs and nearby crops for isotopic analysis of plant water. Deuterium Enriched water was found in the shrubs of two out of three plots. Deuterium enriched water was found in the crops and shrubs in all three plots. These findings build on work that was completed in 2004 at the site, but point to larger differences in crop growth and strong evidence for the sharing of hydraulically redistributed water. Using even the limited resources that farmers possess, this agroforestry technique can be expanded over wide swaths of the Sahel.

  17. Greenhouse gas emissions from rice, peanut and millet farms in peninsular India: Effects of water and nitrogen management

    NASA Astrophysics Data System (ADS)

    Kritee, K.; Tiwari, R.; Nair, D.; Loecke, T. D.; Adhya, T. K.; Rudek, J.; Ahuja, R.; Hamburg, S.

    2013-12-01

    At Environmental Defense Fund (EDF), we recognize that any intervention to mitigate greenhouse gas (GHG) emissions should meet the interests of small scale farmers and low-carbon farming (LCF) is an integral component of our work on international climate. As a part of our Emissions Measurement and Methodology Development (EMD) Project, a joint undertaking with Indian NGO partners of the Fair Climate Network (FCN), five GHG measurement laboratories were set up across three states in peninsular (south) India. These labs represent different agro-ecological zones within the dryland agriculture belt in South India for which no reliable datasets on GHG emission have been available. Our approach for collecting gas samples was based on the Gracenet protocol. Sampling for nitrous oxide and methane emissions were made on approximately 50% of the total number of days in a growing season and once a week during fallow periods. In order to capture the peak emissions of nitrous oxide, samples were collected for 3-4 consecutive days after critical events like tillage, weeding, fertilization, and rainfall/irrigation. The research team collected field data at the time of sampling (temperature of the soil, water and air; and water levels). We also recorded parameters (e.g. water, fertilizer, labor and energy use; and yields) which were necessary for calculating farm profitability. Our data from 2012-2013 suggest that, for peninsular India, low-carbon rice cultivation techniques offer very large emission reduction potential (2-5 metric tons CO2e per acre per year), with smaller reductions from peanut and millet (0.15-0.5 metric ton CO2e per acre per season). The Tier 1 IPCC emissions factors 1) grossly underestimate both the amount of nitrous oxide emission from conventional rice cultivation practices, and the extent to which it can be reduced through better fertilizer management and 2) overestimate the methane emission reduction possible due to water management for rice paddies by a

  18. Studies on long-term impact of STCR based integrated fertilizer use on pearl millet (Pennisetum glaucum)-wheat (Triticum aestivum) cropping system in semi arid condition of India.

    PubMed

    Sharma, V K; Pandey, R N; Sharma, B M

    2015-01-01

    A long-term field experiment on pearl millet - wheat cropping system with soil test crop response correlation (STCR) based fertilizer application was initiated during kharif- 2003 on a sandy loam soil (Typic Halustept) at a research farm of Indian Agricultural Research Institute, New Delhi. The aim of the experiment was to study the impact of STCR based integrated fertilizer application for targeted yield of pearl millet - wheat cropping sequence yield and changes in soil health. The result showed a significant and positive impact of integrated use of the fertilizerwith FYM on productivity of the cropping sequence and soil fertility. The STCR based integrated fertilizer recommendations with FYM produced significantly higher grain and straw yields of pearl millet and wheat crops as compared to other treatments. The highest average (2003 to 2010-11) grain and straw yield of pearl millet (2.85 and 6.59 t ha(-1)) and wheat (5.32 and 7.17 t ha(-1)) was recorded with the application of STCR based integrated fertilizer recommendations (T2) for targeted level of yield 2.5 and 5.0 ha(-1), respectively. Average increase in grain and straw yield of pearl millet was 203 and 197% and 196 and 193% of wheat under T2 treatment over control (T4). After harvest of wheat crops (2010-11), the physical, biological properties and fertility status i.e. available N, P and K of soil were improved in the treatments where STCR based integrated fertilizer dose with 10 t FYM (T2) and FYM @20 t ha(-1)(T1) were applied in both the crops and were significantly higher as compared to T3 treatment except available phosphorus. Economic analysis based on average yield of eight cropping sequence (2003 to 2010-11), pearl millet - wheat cropping sequence gave maximum net return of Rs. 100,907 ha(-1) yr(-1) and total return of Rs. 64,992/ ha(-1)yr(-1) over control with STCR based integrated fertilizer recommendations (T2). It is concluded that STCR based integrated fertilizer can be adopted by the farmers

  19. Overexpression of the autophagy-related gene SiATG8a from foxtail millet (Setaria italica L.) confers tolerance to both nitrogen starvation and drought stress in Arabidopsis.

    PubMed

    Li, Wei-wei; Chen, Ming; Zhong, Li; Liu, Jia-ming; Xu, Zhao-shi; Li, Lian-cheng; Zhou, Yong-Bin; Guo, Chang-Hong; Ma, You-Zhi

    2015-12-25

    Autophagy is an evolutionarily conserved biological process in all eukaryotes for the degradation of intracellular components for nutrient recycling. Autophagy is known to be involved in responses to low nitrogen stress in Arabidopsis. Foxtail millet has strong abiotic stress resistance to both low nutrient and drought stress. However, to date, there have only been a few genes reported to be related with abiotic stress resistance in foxtail millet. In this study, we identified an autophagy-related gene, SiATG8a, from foxtail millet. SiATG8a is mainly expressed in stems and its expression was dramatically induced by drought stress and nitrogen starvation treatments. SiATG8a was localized in the membrane and cytoplasm of foxtail millet. Overexpression of SiATG8a in Arabidopsis conferred tolerance to both nitrogen starvation and to drought stress. Under nitrogen starvation conditions, the SiATG8a transgenic plants had larger root and leaf areas and accumulated more total nitrogen than wild-type plants. The transgenic plants had lower total protein concentrations than did the WT plants. Under drought stress, the SiATG8a transgenic plants had higher survival rates, chlorophyll content, and proline content, but had lower MDA content than wild type plants. Taken together, our results represent the first identified case where overexpression of autophagy related gene can simultaneously improve plant resistance to low nitrogen and drought stresses. These findings implicate plant autophagy in plant stress responses to low nitrogen and drought and should be helpful in efforts to improve stresses resistance to nitrogen starvation and drought of crops by genetic transformation.

  20. Effect of germination of finger millet on nutritional value of foods and effect of food supplement on nutrition and anaemia status in Tanzanian children.

    PubMed

    Tatala, S; Ndossi, G; Ash, D; Mamiro, P

    2007-05-01

    Inadequate dietary intake, often combined with an infection can lead to malnutrition that often manifest as growth failure or deficiency of essentials nutrients including iron leading to iron deficiency anaemia. In an effort to investigate diet in relation to nutrition status of children, diet and dietary intake were investigated in rural Tanzania. The effect of germination of finger millet based food recipe on its nutritional value was evaluated. The food consisted of finger millet flour, kidney beans, ground peanuts and dried mangoes at predetermined proportions of 75:10:10:5 respectively. Dietary habits of young children were investigated and effects of a fortified food supplement and the cereal based recipe on nutrition status of children were investigated. The two diets were then supplemented to children for 6 months and changes on anaemia and anthropometrical indices of children were evaluated at follow up periods. To assess anaemia and iron status, haemoglobin (Hb), haematocrit (Hct), erythrocyte protoporphyrin (EP) and serum ferritin (SF); and weights and heights were measured to assess growth. A significant improvement in nutrient density was noted in processed cereals. Bioavailability of iron in cereal based diet increased from 0.75 +/- 18 to 1.25 +/- 41 mg/100 g (P = 008), viscosity was significantly raised by 12% and phytate concentration was reduced from 4.5 +/- 0.5 to 4.1 +/- 0.5 mg/g (P = 0.03). Significantly lower intake of iron was observed in schoolchildren with Hb < 11.5 g/dl) compared to those who were normal. Total iron intake was 22+/- 7 and 27 +/- 13 mg/day, respectively (P < 0.05). There was a significant correlation between iron intake and serum ferritin (r = 0.233, P < 0.05). After six months of supplementing children with the fortified beverage a significantly larger increase in haemoglobin concentration was shown in the fortified group than in the non-fortified group (a difference of 6.2 versus 3.2 g/dl respectively). Supplementing

  1. Role of plant growth regulators and a saprobic fungus in enhancement of metal phytoextraction potential and stress alleviation in pearl millet.

    PubMed

    Firdaus-e-Bareen; Shafiq, Muhammad; Jamil, Sidra

    2012-10-30

    "Assisted phytoextraction" involving application of chemical additives such as plant growth regulators (PGRs) has become a trend in phytoremediation technology. This study identifies a cost-effective, naturally available crude PGR (PGR1) that produces the same effects as the commercial PGR (PGR2), increasing metal uptake by plants and the reduction of metal stress. Assisted phytoextraction by pearl millet (Pennisetum glaucum) from a multi-metal (Cd, Cr, Cu, Fe, Na and Zn) contaminated soil medium with tannery solid waste (TSW) soil amendments of 5 and 10%, was evaluated in a full-factorial pot trial with PGR1, PGR2 and Trichoderma pseudokoningii as factors. The effects of these phytoextraction assistants were measured through dry biomass production, heavy metal uptake, stress tolerance enzymes catalase (CAT) and superoxide dismutase (SOD), soluble protein content of plant, and phytoextraction efficiency. Dry biomass and multi-metal accumulation were the highest in the soil treatments with a combined application of PGR1, PGR2 and T. pseudokoningii and the lowest in the control. The soluble protein contents and the SOD and CAT values were the highest in the 10% TSW treatment provided with PGR2+T. pseudokoningii, while the lowest were in the control. Thus, application of crude PGR in combination with other phytoextraction assistants can increase biomass production as well as multi-metal accumulation in plants. However, the biochemical properties of the plant depend on the level of TSW stress in the soil treatment as well as the type of phytoextraction assistants.

  2. Comprehensive analysis of SET domain gene family in foxtail millet identifies the putative role of SiSET14 in abiotic stress tolerance

    PubMed Central

    Yadav, Chandra Bhan; Muthamilarasan, Mehanathan; Dangi, Anand; Shweta, Shweta; Prasad, Manoj

    2016-01-01

    SET domain-containing genes catalyse histone lysine methylation, which alters chromatin structure and regulates the transcription of genes that are involved in various developmental and physiological processes. The present study identified 53 SET domain-containing genes in C4 panicoid model, foxtail millet (Setaria italica) and the genes were physically mapped onto nine chromosomes. Phylogenetic and structural analyses classified SiSET proteins into five classes (I–V). RNA-seq derived expression profiling showed that SiSET genes were differentially expressed in four tissues namely, leaf, root, stem and spica. Expression analyses using qRT-PCR was performed for 21 SiSET genes under different abiotic stress and hormonal treatments, which showed differential expression of these genes during late phase of stress and hormonal treatments. Significant upregulation of SiSET gene was observed during cold stress, which has been confirmed by over-expressing a candidate gene, SiSET14 in yeast. Interestingly, hypermethylation was observed in gene body of highly differentially expressed genes, whereas methylation event was completely absent in their transcription start sites. This suggested the occurrence of demethylation events during various abiotic stresses, which enhance the gene expression. Altogether, the present study would serve as a base for further functional characterization of SiSET genes towards understanding their molecular roles in conferring stress tolerance. PMID:27585852

  3. Milk from cows grazing on cool-season pastures provides an enhanced profile of bioactive fatty acids compared to those grazed on a monoculture of pearl millet.

    PubMed

    Bainbridge, Melissa L; Egolf, Emily; Barlow, John W; Alvez, Juan P; Roman, Joe; Kraft, Jana

    2017-02-15

    The demand for dairy products from grass-fed cows is driven, in part, by their more desirable fatty acid (FA) profile, containing more n-3 FA and conjugated linoleic acids (CLA) than conventionally produced dairy products. This study investigated the effects of pearl millet (PM) vs. cool-season pasture (CSP) on animal performance and milk FA in a grazing system. Eight Holstein dairy cows were used in a repeated measures design with four-week periods. Forage type had no effect on animal performance (estimated dry matter intake, milk production, fat, or protein). The contents of CLA and n-3 FA in a serving of whole milk (3.25% fat) increased when cows grazed CSP compared to PM. A serving of whole milk from cows grazing PM had a higher content of saturated FA and branched-chain FA. In conclusion, the contents of various bioactive FA were higher in milk fat of cows grazing a CSP compared to PM. PMID:27664694

  4. In Silico and Fluorescence In Situ Hybridization Mapping Reveals Collinearity between the Pennisetum squamulatum Apomixis Carrier-Chromosome and Chromosome 2 of Sorghum and Foxtail Millet

    PubMed Central

    Sapkota, Sirjan; Conner, Joann A.; Hanna, Wayne W.; Simon, Bindu; Fengler, Kevin; Deschamps, Stéphane; Cigan, Mark; Ozias-Akins, Peggy

    2016-01-01

    Apomixis, or clonal propagation through seed, is a trait identified within multiple species of the grass family (Poaceae). The genetic locus controlling apomixis in Pennisetum squamulatum (syn Cenchrus squamulatus) and Cenchrus ciliaris (syn Pennisetum ciliare, buffelgrass) is the apospory-specific genomic region (ASGR). Previously, the ASGR was shown to be highly conserved but inverted in marker order between P. squamulatum and C. ciliaris based on fluorescence in situ hybridization (FISH) and varied in both karyotype and position of the ASGR on the ASGR-carrier chromosome among other apomictic Cenchrus/Pennisetum species. Using in silico transcript mapping and verification of physical positions of some of the transcripts via FISH, we discovered that the ASGR-carrier chromosome from P. squamulatum is collinear with chromosome 2 of foxtail millet and sorghum outside of the ASGR. The in silico ordering of the ASGR-carrier chromosome markers, previously unmapped in P. squamulatum, allowed for the identification of a backcross line with structural changes to the P. squamulatum ASGR-carrier chromosome derived from gamma irradiated pollen. PMID:27031857

  5. In Silico and Fluorescence In Situ Hybridization Mapping Reveals Collinearity between the Pennisetum squamulatum Apomixis Carrier-Chromosome and Chromosome 2 of Sorghum and Foxtail Millet.

    PubMed

    Sapkota, Sirjan; Conner, Joann A; Hanna, Wayne W; Simon, Bindu; Fengler, Kevin; Deschamps, Stéphane; Cigan, Mark; Ozias-Akins, Peggy

    2016-01-01

    Apomixis, or clonal propagation through seed, is a trait identified within multiple species of the grass family (Poaceae). The genetic locus controlling apomixis in Pennisetum squamulatum (syn Cenchrus squamulatus) and Cenchrus ciliaris (syn Pennisetum ciliare, buffelgrass) is the apospory-specific genomic region (ASGR). Previously, the ASGR was shown to be highly conserved but inverted in marker order between P. squamulatum and C. ciliaris based on fluorescence in situ hybridization (FISH) and varied in both karyotype and position of the ASGR on the ASGR-carrier chromosome among other apomictic Cenchrus/Pennisetum species. Using in silico transcript mapping and verification of physical positions of some of the transcripts via FISH, we discovered that the ASGR-carrier chromosome from P. squamulatum is collinear with chromosome 2 of foxtail millet and sorghum outside of the ASGR. The in silico ordering of the ASGR-carrier chromosome markers, previously unmapped in P. squamulatum, allowed for the identification of a backcross line with structural changes to the P. squamulatum ASGR-carrier chromosome derived from gamma irradiated pollen.

  6. Comprehensive analysis of SET domain gene family in foxtail millet identifies the putative role of SiSET14 in abiotic stress tolerance.

    PubMed

    Yadav, Chandra Bhan; Muthamilarasan, Mehanathan; Dangi, Anand; Shweta, Shweta; Prasad, Manoj

    2016-01-01

    SET domain-containing genes catalyse histone lysine methylation, which alters chromatin structure and regulates the transcription of genes that are involved in various developmental and physiological processes. The present study identified 53 SET domain-containing genes in C4 panicoid model, foxtail millet (Setaria italica) and the genes were physically mapped onto nine chromosomes. Phylogenetic and structural analyses classified SiSET proteins into five classes (I-V). RNA-seq derived expression profiling showed that SiSET genes were differentially expressed in four tissues namely, leaf, root, stem and spica. Expression analyses using qRT-PCR was performed for 21 SiSET genes under different abiotic stress and hormonal treatments, which showed differential expression of these genes during late phase of stress and hormonal treatments. Significant upregulation of SiSET gene was observed during cold stress, which has been confirmed by over-expressing a candidate gene, SiSET14 in yeast. Interestingly, hypermethylation was observed in gene body of highly differentially expressed genes, whereas methylation event was completely absent in their transcription start sites. This suggested the occurrence of demethylation events during various abiotic stresses, which enhance the gene expression. Altogether, the present study would serve as a base for further functional characterization of SiSET genes towards understanding their molecular roles in conferring stress tolerance. PMID:27585852

  7. Genetic Screening of Functional Properties of Lactic Acid Bacteria in a Fermented Pearl Millet Slurry and in the Metagenome of Fermented Starchy Foods▿

    PubMed Central

    Turpin, Williams; Humblot, Christèle; Guyot, Jean-Pierre

    2011-01-01

    Lactic acid bacteria (LAB) (n = 152) in African pearl millet slurries and in the metagenomes of amylaceous fermented foods were investigated by screening 33 genes involved in probiotic and nutritional functions. All isolates belonged to six species of the genera Pediococcus and Lactobacillus, and Lactobacillus fermentum was the dominant species. We screened the isolates for the abilities to survive passage through the gastrointestinal tract and to synthesize folate and riboflavin. The isolates were also tested in vitro for their abilities to survive exposure to bile salts and to survive at pH 2. Because the ability to hydrolyze starch confers an ecological advantage on LAB that grow in starchy matrixes as well as improving the nutritional properties of the gruels, we screened for genes involved in starch metabolism. The results showed that genes with the potential ability to survive passage through the gastrointestinal tract were widely distributed among isolates and metagenomes, whereas in vitro tests showed that only a limited set of isolates, mainly those belonging to L. fermentum, could tolerate a low pH. In contrast, the wide distribution of genes associated with bile salt tolerance, in particular bsh, is consistent with the high frequency of tolerance to bile salts observed. Genetic screening revealed a potential for folate and riboflavin synthesis in both isolates and metagenomes, as well as high variability among genes related to starch metabolism. Genetic screening of isolates and metagenomes from fermented foods is thus a promising approach for assessing the functional potential of food microbiotas. PMID:22003019

  8. In Silico and Fluorescence In Situ Hybridization Mapping Reveals Collinearity between the Pennisetum squamulatum Apomixis Carrier-Chromosome and Chromosome 2 of Sorghum and Foxtail Millet.

    PubMed

    Sapkota, Sirjan; Conner, Joann A; Hanna, Wayne W; Simon, Bindu; Fengler, Kevin; Deschamps, Stéphane; Cigan, Mark; Ozias-Akins, Peggy

    2016-01-01

    Apomixis, or clonal propagation through seed, is a trait identified within multiple species of the grass family (Poaceae). The genetic locus controlling apomixis in Pennisetum squamulatum (syn Cenchrus squamulatus) and Cenchrus ciliaris (syn Pennisetum ciliare, buffelgrass) is the apospory-specific genomic region (ASGR). Previously, the ASGR was shown to be highly conserved but inverted in marker order between P. squamulatum and C. ciliaris based on fluorescence in situ hybridization (FISH) and varied in both karyotype and position of the ASGR on the ASGR-carrier chromosome among other apomictic Cenchrus/Pennisetum species. Using in silico transcript mapping and verification of physical positions of some of the transcripts via FISH, we discovered that the ASGR-carrier chromosome from P. squamulatum is collinear with chromosome 2 of foxtail millet and sorghum outside of the ASGR. The in silico ordering of the ASGR-carrier chromosome markers, previously unmapped in P. squamulatum, allowed for the identification of a backcross line with structural changes to the P. squamulatum ASGR-carrier chromosome derived from gamma irradiated pollen. PMID:27031857

  9. Structural characterization of (1→2)-β-xylose-(1→3)-α-arabinose-containing oligosaccharide products of extracted switchgrass (Panicum virgatum, L.) xylan after exhaustive enzymatic treatment with α-arabinofuranosidase and β-endo-xylanase.

    PubMed

    Bowman, Michael J; Dien, Bruce S; Vermillion, Karl E; Mertens, Jeffrey A

    2014-10-29

    Switchgrass (Panicum virgatum, L.) is a potential dedicated biomass crop for use in biocatalytic conversion systems to biofuels. Nearly 30% of switchgrass cell wall material is xylan. The complete depolymerization of xylan is desirable both as an additional carbon source for microbial fermentation and to reduce inhibitory effects xylooligomers may have on cellulolytic glycoside hydrolase enzymes. To identify structural features of switchgrass xylan that are not distinguishable by mass spectrometry alone, a α-arabinofuranosidase enzyme was used to remove the arabinose side chains from alkali-extracted switchgrass xylan from three cultivars with simultaneous hydrolysis by β-endo-xylanase to enrich for oligosaccharide products with extended branching. The two most abundant enzymatic digestion products were separated and characterized by LC-MS(n), linkage analysis, and NMR. These two oligosaccharides were present in all three switchgrass cultivars and found to contain (1→2)-β-xylose-(1→3)-α-arabinose side chains, a linkage not previously reported in switchgrass.

  10. The C-terminal motif of SiAGO1b is required for the regulation of growth, development and stress responses in foxtail millet (Setaria italica (L.) P. Beauv)

    PubMed Central

    Liu, Xiaotong; Tang, Sha; Jia, Guanqing; Schnable, James C.; Su, Haixia; Tang, Chanjuan; Zhi, Hui; Diao, Xianmin

    2016-01-01

    Foxtail millet (Setaria italica (L.) P. Beauv), which belongs to the Panicoideae tribe of the Poaceae, is an important grain crop widely grown in Northern China and India. It is currently developing into a novel model species for functional genomics of the Panicoideae as a result of its fully available reference genome sequence, small diploid genome (2n=18, ~510Mb), short life cycle, small stature and prolific seed production. Argonaute 1 (AGO1), belonging to the argonaute (AGO) protein family, recruits small RNAs and regulates plant growth and development. Here, we characterized an AGO1 mutant (siago1b) in foxtail millet, which was induced by ethyl methanesulfonate treatment. The mutant exhibited pleiotropic developmental defects, including dwarfing stem, narrow and rolled leaves, smaller panicles and lower rates of seed setting. Map-based cloning analysis demonstrated that these phenotypic variations were attributed to a C–A transversion, and a 7-bp deletion in the C-terminus of the SiAGO1b gene in siago1b. Yeast two-hybrid assays and BiFC experiments revealed that the mutated region was an essential functional motif for the interaction between SiAGO1b and SiHYL1. Furthermore, 1598 differentially expressed genes were detected via RNA-seq-based comparison of SiAGO1b and wild-type plants, which revealed that SiAGO1b mutation influenced multiple biological processes, including energy metabolism, cell growth, programmed death and abiotic stress responses in foxtail millet. This study may provide a better understanding of the mechanisms by which SiAGO1b regulates the growth and development of crops. PMID:27045099

  11. Isolation of Functional Components β-Glucan and γ-Amino Butyric Acid from Raw and Germinated Barnyard Millet (Echinochloa frumentaceae) and their Characterization.

    PubMed

    Sharma, Seema; Saxena, Dharmesh C; Riar, Charanjit S

    2016-09-01

    The study was carried out to analyze the characteristics of two functional constituents' viz. γ-amino butyric acid (GABA) and β-glucan extracted from raw and germination barnyard millet (var. PRJ-1). A significant (P ≤ 0.05) effect of germination (sprouting) was observed in yield, chemical composition, functional, rheological and antioxidant properties of β-glucan and GABA. The yield of GABA extract was 12.34 % and the content increased from 6.37 mg/100 g in raw to 35.70 mg/100 g in germinated sample. The DPPH, total antioxidant and hydrogen peroxide scavenging activities of GABA extract increased after germination from 45.34 to 65.34 %, 15.3 to 33.3 millimole/g and 38.4 to 64.7 millimole/g, respectively. The yield of β-glucan extract of raw and germinated flour was 6.05 and 5.01 % whereas the β-glucan contents were 83.30 and 79.64 %, respectively. The functional properties of β-glucan i.e., swelling power, water binding capacity and DPPH scavenging activity increased from 1.45 to 1.76 g/g, 2.13 to 2.32 g/g and 44.39 to 57.42 %, respectively, after germination. Similarly there was an increase in the storage modulus after germination process which attributes a better viscoelastic capacity of β-glucan at low frequencies. The results exploit that the β-glucan and GABA might promise a polymeric incipient to be implemented as food additives with variable functional and structural characteristics. PMID:27245684

  12. Genetic architecture of purple pigmentation and tagging of some loci to SSR markers in pearl millet, Pennisetum glaucum (L.) R. Br.

    PubMed Central

    Varalakshmi, Pusapati; Mohan Dev Tavva, Surya S; Arjuna Rao, Palakollu V; Subba Rao, Muktinutalapati V; Hash, Charles T

    2012-01-01

    This report describes the construction of integrated genetic maps in pearl millet involving certain purple phenotype and simple sequence repeat (SSR) markers. These maps provide a direct means of implementing DNA marker-assisted selection and of facilitating “map-based cloning” for engineering novel traits. The purple pigmentation of leaf sheath, midrib and leaf margin was inherited together ‘en bloc’ under the control of a single dominant locus (the ‘midrib complex’) and was inseparably associated with the locus governing the purple coloration of the internode. The purple panicle was caused by a single dominant locus. Each of the three characters (purple lamina, purple stigma and purple seed) was governed by two complementary loci. One of the two loci governing purple seed was associated with the SSR locus Xpsmp2090 in linkage group 1, with a linkage value of 22 cM, while the other locus was associated with the SSR locus Xpsmp2270 in linkage group 6, with a linkage value of 23 cM. The locus for purple pigmentation of the midrib complex was either responsible for pigmentation of the panicle in a pleiotropic manner or was linked to it very closely and associated with the SSR locus Xpsmp2086 in linkage group 4, with a suggestive linkage value of 21 cM. A dominant allele at this locus seems to be a prerequisite for the development of purple pigmentation in the lamina, stigma and seed. These findings suggest that the locus for pigmentation of the midrib complex might regulate the basic steps in anthocyanin pigment development by acting as a structural gene while other loci regulate the formation of color in specific plant parts. PMID:22481882

  13. Evaluation of water-use efficiency in foxtail millet (Setaria italica) using visible-near infrared and thermal spectral sensing techniques.

    PubMed

    Wang, Meng; Ellsworth, Patrick Z; Zhou, Jianfeng; Cousins, Asaph B; Sankaran, Sindhuja

    2016-05-15

    Water limitations decrease stomatal conductance (g(s)) and, in turn, photosynthetic rate (A(net)), resulting in decreased crop productivity. The current techniques for evaluating these physiological responses are limited to leaf-level measures acquired by measuring leaf-level gas exchange. In this regard, proximal sensing techniques can be a useful tool in studying plant biology as they can be used to acquire plant-level measures in a high-throughput manner. However, to confidently utilize the proximal sensing technique for high-throughput physiological monitoring, it is important to assess the relationship between plant physiological parameters and the sensor data. Therefore, in this study, the application of rapid sensing techniques based on thermal imaging and visual-near infrared spectroscopy for assessing water-use efficiency (WUE) in foxtail millet (Setaria italica (L.) P. Beauv) was evaluated. The visible-near infrared spectral reflectance (350-2500 nm) and thermal (7.5-14 µm) data were collected at regular intervals from well-watered and drought-stressed plants in combination with other leaf physiological parameters (transpiration rate-E, A(net), g(s), leaf carbon isotopic signature-δ(13)C(leaf), WUE). Partial least squares regression (PLSR) analysis was used to predict leaf physiological measures based on the spectral data. The PLSR modeling on the hyperspectral data yielded accurate and precise estimates of leaf E, gs, δ(13)C(leaf), and WUE with coefficient of determination in a range of 0.85-0.91. Additionally, significant differences in average leaf temperatures (~1°C) measured with a thermal camera were observed between well-watered plants and drought-stressed plants. In summary, the visible-near infrared reflectance data, and thermal images can be used as a potential rapid technique for evaluating plant physiological responses such as WUE. PMID:26992551

  14. Evaluation of water-use efficiency in foxtail millet (Setaria italica) using visible-near infrared and thermal spectral sensing techniques.

    PubMed

    Wang, Meng; Ellsworth, Patrick Z; Zhou, Jianfeng; Cousins, Asaph B; Sankaran, Sindhuja

    2016-05-15

    Water limitations decrease stomatal conductance (g(s)) and, in turn, photosynthetic rate (A(net)), resulting in decreased crop productivity. The current techniques for evaluating these physiological responses are limited to leaf-level measures acquired by measuring leaf-level gas exchange. In this regard, proximal sensing techniques can be a useful tool in studying plant biology as they can be used to acquire plant-level measures in a high-throughput manner. However, to confidently utilize the proximal sensing technique for high-throughput physiological monitoring, it is important to assess the relationship between plant physiological parameters and the sensor data. Therefore, in this study, the application of rapid sensing techniques based on thermal imaging and visual-near infrared spectroscopy for assessing water-use efficiency (WUE) in foxtail millet (Setaria italica (L.) P. Beauv) was evaluated. The visible-near infrared spectral reflectance (350-2500 nm) and thermal (7.5-14 µm) data were collected at regular intervals from well-watered and drought-stressed plants in combination with other leaf physiological parameters (transpiration rate-E, A(net), g(s), leaf carbon isotopic signature-δ(13)C(leaf), WUE). Partial least squares regression (PLSR) analysis was used to predict leaf physiological measures based on the spectral data. The PLSR modeling on the hyperspectral data yielded accurate and precise estimates of leaf E, gs, δ(13)C(leaf), and WUE with coefficient of determination in a range of 0.85-0.91. Additionally, significant differences in average leaf temperatures (~1°C) measured with a thermal camera were observed between well-watered plants and drought-stressed plants. In summary, the visible-near infrared reflectance data, and thermal images can be used as a potential rapid technique for evaluating plant physiological responses such as WUE.

  15. Multiple origins of the phenol reaction negative phenotype in foxtail millet, Setaria italica (L.) P. Beauv., were caused by independent loss-of-function mutations of the polyphenol oxidase (Si7PPO) gene during domestication.

    PubMed

    Inoue, Takahiko; Yuo, Takahisa; Ohta, Takeshi; Hitomi, Eriko; Ichitani, Katsuyuki; Kawase, Makoto; Taketa, Shin; Fukunaga, Kenji

    2015-08-01

    Foxtail millet shows variation in positive phenol color reaction (Phr) and negative Phr in grains, but predominant accessions of this crop are negative reaction type, and the molecular genetic basis of the Phr reaction remains unresolved. In this article, we isolated polyphenol oxidase (PPO) gene responsible for Phr using genome sequence information and investigated molecular genetic basis of negative Phr and crop evolution of foxtail millet. First of all, we searched for PPO gene homologs in a foxtail millet genome database using a rice PPO gene as a query and successfully found three copies of the PPO gene. One of the PPO gene homologs on chromosome 7 showed the highest similarity with PPO genes expressed in hulls (grains) of other cereal species including rice, wheat, and barley and was designated as Si7PPO. Phr phenotypes and Si7PPO genotypes completely co-segregated in a segregating population. We also analyzed the genetic variation conferring negative Phr reaction. Of 480 accessions of the landraces investigated, 87 (18.1 %) showed positive Phr and 393 (81.9 %) showed negative Phr. In the 393 Phr negative accessions, three types of loss-of-function Si7PPO gene were predominant and independently found in various locations. One of them has an SNP in exon 1 resulting in a premature stop codon and was designated as stop codon type, another has an insertion of a transposon (Si7PPO-TE1) in intron 2 and was designated as TE1-insertion type, and the other has a 6-bp duplication in exon 3 resulting in the duplication of 2 amino acids and was designated as 6-bp duplication type. As a rare variant of the stop codon type, one accession additionally has an insertion of a transposon, Si7PPO-TE2, in intron 2 and was designated as "stop codon +TE2 insertion type". The geographical distribution of accessions with positive Phr and those with three major types of negative Phr was also investigated. Accessions with positive Phr were found in subtropical and tropical regions at

  16. Iron bioavailability from a lipid-based complementary food fortificant mixed with millet porridge can be optimized by adding phytase and ascorbic acid but not by using a mixture of ferrous sulfate and sodium iron EDTA.

    PubMed

    Cercamondi, Colin I; Egli, Ines M; Mitchikpe, Evariste; Tossou, Felicien; Hessou, Joamel; Zeder, Christophe; Hounhouigan, Joseph D; Hurrell, Richard F

    2013-08-01

    Home fortification with lipid-based nutrient supplements (LNSs) is a promising approach to improve bioavailable iron and energy intake of young children in developing countries. To optimize iron bioavailability from an LNS named complementary food fortificant (CFF), 3 stable isotope studies were conducted in 52 young Beninese children. Test meals consisted of millet porridge mixed with CFF and ascorbic acid (AA). Study 1 compared iron absorption from FeSO4-fortifed meals with meals fortified with a mixture of FeSO4 and NaFeEDTA. Study 2 compared iron absorption from FeSO4-fortifed meals without or with extra AA. Study 3 compared iron absorption from FeSO4-fortified meals with meals containing phytase added prior to consumption, once without or once with extra AA. Iron absorption was measured as erythrocyte incorporation of stable isotopes. In study 1, iron absorption from FeSO4 (8.4%) was higher than that from the mixture of NaFeEDTA and FeSO4 (5.9%; P < 0.05). In study 2, the extra AA increased absorption (11.6%) compared with the standard AA concentration (7.3%; P < 0.001). In study 3, absorption from meals containing phytase without or with extra AA (15.8 and 19.9%, respectively) increased compared with meals without phytase (8.0%; P < 0.001). The addition of extra AA to meals containing phytase increased absorption compared with the test meals containing phytase without extra AA (P < 0.05). These findings suggest that phytase and AA, and especially a combination of the two, but not a mixture of FeSO4 and NaFeEDTA would be useful strategies to increase iron bioavailability from a CFF mixed with cereal porridge.

  17. Investigations of the Host Range of the Corn Cyst Nematode, Heterodera zeae, from Maryland

    PubMed Central

    Ringer, Chloe E.; Sardanelli, Sandra; Krusberg, Lorin R.

    1987-01-01

    The host range of the corn cyst nematode, Heterodera zeae, recently detected in Maryland, was investigated. A total of 269 plant entries, representing 68 families, 172 genera, and 204 species, was inoculated with cysts or a mixture of eggs and second-stage juveniles of H. zeae. The host range of the Maryland population of H. zeae was limited to plants of the Gramineae and included 11 tribes, 33 genera, 42 species, and 77 entries. All 22 corn (Zea mays) cultivars tested were hosts. Other economic hosts included certain cultivars of barley (Hordeum vulgare), oat (Arena sativa), rice (Oryza sativa), sorghum (Sorghum bicolor), sugar cane (Saccharum interspecific hybrid), and wheat (Triticum aestivum). Fall panicum (Panicum dichotomiflorum), a weed species common to cultivated fields in Maryland, was also a host for H. zeae. Other hosts included meadow foxtail (Alopecurus pratensis), Calamagrostis eipgeios, Job's tears (Coix Lachryma-Jobi), green sprangletop (Leptochloa dubia), witchgrass (Panicum capillare), broomcorn (Panicum miliaceum), fountain grass (Pennisetum rueppeli), reed canary grass (Phalaris arundinacea), common reed (Phragmites australis), eastern gamagrass (Tripsacum dactyloides), corn (Zea mays), and teosinte (Zea mexicana). PMID:19290286

  18. Adaptations between ecotypes and along environmental gradients in Panicum virgatum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Determining the patterns and mechanisms of adaptation to different habitats across the natural landscape is of fundamental importance to understanding the differentiation of populations and the evolution of new species. Most recent studies of habitat-mediated natural selection in the wild have focus...

  19. Selecting, establishing, and managing switchgrass (Panicum virgatum) for biofuels.

    PubMed

    Parrish, David J; Fike, John H

    2009-01-01

    Switchgrass is being widely considered as a feedstock for biofuel production. Much remains to be learned about ideal feedstock characteristics, but switchgrass offers many advantages already and can perhaps be manipulated to offer more. When planning to grow switchgrass, select a cultivar that is well adapted to the location - generally a lowland cultivar for the southern United States and an upland cultivar at higher latitudes. Plant non-dormant seed after soils are well warmed, preferably with no-till methods and always with good weed control. Except for weeds, few pests appear to be widespread; but disease and insect pests could become more important as acreages increase. Fertilization requirements are relatively low, with 50 kg N/ha/year being a good "generic" recommendation where a single harvest is taken after plants have senesced; more will be needed if biomass is harvested while still green. Switchgrass should be harvested no more than twice per year and may generally be expected to produce 12 to >or=20 mg/ha/year across its usual range of distribution. A single harvest may provide for maximum sustainable yields - especially if the harvest is taken after tops die back at the end of the season. Several harvesting technologies are available, but the preferred technology may depend on logistics and economics associated with the local processing point, or biorefinery.

  20. Selecting, Establishing, and Managing Switchgrass (Panicum virgatum) for Biofuels

    NASA Astrophysics Data System (ADS)

    Parrish, David J.; Fike, John H.

    Switchgrass is being widely considered as a feedstock for biofuel production. Much remains to be learned about ideal feedstock characteristics, but switchgrass offers many advantages already and can perhaps be manipulated to offer more. When planning to grow switchgrass, select a cultivar that is well adapted to the location - generally a lowland cultivar for the southern United States and an upland cultivar at higher latitudes. Plant non-dormant seed after soils are well warmed, preferably with no-till methods and always with good weed control. Except for weeds, few pests appear to be widespread; but disease and insect pests could become more important as acreages increase. Fertilization requirements are relatively low, with 50 kg N/ha/year being a good “generic” recommendation where a single harvest is taken after plants have senesced; more will be needed if biomass is harvested while still green. Switchgrass should be harvested no more than twice per year and may generally be expected to produce 12 to ≥20 mg/ha/year across its usual range of distribution. A single harvest may provide for maximum sustainable yields - especially if the harvest is taken after tops die back at the end of the season. Several harvesting technologies are available, but the preferred technology may depend on logistics and economics associated with the local processing point, or biorefinery.

  1. ESTABLISHMENT AND EVALUATION OF SWITCHGRASS ON RECLAIMED MINE SOIL [English

    SciTech Connect

    Lang, David; Shankle, Brandon; Oswalt, Ernest; Duckworth, Jeremy; Sanborn, Judd; Buell, Rebecca; Roberson, Bill

    2010-06-30

    Switchgrass (Panicum virgatum L.) is a native warm season perennial grass that has productive potential of up to 20 Mg ha-1 of biomass and it persists for decades when harvested once per year. Switchgrass provides excellent ground cover and soil stabilization once established and contributes to soil sequestration of new carbon. Slow establishment on newly reclaimed soil, however, provides for significant erosive opportunities thereby requiring initial soil stabilization with a cover crop. Several planting options were evaluated on two topsoil substitute soils. The planting options included: 1) an existing stand of bermudagrass (Cynodon dactylon L.) that was killed with glyphosate followed by disking in red oxidized topsoil substitute and prime farmland topsoil respread in 2007, 2) red oxidized topsoil substitute was seeded directly with switchgrass, 3) browntop millet (Panicum ramosum) was established with switchgrass, 4) or switchgrass was established in senescing browntop millet or wheat without tillage. Switchgrass was successfully established into a bermudagrass sod that had been killed with herbicides and disked as well as into a senescing stand of browntop millet or wheat. Significant soil erosion occurred on the disked area in 2008 leading to considerable repair work followed by planting wheat. Disked areas that did not erode had an excellent stand of switchgrass with 23.3 plants m-2 in November, 2008. Eroded areas replanted in April, 2009 into senescing wheat had 46 plants m-2 by July, 2009. The area planted directly into newly respread soil in May, 2009 was eroded severely by a 75 mm thunderstorm and was repaired, disked and replanted to switchgrass and browntop millet. Switchgrass seeded with browntop millet had a sparse switchgrass stand and was replanted to switchgrass in August, 2009. Rainfall volumes from August, 2009 to October, 2009 totaled 750 mm, but new erosion damage in areas successfully planted to switchgrass has been minimal.

  2. 7 CFR 457.165 - Millet crop insurance provisions.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... of production. Upon such agreement, the insurance period for that acreage will end if you put the acreage to another use or abandon the crop. If agreement on the appraised amount of production is not... be used to determine the amount of production to count); or (B) If you elect to continue to care...

  3. Modeling Responses of Dryland Spring Triticale, Proso Millet and Foxtail Millet to Initial Soil Water in the High Plains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dryland farming strategies in the High Plains must make efficient use of limited and variable precipitation and stored water in the soil profile for stable and sustainable farm productivity. Current research efforts focus on replacing summer fallow in the region with more profitable and environmenta...

  4. Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium

    PubMed Central

    Ramstein, Guillaume P.; Evans, Joseph; Kaeppler, Shawn M.; Mitchell, Robert B.; Vogel, Kenneth P.; Buell, C. Robin; Casler, Michael D.

    2016-01-01

    Switchgrass is a relatively high-yielding and environmentally sustainable biomass crop, but further genetic gains in biomass yield must be achieved to make it an economically viable bioenergy feedstock. Genomic selection (GS) is an attractive technology to generate rapid genetic gains in switchgrass, and meet the goals of a substantial displacement of petroleum use with biofuels in the near future. In this study, we empirically assessed prediction procedures for genomic selection in two different populations, consisting of 137 and 110 half-sib families of switchgrass, tested in two locations in the United States for three agronomic traits: dry matter yield, plant height, and heading date. Marker data were produced for the families’ parents by exome capture sequencing, generating up to 141,030 polymorphic markers with available genomic-location and annotation information. We evaluated prediction procedures that varied not only by learning schemes and prediction models, but also by the way the data were preprocessed to account for redundancy in marker information. More complex genomic prediction procedures were generally not significantly more accurate than the simplest procedure, likely due to limited population sizes. Nevertheless, a highly significant gain in prediction accuracy was achieved by transforming the marker data through a marker correlation matrix. Our results suggest that marker-data transformations and, more generally, the account of linkage disequilibrium among markers, offer valuable opportunities for improving prediction procedures in GS. Some of the achieved prediction accuracies should motivate implementation of GS in switchgrass breeding programs. PMID:26869619

  5. First report of Tilletia pulcherrima on switchgrass (Panicum virgatum L.) in Texas

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass seed samples of cultivars ‘Blackwell’ and ‘Alamo’ from Bamert Seed Company, Muleshoe, Texas, and grown in Texas were examined microscopically for bunt fungi. Fourteen completely bunted seeds of ‘Blackwell’ and four in ‘Alamo’ were detected in 100 g samples of each. Teliospores were globo...

  6. Accuracy of genomic prediction in switchgrass (Panicum virgatum L.) improved by accounting for linkage disequilibrium

    DOE PAGESBeta

    Ramstein, Guillaume P.; Evans, Joseph; Kaeppler, Shawn M.; Mitchell, Robert B.; Vogel, Kenneth P.; Buell, C. Robin; Casler, Michael D.

    2016-02-11

    Switchgrass is a relatively high-yielding and environmentally sustainable biomass crop, but further genetic gains in biomass yield must be achieved to make it an economically viable bioenergy feedstock. Genomic selection (GS) is an attractive technology to generate rapid genetic gains in switchgrass, and meet the goals of a substantial displacement of petroleum use with biofuels in the near future. In this study, we empirically assessed prediction procedures for genomic selection in two different populations, consisting of 137 and 110 half-sib families of switchgrass, tested in two locations in the United States for three agronomic traits: dry matter yield, plant height,more » and heading date. Marker data were produced for the families’ parents by exome capture sequencing, generating up to 141,030 polymorphic markers with available genomic-location and annotation information. We evaluated prediction procedures that varied not only by learning schemes and prediction models, but also by the way the data were preprocessed to account for redundancy in marker information. More complex genomic prediction procedures were generally not significantly more accurate than the simplest procedure, likely due to limited population sizes. Nevertheless, a highly significant gain in prediction accuracy was achieved by transforming the marker data through a marker correlation matrix. Our results suggest that marker-data transformations and, more generally, the account of linkage disequilibrium among markers, offer valuable opportunities for improving prediction procedures in GS. Furthermore, some of the achieved prediction accuracies should motivate implementation of GS in switchgrass breeding programs.« less

  7. Development of In Vitro Systems for Switchgrass (Panicum virgatum) - Final Report for 1992 to 2002

    SciTech Connect

    Conger, B.V.

    2003-01-16

    Our project began on July 1, 1992, with the objective of developing systems that could be used in biotechnological approaches to switchgrass improvement. Within six months after initiation of the project, we had worked out protocols in which plants could be regenerated from callus cultures through both organogenesis and somatic embryogenesis. Documentation for both modes of regeneration was provided in our progress reports and in publications. One thousand regenerated plants were established in the field during the first year. We found that Alamo (lowland type) was much more amenable to in vitro culture, and plants could be regenerated much more easily than from Cave-in-Rock (upland type). During the first three years of the project, we studied the influence of genotype, culture medium components, explant type, etc., on regeneration. As mentioned, we found that the lowland cultivars Alamo and Kanlow were much easier to regenerate than upland cultivars, such as Trailblazer, Blackwell, and Cave-in-Rock. For callus induction, we initially used mature caryopses, young leaf tissue, and portions of seedlings. We were successful in inducing callus and regenerating plants from all explants. Two other systems developed during the 4th to 6th year period of the project included multiple shoot formation initiated from germinated seedlings and regenerable suspension cultures. The latter were initiated from embryogenic calluses produced from in vitro developed inflorescences. An important factor for producing multiple shoots was the presence of thidiazuron in the medium. The shoots could be easily rooted and numerous plantlets produced. The last 3 to 4 years of the project focused on anther and microspore culture experiments to produce haploid plants and on genetic transformation. Although thousands of putative haploid plants were produced from a few anthers, they were very weak and difficult to keep alive. Chromosome counts revealed the gametic number in cells where it was possible to count chromosomes. The isolated microspore culture experiments were not successful.

  8. Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

    DOE PAGESBeta

    Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Dixon, Richard A.; Voit, Eberhard O.

    2015-09-17

    Switchgrass is a prime target for biofuel production from inedible plant parts and has been the subject of numerous investigations in recent years. Yet, one of the main obstacles to effective biofuel production remains to be the major problem of recalcitrance. Recalcitrance emerges in part from the 3-D structure of lignin as a polymer in the secondary cell wall. Lignin limits accessibility of the sugars in the cellulose and hemicellulose polymers to enzymes and ultimately decreases ethanol yield. Monolignols, the building blocks of lignin polymers, are synthesized in the cytosol and translocated to the plant cell wall, where they undergomore » polymerization. The biosynthetic pathway leading to monolignols in switchgrass is not completely known, and difficulties associated with in vivo measurements of these intermediates pose a challenge for a true understanding of the functioning of the pathway. In this study, a systems biological modeling approach is used to address this challenge and to elucidate the structure and regulation of the lignin pathway through a computational characterization of alternate candidate topologies. The analysis is based on experimental data characterizing stem and tiller tissue of four transgenic lines (knock-downs of genes coding for key enzymes in the pathway) as well as wild-type switchgrass plants. These data consist of the observed content and composition of monolignols. The possibility of a G-lignin specific metabolic channel associated with the production and degradation of coniferaldehyde is examined, and the results support previous findings from another plant species. The computational analysis suggests regulatory mechanisms of product inhibition and enzyme competition, which are well known in biochemistry, but so far had not been reported in switchgrass. By including these mechanisms, the pathway model is able to represent all observations. In conclusion, the results show that the presence of the coniferaldehyde channel is necessary and that product inhibition and competition over cinnamoyl-CoA-reductase (CCR1) are essential for matching the model to observed increases in H-lignin levels in 4-coumarate:CoA-ligase (4CL) knockdowns. Moreover, competition for 4-coumarate:CoA-ligase (4CL) is essential for matching the model to observed increases in the pathway metabolites in caffeic acid O-methyltransferase (COMT) knockdowns. As far as possible, the model was validated with independent data.« less

  9. Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium.

    PubMed

    Ramstein, Guillaume P; Evans, Joseph; Kaeppler, Shawn M; Mitchell, Robert B; Vogel, Kenneth P; Buell, C Robin; Casler, Michael D

    2016-04-07

    Switchgrass is a relatively high-yielding and environmentally sustainable biomass crop, but further genetic gains in biomass yield must be achieved to make it an economically viable bioenergy feedstock. Genomic selection (GS) is an attractive technology to generate rapid genetic gains in switchgrass, and meet the goals of a substantial displacement of petroleum use with biofuels in the near future. In this study, we empirically assessed prediction procedures for genomic selection in two different populations, consisting of 137 and 110 half-sib families of switchgrass, tested in two locations in the United States for three agronomic traits: dry matter yield, plant height, and heading date. Marker data were produced for the families' parents by exome capture sequencing, generating up to 141,030 polymorphic markers with available genomic-location and annotation information. We evaluated prediction procedures that varied not only by learning schemes and prediction models, but also by the way the data were preprocessed to account for redundancy in marker information. More complex genomic prediction procedures were generally not significantly more accurate than the simplest procedure, likely due to limited population sizes. Nevertheless, a highly significant gain in prediction accuracy was achieved by transforming the marker data through a marker correlation matrix. Our results suggest that marker-data transformations and, more generally, the account of linkage disequilibrium among markers, offer valuable opportunities for improving prediction procedures in GS. Some of the achieved prediction accuracies should motivate implementation of GS in switchgrass breeding programs.

  10. Cellulosic butanol production from alkali-pretreated switchgrass (Panicum virgatum) and phragmites (Phragmites australis).

    PubMed

    Gao, Kai; Boiano, Simone; Marzocchella, Antonio; Rehmann, Lars

    2014-12-01

    A potential dedicated energy crop (switchgrass) and an invasive (North America) plant species (phragmites) were compared as potential substrates for acetone butanol ethanol (ABE) fermentation. Both biomass were pretreated with 1% (w/v) NaOH and subjected to enzymatic hydrolysis. Total reducing sugar yields were 365 and 385gkg(-1) raw biomass for switchgrass and phragmites. Fermentation of the hydrolysates resulted in overall ABE yields of 146 and 150gkg(-1) (per kg dry plant material), with a theoretical maximum of 189 and 208gkg(-1), respectively. Though similar overall solvent yields were obtained from both crops, the largest carbon loss in the case of switchgrass occurred during pretreatment, while the largest loss in the case of phragmites occurred to enzymatic hydrolysis. These findings suggest that higher overall yields are achievable and that both crops are suitable feedstocks for butanol fermentation.

  11. Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

    SciTech Connect

    Faraji, Mojdeh; Fonseca, Luis L.; Escamilla-Treviño, Luis; Dixon, Richard A.; Voit, Eberhard O.

    2015-09-17

    Switchgrass is a prime target for biofuel production from inedible plant parts and has been the subject of numerous investigations in recent years. Yet, one of the main obstacles to effective biofuel production remains to be the major problem of recalcitrance. Recalcitrance emerges in part from the 3-D structure of lignin as a polymer in the secondary cell wall. Lignin limits accessibility of the sugars in the cellulose and hemicellulose polymers to enzymes and ultimately decreases ethanol yield. Monolignols, the building blocks of lignin polymers, are synthesized in the cytosol and translocated to the plant cell wall, where they undergo polymerization. The biosynthetic pathway leading to monolignols in switchgrass is not completely known, and difficulties associated with in vivo measurements of these intermediates pose a challenge for a true understanding of the functioning of the pathway. In this study, a systems biological modeling approach is used to address this challenge and to elucidate the structure and regulation of the lignin pathway through a computational characterization of alternate candidate topologies. The analysis is based on experimental data characterizing stem and tiller tissue of four transgenic lines (knock-downs of genes coding for key enzymes in the pathway) as well as wild-type switchgrass plants. These data consist of the observed content and composition of monolignols. The possibility of a G-lignin specific metabolic channel associated with the production and degradation of coniferaldehyde is examined, and the results support previous findings from another plant species. The computational analysis suggests regulatory mechanisms of product inhibition and enzyme competition, which are well known in biochemistry, but so far had not been reported in switchgrass. By including these mechanisms, the pathway model is able to represent all observations. In conclusion, the results show that the presence of the coniferaldehyde channel is necessary and that product inhibition and competition over cinnamoyl-CoA-reductase (CCR1) are essential for matching the model to observed increases in H-lignin levels in 4-coumarate:CoA-ligase (4CL) knockdowns. Moreover, competition for 4-coumarate:CoA-ligase (4CL) is essential for matching the model to observed increases in the pathway metabolites in caffeic acid O-methyltransferase (COMT) knockdowns. As far as possible, the model was validated with independent data.

  12. Accuracy of genomic prediction in switchgrass (Panicum virgatum L.) improved by accounting for linkage disequilibrium

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass is a relatively high-yielding and environmentally sustainable biomass crop, but further genetic gains in biomass yield must be achieved to make it an economically viable bioenergy feedstock. Genomic selection is an attractive technology to generate rapid genetic gains in switchgrass and ...

  13. Effects of simulated oilfield produced water on early seedling growth after treatment in a pilot-scale constructed wetland system.

    PubMed

    Pardue, Michael J; Castle, James W; Rodgers, John H; Huddleston, George M

    2015-01-01

    Seed germination and early seedling growth bioassays were used to evaluate phytotoxicity of simulated oilfield produced water (OPW) before and after treatment in a subsurface-flow, pilot-scale constructed wetland treatment system (CWTS). Responses to untreated and treated OPW were compared among seven plant species, including three monocotyledons: corn (Zea mays), millet (Panicum miliaceum), and sorghum (Sorghum bicolor); and four dicotyledons: lettuce (Lactuca sativa), okra (Abelmoschus esculents), watermelon (Citrullus lanatus), and soybean (Glycine max). Phytotoxicity was greater in untreated OPW than in treated OPW. Exposures to untreated and treated OPW enhanced growth in some plant species (sorghum, millet, okra, and corn) relative to a negative control and reduced growth in other plant species (lettuce, soybean, and watermelon). Early seedling growth parameters indicated that dicotyledons were more sensitive to test waters compared to monocotyledons, suggesting that morphological differences between plant species affected phytotoxicity. Results indicated the following sensitivity scale for plant species: lettuce>soybean>watermelon>corn>okra≈millet>sorghum. Phytotoxicity of the treated OPW to lettuce and soybean, although concentrations of COCs were less than irrigation guideline concentrations, suggests that chemical characterization and comparison to guideline concentrations alone may not be sufficient to evaluate water for use in growing crops.

  14. Effects of simulated oilfield produced water on early seedling growth after treatment in a pilot-scale constructed wetland system.

    PubMed

    Pardue, Michael J; Castle, James W; Rodgers, John H; Huddleston, George M

    2015-01-01

    Seed germination and early seedling growth bioassays were used to evaluate phytotoxicity of simulated oilfield produced water (OPW) before and after treatment in a subsurface-flow, pilot-scale constructed wetland treatment system (CWTS). Responses to untreated and treated OPW were compared among seven plant species, including three monocotyledons: corn (Zea mays), millet (Panicum miliaceum), and sorghum (Sorghum bicolor); and four dicotyledons: lettuce (Lactuca sativa), okra (Abelmoschus esculents), watermelon (Citrullus lanatus), and soybean (Glycine max). Phytotoxicity was greater in untreated OPW than in treated OPW. Exposures to untreated and treated OPW enhanced growth in some plant species (sorghum, millet, okra, and corn) relative to a negative control and reduced growth in other plant species (lettuce, soybean, and watermelon). Early seedling growth parameters indicated that dicotyledons were more sensitive to test waters compared to monocotyledons, suggesting that morphological differences between plant species affected phytotoxicity. Results indicated the following sensitivity scale for plant species: lettuce>soybean>watermelon>corn>okra≈millet>sorghum. Phytotoxicity of the treated OPW to lettuce and soybean, although concentrations of COCs were less than irrigation guideline concentrations, suggests that chemical characterization and comparison to guideline concentrations alone may not be sufficient to evaluate water for use in growing crops. PMID:25409245

  15. Reference genome sequence of the model plant Setaria

    SciTech Connect

    Bennetzen, Jeffrey L; Yang, Xiaohan; Ye, Chuyu; Tuskan, Gerald A

    2012-01-01

    We generated a high-quality reference genome sequence for foxtail millet (Setaria italica). The {approx}400-Mb assembly covers {approx}80% of the genome and >95% of the gene space. The assembly was anchored to a 992-locus genetic map and was annotated by comparison with >1.3 million expressed sequence tag reads. We produced more than 580 million RNA-Seq reads to facilitate expression analyses. We also sequenced Setaria viridis, the ancestral wild relative of S. italica, and identified regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion. The genus Setaria includes natural and cultivated species that demonstrate a wide capacity for adaptation. The genetic basis of this adaptation was investigated by comparing five sequenced grass genomes. We also used the diploid Setaria genome to evaluate the ongoing genome assembly of a related polyploid, switchgrass (Panicum virgatum).

  16. Reference genome sequence of the model plant Setaria

    SciTech Connect

    Bennetzen, Jeffrey L; Schmutz, Jeremy; Wang, Hao; Percifield, Ryan; Hawkins, Jennifer; Pontaroli, Ana C.; Estep, Matt; Feng, Liang; Vaughn, Justin N; Grimwood, Jane; Jenkins, Jerry; Barry, Kerrie; Lindquist, Erika; Hellsten, Uffe; Deshpande, Shweta; Wang, Xuewen; Wu, Xiaomei; Mitros, Therese; Triplett, Jimmy; Yang, Xiaohan; Ye, Chuyu; Mauro-Herrera, Margarita; Wang, Lin; Li, Pinghua; Sharma, Manoj; Sharma, Rita; Ronald, Pamela; Panaud, Olivier; Kellogg, Elizabeth A.; Brutnell, Thomas P.; Doust, Andrew N.; Tuskan, Gerald A; Rokhsar, Daniel; Devos, Katrien M

    2012-01-01

    We generated a high-quality reference genome sequence for foxtail millet (Setaria italica). The ~400-Mb assembly covers ~80% of the genome and >95% of the gene space. The assembly was anchored to a 992-locus genetic map and was annotated by comparison with >1.3 million expressed sequence tag reads. We produced more than 580 million RNA-Seq reads to facilitate expression analyses. We also sequenced Setaria viridis, the ancestral wild relative of S. italica, and identified regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion. The genus Setaria includes natural and cultivated species that demonstrate a wide capacity for adaptation. The genetic basis of this adaptation was investigated by comparing five sequenced grass genomes. We also used the diploid Setaria genome to evaluate the ongoing genome assembly of a related polyploid, switchgrass (Panicum virgatum).

  17. True metabolizable energy of moist-soil seeds

    USGS Publications Warehouse

    Checkett, J.M.; Drobney, R.D.; Petrie, M.J.; Graber, D.A.

    2002-01-01

    Habitat objectives for migrating and wintering waterfowl are often established by converting population energy demands into an equivalent measure of foraging habitat. In some areas, seeds produced from moist-soil plants provide a significant proportion of the energy available to waterfowl. To accurately establish habitat objectives for migrating and wintering waterfowl, managers must estimate seed production from moist-soil plants and have information on metabolizable energy (ME) of moist-soil seeds. Although methods for estimating seed production have been developed, ME has been determined for few natural seeds. We determined true metabolizable energy (TME) of 10 moist-soil seeds commonly consumed by wintering and migrating ducks. TME estimates were similar (P>0.05) for hairy crabgrass (Digitaria sanguinalis; 3.09 kcal/g), little hairy crabgrass (D. ischaemum; 3.10 kcal/g), pigweed (Amaranthus spp.; 2.97 kcal/g), yellow foxtail (Setaria lutescens; 2.88 kcal/g), fall panicum (Panicum dichotomiflorum; 2.75 kcal/g), curly dock (Rumex crispus; 2.68 kcal/g), and wild millet (Echinochloa crusgalli; 2.61 kcal/g), but less (P<0.05) for beakrush (Rynchospora corniculata; 1.86 kcal/g), paspalum (Paspalum laeve; 1.57 kcal/g), and nodding or curltop ladysthumb smartweed (Polygonum lapathifolium; 1.52 kcal/g). TME values determined for moist-soil seeds in this study will allow managers to accurately estimate carrying capacity of waterfowl habitats.

  18. Selective chemical oxidation and depolymerization of switchgrass [corrected] (Panicum virgatum L.) xylan with [corrected] oligosaccharide product analysis by mass spectrometry.

    PubMed

    Bowman, Michael J; Dien, Bruce S; O'Bryan, Patricia J; Sarath, Gautam; Cotta, Michael A

    2011-04-15

    Xylan is a barrier to enzymatic hydrolysis of plant cell walls. It is well accepted that the xylan layer needs to be removed to efficiently hydrolyze cellulose; consequently, pretreatment conditions are (in part) optimized for maximal xylan depolymerization or displacement. Xylan consists of a long chain of β-1,4-linked xylose units substituted with arabinose (typically α-1,3-linked in grasses) and glucuronic acid (α-1,2-linked). Xylan has been proposed to have a structural function in plants and therefore may play a role in determining biomass reactivity to pretreatment. It has been proposed that substitutions along xylan chains are not random and, based upon studies of pericarp xylan, are organized in domains that have specific structural functions. Analysis of intact xylan is problematic because of its chain length (> degree of polymerization (d.p.) 100) and heterogeneous side groups. Traditionally, enzymatic end-point products have been characterized due to the limited products generated. Analysis of resultant arabino-xylo-oligosaccharides by mass spectrometry is complicated by the isobaric pentose sugars that primarily compose xylan. In this report, the variation in pentose ring structures was exploited for selective oxidation of the arabinofuranose primary alcohols followed by acid depolymerization to provide oligosaccharides with modified arabinose branches intact. Switchgrass samples were analyzed by hydrophilic interaction chromatography (HILIC)-liquid chromatography (LC)-mass spectrometry/mass spectrometry (MSMS) and off-line nanospray MS to demonstrate the utility of this chemistry for determination of primary hydroxyl groups on oligosaccharide structures, with potential applications for determining the sequence of arabino-xylo-oligosaccharides present in plant cell wall material.

  19. Switchgrass (Panicum vigratum, L.) delivery to a biorefinery using integrated biomass supply analysis and logistics (IBSAL) model.

    PubMed

    Kumar, Amit; Sokhansanj, Shahab

    2007-03-01

    This study develops cost, energy input and carbon emissions for a number of switchgrass supply options. The Integrated Biomass Supply Analysis and Logistics (IBSAL) model developed at Oak Ridge National Laboratory is used to evaluate the delivery systems. Three biomass collection systems: baling, loafing and ensiling are evaluated. The number and operational performance of equipment are specified to complete collection operations within 120 days of harvest after August 1. Bales are stacked and tarped on the farm side. The transport of biomass from the farm side to a biorefinery takes place over a full year cycle, i.e. 365 days. Supply quantities range from 454 to 4540 dry tonnes/day (500-5000 dry tons/day). Delivered costs to a biorefinery with capacity of 1814 dry tonnes/day (2000 dry tons/day) are: 44-47 dollars/dry tonne for delivered bales (round and square); 37 dollars/dry tonne for delivered loafs (size 2.4 m x 3.6 m x 6 m); 40 dollars/dry tonne for chopped biomass; and 48 dollars/dry tonne for ensiled chops. These costs do not include any payment to the farmers or switchgrass farming cost. Based on the data from literature, the switchgrass farming cost can range from 30 to 36 dollars/dry tonne. These costs would be additional to the switchgrass collection and transportation cost. Switchgrass collection is generally less expensive than collection of straw or corn stover because of the assumed high yield of 11 dry tonnes/ha and a denser biomass. Energy consumption for delivery systems at this capacity ranges from 4.8% to 6.3% of the energy content of switchgrass. Additional 1% of the energy content of switchgrass is consumed in its farming. At 1814 dry tonnes/day (2000 dry tons/day) capacity, greenhouse gas emissions ranges from 75 to 100 kg of CO2/dry tonne of switchgrass delivered.

  20. Switchgrass (Panicum virgatum) fermentation by Clostridium thermocellum and Clostridium saccharoperbutylacetonicum sequential culture in a continuous flow reactor

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The study was conducted to evaluate fermentation by Clostridium thermocellum and C. saccharoperbutylacetonicum in a continuous-flow, high-solids reactor. Liquid medium was continuously flowed through switchgrass (2 mm particle size) at one of three flow rates: 83.33 mL h-1 (2 L d-1), 41.66 mL h-1(1 ...

  1. Enrichment of specific bacterial and eukaryotic microbes in the rhizosphere of switchgrass (Panicum virgatum L.) through root exudates.

    PubMed

    Mao, Yuejian; Li, Xiangzhen; Smyth, Eoghan M; Yannarell, Anthony C; Mackie, Roderick I

    2014-06-01

    Identification of microbes that actively utilize root exudates is essential to understand plant-microbe interactions. To identify active root exudate-utilizing microorganisms associated with switchgrass - a potential bioenergy crop - plants were labelled in situ with (13) CO2 , and 16S and 18S rRNA genes in the (13) C-labelled rhizosphere DNA were pyrosequenced. Multi-pulse labelling for 5 days produced detectable (13) C-DNA, which was well separated from unlabelled DNA. Methylibium from the order Burkholderiales were the most heavily labelled bacteria. Pythium, Auricularia and Galerina were the most heavily labelled eukaryotic microbes. We also identified a Glomus intraradices-like species; Glomus members are arbuscular mycorrhizal fungi that are able to colonize the switchgrass root. All of these heavily labelled microorganisms were also among the most abundant species in the rhizosphere. Species belonging to Methylibium and Pythium were the most heavily labelled and the most abundant bacteria and eukaryotes in the rhizosphere of switchgrass. Our results revealed that nearly all of the dominant rhizosphere bacterial and eukaryotic microbes were able to utilize root exudates. The enrichment of microbial species in the rhizosphere is selective and mostly due to root exudation, which functions as a nutrition source, promoting the growth of these microbes.

  2. Switchgrass (Panicum virgatum) fermentation by Clostridium thermocellum and Clostridium beijerinckii sequential culture: effect of feedstock particle size on gas production

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fermentation of cellulosic biomass can be done in a single step with cellulolytic, solventogenic bacteria, such as Clostridium thermocellum. However, the suite of products is limited in consolidated bioprocessing. Fortunately, the thermophilic nature of C. thermocellum can be exploited in sequenti...

  3. Physiological responses of switchgrass (Panicum virgatum L.) to organic and inorganic amended heavy-metal contaminated chat tailings

    SciTech Connect

    Youngman, A.L.

    1997-12-31

    Study plots established at the Galena subsite of the Cherokee County Superfund Site in Southeastern Kansas by the US Bureau of Mines in 1990 were examined during the summer of 1996 to determine whether physiological criteria could be used to determine suitability of switchgrass for remediation of heavy-metal contaminated substrates. Switchgrass was chosen because it was the most frequently encountered species on these plots. Treatment plots included a treatment control, an organic residue treatment of 89.6 Mg Ha{sup {minus}1} composted cattle manure, and two inorganic fertilizer treatments recommended for either native grass or grass/legume mixtures. Plant response variables were photosynthetic rate, leaf conductance to water vapor, internal concentration of carbon dioxide in leaves, foliar transpiration rate, leaf water-use-efficiency, predawn leaf xylem water potential, and midday leaf xylem water potential. Predawn and midday xylem water potentials were higher for grass/legume inorganic treatment than for the other inorganic treatments. Leaf conductances were lower for organically treated plots than those plots not organically amended and both photosynthesis and transpiration were lower for organically treated plots. Leaf conductances and transpiration were higher for grass/legume treated plots than for plots lacking inorganic treatment. Water-use-efficiency was higher for native grass inorganically treated plots than for other inorganic treatments.

  4. Selective chemical oxidation and depolymerization of switchgrass (Panicum virgatum L.) xylan with oligosaccharide product analysis by mass spectrometry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Xylan is a barrier to enzymatic hydrolysis of plant cell walls. It is well accepted that the xylan layer needs to be removed to efficiently hydrolyze cellulose and consequently pretreatment conditions are in part optimized for maximal xylan depolymerization or displacement. Xylan consists of a long ...

  5. Functional Characterization of NAC and MYB Transcription Factors Involved in Regulation of Biomass Production in Switchgrass (Panicum virgatum)

    PubMed Central

    Zhong, Ruiqin; Yuan, Youxi; Spiekerman, John J.; Guley, Joshua T.; Egbosiuba, Janefrances C.; Ye, Zheng-Hua

    2015-01-01

    Switchgrass is a promising biofuel feedstock due to its high biomass production and low agronomic input requirements. Because the bulk of switchgrass biomass used for biofuel production is lignocellulosic secondary walls, studies on secondary wall biosynthesis and its transcriptional regulation are imperative for designing strategies for genetic improvement of biomass production in switchgrass. Here, we report the identification and functional characterization of a group of switchgrass transcription factors, including several NACs (PvSWNs) and a MYB (PvMYB46A), for their involvement in regulating secondary wall biosynthesis. PvSWNs and PvMYB46A were found to be highly expressed in stems and their expression was closely associated with sclerenchyma cells. Overexpression of PvSWNs and PvMYB46A in Arabidopsis was shown to result in activation of the biosynthetic genes for cellulose, xylan and lignin and ectopic deposition of secondary walls in normally parenchymatous cells. Transactivation and complementation studies demonstrated that PvSWNs were able to activate the SNBE-driven GUS reporter gene and effectively rescue the secondary wall defects in the Arabidopsis snd1 nst1 double mutant, indicating that they are functional orthologs of Arabidopsis SWNs. Furthermore, we showed that PvMYB46A could activate the SMRE-driven GUS reporter gene and complement the Arabidopsis myb46 myb83 double mutant, suggesting that it is a functional ortholog of Arabidopsis MYB46/MYB83. Together, these results indicate that PvSWNs and PvMYB46A are transcriptional switches involved in regulating secondary wall biosynthesis, which provides molecular tools for genetic manipulation of biomass production in switchgrass. PMID:26248336

  6. Growth promotion and colonization of switchgrass (Panicum virgatum) cv. Alamo by bacterial endophyte Burkholderia phytofirmans strain PsJN

    PubMed Central

    2012-01-01

    Background Switchgrass is one of the most promising bioenergy crop candidates for the US. It gives relatively high biomass yield and can grow on marginal lands. However, its yields vary from year to year and from location to location. Thus it is imperative to develop a low input and sustainable switchgrass feedstock production system. One of the most feasible ways to increase biomass yields is to harness benefits of microbial endophytes. Results We demonstrate that one of the most studied plant growth promoting bacterial endophytes, Burkholderia phytofirmans strain PsJN, is able to colonize and significantly promote growth of switchgrass cv. Alamo under in vitro, growth chamber, and greenhouse conditions. In several in vitro experiments, the average fresh weight of PsJN-inoculated plants was approximately 50% higher than non-inoculated plants. When one-month-old seedlings were grown in a growth chamber for 30 days, the PsJN-inoculated Alamo plants had significantly higher shoot and root biomass compared to controls. Biomass yield (dry weight) averaged from five experiments was 54.1% higher in the inoculated treatment compared to non-inoculated control. Similar results were obtained in greenhouse experiments with transplants grown in 4-gallon pots for two months. The inoculated plants exhibited more early tillers and persistent growth vigor with 48.6% higher biomass than controls. We also found that PsJN could significantly promote growth of switchgrass cv. Alamo under sub-optimal conditions. However, PsJN-mediated growth promotion in switchgrass is genotype specific. Conclusions Our results show B. phytofirmans strain PsJN significantly promotes growth of switchgrass cv. Alamo under different conditions, especially in the early growth stages leading to enhanced production of tillers. This phenomenon may benefit switchgrass establishment in the first year. Moreover, PsJN significantly stimulated growth of switchgrass cv. Alamo under sub-optimal conditions, indicating that the use of the beneficial bacterial endophytes may boost switchgrass growth on marginal lands and significantly contribute to the development of a low input and sustainable feedstock production system. PMID:22647367

  7. Confirmation of Pearl Millet-Napiergrass Hybrids Using EST-derived Simple Sequence Repeat (SSR) Markers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Prospects for deploying perennial grasses that are currently considered leading candidates for dedicated energy crops over large acreages are debatable because of several limitations, including vegetative propagation or small seed size, low biomass production during the first growing season, and inc...

  8. Assessment of genetic diversity in napiergrass using cross-species microsatellite markers from pearl millet

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Napiergrass (Pennisetum purpureum Schumacher) is an allotetraploid (2n=4x=28) perennial grass originated from Africa and became the most important grass species due to its high biomass yield, ease of propagation and management, high crude protein content, and drought tolerance. Napiergrass is well k...

  9. Sunn hemp with chicory or pearl millet to minimize gastrointestinal nematode infection in weaned goats

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Predominantly grass forage systems are typically used throughout the southeastern U.S., but are inadequate for nutritional needs of growing goats, and encourage problems with gastrointestinal nematodes (GIN). Browse predominant forages would be preferable, but are not always available. Selection o...

  10. Nutrient Composition of Retail Samples of Sorghum, Millet, and Whole Wheat Flour

    Technology Transfer Automated Retrieval System (TEKTRAN)

    More than 2 million people in the United States have celiac disease, or about 1 in 133 individuals. People who have this disease cannot tolerate gluten, a protein in wheat, rye, and barley. The only treatment for celiac disease is a gluten-free diet. Nutrient profiles were lacking in the USDA Nat...

  11. Determination of vitamins, minerals, and microbial loads of fortified nonalcoholic beverage (kunun zaki) produced from millet.

    PubMed

    Olaoye, Olusegun A; Ubbor, Stella C; Uduma, Ebere A

    2016-01-01

    The objective of this study was to evaluate the possibility of fortifying kunun zaki with tigernut milk extract due to nutritional deficiency of the former. Kunun zaki and tigernut milk extract (TME) were produced using traditional methods, with little modification. They were mixed in respective percentages of 90:10 (KN10), 80:20 (KN20), and 70:30 (KN30) while whole kunun zaki without addition of tigernut milk extract (KN00) served as control. The resulting kunun zaki samples were analyzed for proximate composition, vitamins, minerals, microbial loads, and sensory evaluation. Results showed improvement in thiamine and riboflavin contents of the fortified samples over the unfortified counterparts, with the KN30 sample having highest values of 1.05 and 0.56 mg/kg thiamine and riboflavin, respectively. Minerals were higher in the samples containing TME than their KN00 counterparts; the KN30 sample had highest values of 23.5, 8.8, 148.9, 63.7, 6.7, and 18.6 mg/100 mL for respective Na, Ca, K, Mg, P, and Fe while lowest values were recorded for the KN00 sample. Microbial analysis indicated that total viable bacteria and yeast and molds were in the range 2.2-2.6 and 2.1-2.7 log CFU/g, respectively, while there was no detection of coliforms and Staphylococcus in the samples. The sensory evaluation of the kunun zaki samples indicated that higher mean scores were recorded for samples containing TME than those without it in most of the attributes tested. The KN30 sample was most preferred, having highest mean scores of 7.2, 7.8, 6.9, and 7.4 in the attributes of appearance, flavor, taste, and acceptability, respectively. The study concluded that inclusion of tigernut extract in kunun zaki resulted in improved nutritional and sensory qualities. PMID:26788315

  12. 7 CFR 319.41-3 - Issuance of permits.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... for the entry of broomcorn from any source through ports on the Pacific Coast. (c) For shelled corn and for seeds of other plants listed in § 319.41, and for corn on the cob, green or mature, from...

  13. 7 CFR 319.69 - Notice of quarantine.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... chaff; from all countries. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan grass, napier grass, jobs-tears, teosinte, Polytoca, Sclerachne, Chionachne); all parts, from all countries except... listed in § 319.59-2 of this part. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan...

  14. 7 CFR 319.69 - Notice of quarantine.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... chaff; from all countries. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan grass, napier grass, jobs-tears, teosinte, Polytoca, Sclerachne, Chionachne); all parts, from all countries except... listed in § 319.59-2 of this part. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan...

  15. 7 CFR 319.69 - Notice of quarantine.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... chaff; from all countries. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan grass, napier grass, jobs-tears, teosinte, Polytoca, Sclerachne, Chionachne); all parts, from all countries except... listed in § 319.59-2 of this part. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan...

  16. 7 CFR 319.69 - Notice of quarantine.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... chaff; from all countries. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan grass, napier grass, jobs-tears, teosinte, Polytoca, Sclerachne, Chionachne); all parts, from all countries except....59-2 of this part. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan grass, napier...

  17. 7 CFR 319.69 - Notice of quarantine.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... chaff; from all countries. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan grass, napier grass, jobs-tears, teosinte, Polytoca, Sclerachne, Chionachne); all parts, from all countries except... listed in § 319.59-2 of this part. (2) Corn and allied plants (maize, sorghum, broomcorn, Sudan...

  18. 7 CFR 319.41-3 - Issuance of permits.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related.... (c) For shelled corn and for seeds of other plants listed in § 319.41, and for corn on the cob,...

  19. 7 CFR 319.41-3 - Issuance of permits.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related.... (c) For shelled corn and for seeds of other plants listed in § 319.41, and for corn on the cob,...

  20. 7 CFR 319.41-3 - Issuance of permits.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related.... (c) For shelled corn and for seeds of other plants listed in § 319.41, and for corn on the cob,...

  1. 7 CFR 319.41-3 - Issuance of permits.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related.... (c) For shelled corn and for seeds of other plants listed in § 319.41, and for corn on the cob,...

  2. Genetic Diversity of Namibian Pennisetum glaucum (L.) R. BR. (Pearl Millet) Landraces Analyzed by SSR and Morphological Markers.

    PubMed

    McBenedict, Billy; Chimwamurombe, Percy; Kwembeya, Ezekeil; Maggs-Kölling, Gillian

    2016-01-01

    Current Pennisetum glaucum (L.) R. BR. cultivars in Namibia have overall poor performance posing a threat to the nation's food security because this crop is staple for over 70% of the Namibian population. The crop suffers from undesirable production traits such as susceptibility to diseases, low yield, and prolonged reproductive cycle. This study aimed to understand the genetic diversity of the crop in Namibia by simple sequence repeats (SSRs) and morphology analysis. A total of 1441 genotypes were collected from the National Gene Bank representing all the Namibian landraces. A sample of 96 genotypes was further analyzed by SSR using Shannon-Wiener diversity index and revealed a value of 0.45 indicating low genetic diversity. Ordination using Principal Coordinate Analysis (PCoA) on SSR data confirmed clusters generated by UPGMA for the 96 P. glaucum accessions. UPGMA phenograms of 29 morphological characterized genotypes were generated for SSR and morphology data and the two trees revealed 78% resemblance. Lodging susceptibility, tillering attitude, spike density, fodder yield potential, early vigour, and spike shape were the phenotypic characters upon which some clusters were based in both datasets. It is recommended that efforts should be made to widen the current gene pool in Namibia. PMID:27433479

  3. Fecal bacterial losses in runoff from conventional and no-till pearl millet fertilized with broiler litter

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Georgia farmers are increasing preemergence applications of soil residual herbicides to control glyphosate resistant weeds. To be effective these herbicides must be activated by post-application irrigation. Broiler litter is often applied to fields before these herbicides. This wetting-in practice ...

  4. Crossing the Gap between Indigenous Worldview and Western Science: Millet Festival as a Bridge in the Teaching Module

    ERIC Educational Resources Information Center

    Chiang, Chia-Ling; Lee, Huei

    2015-01-01

    The worldview within indigenous people's traditional knowledge and western science can be a world of difference. In order to help indigenous students cross the gap and develop a sense of cultural identification. Taking Bunun, one of the Taiwanese indigenous tribes, as our subject, this study aims to develop a teaching module through Bunun's Millet…

  5. Genetic Diversity of Namibian Pennisetum glaucum (L.) R. BR. (Pearl Millet) Landraces Analyzed by SSR and Morphological Markers.

    PubMed

    McBenedict, Billy; Chimwamurombe, Percy; Kwembeya, Ezekeil; Maggs-Kölling, Gillian

    2016-01-01

    Current Pennisetum glaucum (L.) R. BR. cultivars in Namibia have overall poor performance posing a threat to the nation's food security because this crop is staple for over 70% of the Namibian population. The crop suffers from undesirable production traits such as susceptibility to diseases, low yield, and prolonged reproductive cycle. This study aimed to understand the genetic diversity of the crop in Namibia by simple sequence repeats (SSRs) and morphology analysis. A total of 1441 genotypes were collected from the National Gene Bank representing all the Namibian landraces. A sample of 96 genotypes was further analyzed by SSR using Shannon-Wiener diversity index and revealed a value of 0.45 indicating low genetic diversity. Ordination using Principal Coordinate Analysis (PCoA) on SSR data confirmed clusters generated by UPGMA for the 96 P. glaucum accessions. UPGMA phenograms of 29 morphological characterized genotypes were generated for SSR and morphology data and the two trees revealed 78% resemblance. Lodging susceptibility, tillering attitude, spike density, fodder yield potential, early vigour, and spike shape were the phenotypic characters upon which some clusters were based in both datasets. It is recommended that efforts should be made to widen the current gene pool in Namibia.

  6. Genetic Diversity of Namibian Pennisetum glaucum (L.) R. BR. (Pearl Millet) Landraces Analyzed by SSR and Morphological Markers

    PubMed Central

    McBenedict, Billy; Chimwamurombe, Percy; Kwembeya, Ezekeil; Maggs-Kölling, Gillian

    2016-01-01

    Current Pennisetum glaucum (L.) R. BR. cultivars in Namibia have overall poor performance posing a threat to the nation's food security because this crop is staple for over 70% of the Namibian population. The crop suffers from undesirable production traits such as susceptibility to diseases, low yield, and prolonged reproductive cycle. This study aimed to understand the genetic diversity of the crop in Namibia by simple sequence repeats (SSRs) and morphology analysis. A total of 1441 genotypes were collected from the National Gene Bank representing all the Namibian landraces. A sample of 96 genotypes was further analyzed by SSR using Shannon-Wiener diversity index and revealed a value of 0.45 indicating low genetic diversity. Ordination using Principal Coordinate Analysis (PCoA) on SSR data confirmed clusters generated by UPGMA for the 96 P. glaucum accessions. UPGMA phenograms of 29 morphological characterized genotypes were generated for SSR and morphology data and the two trees revealed 78% resemblance. Lodging susceptibility, tillering attitude, spike density, fodder yield potential, early vigour, and spike shape were the phenotypic characters upon which some clusters were based in both datasets. It is recommended that efforts should be made to widen the current gene pool in Namibia. PMID:27433479

  7. Model optimization of cadmium and accumulation in switchgrass (Panicum virgatum L.): potential use for ecological phytoremediation in Cd-contaminated soils.

    PubMed

    Wang, Quanzhen; Gu, Muyu; Ma, Xiaomin; Zhang, Hongjuan; Wang, Yafang; Cui, Jian; Gao, Wei; Gui, Jing

    2015-11-01

    Soil pollution with heavy metals is an increasingly serious threat to the environment, food security, and human health. Therefore, it is urgent to develop economic and highly efficient soil restoration technology for environmental improvement; phytoremediation is an option that is safe, has low cost, and is environmentally friendly. However, in selecting hyperaccumulators or tolerant plants, theories and operation technologies for optimal restoration should be satisfied. In this study, the switchgrass growth response and performance of phytoextraction under the coupling effect of Cd and pH were investigated by evaluating seed germination, seedling growth, and the Cd content in the plant to evaluate the potential use of switchgrass as a phytoremediation plant in cadmium contaminated soil. This study conducted three sets of independent experiments with five levels of Cd concentrations, including two orthogonal matrix designs of combining Cd with pH values. The results showed that switchgrass was germinated well under all treatments (Cd concentration of 0-500 μM), but the seedling growth was significantly affected by Cd and pH, as shown by multivariate regression analyses. Hormesis was found during the growth of switchgrass plants exposed to low Cd concentrations under hydroponic conditions, and switchgrass plants were capable of developing with a Cd concentration of 100-175 μM and pH of 4.1-5.9. Mild acidic conditions can enhance the ability of Cd to accumulate in switchgrass. Switchgrass was moderately tolerant to Cd and may be used as a phytoremediation plant for Cd-contaminated soils in the future. Our results also suggest that hormetic effects should be taken into consideration in the phytoremediation of Cd-contaminated soils. We discuss the physiological and biochemical mechanisms contributing to the effective application of the plant for the phytoremediation of Cd-contaminated soils. PMID:26092360

  8. The use of marker-data transformations to account for linkage disequilibrium in genomic selection: a case study in switchgrass (Panicum virgatum L.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genomic selection (GS) is an attractive technology to generate rapid genetic gains, particularly in perennial grass species like switchgrass, where phenotyping generally requires at least two years of field trial. In this study, we empirically assessed prediction procedures for GS in two different p...

  9. Effect of varying ratios of produced water and municipal water on soil characteristics, plant biomass, and secondary metabolites of Artemisia annua and Panicum virgatum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Coal-bed natural gas production in the U.S. in 2012 was 1,655 billion cubic feet (bcf). A by-product of this production is co-produced water, which is categorized as a waste product by the Environmental Protection Agency. The effects of varying concentrations of coal-bed methane (produced) water wer...

  10. Model optimization of cadmium and accumulation in switchgrass (Panicum virgatum L.): potential use for ecological phytoremediation in Cd-contaminated soils.

    PubMed

    Wang, Quanzhen; Gu, Muyu; Ma, Xiaomin; Zhang, Hongjuan; Wang, Yafang; Cui, Jian; Gao, Wei; Gui, Jing

    2015-11-01

    Soil pollution with heavy metals is an increasingly serious threat to the environment, food security, and human health. Therefore, it is urgent to develop economic and highly efficient soil restoration technology for environmental improvement; phytoremediation is an option that is safe, has low cost, and is environmentally friendly. However, in selecting hyperaccumulators or tolerant plants, theories and operation technologies for optimal restoration should be satisfied. In this study, the switchgrass growth response and performance of phytoextraction under the coupling effect of Cd and pH were investigated by evaluating seed germination, seedling growth, and the Cd content in the plant to evaluate the potential use of switchgrass as a phytoremediation plant in cadmium contaminated soil. This study conducted three sets of independent experiments with five levels of Cd concentrations, including two orthogonal matrix designs of combining Cd with pH values. The results showed that switchgrass was germinated well under all treatments (Cd concentration of 0-500 μM), but the seedling growth was significantly affected by Cd and pH, as shown by multivariate regression analyses. Hormesis was found during the growth of switchgrass plants exposed to low Cd concentrations under hydroponic conditions, and switchgrass plants were capable of developing with a Cd concentration of 100-175 μM and pH of 4.1-5.9. Mild acidic conditions can enhance the ability of Cd to accumulate in switchgrass. Switchgrass was moderately tolerant to Cd and may be used as a phytoremediation plant for Cd-contaminated soils in the future. Our results also suggest that hormetic effects should be taken into consideration in the phytoremediation of Cd-contaminated soils. We discuss the physiological and biochemical mechanisms contributing to the effective application of the plant for the phytoremediation of Cd-contaminated soils.

  11. Herbicide activity of monosulfuron and its mode of action.

    PubMed

    Fan, Zhi-Jin; Ai, Ying-Wei; Qian, Chuan-Fan; Li, Zheng-Ming

    2005-01-01

    Monosulfuron was developed for weed control in the field of wheat (Triticum, aestivum L.) and millet (Panicum miliaceum L.) with the application rate ranging from 15 to 60 g ai/hm2. Herbicidal activity of monosulfuron was evaluated systematically by bioassay using maize (Zea mays L.) taproot as indicator and weed fresh weight of Acalypha australis L. and Echinochloa phyllopogon. Maize CAU 3138 was the most tolerant cultivars to monosulfuron with IC50 (concentration of 50% inhibition) of 85 microg/kg, Yedan 13 was one of the most sensitive cultivars to monosulfuron with IC50 of 6.4 microg/kg. Monosulfuron inhibited the growth of Acalypha australis L. strongly comparing with that of Echinochloa phyllopogon. Monosulfuron was a good acetolactate synthase (ALS) inhibitor in vitro, the I50 (50% of inhibition) of monosulfuron, chlorsulfuron, tribenuron-methyl and nicosulfuron for CAU 3138 were 32, 2, 19 and 26 nmol/L respectively, for Yedan 13 the I50 were 15, 3, 17 and 65 nmol/L respectively. In vivo ALS inhibition occurred only in higher concentration of 4 sulfonylurea herbicide tested. Comparison study of this test indicated that the mode of action of monosulfuron was the same as that of other sulfonylurea herbicides such as chlorsulfuron, tribenuron-methyl and nicosulfuron, they were all inhibitors targeted at the ALS. PMID:16083111

  12. Synthesis of the low molecular weight heat shock proteins in plants

    SciTech Connect

    Mansfield, M.A.; Key, J.L. )

    1987-08-01

    Heat shock of living tissue induces the synthesis of a unique group of proteins, the heat shock proteins. In plants, the major group of heat shock proteins has a molecular mass of 15 to 25 kilodaltons. Accumulation to these proteins to stainable levels has been reported in only a few species. To examine accumulation of the low molecular weight heat shock proteins in a broader range of species, two-dimensional electrophoresis was used to resolve total protein from the following species: soybean (Glycine max L. Merr., var Wayne), pea (Pisum sativum L., var Early Alaska), sunflower (Helianthus annuus L.), wheat (Triticum asetivum L.), rice (Oryza sativa L., cv IR-36), maize (Zea mays L.), pearl millet (Pennisetum americanum L. Leeke, line 23DB), and Panicum miliaceum L. When identified by both silver staining and incorporation of radiolabel, a diverse array of low molecular weight heat shock proteins was synthesized in each of these species. These proteins accumulated to significant levels after three hours of heat shock but exhibited considerable heterogeneity in isoelectric point, molecular weight, stainability, and radiolabel incorporation. Although most appeared to be synthesized only during heat shock, some were detectable at low levels in control tissue. Compared to the monocots, a higher proportion of low molecular weight heat shock proteins was detectable in control tissues from dicots.

  13. The Effect of Biochar and Its Interaction with the Earthworm Pontoscolex corethrurus on Soil Microbial Community Structure in Tropical Soils

    PubMed Central

    Paz-Ferreiro, Jorge; Liang, Chenfei; Fu, Shenglei; Mendez, Ana; Gasco, Gabriel

    2015-01-01

    Biochar effects on soil microbial abundance and community structure are keys for understanding the biogeochemical cycling of nutrients and organic matter turnover, but are poorly understood, in particular in tropical areas. We conducted a greenhouse experiment in which we added biochars produced from four different feedstocks [sewage sludge (B1), deinking sewage sludge (B2), Miscanthus (B3) and pine wood (B4)] at a rate of 3% (w/w) to two tropical soils (an Acrisol and a Ferralsol) planted with proso millet (Panicum milliaceum L.). The interactive effect of the addition of earthworms was also addressed. For this purpose we utilized soil samples from pots with or without the earthworm Pontoscolex corethrurus, which is a ubiquitous earthworm in tropical soils. Phospholipid fatty acid (PLFA) measurements showed that biochar type, soil type and the presence of earthworms significantly affected soil microbial community size and structure. In general, biochar addition affected fungal but not bacterial populations. Overall, biochars rich in ash (B1 and B2) resulted in a marked increase in the fungi to bacteria ratio, while this ratio was unaltered after addition of biochars with a high fixed carbon content (B3 and B4). Our study remarked the contrasting effect that both, biochar prepared from different materials and macrofauna, can have on soil microbial community. Such changes might end up with ecosystem-level effects. PMID:25898344

  14. The effect of biochar and its interaction with the earthworm Pontoscolex corethrurus on soil microbial community structure in tropical soils.

    PubMed

    Paz-Ferreiro, Jorge; Liang, Chenfei; Fu, Shenglei; Mendez, Ana; Gasco, Gabriel

    2015-01-01

    Biochar effects on soil microbial abundance and community structure are keys for understanding the biogeochemical cycling of nutrients and organic matter turnover, but are poorly understood, in particular in tropical areas. We conducted a greenhouse experiment in which we added biochars produced from four different feedstocks [sewage sludge (B1), deinking sewage sludge (B2), Miscanthus (B3) and pine wood (B4)] at a rate of 3% (w/w) to two tropical soils (an Acrisol and a Ferralsol) planted with proso millet (Panicum milliaceum L.). The interactive effect of the addition of earthworms was also addressed. For this purpose we utilized soil samples from pots with or without the earthworm Pontoscolex corethrurus, which is a ubiquitous earthworm in tropical soils. Phospholipid fatty acid (PLFA) measurements showed that biochar type, soil type and the presence of earthworms significantly affected soil microbial community size and structure. In general, biochar addition affected fungal but not bacterial populations. Overall, biochars rich in ash (B1 and B2) resulted in a marked increase in the fungi to bacteria ratio, while this ratio was unaltered after addition of biochars with a high fixed carbon content (B3 and B4). Our study remarked the contrasting effect that both, biochar prepared from different materials and macrofauna, can have on soil microbial community. Such changes might end up with ecosystem-level effects.

  15. Ecosystem services from keystone species: diversionary seeding and seed-caching desert rodents can enhance Indian ricegrass seedling establishment

    USGS Publications Warehouse

    Longland, William; Ostoja, Steven M.

    2013-01-01

    Seeds of Indian ricegrass (Achnatherum hymenoides), a native bunchgrass common to sandy soils on arid western rangelands, are naturally dispersed by seed-caching rodent species, particularly Dipodomys spp. (kangaroo rats). These animals cache large quantities of seeds when mature seeds are available on or beneath plants and recover most of their caches for consumption during the remainder of the year. Unrecovered seeds in caches account for the vast majority of Indian ricegrass seedling recruitment. We applied three different densities of white millet (Panicum miliaceum) seeds as “diversionary foods” to plots at three Great Basin study sites in an attempt to reduce rodents' over-winter cache recovery so that more Indian ricegrass seeds would remain in soil seedbanks and potentially establish new seedlings. One year after diversionary seed application, a moderate level of Indian ricegrass seedling recruitment occurred at two of our study sites in western Nevada, although there was no recruitment at the third site in eastern California. At both Nevada sites, the number of Indian ricegrass seedlings sampled along transects was significantly greater on all plots treated with diversionary seeds than on non-seeded control plots. However, the density of diversionary seeds applied to plots had a marginally non-significant effect on seedling recruitment, and it was not correlated with recruitment patterns among plots. Results suggest that application of a diversionary seed type that is preferred by seed-caching rodents provides a promising passive restoration strategy for target plant species that are dispersed by these rodents.

  16. The effect of biochar and its interaction with the earthworm Pontoscolex corethrurus on soil microbial community structure in tropical soils.

    PubMed

    Paz-Ferreiro, Jorge; Liang, Chenfei; Fu, Shenglei; Mendez, Ana; Gasco, Gabriel

    2015-01-01

    Biochar effects on soil microbial abundance and community structure are keys for understanding the biogeochemical cycling of nutrients and organic matter turnover, but are poorly understood, in particular in tropical areas. We conducted a greenhouse experiment in which we added biochars produced from four different feedstocks [sewage sludge (B1), deinking sewage sludge (B2), Miscanthus (B3) and pine wood (B4)] at a rate of 3% (w/w) to two tropical soils (an Acrisol and a Ferralsol) planted with proso millet (Panicum milliaceum L.). The interactive effect of the addition of earthworms was also addressed. For this purpose we utilized soil samples from pots with or without the earthworm Pontoscolex corethrurus, which is a ubiquitous earthworm in tropical soils. Phospholipid fatty acid (PLFA) measurements showed that biochar type, soil type and the presence of earthworms significantly affected soil microbial community size and structure. In general, biochar addition affected fungal but not bacterial populations. Overall, biochars rich in ash (B1 and B2) resulted in a marked increase in the fungi to bacteria ratio, while this ratio was unaltered after addition of biochars with a high fixed carbon content (B3 and B4). Our study remarked the contrasting effect that both, biochar prepared from different materials and macrofauna, can have on soil microbial community. Such changes might end up with ecosystem-level effects. PMID:25898344

  17. Reproduction of Pratylenchus penetrans on 24 Common Weeds in Potato Fields in Québec

    PubMed Central

    Bélair, G.; Dauphinais, N.; Benoit, D. L.; Fournier, Y.

    2007-01-01

    Twenty-four weeds commonly found in commercial potato fields in Quebec were evaluated for their host suitability to the root-lesion nematode, Pratylenchus penetrans, under greenhouse conditions. Brown mustard (Brassica juncea) and rye (Secale cereale) were included as susceptible controls and forage pearl millet hyb. CFPM 101 (Pennisetum glaucum) as a poor host. Pratylenchus penetrans multiplied well on 22 of the 24 weed species tested (Pf/Pi ≥ rye or brown mustard). Cirsium arvense, Leucanthemum vulgare and Matricaria discoida were classified as very good hosts with a Pf/Pi ranging from 1.60 to 2.54, while Ambrosia artemisiifolia and Cyperus esculentus were classified as poor hosts with a Pf/Pi from 0.01 to 0.15. Amaranthus powellii, A. retrqflexus, Raphanus raphanistrum, Rorippa palustris, Cerastium fontanum, Spergula arvensis, Stellaria media, Chenopodium album, Vicia cracca, Elytrigia repens, Digitaria ischaemum, Echinochloa crusgalli, Panicum capillare, Setaria faberii, S. pumila, S. viridis, Polygonum convolvulus, P. scabrum and P. persicaria were intermediate hosts with Pf/Pi values ranging from 0.33 to 2.01. The plant species and the botanical family had a significant impact on nematode reproduction. The Brassicaceae family resulted in the greatest reproduction of P. penetrans, and the Cyperaceae resulted in the least. The plant life-cycle (annual vs. perennial) had no impact on nematode population. PMID:19259506

  18. Reproduction of Pratylenchus penetrans on 24 Common Weeds in Potato Fields in Québec.

    PubMed

    Bélair, G; Dauphinais, N; Benoit, D L; Fournier, Y

    2007-12-01

    Twenty-four weeds commonly found in commercial potato fields in Quebec were evaluated for their host suitability to the root-lesion nematode, Pratylenchus penetrans, under greenhouse conditions. Brown mustard (Brassica juncea) and rye (Secale cereale) were included as susceptible controls and forage pearl millet hyb. CFPM 101 (Pennisetum glaucum) as a poor host. Pratylenchus penetrans multiplied well on 22 of the 24 weed species tested (Pf/Pi >/= rye or brown mustard). Cirsium arvense, Leucanthemum vulgare and Matricaria discoida were classified as very good hosts with a Pf/Pi ranging from 1.60 to 2.54, while Ambrosia artemisiifolia and Cyperus esculentus were classified as poor hosts with a Pf/Pi from 0.01 to 0.15. Amaranthus powellii, A. retrqflexus, Raphanus raphanistrum, Rorippa palustris, Cerastium fontanum, Spergula arvensis, Stellaria media, Chenopodium album, Vicia cracca, Elytrigia repens, Digitaria ischaemum, Echinochloa crusgalli, Panicum capillare, Setaria faberii, S. pumila, S. viridis, Polygonum convolvulus, P. scabrum and P. persicaria were intermediate hosts with Pf/Pi values ranging from 0.33 to 2.01. The plant species and the botanical family had a significant impact on nematode reproduction. The Brassicaceae family resulted in the greatest reproduction of P. penetrans, and the Cyperaceae resulted in the least. The plant life-cycle (annual vs. perennial) had no impact on nematode population. PMID:19259506

  19. Contribution of NAD 2D-NMR in liquid crystals to the determination of hydrogen isotope profile of methyl groups in miliacin

    NASA Astrophysics Data System (ADS)

    Berdagué, Philippe; Lesot, Philippe; Jacob, Jérémy; Terwilliger, Valery J.; Le Milbeau, Claude

    2016-01-01

    The hydrogen isotopic composition (δD or (D/H) value) of molecular biomarkers preserved in sedimentary archives is increasingly used to provide clues about the evolution of past climatic conditions. The rationale is that intact biomarkers retain isotopic information related to the climatic conditions that prevailed at the time of their synthesis. Some of these biomarkers may be degraded during diagenesis, however. The extent to which these degradations alter the original δD value of the source biomarker is presently debated and the capacity to resolve this question by determination of compound-specific δD values alone is limited. The "bulk" or "global" δD value of any molecule is in fact a composite of δD values at each site within this molecule (δDi or (D/H)i with i = number of hydrogen/deuterium atoms in the considered molecule). Determination of this site-specific δDi value in biomarkers could not only yield outstanding paleoenvironmental information but also help forecast the impacts of diagenesis and define essential steps in biosynthetic pathways. This task is analytically challenging. Here, we examined the capabilities of natural abundance deuterium 2D-NMR (NAD 2D-NMR) using homopolypeptide liquid crystals as an NMR solvent to: (i) analyze the NAD spectra of biomakers; (ii) determine the site-specific distribution of hydrogen in the nine methyl groups (δDMei with i = 23-31) of miliacin, a pentacyclic triterpene of the amyrin family and key biomarker for broomcorn millet in sedimentary archives. Relative (D/H)Mei values were established by anisotropic NAD 2D-NMR. Then absolute δDMei values were obtained by determining δDMei value of the methoxy group of miliacin using two independent approaches: isotropic NAD NMR (SNIF-NMR™) and GC-irMS. The resulting isotope profile for miliacin shows, for the first time, large variations in δDMei values that can directly be explained by biosynthetic processes. This approach has also the potential to permit

  20. Assessment of genetic diversity in napiergrass (Pennisetum purpureum Schum.) using microsatellite, single-nucleotide polymorphism, and insertion-deletion markers from pearl millet (Pennisetum glaucum [L] R. Br.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Napiergrass (Pennisetum purpureum Schumacher) is a well established perennial fodder crop of African origin and is a potential bio-energy crop. The absence of genome sequence information in napiergrass has become an obstacle in the development of sequence specific markers which often involves a high...

  1. Gene mapping and functional analysis of the novel leaf color gene SiYGL1 in foxtail millet [Setaria italica (L.) P. Beauv].

    PubMed

    Li, Wen; Tang, Sha; Zhang, Shuo; Shan, Jianguo; Tang, Chanjuan; Chen, Qiannan; Jia, Guanqing; Han, Yuanhuai; Zhi, Hui; Diao, Xianmin

    2016-05-01

    Setaria italica and its wild ancestor Setaria viridis are emerging as model systems for genetics and functional genomics research. However, few systematic gene mapping or functional analyses have been reported in these promising C4 models. We herein isolated the yellow-green leaf mutant (siygl1) in S. italica using forward genetics approaches. Map-based cloning revealed that SiYGL1, which is a recessive nuclear gene encoding a magnesium-chelatase D subunit (CHLD), is responsible for the mutant phenotype. A single Phe to Leu amino acid change occurring near the ATPase-conserved domain resulted in decreased chlorophyll (Chl) accumulation and modified chloroplast ultrastructure. However, the mutation enhanced the light-use efficiency of the siygl1 mutant, suggesting that the mutated CHLD protein does not completely lose its original activity, but instead, gains novel features. A transcriptional analysis of Chl a oxygenase revealed that there is a strong negative feedback control of Chl b biosynthesis in S. italica. The SiYGL1 mRNA was expressed in all examined tissues, with higher expression observed in the leaves. Comparison of gene expression profiles in wild-type and siygl1 mutant plants indicated that SiYGL1 regulates a subset of genes involved in photosynthesis (rbcL and LHCB1), thylakoid development (DEG2) and chloroplast signaling (SRP54CP). These results provide information regarding the mutant phenotype at the transcriptional level. This study demonstrated that the genetic material of a Setaria species could be ideal for gene discovery investigations using forward genetics approaches and may help to explain the molecular mechanisms associated with leaf color variation. PMID:26559175

  2. Low-cost solution processed nano millet like structure CoS2 film superior to pt as counter electrode for quantum dot sensitized solar cells

    NASA Astrophysics Data System (ADS)

    Rao, S. Srinivasa; Punnosse, Dinah; Kim, Soo-Kyoung; Kim, Hee-Je

    2015-05-01

    Cobalt Sulfide (CoS2) counter electrodes (CE) with uniform size distribution were obtained on fluorine-doped tin oxide (FTO) substrate as counter electrodes for polysulfide redox electrolyte in CdS/CdSe/ ZnS quantum dot-sensitized solar cells (QDSSCs) by chemical bath deposition (CBD) technique. In this study, we optimized the cobalt source, deposition temperature and time in the preparation of CoS2 thin film to achieve greater conversion efficiency with strong adhesion on FTO. Relative to the platinum (Pt) electrodes, the CoS2 electrode shows a higher catalytic activity, faster electron transport and lower chargetransfer resistance, which can play a role in rendering higher power conversion efficiency. As a result, QDSSCs with the optimized CoS2 CE achieved a higher short-circuit current density of 13.08 mA cm-2, open-circuit voltage of 0.47 V, fill factor of 0.34 and overall photovoltaic conversion efficiency of 2.17% obtained under one sun illumination (100 mW cm-2). Therefore, CoS2 CE can be used as a promising CE in QDSSCs with efficiency exceeding that of high-cost Pt-based cells (1.64%). [Figure not available: see fulltext.

  3. The validation of an analytical method for sulfentrazone residue determination in soil using liquid chromatography and a comparison of chromatographic sensitivity to millet as a bioindicator species.

    PubMed

    de Oliveira, Marcelo Antonio; Pires, Fábio Ribeiro; Ferraço, Mariana; Belo, Alessandra Ferreira

    2014-01-01

    Commonly used herbicides, such as sulfentrazone, pose the risk of soil contamination due to their persistence, bioaccumulation and toxicity. Phytoremediation by green manure species has been tested using biomarkers, but analytical data are now required to confirm the extraction of sulfentrazone from soil. Thus, the present work was carried out to analyze sulfentrazone residues in soil based on liquid chromatography with a comparison of these values to the sensitivity of the bioindicator Pennisetum glaucum. The soil samples were obtained after cultivation of Crotalaria juncea and Canavalia ensiformis at four seeding densities and with three doses of sulfentrazone. The seedlings were collected into pots, at two different depths, after 75 days of phytoremediator sowing and then were used to determine the herbicide persistence in the soil. A bioassay with P. glaucum was carried out in the same pot. High-performance liquid chromatography (HPLC), using UV-diode array detection (HPLC/UV-DAD), was used to determine the herbicide residues. The HPLC determination was optimized and validated according to the parameters of precision, accuracy, linearity, limit of detection and quantification, robustness and specificity. The bioindicator P. glaucum was more sensitive to sulfentrazone than residue determination by HPLC. Changes in sulfentrazone concentration caused by green manure phytoremediation were accurately identified by the bioindicator. However, a true correlation between the size of the species and the analyte content was not identified.

  4. Gene mapping and functional analysis of the novel leaf color gene SiYGL1 in foxtail millet [Setaria italica (L.) P. Beauv].

    PubMed

    Li, Wen; Tang, Sha; Zhang, Shuo; Shan, Jianguo; Tang, Chanjuan; Chen, Qiannan; Jia, Guanqing; Han, Yuanhuai; Zhi, Hui; Diao, Xianmin

    2016-05-01

    Setaria italica and its wild ancestor Setaria viridis are emerging as model systems for genetics and functional genomics research. However, few systematic gene mapping or functional analyses have been reported in these promising C4 models. We herein isolated the yellow-green leaf mutant (siygl1) in S. italica using forward genetics approaches. Map-based cloning revealed that SiYGL1, which is a recessive nuclear gene encoding a magnesium-chelatase D subunit (CHLD), is responsible for the mutant phenotype. A single Phe to Leu amino acid change occurring near the ATPase-conserved domain resulted in decreased chlorophyll (Chl) accumulation and modified chloroplast ultrastructure. However, the mutation enhanced the light-use efficiency of the siygl1 mutant, suggesting that the mutated CHLD protein does not completely lose its original activity, but instead, gains novel features. A transcriptional analysis of Chl a oxygenase revealed that there is a strong negative feedback control of Chl b biosynthesis in S. italica. The SiYGL1 mRNA was expressed in all examined tissues, with higher expression observed in the leaves. Comparison of gene expression profiles in wild-type and siygl1 mutant plants indicated that SiYGL1 regulates a subset of genes involved in photosynthesis (rbcL and LHCB1), thylakoid development (DEG2) and chloroplast signaling (SRP54CP). These results provide information regarding the mutant phenotype at the transcriptional level. This study demonstrated that the genetic material of a Setaria species could be ideal for gene discovery investigations using forward genetics approaches and may help to explain the molecular mechanisms associated with leaf color variation.

  5. Quantitative Profiling of Feruloylated Arabinoxylan Side-Chains from Graminaceous Cell Walls

    PubMed Central

    Schendel, Rachel R.; Meyer, Marleen R.; Bunzel, Mirko

    2016-01-01

    Graminaceous arabinoxylans are distinguished by decoration with feruloylated monosaccharidic and oligosaccharidic side-chains. Although it is hypothesized that structural complexity and abundance of these feruloylated arabinoxylan side-chains may contribute, among other factors, to resistance of plant cell walls to enzymatic degradation, quantitative profiling approaches for these structural units in plant cell wall materials have not been described yet. Here we report the development and application of a rapid and robust method enabling the quantitative comparison of feruloylated side-chain profiles in cell wall materials following mildly acidic hydrolysis, C18-solid phase extraction (SPE), reduction under aprotic conditions, and liquid chromatography with diode-array detection/mass spectrometry (LC-DAD/MS) separation and detection. The method was applied to the insoluble fiber/cell wall materials isolated from 12 whole grains: wild rice (Zizania aquatica L.), long-grain brown rice (Oryza sativa L.), rye (Secale cereale L.), kamut (Triticum turanicum Jakubz.), wheat (Triticum aestivum L.), spelt (Triticum spelta L.), intermediate wheatgrass (Thinopyrum intermedium), maize (Zea mays L.), popcorn (Zea mays L. var. everta), oat (Avena sativa L.) (dehulled), barley (Hordeum vulgare L.) (dehulled), and proso millet (Panicum miliaceum L.). Between 51 and 96% of the total esterified monomeric ferulates were represented in the quantified compounds captured in the feruloylated side-chain profiles, which confirms the significance of these structures to the global arabinoxylan structure in terms of quantity. The method provided new structural insights into cereal grain arabinoxylans, in particular, that the structural moiety α-l-galactopyranosyl-(1→2)-β-d-xylopyranosyl-(1→2)-5-O-trans-feruloyl-l-arabinofuranose (FAXG), which had previously only been described in maize, is ubiquitous to cereal grains. PMID:26834763

  6. Review of anthraquinone applications for pest management and agricultural crop protection.

    PubMed

    DeLiberto, Shelagh T; Werner, Scott J

    2016-10-01

    We have reviewed published anthraquinone applications for international pest management and agricultural crop protection from 1943 to 2016. Anthraquinone (AQ) is commonly found in dyes, pigments and many plants and organisms. Avian repellent research with AQ began in the 1940s. In the context of pest management, AQ is currently used as a chemical repellent, perch deterrent, insecticide and feeding deterrent in many wild birds, and in some mammals, insects and fishes. Criteria for evaluation of effective chemical repellents include efficacy, potential for wildlife hazards, phytotoxicity and environmental persistence. As a biopesticide, AQ often meets these criteria of efficacy for the non-lethal management of agricultural depredation caused by wildlife. We summarize published applications of AQ for the protection of newly planted and maturing crops from pest birds. Conventional applications of AQ-based repellents include preplant seed treatments [e.g. corn (Zea mays L.), rice (Oryza sativa L.), sunflower (Helianthus annuus L.), wheat (Triticum spp.), millet (Panicum spp.), sorghum (Sorghum bicolor L.), pelletized feed and forest tree species] and foliar applications for rice, sunflower, lettuce (Lactuca sativa L.), turf, sugar beets (Beta vulgaris L.), soybean (Glycine max L.), sweet corn and nursery, fruit and nut crops. In addition to agricultural repellent applications, AQ has also been used to treat toxicants for the protection of non-target birds. Few studies have demonstrated AQ repellency in mammals, including wild boar (Sus scrofa, L.), thirteen-lined ground squirrels (Ictidomys tridecemlineatus, Mitchill), black-tailed prairie dogs (Cyomys ludovicainus, Ord.), common voles (Microtus arvalis, Pallas), house mice (Mus musculus, L.), Tristram's jirds (Meriones tristrami, Thomas) and black rats (Rattus rattus L.). Natural sources of AQ and its derivatives have also been identified as insecticides and insect repellents. As a natural or synthetic biopesticide, AQ

  7. Review of anthraquinone applications for pest management and agricultural crop protection.

    PubMed

    DeLiberto, Shelagh T; Werner, Scott J

    2016-10-01

    We have reviewed published anthraquinone applications for international pest management and agricultural crop protection from 1943 to 2016. Anthraquinone (AQ) is commonly found in dyes, pigments and many plants and organisms. Avian repellent research with AQ began in the 1940s. In the context of pest management, AQ is currently used as a chemical repellent, perch deterrent, insecticide and feeding deterrent in many wild birds, and in some mammals, insects and fishes. Criteria for evaluation of effective chemical repellents include efficacy, potential for wildlife hazards, phytotoxicity and environmental persistence. As a biopesticide, AQ often meets these criteria of efficacy for the non-lethal management of agricultural depredation caused by wildlife. We summarize published applications of AQ for the protection of newly planted and maturing crops from pest birds. Conventional applications of AQ-based repellents include preplant seed treatments [e.g. corn (Zea mays L.), rice (Oryza sativa L.), sunflower (Helianthus annuus L.), wheat (Triticum spp.), millet (Panicum spp.), sorghum (Sorghum bicolor L.), pelletized feed and forest tree species] and foliar applications for rice, sunflower, lettuce (Lactuca sativa L.), turf, sugar beets (Beta vulgaris L.), soybean (Glycine max L.), sweet corn and nursery, fruit and nut crops. In addition to agricultural repellent applications, AQ has also been used to treat toxicants for the protection of non-target birds. Few studies have demonstrated AQ repellency in mammals, including wild boar (Sus scrofa, L.), thirteen-lined ground squirrels (Ictidomys tridecemlineatus, Mitchill), black-tailed prairie dogs (Cyomys ludovicainus, Ord.), common voles (Microtus arvalis, Pallas), house mice (Mus musculus, L.), Tristram's jirds (Meriones tristrami, Thomas) and black rats (Rattus rattus L.). Natural sources of AQ and its derivatives have also been identified as insecticides and insect repellents. As a natural or synthetic biopesticide, AQ

  8. Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

    PubMed Central

    Iyer, Niranjani J.; Bryant, Douglas W.; Mockler, Todd C.; Mahalingam, Ramamurthy

    2012-01-01

    Background Switchgrass (Panicum virgatum L.) is a C4 perennial grass and widely popular as an important bioenergy crop. To accelerate the pace of developing high yielding switchgrass cultivars adapted to diverse environmental niches, the generation of genomic resources for this plant is necessary. The large genome size and polyploid nature of switchgrass makes whole genome sequencing a daunting task even with current technologies. Exploring the transcriptional landscape using next generation sequencing technologies provides a viable alternative to whole genome sequencing in switchgrass. Principal Findings Switchgrass cDNA libraries from germinating seedlings, emerging tillers, flowers, and dormant seeds were sequenced using Roche 454 GS-FLX Titanium technology, generating 980,000 reads with an average read length of 367 bp. De novo assembly generated 243,600 contigs with an average length of 535 bp. Using the foxtail millet genome as a reference greatly improved the assembly and annotation of switchgrass ESTs. Comparative analysis of the 454-derived switchgrass EST reads with other sequenced monocots including Brachypodium, sorghum, rice and maize indicated a 70–80% overlap. RPKM analysis demonstrated unique transcriptional signatures of the four tissues analyzed in this study. More than 24,000 ESTs were identified in the dormant seed library. In silico analysis indicated that there are more than 2000 EST-SSRs in this collection. Expression of several orphan ESTs was confirmed by RT-PCR. Significance We estimate that about 90% of the switchgrass gene space has been covered in this analysis. This study nearly doubles the amount of EST information for switchgrass currently in the public domain. The celerity and economical nature of second-generation sequencing technologies provide an in-depth view of the gene space of complex genomes like switchgrass. Sequence analysis of closely related members of the NAD+-malic enzyme type C4 grasses such as the model system

  9. Sugarcane Aphid (Hemiptera: Aphididae): Host Range and Sorghum Resistance Including Cross-Resistance From Greenbug Sources.

    PubMed

    Armstrong, J Scott; Rooney, William L; Peterson, Gary C; Villenueva, Raul T; Brewer, Michael J; Sekula-Ortiz, Danielle

    2015-04-01

    The graminous host range and sources of sorghum [Sorghum bicolor (L.) Moench.] plant resistance, including cross-resistance from greenbug, Schizaphis graminum (Rondani), were studied for the newly emerging sugarcane aphid, Melanaphis sacchari (Zehntner), in greenhouse no-choice experiments and field evaluations. The sugarcane aphid could not survive on field corn, Zea mays (L.), Teff grass, Eragrostis tef (Zucc.), proso millet, Panicum miliaceum L., barley, Hordeum vulgare L., and rye, Secale cereale L. Only sorghum genotypes served as hosts including Johnsongrass, Sorghum halepense (L.), a highly suitable noncrop host that generates high numbers of sugarcane aphid and maintains moderate phenotypic injury. The greenbug-resistant parental line RTx2783 that is resistant to greenbug biotypes C and E was resistant to sugarcane aphid in both greenhouse and field tests, while PI 55607 greenbug resistant to biotypes B, C, and E was highly susceptible. PI 55610 that is greenbug resistant to biotypes B, C, and E maintained moderate resistance to the sugarcane aphid, while greenbug-resistant PI 264453 was highly susceptible to sugarcane aphid. Two lines and two hybrids from the Texas A&M breeding program B11070, B11070, AB11055-WF1-CS1/RTx436, and AB11055-WF1-CS1/RTx437 were highly resistant to sugarcane aphid, as were parental types SC110, SC170, and South African lines Ent62/SADC, (Macia/TAM428)-LL9, (SV1*Sima/IS23250)-LG15. Tam428, a parental line that previously showed moderate resistance in South Africa and India, also showed moderate resistance in these evaluations. Overall, 9 of 20 parental sorghum entries tested for phenotypic damage in the field resulted in good resistance to the sugarcane aphid and should be utilized in breeding programs that develop agronomically acceptable sorghums for the southern regions of the United States.

  10. Quantitative Profiling of Feruloylated Arabinoxylan Side-Chains from Graminaceous Cell Walls.

    PubMed

    Schendel, Rachel R; Meyer, Marleen R; Bunzel, Mirko

    2015-01-01

    Graminaceous arabinoxylans are distinguished by decoration with feruloylated monosaccharidic and oligosaccharidic side-chains. Although it is hypothesized that structural complexity and abundance of these feruloylated arabinoxylan side-chains may contribute, among other factors, to resistance of plant cell walls to enzymatic degradation, quantitative profiling approaches for these structural units in plant cell wall materials have not been described yet. Here we report the development and application of a rapid and robust method enabling the quantitative comparison of feruloylated side-chain profiles in cell wall materials following mildly acidic hydrolysis, C18-solid phase extraction (SPE), reduction under aprotic conditions, and liquid chromatography with diode-array detection/mass spectrometry (LC-DAD/MS) separation and detection. The method was applied to the insoluble fiber/cell wall materials isolated from 12 whole grains: wild rice (Zizania aquatica L.), long-grain brown rice (Oryza sativa L.), rye (Secale cereale L.), kamut (Triticum turanicum Jakubz.), wheat (Triticum aestivum L.), spelt (Triticum spelta L.), intermediate wheatgrass (Thinopyrum intermedium), maize (Zea mays L.), popcorn (Zea mays L. var. everta), oat (Avena sativa L.) (dehulled), barley (Hordeum vulgare L.) (dehulled), and proso millet (Panicum miliaceum L.). Between 51 and 96% of the total esterified monomeric ferulates were represented in the quantified compounds captured in the feruloylated side-chain profiles, which confirms the significance of these structures to the global arabinoxylan structure in terms of quantity. The method provided new structural insights into cereal grain arabinoxylans, in particular, that the structural moiety α-l-galactopyranosyl-(1→2)-β-d-xylopyranosyl-(1→2)-5-O-trans-feruloyl-l-arabinofuranose (FAXG), which had previously only been described in maize, is ubiquitous to cereal grains. PMID:26834763

  11. Sugarcane Aphid (Hemiptera: Aphididae): Host Range and Sorghum Resistance Including Cross-Resistance From Greenbug Sources.

    PubMed

    Armstrong, J Scott; Rooney, William L; Peterson, Gary C; Villenueva, Raul T; Brewer, Michael J; Sekula-Ortiz, Danielle

    2015-04-01

    The graminous host range and sources of sorghum [Sorghum bicolor (L.) Moench.] plant resistance, including cross-resistance from greenbug, Schizaphis graminum (Rondani), were studied for the newly emerging sugarcane aphid, Melanaphis sacchari (Zehntner), in greenhouse no-choice experiments and field evaluations. The sugarcane aphid could not survive on field corn, Zea mays (L.), Teff grass, Eragrostis tef (Zucc.), proso millet, Panicum miliaceum L., barley, Hordeum vulgare L., and rye, Secale cereale L. Only sorghum genotypes served as hosts including Johnsongrass, Sorghum halepense (L.), a highly suitable noncrop host that generates high numbers of sugarcane aphid and maintains moderate phenotypic injury. The greenbug-resistant parental line RTx2783 that is resistant to greenbug biotypes C and E was resistant to sugarcane aphid in both greenhouse and field tests, while PI 55607 greenbug resistant to biotypes B, C, and E was highly susceptible. PI 55610 that is greenbug resistant to biotypes B, C, and E maintained moderate resistance to the sugarcane aphid, while greenbug-resistant PI 264453 was highly susceptible to sugarcane aphid. Two lines and two hybrids from the Texas A&M breeding program B11070, B11070, AB11055-WF1-CS1/RTx436, and AB11055-WF1-CS1/RTx437 were highly resistant to sugarcane aphid, as were parental types SC110, SC170, and South African lines Ent62/SADC, (Macia/TAM428)-LL9, (SV1*Sima/IS23250)-LG15. Tam428, a parental line that previously showed moderate resistance in South Africa and India, also showed moderate resistance in these evaluations. Overall, 9 of 20 parental sorghum entries tested for phenotypic damage in the field resulted in good resistance to the sugarcane aphid and should be utilized in breeding programs that develop agronomically acceptable sorghums for the southern regions of the United States. PMID:26470168

  12. Enhanced phytoextraction of germanium and rare earth elements - a rhizosphere-based approach

    NASA Astrophysics Data System (ADS)

    Wiche, Oliver

    2016-04-01

    with white lupin and cereals like barley (Hordeum vulgare) and millet (Panicum miliaceum) significantly enhanced the uptake of all investigated elements in co-cultured species due to interspecific root interactions. Concentrations of the investigated rare earth elements in shoots were significantly correlated to concentrations of Fe, Mn and P in shoots. Enhanced uptake of the mentioned elements corresponded to a depletion of elements in the rhizosphere soil of white lupin. Accordingly, processes in the rhizosphere of plants seem to play a key role controlling availability of REEs in the soil-plant system, since presence of white lupin clearly increased the uptake of REEs in shoots of barley and millet even to a level comparable with white lupin and this was most probably caused by attacking fractions of elements in soil hardly accessible for barley and millet. These studies have been carried out in the framework of the PhytoGerm project financed by the Federal Ministry of Education and Research, Germany.

  13. 7 CFR 319.41-6 - Importations by mail.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... express provided for in § 319.41-5, importations are permitted by mail of (a) mature corn on the cob from the countries specified in § 319.41-1(b)(2), (b) clean shelled corn and clean seed of the other...

  14. 7 CFR 319.41-1 - Plant products permitted entry. 1

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and... countries. (§ 319.15.) (b) Except as provided for in paragraph (c) for corn seed from New Zealand, seed and all other portions in the raw or unmanufactured state of Indian corn or maize (Zea mays L.), and...

  15. 7 CFR 319.41-5 - Condition of entry.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... § 319.41-1 is conditioned on their freedom from the European corn borer and other injurious insects and... of the European corn borer and of other injurious insects and plant diseases. (3) Shelled corn...

  16. 7 CFR 319.41-5 - Condition of entry.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... § 319.41-1 is conditioned on their freedom from the European corn borer and other injurious insects and... of the European corn borer and of other injurious insects and plant diseases. (3) Shelled corn...

  17. 7 CFR 319.41-6 - Importations by mail.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... express provided for in § 319.41-5, importations are permitted by mail of (a) mature corn on the cob from the countries specified in § 319.41-1(b)(2), (b) clean shelled corn and clean seed of the other...

  18. 7 CFR 319.41-6 - Importations by mail.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... express provided for in § 319.41-5, importations are permitted by mail of (a) mature corn on the cob from the countries specified in § 319.41-1(b)(2), (b) clean shelled corn and clean seed of the other...

  19. 7 CFR 319.41-2 - Application for permits.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Application for permits. 319.41-2 Section 319.41-2 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and...

  20. 7 CFR 319.41-1 - Plant products permitted entry. 1

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and... countries. (§ 319.15.) (b) Except as provided for in paragraph (c) for corn seed from New Zealand, seed and all other portions in the raw or unmanufactured state of Indian corn or maize (Zea mays L.), and...

  1. 7 CFR 319.41-4 - Notice of arrival by permittee.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Notice of arrival by permittee. 319.41-4 Section 319.41-4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn,...

  2. 7 CFR 319.41-2 - Application for permits.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Application for permits. 319.41-2 Section 319.41-2 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and...

  3. 7 CFR 319.41-2 - Application for permits.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Application for permits. 319.41-2 Section 319.41-2 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and...

  4. 7 CFR 319.41-5 - Condition of entry.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... § 319.41-1 is conditioned on their freedom from the European corn borer and other injurious insects and... of the European corn borer and of other injurious insects and plant diseases. (3) Shelled corn...

  5. 7 CFR 319.41-1 - Plant products permitted entry. 1

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and... countries. (§ 319.15.) (b) Except as provided for in paragraph (c) for corn seed from New Zealand, seed and all other portions in the raw or unmanufactured state of Indian corn or maize (Zea mays L.), and...

  6. 7 CFR 319.41-2 - Application for permits.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Application for permits. 319.41-2 Section 319.41-2 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and...

  7. 7 CFR 319.41-4 - Notice of arrival by permittee.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Notice of arrival by permittee. 319.41-4 Section 319.41-4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn,...

  8. 7 CFR 319.41-5 - Condition of entry.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... § 319.41-1 is conditioned on their freedom from the European corn borer and other injurious insects and... of the European corn borer and of other injurious insects and plant diseases. (3) Shelled corn...

  9. 7 CFR 319.41-4 - Notice of arrival by permittee.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Notice of arrival by permittee. 319.41-4 Section 319.41-4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn,...

  10. 7 CFR 319.41-4 - Notice of arrival by permittee.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Notice of arrival by permittee. 319.41-4 Section 319.41-4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn,...

  11. 7 CFR 319.41-1 - Plant products permitted entry. 1

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and... countries. (§ 319.15.) (b) Except as provided for in paragraph (c) for corn seed from New Zealand, seed and all other portions in the raw or unmanufactured state of Indian corn or maize (Zea mays L.), and...

  12. 7 CFR 319.41-6 - Importations by mail.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... express provided for in § 319.41-5, importations are permitted by mail of (a) mature corn on the cob from the countries specified in § 319.41-1(b)(2), (b) clean shelled corn and clean seed of the other...

  13. 7 CFR 319.41-4 - Notice of arrival by permittee.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Notice of arrival by permittee. 319.41-4 Section 319.41-4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn,...

  14. 7 CFR 319.41-5 - Condition of entry.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... § 319.41-1 is conditioned on their freedom from the European corn borer and other injurious insects and... the means of carriage of the European corn borer and of other injurious insects and plant diseases....

  15. 7 CFR 319.41-2 - Application for permits.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Application for permits. 319.41-2 Section 319.41-2 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and...

  16. 7 CFR 319.41-6 - Importations by mail.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... SERVICE, DEPARTMENT OF AGRICULTURE FOREIGN QUARANTINE NOTICES Indian Corn or Maize, Broomcorn, and Related... express provided for in § 319.41-5, importations are permitted by mail of (a) mature corn on the cob from the countries specified in § 319.41-1(b)(2), (b) clean shelled corn and clean seed of the other...

  17. Assortment of the plants in the Medieval diet in Czech countries (based on archaeobotanical finds).

    PubMed

    Culíková, V

    2000-01-01

    The finds of remains of useful plants in archaeological objects were drawing attention already in the last century. However, it was not until after the World War II, in relation with renovation of historical cores of the towns, when a separate branch of the botany--archaeobotany constituted. In the Czech Republic it was E. Opravil who was the first to become engaged in a systematic archaeobotanical research at the beginning of the 60's. All the vegetal remains--fruits and seeds on the first place as well as pollen grains from prehistoric times to the post-medieval period, are the subjects of archaeobotany. The medieval waste pits are the richest sources of the vegetal remains. They contain a lot of diasporas of cultural as well as wild plants. The remains of useful plants are an authentic document of the vegetal component of diet. Even though some vegetal species, such as for example garlic, onion or stalk-plants, about whose cultivation we are informed from literature, occur only seldom, there appeared also the species not mentioned in literature. All the basic cereals have been known in our country already since the early Middle Ages. Wheat (Triticum aestivum) and rye (Secale cereale), as well as millet (Panicum miliaceum) that, along with buckwheat (Fagopyrum esculentum), were replaced by potatoes in the modern times were the most important. Also leguminous plants were of great importance in the diet even though their charred seeds seldom preserved. Remains of oil plants such as hemp (Cannabis sativa), flax (Linum usitatissimum) and poppy (Papaver somniferum) preserved well. It was successfully proved that cucumber (Cucumis sativus), among other numerous kinds of vegetables, was introduced by the Slavs already in the 8th century in Moravia and in the 9th century in Bohemia. The assortment of fruit was rich--especially the assortment of cultivated fruit. Among the imported kinds of fruit the first place occupied figs (Ficus carica), from the numerous finds it can

  18. Assortment of the plants in the Medieval diet in Czech countries (based on archaeobotanical finds).

    PubMed

    Culíková, V

    2000-01-01

    The finds of remains of useful plants in archaeological objects were drawing attention already in the last century. However, it was not until after the World War II, in relation with renovation of historical cores of the towns, when a separate branch of the botany--archaeobotany constituted. In the Czech Republic it was E. Opravil who was the first to become engaged in a systematic archaeobotanical research at the beginning of the 60's. All the vegetal remains--fruits and seeds on the first place as well as pollen grains from prehistoric times to the post-medieval period, are the subjects of archaeobotany. The medieval waste pits are the richest sources of the vegetal remains. They contain a lot of diasporas of cultural as well as wild plants. The remains of useful plants are an authentic document of the vegetal component of diet. Even though some vegetal species, such as for example garlic, onion or stalk-plants, about whose cultivation we are informed from literature, occur only seldom, there appeared also the species not mentioned in literature. All the basic cereals have been known in our country already since the early Middle Ages. Wheat (Triticum aestivum) and rye (Secale cereale), as well as millet (Panicum miliaceum) that, along with buckwheat (Fagopyrum esculentum), were replaced by potatoes in the modern times were the most important. Also leguminous plants were of great importance in the diet even though their charred seeds seldom preserved. Remains of oil plants such as hemp (Cannabis sativa), flax (Linum usitatissimum) and poppy (Papaver somniferum) preserved well. It was successfully proved that cucumber (Cucumis sativus), among other numerous kinds of vegetables, was introduced by the Slavs already in the 8th century in Moravia and in the 9th century in Bohemia. The assortment of fruit was rich--especially the assortment of cultivated fruit. Among the imported kinds of fruit the first place occupied figs (Ficus carica), from the numerous finds it can

  19. Herbaceous vegetation productivity, persistence, and metals uptake on a biosolids-amended mine soil.

    PubMed

    Evanylo, G K; Abaye, A O; Dundas, C; Zipper, C E; Lemus, R; Sukkariyah, B; Rockett, J

    2005-01-01

    The selection of plant species is critical for the successful establishment and long-term maintenance of vegetation on reclaimed surface mined soils. A study was conducted to assess the capability of 16 forage grass and legume species in monocultures and mixes to establish and thrive on a reclaimed Appalachian surface mine amended with biosolids. The 0.15-ha coarse-textured, rocky, non-acid forming mined site was prepared for planting by grading to a 2% slope and amending sandstone overburden materials with a mixture of composted and dewatered, anaerobically digested biosolids at a rate of 368 Mg ha(-1) (dry weight). Tall fescue (Festuca arundinacea Schreb.), orchardgrass (Dactylis glomerata L.), switchgrass (Panicum virgatum L.), caucasian bluestem (Bothriochloa caucasia L.), reed canarygrass (Phalaris arundinacea L.), ladino clover (Trifolium repens L.), birdsfoot trefoil (Lotus corniculatus L.), crownvetch (Coronilla varia L.), alfalfa (Medicago sativa L.), common sericea lespedeza and AULotan sericea lespedeza (Lespedeza cuneata L.), tall fescue-ladino clover, tall fescue-alfalfa, orchardgrass-birdsfoot trefoil, switchgrass-AULotan, and an herbaceous species mix intended for planting on reforested sites consisting of foxtail millet [Setaria italica (L.) Beauv.], perennial ryegrass (Lolium perenne L.), redtop (Agrostis alba L.), kobe lespedeza (Kummerowia striata L.), appalow lespedeza (Lespedeza cuneata L.), and birdsfoot trefoil were established between spring 1990 and 1991. Vegetative biomass and/or persistence were assessed in 1996, 1997, 1998, 2000, 2001, and 2002. The high rate of biosolids applied provided favorable soil chemical properties but could not overcome physical property limitations due to shallow undeveloped soil perched atop a compacted soil layer at 25 cm depth. The plant species whose persistence and biomass production were the greatest after a decade or more of establishment (i.e., switchgrass, sericea lespedeza, reed canarygrass, tall

  20. Bioavailable concentrations of germanium and rare earth elements in soil as affected by low molecular weight organic acids and root exudates

    NASA Astrophysics Data System (ADS)

    Wiche, Oliver; Székely, Balázs; Kummer, Nicolai-Alexeji; Heinemann, Ute; Tesch, Silke; Heilmeier, Hermann

    2014-05-01

    Availability of elements in soil to plant is generally dependent on the solubility and mobility of elements in soil solution which is controlled by soil, elemental properties and plant-soil interactions. Low molecular organic acids or other root exudates may increase mobility and availability of certain elements for plants as an effect of lowering pH in the rhizosphere and complexation. However, these processes take place in a larger volume in soil, therefore to understand their nature, it is also important to know in which layers of the soil what factors modify these processes. In this work the influence of citric acid and root exudates of white lupin (Lupinus albus L.) on bioavailable concentrations of germanium, lanthan, neodymium, gadolinium and erbium in soil solution and uptake in root and shoot of rape (Brassica napus L.), comfrey (Symphytum officinale L.), common millet (Panicum milliaceum L.) and oat (Avena sativa L.) was investigated. Two different pot experiments were conducted: (1) the mentioned plant species were treated with nutrient solutions containing various amount of citric acid; (2) white lupin was cultivated in mixed culture (0 % lupin, 33 % lupin) with oat (Avena sativa L.) and soil solution was obtained by plastic suction cups placed at various depths. As a result, addition of citric acid significantly increased germanium concentrations in plant tissue of comfrey and rape and increased translocation of germanium, lanthan, neodymium, gadolinium and erbium from root to shoot. The cultivation of white lupin in mixed culture with oat led to significantly higher concentrations of germanium and increasing concentrations of lanthan, neodymium, gadolinium and erbium in soil solution and aboveground plant tissue. In these pots concentrations of citric acid in soil solution were significantly higher than in the control. The results show, that low molecular organic acids exuded by plant roots are of great importance for the mobilization of germanium

  1. 40 CFR 180.227 - Dicamba; tolerances for residues.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... removed 0.04 Corn, sweet, stover 0.50 Cotton, undelinted seed 0.2 Grass, forage, fodder and hay, group 17, forage 125.0 Grass, forage, fodder and hay, group 17, hay 200.0 Millet, proso, forage 90.0 Millet,...

  2. De novo transcriptome assembly of Setatria italica variety Taejin.

    PubMed

    Jo, Yeonhwa; Lian, Sen; Cho, Jin Kyong; Choi, Hoseong; Kim, Sang-Min; Kim, Sun-Lim; Lee, Bong Choon; Cho, Won Kyong

    2016-06-01

    Foxtail millet (Setaria italica) belonging to the family Poaceae is an important millet that is widely cultivated in East Asia. Of the cultivated millets, the foxtail millet has the longest history and is one of the main food crops in South India and China. Moreover, foxtail millet is a model plant system for biofuel generation utilizing the C4 photosynthetic pathway. In this study, we carried out de novo transcriptome assembly for the foxtail millet variety Taejin collected from Korea using next-generation sequencing. We obtained a total of 8.676 GB raw data by paired-end sequencing. The raw data in this study can be available in NCBI SRA database with accession number of SRR3406552. The Trinity program was used to de novo assemble 145,332 transcripts. Using the TransDecoder program, we predicted 82,925 putative proteins. BLASTP was performed against the Swiss-Prot protein sequence database to annotate the functions of identified proteins, resulting in 20,555 potentially novel proteins. Taken together, this study provides transcriptome data for the foxtail millet variety Taejin by RNA-Seq. PMID:27257606

  3. Quality characteristics of gluten free cookies prepared from different flour combinations.

    PubMed

    Rai, Sweta; Kaur, Amarjeet; Singh, Baljit

    2014-04-01

    The present investigation was undertaken on the utilization of alternate flours/meals (rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum vulgare) and pearl millet (Pennisetum glaucum) for the preparation of gluten free cookies as compared to conventional wheat (Triticum aestivum) flour cookies. The physicochemical parameters, sensory qualities and functional properties of flours/cookies were studied and compared with control cookies. The blend of maize and pearl millet had best pasting qualities followed by blend of pearl millet and sorghum flour. The control cookies showed a higher yield (186.8%) but stronger peak force (2.69 kg). The cookies prepared from rice and maize combination had highest spread ratio whereas, the lowest spread ratio was observed in rice and sorghum combination. The cookies with pearl millet and sorghum flour combination had higher fat, protein, ash and calorific values as compared to control cookies. The maximum sensory overall acceptability scores were found for cookies prepared from combination of pearl millet and sorghum flour followed by rice and sorghum, maize and sorghum, rice and maize, maize and pearl millet, rice and pearl millet and control cookies. All gluten free cookies had higher nutritional value as compared to control cookies and were acceptable by panelists.

  4. Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Geographic patterns of genetic variation are shaped by multiple evolutionary processes, including genetic drift, migration, and natural selection. Switchgrass (Panicum virgatum L.) has strong ecotypic differentiation despite life history characteristics that promote high levels of gene flow and can ...

  5. Generation of Neo Octaploid Switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) exists as multiple cytotypes with octaploid and tetraploid populations occupying distinct, overlapping ranges. These cytotypes tend to show differences in adaptation, yield potential, and other characters, but the specific result of whole genome duplication is not ...

  6. Root biomass and soil carbon response to growing perennial grasses for bioenergy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dedicated bioenergy crops such as switchgrass (Panicum virgatum L.), miscanthus [Miscanthus x giganteus (Mxg)], indiangrass [Sorghastrum nutans (L.) Nash], and big bluestem (Andropogon gerardii Vitman) can provide cellulosic feedstock for biofuel production while maintaining or improving soil and en...

  7. Sustainability of Switchgrass for Cellulosic Ethanol: Evaluating Net Energy, Greenhouse Gas Emissions, and Feedstocks Costs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Perennial herbaceous plants such as switchgrass are being evaluated as cellulosic bioenergy crops. Sustainability concerns with switchgrass (Panicum virgatum L.) and similar energy crops have been about net energy efficiency, potential greenhouse gas (GHG) emissions, and economic feasibility grown ...

  8. Nutrient uptake of ornamental plants exposed to arsenic in hydroponic solution

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Arsenic-based agro-chemicals have contaminated considerable acreage on turf-farms, orchards, and around horticultural production structures. A study was undertaken to evaluate iris (Iris virginica), switchgrass (Panicum virgatum), Tithonia rotundiflora, Coreopsis lanceolata, Sunflower (Helianthus an...

  9. Big bluestem and switchgrass feedstock harvest timing: Nitrous oxide response to feedstock harvest timing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerdardii Vitman) are potential bioenergy feedstocks. Feedstock storage limitations, labor constraints for harvest, and environmental benefits provided by perennials are rationales for developing localized perennial feedstock as an alter...

  10. Do yield and quality of big bluestem and switchgrass feedstock decline over winter?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerdardii Vitman) are potential bioenergy feedstocks for thermochemical platforms. Feedstock storage, fall harvest constraints, and environmental benefits provided by perennials are rationales for developing localized perennial feedstock...

  11. Enclosure of mitochondria by chloroplasts.

    PubMed

    Brown, R H; Rigsby, L L; Akin, D E

    1983-02-01

    In Panicum species of the Laxa group, some of which have characteristics intermediate to C(3) and C(4) photosynthesis species, some mitochondria in leaf bundle sheath cells are surrounded by chloroplasts when viewed in profile. Serial sectioning of leaves of one Laxa species, Panicum schenckii Hack, shows that these mitochondria are enclosed by chloroplasts. Complete enclosure rather than invagination also is indicated by absence of two concentric chloroplast membranes surrounding the mitochondrial profiles.

  12. 40 CFR 180.145 - Fluorine compounds; tolerances for residues.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., postharvest 70 Milk, powdered 5.0 Millet, grain, postharvest 40.0 Nut, pine, postharvest 20 Nut, tree, Group... (sodium aluminum fluoride), in or on the following raw agricultural commodities: Commodity Parts...

  13. 40 CFR 180.145 - Fluorine compounds; tolerances for residues.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ..., postharvest 70 Milk, powdered 5.0 Millet, grain, postharvest 40.0 Nut, pine, postharvest 20 Nut, tree, Group... (sodium aluminum fluoride), in or on the following raw agricultural commodities: Commodity Parts...

  14. Quick Start Gluten Free Diet Guide for Celiac Disease and Non Celiac Sensitivity

    MedlinePlus

    ... food products. Choose Naturally Gluten-Free Grains and Flours , including rice, cassava, corn (maize), soy, potato, tapioca, beans, sorghum, quinoa, millet, buckwheat, arrowroot, amaranth, teff, flax, chia, yucca, and nut flours. Research indicates that pure, uncontaminated oats consumed in ...

  15. Development of innovative techniques and principles that may be used as models to improve plant performance: Technical progress report, February 1, 1987 to January 31, 1988

    SciTech Connect

    Hanna, W.W.; Burton, G.W.

    1987-09-01

    Plant breeders can develop such plants as they have in the past but they will have less time in which to do it. A method for storing pearl millet pollen has been developed which makes germplasm available for crossing on an as needed basis; viability has been maintained in storage for over three years. New cytoplasms have been transferred from wild species to cultivated pearl millet. One cytoplasm conditions excellent cytoplasmic male sterility and produces no fertile revertants. Other cytoplasms appear to affect seed weight and dry matter yields. Techniques for transferring and using genes from the wild grassy relatives in the cultivated species have resulted in the transfer and release of two pearl millet inbreds and one F/sub 1/ hybrid with dominant genes for immunity to both rust and Piricularia leaf spot. Significant progress is being made in developing an obligate apomictic pearl millet.

  16. Photosynthesis of Grass Species Differing in Carbon Dioxide Fixation Pathways 1

    PubMed Central

    Bouton, Joseph H.; Brown, R. Harold; Bolton, Jacqueline K.; Campagnoli, Raymond P.

    1981-01-01

    Panicum species of the Laxa group were investigated in a series of published reports and were found to possess C4, C3, and intermediate photosynthetic characteristics. Taxonomic and other relationships among these plants, however, are not clear. It was the objective of this investigation to document chromosome number, metaphase I chromosome behavior, and mode of reproduction, including abnormalities in the embryo sac, for these species. Chromosome counts showed a basic number (x) of 10 and ploidy levels of diploid (2n = 2x = 20), tetraploid (2n = 4x = 40), and hexaploid (2n = 6x = 60) in this group of Panicum. One diploid and one tetraploid accession of the C4 species, Panicum prionitis Griseb., were obtained. Of the intermediate species, Panicum milioides Nees ex Trin. was diploid, Panicum schenckii Hack. was hexaploid, and Panicum decipiens Nees, ex Trin. was found to possess two ploidy levels, one accession being diploid and the other accession being hexaploid. All the C3 species, which included two accessions of Panicum laxum Sw., three accessions of Panicum hylaeicum Mez., and one accession of Panicum rivulare Trin., were tetraploid. Meiosis was regular with primarily bivalent pairing at metaphase I in all species except the tetraploid accession of P. prionitis which possessed from 4 to 10 tetravalents. Stainable pollen was high in all species, ranging from 70 to 99%. Embryo sac analyses showed a single sac in all plants except the tetraploid accession of P. prionitis, which was found to possess an additional sac at anthesis. An additional sac was also observed in some ovaries of the P. schenckii accession. Self-pollinated seed set was high in all accessions except the diploid accession of P. prionitis and one accession of P. laxum where no seed was set under bagged conditions. This information establishes, within the limits of this collection, a base for future studies on genetic, taxonomic, photosynthetic, and evolutionary relationships among these plants

  17. Development of innovative techniques and principles that may be used as models to improve plant performance. Progress report

    SciTech Connect

    Hanna, W.W.; Burton, G.W.

    1984-06-01

    Dominant immunity to rust (Puccinia) and Piricularia leaf spot, a new stable A/sub 1/ cytoplasm and yield genes have been discovered in a single accession of P. monodii, a subspecies of pearl millet Pennisetum americanum. The useful genes were transferred to the best pearl millet inbreds using a backcrossing and screening system enhanced by controlling daylength, temperature, and breaking seed dormancy. Genes for fertility restoration, plant morphology, head characteristics and grain yield were transferred from the A' genome of P. purpureum (secondary gene pool) to pearl millet. This was made possible by doubling the chromosome number of the sterile triploid between pearl millet and P. purpureum to produce fertile hexaploids. A number of hexaploids were backcrossed to pearl millet to find hexaploids that produced A' gametes to produce AA' 2n = 14 pearl millet plants. The value of the genes on the A' genome were not recognized before the AA' plants were produced because the B genome masked the characteristics on the A' genome in P. purpureum. In the tertiary gene pool, male and female fertile apomictic BC/sub 1/ plants were produced between pearl millet and P. orientale or P. squamulatum by manipulating chromosome levels or by producing trispecific hybrids. The development of fertile backcross plants in this gene pool is encouraging for further germplasm transfer research with emphasis on apomixis. The cytoplasm of P. schweinfurthii has been transferred to pearl millet. Mutations for early maturity and daylength insensitivity induced with mutagens have resulted in the development and release of early maturing inbreds Tift 23A/sub 1/E/sub 1/ and Tift 23B/sub 1/E/sub 1/.

  18. Population dynamics of caterpillars on three cover crops before sowing cotton in Mato Grosso (Brazil).

    PubMed

    Silvie, P J; Menzel, C A; Mello, A; Coelho, A G

    2010-01-01

    Direct seeding mulch-based cropping systems under a preliminary cover crop such as millet are common in some areas of Brazil. Lepidopteran pests that damage cotton, soybean and maize crops can proliferate on cover crops, so preventive chemical treatments are necessary. Very little data is available on these pests on cover crops. This paper presents the dynamics of Spodoptera frugiperda, S. eridania, Mocis latipes and Diatraea saccharalis caterpillars monitored at Primavera do Leste, Mato Grosso state (Brazil) during the of 2005/2006 and 2006/2007 cropping seasons on four cover crops, i.e. finger millet (Eleusine coracana), pearl millet (Pennisetum glaucum), sorghum (Sorghum bicolor) and ruzigrass (Brachiaria ruziziensis). The pests were visually counted on plants within a 1 m2 transect (wooden frame). Caterpillars were reared to facilitate identification of collected species and parasitoids. Many S. frugiperda caterpillars were observed on millet in 2005, with a maximum of 37 caterpillars/m2. On sorghum, we found 30 caterpillars/m2, or 0.83 caterpillars/plant. The Diatraea borer attacked sorghum later than the other pests. M. latipes was also observed on millet. The millet cover crop had to be dried for at least 1 month before direct drilling the main cotton crop in order to impede S. frugiperda infestations on cotton plantlets, thus avoiding the need for substantial resowing. The comparative methodological aspects are discussed.

  19. Hydration behaviour of food grains and modelling their moisture pick up as per Peleg's equation: Part I. Cereals.

    PubMed

    Vasudeva, Singh; Vishwanathan, K H; Aswathanarayana, K N; Indhudhara Swamy, Y M

    2010-01-01

    Cereals and millets generally hydrate at a moderate rate and their hydration behaviour differs in native and in processed state. The study was on the hydration of paddy, milled rice, parboiled rice, wheat, millets and equilibrium moisture content (EMC) on soaking at room temperature. Paddy hydrated very slowly, hydration rate was slow in brown rice but fast in milled rice and highest in waxy rice. In most of the rice varieties, maximum absorption occurred at the end of 30 min. In wheat hydration rate was slow and its EMC was highest (43%). Maize grits of big size hydrated slowly compared to small grits. In coarse cereals EMC varied from 28 to 38%. Foxtail millet hydration was slow whereas that of finger millet was fast. The data were tested on the Peleg's equation, which gave a reasonable fit to experimental data. Peleg's constants k1 and k2 were calculated for the above grains and their hydration behaviour has been predicted. The model fitted very well to milled rice hydration data where the coefficient of variance ranged from 0.9982 to 0.9995. With exception in some millet the hydration data fitted well with the Peleg's equation. Generalized equations have been formulated for prediction of moisture content of cereals and millets.

  20. Development of innovative techniques and principles that may be used as models to improve plant performance. Technical progress report, February 1, 1990--January 31, 1993

    SciTech Connect

    Hanna, W.W.; Burton, G.W.

    1992-06-01

    Methods and techniques for transferring germplasm from wild to cultivated species are being developed. The transferred germplasm is being shown to be valuable in plant breeding and in cultivar development. In the primary gene pool of the grassy Pennisetum glaucum subspecies monodii germplasm, some cytoplasms are being identified that appear to have significant effects on forage yields and morphological characteristics. One cytoplasm, A{sub 4}, is very stable for male sterility and fertility is not easily restored by other lines. It should be a valuable cytoplasm for producing commercial forage hybrids. Disease resistance and yield genes transferred from monodii to cultivated pearl millet lines are having a major impact on increasing production of animals grazing disease resistant Tifleaf 2 pearl millet. Genes controlling resistance to many of the world-wide diseases on pearl millet are being identified in the monodii germplasm. Valuable germplasm has been transferred from the secondary gene pool P. purpuroum) which is used as the pollinator of the first pearl millet grain hybrid in the US Production of 7-chromosome gametes in 42-chromosome interspecific hybrids appears to be genotype specific and makes possible transfer of germplasm from the secondary gene pool to cultivated diploid pearl millet. Significant progress has been made in transferring genes controlling apomixis from P. squamulatum (tertiary gene pool) to cultivated pearl millet. Highly apomictic BC{sub 4} plants have been recovered, one of which sets five times as much seed as the best BC{sub 3} plant.

  1. Population dynamics of caterpillars on three cover crops before sowing cotton in Mato Grosso (Brazil).

    PubMed

    Silvie, P J; Menzel, C A; Mello, A; Coelho, A G

    2010-01-01

    Direct seeding mulch-based cropping systems under a preliminary cover crop such as millet are common in some areas of Brazil. Lepidopteran pests that damage cotton, soybean and maize crops can proliferate on cover crops, so preventive chemical treatments are necessary. Very little data is available on these pests on cover crops. This paper presents the dynamics of Spodoptera frugiperda, S. eridania, Mocis latipes and Diatraea saccharalis caterpillars monitored at Primavera do Leste, Mato Grosso state (Brazil) during the of 2005/2006 and 2006/2007 cropping seasons on four cover crops, i.e. finger millet (Eleusine coracana), pearl millet (Pennisetum glaucum), sorghum (Sorghum bicolor) and ruzigrass (Brachiaria ruziziensis). The pests were visually counted on plants within a 1 m2 transect (wooden frame). Caterpillars were reared to facilitate identification of collected species and parasitoids. Many S. frugiperda caterpillars were observed on millet in 2005, with a maximum of 37 caterpillars/m2. On sorghum, we found 30 caterpillars/m2, or 0.83 caterpillars/plant. The Diatraea borer attacked sorghum later than the other pests. M. latipes was also observed on millet. The millet cover crop had to be dried for at least 1 month before direct drilling the main cotton crop in order to impede S. frugiperda infestations on cotton plantlets, thus avoiding the need for substantial resowing. The comparative methodological aspects are discussed. PMID:21539250

  2. Vegetation, substrate and hydrology in floating marshes in the Mississippi river delta plain wetlands, USA

    USGS Publications Warehouse

    Sasser, C.E.; Gosselink, J.G.; Swenson, E.M.; Swarzenski, C.M.; Leibowitz, N.C.

    1996-01-01

    In the 1940s extensive floating marshes (locally called 'flotant') were reported and mapped in coastal wetlands of the Mississippi River Delta Plain. These floating marshes included large areas of Panicum hemitomon-dominated freshwater marshes, and Spartina patens/Scirpus olneyi brackish marshes. Today these marshes appear to be quite different in extent and type. We describe five floating habitats and one non-floating, quaking habitat based on differences in buoyancy dynamics (timing and degree of floating), substrate characteristics, and dominant vegetation. All floating marshes have low bulk density, organic substrates. Nearly all are fresh marshes. Panicum hemitomon floating marshes presently occur within the general regions that were reported in the 1940's by O'Neil, but are reduced in extent. Some of the former Panicum hemitomon marshes have been replaced by seasonally or variably floating marshes dominated, or co-dominated by Sagittaria lancifolia or Eleocharis baldwinii. ?? 1996 Kluwer Academic Publishers.

  3. Foxtail Mosaic Virus-Induced Gene Silencing in Monocot Plants1[OPEN

    PubMed Central

    Liu, Na; Xie, Ke; Jia, Qi; Zhao, Jinping; Chen, Tianyuan; Li, Huangai; Wei, Xiang; Diao, Xianmin; Hong, Yiguo

    2016-01-01

    Virus-induced gene silencing (VIGS) is a powerful technique to study gene function in plants. However, very few VIGS vectors are available for monocot plants. Here we report that Foxtail mosaic virus (FoMV) can be engineered as an effective VIGS system to induce efficient silencing of endogenous genes in monocot plants including barley (Hordeum vulgare L.), wheat (Triticum aestivum) and foxtail millet (Setaria italica). This is evidenced by FoMV-based silencing of phytoene desaturase (PDS) and magnesium chelatase in barley, of PDS and Cloroplastos alterados1 in foxtail millet and wheat, and of an additional gene IspH in foxtail millet. Silencing of these genes resulted in photobleached or chlorosis phenotypes in barley, wheat, and foxtail millet. Furthermore, our FoMV-based gene silencing is the first VIGS system reported for foxtail millet, an important C4 model plant. It may provide an efficient toolbox for high-throughput functional genomics in economically important monocot crops. PMID:27225900

  4. Foxtail Mosaic Virus-Induced Gene Silencing in Monocot Plants.

    PubMed

    Liu, Na; Xie, Ke; Jia, Qi; Zhao, Jinping; Chen, Tianyuan; Li, Huangai; Wei, Xiang; Diao, Xianmin; Hong, Yiguo; Liu, Yule

    2016-07-01

    Virus-induced gene silencing (VIGS) is a powerful technique to study gene function in plants. However, very few VIGS vectors are available for monocot plants. Here we report that Foxtail mosaic virus (FoMV) can be engineered as an effective VIGS system to induce efficient silencing of endogenous genes in monocot plants including barley (Hordeum vulgare L.), wheat (Triticum aestivum) and foxtail millet (Setaria italica). This is evidenced by FoMV-based silencing of phytoene desaturase (PDS) and magnesium chelatase in barley, of PDS and Cloroplastos alterados1 in foxtail millet and wheat, and of an additional gene IspH in foxtail millet. Silencing of these genes resulted in photobleached or chlorosis phenotypes in barley, wheat, and foxtail millet. Furthermore, our FoMV-based gene silencing is the first VIGS system reported for foxtail millet, an important C4 model plant. It may provide an efficient toolbox for high-throughput functional genomics in economically important monocot crops. PMID:27225900

  5. Development of innovative principles and techniques that may be used as models to improve plant performance. Progress report, February 1, 1985-January 31, 1986

    SciTech Connect

    Hanna, W.W.; Burton, G.W.

    1985-08-01

    A weedy Pennisetum americanum subspecies (monodii) is a valuable source of genes for resistance to the major diseases of pearl millet, providing a stable cytoplasmic male sterile system, restorer genes, and yield. These genes can be employed efficiently in screening and breeding methods. The secondary gene pool, that of P. purpureum, has genes for male fertility restoration and grain yield. The interspecific hybrids between pearl millet and P. purpureum have immediate forage potential. New interspecific hybrids have been produced between pearl millet and P. schweinfurthii of the tertiary gene pool. Progress is recorded in developing pearl millet inbreds Tift 23E and 23D, each with 50 different cytoplasms, for a future detailed study on the effects of cytoplasm on agronomic characteristics. Male-fertile, apomictic backcrosses and bridging hybrids continue to be produced for transferring gene(s) controlling apomixis from P. squamulatum to pearl millet. The principles and techniques developed in this study have significant implications for transferring genes controlling apomixis and other characteristics from the tertiary gene pools to cultivated crops.

  6. Potential of Sahelian Native Shrub Materials to Suppress the Spiral Nematode Helicotylenchus dihystera

    PubMed Central

    Chapuis-Lardy, L.; Diakhaté, S.; Djigal, D.; Ba, A. O.; Dick, R. P.; Sembéne, P. M.; Masse, D.

    2015-01-01

    Pearl millet (Pennisetum glaucum) is a drought-tolerant cereal commonly grown for grain and fodder in arid areas throughout the world. Senegalese millet fields are infested with Helicotylenchus. The native evergreen woody shrub Piliostigma reticulatum is widely distributed in sub-Saharan Africa. Its coppiced residues are used by small farmers as mulch in crop fields. The shrub’s nematicidal effect on the spiral nematode Helicotylenchus dihystera was evaluated in a pearl millet pot experiment. The abundance of nematodes decreased by 64% after application of either leaf powder or a pulverized mixing of leaves and stems, suggesting the use of aboveground materials of P. reticulatum as a potential nematicide. The results show promise for use of a local resource by subsistence farmers in the Sahel. Further research is needed on application to fully develop this approach as a biopesticide. PMID:26527843

  7. Oldest directly dated remains of sheep in China.

    PubMed

    Dodson, John; Dodson, Eoin; Banati, Richard; Li, Xiaoqiang; Atahan, Pia; Hu, Songmei; Middleton, Ryan J; Zhou, Xinying; Nan, Sun

    2014-01-01

    The origins of domesticated sheep (Ovis sp.) in China remain unknown. Previous workers have speculated that sheep may have been present in China up to 7000 years ago, however many claims are based on associations with archaeological material rather than independent dates on sheep material. Here we present 7 radiocarbon dates on sheep bone from Inner Mongolia, Ningxia and Shaanxi provinces. DNA analysis on one of the bones confirms it is Ovis sp. The oldest ages are about 4700 to 4400 BCE and are thus the oldest objectively dated Ovis material in eastern Asia. The graphitisised bone collagen had δ(13)C values indicating some millet was represented in the diet. This probably indicates sheep were in a domestic setting where millet was grown. The younger samples had δ(13)C values indicating that even more millet was in the diet, and this was likely related to changes in foddering practices.

  8. Oldest Directly Dated Remains of Sheep in China

    NASA Astrophysics Data System (ADS)

    Dodson, John; Dodson, Eoin; Banati, Richard; Li, Xiaoqiang; Atahan, Pia; Hu, Songmei; Middleton, Ryan J.; Zhou, Xinying; Nan, Sun

    2014-11-01

    The origins of domesticated sheep (Ovis sp.) in China remain unknown. Previous workers have speculated that sheep may have been present in China up to 7000 years ago, however many claims are based on associations with archaeological material rather than independent dates on sheep material. Here we present 7 radiocarbon dates on sheep bone from Inner Mongolia, Ningxia and Shaanxi provinces. DNA analysis on one of the bones confirms it is Ovis sp. The oldest ages are about 4700 to 4400 BCE and are thus the oldest objectively dated Ovis material in eastern Asia. The graphitisised bone collagen had δ13C values indicating some millet was represented in the diet. This probably indicates sheep were in a domestic setting where millet was grown. The younger samples had δ13C values indicating that even more millet was in the diet, and this was likely related to changes in foddering practices

  9. Relative severity of aflatoxin contamination of cereal crops in West Africa.

    PubMed

    Bandyopadhyay, Ranajit; Kumar, Manjula; Leslie, John F

    2007-10-01

    Aflatoxins are a common contaminant of cereals that can cause cancer, liver disease, immune suppression, retarded growth and development, and death, depending on the level and duration of exposure. Maize is an introduced crop to Africa and there have been efforts over the last 20 years or so to replace traditional cereal crops, such as sorghum (Sorghum bicolor) and pearl millet (Pennisetum glaucum), with maize. We found that maize was significantly more heavily colonized by aflatoxin-producing Aspergillus spp. than either sorghum or millet, with overall aflatoxin levels being correspondingly higher. On average, Nigerians consume 138 kg cereals annually. If the primary cereal is sorghum instead of maize, then the risk of aflatoxin-related problems is reduced 4-fold; if it is pearl millet, then the risks are reduced 8-fold. Development programs and other ventures to increase maize production in marginal cropping areas of Africa should be reconsidered and, instead, efforts to improve/maintain traditional crops encouraged.

  10. Development of innovative techniques and principles that may be used as models to improve plant performance. Technical progress report, February 1, 1991--January 31, 1992

    SciTech Connect

    Hanna, W.W.; Burton, G.W.

    1991-09-01

    Methods and techniques for transferring germplasm from wild to cultivated species are being developed. The transferred germplasm is being shown to be valuable in plant breeding and in cultivar development. Forty cytoplasms from the wild grassy subspecies monodii (primary gene pool) of Pennisetum glaucum are being tested for cytoplasmic effects on morphological characteristics and forage yield. A`-genome chromosomes from P. purpureum (secondary gene pool) have been transferred to cultivated pearl millet. The A`-chromosome derived lines have been developed into excellent male pollinator lines to produce a new high quality, high yielding grain hybrid for the US. Significant progress is being made in transferring the genes controlling apomixis (to produce true-breeding hybrids) from the tertiary gene pool to cultivated pearl millet. Backcross-4 plants are more pearl millet-like and reproduce by apomixis. New genome combinations have been produced in the apomixis genes transfer program which demonstrate the impact of apomixis on speciation and evolution.

  11. Development of innovative techniques and principles that may be used as models to improve plant performance: Technical progress report, February 1, 1988--January 31, 1989

    SciTech Connect

    Hanna, W.W.

    1988-09-01

    We propose to help develop innovative techniques to improve plant performance. Cytoplasms from wild Pennisetum species have been identified that affect forage yields, days to anthesis, head length, seed weight, and cytoplasmic-genic male sterility (cms). A number of new cytoplasms for cms are being identified. The A' genome from the secondary gene pool in Pennisetum is proving to be a valuable source of genes that can be rapidly used to improve cultivated pearl millet. The discovery and use of this germplasm may have a significant impact on developing pearl millet as a new drought tolerant grain crop for the US. Significant progress is being made in transferring gene(s) controlling apomixis from wild P. squamulatum to cultivated pearl millet for the purpose of producing true-breeding hybrids. 27 refs.

  12. Development of innovative techniques and principles that may be used as models to improve plant performance. Technical progress report, February 1, 1986-January 31, 1987

    SciTech Connect

    Hanna, W.W.; Burton, G.W.

    1986-09-01

    We have shown how monodii (primary gene pool), a weedy Pennisetum americanum subspecies, is a valuable source of genes for resistance to the major diseases of pearl millet, a stable cytoplasmic male sterile system, restorer genes, and yield. The gene for rust resistance can significantly increase both dry matter yield and quality of forage. The secondary gene pool of P. purpureum has genes for male fertility restoration and grain yield, better fertility restoration than most genes previously reported. The interspecific hybrids between pearl millet x P. purpureum have immediate forage potential and produce high quality forage from September to December when there is a critical need for high quality forage. Male-fertile, apomictic backcrosses and bridging hybrids continue to be produced for transferring gene(s) controlling apomixis from P. squamulatum to pearl millet. The principles and techniques developed in this study have significant implications for transferring genes controlling apomixis and other characteristics from the tertiary gene pools to cultivated crops.

  13. [Environmental effects of mercury around a large scale MSW incineration plant].

    PubMed

    Tang, Qing-he; Ding, Zhen-hua; Jiang, Jia-hua; Yang, Wen-hua; Cheng, Jin-ping; Wang, Wen-hua

    2005-01-01

    Samples of soil, vegetables, crops and air collected from Yuqiao Incineration Paint, Pudong Shanghai, were analyzed with an AMA-254 liquid/solid mercury analyzer. It is shown that background levels(BLs,2001) of mercury in surface soil is a little higher, mercury content in soils one year after operation(2002) and two year(2003) were both higher than BLs. The levels of mercury in vegetables is higher than Standard levels (GB 2762-94), the content of mercury in Soya and broomcorn sampled in 2003 was 2.3 and 2.7 times than that in 2002. Atmospheric mercury levels were 10.1, 5.0 and 10.6 ng/m3 in up-site,site and down-site.

  14. Chemistry and microbial functional diversity differences in biofuel crop and grassland soils in multiple geographies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    As crop and non-crop lands are increasingly becoming converted to biofuel feedstock production, it is of interest to identify potential impacts of annual and perennial feedstocks on soil ecosystem services. Soil samples obtained from 6 regional sets of switchgrass (Panicum virgatum L.) and 3 regiona...

  15. Hybridization of downregulated-COMT transgenic switchgrass lines with field selected switchgrass for improved biomass traits

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Transgenic switchgrass (Panicum virgatum L.) has been produced for improved cell walls for biofuels. Downregulated caffeic acid 3-O-methyltransferase (COMT) switchgrass produced significantly more biomass and biofuel than the non-transgenic progenitor line. In the present study we sought to further...

  16. Transgene autoexcision in switchgrass pollen mediated by the Bxb1 recombinase

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) has great potential as a platform for the production of biobased plastics, chemicals and energy mainly because of its high biomass yield on marginal land and low agricultural inputs. During the last decade, there has been increased interest in the development of thi...

  17. Impact of harvest time and switchgrass cultivar on conversion to sugars and pyrolysis oils using biochemical and thermochemical routes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.), a perennial grass native to much of North America, is undergoing development as a dedicated energy crop. While high-biomass yield is necessary for the development of switchgrass as a bioenergy crop, composition of the biomass and nutrient content as they relate to...

  18. The interaction of harvesting time of day of switchgrass hay and ruminal degradability of supplemental protein to beef steers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to interact AM ( 0600 ) vs PM ( 1800 ) harvest with ruminal degradability of a protein supplement (HI or LO ) to change voluntary intake, apparent digestibility or N retention by steers fed Alamo switchgrass (Panicum virgatum L.) hay. Black steers (255 ± 14kg BW) we...

  19. Stem-boring caterpillars of switchgrass in the midwestern United States

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Lepidopteran stem-borers were collected from switchgrass, Panicum virgatum L., tillers showing symptoms of infestation at seven locations in Illinois and Iowa, with additional observations made on larval and adult activity. Blastobasis repartella (Dietz)(Coleophoridae), whose only known host is swit...

  20. Switchgrass biochar effects on soil microbial dynamics and wheat yield in two soils from different regions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We assessed microbial activity and community composition of two distinct (clayey) soil types (a Colorado Aridisol (CO) and a Virginia Alfisol (VA) ) following the application of switchgrass (Panicum virgatum) biochar applied at four treatment levels (0, 2.5%, 5%, and 10% w:w) for wheat production (T...

  1. Abolishing activity against ascorbate in a cytosolic ascorbate peroxidase from switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is being developed as a bioenergy species. Recently an early version of its genome has been released permitting a route to the cloning and analysis of key proteins. Ascorbate peroxidases (APx) are an important part of the antioxidant defense system of plant cells a...

  2. Temporal and spatial variation in switchgrass biomass composition and theoretical ethanol yield

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Information on temporal and spatial variation in switchgrass (Panicum virgatum L.) biomass composition as it affects ethanol yield (L Mg-1) at a biorefinery and ethanol production (L ha-1) at the field scale has previously not been available. Switchgrass biomass samples were collected from a region...

  3. Structural analysis of pyrolytic lignins isolated from switchgrass fast pyrolysis oil

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Structural characterization of lignin extracted from the bio-oil produced by fast pyrolysis of switchgrass (Panicum virgatum) is reported. This new information is important to understanding the utility of lignin as a chemical feedstock in a pyrolysis based biorefinery. Pyrolysis induces a variety of...

  4. Grass invasion into switchgrass managed for biomass energy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum) is a warm-season perennial grass and is the model herbaceous perennial bioenergy feedstock. Although it is indigenous to North American grasslands east of the Rocky Mountains and has been planted for forage and conservation purposes for more than 75 years, there is con...

  5. Nitrogen fertility rates and landscape positions impacts on CO2 and CH4 fluxes from a landscape seeded to switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study was conducted in north central US (Bristol, SD) to evaluate the impacts of nitrogen (N) fertility management and landscape positions on carbon dioxide (CO2) and methane (CH4) fluxes from switchgrass (Panicum virgatum L.). The experimental layout was a factorial design of three N levels (l...

  6. Switchgrass response to nitrogen fertilizer across diverse environments in the USA: a regional feedstock partnership report

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Regional Feedstock Partnership is a collaborative effort between the Sun Grant Initiative (through Land Grant Universities), the US Department of Energy, and the US Department of Agriculture. One segment of this partnership is the field-scale evaluation of switchgrass (Panicum virgatum L.) in di...

  7. Sustainable Production of Switchgrass for Biomass Energy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a C4 grass native to the North American tallgrass prairies, which historically extended from Mexico to Canada. It is the model perennial warm-season grass for biomass energy. USDA-ARS in Lincoln, NE has studied switchgrass continuously since 1936. Plot-scale rese...

  8. Plant mortality and natural selection may increase biomass yield in switchgrass swards

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is an important candidate for bioenergy feedstock production, prompting significant efforts to increase the number of breeding programs and the output of those programs. The objective of this experiment was to determine the potential utility of natural selection for...

  9. Sustainability of perennial grass yields as bioenergy feedstock for the southeast

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Warm-season perennial grasses will be part of the biomass production system in the Southeast for the emerging bioenergy industry. Among the candidates for dedicated feedstocks are energy cane (Sacchurum sp.), Miscanthus x gigantius, switchgrass (Panicum virgatum), and napiergrass (Pennistem purpure...

  10. Comparative study of switchgrass cultivars using RNA sequencing technology

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a C4 perennial grass, identified as a promising bioenergy crop. Switchgrass exists in two ecotypes, upland and lowland, which are heterotic, or genetically complementary to each other. The objectives of this study are to assess the potential of SNP markers as a b...

  11. Digestibility and intake of upland switchgrass cultivars

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) cultivars with improved forage quality would fill a forage gap during summer when hot dry weather reduces production of cool-season forages on marginal lands of the Northeastern USA. In this study, we used feeding trials with sheep to determine the forage quality of...

  12. Topsoil depth effects on corn, soybean, and switchgrass production on claypan soils

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Diminished topsoil thickness or depth to claypan (DTC) is a major cause of yield and profit depression in corn (Zea mays L.) and to a lesser extent in soybean (Glycine max [L.]) production on claypan soils. Perennial grasses such as switchgrass (Panicum virgatum L.) may be more resilient to reduced ...

  13. Application of the Smith-Hazel selection index for improving biomass yield and quality of switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Apart from the importance of switchgrass (Panicum virgatum L.) as forage for livestock, it is useful as a high-value cellulosic biofuel feedstock. Breeding for a biofuel crop is complicated by the existence of multiple platforms for conversion of biomass to energy. Our main objective was to investi...

  14. Soil hydraulic properties affected by topsoil thickness in cultivated switchgrass and corn-soybean rotation production systems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Loss of productive topsoil by soil erosion over time can reduce the productive capacity of soil and can significantly affect soil hydraulic properties. This study evaluated the effects of reduced topsoil thickness and perennial switchgrass (Panicum virgatum L.) versus corn (Zea mays L.)/soybean [Gly...

  15. Switchgrass stand establishment: key factors for success

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is not difficult to establish if precipitation is timely and four key management practices are followed. First, purchase certified seed with excellent seed lot quality. Second, develop a good firm seedbed. Third, plant the seed at the proper time, depth, and rate. F...

  16. Genetic polymorphisms of switchgrass revealed by exome capture sequence variation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum) is a perennial grass native to North and Central America that has been cultivated for forage and soil conservation, and recently as a biofuel production crop. Switchgrass and is divided into two ecotypes (lowland and upland) based on habitat, genome ploidy, and phenoty...

  17. N2O emission and soil C sequestration from herbaceous perennial biofuel feedstocks

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Greenhouse gas (GHG) mitigation and renewable, domestic fuels are needed in the United States. Switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerdardii Vitman) are potential bioenergy feedstocks that may meet this need. However, managing perennial grasses for feedstock requires nitro...

  18. Registration of 'liberty' switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    ‘Liberty’ switchgrass (Panicum virgatum L.) is a lowland type cultivar that is adapted to USDA Plant Hardiness Zones 4, 5, and 6 in the Great Plains and Midwest, USA east of 100o W. Longitude and potentially other regions where it has not been tested to date. It was developed for use as a perennia...

  19. A stochastic approach for predicting the profitability of bioenergy grasses

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) and miscanthus (Miscanthus giganteus) have potential to meet a growing demand for renewable energy. Before producers will invest in planting these crops, they need credible estimations of the potential profits. The objective of this study was to examine profitabilit...

  20. Generation of octoploid switchgrass by seedling treatment with mitotic inhibitors

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) exists as multiple cytotypes with octaploid and tetraploid populations occupying distinct, overlapping ranges. These cytotypes tend to show differences in adaptation, yield potential, and other characters, but the specific role of whole genome duplication is not cl...

  1. Impact of switchgrass harvest time on biomass yield and conversion

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a perennial grass native to much of North America being developed as a dedicated energy crop for conversion to biofuels. Breeding efforts are focused on producing high-yielding cultivars that can maintain high yield across multiple environments, including poor so...

  2. Effects of land use change from grassland and wheat to switchgrass in the Southern Great Plains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We have begun an inter-agency, interdisciplinary experiment to observe and quantify some of the effects of the conversion of wheat and pasture lands in northwestern Oklahoma to switchgrass (Panicum virgatum L.) production. Switchgrass is a candidate crop for the production of cellulosic ethanol, an...

  3. Carbon and Water cycling in Southern Great Plains ecosystems converted to switchgrass production

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We report here the initiation of a multi-disciplinary, integrative program to investigate the effects of conversion of traditional southern Great Plains pasture and wheat systems to switchgrass (Panicum virgatum L.) production. The project is based at the USDA-ARS Southern Plains Range Research Stat...

  4. Diversity and population structure of northern switchgrass as revealed though exome capture sequencing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a polyploid, perennial grass species that is native to North America, and is being developed as a future biofuels feedstock crop. Switchgrass is present primarily in two ecotypes: a northern upland ecotype composed of tetraploid and octoploid accessions, and a so...

  5. Switchgrass ecotypes alter microbial contribution to deep-soil C

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a C4, perennial grass that is being developed as a bioenergy crop for the United States. While aboveground biomass production is well documented for switchgrass ecotypes (lowland, upland), little is known about the impact of plant belowground productivity on mic...

  6. Nitrogen and harvest effects on soil properties under rain-fed switchgrass and no-till corn over 9 years: implications for soil quality

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The long-term effects of nitrogen (N) fertilizer rate, harvest timing and residue removal remain relatively unknown under bioenergy crop production but do alter soil properties. Although few explicit field comparisons exist, switchgrass (Panicum virgatum L.) is predicted to improve soil properties s...

  7. Switchgrass cultivars alter microbial contribution to deep soil C in Nebraska

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a C4, perennial grass that is being developed as a bioenergy crop for the United States. While aboveground biomass production is well documented for switchgrass ecotypes (lowland, upland) and cultivars, there has been little focus on the impact of plant belowgro...

  8. N fertilizer and harvest impacts on bioenergy crop contributions to SOC

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant contributions to belowground biomass and soil C stocks are important for developing accurate bioenergy lifecycle models. Switchgrass (Panicum virgatum L.) is a native perennial, cellulosic biofuel feedstock with greater root production compared to corn (Zea mays L.,) and potentially contribute...

  9. Establishing and managing perennial grasses for bioenergy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum) is native to every U.S. state east of the Rocky Mountains, is the most advanced herbaceous perennial bioenergy feedstock, and best management practices (BMPs) have been developed for bioenergy production in most agro-ecoregions. Additionally, big bluestem (Andropogon g...

  10. Regional gene pools for restoration, conservation, and genetic improvement of prairie grasses

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum), big bluestem (Andropogon gerardii), and Indiangrass (Sorghastrum nutans) are native warm-season grasses that have been identified as potential cellulosic bioenergy feedstock crops due to their potential for high yields, perennial life habit, and nutrient use efficienc...

  11. Switchgrass harvest time management can impact biomass yield and nutrient content

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a dedicated energy crop native to much of North America. While high-biomass yield is of significant importance for the development of switchgrass as a bioenergy crop, nutrient content in the biomass as it relates to biofuel conversion efficiency is also critical...

  12. Assessing nitrogen management and claypan soil variability effects on switchgrass using reflectance sensing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The topsoil depth or depth to the claypan (DTC) can be highly variable across the landscape for some Midwest soils. This makes managing crops on these soils difficult because their productivity can be highly variable. Due to the high variability on theses soils, switchgrass (Panicum virgatum L.) h...

  13. Spatial forecasting of switchgrass productivity under current and future climate change scenarios

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Evaluating the potential of alternative energy crops across large geographic regions and over time is necessary to determine if feedstock production is feasible and sustainable in the face of growing production demands and climatic change. Panicum virgatum L., a perennial herbaceous grass, is a prom...

  14. Registration of NE Trailblazer C-1, NE Trailblazer C0, NE Trailblazer C2, NE Trailblazer C3, NE Trailblazer C4, and NE Trailblazer C5 Switchgrass Germplasms

    Technology Transfer Automated Retrieval System (TEKTRAN)

    NE Trailblazer C-1 (GP-101, PI 672015), NE Trailblazer C0 (GP-100, PI 672014), NE Trailblazer C2 (GP-102, PI 672016), NE Trailblazer C3 (GP-103, PI 672017), NE Trailblazer C4 (GP-104, PI 672018), and NE Trailblazer C5 (GP-105, PI 672019) switchgrass (Panicum virgatum L.) germplasms were released by ...

  15. The WRKY transcription factor family and senescence in switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background: Early aerial senescence in switchgrass (Panicum virgatum) can significantly limit biomass yields. WRKY transcription factors that can regulate senescence could be used to reprogram senescence and enhance biomass yields. Methods: All potential WRKY genes present in the version 1.0 of the...

  16. Aged Switchgrass Seed Lot’s Response to Dormancy-breaking Chemicals

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This work examined the effects of sodium nitroprusside, potassium ferrocyanide and hydrogen peroxide on the germination of eight lots of after-ripened switchgrass (Panicum virgatum L.) seeds. Seed germination was significantly stimulated by all three chemicals, across all seed lots over the time co...

  17. Perennial biomass grasses and the Mason-Dixon Line: Comparative productivity across latitudes in the southern Great Plains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding latitudinal adaptation of switchgrass (Panicum virgatum L.) and miscanthus (Miscanthus x giganteus J. M. Greef & Deuter ex Hodk. & Renvoize) to the southern Great Plains is key to maximizing productivity by matching each grass variety to its ideal production environment. Objectives of...

  18. Life cycle analysis of switchgrass converted via pyrolysis, gasification, and fermentation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The US is promoting and developing low carbon fuel sources. Perennial bioenergy crops such as switchgrass (Panicum virgatum L.) are one viable source for low carbon transportation fuels. The objective is to determine the net greenhouse gas (GHG) emissions from different conversion methods (pyrolysi...

  19. Transmission of Switchgrass mosaic virus by Graminella aureovitatta

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass mosaic virus (SwMV) was identified in switchgrass (Panicum virgatum) and was proposed as a new marafivirus based on its genome sequence and comparison with its closest relative, Maize rayado fino virus (MRFV), a type member of the genus, Marafivirus. MRFV only infects maize (Zea mays) an...

  20. Detection and characterization of the first North American mastrevirus in Switchgrass

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Virus infections have the potential to reduce biomass yields in energy crops, including Panicum virgatum (switchgrass). As a first step towards managing virus-induced biomass reductions, deep sequencing was used to identify viruses associated with mosaic symptoms in switch grass, which detected thre...

  1. Production and supply logistics of switchgrass as an energy feedstock

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Switchgrass (Panicum virgatum L.) is a warm-season (C4), perennial grass that is native to the tallgrass ecoregion of North America (Figure 1). Historically, switchgrass has been used for summer forage, hay, ensiling, or in conservation plantings. At the end of the 20th century, switchgrass was de...

  2. Switchgrass and pecan biochar amendments to a sandy coastal soil

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Sandy soils of the wet, warm SE Coastal Plain have poor physical characteristics and low carbon contents. To improve soil properties, we added switchgrass (Panicum virgatum) and non-activated pecan (Carya illinoinensis) biochar. Switchgrass was ground to a fine powder and added to soil at rates of 0...

  3. Influence of pecan biochar on physical properties of a Norfolk loamy sand

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Because the southeastern USA Coastal Plain has high temperatures and abundant rainfall, its sandy soils have poor physical characteristics and low carbon contents. To increase soil carbon (C), we added switchgrass (Panicum virgatum) and non-activated recalcitrant pecan biochar. Biochar was developed...

  4. 7 CFR 361.4 - Inspection at the port of first arrival.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 5 2012-01-01 2012-01-01 false Inspection at the port of first arrival. 361.4 Section 361.4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH..., flax, millet, proso, soybeans, cowpeas, field peas, or field beans that are not being imported...

  5. 7 CFR 361.4 - Inspection at the port of first arrival.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 5 2011-01-01 2011-01-01 false Inspection at the port of first arrival. 361.4 Section 361.4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH..., flax, millet, proso, soybeans, cowpeas, field peas, or field beans that are not being imported...

  6. 7 CFR 361.4 - Inspection at the port of first arrival.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 5 2014-01-01 2014-01-01 false Inspection at the port of first arrival. 361.4 Section 361.4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH..., flax, millet, proso, soybeans, cowpeas, field peas, or field beans that are not being imported...

  7. 7 CFR 361.4 - Inspection at the port of first arrival.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 5 2013-01-01 2013-01-01 false Inspection at the port of first arrival. 361.4 Section 361.4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH..., flax, millet, proso, soybeans, cowpeas, field peas, or field beans that are not being imported...

  8. 7 CFR 361.4 - Inspection at the port of first arrival.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Inspection at the port of first arrival. 361.4 Section 361.4 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH..., flax, millet, proso, soybeans, cowpeas, field peas, or field beans that are not being imported...

  9. Microsatellite Variations of Elite Setaria Varieties Released during Last Six Decades in China.

    PubMed

    Jia, Guanqing; Liu, Xiaotong; Schnable, James C; Niu, Zhengang; Wang, Chunfang; Li, Yuhui; Wang, Shujun; Wang, Suying; Liu, Jinrong; Guo, Erhu; Zhi, Hui; Diao, Xianmin

    2015-01-01

    Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, a panel of foxtail millet elite varieties, which were released in the last sixty years in different geographical regions of China, was characterized using microsatellite markers (SSRs). A clear separation of two subpopulations corresponding to the two eco-geographical regions of foxtail millet production in China was identified by the dataset, which also indicated that in more recently released elite varieties, large quantities of accessions have been transferred from spring-sowing to summer-sowing ecotypes, likely as a result of breeding response to planting configurations. An association mapping study was conducted to identify loci controlling traits of major agronomic interest. Furthermore, selective sweeps involved in improvement of foxtail millet were identified as multi-diverse minor effect loci controlling different agronomic traits during the long-term improvement of elite varieties. Our results highlight the effect of transition of planting configuration and breeding preference on genetic evolvement of crop species.

  10. Wheat glutenin alters protein body structure in maize but not levels of endogenous storage proteins

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cereal grains are an important nutritional source of amino acids for humans and livestock worldwide. They belong to three subfamilies of grasses or Poaceae. Wheat, barley, and oats belong to the subfamily Pooideae, rice to the Ehrhartoideae, and maize, millets, sugarcane, and sorghum to the Panicoid...

  11. Genome-Wide Comparison of Magnaporthe Species Reveals a Host-Specific Pattern of Secretory Proteins and Transposable Elements

    PubMed Central

    Gowda, Malali

    2016-01-01

    Blast disease caused by the Magnaporthe species is a major factor affecting the productivity of rice, wheat and millets. This study was aimed at generating genomic information for rice and non-rice Magnaporthe isolates to understand the extent of genetic variation. We have sequenced the whole genome of the Magnaporthe isolates, infecting rice (leaf and neck), finger millet (leaf and neck), foxtail millet (leaf) and buffel grass (leaf). Rice and finger millet isolates infecting both leaf and neck tissues were sequenced, since the damage and yield loss caused due to neck blast is much higher as compared to leaf blast. The genome-wide comparison was carried out to study the variability in gene content, candidate effectors, repeat element distribution, genes involved in carbohydrate metabolism and SNPs. The analysis of repeat element footprints revealed some genes such as naringenin, 2-oxoglutarate 3-dioxygenase being targeted by Pot2 and Occan, in isolates from different host species. Some repeat insertions were host-specific while other insertions were randomly shared between isolates. The distributions of repeat elements, secretory proteins, CAZymes and SNPs showed significant variation across host-specific lineages of Magnaporthe indicating an independent genome evolution orchestrated by multiple genomic factors. PMID:27658241

  12. Gluten-Free Diet Guide for Families

    MedlinePlus

    ... nutsbeans and seeds Millet Montina™ Potato starch Potato flour Quinoa Rice rice bran Sago Sorghum Soy (soya) Tapioca Teff ... weight gain. Constipation/diarrhea If only processed white rice is used in replacement of wheat flour, the low fiber diet may lead to constipation. ...

  13. What Can I Eat?

    MedlinePlus

    ... other starch-containing foods are naturally gluten-free: Rice Cassava Corn (maize) Soy Potato Tapioca Beans Sorghum Quinoa Millet Buckwheat groats (also known as kasha) Arrowroot Amaranth Teff Flax Chia Yucca Gluten-free oats Nut flours There has been some research that some naturally ...

  14. Effects of feeding high-linoleate safflower seeds on postpartum reproduction in beef cows

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Two experiments were conducted to evaluate reproductive responses to supplemental high-linoleate safflower seeds in postpartum beef cows. In Exp. 1, 18 primiparous, crossbred beef cows (BW 411 ± 24.3 kg) were fed Foxtail millet hay at 1.68% of BW (DM basis) and either a low-fat control (Control: 63...

  15. 40 CFR 180.571 - Mesotrione; tolerances for residues.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ..., kernel plus cob with husks removed 0.01 Corn, sweet, stover 1.5 Cranberry 0.02 Flax, seed 0.01 Grass, forage 0.01 Grass, hay 0.01 Grass, seed screenings 0.10 Grass, straw 0.10 Lingonberry 0.01 Millet,...

  16. 40 CFR 180.571 - Mesotrione; tolerances for residues.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., kernel plus cob with husks removed 0.01 Corn, sweet, stover 1.5 Cranberry 0.02 Flax, seed 0.01 Grass, forage 0.01 Grass, hay 0.01 Grass, seed screenings 0.10 Grass, straw 0.10 Lingonberry 0.01 Millet,...

  17. 40 CFR 180.571 - Mesotrione; tolerances for residues.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ..., kernel plus cob with husks removed 0.01 Corn, sweet, stover 1.5 Cranberry 0.02 Flax, seed 0.01 Grass, forage 0.01 Grass, hay 0.01 Grass, seed screenings 0.10 Grass, straw 0.10 Lingonberry 0.01 Millet,...

  18. 40 CFR 180.571 - Mesotrione; tolerances for residues.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ..., kernel plus cob with husks removed 0.01 Corn, sweet, stover 1.5 Cranberry 0.02 Flax, seed 0.01 Grass, forage 0.01 Grass, hay 0.01 Grass, seed screenings 0.10 Grass, straw 0.10 Lingonberry 0.01 Millet,...

  19. 40 CFR 180.571 - Mesotrione; tolerances for residues.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ..., kernel plus cob with husks removed 0.01 Corn, sweet, stover 1.5 Cranberry 0.02 Flax, seed 0.01 Grass, forage 0.01 Grass, hay 0.01 Grass, seed screenings 0.10 Grass, straw 0.10 Lingonberry 0.01 Millet,...

  20. 40 CFR 180.639 - Flubendiamide; tolerances for residues.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., proso, hay 0.04 Millet, proso, straw 0.07 Oats, forage 0.15 Oats, hay 0.04 Oats, straw 0.07 Rye, forage 0.15 Rye, straw 0.07 Teosinte, forage 0.15 Teosinte, hay 0.04 Teosinte, straw 0.07 Triticale,...