A Self-consistent Cloud Model for Brown Dwarfs and Young Giant Exoplanets: Comparison with Photometric and Spectroscopic Observations

NASA Astrophysics Data System (ADS)

Charnay, B.; Bézard, B.; Baudino, J.-L.; Bonnefoy, M.; Boccaletti, A.; Galicher, R.

2018-02-01

We developed a simple, physical, and self-consistent cloud model for brown dwarfs and young giant exoplanets. We compared different parametrizations for the cloud particle size, by fixing either particle radii or the mixing efficiency (parameter f sed), or by estimating particle radii from simple microphysics. The cloud scheme with simple microphysics appears to be the best parametrization by successfully reproducing the observed photometry and spectra of brown dwarfs and young giant exoplanets. In particular, it reproduces the L–T transition, due to the condensation of silicate and iron clouds below the visible/near-IR photosphere. It also reproduces the reddening observed for low-gravity objects, due to an increase of cloud optical depth for low gravity. In addition, we found that the cloud greenhouse effect shifts chemical equilibrium, increasing the abundances of species stable at high temperature. This effect should significantly contribute to the strong variation of methane abundance at the L–T transition and to the methane depletion observed on young exoplanets. Finally, we predict the existence of a continuum of brown dwarfs and exoplanets for absolute J magnitude = 15–18 and J-K color = 0–3, due to the evolution of the L–T transition with gravity. This self-consistent model therefore provides a general framework to understand the effects of clouds and appears well-suited for atmospheric retrievals.

Clouds and hazes in exoplanets and brown dwarfs

NASA Astrophysics Data System (ADS)

Morley, Caroline Victoria

The formation of clouds significantly alters the spectra of cool substellar atmospheres from terrestrial planets to brown dwarfs. In cool planets like Earth and Jupiter, volatile species like water and ammonia condense to form ice clouds. In hot planets and brown dwarfs, iron and silicates instead condense, forming dusty clouds. Irradiated methane-rich planets may have substantial hydrocarbon hazes. During my dissertation, I have studied the impact of clouds and hazes in a variety of substellar objects. First, I present results for cool brown dwarfs including clouds previously neglected in model atmospheres. Model spectra that include sulfide and salt clouds can match the spectra of T dwarf atmospheres; water ice clouds will alter the spectra of the newest and coldest brown dwarfs, the Y dwarfs. These sulfide/salt and ice clouds potentially drive spectroscopic variability in these cool objects, and this variability should be distinguishable from variability caused by hot spots. Next, I present results for small, cool exoplanets between the size of Earth and Neptune. They likely have sulfide and salt clouds and also have photochemical hazes caused by stellar irradiation. Vast resources have been dedicated to characterizing the handful of super Earths and Neptunes accessible to current telescopes, yet of the planets smaller than Neptune studied to date, all have radii in the near-infrared consistent with being constant in wavelength, likely showing that these small planets are consistently enshrouded in thick hazes and clouds. For the super Earth GJ 1214b, very thick, lofted clouds of salts or sulfides in high metallicity (1000x solar) atmospheres create featureless transmission spectra in the near-infrared. Photochemical hazes also create featureless transmission spectra at lower metallicities. For the Neptune-sized GJ 436b, its thermal emission and transmission spectra combine indicate a high metallicity atmosphere, potentially heated by tides and affected by disequilibrium chemistry. I show that despite the challenges, there are promising avenues for understanding small planets: by observing thermal emission and reflected light, we can break the degeneracies and con- strain the atmospheric compositions. These future observations will provide rich diagnostics of molecules and clouds in small planets.

ARC-2006-ACD06-0179-007

NASA Image and Video Library

2006-10-12

Ames holds a Media Day at the Hypervelocity Free Flight facility where Ames is conducting high-speed tests of small models of the agency's new Orion CEV to learn about stability during flight. The hypervelocity test facility uses a gun to shoot Orion models between 0.5 and l.5 inches (1.25 - 3.75 centimeters in diameter. The facility can conduct experiments with speeds up to 19,000 miles per hour (30,400 kilometers per hour) - ABC Camerman in forground, Wayne Freedman ABC reporter, Jeff Brown (Ames-ASA), John Bluck (AMES PAO)

Middle Level Learning.

ERIC Educational Resources Information Center

Wyman, Richard M., Jr.; Young, Katherine A.; Sliger, Bruce; Kafi, Patricia; Singer, Alan; Lamme, Linda Leonard

1998-01-01

Presents five brief articles related to middle-level learning. The articles are, "Using Children's Diaries to Teach the Oregon Trail"; "Living the Geography of Joseph and Temperance Brown"; "The ABCs of Small Grant Acquisition for Social Studies"; "Isomo Loruko: The Yoruba Naming Ceremony"; and "Child…

A global cloud map of the nearest known brown dwarf.

PubMed

Crossfield, I J M; Biller, B; Schlieder, J E; Deacon, N R; Bonnefoy, M; Homeier, D; Allard, F; Buenzli, E; Henning, Th; Brandner, W; Goldman, B; Kopytova, T

2014-01-30

Brown dwarfs--substellar bodies more massive than planets but not massive enough to initiate the sustained hydrogen fusion that powers self-luminous stars--are born hot and slowly cool as they age. As they cool below about 2,300 kelvin, liquid or crystalline particles composed of calcium aluminates, silicates and iron condense into atmospheric 'dust', which disappears at still cooler temperatures (around 1,300 kelvin). Models to explain this dust dispersal include both an abrupt sinking of the entire cloud deck into the deep, unobservable atmosphere and breakup of the cloud into scattered patches (as seen on Jupiter and Saturn). However, hitherto observations of brown dwarfs have been limited to globally integrated measurements, which can reveal surface inhomogeneities but cannot unambiguously resolve surface features. Here we report a two-dimensional map of a brown dwarf's surface that allows identification of large-scale bright and dark features, indicative of patchy clouds. Monitoring suggests that the characteristic timescale for the evolution of global weather patterns is approximately one day.

Infrared rotational light curves on Jupiter induced by wave activities and cloud patterns andimplications on brown dwarfs

NASA Astrophysics Data System (ADS)

Ge, Huazhi; Zhang, Xi; Fletcher, Leigh; Orton, Glenn S.; Sinclair, James Andrew; Fernandes,, Joshua; Momary, Thomas W.; Warren, Ari; Kasaba, Yasumasa; Sato, Takao M.; Fujiyoshi, Takuya

2017-10-01

Many brown dwarfs exhibit infrared rotational light curves with amplitude varying from a fewpercent to twenty percent (Artigau et al. 2009, ApJ, 701, 1534; Radigan et al. 2012, ApJ, 750,105). Recently, it was claimed that weather patterns, especially planetary-scale waves in thebelts and cloud spots, are responsible for the light curves and their evolutions on brown dwarfs(Apai et al. 2017, Science, 357, 683). Here we present a clear relationship between the direct IRemission maps and light curves of Jupiter at multiple wavelengths, which might be similar withthat on cold brown dwarfs. Based on infrared disk maps from Subaru/COMICS and VLT/VISIR,we constructed full maps of Jupiter and rotational light curves at different wavelengths in thethermal infrared. We discovered a strong relationship between the light curves and weatherpatterns on Jupiter. The light curves also exhibit strong multi-bands phase shifts and temporalvariations, similar to that detected on brown dwarfs. Together with the spectra fromTEXES/IRTF, our observations further provide detailed information of the spatial variations oftemperature, ammonia clouds and aerosols in the troposphere of Jupiter (Fletcher et al. 2016,Icarus, 2016 128) and their influences on the shapes of the light curves. We conclude that waveactivities in Jupiter’s belts (Fletcher et al. 2017, GRL, 44, 7140), cloud holes, and long-livedvortices such as the Great Red Spot and ovals control the shapes of IR light curves and multi-wavelength phase shifts on Jupiter. Our finding supports the hypothesis that observed lightcurves on brown dwarfs are induced by planetary-scale waves and cloud spots.

Exoplanet Meteorology: Characterizing the Atmospheres of Directly Imaged Sub-Stellar Objects

NASA Astrophysics Data System (ADS)

Rajan, Abhijith; Gemini Planet Imager, Extrasolar Planets and Systems Imaging Group

2018-01-01

I study the structure, composition and dynamic evolution of directly imaged exoplanet and brown dwarf atmospheres, using spectrophotometric data collected from a range of ground and space based instrumentation. As part of my dissertation, I led studies exploring the atmospheres of brown dwarfs to search for weather variations, and characterized the near and mid infrared SEDs of imaged exoplanets to estimate their fundamental parameters. To understand the evolution of weather on brown dwarfs we conducted a multi-epoch study monitoring of 4 ultracool, T5 - Y0, brown dwarfs in the J-band to search for photometric variability. These cool brown dwarfs are predicted to have salt and sulfide clouds condensing in their upper atmosphere. The study found that cool brown dwarfs, fit with higher opacity clouds, were more likely to be variable. Through data taken with the Hubble Space Telescope and Gemini telescope we characterized the atmospheres of directly imaged exoplanets. For HR 8799, in near IR wavelengths unobservable from the ground, we constrained the presence of clouds in the outer planets. As a member of the Gemini Planet Imager Exoplanet Survey team, I analyzed archival HST data and examined the near-infrared colors of HD 106906b as seen with GPI, concluding that the companion shows weak evidence of a circumplanetary dust disk or cloud. Finally, by combining data spanning 1 - 5 um for the low mass Jupiter-like exoplanet, 51 Eri b, we found a cool effective temperature best fit by a patchy cloud atmosphere. This makes the planet an excellent candidate for future variability studies with the James Webb Space Telescope.

Using multi-source satellite data to assess snow-cover change in Qinghai-Tibetan Plateau in last decade

NASA Astrophysics Data System (ADS)

Jiang, Y.; Chen, F.; Gao, Y.; Barlage, M. J.

2017-12-01

Snow cover in Qinghai-Tibetan Plateau (QTP) is a critical component of water cycle and affects regional climate of East Asia. Satellite data from three different sources (i.e., FY3A/B/C, MODIS and IMS) were used to analyze the QTP fractional-snow-cover (FSC) change and associated uncertainties in the last decade. To reduce the high percentage of cloud in FY3A/B/C and MODIS, a four-step cloud removal procedure was applied and effectively reduced the cloud percentage from 40.8-56.1% to 2.2­-­3.3%. The averaged error introduced by the cloud removal procedure was about 2% estimated by a random sampling method. Results show that the snow cover in QTP significantly decreased in recent 5 years. Three data sets (FY3B, MODIS and IMS) showed significant decreased annual FSC at all elevation bands from 2012-2016, and a significant shorter snow season with delayed snow onset and earlier melting. Both IMS and MODIS had a slightly decline annual FSC from 2000 to 3000 m, while MODIS FSC slightly decreased in 2002-2016 and IMS FSC slightly increased from 2006-2016 in the region with elevation higher than 3000 m. Results also show significant uncertainties among the five data sets (FY3A/B/C, MODIS, IMS), although they showed similar fluctuations of daily FSC. IMS had largest snow-cover extent and highest daily FSC due to its multi data sources. FY3A/C and MODIS (observed in the morning) had around 5% higher mean FSC than FY3B (observed in the afternoon) due to the 3 hours detection time gap. The relative error of daily FSC (taking MODIS as `truth') between FY3A/B/C, IMS and MODIS is 23%, -35%, 8% and 63%, respectively, averaged in five elevation bands in 2015-2017.

Cloud Atlas: Rotational Modulations in the L/T Transition Brown Dwarf Companion HN Peg B

NASA Technical Reports Server (NTRS)

Zhou, Yifan; Apai, Daniel; Metchev, Stanimir; Lew, Ben W. P.; Schneider, Glenn; Marley, Mark S.; Karalidi, Theodora; Manjavacas, Elena; Bedin, Luigi R.; Cowan, Nicolas B.;

Cloud Atlas: Rotational Modulations in the L/T Transition Brown Dwarf Companion HN Peg B

NASA Astrophysics Data System (ADS)

Zhou, Yifan; Apai, Dániel; Metchev, Stanimir; Lew, Ben W. P.; Schneider, Glenn; Marley, Mark S.; Karalidi, Theodora; Manjavacas, Elena; Bedin, Luigi R.; Cowan, Nicolas B.; Miles-Páez, Paulo A.; Lowrance, Patrick J.; Radigan, Jacqueline; Burgasser, Adam J.

2018-03-01

Time-resolved observations of brown dwarfs’ rotational modulations provide powerful insights into the properties of condensate clouds in ultra-cool atmospheres. Multi-wavelength light curves reveal cloud vertical structures, condensate particle sizes, and cloud morphology, which directly constrain condensate cloud and atmospheric circulation models. We report results from Hubble Space Telescope/Wide Field Camera 3 near-infrared G141 taken in six consecutive orbits observations of HN Peg B, an L/T transition brown dwarf companion to a G0V type star. The best-fit sine wave to the 1.1–1.7 μm broadband light curve has an amplitude of 1.206% ± 0.025% and period of 15.4 ± 0.5 hr. The modulation amplitude has no detectable wavelength dependence except in the 1.4 μm water absorption band, indicating that the characteristic condensate particle sizes are large (>1 μm). We detect significantly (4.4σ) lower modulation amplitude in the 1.4 μm water absorption band and find that HN Peg B’s spectral modulation resembles those of early T type brown dwarfs. We also describe a new empirical interpolation method to remove spectral contamination from the bright host star. This method may be applied in other high-contrast time-resolved observations with WFC3.

Cloud structure of the nearest brown dwarfs. II: High-amplitude variability for Luhman 16 A and B in and out of the 0.99 μm FeH feature

DOE PAGES

Buenzli, Esther; Marley, Mark S.; Apai, Daniel; ...

2015-10-20

The re-emergence of the 0.99 μm FeH feature in brown dwarfs of early- to mid-T spectral type has been suggested as evidence for cloud disruption where flux from deep, hot regions below the Fe cloud deck can emerge. The same mechanism could account for color changes at the L/T transition and photometric variability. We present the first observations of spectroscopic variability of brown dwarfs covering the 0.99 μm FeH feature. We observed the spatially resolved very nearby brown dwarf binary WISE J104915.57–531906.1 (Luhman 16AB), a late-L and early-T dwarf, with Hubble Space Telescope/WFC3 in the G102 grism at 0.8–1.15 μm.more » We find significant variability at all wavelengths for both brown dwarfs, with peak-to-valley amplitudes of 9.3% for Luhman 16B and 4.5% for Luhman 16A. This represents the first unambiguous detection of variability in Luhman 16A. We estimate a rotational period between 4.5 and 5.5 hr, very similar to Luhman 16B. Variability in both components complicates the interpretation of spatially unresolved observations. The probability for finding large amplitude variability in any two brown dwarfs is less than 10%. Our finding may suggest that a common but yet unknown feature of the binary is important for the occurrence of variability. For both objects, the amplitude is nearly constant at all wavelengths except in the deep K i feature below 0.84 μm. No variations are seen across the 0.99 μm FeH feature. The observations lend strong further support to cloud height variations rather than holes in the silicate clouds, but cannot fully rule out holes in the iron clouds. Here, we re-evaluate the diagnostic potential of the FeH feature as a tracer of cloud patchiness.« less

A Cloud-Based Car Parking Middleware for IoT-Based Smart Cities: Design and Implementation

PubMed Central

Ji, Zhanlin; Ganchev, Ivan; O'Droma, Máirtín; Zhao, Li; Zhang, Xueji

2014-01-01

This paper presents the generic concept of using cloud-based intelligent car parking services in smart cities as an important application of the Internet of Things (IoT) paradigm. This type of services will become an integral part of a generic IoT operational platform for smart cities due to its pure business-oriented features. A high-level view of the proposed middleware is outlined and the corresponding operational platform is illustrated. To demonstrate the provision of car parking services, based on the proposed middleware, a cloud-based intelligent car parking system for use within a university campus is described along with details of its design, implementation, and operation. A number of software solutions, including Kafka/Storm/Hbase clusters, OSGi web applications with distributed NoSQL, a rule engine, and mobile applications, are proposed to provide ‘best’ car parking service experience to mobile users, following the Always Best Connected and best Served (ABC&S) paradigm. PMID:25429416

Significance of brown dwarfs

NASA Technical Reports Server (NTRS)

Black, D. C.

1986-01-01

The significance of brown dwarfs for resolving some major problems in astronomy is discussed. The importance of brown dwarfs for models of star formation by fragmentation of molecular clouds and for obtaining independent measurements of the ages of stars in binary systems is addressed. The relationship of brown dwarfs to planets is considered.

The Impact of Clouds and Hazes in Substellar Atmospheres

NASA Astrophysics Data System (ADS)

Morley, Caroline; Fortney, Jonathan J.; Marley, Mark S.

2016-01-01

The formation of clouds significantly alters the spectra of cool substellar atmospheres from terrestrial planets to brown dwarfs. In cool planets like Earth and Jupiter, volatile species like water and ammonia condense to form ice clouds. In hot planets and brown dwarfs, iron and silicates instead condense, forming dusty clouds. Irradiated methane-rich planets may have substantial hydrocarbon hazes. During my thesis, I have studied the impact of clouds and hazes in a variety of substellar objects. First, I present results for cool brown dwarfs including clouds previously neglected in model atmospheres. Model spectra that include sulfide and salt clouds can match the spectra of T dwarf atmospheres; water ice clouds will alter the spectra of the newest and coldest brown dwarfs, the Y dwarfs. These sulfide/salt and ice clouds potentially drive spectroscopic variability in these cool objects, and this variability should be distinguishable from variability caused by hot spots.Next, I present results for small, cool exoplanets between the size of Earth and Neptune, so-called super Earths. They likely have sulfide and salt clouds and also have photochemical hazes caused by stellar irradiation. Vast resources have been dedicated to characterizing the handful of super Earths accessible to current telescopes, yet of the planets smaller than Neptune studied to date, all have radii in the near-infrared consistent with being constant in wavelength, likely showing that these small planets are consistently enshrouded in thick hazes and clouds. Very thick, lofted clouds of salts or sulfides in high metallicity (1000× solar) atmospheres create featureless transmission spectra in the near-infrared. Photochemical hazes with a range of particle sizes also create featureless transmission spectra at lower metallicities. I show that despite these challenges, there are promising avenues for understanding this class of small planets: by observing the thermal emission and reflectivity of small planets, we can break the degeneracies and better constrain the atmospheric compositions. These observations may provide rich diagnostics of molecules and clouds in small planets, in contrast to the limited success to date.

Ionisation and discharge in cloud-forming atmospheres of brown dwarfs and extrasolar planets

NASA Astrophysics Data System (ADS)

Helling, Ch; Rimmer, P. B.; Rodriguez-Barrera, I. M.; Wood, Kenneth; Robertson, G. B.; Stark, C. R.

2016-07-01

Brown dwarfs and giant gas extrasolar planets have cold atmospheres with rich chemical compositions from which mineral cloud particles form. Their properties, like particle sizes and material composition, vary with height, and the mineral cloud particles are charged due to triboelectric processes in such dynamic atmospheres. The dynamics of the atmospheric gas is driven by the irradiating host star and/or by the rotation of the objects that changes during its lifetime. Thermal gas ionisation in these ultra-cool but dense atmospheres allows electrostatic interactions and magnetic coupling of a substantial atmosphere volume. Combined with a strong magnetic field \\gg {{B}\\text{Earth}} , a chromosphere and aurorae might form as suggested by radio and x-ray observations of brown dwarfs. Non-equilibrium processes like cosmic ray ionisation and discharge processes in clouds will increase the local pool of free electrons in the gas. Cosmic rays and lighting discharges also alter the composition of the local atmospheric gas such that tracer molecules might be identified. Cosmic rays affect the atmosphere through air showers in a certain volume which was modelled with a 3D Monte Carlo radiative transfer code to be able to visualise their spacial extent. Given a certain degree of thermal ionisation of the atmospheric gas, we suggest that electron attachment to charge mineral cloud particles is too inefficient to cause an electrostatic disruption of the cloud particles. Cloud particles will therefore not be destroyed by Coulomb explosion for the local temperature in the collisional dominated brown dwarf and giant gas planet atmospheres. However, the cloud particles are destroyed electrostatically in regions with strong gas ionisation. The potential size of such cloud holes would, however, be too small and might occur too far inside the cloud to mimic the effect of, e.g. magnetic field induced star spots.

Characterizing Water Ice Clouds on the Coldest Known Brown Dwarf

NASA Astrophysics Data System (ADS)

Luhman, Kevin; Burgasser, Adam; Cushing, Michael; Esplin, Taran; Fortney, Jonathan; Hardegree-Ullman, Kevin; Marley, Mark; Morley, Caroline; Schneider, Adam; Trucks, Jesica

2014-12-01

We have conducted a search for high proper motion brown dwarfs using multi-epoch all-sky mid-infrared images from the WISE satellite. Through this work, we have discovered an object with a parallactic distance of 2.3 pc and a temperature of 250 K, making it the 4th closest neighbor of the Sun, and the coldest known brown dwarf. Because of its extreme proximity and temperature, it represents an unparalleled laboratory for studying planet-like atmospheres in an unexplored temperature regime. We propose to photometrically monitor this object with IRAC to 1) detect and characterize water ice clouds in its atmosphere via the short-term variations induced during rotation and 2) constrain the long-term evolution of its clouds across a period of months.

Isolated and companion young brown dwarfs in the taurus and chamaeleon molecular clouds

PubMed

Tamura; Itoh; Oasa; Nakajima

1998-11-06

Infrared imaging observations have detected a dozen faint young stellar objects (YSOs) in the Taurus and Chamaeleon molecular clouds whose near-infrared colors are similar to those of classical T Tauri stars (TTS). They are around four magnitudes fainter than low-luminosity YSOs in Taurus detected in earlier surveys and as much as eight magnitudes fainter than typical TTS. The extreme faintness of the objects and their lower luminosity relative to previously identified brown dwarfs in the Pleiades indicate that these faint YSOs are very young brown dwarfs on the order of 1 million years old.

Orographic Condensation at the South Pole of Titan

NASA Astrophysics Data System (ADS)

Corlies, Paul; Hayes, Alexander; Adamkovics, Mate

2016-10-01

Although many clouds have been observed on Titan over the past two decades (Griffith et al. 1998, Rodriquez et al 2009, Brown et al. 2010), only a handful of clouds have been analyzed in detail (Griffith et al 2005, Brown et al 2009, Adamkovics et al 2010). In light of new data and better radiative transfer (RT) modelling, we present here a reexamination of one of these cloud systems observed in March 2007, formerly identified as ground fog (Brown et al 2009), using the Cassini VIMS instrument. Combining our analysis with RADAR observations we attempt to understand the connection and correlation between this low altitude atmospheric phenomenon and the local topography, suggesting instead, a topographically driven (orographic) cloud formation mechanism. This analysis would present the first links between cloud formation and topography on Titan, and has valuable implications in understanding additional cloud formation mechanisms, allowing for a better understanding of Titan's atmospheric dynamics.We will also present an update on an ongoing ground based observation campaign looking for clouds on Titan. This campaign, begun back in April 2014, has been (nearly) continuously monitoring Titan for ongoing cloud activity. Although a variety of telescope and instruments have been used in an effort to best capture the onset of cloud activity expected at Titan's North Pole, no cloud outbursts have yet been observed from the ground (though frequent observations have been made with Cassini ISS/VIMS). This is interesting because it further suggests a developing dichotomy between Titan's seasons, since clouds were observable from the ground during southern summer. Thus, monitoring the onset of large scale cloud activity at Titan's North Pole will be crucial to understanding Titan's hydrologic cycle on seasonal timescales.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buenzli, Esther; Marley, Mark S.; Apai, Daniel

The re-emergence of the 0.99 μm FeH feature in brown dwarfs of early- to mid-T spectral type has been suggested as evidence for cloud disruption where flux from deep, hot regions below the Fe cloud deck can emerge. The same mechanism could account for color changes at the L/T transition and photometric variability. We present the first observations of spectroscopic variability of brown dwarfs covering the 0.99 μm FeH feature. We observed the spatially resolved very nearby brown dwarf binary WISE J104915.57–531906.1 (Luhman 16AB), a late-L and early-T dwarf, with Hubble Space Telescope/WFC3 in the G102 grism at 0.8–1.15 μm.more » We find significant variability at all wavelengths for both brown dwarfs, with peak-to-valley amplitudes of 9.3% for Luhman 16B and 4.5% for Luhman 16A. This represents the first unambiguous detection of variability in Luhman 16A. We estimate a rotational period between 4.5 and 5.5 hr, very similar to Luhman 16B. Variability in both components complicates the interpretation of spatially unresolved observations. The probability for finding large amplitude variability in any two brown dwarfs is less than 10%. Our finding may suggest that a common but yet unknown feature of the binary is important for the occurrence of variability. For both objects, the amplitude is nearly constant at all wavelengths except in the deep K i feature below 0.84 μm. No variations are seen across the 0.99 μm FeH feature. The observations lend strong further support to cloud height variations rather than holes in the silicate clouds, but cannot fully rule out holes in the iron clouds. Here, we re-evaluate the diagnostic potential of the FeH feature as a tracer of cloud patchiness.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buenzli, Esther; Marley, Mark S.; Apai, Dániel

The re-emergence of the 0.99 μm FeH feature in brown dwarfs of early- to mid-T spectral type has been suggested as evidence for cloud disruption where flux from deep, hot regions below the Fe cloud deck can emerge. The same mechanism could account for color changes at the L/T transition and photometric variability. We present the first observations of spectroscopic variability of brown dwarfs covering the 0.99 μm FeH feature. We observed the spatially resolved very nearby brown dwarf binary WISE J104915.57–531906.1 (Luhman 16AB), a late-L and early-T dwarf, with Hubble Space Telescope/WFC3 in the G102 grism at 0.8–1.15 μm.more » We find significant variability at all wavelengths for both brown dwarfs, with peak-to-valley amplitudes of 9.3% for Luhman 16B and 4.5% for Luhman 16A. This represents the first unambiguous detection of variability in Luhman 16A. We estimate a rotational period between 4.5 and 5.5 hr, very similar to Luhman 16B. Variability in both components complicates the interpretation of spatially unresolved observations. The probability for finding large amplitude variability in any two brown dwarfs is less than 10%. Our finding may suggest that a common but yet unknown feature of the binary is important for the occurrence of variability. For both objects, the amplitude is nearly constant at all wavelengths except in the deep K i feature below 0.84 μm. No variations are seen across the 0.99 μm FeH feature. The observations lend strong further support to cloud height variations rather than holes in the silicate clouds, but cannot fully rule out holes in the iron clouds. We re-evaluate the diagnostic potential of the FeH feature as a tracer of cloud patchiness.« less

Trade cumulus clouds embedded in a deep regional haze: Results from Indian Ocean CARDEX experiment

NASA Astrophysics Data System (ADS)

Wilcox, E. M.; Thomas, R. M.; Praveen, P. S.; Pistone, K.; Bender, F.; Feng, Y.; Ramanathan, V.

2013-12-01

During the winter monsoon, trade cumulus clouds over the North Indian Ocean are embedded within a deep regional haze described as an atmospheric brown cloud. While the trade-cu clouds are largely confined to the marine boundary layer, the sooty brown cloud extends from the boundary layer to as high as 3 km; well above the tops of the cumulus. The boundary layer pollution is persistent and limits drizzle in the cumulus over a period of greater than a month at the Maldives Climate Observatory located at Hanimaadhoo Island. The elevated haze from 1 to 3 km altitude is episodic and strongly modulated by synoptic variability in the 700 hPa flow. The elevated plume enhances heating above the marine boundary layer through daytime absorption of sunlight by the haze particles. The interplay between the microphysical modification of clouds by boundary layer pollution and the episodic elevated heating by the atmospheric brown cloud are explored in in-situ observations from UAVs and surface remote sensing during the CARDEX field campaign of winter 2012 and supported by multi-year analysis of satellite remote sensing observations. These observations document the variability in pollution at the surface and above the marine boundary layer and the effects of pollution on the microphysics of the trade-cu clouds, the depth of the marine boundary layer, the liquid water path of trade-cu clouds, and the profile of turbulent moisture flux through the boundary layer. The consequences of these effects for the radiative forcing of regional climate will be discussed.

ARC-1979-AC79-7081

NASA Image and Video Library

1979-07-08

P-21747 C Range: 2,200,000 miles This image shows a region of the Jovian atmosphere from approximately 25° N to the equatorial region. The north temperate jet, at approximately 23° N, where the wind speed is about 150 meters per second, is seen as a dark brown line from the left-hand edge to the right-hand corner of the picture. The wispy clouds of the north equatorial belt appear as shades of brown. The lower right-hand corner of the image shows the brighter (white) clouds of the equatorial region. A small blue area is apparent near the lower edge, which corresponds to a region free of the upper clouds, where it is possible to penetrate to cloud layers approximately 60 kilometers below the visible surface.

ARC-1979-A79-7081

NASA Image and Video Library

1979-07-08

P-21747 BW Range: 2,200,000 miles This image shows a region of the Jovian atmosphere from approximately 25° N to the equatorial region. The north temperate jet, at approximately 23° N, where the wind speed is about 150 meters per second, is seen as a dark brown line from the left-hand edge to the right-hand corner of the picture. The wispy clouds of the north equatorial belt appear as shades of brown. The lower right-hand corner of the image shows the brighter (white) clouds of the equatorial region. A small blue area is apparent near the lower edge, which corresponds to a region free of the upper clouds, where it is possible to penetrate to cloud layers approximately 60 kilometers below the visible surface.

Brown Carbon Production in Ammonium- or Amine-Containing Aerosol Particles by Reactive Uptake of Methylglyoxal and Photolytic Cloud Cycling.

PubMed

De Haan, David O; Hawkins, Lelia N; Welsh, Hannah G; Pednekar, Raunak; Casar, Jason R; Pennington, Elyse A; de Loera, Alexia; Jimenez, Natalie G; Symons, Michael A; Zauscher, Melanie; Pajunoja, Aki; Caponi, Lorenzo; Cazaunau, Mathieu; Formenti, Paola; Gratien, Aline; Pangui, Edouard; Doussin, Jean-François

2017-07-05

The effects of methylglyoxal uptake on the physical and optical properties of aerosol containing amines or ammonium sulfate were determined before and after cloud processing in a temperature- and RH-controlled chamber. The formation of brown carbon was observed upon methylglyoxal addition, detected as an increase in water-soluble organic carbon mass absorption coefficients below 370 nm and as a drop in single-scattering albedo at 450 nm. The imaginary refractive index component k 450 reached a maximum value of 0.03 ± 0.009 with aqueous glycine aerosol particles. Browning of solid particles occurred at rates limited by chamber mixing (<1 min), and in liquid particles occurred more gradually, but in all cases occurred much more rapidly than in bulk aqueous studies. Further browning in AS and methylammonium sulfate seeds was triggered by cloud events with chamber lights on, suggesting photosensitized brown carbon formation. Despite these changes in optical aerosol characteristics, increases in dried aerosol mass were rarely observed (<1 μg/m 3 in all cases), consistent with previous experiments on methylglyoxal. Under dry, particle-free conditions, methylglyoxal reacted (presumably on chamber walls) with methylamine with a rate constant k = (9 ± 2) × 10 -17 cm 3 molecule -1 s -1 at 294 K and activation energy E a = 64 ± 37 kJ/mol.

ROSAT X-ray detection of a young brown dwarf in the chamaeleon I dark cloud

PubMed

Neuhauser; Comeron

1998-10-02

Photometry and spectroscopy of the object Cha Halpha 1, located in the Chamaeleon I star-forming cloud, show that it is a approximately 10(6)-year-old brown dwarf with spectral type M7.5 to M8 and 0.04 +/- 0.01 solar masses. Quiescent x-ray emission was detected in a 36-kilosecond observation with 31.4 +/- 7.7 x-ray photons, obtained with the Rontgen Satellite (ROSAT), with 9final sigma detection significance. This corresponds to an x-ray luminosity of 2.57 x 10(28) ergs per second and an x-ray to bolometric luminosity ratio of 10(-3.44). These are typical values for late M-type stars. Because the interior of brown dwarfs may be similar to that of convective late-type stars, which are well-known x-ray sources, x-ray emission from brown dwarfs may indicate magnetic activity.

Disease control through fertility control: Secondary benefits of animal birth control in Indian street dogs.

PubMed

Yoak, Andrew J; Reece, John F; Gehrt, Stanley D; Hamilton, Ian M

2014-01-01

We sought to (1) survey sexually intact street dogs for a wide range of diseases in three cities in Rajasthan, India and (2) evaluate links between the health of non-treated dogs and both the presence and duration of animal birth control (ABC) programs. ABC regimes sterilize and vaccinate stray dogs in an attempt to control their population and the spread of rabies. They are commonly suggested to improve the health of those dogs they serve, but here we provide evidence that these benefits also extend to untreated dogs in the community. Viral and bacterial disease seroprevalences were assessed in 240 sexually intact street dogs from Jaipur, Jodhpur, and Sawai Madhopur cities in October and September 2011. Those individuals and 50 additional dogs were assessed for the presence of ticks, fleas, fight wounds, and given body condition scores. Dogs in cities with an ABC program had with significantly (p<0.05) higher overall body condition scores, lower prevalence of open wounds likely caused by fighting, flea infestations, infectious canine hepatitis, Ehrlichia canis, Leptospira interrogans serovars, and canine distemper virus antibodies. However, those same dogs in cities with ABC programs had significantly higher prevalence of Brown Dog Tick (Rhipicephalus sanguineus) infestations. Canine parvovirus and Brucella canis prevalences were not significantly different between cities. This study is the first to demonstrate the health benefits of ABC on non-vaccinated diseases and non-treated individuals. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

Probing Cloud-Driven Variability on Two of the Youngest, Lowest-Mass Brown Dwarfs in the Solar Neighborhood

NASA Astrophysics Data System (ADS)

Schneider, Adam; Cushing, Michael; Kirkpatrick, J. Davy

2016-08-01

Young, late-type brown dwarfs share many properties with directly imaged giant extrasolar planets. They therefore provide unique testbeds for investigating the physical conditions present in this critical temperature and mass regime. WISEA 1147-2040 and 2MASS 1119-1137, two recently discovered late-type (~L7) brown dwarfs, have both been determined to be members of the ~10 Myr old TW Hya Association (Kellogg et al. 2016, Schneider et al. 2016). Each has an estimated mass of 5-6 MJup, making them two of the youngest and lowest-mass free floating objects yet found in the solar neighborhood. As such, these two planetary mass objects provide unparalleled laboratories for investigating giant planet-like atmospheres far from the contaminating starlight of a host sun. Condensate clouds play a critical role in shaping the emergent spectra of both brown dwarfs and gas giant planets, and can cause photometric variability via their non-uniform spatial distribution. We propose to photometrically monitor WISEA 1147-2040 and 2MASS 1119-1137 in order to search for the presence of cloud-driven variability to 1) investigate the potential trend of low surface gravity with high-amplitude variability in a previously unexplored mass regime and 2) explore the angular momentum evolution of isolated planetary mass objects.

Multi-band Emission Light Curves of Jupiter: Insights on Brown Dwarfs and Directly Imaged Exoplanets

NASA Astrophysics Data System (ADS)

Zhang, Xi; Ge, Huazhi; Orton, Glenn S.; Fletcher, Leigh N.; Sinclair, James; Fernandes, Joshua; Momary, Thomas W.; Kasaba, Yasumasa; Sato, Takao M.; Fujiyoshi, Takuya

2016-10-01

Many brown dwarfs exhibit significant infrared flux variability (e.g., Artigau et al. 2009, ApJ, 701, 1534; Radigan et al. 2012, ApJ, 750, 105), ranging from several to twenty percent of the brightness. Current hypotheses include temperature variations, cloud holes and patchiness, and cloud height and thickness variations (e.g., Apai et al. 2013, ApJ, 768, 121; Robinson and Marley 2014, ApJ, 785, 158; Zhang and Showman 2014, ApJ, 788, L6). Some brown dwarfs show phase shifts in the light curves among different wavelengths (e.g., Buenzli et al. 2012, ApJ, 760, L31; Yang et al. 2016, arXiv:1605.02708), indicating vertical variations of the cloud distribution. The current observational technique can barely detect the brightness changes on the surfaces of nearby brown dwarfs (Crossfield et al. 2014, Nature, 505, 654) let alone resolve detailed weather patterns that cause the flux variability. The infrared emission maps of Jupiter might shed light on this problem. Using COMICS at Subaru Telescope, VISIR at Very Large Telescope (VLT) and NASA's Infrared Telescope Facility (IRTF), we obtained infrared images of Jupiter over several nights at multiple wavelengths that are sensitive to several pressure levels from the stratosphere to the deep troposphere below the ammonia clouds. The rotational maps and emission light curves are constructed. The individual pixel brightness varies up to a hundred percent level and the variation of the full-disk brightness is around several percent. Both the shape and amplitude of the light curves are significantly distinct at different wavelengths. Variation of light curves at different epochs and phase shift among different wavelengths are observed. We will present principle component analysis to identify dominant emission features such as stable vortices, cloud holes and eddies in the belts and zones and strong emissions in the aurora region. A radiative transfer model is used to simulate those features to get a more quantitative understanding. This work provides rich insights on the relationship between observed light curves and weather on brown dwarfs and perhaps on directly imaged exoplanets in the future.

The luminosities of the coldest brown dwarfs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tinney, C. G.; Faherty, Jacqueline K.; Kirkpatrick, J. Davy

2014-11-20

In recent years, brown dwarfs have been extended to a new Y-dwarf class with effective temperatures colder than 500 K and masses in the range of 5-30 Jupiter masses. They fill a crucial gap in observable atmospheric properties between the much colder gas-giant planets of our own solar system (at around 130 K) and both hotter T-type brown dwarfs and the hotter planets that can be imaged orbiting young nearby stars (both with effective temperatures in the range of 1500-1000 K). Distance measurements for these objects deliver absolute magnitudes that make critical tests of our understanding of very cool atmospheres.more » Here we report new distances for nine Y dwarfs and seven very late T dwarfs. These reveal that Y dwarfs do indeed represent a continuation of the T-dwarf sequence to both fainter luminosities and cooler temperatures. They also show that the coolest objects display a large range in absolute magnitude for a given photometric color. The latest atmospheric models show good agreement with the majority of these Y-dwarf absolute magnitudes. This is also the case for WISE0855-0714, the coldest and closest brown dwarf to the Sun, which shows evidence for water ice clouds. However, there are also some outstanding exceptions, which suggest either binarity or the presence of condensate clouds. The former is readily testable with current adaptive optics facilities. The latter would mean that the range of cloudiness in Y dwarfs is substantial with most hosting almost no clouds—while others have dense clouds, making them prime targets for future variability observations to study cloud dynamics.« less

Atmospheric circulation of brown dwarfs and directly imaged extrasolar giant planets with active clouds

NASA Astrophysics Data System (ADS)

Tan, Xianyu; Showman, Adam

2016-10-01

Observational evidence have suggested active meteorology in the atmospheres of brown dwarfs (BDs) and directly imaged extrasolar giant planets (EGPs). In particular, a number of surveys for brown dwarfs showed that near-IR brightness variability is common for L and T dwarfs. Directly imaged EGPs share similar observations, and can be viewed as low-gravity versions of BDs. Clouds are believed to play the major role in shaping the thermal structure, dynamics and near-IR flux of these atmospheres. So far, only a few studies have been devoted to atmospheric circulation and the implications for observations of BDs and directly EGPs, and yet no global model includes a self-consistent active cloud formation. Here we present preliminary results from the first global circulation model applied to BDs and directly imaged EGPs that can properly treat absorption and scattering of radiation by cloud particles. Our results suggest that horizontal temperature differences on isobars can reach up to a few hundred Kelvins, with typical horizontal length scale of the temperature and cloud patterns much smaller than the radius of the object. The combination of temperature anomaly and cloud pattern can result in moderate disk-integrated near-IR flux variability. Wind speeds can reach several hundred meters per second in cloud forming layers. Unlike Jupiter and Saturn, we do not observe stable zonal jet/banded patterns in our simulations. Instead, our simulated atmospheres are typically turbulent and dominated by transient vortices. The circulation is sensitive to the parameterized cloud microphysics. Under some parameter combinations, global-scale atmospheric waves can be triggered and maintained. These waves induce global-scale temperature anomalies and cloud patterns, causing large (up to several percent) disk-integrated near-IR flux variability. Our results demonstrate that the commonly observed near-IR brightness variability for BDs and directly imaged EGPs can be explained by the typical cloud-induced turbulent circulation, and in particular, the large flux variability for some objects can be attributed to the global-scale patterns of temperature anomaly and cloud formation caused by atmospheric waves.

Dust in brown dwarfs. III. Formation and structure of quasi-static cloud layers

NASA Astrophysics Data System (ADS)

Woitke, P.; Helling, Ch.

2004-01-01

In this paper, first solutions of the dust moment equations developed in (Woitke & Helling \\cite{wh2003a}) for the description of dust formation and precipitation in brown dwarf and giant gas planet atmospheres are presented. We consider the special case of a static brown dwarf atmosphere, where dust particles continuously nucleate from the gas phase, grow by the accretion of molecules, settle gravitationally and re-evaporate thermally. Mixing by convective overshoot is assumed to replenish the atmosphere with condensable elements, which is necessary to counterbalance the loss of condensable elements by dust formation and gravitational settling (no dust without mixing). Applying a kinetic description of the relevant microphysical and chemical processes for TiO2-grains, the model makes predictions about the large-scale stratification of dust in the atmosphere, the depletion of molecules from the gas phase, the supersaturation of the gas in the atmosphere as well as the mean size and the mass fraction of dust grains as function of depth. Our results suggest that the presence of relevant amounts of dust is restricted to a layer, where the upper boundary (cloud deck) is related to the requirement of a minimum mixing activity (mixing time-scale τmix ≈ 10 6 s) and the lower boundary (cloud base) is determined by the thermodynamical stability of the grains. The nucleation occurs around the cloud deck where the gas is cool, strongly depleted, but nevertheless highly supersaturated (S ≫ 1). These particles settle gravitationally and populate the warmer layers below, where the in situ formation (nucleation) is ineffective or even not possible. During their descent, the particles grow and reach mean radii of ≈30 \\mum ... 400 \\mum at the cloud base, but the majority of the particles in the cloud layer remains much smaller. Finally, the dust grains sink into layers which are sufficiently hot to cause their thermal evaporation. Hence, an effective transport mechanism for condensable elements exists in brown dwarfs, which depletes the gas above and enriches the gas below the cloud base of a considered solid/liquid material. The dust-to-gas mass fraction in the cloud layer results to be approximately given by the mass fraction of condensable elements in the gas being mixed up. Only for artificially reduced mixing we find a self-regulation mechanism that approximately installs phase equilibrium (S ≈ 1) in a limited region around the cloud base.

Brown Carbon Production in Aldehyde + Ammonium Sulfate Mixtures: Effects of Formaldehyde and Amines

NASA Astrophysics Data System (ADS)

Powelson, M.; De Haan, D. O.

2012-12-01

The formation of light-absorbing 'brown carbon,' or HULIS (humic- like substances), in atmospheric aerosol has an important impact on climate. However, the precursors responsible for brown carbon formation have not been identified. Several aldehydes present in clouds (methylglyoxal, glycolaldehyde, hydroxyacetone, glyoxal, and acetaldehyde) have the potential to create brown products when reacted with ammonium sulfate or primary amines such as methylamine or glycine. The formation of light-absorbing products from these reactions was characterized as a function of cloud-relevant pH (from 3- 6) using UV-Visible spectroscopy. Of the different aldehydes teste, the largest production rates of light-absorbing compounds were observed in reactions of glycolaldehyde and methylglyoxal. Primary amines produced more light- absorbing products than ammonium sulfate at lower concentrations. The addition of formaldehyde to any reaction with other aldehydes decreased the formation of light-absorbing products, while the addition of a small amount (1:5 mole ratio) of glycine to aldehyde + ammonium sulfate reactions can increase the production of light-absorbing products. These results suggest that the presence of primary amines significantly influence atmospheric brown carbon production by aldehydes even when much greater quantities of ammonium sulfate are present.

GPI Spectroscopy of the Mass, Age, and Metallicity Benchmark Brown Dwarf HD 4747 B

NASA Astrophysics Data System (ADS)

Crepp, Justin R.; Principe, David A.; Wolff, Schuyler; Giorla Godfrey, Paige A.; Rice, Emily L.; Cieza, Lucas; Pueyo, Laurent; Bechter, Eric B.; Gonzales, Erica J.

2018-02-01

The physical properties of brown dwarf companions found to orbit nearby, solar-type stars can be benchmarked against independent measures of their mass, age, chemical composition, and other parameters, offering insights into the evolution of substellar objects. The TRENDS high-contrast imaging survey has recently discovered a (mass/age/metallicity) benchmark brown dwarf orbiting the nearby (d = 18.69 ± 0.19 pc), G8V/K0V star HD 4747. We have acquired follow-up spectroscopic measurements of HD 4747 B using the Gemini Planet Imager to study its spectral type, effective temperature, surface gravity, and cloud properties. Observations obtained in the H-band and K 1-band recover the companion and reveal that it is near the L/T transition (T1 ± 2). Fitting atmospheric models to the companion spectrum, we find strong evidence for the presence of clouds. However, spectral models cannot satisfactorily fit the complete data set: while the shape of the spectrum can be well-matched in individual filters, a joint fit across the full passband results in discrepancies that are a consequence of the inherent color of the brown dwarf. We also find a 2σ tension in the companion mass, age, and surface gravity when comparing to evolutionary models. These results highlight the importance of using benchmark objects to study “secondary effects” such as metallicity, non-equilibrium chemistry, cloud parameters, electron conduction, non-adiabatic cooling, and other subtleties affecting emergent spectra. As a new L/T transition benchmark, HD 4747 B warrants further investigation into the modeling of cloud physics using higher resolution spectroscopy across a broader range of wavelengths, polarimetric observations, and continued Doppler radial velocity and astrometric monitoring.

Cloud Atlas: Discovery of Rotational Spectral Modulations in a Low-mass, L-type Brown Dwarf Companion to a Star

NASA Astrophysics Data System (ADS)

Manjavacas, Elena; Apai, Dániel; Zhou, Yifan; Karalidi, Theodora; Lew, Ben W. P.; Schneider, Glenn; Cowan, Nicolas; Metchev, Stan; Miles-Páez, Paulo A.; Burgasser, Adam J.; Radigan, Jacqueline; Bedin, Luigi R.; Lowrance, Patrick J.; Marley, Mark S.

2018-01-01

Observations of rotational modulations of brown dwarfs and giant exoplanets allow the characterization of condensate cloud properties. As of now, rotational spectral modulations have only been seen in three L-type brown dwarfs. We report here the discovery of rotational spectral modulations in LP261-75B, an L6-type intermediate surface gravity companion to an M4.5 star. As a part of the Cloud Atlas Treasury program, we acquired time-resolved Wide Field Camera 3 grism spectroscopy (1.1–1.69 μm) of LP261-75B. We find gray spectral variations with the relative amplitude displaying only a weak wavelength dependence and no evidence for lower-amplitude modulations in the 1.4 μm water band than in the adjacent continuum. The likely rotational modulation period is 4.78 ± 0.95 hr, although the rotational phase is not well sampled. The minimum relative amplitude in the white light curve measured over the whole wavelength range is 2.41% ± 0.14%. We report an unusual light curve, which seems to have three peaks approximately evenly distributed in rotational phase. The spectral modulations suggests that the upper atmosphere cloud properties in LP261-75B are similar to two other mid-L dwarfs of typical infrared colors, but differ from that of the extremely red L-dwarf WISE0047.

Atmospheric aerosol brown carbon in the high Himalayas

NASA Astrophysics Data System (ADS)

Kirillova, Elena; Decesari, Stefano; Marinoni, Angela; Bonasoni, Paolo; Vuillermoz, Elisa; Facchini, M. Cristina; Fuzzi, Sandro

2016-04-01

Anthropogenic light-absorbing atmospheric aerosol can reach very high concentrations in the planetary boundary layer in South-East Asia ("brown clouds"), affecting atmospheric transparency and generating spatial gradients of temperature over land with a possible impact on atmospheric dynamics and monsoon circulation. Besides black carbon (BC), an important light-absorbing component of anthropogenic aerosols is the organic carbon component known as 'brown carbon' (BrC). In this research, we provided first measurements of atmospheric aerosol BrC in the high Himalayas during different seasons. Aerosol sampling was conducted at the GAW-WMO Global station "Nepal Climate Observatory-Pyramid" (NCO-P) located in the high Khumbu valley at 5079 m a.s.l. in the foothills of Mt. Everest. PM10 aerosol samples were collected from July 2013 to November 2014. The sampling strategy was set up in order to discriminate the daytime valley breeze bringing polluted air masses up to the observatory and free tropospheric air during nighttime. Water-soluble BrC (WS-BrC) and methanol-soluble BrC (MeS-BrC) were extracted and analyzed using a UV/VIS spectrophotometer equipped with a 50 cm liquid waveguide capillary cell. In the polluted air masses, the highest levels of the BrC light absorption coefficient at 365 nm (babs365) were observed during the pre-monsoon season (1.83±1.46 Mm-1 for WS-BrC and 2.86±2.49 Mm-1 for MeS-BrC) and the lowest during the monsoon season (0.21±0.22 Mm-1 for WS-BrC and 0.32±0.29 Mm-1 for MeS-BrC). The pre-monsoon season is the most frequently influenced by a strong atmospheric brown cloud (ABC) transport to NCO-P due to increased convection and mixing layer height over South Asia combined with the highest up-valley wind speed and the increase of the emissions from open fires due to the agricultural practice along the Himalayas foothills and the Indo-Gangetic Plain. In contrast, the monsoon season is characterized by a weakened valley wind regime and an efficient removal of aerosols by wet scavenging. The wavelength dependence of the light absorption by BrC expressed as Ångström Exponent (AAE) within 330-500 nm was on average lower for MeS-BrC (3.9±1.1) compared to WS-BrC (4.8±0.8) and exhibited no diurnal or seasonal trend. The light absorption coefficient of BrC at 365 nm was about 13-17% (WS-BrC) and about 21-29% (MeS-BrC) of that of BC (AAEBC=1). Relative light absorption of BrC and BC considering the whole solar spectrum showed that at NCO-P WS-BrC absorbs 5±2% and MeS-BrC absorbs 12±7% compared to equivalent BC, as measured by Absorption Photometer (MAAP). These results are in line with previous in situ measurements at low altitude stations in South-East Asia, and do not support the strong enhancements of brown carbon absorption contribution in the upper part of the boundary layer and in the free troposphere suggested by remote sensing observations.

Benchmarking Brown Dwarf Models With a Non-irradiated Transiting Brown Dwarf in Praesepe

NASA Astrophysics Data System (ADS)

Beatty, Thomas; Marley, Mark; Line, Michael; Gizis, John

2018-05-01

We wish to use 9.4 hours of Spitzer time to observe two eclipses, one each at 3.6um and 4.5um, of the transiting brown dwarf AD 3116b. AD 3116b is a 54.2+/-4.3 MJ, 1.08+/-0.07 RJ object on a 1.98 day orbit about a 3200K M-dwarf. Uniquely, AD 3116 and its host star are both members of Praesepe, a 690+/-60 Myr old open cluster. AD 3116b is thus one of two transiting brown dwarfs for which we have a robust isochronal age that is not dependent upon brown dwarf evolutionary models, and the youngest brown dwarf for which this is the case. Importantly, the flux AD 3116b receives from its host star is only 0.7% of its predicted internal luminosity (Saumon & Marley 2008). This makes AD 3116b the first known transiting brown dwarf that simultaneously has a well-defined age, and that receives a negligible amount of external irradiation, and a unique laboratory to test radius and luminosity predictions from brown dwarf evolutionary models. Our goal is to measure the emission from the brown dwarf. AD 3116b should have large, 25 mmag, eclipse depths in the Spitzer bandpasses, and we expect to measure them with a precision of +/-0.50 mmag at 3.6um and +/-0.54 mmag at 4.5um. This will allow us to make measure AD 3116b?s internal effective temperature to +/-40K. We will also use the upcoming Gaia DR2 parallaxes to measure AD 3116b's absolute IRAC magnitudes and color, and hence determine the cloud properties of the atmosphere. As the only known brown dwarf with an independently measured mass, radius, and age, Spitzer measurements of AD 3116b's luminosity and clouds will provide a critical benchmark for brown dwarf observation and theory.

Brown dwarf photospheres are patchy: A Hubble space telescope near-infrared spectroscopic survey finds frequent low-level variability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buenzli, Esther; Apai, Dániel; Radigan, Jacqueline

2014-02-20

Condensate clouds strongly impact the spectra of brown dwarfs and exoplanets. Recent discoveries of variable L/T transition dwarfs argued for patchy clouds in at least some ultracool atmospheres. This study aims to measure the frequency and level of spectral variability in brown dwarfs and to search for correlations with spectral type. We used Hubble Space Telescope/Wide Field Camera 3 to obtain spectroscopic time series for 22 brown dwarfs of spectral types ranging from L5 to T6 at 1.1-1.7 μm for ≈40 minutes per object. Using Bayesian analysis, we find six brown dwarfs with confident (p > 95%) variability in themore » relative flux in at least one wavelength region at sub-percent precision, and five brown dwarfs with tentative (p > 68%) variability. We derive a minimum variability fraction f{sub min}=27{sub −7}{sup +11}% over all covered spectral types. The fraction of variables is equal within errors for mid-L, late-L, and mid-T spectral types; for early-T dwarfs we do not find any confident variable but the sample is too small to derive meaningful limits. For some objects, the variability occurs primarily in the flux peak in the J or H band, others are variable throughout the spectrum or only in specific absorption regions. Four sources may have broadband peak-to-peak amplitudes exceeding 1%. Our measurements are not sensitive to very long periods, inclinations near pole-on and rotationally symmetric heterogeneity. The detection statistics are consistent with most brown dwarf photospheres being patchy. While multiple-percent near-infrared variability may be rare and confined to the L/T transition, low-level heterogeneities are a frequent characteristic of brown dwarf atmospheres.« less

ARC-2006-ACD06-0179-016

NASA Image and Video Library

2006-10-12

Ames holds a Media Day at the Hypervelocity Free Flight facility where Ames is conducting high-speed tests of small models of the agency's new Orion CEV to learn about stability during flight. The hypervelocity test facility uses a gun to shoot Orion models between 0.5 and l.5 inches (1.25 - 3.75 centimeters in diameter. The facility can conduct experiments with speeds up to 19,000 miles per hour (30,400 kilometers per hour) - Wayne Freedman, ABC Channel 7 news inerviews Jeff Brown of Ames

ARC-1989-AC89-0114-324

NASA Image and Video Library

1989-02-28

Arctic Ozone Expedition Stavanger Norway These clouds in the polar regions north of Stravanger, Norway are representative of what are called 'Type 1' and Type 2' polar stratospheric clouds. Type 1 are seen in the lower portion and consist of cloud particles comprised of nitrogen trihydrates. Seen edge-on as in this view, they appear as a thin dark orange or brown layer. Multiple layering can be seen. The Type 2 clouds are above and consist mostly of water molecules frozen as ice. The size of the particles in Type 2 clouds, the water-ice clouds, are much larger than the particle size of the Type 1 clouds - which are on the order of the wavelength of light.

The Young and the Restless: Revealing the Turbulent, Cloudy Nature of Young Brown Dwarfs and Exoplanets

NASA Astrophysics Data System (ADS)

Faherty, Jacqueline; Cruz, Kelle; Rice, Emily; Gagne, Jonathan; Marley, Mark; Gizis, John

2018-05-01

Emerging as an important insight into cool-temperature atmospheric physics is evidence for a correlation between enhanced clouds and youth. With this Spitzer Cycle 14 large GO program, we propose to obtain qualifying evidence for this hypothesis using an age calibrated sample of brown dwarf-exoplanet analogs recently discovered and characterized by team members. Using Spitzer's unparalleled ability to conduct uninterrupted, high-cadence observations over numerous hours, we will examine the periodic brightness variations at 3.5 microns, where clouds are thought to be most disruptive to emergent flux. Compared to older sources, theory predicts that younger or lower-surface gravity objects will have cooler brightness temperatures at 3.5 microns and larger peak to peak amplitude variations due to higher altitude, more turbulent clouds. Therefore we propose to obtain light curves for 26 sources that span L3-L8 spectral types (Teff 2500-1700 K), 20-130 Myr ages, and predicted 8-30 MJup masses. Comparing to the variability trends and statistics of field (3-5 Gyr) Spitzer Space Telescope General Observer Proposal equivalents currently being monitored by Spitzer, we will have unequivocal evidence for (or against) the turbulent atmospheric nature of younger sources. Coupling this Spitzer dataset with the multitude of spectral information we have on each source, the light curves obtained through this proposal will form the definitive library of data for investigating atmosphere dynamics (rotation rates, winds, storms, changing cloud structures) in young giant exoplanets and brown dwarfs.

An L Band Spectrum of the Coldest Brown Dwarf

NASA Astrophysics Data System (ADS)

Morley, Caroline V.; Skemer, Andrew J.; Allers, Katelyn N.; Marley, Mark. S.; Faherty, Jacqueline K.; Visscher, Channon; Beiler, Samuel A.; Miles, Brittany E.; Lupu, Roxana; Freedman, Richard S.; Fortney, Jonathan J.; Geballe, Thomas R.; Bjoraker, Gordon L.

2018-05-01

The coldest brown dwarf, WISE 0855, is the closest known planetary-mass, free-floating object and has a temperature nearly as cold as the solar system gas giants. Like Jupiter, it is predicted to have an atmosphere rich in methane, water, and ammonia, with clouds of volatile ices. WISE 0855 is faint at near-infrared wavelengths and emits almost all its energy in the mid-infrared. Skemer et al. presented a spectrum of WISE 0855 from 4.5–5.1 μm (M band), revealing water vapor features. Here, we present a spectrum of WISE 0855 in the L band, from 3.4–4.14 μm. We present a set of atmosphere models that include a range of compositions (metallicities and C/O ratios) and water ice clouds. Methane absorption is clearly present in the spectrum. The mid-infrared color can be better matched with a methane abundance that is depleted relative to solar abundance. We find that there is evidence for water ice clouds in the M band spectrum, and we find a lack of phosphine spectral features in both the L and M band spectra. We suggest that a deep continuum opacity source may be obscuring the near-infrared flux, possibly a deep phosphorous-bearing cloud, ammonium dihyrogen phosphate. Observations of WISE 0855 provide critical constraints for cold planetary atmospheres, bridging the temperature range between the long-studied solar system planets and accessible exoplanets. The James Webb Space Telescope will soon revolutionize our understanding of cold brown dwarfs with high-precision spectroscopy across the infrared, allowing us to study their compositions and cloud properties, and to infer their atmospheric dynamics and formation processes.

CloudSat Image of Tropical Thunderstorms Over Africa

NASA Technical Reports Server (NTRS)

2006-01-01

[figure removed for brevity, see original site] Figure 1

CloudSat image of a horizontal cross-section of tropical clouds and thunderstorms over east Africa. The red colors are indicative of highly reflective particles such as water (rain) or ice crystals, which the blue indicates thinner clouds (such as cirrus). The flat green/blue lines across the bottom represent the ground signal. The vertical scale on the CloudS at Cloud Profiling Radar image is approximately 30 kilometers (19 miles). The brown line below the image indicates the relative elevation of the land surface. The inset image shows the CloudSat track relative to a Moderate Resolution Imaging Spectroradiometer (MODIS) visible image taken at nearly the same time.

Comparison of Cirrus Cloud Models: A Project of the GEWEX Cloud System Study (GCSS) Working Group on Cirrus Cloud Systems

NASA Technical Reports Server (NTRS)

Starr, David OC.; Benedetti, Angela; Boehm, Matt; Brown, Philip R. A.; Gierens, Klaus M.; Girard, Eric; Giraud, Vincent; Jakob, Christian; Jensen, Eric; Khvorostyanov, Vitaly;

Discovery of a Visual T-dwarf Triple System and Binarity at the L/T Transition

NASA Astrophysics Data System (ADS)

Radigan, Jacqueline; Jayawardhana, Ray; Lafrenière, David; Dupuy, Trent J.; Liu, Michael C.; Scholz, Alexander

2013-11-01

We present new high contrast imaging of eight L/T transition brown dwarfs (BDs) using the NIRC2 camera on the Keck II telescope. One of our targets, the T3.5 dwarf 2MASS J08381155+1511155, was resolved into a hierarchal triple with projected separations of 2.5 ± 0.5 AU and 27 ± 5 AU for the BC and A(BC) components, respectively. Resolved OSIRIS spectroscopy of the A(BC) components confirms that all system members are T dwarfs. The system therefore constitutes the first triple T-dwarf system ever reported. Using resolved photometry to model the integrated-light spectrum, we infer spectral types of T3 ± 1, T3 ± 1, and T4.5 ± 1 for the A, B, and C components, respectively. The uniformly brighter primary has a bluer J - Ks color than the next faintest component, which may reflect a sensitive dependence of the L/T transition temperature on gravity, or alternatively divergent cloud properties among components. Relying on empirical trends and evolutionary models we infer a total system mass of 0.034-0.104 M ⊙ for the BC components at ages of 0.3-3 Gyr, which would imply a period of 12-21 yr assuming the system semimajor axis to be similar to its projection. We also infer differences in effective temperatures and surface gravities between components of no more than ~150 K and ~0.1 dex. Given the similar physical properties of the components, the 2M0838+15 system provides a controlled sample for constraining the relative roles of effective temperature, surface gravity, and dust clouds in the poorly understood L/T transition regime. For an age of 3 Gyr we estimate a binding energy of ~20 × 1041 erg for the wide A(BC) pair, which falls above the empirical minimum found for typical BD binaries, and suggests that the system may have been able to survive a dynamical ejection during formation. Combining our imaging survey results with previous work we find an observed binary fraction of 4/18 or 22_{-8}^{+10}% for unresolved spectral types of L9-T4 at separations >~ 0.''1. This translates into a volume-corrected frequency of 13^{+7}_{-6}%, which is similar to values of ~9%-12% reported outside the transition. Our reported L/T transition binary fraction is roughly twice as large as the binary fraction of an equivalent L9-T4 sample selected from primary rather than unresolved spectral types (6^{+6}_{-4}%); however, this increase is not yet statistically significant and a larger sample is required to settle the issue. The data presented herein were obtained at the W. M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W. M. Keck Foundation.

An Extension of the Split Window Technique for the Retrieval of Precipitable Water: Experimental Verification

DTIC Science & Technology

1988-09-23

DOWNGRADING SCHEDULE D~istribution Unlimited 4. PERFORMING ORGANIZATiON REPORT NUMVBER(S) 5. MONITORiG ORGANIZATION REPORT NUMBER(S) AFGL-TR-88-0237...Collocations were performed on launch sites of the cloud contamination, aerosol problems, collocation 1200 UT radiosondes on 25 Aug 1987. Statistics were...al (1987) and Thomason, 1987). In this imagery opaque clouds to this problem appear white, low clouds and fog appear bright red against a brown

The role of Pleistocene glaciations in shaping the evolution of polar and brown bears. Evidence from a critical review of mitochondrial and nuclear genome analyses.

PubMed

Hassanin, Alexandre

2015-07-01

In this report, I review recent molecular studies dealing with the origin and evolution of polar bears (Ursus maritimus), with special emphasis on their relationships with brown bears (U. arctos). On the basis of mitochondrial and nuclear data, different hypotheses have been proposed, including rapid morphological differentiation of U. maritimus, genetic introgression from U. arctos into U. maritimus, or inversely from U. maritimus into U. arctos, involving either male- or female-mediated gene flow. In the light of available molecular and eco-ethological data, I suggest, firstly, that all divergences among major clades of large bears can be linked to glacial periods, secondly, that polar bears diverged from brown bears before 530 thousand years ago (ka), during one of the three glacial marine isotope stages (MIS) 14, 15.2 or 16, and, thirdly, that genetic introgression had occurred from female polar bears into brown bear populations during at least two glacial periods, at 340 ± 10 ka (MIS 10) in western Europe, and at 155 ± 5 ka (MIS 6) on the ABC islands of southeastern Alaska, and probably also in Beringia and Ireland based on ancient DNA sequences. Copyright © 2015 Académie des sciences. Published by Elsevier SAS. All rights reserved.

NEPTUNE'S DYNAMIC ATMOSPHERE FROM KEPLER K2 OBSERVATIONS: IMPLICATIONS FOR BROWN DWARF LIGHT CURVE ANALYSES.

PubMed

Simon, Amy A; Rowe, Jason F; Gaulme, Patrick; Hammel, Heidi B; Casewell, Sarah L; Fortney, Jonathan J; Gizis, John E; Lissauer, Jack J; Morales-Juberias, Raul; Orton, Glenn S; Wong, Michael H; Marley, Mark S

2016-02-01

Observations of Neptune with the Kepler Space Telescope yield a 49 day light curve with 98% coverage at a 1 minute cadence. A significant signature in the light curve comes from discrete cloud features. We compare results extracted from the light curve data with contemporaneous disk-resolved imaging of Neptune from the Keck 10-m telescope at 1.65 microns and Hubble Space Telescope visible imaging acquired nine months later. This direct comparison validates the feature latitudes assigned to the K2 light curve periods based on Neptune's zonal wind profile, and confirms observed cloud feature variability. Although Neptune's clouds vary in location and intensity on short and long timescales, a single large discrete storm seen in Keck imaging dominates the K2 and Hubble light curves; smaller or fainter clouds likely contribute to short-term brightness variability. The K2 Neptune light curve, in conjunction with our imaging data, provides context for the interpretation of current and future brown dwarf and extrasolar planet variability measurements. In particular we suggest that the balance between large, relatively stable, atmospheric features and smaller, more transient, clouds controls the character of substellar atmospheric variability. Atmospheres dominated by a few large spots may show inherently greater light curve stability than those which exhibit a greater number of smaller features.

Recent Variability Observations of Solar System Giant Planets: Fresh Context for Understanding Exoplanet and Brown Dwarf Weather

NASA Technical Reports Server (NTRS)

Marley, Mark Scott

2016-01-01

Over the past several years a number of high cadence photometric observations of solar system giant planets have been acquired by various platforms. Such observations are of interest as they provide points of comparison to the already expansive set of brown dwarf variability observations and the small, but growing, set of exoplanet variability observations. By measuring how rapidly the integrated light from solar system giant planets can evolve, variability observations of substellar objects that are unlikely to ever be resolved can be placed in a fuller context. Examples of brown dwarf variability observations include extensive work from the ground (e.g., Radigen et al. 2014), Spitzer (e.g., Metchev et al. 2015), Kepler (Gizis et al. 2015), and HST (Yang et al. 2015).Variability has been measured on the planetary mass companion to the brown dwarf 2MASS 1207b (Zhou et al. 2016) and further searches are planned in thermal emission for the known directly imaged planets with ground based telescopes (Apai et al. 2016) and in reflected light with future space based telescopes. Recent solar system variability observations include Kepler monitoring of Neptune (Simon et al. 2016) and Uranus, Spitzer observations of Neptune (Stauffer et al. 2016), and Cassini observations of Jupiter (West et al. in prep). The Cassini observations are of particular interest as they measured the variability of Jupiter at a phase angle of approximately 60 deg, comparable to the viewing geometry expected for space based direct imaging of cool extrasolar Jupiters in reflected light. These solar system analog observations capture many of the characteristics seen in brown dwarf variability, including large amplitudes and rapid light curve evolution on timescales as short as a few rotation periods. Simon et al. (2016) attribute such variations at Neptune to a combination of large scale, stable cloud structures along with smaller, more rapidly varying, cloud patches. The observed brown dwarf and exoplanet variability may well arise from comparable cloud structures. In my presentation I will compare and contrast the nature of the variability observed for the various solar system and other substelar objects and present a wish list for future observations.

Recent Variability Observations of Solar System Giant Planets: Fresh Context for Understanding Exoplanet and Brown Dwarf Weather

NASA Astrophysics Data System (ADS)

Marley, Mark S.; Kepler Giant Planet Variability Team, Spitzer Ice Giant Variability Team

2016-10-01

Over the past several years a number of of high cadence photometric observations of solar system giant planets have been acquired by various platforms. Such observations are of interest as they provide points of comparison to the already expansive set of brown dwarf variability observations and the small, but growing, set of exoplanet variability observations. By measuring how rapidly the integrated light from solar system giant planets can evolve, variability observations of substellar objects that are unlikely to ever be resolved can be placed in a fuller context. Examples of brown dwarf variability observations include extensive work from the ground (e.g., Radigan et al. 2014), Spitzer (e.g., Metchev et al. 2015), Kepler (Gizis et al. 2015), and HST (Yang et al. 2015). Variability has been measured on the planetary mass companion to the brown dwarf 2MASS 1207b (Zhou et al. 2016) and further searches are planned in thermal emission for the known directly imaged planets with ground based telescopes (Apai et al. 2016) and in reflected light with future space based telescopes. Recent solar system variability observations include Kepler monitoring of Neptune (Simon et al. 2016) and Uranus, Spitzer observations of Neptune (Stauffer et al. 2016), and Cassini observations of Jupiter (West et al. in prep). The Cassini observations are of particular interest as they measured the variability of Jupiter at a phase angle of ˜60○, comparable to the viewing geometry expected for space based direct imaging of cool extrasolar Jupiters in reflected light. These solar system analog observations capture many of the characteristics seen in brown dwarf variability, including large amplitudes and rapid light curve evolution on timescales as short as a few rotation periods. Simon et al. (2016) attribute such variations at Neptune to a combination of large scale, stable cloud structures along with smaller, more rapidly varying, cloud patches. The observed brown dwarf and exoplanet variability may well arise from comparable cloud structures. In my presentation I will compare and contrast the nature of the variability observed for the various solar system and other substellar objects and present a wish list for future observations.

The dusty atmosphere of the brown dwarf Gliese 229B.

PubMed

Griffith, C A; Yelle, R V; Marley, M S

1998-12-11

The brown dwarf Gliese 229B has an observable atmosphere too warm to contain ice clouds like those on Jupiter and too cool to contain silicate clouds like those on low-mass stars. These unique conditions permit visibility to higher pressures than possible in cool stars or planets. Gliese 229B's 0.85- to 1.0-micrometer spectrum indicates particulates deep in the atmosphere (10 to 50 bars) having optical properties of neither ice nor silicates. Their reddish color suggests an organic composition characteristic of aerosols in planetary stratospheres. The particles' mass fraction (10(-7)) agrees with a photochemical origin caused by incident radiation from the primary star and suggests the occurrence of processes native to planetary stratospheres.

PHOTOMETRIC MONITORING OF THE COLDEST KNOWN BROWN DWARF WITH THE SPITZER SPACE TELESCOPE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Esplin, T. L.; Luhman, K. L.; Cushing, M. C.

2016-11-20

Because WISE J085510.83-071442.5 (hereafter WISE 0855-0714) is the coldest known brown dwarf (∼250 K) and one of the Sun’s closest neighbors (2.2 pc), it offers a unique opportunity to study a planet-like atmosphere in an unexplored regime of temperature. To detect and characterize inhomogeneities in its atmosphere (e.g., patchy clouds, hot spots), we have performed time-series photometric monitoring of WISE 0855-0714 at 3.6 and 4.5 μ m with the Spitzer Space Telescope during two 23 hr periods that were separated by several months. For both bands, we have detected variability with peak-to-peak amplitudes of 4%–5% and 3%–4% in the firstmore » and second epochs, respectively. The light curves are semiperiodic in the first epoch for both bands, but they are more irregular in the second epoch. Models of patchy clouds have predicted a large increase in mid-infrared (mid-IR) variability amplitudes (for a given cloud covering fraction) with the appearance of water ice clouds at T {sub eff} < 375 K, so if such clouds are responsible for the variability of WISE 0855-0714, then its small amplitudes of variability indicate a very small deviation in cloud coverage between hemispheres. Alternatively, the similarity in mid-IR variability amplitudes between WISE 0855-0714 and somewhat warmer T and Y dwarfs may suggest that they share a common origin for their variability (i.e., not water clouds). In addition to our variability data, we have examined other constraints on the presence of water ice clouds in the atmosphere of WISE 0855-0714, including the recent mid-IR spectrum from Skemer et al. (2016). We find that robust evidence of such clouds is not yet available.« less

Effect of target color and scanning geometry on terrestrial LiDAR point-cloud noise and plane fitting

NASA Astrophysics Data System (ADS)

Bolkas, Dimitrios; Martinez, Aaron

2018-01-01

Point-cloud coordinate information derived from terrestrial Light Detection And Ranging (LiDAR) is important for several applications in surveying and civil engineering. Plane fitting and segmentation of target-surfaces is an important step in several applications such as in the monitoring of structures. Reliable parametric modeling and segmentation relies on the underlying quality of the point-cloud. Therefore, understanding how point-cloud errors affect fitting of planes and segmentation is important. Point-cloud intensity, which accompanies the point-cloud data, often goes hand-in-hand with point-cloud noise. This study uses industrial particle boards painted with eight different colors (black, white, grey, red, green, blue, brown, and yellow) and two different sheens (flat and semi-gloss) to explore how noise and plane residuals vary with scanning geometry (i.e., distance and incidence angle) and target-color. Results show that darker colors, such as black and brown, can produce point clouds that are several times noisier than bright targets, such as white. In addition, semi-gloss targets manage to reduce noise in dark targets by about 2-3 times. The study of plane residuals with scanning geometry reveals that, in many of the cases tested, residuals decrease with increasing incidence angles, which can assist in understanding the distribution of plane residuals in a dataset. Finally, a scheme is developed to derive survey guidelines based on the data collected in this experiment. Three examples demonstrate that users should consider instrument specification, required precision of plane residuals, required point-spacing, target-color, and target-sheen, when selecting scanning locations. Outcomes of this study can aid users to select appropriate instrumentation and improve planning of terrestrial LiDAR data-acquisition.

Top-of-atmosphere radiative forcing affected by brown carbon in the upper troposphere

NASA Astrophysics Data System (ADS)

Zhang, Yuzhong; Forrister, Haviland; Liu, Jiumeng; Dibb, Jack; Anderson, Bruce; Schwarz, Joshua P.; Perring, Anne E.; Jimenez, Jose L.; Campuzano-Jost, Pedro; Wang, Yuhang; Nenes, Athanasios; Weber, Rodney J.

2017-07-01

Carbonaceous aerosols affect the global radiative balance by absorbing and scattering radiation, which leads to warming or cooling of the atmosphere, respectively. Black carbon is the main light-absorbing component. A portion of the organic aerosol known as brown carbon also absorbs light. The climate sensitivity to absorbing aerosols rapidly increases with altitude, but brown carbon measurements are limited in the upper troposphere. Here we present aircraft observations of vertical aerosol distributions over the continental United States in May and June 2012 to show that light-absorbing brown carbon is prevalent in the troposphere, and absorbs more short-wavelength radiation than black carbon at altitudes between 5 and 12 km. We find that brown carbon is transported to these altitudes by deep convection, and that in-cloud heterogeneous processing may produce brown carbon. Radiative transfer calculations suggest that brown carbon accounts for about 24% of combined black and brown carbon warming effect at the tropopause. Roughly two-thirds of the estimated brown carbon forcing occurs above 5 km, although most brown carbon is found below 5 km. The highest radiative absorption occurred during an event that ingested a wildfire plume. We conclude that high-altitude brown carbon from biomass burning is an unappreciated component of climate forcing.

NEPTUNE’S DYNAMIC ATMOSPHERE FROM KEPLER K2 OBSERVATIONS: IMPLICATIONS FOR BROWN DWARF LIGHT CURVE ANALYSES

PubMed Central

Rowe, Jason F.; Gaulme, Patrick; Hammel, Heidi B.; Casewell, Sarah L.; Fortney, Jonathan J.; Gizis, John E.; Lissauer, Jack J.; Morales-Juberias, Raul; Orton, Glenn S.; Wong, Michael H.; Marley, Mark S.

2017-01-01

Observations of Neptune with the Kepler Space Telescope yield a 49 day light curve with 98% coverage at a 1 minute cadence. A significant signature in the light curve comes from discrete cloud features. We compare results extracted from the light curve data with contemporaneous disk-resolved imaging of Neptune from the Keck 10-m telescope at 1.65 microns and Hubble Space Telescope visible imaging acquired nine months later. This direct comparison validates the feature latitudes assigned to the K2 light curve periods based on Neptune’s zonal wind profile, and confirms observed cloud feature variability. Although Neptune’s clouds vary in location and intensity on short and long timescales, a single large discrete storm seen in Keck imaging dominates the K2 and Hubble light curves; smaller or fainter clouds likely contribute to short-term brightness variability. The K2 Neptune light curve, in conjunction with our imaging data, provides context for the interpretation of current and future brown dwarf and extrasolar planet variability measurements. In particular we suggest that the balance between large, relatively stable, atmospheric features and smaller, more transient, clouds controls the character of substellar atmospheric variability. Atmospheres dominated by a few large spots may show inherently greater light curve stability than those which exhibit a greater number of smaller features. PMID:28127087

The Military Applications of Cloud Computing Technologies

DTIC Science & Technology

2013-05-23

tactical networks will potentially cause some unique issues when implementing the JIE. Tactical networks are temporary in nature , and are utilized...connected ABCS clients will receive software updates and security patches as they are published over the network , rather than catching up after an extended...approach from the previous JNN network model, in that it introduces a limited, wireless capability to a unit’s LAN that will enable limited, on-the

Brown and polar bear Y chromosomes reveal extensive male-biased gene flow within brother lineages.

PubMed

Bidon, Tobias; Janke, Axel; Fain, Steven R; Eiken, Hans Geir; Hagen, Snorre B; Saarma, Urmas; Hallström, Björn M; Lecomte, Nicolas; Hailer, Frank

2014-06-01

Brown and polar bears have become prominent examples in phylogeography, but previous phylogeographic studies relied largely on maternally inherited mitochondrial DNA (mtDNA) or were geographically restricted. The male-specific Y chromosome, a natural counterpart to mtDNA, has remained underexplored. Although this paternally inherited chromosome is indispensable for comprehensive analyses of phylogeographic patterns, technical difficulties and low variability have hampered its application in most mammals. We developed 13 novel Y-chromosomal sequence and microsatellite markers from the polar bear genome and screened these in a broad geographic sample of 130 brown and polar bears. We also analyzed a 390-kb-long Y-chromosomal scaffold using sequencing data from published male ursine genomes. Y chromosome evidence support the emerging understanding that brown and polar bears started to diverge no later than the Middle Pleistocene. Contrary to mtDNA patterns, we found 1) brown and polar bears to be reciprocally monophyletic sister (or rather brother) lineages, without signals of introgression, 2) male-biased gene flow across continents and on phylogeographic time scales, and 3) male dispersal that links the Alaskan ABC islands population to mainland brown bears. Due to female philopatry, mtDNA provides a highly structured estimate of population differentiation, while male-biased gene flow is a homogenizing force for nuclear genetic variation. Our findings highlight the importance of analyzing both maternally and paternally inherited loci for a comprehensive view of phylogeographic history, and that mtDNA-based phylogeographic studies of many mammals should be reevaluated. Recent advances in sequencing technology render the analysis of Y-chromosomal variation feasible, even in nonmodel organisms. © The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

CloudSat Image of a Polar Night Storm Near Antarctica

NASA Technical Reports Server (NTRS)

2006-01-01

[figure removed for brevity, see original site] Figure 1

CloudSat image of a horizontal cross-section of a polar night storm near Antarctica. Until now, clouds have been hard to observe in polar regions using remote sensing, particularly during the polar winter or night season. The red colors are indicative of highly reflective particles such as water (rain) or ice crystals, while the blue indicates thinner clouds (such as cirrus). The flat green/blue lines across the bottom represent the ground signal. The vertical scale on the CloudSat Cloud Profiling Radar image is approximately 30 kilometers (19 miles). The blue line below the Cloud Profiling Radar image indicates that the data were taken over water; the brown line below the image indicates the relative elevation of the land surface. The inset image shows the CloudSat track relative to a Moderate Resolution Imaging Spectroradiometer (MODIS) infrared image taken at nearly the same time.

Zones, spots, and planetary-scale waves beating in brown dwarf atmospheres.

PubMed

Apai, D; Karalidi, T; Marley, M S; Yang, H; Flateau, D; Metchev, S; Cowan, N B; Buenzli, E; Burgasser, A J; Radigan, J; Artigau, E; Lowrance, P

2017-08-18

Brown dwarfs are massive analogs of extrasolar giant planets and may host types of atmospheric circulation not seen in the solar system. We analyzed a long-term Spitzer Space Telescope infrared monitoring campaign of brown dwarfs to constrain cloud cover variations over a total of 192 rotations. The infrared brightness evolution is dominated by beat patterns caused by planetary-scale wave pairs and by a small number of bright spots. The beating waves have similar amplitudes but slightly different apparent periods because of differing velocities or directions. The power spectrum of intermediate-temperature brown dwarfs resembles that of Neptune, indicating the presence of zonal temperature and wind speed variations. Our findings explain three previously puzzling behaviors seen in brown dwarf brightness variations. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Examining Cloud, Metallicity, and Gravity signatures in Brown Dwarfs

NASA Astrophysics Data System (ADS)

Gonzales, Eileen; Faherty, Jacqueline K.; Gagné, Jonathan; Artigau, Étienne; BDNYC

2018-01-01

The nearby solar neighborhood is littered with low mass, low temperature objects called brown dwarfs. This population of ultracool objects do not have enough mass to sustain stable hydrogen burning so they never enter the main sequence and simply cool through time. Brown dwarfs span effective temperatures in the range 250 to 3000K. They also have age dependent observable properties. Young brown dwarfs appear to have redder near infrared colors than field age sources, while old objects tend to have bluer colors. Over the past several years, the research group entitled “Brown Dwarfs in New York City” (BDNYC) has been collecting optical, near and mid-infrared spectra, as well as photometry for sources that have well defined distances. In this poster, I will compare the distance calibrated spectral energy distributions of a sample of old, young, and field age brown dwarfs of the same effective temperature. In so doing, I will discern observables linked to gravity, atmosphere, metallicity and age effects.

75 FR 51293 - [Disaster Declaration greek-i12272 and greek-i12273

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-19

... on 08/10/2010, Private Non- Profit organizations that provide essential services of governmental... Counties: Atchison, Brown, Butler, Chase, Clay, Cloud, Comanche, Doniphan, Ellis, Franklin, Greenwood...

Dust in brown dwarfs and extrasolar planets. V. Cloud formation in carbon- and oxygen-rich environments

NASA Astrophysics Data System (ADS)

Helling, Ch.; Tootill, D.; Woitke, P.; Lee, G.

2017-07-01

Context. Recent observations indicate potentially carbon-rich (C/O > 1) exoplanet atmospheres. Spectral fitting methods for brown dwarfs and exoplanets have invoked the C/O ratio as additional parameter but carbon-rich cloud formation modeling is a challenge for the models applied. The determination of the habitable zone for exoplanets requires the treatment of cloud formation in chemically different regimes. Aims: We aim to model cloud formation processes for carbon-rich exoplanetary atmospheres. Disk models show that carbon-rich or near-carbon-rich niches may emerge and cool carbon planets may trace these particular stages of planetary evolution. Methods: We extended our kinetic cloud formation model by including carbon seed formation and the formation of C[s], TiC[s], SiC[s], KCl[s], and MgS[s] by gas-surface reactions. We solved a system of dust moment equations and element conservation for a prescribed Drift-Phoenixatmosphere structure to study how a cloud structure would change with changing initial C/O0 = 0.43...10.0. Results: The seed formation efficiency is lower in carbon-rich atmospheres than in oxygen-rich gases because carbon is a very effective growth species. The consequence is that fewer particles make up a cloud if C/O0 > 1. The cloud particles are smaller in size than in an oxygen-rich atmosphere. An increasing initial C/O ratio does not revert this trend because a much greater abundance of condensible gas species exists in a carbon-rich environment. Cloud particles are generally made of a mix of materials: carbon dominates if C/O0 > 1 and silicates dominate if C/O0 < 1. A carbon content of 80-90% carbon is reached only in extreme cases where C/O0 = 3.0 or 10.0. Conclusions: Carbon-rich atmospheres form clouds that are made of particles of height-dependent mixed compositions, sizes and numbers. The remaining gas phase is far less depleted than in an oxygen-rich atmosphere. Typical tracer molecules are HCN and C2H2 in combination with a featureless, smooth continuum due to a carbonaceous cloud cover, unless the cloud particles become crystalline.

Modeling Optical and Radiative Properties of Clouds Constrained with CARDEX Observations

NASA Astrophysics Data System (ADS)

Mishra, S. K.; Praveen, P. S.; Ramanathan, V.

2013-12-01

Carbonaceous aerosols (CA) have important effects on climate by directly absorbing solar radiation and indirectly changing cloud properties. These particles tend to be a complex mixture of graphitic carbon and organic compounds. The graphitic component, called as elemental carbon (EC), is characterized by significant absorption of solar radiation. Recent studies showed that organic carbon (OC) aerosols absorb strongly near UV region, and this faction is known as Brown Carbon (BrC). The indirect effect of CA can occur in two ways, first by changing the thermal structure of the atmosphere which further affects dynamical processes governing cloud life cycle; secondly, by acting as cloud condensation nuclei (CCN) that can change cloud radiative properties. In this work, cloud optical properties have been numerically estimated by accounting for CAEDEX (Cloud Aerosol Radiative Forcing Dynamics Experiment) observed cloud parameters and the physico-chemical and optical properties of aerosols. The aerosol inclusions in the cloud drop have been considered as core shell structure with core as EC and shell comprising of ammonium sulfate, ammonium nitrate, sea salt and organic carbon (organic acids, OA and brown carbon, BrC). The EC/OC ratio of the inclusion particles have been constrained based on observations. Moderate and heavy pollution events have been decided based on the aerosol number and BC concentration. Cloud drop's co-albedo at 550nm was found nearly identical for pure EC sphere inclusions and core-shell inclusions with all non-absorbing organics in the shell. However, co-albedo was found to increase for the drop having all BrC in the shell. The co-albedo of a cloud drop was found to be the maximum for all aerosol present as interstitial compare to 50% and 0% inclusions existing as interstitial aerosols. The co-albedo was found to be ~ 9.87e-4 for the drop with 100% inclusions existing as interstitial aerosols externally mixed with micron size mineral dust with 2% hematite content. The cloud spectral optical properties and the radiative properties for the aforesaid cases during CARDEX observations will be discussed in detail.

The L dwarf/T dwarf transition: Multiplicity, magnetic activity and mineral meteorology across the hydrogen burning limit

NASA Astrophysics Data System (ADS)

Burgasser, A. J.

2013-02-01

The transition between the L dwarf and T dwarf spectral classes is one of the most remarkable along the stellar/brown dwarf main sequence, separating sources with photospheres containing mineral condensate clouds from those containing methane and ammonia gases. Unusual characteristics of this transition include a 1 μm brightening between late L and early T dwarfs observed in both parallax samples and coeval binaries; a spike in the multiplicity fraction; evidence of increased photometric variability, possibly arising from patchy cloud structures; and a delayed transition for young, planetary-mass objects. All of these features can be explained if this transition is governed by the ``rapid'' (nonequlibrium) rainout of clouds from the photosphere, triggered by temperature, surface gravity, metallicity and (perhaps) rotational effects. While the underlying mechanism of this rainout remains under debate, the transition is now being exploited to discover and precisely characterize tight (<1 AU) very low-mass binaries that can be used to test brown dwarf evolutionary and atmospheric theories, and resolved binaries that further constrain the properties of this remarkable transition.

MBM12: A Close, Younger Version of the TW Hydrae Association

NASA Technical Reports Server (NTRS)

Wolk, S. J.; Hearty, T.; Jayawardhana, R.

2000-01-01

MBM 12 is a dark cloud located about 65 pc from the sun. During the late 1980's and early 1990's, five Classical T Tauri stars were discovered associated with the cloud. The co-existence of the cloud and several stars with disks implies a very young association, very close to the earth. Such an association would be in a league with TWA and Eta Cham. However, at an estimated age of about 1 Myrs. Brown dwarfs/Jupiters would be brighter and disk should be more numerous. Deep ROSAT images and follow up spectroscopic observations raised the cluster membership to 8. We have expanded on this study with deep groundbased imaging, followup spectroscopy and infrared data. We discuss our current data base of U through I observations (complete to V=20) J through K observations (complete to K=14) and spectra of most stars above V magnitude 15. We will present a mass function for the about 40 stars now identified with the association and discuss disk, binary and brown dwarf candidates.

Sonora: A New Generation Model Atmosphere Grid for Brown Dwarfs and Young Extrasolar Giant Planets

NASA Astrophysics Data System (ADS)

Marley, Mark S.; Saumon, Didier; Fortney, Jonathan J.; Morley, Caroline; Lupu, Roxana E.; Freedman, Richard; Visscher, Channon

2017-06-01

Brown dwarf and giant planet atmospheric structure and composition has been studied both by forward models and, increasingly so, by retrieval methods. While indisputably informative, retrieval methods are of greatest value when judged in the context of grid model predictions. Meanwhile retrieval models can test the assumptions inherent in the forward modeling procedure.In order to provide a new, systematic survey of brown dwarf atmospheric structure, emergent spectra, and evolution, we have constructed a new grid of brown dwarf model atmospheres. We ultimately aim for our grid to span substantial ranges of atmospheric metallilcity, C/O ratios, cloud properties, atmospheric mixing, and other parameters. Spectra predicted by our modeling grid can be compared to both observations and retrieval results to aid in the interpretation and planning of future telescopic observations.We thus present Sonora, a new generation of substellar atmosphere models, appropriate for application to studies of L, T, and Y-type brown dwarfs and young extrasolar giant planets. The models describe the expected temperature-pressure profile and emergent spectra of an atmosphere in radiative-convective equilibrium for ranges of effective temperatures and gravities encompassing 200 ≤ Teff ≤ 2400 K and 2.5 ≤ log g ≤ 5.5. In our poster we briefly describe our modeling methodology, enumerate various updates since our group's previous models, and present our initial tranche of models for cloudless, solar metallicity, and solar carbon-to-oxygen ratio, chemical equilibrium atmospheres. These models will be available online and will be updated as opacities and cloud modeling methods continue to improve.

Sunrise, Earth Limb

NASA Technical Reports Server (NTRS)

1992-01-01

This sunrise scene (5.5S, 29.5E) was taken early in the morning, when the sun was still below the horizon and not yet illuminating the dark band of low level clouds on the Earth limb. Ranging from 13 to 18 km. above these low level clouds is a brown layer at the tropopause, an atmospheric temperature inversion which isolates the troposphere from the stratosphere and effectively concentrates particulates from both above and below this level.

Probing gas and dust in the tidal tail of NGC 5221 with the type Ia supernova iPTF16abc

NASA Astrophysics Data System (ADS)

Ferretti, R.; Amanullah, R.; Goobar, A.; Petrushevska, T.; Borthakur, S.; Bulla, M.; Fox, O.; Freeland, E.; Fremling, C.; Hangard, L.; Hayes, M.

2017-10-01

Context. Type Ia supernovae (SNe Ia) can be used to address numerous questions in astrophysics and cosmology. Due to their well known spectral and photometric properties, SNe Ia are well suited to study gas and dust along the lines-of-sight to the explosions. For example, narrow Na I D and Ca II H&K absorption lines can be studied easily, because of the well-defined spectral continuum of SNe Ia around these features. Aims: We aim to study the gas and dust along the line-of-sight to iPTF16abc, which occurred in an unusual location, in a tidal arm, 80 kpc from centre of the galaxy NGC 5221. Methods: Using a time-series of high-resolution spectra, we have examined narrow Na I D and Ca II H&K absorption features for variations in time, which would be indicative for circumstellar (CS) matter. Furthermore, we have taken advantage of the well known photometric properties of SNe Ia to determine reddening due to dust along the line-of-sight. Results: From the lack of variations in Na I D and Ca II H&K, we determine that none of the detected absorption features originate from the CS medium of iPTF16abc. While the Na I D and Ca II H&K absorption is found to be optically thick, a negligible amount of reddening points to a small column of interstellar dust. Conclusions: We find that the gas along the line-of-sight to iPTF16abc is typical of what might be found in the interstellar medium (ISM) within a galaxy. It suggests that we are observing gas that has been tidally stripped during an interaction of NGC 5221 with one of its neighbouring galaxies in the past 109 yr. In the future, the gas clouds could become the locations of star formation. On a longer time scale, the clouds might diffuse, enriching the circum-galactic medium (CGM) with metals. The gas profile along the line-of-sight should be useful for future studies of the dynamics of the galaxy group containing NGC 5221. Based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ESO DDT programme 297.D-5005(A), P. I. Ferretti.

Understanding of variability properties in very low mass stars and brown dwarfs

NASA Astrophysics Data System (ADS)

Mondal, Soumen; Ghosh, Samrat; Khata, Dhrimadri; Joshi, Santosh; Das, Ramkrishna

2018-04-01

We report on photometric variability studies of a L3.5 brown dwarf 2MASS J00361617+1821104 (2M0036+18) in the field and of four young brown dwarfs in the star-forming region IC 348. From muti-epoch observations, we found significant periodic variability in 2M0036+18 with a period of 2.66 ± 0.55 hours on one occasion while it seemed to be non-variable on three other occasions. An evolving dust cloud might cause such a scenario. Among four young brown dwarfs of IC 348 in the spectral range M7.25 - M8, one brown dwarf 2MASS J03443921+3208138 shows significant variability. The K-band spectra (2.0-2.4 μm) of nine very low mass stars (M1 - M9 V) are used to characterize the water band index (H20-K2). We found that it is strongly correlated with the surface temperature of M dwarfs.

Sonora: A New Generation Model Atmosphere Grid for Brown Dwarfs and Young Extrasolar Giant Planets

NASA Technical Reports Server (NTRS)

Marley, Mark S.; Saumon, Didier; Fortney, Jonathan J.; Morley, Caroline; Lupu, Roxana Elena; Freedman, Richard; Visscher, Channon

2017-01-01

Brown dwarf and giant planet atmospheric structure and composition has been studied both by forward models and, increasingly so, by retrieval methods. While indisputably informative, retrieval methods are of greatest value when judged in the context of grid model predictions. Meanwhile retrieval models can test the assumptions inherent in the forward modeling procedure. In order to provide a new, systematic survey of brown dwarf atmospheric structure, emergent spectra, and evolution, we have constructed a new grid of brown dwarf model atmospheres. We ultimately aim for our grid to span substantial ranges of atmospheric metallilcity, C/O ratios, cloud properties, atmospheric mixing, and other parameters. Spectra predicted by our modeling grid can be compared to both observations and retrieval results to aid in the interpretation and planning of future telescopic observations. We thus present Sonora, a new generation of substellar atmosphere models, appropriate for application to studies of L, T, and Y-type brown dwarfs and young extrasolar giant planets. The models describe the expected temperature-pressure profile and emergent spectra of an atmosphere in radiative-convective equilibrium for ranges of effective temperatures and gravities encompassing 200 less than or equal to T(sub eff) less than or equal to 2400 K and 2.5 less than or equal to log g less than or equal to 5.5. In our poster we briefly describe our modeling methodology, enumerate various updates since our group's previous models, and present our initial tranche of models for cloudless, solar metallicity, and solar carbon-to-oxygen ratio, chemical equilibrium atmospheres. These models will be available online and will be updated as opacities and cloud modeling methods continue to improve.

Aerosol-Forming Reactions of Glyoxal, Methylglyoxal and Amino Acids in Clouds

NASA Astrophysics Data System (ADS)

de Haan, D. O.; Smith, K. W.; Stroik, D. R.; Corrigan, A. L.; Lee, F. E.; Phan, J. T.; Conley, A. C.

2008-12-01

Glyoxal and methylglyoxal are two common aldehydes present in fog and cloud water. Amino acids are present in clouds at similar concentrations. Here we present bulk and aerosol mass spectroscopic data demonstrating that irreversible reactions between glyoxal and amino acids, triggered by droplet evaporation, produce N-derivatized imidazole compounds along with deeply colored Maillard reaction products. These reactions can occur in the dark and in the absence of oxidants. Reactions between methylglyoxal and amino acids produce analogous methylated products plus oligomers with masses up to m/z = 1000. These reactions, which go to completion on the 10-min-timescale of cloud processing, could be significant sources of secondary organic aerosol and humic-like substances (HULIS or brown carbon).

Secondary Organic Aerosol and Brown Carbon Formation in the Sunlit Aqueous Phase: Aldehyde Photooxidation in the Presence of Ammonium Salts and Amines

NASA Astrophysics Data System (ADS)

De Haan, D. O.; Galloway, M. M.; Sharp, K. D.; Jiménez, N. G.

2014-12-01

The chemistry of water-soluble carbonyl compounds in clouds is now acknowledged as an important source of secondary organic aerosol. These reactive carbonyl compounds are oxidized to carboxylic acids and form oligomers by radical-radical reactions and by "dark reactions" with ammonium salts (AS) and/or amines. The latter class of reactions also produces light-absorbing brown carbon compounds, especially reactions involving methylglyoxal or glyoxal and amines. However, recent work has found that UV light fades the color of glyoxal + AS and methylgyloxal + AS reaction mixtures. We recently studied aldehyde-AS-amine reactions in sunlight and in control vessels at the same temperature to determine the effects of solar radiation on the aqueous-phase production of brown carbon. In sunlight, methylglyoxal reaction mixtures lost their initial color and failed to brown, indicating the photolytic loss of reactants and/or pre-brown intermediates. In many other reactions, brown products are lost to photolysis, reducing the overall browning of solutions exposed to sunlight. In other experiments, hydrogen peroxide was added to generate OH radicals by photolysis. In the presence of OH radicals, some carbonyl compound mixtures (e.g. those containing hydroxyacetone or glycolaldehyde) browned more rapidly when exposed to sunlight. This indicates the existence of uncharacterized photooxidative browning pathways involving aqueous-phase OH radicals, carbonyls, ammonium salts, and/or amine compounds.

Cloudless Atmospheres for Young Low-Gravity Substellar Objects

NASA Technical Reports Server (NTRS)

Tremblin, P.; Chabrier, G.; Baraffe, I.; Liu, Michael C.; Magnier, E. A.; Lagage, P.-O.; De Oliveira, C. Alves; Burgasser, A. J.; Amundsen, D. S.; Drummond, B.

2017-01-01

Atmospheric modeling of low-gravity (VL-G) young brown dwarfs remains challenging. The presence of very thick clouds is a possible source of this challenge, because of their extremely red near-infrared (NIR) spectra, but no cloud models provide a good fit to the data with a radius compatible with the evolutionary models for these objects. We show that cloudless atmospheres assuming a temperature gradient reduction caused by fingering convection provide a very good model to match the observed VL-G NIR spectra. The sequence of extremely red colors in the NIR for atmospheres with effective temperatures from approx. 2000 K down to approx. 1200 K is very well reproduced with predicted radii typical of young low-gravity objects. Future observations with NIRSPEC and MIRI on the James Webb Space Telescope (JWST) will provide more constraints in the mid-infrared, helping to confirm or refute whether or not the NIR reddening is caused by fingering convection. We suggest that the presence or absence of clouds will be directly determined by the silicate absorption features that can be observed with MIRI. JWST will therefore be able to better characterize the atmosphere of these hot young brown dwarfs and their low-gravity exoplanet analogs.

A cloud-based car parking middleware for IoT-based smart cities: design and implementation.

PubMed

Ji, Zhanlin; Ganchev, Ivan; O'Droma, Máirtín; Zhao, Li; Zhang, Xueji

2014-11-25

This paper presents the generic concept of using cloud-based intelligent car parking services in smart cities as an important application of the Internet of Things (IoT) paradigm. This type of services will become an integral part of a generic IoT operational platform for smart cities due to its pure business-oriented features. A high-level view of the proposed middleware is outlined and the corresponding operational platform is illustrated. To demonstrate the provision of car parking services, based on the proposed middleware, a cloud-based intelligent car parking system for use within a university campus is described along with details of its design, implementation, and operation. A number of software solutions, including Kafka/Storm/Hbase clusters, OSGi web applications with distributed NoSQL, a rule engine, and mobile applications, are proposed to provide 'best' car parking service experience to mobile users, following the Always Best Connected and best Served (ABC&S) paradigm.

Dust in brown dwarfs and extra-solar planets. I. Chemical composition and spectral appearance of quasi-static cloud layers

NASA Astrophysics Data System (ADS)

Helling, Ch.; Woitke, P.; Thi, W.-F.

2008-07-01

Aims: Brown dwarfs are covered by dust cloud layers which cause inhomogeneous surface features and move below the observable τ = 1 level during the object's evolution. The cloud layers have a strong influence on the structure and spectral appearance of brown dwarfs and extra-solar planets, e.g. by providing high local opacities and by removing condensable elements from the atmosphere causing a sub-solar metalicity in the atmosphere. We aim at understanding the formation of cloud layers in quasi-static substellar atmospheres that consist of dirty grains composed of numerous small islands of different solid condensates. Methods: The time-dependent description is a kinetic model describing nucleation, growth and evaporation. It is extended to treat gravitational settling and is applied to the static-stationary case of substellar model atmospheres. From the solution of the dust moments, we determine the grain size distribution function approximately which, together with the calculated material volume fractions, provides the basis for applying effective medium theory and Mie theory to calculate the opacities of the composite dust grains. Results: The cloud particles in brown dwarfs and hot giant-gas planets are found to be small in the high atmospheric layers (a ≈ 0.01 μm), and are composed of a rich mixture of all considered condensates, in particular MgSiO3[s], Mg2SiO4[s] and SiO2[s]. As the particles settle downward, they increase in size and reach several 100 μm in the deepest layers. The more volatile parts of the grains evaporate and the particles stepwise purify to form composite particles of high-temperature condensates in the deeper layers, mainly made of Fe[s] and Al2O3[s]. The gas phase abundances of the elements involved in the dust formation process vary by orders of magnitudes throughout the atmosphere. The grain size distribution is found to be relatively broad in the upper atmospheric layers but strongly peaked in the deeper layers. This reflects the cessation of the nucleation process at intermediate heights. The spectral appearance of the cloud layers in the mid IR (7-20 μm) is close to a grey body with only weak broad features of a few percent, mainly caused by MgSiO3[s], and Mg2SiO4[s]. These features are, nevertheless, a fingerprint of the dust in the higher atmospheric layers that can be probed by observations. Conclusions: Our models predict that the gas phase depletion is much weaker than phase-equilibrium calculations in the high atmospheric layers. Because of the low densities, the dust formation process is incomplete there, which results in considerable amounts of left-over elements that might produce stronger and broader neutral metallic lines.

Overview of VOC emissions and chemistry from PTR-TOF-MS measurements during the SusKat-ABC campaign: high acetaldehyde, ketene, isoprene and isocyanic acid in wintertime air of the Kathmandu Valley

NASA Astrophysics Data System (ADS)

Sarkar, C.; Sinha, V.; Kumar, V.; Rupakheti, M.; Panday, A. K.; Mahata, K.; Rupakheti, D.; Kathayat, B.; Lawrence, M. G.

2015-12-01

During SusKat-ABC (Sustainable Atmosphere for the Kathmandu Valley-Atmospheric Brown Clouds) field campaign conducted in the winter of 2012-2013, a comprehensive study was carried out to characterize the chemical composition of ambient Kathmandu air for speciated VOCs by deploying a Proton Transfer Reaction Time of Flight Mass Spectrometer (PTR-TOF-MS), the first time to be deployed in South Asia. Due to its high mass resolution (m/Δm > 4200) and temporal resolution (1 minute), 71 ion peaks were detected in the PTR-TOF-MS mass scan data, highlighting the chemical complexity of ambient air in the Valley. Of the 71, 38 species were found to have campaign average concentrations > 200 ppt and were identified based on their spectral characteristics, ambient diel profiles and correlation with specific emission tracers. Distinct diel profiles were observed for the nominal isobaric compounds isoprene (m/z=69.070) and furan (m/z=69.033). Comparison with several sites elsewhere in the world showed mixing ratios of acetaldehyde (~ 9 ppb), acetonitrile (~1 ppb) and isoprene (~ 1 ppb) to be among the highest measured anywhere in the world. Two "new" ambient compounds namely, methanamide (m/z = 46.029) and acetamide (m/z=60.051) which can photochemically produce isocyanic acid in the atmosphere, are reported in this study alongwith nitromethane (a tracer for diesel exhaust) and ketene (a very reactive compound). Two distinct periods were identified during the campaign based on high daytime biogenic emissions of isoprene even in winter and biomass fired brick kiln emissions of acetonitrile, benzene and isocyanic acid. Biomass burning and biomass fired brick kiln emissions were found to be the dominant source for compounds such as propyne, propene, benzene and propanenitrile which correlated strongly with biomass burning tracer acetonitrile (r2 > 0.7). The calculated total VOC OH reactivity was dominated by acetaldehyde (20.1%), ketene (ethenone) (17.1%), isoprene (16.8 %) and propene (15.6%), while oxygenated VOCs and isoprene collectively contributed to more than 70% of the total ozone production potential. The first ambient measurements from any site in South Asia of compounds with significant health effects such as isocyanic acid, formamide, acetamide, naphthalene and nitromethane are reported in this study.

FIRST OPTICAL AND NEAR-INFRARED POLARIMETRY OF A MOLECULAR CLOUD FORMING A PROTO-BROWN DWARF CANDIDATE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soam, A.; Maheswar, G.; Kwon, Jugmi

2015-04-20

LDN 328 is cited as an example of a fairly isolated clump contracting to form multiple sub-cores, possibly through gravitational fragmentation. In one of these sub-cores, a proto-brown dwarf (L328-IRS) candidate is in the process of formation through the self-gravitating contraction, similar to the formation scenario of a low-mass star. We present results of our optical and near-infrared polarization observations of regions toward LDN 328. This is the first observational attempt to map the magnetic field geometry of a cloud harboring a proto-brown dwarf candidate associated with a sub-parsec-scale molecular outflow. On a parsec scale, the magnetic field is foundmore » to follow the curved structure of the cloud showing a head–tail morphology. The magnetic field is found to be well ordered over a 0.02–0.2 pc scale around L328-IRS. Taking into account the uncertainties in the determination of position angles, the projected angular offset between the magnetic field direction and the outflow axis is found to be in the range of 0°–70°. Considering outflow to be the proxy for the rotation axis, the result obtained in this study implies that the rotation axis in L328 is preferably parallel to the local magnetic field. The magnetic field strength estimated in the close vicinity of L328-IRS is ∼20 μG. Results from the present study suggest that the magnetic field may be playing a vital role even in the cores that are forming sub-stellar sources.« less

Doppler Imaging of Exoplanets and Brown Dwarfs

NASA Astrophysics Data System (ADS)

Crossfield, I.; Biller, B.; Schlieder, J.; Deacon, N.; Bonnefoy, M.; Homeier, D.; Allard, F.; Buenzli, E.; Henning, T.; Brandner, W.; Goldman, Bertr; Kopytova, T.

2014-03-01

Doppler Imaging produces 2D global maps. When applied to cool planets or more massive brown dwarfs, it can map atmospheric features and track global weather patterns. The first substellar map, of the 2pc-distant brown dwarf Luhman 16B (Crossfeld et al. 2014), revealed patchy regions of thin & thick clouds. Here, I investigate the feasibility of future Doppler Imaging of additional objects. Searching the literature, I find that all 3 of P, v sin i, and variability are published for 22 brown dwarfs. At least one datum exists for 333 targets. The sample is very incomplete below ~L5; we need more surveys to find the best targets for Doppler Imaging! I estimate limiting magnitudes for Doppler Imaging with various hi-resolution near-infrared spectrographs. Only a handful of objects - at the M/L and L/T transitions - can be mapped with current tools. Large telescopes such as TMT and GMT will allow Doppler Imaging of many dozens of brown dwarfs and the brightest exoplanets. More targets beyond type L5 likely remain to be found. Future observations will let us probe the global atmospheric dynamics of many diverse objects.

75 FR 51832 - Kansas; Major Disaster and Related Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-23

... determinations. DATES: Effective Date: August 10, 2010. FOR FURTHER INFORMATION CONTACT: Peggy Miller, Recovery... Hazard Mitigation will be limited to 75 percent of the total eligible costs. Further, you are authorized... Atchison, Brown, Butler, Chase, Clay, Cloud, Comanche, Doniphan, Ellis, Franklin, Greenwood, Harvey, Jewell...

Minimizing quality changes of cloudy apple juice: The use of kiwifruit puree and high pressure homogenization.

PubMed

Yi, Junjie; Kebede, Biniam; Kristiani, Kristiani; Grauwet, Tara; Van Loey, Ann; Hendrickx, Marc

2018-05-30

Cloud loss, enzymatic browning, and flavor changes are important quality defects of cloudy fruit juices determining consumer acceptability. The development of clean label options to overcome such quality problems is currently of high interest. Therefore, this study investigated the effect of kiwifruit puree (clean label ingredient) and high pressure homogenization on quality changes of cloudy apple juice using a multivariate approach. The use of kiwifruit puree addition and high pressure homogenization resulted in a juice with improved uniformity and cloud stability by reducing particle size and increasing viscosity and yield stress (p < 0.01). Furthermore, kiwifruit puree addition reduced enzymatic browning (ΔE ∗  < 3), due to the increased ascorbic acid and contributed to a more saturated and bright yellow color, a better taste balance, and a more fruity aroma of juice. This work demonstrates that clean label options to control quality degradation of cloudy fruit juice might offer new opportunities. Copyright © 2018 Elsevier Ltd. All rights reserved.

Earth observations taken during the STS-71 mission

NASA Image and Video Library

1995-06-29

STS071-701-098 (27 June-7 July 1995) --- This wide-angle, west-looking view shows all of California, from the Los Angeles basin (left, at the coast), to the Oregon border (far right). A large cloud mass occupies the Pacific Ocean all the way to the horizon. The effect of interaction between the land and sea can be seen by the cloud patterns at the coast. San Francisco lies in the bay where clouds penetrate inland farthest (right of center). The central valley of California stands out very well as a cigar-shaped feature across the center of view - green in the middle, surrounded by a brown line, with dark green (forests) surrounding that.

Nitrogen-Containing, Light-Absorbing Oligomers Produced in Aerosol Particles Exposed to Methylglyoxal, Photolysis, and Cloud Cycling.

PubMed

De Haan, David O; Tapavicza, Enrico; Riva, Matthieu; Cui, Tianqu; Surratt, Jason D; Smith, Adam C; Jordan, Mary-Caitlin; Nilakantan, Shiva; Almodovar, Marisol; Stewart, Tiffany N; de Loera, Alexia; De Haan, Audrey C; Cazaunau, Mathieu; Gratien, Aline; Pangui, Edouard; Doussin, Jean-François

2018-04-03

Aqueous methylglyoxal chemistry has often been implicated as an important source of oligomers in atmospheric aerosol. Here we report on chemical analysis of brown carbon aerosol particles collected from cloud cycling/photolysis chamber experiments, where gaseous methylglyoxal and methylamine interacted with glycine, ammonium, or methylammonium sulfate seed particles. Eighteen N-containing oligomers were identified in the particulate phase by liquid chromatography/diode array detection/electrospray ionization high-resolution quadrupole time-of-flight mass spectrometry. Chemical formulas were determined and, for 6 major oligomer products, MS 2 fragmentation spectra were used to propose tentative structures and mechanisms. Electronic absorption spectra were calculated for six tentative product structures by an ab initio second order algebraic-diagrammatic-construction/density functional theory approach. For five structures, matching calculated and measured absorption spectra suggest that they are dominant light-absorbing species at their chromatographic retention times. Detected oligomers incorporated methylglyoxal and amines, as expected, but also pyruvic acid, hydroxyacetone, and significant quantities of acetaldehyde. The finding that ∼80% (by mass) of detected oligomers contained acetaldehyde, a methylglyoxal photolysis product, suggests that daytime methylglyoxal oligomer formation is dominated by radical addition mechanisms involving CH 3 CO*. These mechanisms are evidently responsible for enhanced browning observed during photolytic cloud events.

Fire impacts on the cryosphere

NASA Astrophysics Data System (ADS)

Kehrwald, N. M.; Zennaro, P.; Skiles, M.; Barbante, C.

2015-12-01

Continental-scale smog clouds and massive boreal smoke plumes deposit dark particles on glaciers, darkening their surfaces and altering surface albedo. These atmospheric brown clouds are primarily comprised of both fossil fuel and biomass burning combustion products. Here, we examine the biomass burning contribution to aerosols trapped in the cryosphere through investigating the specific molecular marker levoglucosan (1,6-anhydro-β-D-glucopyranose) in ice cores. Levoglucosan is only produced by cellulose combustion, and therefore is an ideal comparison for multi-proxy investigations incorporating other markers with multiple sources. Wildfire combustion products are a major component of dark aerosols deposited on the Greenland ice sheet during the 2012 melt event. Levoglucosan concentrations that demonstrate the biomass burning contribution are similar to black carbon concentrations that record both fossil fuel and biomass burning during this same event. This similarity is especially important as levoglucosan and black carbon trends differ during the industrial era in the NEEM, Greenland ice core, demonstrating different contributions of fossil fuel and biomass burning to the Greenland ice sheet. These differences are also present in the EPICA Dome C Antarctic ice core. Low-latitude ice cores such as Kilimanjaro, Tanzania and Muztag, Tibet demonstrate that climate is still the primary control over fire activity in these regions, even with increased modern biomass burning and the possible impacts of atmospheric brown clouds.

Extrasolar Planets

NASA Astrophysics Data System (ADS)

Deeg, Hans; Belmonte, Juan Antonio; Aparicio, Antonio

2012-03-01

Participants; Preface; Acknowledgements; 1. Extrasolar planet detection methods Laurance R. Doyle; 2. Statistical properties of exoplanets Stéphane Udry; 3. Characterizing extrasolar planets Timothy M. Brown; 4. From clouds to planet systems: formation and evolution of stars and planets Günther Wuchterl; 5. Abundances in stars with extrasolar planetary systems Garik Israelian; 6. Brown dwarfs: the bridge between stars and planets Rafael Rebolo; 7. The perspective: a panorama of the Solar System Agustín Sánchez-Lavega; 8. Habitable planets around the Sun and other stars James F. Kasting; 9. Biomarkers of extrasolar planets and their observability Franck Selsis, Jimmy Paillet and France Allard; Index.

Beyond the T Dwarfs: Theoretical Spectra, Colors, and Detectability of the Coolest Brown Dwarfs

NASA Astrophysics Data System (ADS)

Burrows, Adam; Sudarsky, David; Lunine, Jonathan I.

2003-10-01

We explore the spectral and atmospheric properties of brown dwarfs cooler than the latest known T dwarfs. Our focus is on the yet-to-be-discovered free-floating brown dwarfs in the Teff range from ~800 to ~130 K and with masses from 25 to 1 MJ. This study is in anticipation of the new characterization capabilities enabled by the launch of the Space Infrared Telescope Facility (SIRTF) and the eventual launch of the James Webb Space Telescope (JWST). In addition, it is in support of the continuing ground-based searches for the coolest substellar objects. We provide spectra from ~0.4 to 30 μm, highlight the evolution and mass dependence of the dominant H2O, CH4, and NH3 molecular bands, consider the formation and effects of water ice clouds, and compare our theoretical flux densities with the putative sensitivities of the instruments on board SIRTF and JWST. The latter can be used to determine the detection ranges from space of cool brown dwarfs. In the process, we determine the reversal point of the blueward trend in the near-infrared colors with decreasing Teff (a prominent feature of the hotter T dwarf family), the Teff's at which water and ammonia clouds appear, the strengths of gas-phase ammonia and methane bands, the masses and ages of the objects for which the neutral alkali metal lines (signatures of L and T dwarfs) are muted, and the increasing role as Teff decreases of the mid-infrared fluxes longward of 4 μm. These changes suggest physical reasons to expect the emergence of at least one new stellar class beyond the T dwarfs. Furthermore, studies in the mid-infrared could assume a new, perhaps transformational, importance in the understanding of the coolest brown dwarfs. Our spectral models populate, with cooler brown dwarfs having progressively more planet-like features, the theoretical gap between the known T dwarfs and the known giant planets. Such objects likely inhabit the Galaxy, but their numbers are as yet unknown.

Spatial and temporal distributions of ice nucleating particles during the Atmospheric Radiation Measurement (ARM) Cloud Aerosol Precipitation Experiment (ACAPEX)

NASA Astrophysics Data System (ADS)

Levin, E. J.; DeMott, P. J.; Suski, K. J.; Boose, Y.; Hill, T. C. J.; McCluskey, C. S.; Schill, G. P.; Duncan, D.; Al-Mashat, H.; Prather, K. A.; Sedlacek, A. J., III; Tomlinson, J. M.; Mei, F.; Hubbe, J. M.; Pekour, M. S.; Leung, L. R.; Kreidenweis, S. M.

2016-12-01

California is currently under drought conditions and changes in precipitation due to future climate change scenarios are uncertain. Thus, understanding the controlling factors for precipitation in this region, and having the capability to accurately model these scenarios, is important. A crucial area in understanding precipitation is in the interplay between atmospheric moisture and aerosols. Specifically, ice nucleation in clouds is an important process controlling precipitation formation. A major component of CA's yearly precipitation comes from wintertime atmospheric river (AR) events which were the focus of the 2015 Atmospheric Radiation Measurement (ARM) Cloud Aerosol Precipitation Experiment (ACAPEX) and CalWater 2 campaigns. These two campaigns provided sampling platforms on four aircraft, including the ARM Aerial Facility G-1, as well as the NOAA Ron Brown research vessel and at a ground station at Bodega Bay, CA. Measurements of ice nucleating particles (INPs) were made with the Colorado State University (CSU) Continuous Flow Diffusion Chamber (CFDC) aboard the G-1 and at Bodega Bay, and using aerosol filter collections on these platforms as well as the Ron Brown for post-processing via immersion freezing in the CSU Ice Spectrometer. Aerosol composition was measured aboard the G-1 with the Aerosol Time-of-Flight Mass Spectrometer (ATOFMS). Both the CFDC and ATOFMS sampled off of an isokinetic inlet when flying in clear air and a counter-flow virtual impactor in clouds to capture ice crystal and cloud droplet residuals. In this presentation we present ice nucleating particle concentrations before, during and after an AR event from air, ground and ocean-based measurements. We also examine INP concentration variability in orographic clouds and in clear air at altitude along the Sierra Nevada range, in the marine boundary layer and through the Central Valley, and relate these INP measurements to other aerosol physical and chemical properties.

THE FIRST SPECTRUM OF THE COLDEST BROWN DWARF

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skemer, Andrew J.; Morley, Caroline V.; Fortney, Jonathan J.

2016-08-01

The recently discovered brown dwarf WISE 0855 presents the first opportunity to directly study an object outside the solar system that is nearly as cold as our own gas giant planets. However, the traditional methodology for characterizing brown dwarfs—near-infrared spectroscopy—is not currently feasible, as WISE 0855 is too cold and faint. To characterize this frozen extrasolar world we obtained a 4.5–5.2 μ m spectrum, the same bandpass long used to study Jupiter’s deep thermal emission. Our spectrum reveals the presence of atmospheric water vapor and clouds, with an absorption profile that is strikingly similar to Jupiter’s. The spectrum quality ismore » high enough to allow for the investigation of dynamical and chemical processes that have long been studied in Jupiter’s atmosphere, but now on an extrasolar world.« less

The immersion freezing behavior of ash particles from wood and brown coal burning

NASA Astrophysics Data System (ADS)

Grawe, Sarah; Augustin-Bauditz, Stefanie; Hartmann, Susan; Hellner, Lisa; Pettersson, Jan B. C.; Prager, Andrea; Stratmann, Frank; Wex, Heike

2016-11-01

It is generally known that ash particles from coal combustion can trigger ice nucleation when they interact with water vapor and/or supercooled droplets. However, data on the ice nucleation of ash particles from different sources, including both anthropogenic and natural combustion processes, are still scarce. As fossil energy sources still fuel the largest proportion of electric power production worldwide, and biomass burning contributes significantly to the global aerosol loading, further data are needed to better assess the ice nucleating efficiency of ash particles. In the framework of this study, we found that ash particles from brown coal (i.e., lignite) burning are up to 2 orders of magnitude more ice active in the immersion mode below -32 °C than those from wood burning. Fly ash from a coal-fired power plant was shown to be the most efficient at nucleating ice. Furthermore, the influence of various particle generation methods on the freezing behavior was studied. For instance, particles were generated either by dispersion of dry sample material, or by atomization of ash-water suspensions, and then led into the Leipzig Aerosol Cloud Interaction Simulator (LACIS) where the immersion freezing behavior was examined. Whereas the immersion freezing behavior of ashes from wood burning was not affected by the particle generation method, it depended on the type of particle generation for ash from brown coal. It was also found that the common practice of treating prepared suspensions in an ultrasonic bath to avoid aggregation of particles led to an enhanced ice nucleation activity. The findings of this study suggest (a) that ash from brown coal burning may influence immersion freezing in clouds close to the source and (b) that the freezing behavior of ash particles may be altered by a change in sample preparation and/or particle generation.

HUBBLE SPIES BROWN DWARFS IN NEARBY STELLAR NURSERY

NASA Technical Reports Server (NTRS)

2002-01-01

Probing deep within a neighborhood stellar nursery, NASA's Hubble Space Telescope uncovered a swarm of newborn brown dwarfs. The orbiting observatory's near-infrared camera revealed about 50 of these objects throughout the Orion Nebula's Trapezium cluster [image at right], about 1,500 light-years from Earth. Appearing like glistening precious stones surrounding a setting of sparkling diamonds, more than 300 fledgling stars and brown dwarfs surround the brightest, most massive stars [center of picture] in Hubble's view of the Trapezium cluster's central region. All of the celestial objects in the Trapezium were born together in this hotbed of star formation. The cluster is named for the trapezoidal alignment of those central massive stars. Brown dwarfs are gaseous objects with masses so low that their cores never become hot enough to fuse hydrogen, the thermonuclear fuel stars like the Sun need to shine steadily. Instead, these gaseous objects fade and cool as they grow older. Brown dwarfs around the age of the Sun (5 billion years old) are very cool and dim, and therefore are difficult for telescopes to find. The brown dwarfs discovered in the Trapezium, however, are youngsters (1 million years old). So they're still hot and bright, and easier to see. This finding, along with observations from ground-based telescopes, is further evidence that brown dwarfs, once considered exotic objects, are nearly as abundant as stars. The image and results appear in the Sept. 20 issue of the Astrophysical Journal. The brown dwarfs are too dim to be seen in a visible-light image taken by the Hubble telescope's Wide Field and Planetary Camera 2 [picture at left]. This view also doesn't show the assemblage of infant stars seen in the near-infrared image. That's because the young stars are embedded in dense clouds of dust and gas. The Hubble telescope's near-infrared camera, the Near Infrared Camera and Multi-Object Spectrometer, penetrated those clouds to capture a view of those objects. The brown dwarfs are the faintest objects in the image. Surveying the cluster's central region, the Hubble telescope spied brown dwarfs with masses equaling 10 to 80 Jupiters. Researchers think there may be less massive brown dwarfs that are beyond the limits of Hubble's vision. The near-infrared image was taken Jan. 17, 1998. Two near-infrared filters were used to obtain information on the colors of the stars at two wavelengths (1.1 and 1.6 microns). The Trapezium picture is 1 light-year across. This composite image was made from a 'mosaic' of nine separate, but adjoining images. In this false-color image, blue corresponds to warmer, more massive stars, and red to cooler, less massive stars and brown dwarfs, and stars that are heavily obscured by dust. The visible-light data were taken in 1994 and 1995. Credits for near-infrared image: NASA; K.L. Luhman (Harvard-Smithsonian Center for Astrophysics, Cambridge, Mass.); and G. Schneider, E. Young, G. Rieke, A. Cotera, H. Chen, M. Rieke, R. Thompson (Steward Observatory, University of Arizona, Tucson, Ariz.) Credits for visible-light picture: NASA, C.R. O'Dell and S.K. Wong (Rice University)

Ionization in atmospheres of brown dwarfs and extrasolar planets VI: Properties of large-scale discharge events

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bailey, R. L.; Helling, Ch.; Hodosán, G.

2014-03-20

Mineral clouds in substellar atmospheres play a special role as a catalyst for a variety of charge processes. If clouds are charged, the surrounding environment becomes electrically activated, and ensembles of charged grains are electrically discharging (e.g., by lightning), which significantly influences the local chemistry creating conditions similar to those thought responsible for life in early planetary atmospheres. We note that such lightning discharges contribute also to the ionization state of the atmosphere. We apply scaling laws for electrical discharge processes from laboratory measurements and numerical experiments to DRIFT-PHOENIX model atmosphere results to model the discharge's propagation downward (as lightning)more » and upward (as sprites) through the atmospheric clouds. We evaluate the spatial extent and energetics of lightning discharges. The atmospheric volume affected (e.g., by increase of temperature or electron number) is larger in a brown dwarf atmosphere (10{sup 8}-10{sup 10} m{sup 3}) than in a giant gas planet (10{sup 4}-10{sup 6} m{sup 3}). Our results suggest that the total dissipated energy in one event is <10{sup 12} J for all models of initial solar metallicity. First attempts to show the influence of lightning on the local gas phase indicate an increase of small carbohydrate molecules like CH and CH{sub 2} at the expense of CO and CH{sub 4}. Dust-forming molecules are destroyed and the cloud particle properties are frozen in unless enough time is available for complete evaporation. We summarize instruments potentially suitable to observe lightning on extrasolar objects.« less

Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae

PubMed Central

2014-01-01

Background Brown algae are sessile macro-organisms of great ecological relevance in coastal ecosystems. They evolved independently from land plants and other multicellular lineages, and therefore hold several original ontogenic and metabolic features. Most brown algae grow along the coastal zone where they face frequent environmental changes, including exposure to toxic levels of heavy metals such as copper (Cu). Results We carried out large-scale transcriptomic and metabolomic analyses to decipher the short-term acclimation of the brown algal model E. siliculosus to Cu stress, and compared these data to results known for other abiotic stressors. This comparison demonstrates that Cu induces oxidative stress in E. siliculosus as illustrated by the transcriptomic overlap between Cu and H2O2 treatments. The common response to Cu and H2O2 consisted in the activation of the oxylipin and the repression of inositol signaling pathways, together with the regulation of genes coding for several transcription-associated proteins. Concomitantly, Cu stress specifically activated a set of genes coding for orthologs of ABC transporters, a P1B-type ATPase, ROS detoxification systems such as a vanadium-dependent bromoperoxidase, and induced an increase of free fatty acid contents. Finally we observed, as a common abiotic stress mechanism, the activation of autophagic processes on one hand and the repression of genes involved in nitrogen assimilation on the other hand. Conclusions Comparisons with data from green plants indicate that some processes involved in Cu and oxidative stress response are conserved across these two distant lineages. At the same time the high number of yet uncharacterized brown alga-specific genes induced in response to copper stress underlines the potential to discover new components and molecular interactions unique to these organisms. Of particular interest for future research is the potential cross-talk between reactive oxygen species (ROS)-, myo-inositol-, and oxylipin signaling. PMID:24885189

Impact of the Growing Population and Energy Demand on the Climatic Conditions of the Indo-Gangetic Basin

NASA Astrophysics Data System (ADS)

Singh, R. P.; Prasad, A. K.; Kafatos, M.

2005-12-01

The Indo-Gangetic (IG) basin is one of the largest basins in the world which is densely populated and suffers with dense fog, haze and smog during winter season. About 500 million people live in the IG basin and due to the dense fog, haze and smog day to day life suffers. India is the third largest producer of the coal in the world and a large share is used in power and industrial sector. The coal used in the power plants is of poor quality (mostly E-F grade or lignite) with high ash content (35-50%) and low calorific value. India's energy consumption has increased 208% from 4.16 quadrillion Btu (quads) in 1980 to 12.8 quads in 2001 with a coal share of ~50.9%. Recent studies using satellite (Moderate Resolution Imaging Spectroradiometer (MODIS) and Multiangle Imaging SpectroRadiometer (MISR)) and AERONET measurements show high aerosol optical depth (AOD) representing the intense air pollution over the IG basin that persists throughout the year. Such high concentrations of AOD show spatial and temporal variations which are controlled by the meteorological conditions (wind pattern, relative humidity, air temperature etc.) and topography. The high AOD observed over the IG basin is attributed to the emissions of fossil fuel SO2 and black carbon which has increased about 6 fold since 1930. The high AOD over the IG basin is attributed to the huge emission from the dense network of coal based thermal power plants in the IG basin and its surroundings that may be the probable cause for the atmospheric brown clouds (ABC). The impact of aerosol parameters on the climatic conditions will be discussed.

Greenhouse gas emissions from municipal solid waste management in Vientiane, Lao PDR.

PubMed

Babel, Sandhya; Vilaysouk, Xaysackda

2016-01-01

Municipal solid waste (MSW) is one of the major environmental problems throughout the world including in Lao PDR. In Vientiane, due to the lack of a collection service, open burning and illegal dumping are commonly practised. This study aims to estimate the greenhouse gas (GHG) emission from the current situation of MSW management (MSWM) in Vientiane and proposes an alternative solution to reduce the GHG emission and environmental impacts. The 2006 Intergovernmental Panel on Climate Change (IPCC) Guidelines for National Greenhouse Gas Inventories (IPCC 2006 model) are used for the estimation of GHG emission from landfill and composting. For the estimation of GHG emission from open burning, the Atmospheric Brown Clouds Emission Inventory Manual (ABC EIM) is used. In Vientiane, a total of 232, 505 tonnes year(-1) of MSW was generated in 2011. Waste generation in Vientiane is 0.69 kg per capita per day, and about 31% of the total MSW generated was directly sent to landfill (71,162 tonnes year(-1)). The total potential GHG emission from the baseline scenario in 2011 was 110,182 tonnes year(-1) CO2-eq, which is 0.15 tonne year(-1) CO2-eq per capita. From the three MSWM scenarios proposed, scenario S3, which includes recycling, composting and landfilling, seems to be an effective solution for dealing with MSW in Vientiane with less air pollution, and is environmentally friendly. The total GHG emission in scenario S3 is reduced to 91,920 tonnes year(-1) CO2-eq (47% reduction), compared with the S1 scenario where all uncollected waste is diverted to landfill. © The Author(s) 2015.

Water Clouds in the Atmosphere of a Jupiter-Like Brown Dwarf

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2016-07-01

Lying a mere 7.2 light-years away, WISE 0855 is the nearest known planetary-mass object. This brown dwarf, a failed star just slightly more massive than Jupiter, is also the coldest known compact body outside of our solar system and new observations have now provided us with a first look at its atmosphere.Temperaturepressure profiles of Jupiter, WISE 0855, and what was previously the coldest extrasolar object with a 5-m spectrum, Gl 570D. Thicker lines show the location of each objects 5-m photospheres. WISE 0855s and Jupiters photospheres are near the point where water starts to condense out into clouds (dashed line). [Skemer et al. 2016]Challenging ObservationsWith a chilly temperature of 250 K, the brown dwarf WISE 0855 is the closest thing weve been able to observe to a body resembling Jupiters ~130 K. WISE 0855 therefore presents an intriguing opportunity to directly study the atmosphere of an object whose physical characteristics are similar to our own gas giants.But studying the atmospheric characteristics of such a body is tricky. WISE 0855 is too cold and faint to be able to obtain traditional optical or near-infrared ( 2.5 m) spectroscopy of it. Luckily, like Jupiter, the opacity of its gas allows thermal emission from its deep atmosphere to escape through an atmospheric window around ~5 m.A team of scientists led by Andrew Skemer (UC Santa Cruz) set out to observe WISE 0855 in this window with the Gemini-North telescope and the Gemini Near-Infrared Spectrograph. Though WISE 0855 is five times fainter than the faintest object previously detected with ground-based 5-m spectroscopy, the dry air of Mauna Kea (and a lot of patience!) allowed the team to obtain unprecedented spectra of this object.WISE 0855s spectrum shows absorption features consistent with water vapor, and its best fit by a cloudy brown-dwarf model. [Skemer et al. 2016]Water Clouds FoundExoplanets and brown dwarfs cooler than ~350 K are expected to form water ice clouds in upper atmosphere and these clouds should be thick enough to alter the emergent spectrum that we observe. Does WISE 0855 fit this picture?Yes! By modeling the spectrum of WISE 0855, Skemer and collaborators demonstrate that its completely dominated by water absorption lines. This represents the first evidence of water clouds in a body outside of our solar system.Atmospheric TurbulenceWISE 0855s water absorption profile bears a striking resemblance to Jupiters. Where the spectra differ, however, is in the lower-wavelength end of observations: Jupiter also shows absorption by a molecule called phosphine, whereas WISE 0855 doesnt.Jupiters spectrum is strikingly similar to WISE 0855s from 4.8 to 5.2 m, where both objects are dominated by water absorption. But from 4.5 to 4.8 m, Jupiters spectrum is dominated by phosphine absorption, indicating a turbulent atmosphere, while WISE 0855s is not. [Skemer et al. 2016]Interestingly, if the bodies were both in equilibrium, neither WISE 0855 nor Jupiter should contain detectable phosphine in their photospheres. The reason Jupiter does is because theres a significant amount of turbulent mixing in its atmosphere that dredges up phosphine from the planets hot interior. The fact that WISE 0855 has no sign of phosphine suggests its atmosphere may be much less turbulent than Jupiters.These observations represent an important step as we attempt to understand the atmospheres of extrasolar bodies that are similar to our own gas-giant planets. Observations of other such bodies in the future especially using new technology like the James Webb Space Telescope will allow us to learn more about the dynamical and chemical processes that occur in cold atmospheres.CitationAndrew J. Skemer et al 2016 ApJ 826 L17. doi:10.3847/2041-8205/826/2/L17

Earth Observation

NASA Image and Video Library

2014-08-01

ISS040-E-87351 (1 Aug. 2014) --- This sunset shot, photographed by an Expedition 40 crew member on the International Space Station, shows polar mesospheric clouds only as a thin bright line ? far above the lowest, yellow-brown weather layer of the atmosphere (known as the troposphere) when the space station was flying over southern Ukraine on Aug. 1, 2014.

California Deficit Clouds Picture for K-12 Funding

ERIC Educational Resources Information Center

Cavanagh, Sean

2011-01-01

Not long after he took office in January, California Governor Jerry Brown presented residents of his state with a simple, stark plan for correcting the state's massive budget imbalance. The Democrat called for making deep and painful cuts to programs across government, while sparing schools. To raise revenue, he proposed allowing the public to…

High-Altitude Data Assimilation System Experiments for the Northern Summer Mesosphere Season of 2007

DTIC Science & Technology

2009-01-01

rates ( Eck - ermann et al., 2007) which are important for accurately modeling and assimilating temperature at these altitudes (e.g., Sassi et al., 2005...clouds and mesopause temperatures. Geophysical Research Letters 34, L24808. Webster, S., Brown, A.R., Cameron , D.R., Jones, C.P., 2003. Improvements to the

EXPLORING THE ROLE OF SUB-MICRON-SIZED DUST GRAINS IN THE ATMOSPHERES OF RED L0–L6 DWARFS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hiranaka, Kay; Cruz, Kelle L.; Baldassare, Vivienne F.

We examine the hypothesis that the red near-infrared colors of some L dwarfs could be explained by a “dust haze” of small particles in their upper atmospheres. This dust haze would exist in conjunction with the clouds found in dwarfs with more typical colors. We developed a model that uses Mie theory and the Hansen particle size distributions to reproduce the extinction due to the proposed dust haze. We apply our method to 23 young L dwarfs and 23 red field L dwarfs. We constrain the properties of the dust haze including particle size distribution and column density using Markovmore » Chain Monte Carlo methods. We find that sub-micron-range silicate grains reproduce the observed reddening. Current brown dwarf atmosphere models include large-grain (1–100 μ m) dust clouds but not sub-micron dust grains. Our results provide a strong proof of concept and motivate a combination of large and small dust grains in brown dwarf atmosphere models.« less

Brown Cloud Pollution and Smog Ozone Transport 6,000 km to the Tropical Atlantic: Mechanism and Sensing

NASA Technical Reports Server (NTRS)

Chatfield, Robert B.; Thompson, Anne M.; Guan, Hong; Witte, Jacquelyn C.; Hudson, Robert D.

2004-01-01

We have found repeated illustrations in the maps of Total Tropospheric Ozone (TTO) of apparent transport of ozone from the Indian Ocean to the Equatorial Atlantic Ocean. Most interesting are examples that coincide with the INDOEX observations of late northern winter. Three soundings with the SHADOZ (Southern Hemisphere Additional Ozonesondes) network help confirm and quantify degree of influence of pollution, lightning, and stratospheric sources, suggesting that perhaps 40% of increased Atlantic ozone could be Asian pollution during periods of maximum identified in the TTO maps. This analysis also indicates a mechanism for such extended transport. We outline recurrent periods of apparent ozone transport from Indian to Atlantic Ocean regions outside the late-winter period. Clearly brown-cloud aerosol affects tropospheric ozone, both limiting its chemical production and also potentially obscuring its detection by the TOMS instrument. Introductory statistical studies will be presented, evaluating the role of tropopause meteorology, aerosol, and other factors in the modifying the relationship between true tropospheric ozone measured by SHADOZ and the TTO product, with suggestions for extending the product.

New Evidence for a Substellar Luminosity Problem: Dynamical Mass for the Brown Dwarf Binary Gl 417BC

NASA Astrophysics Data System (ADS)

Dupuy, Trent J.; Liu, Michael C.; Ireland, Michael J.

2014-08-01

We present new evidence for a problem with cooling rates predicted by substellar evolutionary models that implies that model-derived masses in the literature for brown dwarfs and directly imaged planets may be too high. Based on our dynamical mass for Gl 417BC (L4.5+L6) and a gyrochronology system age from its young, solar-type host star, commonly used models predict luminosities 0.2-0.4 dex lower than we observe. This corroborates a similar luminosity-age discrepancy identified in our previous work on the L4+L4 binary HD 130948BC, which coincidentally has nearly identical component masses (≈50-55 M Jup) and age (≈800 Myr) as Gl 417BC. Such a luminosity offset would cause systematic errors of 15%-25% in model-derived masses at this age. After comparing different models, including cloudless models that should not be appropriate for mid-L dwarfs like Gl 417BC and HD 130948BC but actually match their luminosities better, we speculate the observed overluminosity could be caused by opacity holes (i.e., patchy clouds) in these objects. Moreover, from hybrid substellar evolutionary models that account for cloud disappearance, we infer the corresponding phase of overluminosity may extend from a few hundred million years up to a few gigayears and cause masses to be overestimated by up to 25%, even well after clouds disappear from view entirely. Thus, the range of ages and spectral types affected by this potential systematic shift in luminosity evolution would encompass most known directly imaged gas-giants and field brown dwarfs. Data presented herein were obtained at the W. M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W. M. Keck Foundation.

A Combined Subaru/VLT/MMT 1-5 Micrometer Study of Planets Orbiting HR 8799: Implications For Atmospheric Properties, Masses and Formation

NASA Technical Reports Server (NTRS)

Currie, Thayne; Burrows, Adam; Itoh, Yoichi; Matsumura, Soko; Fukagawa, Misato; Apai, Daniel; Madhusudhan, Nikku; Hinz, Philip M.; Rodigas, T. J.; Kasper, Markus;

Using Laboratory Methods to Better Understand Refractory Cloud Formation in Exoplanet Atmospheres

NASA Astrophysics Data System (ADS)

Kohler, E.; Ferguson, F.

2017-12-01

The high number of extrasolar planets found in recent years has brought a new importance to planetary atmospheres. These recently discovered planets show a large diversity in their masses, temperatures, orbital periods, and other properties. With such a diverse mix of planetary parameters, it is safe to assume that the atmospheric properties are just as varied. Recent literature suggests silicates and metals as possible condensates in extrasolar planetary atmospheres as well as the atmospheres of brown dwarfs. While theoretical studies have laid the foundation of cloud formation analysis, their findings still need to be validated via experiments. A verification of the condensation and vaporization predictions of refractory materials needs to be found in order to assist global circulation models in being as accurate as possible. The stability of minerals identified in the literature as potential candidates, will be tested in a thermogravimetric balance. The minerals will be pumped under vacuum for twenty-four hours under room temperature and then heated to a predetermined high temperature, dependent on the expected vaporization temperature of that sample. If there is apparent mass loss, then the temperature will be lowered at preset durations and mass measurements will be taken in similar measured increments. The data will be processed by a computer program in order to calculate the mass loss as a function of temperature. The current cloud formation and global circulation models are very important to the field of planetary science but their accuracy is hindered by the lack of experimental data. The aim of this work is to investigate the mineral stability of potential condensates in an effort to explain the formation of refractory clouds in the atmospheres of extrasolar planets and brown dwarfs.

The Dependence of Cloud-SST Feedback on Circulation Regime and Timescale

NASA Astrophysics Data System (ADS)

Middlemas, E.; Clement, A. C.; Medeiros, B.

2017-12-01

Studies suggest cloud radiative feedback amplifies internal variability of Pacific sea surface temperature (SST) on interannual-and-longer timescales, though only a few modeling studies have tested the quantitative importance of this feedback (Bellomo et al. 2014b, Brown et al. 2016, Radel et al. 2016 Burgman et al. 2017). We prescribe clouds from a previous control run in the radiation module in Community Atmospheric Model (CAM5-slab), a method called "cloud-locking". By comparing this run to a control run, in which cloud radiative forcing can feedback on the climate system, we isolate the effect of cloud radiative forcing on SST variability. Cloud-locking prevents clouds from radiatively interacting with atmospheric circulation, water vapor, and SST, while maintaining a similar mean state to the control. On all timescales, cloud radiative forcing's influence on SST variance is modulated by the circulation regime. Cloud radiative forcing amplifies SST variance in subsiding regimes and dampens SST variance in convecting regimes. In this particular model, a tug of war between latent heat flux and cloud radiative forcing determines the variance of SST, and the winner depends on the timescale. On decadal-and-longer timescales, cloud radiative forcing plays a relatively larger role than on interannual-and-shorter timescales, while latent heat flux plays a smaller role. On longer timescales, the absence of cloud radiative feedback changes SST variance in a zonally asymmetric pattern in the Pacific Ocean that resembles an IPO-like pattern. We also present an analysis of cloud feedback's role on Pacific SST variability among preindustrial control CMIP5 models to test the model robustness of our results. Our results suggest that circulation plays a crucial role in cloud-SST feedbacks across the globe and cloud radiative feedbacks cannot be ignored when studying SST variability on decadal-and-longer timescales.

Sedimentation Efficiency of Condensation Clouds in Substellar Atmospheres

NASA Astrophysics Data System (ADS)

Gao, Peter; Marley, Mark S.; Ackerman, Andrew S.

2018-03-01

Condensation clouds in substellar atmospheres have been widely inferred from spectra and photometric variability. Up until now, their horizontally averaged vertical distribution and mean particle size have been largely characterized using models, one of which is the eddy diffusion–sedimentation model from Ackerman and Marley that relies on a sedimentation efficiency parameter, f sed, to determine the vertical extent of clouds in the atmosphere. However, the physical processes controlling the vertical structure of clouds in substellar atmospheres are not well understood. In this work, we derive trends in f sed across a large range of eddy diffusivities (K zz ), gravities, material properties, and cloud formation pathways by fitting cloud distributions calculated by a more detailed cloud microphysics model. We find that f sed is dependent on K zz , but not gravity, when K zz is held constant. f sed is most sensitive to the nucleation rate of cloud particles, as determined by material properties like surface energy and molecular weight. High surface energy materials form fewer, larger cloud particles, leading to large f sed (>1), and vice versa for materials with low surface energy. For cloud formation via heterogeneous nucleation, f sed is sensitive to the condensation nuclei flux and radius, connecting cloud formation in substellar atmospheres to the objects’ formation environments and other atmospheric aerosols. These insights could lead to improved cloud models that help us better understand substellar atmospheres. For example, we demonstrate that f sed could increase with increasing cloud base depth in an atmosphere, shedding light on the nature of the brown dwarf L/T transition.

Black Bodies in Dance Education: Charting a New Pedagogical Paradigm to Eliminate Gendered and Hypersexualized Assumptions

ERIC Educational Resources Information Center

West, C. S'thembile

2005-01-01

To resist and transform gendered and hypersexualized assumptions and attitudes that cloud interpretations and devalue readings of black and brown bodies, dance educators cannot only facilitate agency for their students, but also help demonstrate an overarching concern for social justice and equality. Dance has the power to transform and redirect…

Not-So-Bright Bulbs

NASA Technical Reports Server (NTRS)

2008-01-01

This artist's concept shows the dimmest star-like bodies currently known -- twin brown dwarfs referred to as 2M 0939. The twins, which are about the same size, are drawn as if they were viewed close to one of the bodies.

Brown dwarfs are neither planets nor stars. They form like stars out of collapsing clouds of gas and dust, but they don't have enough mass to ignite nuclear burning in their cores and become full-blown stars. They are similar to Jupiter in that they are cool balls of gas, but they are warmer and heavier. Astronomers say that the universe is littered with these cosmic misfits, but because they are so dim, they are hard to find.

NASA's Spitzer Space Telescope is fitted with heat-seeking infrared eyes, which allow it to detect the minute glow of cool objects like brown dwarfs. Data from Spitzer and the Anglo-Australian Observatory in Australia together reveal that both of the brown dwarfs making up 2M 0939 share the title of dimmest known brown dwarfs. Their atmospheres are also among the coolest known for any brown dwarf (565 to 635 Kelvin or 560 to 680 degrees Fahrenheit).

The term 'brown dwarf' comes from the fact that these objects cool and change over time, and therefore do not have a definitive color. The 2M 0939 brown dwarfs, if we could see them directly, would have a dark magenta hue due to their cool temperatures and the presence of water, methane and ammonia gases in their atmospheres.

2M 0939's full name is 2MASS J09393548-2448279 after the partly NASA-funded infrared mission, the Two Micron All Sky Survey, or '2MASS,' which first detected the object in 1999.

Effects of Latent Heating on Atmospheres of Brown Dwarfs and Directly Imaged Planets

NASA Astrophysics Data System (ADS)

Tan, Xianyu; Showman, Adam P.

2017-02-01

The growing number of observations of brown dwarfs (BDs) has provided evidence for strong atmospheric circulation on these objects. Directly imaged planets share similar observations and can be viewed as low-gravity versions of BDs. Vigorous condensate cycles of chemical species in their atmospheres are inferred by observations and theoretical studies, and latent heating associated with condensation is expected to be important in shaping atmospheric circulation and influencing cloud patchiness. We present a qualitative description of the mechanisms by which condensational latent heating influences circulation, and then illustrate them using an idealized general circulation model that includes a condensation cycle of silicates with latent heating and molecular weight effect due to the rainout of the condensate. Simulations with conditions appropriate for typical T dwarfs exhibit the development of localized storms and east-west jets. The storms are spatially inhomogeneous, evolving on a timescale of hours to days and extending vertically from the condensation level to the tropopause. The fractional area of the BD covered by active storms is small. Based on a simple analytic model, we quantitatively explain the area fraction of moist plumes and show its dependence on the radiative timescale and convective available potential energy (CAPE). We predict that if latent heating dominates cloud formation processes, the fractional coverage area of clouds decreases as the spectral type goes through the L/T transition from high to lower effective temperature. This is a natural consequence of the variation of the radiative timescale and CAPE with the spectral type.

Discovery of Rotational Modulations in the Planetary-mass Companion 2M1207b: Intermediate Rotation Period and Heterogeneous Clouds in a Low Gravity Atmosphere

NASA Astrophysics Data System (ADS)

Zhou, Yifan; Apai, Dániel; Schneider, Glenn H.; Marley, Mark S.; Showman, Adam P.

2016-02-01

Rotational modulations of brown dwarfs have recently provided powerful constraints on the properties of ultra-cool atmospheres, including longitudinal and vertical cloud structures and cloud evolution. Furthermore, periodic light curves directly probe the rotational periods of ultra-cool objects. We present here, for the first time, time-resolved high-precision photometric measurements of a planetary-mass companion, 2M1207b. We observed the binary system with Hubble Space Telescope/Wide Field Camera 3 in two bands and with two spacecraft roll angles. Using point-spread function-based photometry, we reach a nearly photon-noise limited accuracy for both the primary and the secondary. While the primary is consistent with a flat light curve, the secondary shows modulations that are clearly detected in the combined light curve as well as in different subsets of the data. The amplitudes are 1.36% in the F125W and 0.78% in the F160W filters, respectively. By fitting sine waves to the light curves, we find a consistent period of {10.7}-0.6+1.2 hr and similar phases in both bands. The J- and H-band amplitude ratio of 2M1207b is very similar to a field brown dwarf that has identical spectral type but different J-H color. Importantly, our study also measures, for the first time, the rotation period for a directly imaged extra-solar planetary-mass companion.

Finding the elusive substellar members of young moving groups

NASA Astrophysics Data System (ADS)

Aller, Kimberly Mei

Young moving groups (YMGs) consist of coeval, comoving stars, with ages between 10-100Myrs, that have migrated from their origins after formation. They provide a valuable link between ongoing star formation in molecular clouds (˜1Myr) and old field stars (≥1Gyr). However, previous searches based on optical surveys such as Hipparcos and the Palomar Sky Survey were insensitive to these very faint cool dwarfs. More recent surveys with GALEX have begun to reveal the nearby (<25 pc) low-mass members (≥ 0.1 M solar massses) but the cool, substellar members have remained elusive. We have increased the search volume by a factor of ˜10 using a novel combination of photometry and proper motions from Pan-STARRS, WISE, and 2MASS in order to uncover the missing substellar members down to ≥ 00.1 M solar massses (at 10Myr). We have obtained NIR low-resolution spectroscopy and confirmed the youth of 65 new ultracool dwarf YMG candidates. We also obtained high-resolution NIR spectroscopy to determine radial velocities for our young brown dwarfs. With our RVs and PS1 parallaxes, we have nearly doubled the number of confirmed bona fide substellar YMG members, which are also brown dwarf age benchmarks. Our new young brown dwarfs empirically define the substellar spectral evolution with age and provide us with a snapshot of brown dwarf evolution. Finally, our resulting young brown dwarfs will be valuable targets for future surveys of brown dwarf binarity and young exoplanet characterization.

Observational Signatures of Cloud-Cloud Collision in the Extended Star-forming Region S235

NASA Astrophysics Data System (ADS)

Dewangan, L. K.; Ojha, D. K.

2017-11-01

We present a multi-wavelength data analysis of the extended star-forming region S235 (hereafter E-S235), where two molecular clouds are present. In E-S235, using the 12CO (1-0) and 13CO (1-0) line data, a molecular cloud linked with the site “S235main” is traced in a velocity range [-24, -18] km s-1, while the other one containing the sites S235A, S235B, and S235C (hereafter “S235ABC”) is depicted in a velocity range [-18, -13] km s-1. In the velocity space, these two clouds are separated by ˜4 km s-1, and are interconnected by a lower-intensity intermediate velocity emission, tracing a broad bridge feature. In the velocity channel maps, a possible complementary molecular pair at [-21, -20] km s-1 and [-16, -15] km s-1 is also evident. The sites, “S235ABC,” east 1, and south-west, are spatially seen in the interface of two clouds. Together, these observed features are consistent with the predictions of numerical models of the cloud-cloud collision (CCC) process, favoring the onset of the CCC in E-S235 about 0.5 Myr ago. Deep UKIDSS near-infrared photometric analysis of point-like sources reveals significant clustering of young stellar populations toward the sites located at the junction, and the “S235main.” The sites “S235ABC” harbor young compact H II regions with dynamical ages of ˜0.06-0.22 Myr, and these sites (including south-west and east 1) also contain dust clumps (having M clump ˜ 40 to 635 {M}⊙ ). Our observational findings suggest that the star formation activities (including massive stars) appear to be influenced by the CCC mechanism at the junction.

Estimation of the global climate effect of brown carbon

NASA Astrophysics Data System (ADS)

Zhang, A.; Wang, Y.; Zhang, Y.; Weber, R. J.; Song, Y.

2017-12-01

Carbonaceous aerosols significantly affect global radiative forcing and climate through absorption and scattering of sunlight. Black carbon (BC) and brown carbon (BrC) are light-absorbing carbonaceous aerosols. The global distribution and climate effect of BrC is uncertain. A recent study suggests that BrC absorption is comparable to BC in the upper troposphere over biomass burning region and that the resulting heating tends to stabilize the atmosphere. Yet current climate models do not include proper treatments of BrC. In this study, we derived a BrC global biomass burning emission inventory from Global Fire Emissions Database 4 (GFED4) and developed a BrC module in the Community Atmosphere Model version 5 (CAM5) of Community Earth System Model (CESM) model. The model simulations compared well to BrC observations of the Studies of Emissions, Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC4RS) and Deep Convective Clouds and Chemistry Project (DC-3) campaigns and includes BrC bleaching. Model results suggested that BrC in the upper troposphere due to convective transport is as important an absorber as BC globally. Upper tropospheric BrC radiative forcing is particularly significant over the tropics, affecting the atmosphere stability and Hadley circulation.

All in the Family: What Brown Dwarfs Teach Us About Extrasolar Giant Planets

NASA Technical Reports Server (NTRS)

Marley, M.

2003-01-01

As we await the first direct image of an extrasolar giant planet, we can turn to theory and the experience gained in the campaign to detect and understand brown dwarfs for guidance on what to expect. As with any new arrival to a family, there should be a strong family resemblance (one hopes) along with notable unique features and interesting peculiarities. The 300 or so known L and T dwarfs, combined with our own giant planets, already span much of the effective temperature range within which extrasolar planets will be found. Only objects with thick, easily detectable, water clouds have yet to be seen. Thus we already know much of the family. I will describe what we have learned from studying these objects, focusing on the important roles clouds and atmospheric chemistry play in affecting their atmospheres and emergent spectra. Relying on these findings and theoretical models, I'll sketch out what we can expect from extrasolar giant planets, focusing on easily detectable features. Some wild cards, of course, are to be expected. Photochemical hazes, in particular, may obscure the family traits on the faces of Jupiter's distant cousins and may make one wonder, at least momentarily, about the milkman.

THE INFLUENCE OF NONUNIFORM CLOUD COVER ON TRANSIT TRANSMISSION SPECTRA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Line, Michael R.; Parmentier, Vivien, E-mail: mrline@ucsc.edu

2016-03-20

We model the impact of nonuniform cloud cover on transit transmission spectra. Patchy clouds exist in nearly every solar system atmosphere, brown dwarfs, and transiting exoplanets. Our major findings suggest that fractional cloud coverage can exactly mimic high mean molecular weight atmospheres and vice versa over certain wavelength regions, in particular, over the Hubble Space Telescope (HST) Wide Field Camera 3 (WFC3) bandpass (1.1–1.7 μm). We also find that patchy cloud coverage exhibits a signature that is different from uniform global clouds. Furthermore, we explain analytically why the “patchy cloud-high mean molecular weight” degeneracy exists. We also explore the degeneracy ofmore » nonuniform cloud coverage in atmospheric retrievals on both synthetic and real planets. We find from retrievals on a synthetic solar composition hot Jupiter with patchy clouds and a cloud-free high mean molecular weight warm Neptune that both cloud-free high mean molecular weight atmospheres and partially cloudy atmospheres can explain the data equally well. Another key finding is that the HST WFC3 transit transmission spectra of two well-observed objects, the hot Jupiter HD 189733b and the warm Neptune HAT-P-11b, can be explained well by solar composition atmospheres with patchy clouds without the need to invoke high mean molecular weight or global clouds. The degeneracy between high molecular weight and solar composition partially cloudy atmospheres can be broken by observing the molecular Rayleigh scattering differences between the two. Furthermore, the signature of partially cloudy limbs also appears as a ∼100 ppm residual in the ingress and egress of the transit light curves, provided that the transit timing is known to seconds.« less

Transitions in the Cloud Composition of Hot Jupiters

NASA Astrophysics Data System (ADS)

Parmentier, Vivien; Fortney, Jonathan J.; Showman, Adam P.; Morley, Caroline; Marley, Mark S.

2016-09-01

Over a large range of equilibrium temperatures, clouds shape the transmission spectrum of hot Jupiter atmospheres, yet their composition remains unknown. Recent observations show that the Kepler light curves of some hot Jupiters are asymmetric: for the hottest planets, the light curve peaks before secondary eclipse, whereas for planets cooler than ˜1900 K, it peaks after secondary eclipse. We use the thermal structure from 3D global circulation models to determine the expected cloud distribution and Kepler light curves of hot Jupiters. We demonstrate that the change from an optical light curve dominated by thermal emission to one dominated by scattering (reflection) naturally explains the observed trend from negative to positive offset. For the cool planets the presence of an asymmetry in the Kepler light curve is a telltale sign of the cloud composition, because each cloud species can produce an offset only over a narrow range of effective temperatures. By comparing our models and the observations, we show that the cloud composition of hot Jupiters likely varies with equilibrium temperature. We suggest that a transition occurs between silicate and manganese sulfide clouds at a temperature near 1600 K, analogous to the L/T transition on brown dwarfs. The cold trapping of cloud species below the photosphere naturally produces such a transition and predicts similar transitions for other condensates, including TiO. We predict that most hot Jupiters should have cloudy nightsides, that partial cloudiness should be common at the limb, and that the dayside hot spot should often be cloud-free.

Atmospheres of Brown Dwarfs

NASA Astrophysics Data System (ADS)

Seay, Christopher; Wang, Ruoyan; Fortney, Jonathan

2018-01-01

We construct a grid of brown dwarf model atmospheres spanning a wide range of atmospheric metallicity (0.3x ≤ met ≤ 100x), C/O ratios (0.25x ≤ C/O ≤ 2.5x), and cloud properties, encompassing atmospheres of effective temperatures 200 ≤ Teff ≤ 2400 K and gravities 2.5 ≤ log g ≤ 5.5. We produce the expected temperature-pressure profiles and emergent spectra from an atmosphere in radiative-convective equilibrium. We can then compare our predicted spectra to observations and retrieval results to aid in their predictions and influence future missions and telescopic observations. In our poster we briefly describe our modeling methodology and present our progress on model grid construction, spanning solar and subsolar C/O and metallicity.

Models of very-low-mass stars, brown dwarfs and exoplanets.

PubMed

Allard, F; Homeier, D; Freytag, B

2012-06-13

Within the next few years, GAIA and several instruments aiming to image extrasolar planets will be ready. In parallel, low-mass planets are being sought around red dwarfs, which offer more favourable conditions, for both radial velocity detection and transit studies, than solar-type stars. In this paper, the authors of a model atmosphere code that has allowed the detection of water vapour in the atmosphere of hot Jupiters review recent advances in modelling the stellar to substellar transition. The revised solar oxygen abundances and cloud model allow the photometric and spectroscopic properties of this transition to be reproduced for the first time. Also presented are highlight results of a model atmosphere grid for stars, brown dwarfs and extrasolar planets.

On Beyond Star Trek, the Role of Synthetic Biology in Nasa's Missions

NASA Technical Reports Server (NTRS)

Rothschild, Lynn J.

2016-01-01

The time has come to for NASA to exploit the nascent field of synthetic biology in pursuit of its mission, including aeronautics, earth science, astrobiology and notably, human exploration. Conversely, NASA advances the fundamental technology of synthetic biology as no one else can because of its unique expertise in the origin of life and life in extreme environments, including the potential for alternate life forms. This enables unique, creative "game changing" advances. NASA's requirement for minimizing upmass in flight will also drive the field toward miniaturization and automation. These drivers will greatly increase the utility of synthetic biology solutions for military, health in remote areas and commercial purposes. To this end, we have begun a program at NASA to explore the use of synthetic biology in NASA's missions, particularly space exploration. As part of this program, we began hosting an iGEM team of undergraduates drawn from Brown and Stanford Universities to conduct synthetic biology research at NASA Ames Research Center. The 2011 team (http://2011.igem.org/Team:Brown-Stanford) produced an award-winning project on using synthetic biology as a basis for a human Mars settlement and the 2012 team has expanded the use of synthetic biology to estimate the potential for life in the clouds of other planets (http://2012.igem.org/Team:Stanford-Brown; http://www.calacademy.org/sciencetoday/igem-competition/). More recent projects from the Stanford-Brown team have expanded our ideas of how synthetic biology can aid NASA's missions from "Synthetic BioCommunication" (http://2013.igem.org/Team:Stanford-Brown) to a "Biodegradable UAS (drone)" in collaboration with Spelman College (http://2014.igem.org/Team:StanfordBrownSpelman#SBS%20iGEM) and most recently, "Self-Folding Origami" (http://2015.igem.org/Team:Stanford-Brown), the winner of the 2015 award for Manufacturing.

The short version of the Activities-specific Balance Confidence (ABC) scale: its validity, reliability, and relationship to balance impairment and falls in older adults.

PubMed

Schepens, Stacey; Goldberg, Allon; Wallace, Melissa

2010-01-01

A shortened version of the ABC 16-item scale (ABC-16), the ABC-6, has been proposed as an alternative balance confidence measure. We investigated whether the ABC-6 is a valid and reliable measure of balance confidence and examined its relationship to balance impairment and falls in older adults. Thirty-five community-dwelling older adults completed the ABC-16, including the 6 questions of the ABC-6. They also completed the following clinical balance tests: unipedal stance time (UST), functional reach (FR), Timed Up and Go (TUG), and maximum step length (MSL). Participants reported 12-month falls history. Balance confidence on the ABC-6 was significantly lower than on the ABC-16, however scores were highly correlated. Fallers reported lower balance confidence than non-fallers as measured by the ABC-6 scale, but confidence did not differ between the groups with the ABC-16. The ABC-6 significantly correlated with all balance tests assessed and number of falls. The ABC-16 significantly correlated with all balance tests assessed, but not with number of falls. Test-retest reliability for the ABC-16 and ABC-6 was good to excellent. The ABC-6 is a valid and reliable measure of balance confidence in community-dwelling older adults, and shows stronger relationships to falls than does the ABC-16. The ABC-6 may be a more useful balance confidence assessment tool than the ABC-16. Copyright 2009 Elsevier Ireland Ltd. All rights reserved.

Point Source Polarimetry with the Gemini Planet Imager: Sensitivity Characterization with T5.5 Dwarf Companion HD 19467 B

NASA Technical Reports Server (NTRS)

Jensen-Clem, Rebecca; Millar-Blanchaer, Max; Mawet, Dimitri; Graham, James R.; Wallace, J. Kent; Macintosh, Bruce; Hinkley, Sasha; Wiktorowicz, Sloane J.; Perrin, Marshall D.; Marley, Mark S.;

Point source polarimetry with the Gemini planet imager: Sensitivity characterization with T5.5 dwarf companion HD 19467 B

DOE PAGES

Jensen-Clem, Rebecca; Millar-Blanchaer, Max; Mawet, Dimitri; ...

2016-03-29

Detecting polarized light from self-luminous exoplanets has the potential to provide key information about rotation, surface gravity, cloud grain size, and cloud coverage. While field brown dwarfs with detected polarized emission are common, no exoplanet or substellar companion has yet been detected in polarized light. With the advent of high contrast imaging spectro-polarimeters such as GPI and SPHERE, such a detection may now be possible with careful treatment of instrumental polarization. In this paper, we present 28 minutes of H-band GPI polarimetric observations of the benchmark T5.5 companion HD 19467 B. We detect no polarization signal from the target, and place an upper limit on the degree of linear polarization ofmore » $${p}_{\\mathrm{CL}99.73\\%}\\leqslant 2.4\\%$$. In conclusion, we discuss our results in the context of T dwarf cloud models and photometric variability.« less

Low altitude cloud height and methane humidity retrievals on Titan in the near-IR

NASA Astrophysics Data System (ADS)

Adamkovics, M.; Hayes, A.; Mitchell, J.; De Pater, I.; Young, E.

2013-12-01

The formation of low altitude clouds on Titan, with cloud-top altitudes below ~10km, likely occurs by a fundamentally different mechanism than for the clouds commonly observed to have cloud-tops in the upper troposphere, above ~15km [1]. Near-infrared spectroscopy of clouds has been the method of choice for determining cloud altitudes [2], however, uncertainties in aerosols scattering properties and opacities, together with limitations in laboratory measurements of gas opacities (in particular for methane), lead to uncertainties in how accurately the altitude of low clouds can be retrieved [3]. Here we revisit near-IR spectra obtained with Keck and Cassini using new laboratory methane line data in the HITRAN 2012 database [4] to address the problem of measuring the altitudes of low clouds. We discuss the role of topography in relation to the formation of low clouds and other diagnostics of conditions near the surface, such as the tropospheric methane humidity. We reanalyze measurements the tropospheric humidity variation [5] and describe observational strategies for improved diagnostics of the tropospheric humidity on Titan . Acknowledgements: Funding for this work is provided by the NSF grant AST-1008788 and NASA OPR grant NNX12AM81G. References: [1] Brown, et al. (2009) ApJ, 706, L110-L113. [2] Ádámkovics et al. (2010) Icarus, 208, 868-877. [3] Griffith et al. (2012) Icarus, 218, 975-988. [4] Rothman et al. (2013) AIP Conf. Proc., 1545, 223-231. [5] Penteado & Griffith (2010) Icarus, 206, 345-351.

A mistletoe tale: postglacial invasion of Psittacanthus schiedeanus (Loranthaceae) to Mesoamerican cloud forests revealed by molecular data and species distribution modeling.

PubMed

Ornelas, Juan Francisco; Gándara, Etelvina; Vásquez-Aguilar, Antonio Acini; Ramírez-Barahona, Santiago; Ortiz-Rodriguez, Andrés Ernesto; González, Clementina; Mejía Saules, María Teresa; Ruiz-Sanchez, Eduardo

2016-04-12

Ecological adaptation to host taxa is thought to result in mistletoe speciation via race formation. However, historical and ecological factors could also contribute to explain genetic structuring particularly when mistletoe host races are distributed allopatrically. Using sequence data from nuclear (ITS) and chloroplast (trnL-F) DNA, we investigate the genetic differentiation of 31 Psittacanthus schiedeanus (Loranthaceae) populations across the Mesoamerican species range. We conducted phylogenetic, population and spatial genetic analyses on 274 individuals of P. schiedeanus to gain insight of the evolutionary history of these populations. Species distribution modeling, isolation with migration and Bayesian inference methods were used to infer the evolutionary transition of mistletoe invasion, in which evolutionary scenarios were compared through posterior probabilities. Our analyses revealed shallow levels of population structure with three genetic groups present across the sample area. Nine haplotypes were identified after sequencing the trnL-F intergenic spacer. These haplotypes showed phylogeographic structure, with three groups with restricted gene flow corresponding to the distribution of individuals/populations separated by habitat (cloud forest localities from San Luis Potosí to northwestern Oaxaca and Chiapas, localities with xeric vegetation in central Oaxaca, and localities with tropical deciduous forests in Chiapas), with post-glacial population expansions and potentially corresponding to post-glacial invasion types. Similarly, 44 ITS ribotypes suggest phylogeographic structure, despite the fact that most frequent ribotypes are widespread indicating effective nuclear gene flow via pollen. Gene flow estimates, a significant genetic signal of demographic expansion, and range shifts under past climatic conditions predicted by species distribution modeling suggest post-glacial invasion of P. schiedeanus mistletoes to cloud forests. However, Approximate Bayesian Computation (ABC) analyses strongly supported a scenario of simultaneous divergence among the three groups isolated recently. Our results provide support for the predominant role of isolation and environmental factors in driving genetic differentiation of Mesoamerican parrot-flower mistletoes. The ABC results are consistent with a scenario of post-glacial mistletoe invasion, independent of host identity, and that habitat types recently isolated P. schiedeanus populations, accumulating slight phenotypic differences among genetic groups due to recent migration across habitats. Under this scenario, climatic fluctuations throughout the Pleistocene would have altered the distribution of suitable habitat for mistletoes throughout Mesoamerica leading to variation in population continuity and isolation. Our findings add to an understanding of the role of recent isolation and colonization in shaping cloud forest communities in the region.

Ship-based Observations of Turbulence and Stratocumulus Cloud Microphysics in the SE Pacific Ocean from the VOCALS Field Program

NASA Astrophysics Data System (ADS)

Fairall, C. W.; Williams, C.; Grachev, A. A.; Brewer, A.; Choukulkar, A.

2013-12-01

The VAMOS (VOCALS) field program involved deployment of several measurement systems based on ships, land and aircraft over the SE Pacific Ocean. The NOAA Ship Ronald H. Brown was the primary platform for surface based measurements which included the High Resolution Doppler Lidar (HRDL) and the motion-stabilized 94-GHz cloud Doppler radar (W-band radar). In this paper, the data from the W-band radar will be used to study the turbulent and microphysical structure of the stratocumulus clouds prevalent in the region. The radar data consists of a 3 Hz time series of radar parameters (backscatter coefficient, mean Doppler shift, and Doppler width) at 175 range gates (25-m spacing). Several statistical methods to de-convolve the turbulent velocity and gravitational settling velocity are examined and an optimized algorithm is developed. 20 days of observations are processed to examine in-cloud profiles of mean turbulent statistics (vertical velocity variance, skewness, dissipation rate) in terms of surface fluxes and estimates of entrainment and cloudtop radiative cooling. The clean separation of turbulent and fall velocities will allow us to compute time-averaged drizzle-drop size spectra within and below the cloud that are significantly superior to previous attempts with surface-based marine cloud radar observations.

Human mining activity across the ages determines the genetic structure of modern brown trout (Salmo trutta L.) populations

PubMed Central

Paris, Josephine R; King, R Andrew; Stevens, Jamie R

2015-01-01

Humans have exploited the earth's metal resources for thousands of years leaving behind a legacy of toxic metal contamination and poor water quality. The southwest of England provides a well-defined example, with a rich history of metal mining dating to the Bronze Age. Mine water washout continues to negatively impact water quality across the region where brown trout (Salmo trutta L.) populations exist in both metal-impacted and relatively clean rivers. We used microsatellites to assess the genetic impact of mining practices on trout populations in this region. Our analyses demonstrated that metal-impacted trout populations have low genetic diversity and have experienced severe population declines. Metal-river trout populations are genetically distinct from clean-river populations, and also from one another, despite being geographically proximate. Using approximate Bayesian computation (ABC), we dated the origins of these genetic patterns to periods of intensive mining activity. The historical split of contemporary metal-impacted populations from clean-river fish dated to the Medieval period. Moreover, we observed two distinct genetic populations of trout within a single catchment and dated their divergence to the Industrial Revolution. Our investigation thus provides an evaluation of contemporary population genetics in showing how human-altered landscapes can change the genetic makeup of a species. PMID:26136823

The Y-type Brown Dwarfs: Estimates of Mass and Age from New Astrometry, Homogenized Photometry, and Near-infrared Spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leggett, S. K.; Tremblin, P.; Esplin, T. L.

The survey of the mid-infrared sky by the Wide-field Infrared Survey Explorer ( WISE ) led to the discovery of extremely cold, low-mass brown dwarfs, classified as Y dwarfs, which extend the T class to lower temperatures. Twenty-four Y dwarfs are known at the time of writing. Here we present improved parallaxes for four of these, determined using Spitzer images. We give new photometry for four late-type T and three Y dwarfs and new spectra of three Y dwarfs, obtained at Gemini Observatory. We also present previously unpublished photometry taken from HST , ESO, Spitzer , and WISE archives ofmore » 11 late-type T and 9 Y dwarfs. The near-infrared data are put onto the same photometric system, forming a homogeneous data set for the coolest brown dwarfs. We compare recent models to our photometric and spectroscopic data set. We confirm that nonequilibrium atmospheric chemistry is important for these objects. Nonequilibrium cloud-free models reproduce well the near-infrared spectra and mid-infrared photometry for the warmer Y dwarfs with 425 ≤ T {sub eff} (K) ≤ 450. A small amount of cloud cover may improve the model fits in the near-infrared for the Y dwarfs with 325 ≤ T {sub eff} (K) ≤ 375. Neither cloudy nor cloud-free models reproduce the near-infrared photometry for the T {sub eff} = 250 K Y dwarf W0855. We use the mid-infrared region, where most of the flux originates, to constrain our models of W0855. We find that W0855 likely has a mass of 1.5–8 Jupiter masses and an age of 0.3–6 Gyr. The Y dwarfs with measured parallaxes are within 20 pc of the Sun and have tangential velocities typical of the thin disk. The metallicities and ages we derive for the sample are generally solar-like. We estimate that the known Y dwarfs are 3 to 20 Jupiter-mass objects with ages of 0.6–8.5 Gyr.« less

First Light LBT AO Images of HR 8799 bcde at 1.6 and 3.3 μm: New Discrepancies between Young Planets and Old Brown Dwarfs

NASA Astrophysics Data System (ADS)

Skemer, Andrew J.; Hinz, Philip M.; Esposito, Simone; Burrows, Adam; Leisenring, Jarron; Skrutskie, Michael; Desidera, Silvano; Mesa, Dino; Arcidiacono, Carmelo; Mannucci, Filippo; Rodigas, Timothy J.; Close, Laird; McCarthy, Don; Kulesa, Craig; Agapito, Guido; Apai, Daniel; Argomedo, Javier; Bailey, Vanessa; Boutsia, Konstantina; Briguglio, Runa; Brusa, Guido; Busoni, Lorenzo; Claudi, Riccardo; Eisner, Joshua; Fini, Luca; Follette, Katherine B.; Garnavich, Peter; Gratton, Raffaele; Guerra, Juan Carlos; Hill, John M.; Hoffmann, William F.; Jones, Terry; Krejny, Megan; Males, Jared; Masciadri, Elena; Meyer, Michael R.; Miller, Douglas L.; Morzinski, Katie; Nelson, Matthew; Pinna, Enrico; Puglisi, Alfio; Quanz, Sascha P.; Quiros-Pacheco, Fernando; Riccardi, Armando; Stefanini, Paolo; Vaitheeswaran, Vidhya; Wilson, John C.; Xompero, Marco

2012-07-01

As the only directly imaged multiple planet system, HR 8799 provides a unique opportunity to study the physical properties of several planets in parallel. In this paper, we image all four of the HR 8799 planets at H band and 3.3 μm with the new Large Binocular Telescope adaptive optics system, PISCES, and LBTI/LMIRCam. Our images offer an unprecedented view of the system, allowing us to obtain H and 3.3 μm photometry of the innermost planet (for the first time) and put strong upper limits on the presence of a hypothetical fifth companion. We find that all four planets are unexpectedly bright at 3.3 μm compared to the equilibrium chemistry models used for field brown dwarfs, which predict that planets should be faint at 3.3 μm due to CH4 opacity. We attempt to model the planets with thick-cloudy, non-equilibrium chemistry atmospheres but find that removing CH4 to fit the 3.3 μm photometry increases the predicted L' (3.8 μm) flux enough that it is inconsistent with observations. In an effort to fit the spectral energy distribution of the HR 8799 planets, we construct mixtures of cloudy atmospheres, which are intended to represent planets covered by clouds of varying opacity. In this scenario, regions with low opacity look hot and bright, while regions with high opacity look faint, similar to the patchy cloud structures on Jupiter and L/T transition brown dwarfs. Our mixed-cloud models reproduce all of the available data, but self-consistent models are still necessary to demonstrate their viability. The LBT is an international collaboration among institutions in the United States, Italy, and Germany. LBT Corporation partners are as follows: The University of Arizona on behalf of the Arizona university system; Istituto Nazionale di AstroÞsica, Italy; LBT Beteiligungsgesellschaft, Germany, representing the Max-Planck Society, the Astrophysical Institute Potsdam, and Heidelberg University; The Ohio State University, and The Research Corporation, on behalf of The University of Notre Dame, University of Minnesota, and University of Virginia.

A Panchromatic View of Brown Dwarf Aurorae

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pineda, J. Sebastian; Hallinan, Gregg; Kao, Melodie M.

Stellar coronal activity has been shown to persist into the low-mass star regime, down to late M-dwarf spectral types. However, there is now an accumulation of evidence suggesting that at the end of the main sequence, there is a transition in the nature of the magnetic activity from chromospheric and coronal to planet-like and auroral, from local impulsive heating via flares and MHD wave dissipation to energy dissipation from strong large-scale magnetospheric current systems. We examine this transition and the prevalence of auroral activity in brown dwarfs through a compilation of multiwavelength surveys of magnetic activity, including radio, X-ray, andmore » optical. We compile the results of those surveys and place their conclusions in the context of auroral emission as a consequence of large-scale magnetospheric current systems that accelerate energetic electron beams and drive the particles to impact the cool atmospheric gas. We explore the different manifestations of auroral phenomena, like H α , in brown dwarf atmospheres and define their distinguishing characteristics. We conclude that large-amplitude photometric variability in the near-infrared is most likely a consequence of clouds in brown dwarf atmospheres, but that auroral activity may be responsible for long-lived stable surface features. We report a connection between auroral H α emission and quiescent radio emission in electron cyclotron maser instability pulsing brown dwarfs, suggesting a potential underlying physical connection between quiescent and auroral emissions. We also discuss the electrodynamic engines powering brown dwarf aurorae and the possible role of satellites around these systems both to power the aurorae and seed the magnetosphere with plasma.« less

A Panchromatic View of Brown Dwarf Aurorae

NASA Astrophysics Data System (ADS)

Pineda, J. Sebastian; Hallinan, Gregg; Kao, Melodie M.

2017-09-01

Stellar coronal activity has been shown to persist into the low-mass star regime, down to late M-dwarf spectral types. However, there is now an accumulation of evidence suggesting that at the end of the main sequence, there is a transition in the nature of the magnetic activity from chromospheric and coronal to planet-like and auroral, from local impulsive heating via flares and MHD wave dissipation to energy dissipation from strong large-scale magnetospheric current systems. We examine this transition and the prevalence of auroral activity in brown dwarfs through a compilation of multiwavelength surveys of magnetic activity, including radio, X-ray, and optical. We compile the results of those surveys and place their conclusions in the context of auroral emission as a consequence of large-scale magnetospheric current systems that accelerate energetic electron beams and drive the particles to impact the cool atmospheric gas. We explore the different manifestations of auroral phenomena, like Hα, in brown dwarf atmospheres and define their distinguishing characteristics. We conclude that large-amplitude photometric variability in the near-infrared is most likely a consequence of clouds in brown dwarf atmospheres, but that auroral activity may be responsible for long-lived stable surface features. We report a connection between auroral Hα emission and quiescent radio emission in electron cyclotron maser instability pulsing brown dwarfs, suggesting a potential underlying physical connection between quiescent and auroral emissions. We also discuss the electrodynamic engines powering brown dwarf aurorae and the possible role of satellites around these systems both to power the aurorae and seed the magnetosphere with plasma.

Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway

USDA-ARS?s Scientific Manuscript database

Plastoglobules (PGs) are plastid lipid-protein particles. This study examines the function of PG-localized kinases ABC1K1 and ABC1K3 in Arabidopsis thaliana. Several lines of evidence suggested that ABC1K1 and ABC1K3 form a protein complex. Null mutants for both genes (abc1k1 and abc1k3) and the dou...

Outer satellite atmospheres: Their nature and planetary interactions

NASA Technical Reports Server (NTRS)

Smyth, W. H.

1981-01-01

Modeling capabilities and initial model calculations are reported for the peculiar directional features of the Io sodium cloud discovered by Pilcher and the extended atomic oxygen atmosphere of Io discovered by Brown. Model results explaining the directional feature by a localized emission from the satellite are encouraging, but as yet, inconclusive; whereas for the oxygen cloud, an escape rate of 1 to 2 x 10 to the 27th power atoms/sec or higher from Io is suggested. Preliminary modeling efforts were also initiated for the extended hydrogen ring-atmosphere of Saturn detected by the Voyager spacecraft and for possible extended atmospheres of some of the smaller satellites located in the E-ring. Continuing research efforts reported for the Io sodium cloud include further refinement in the modeling of the east-west asymmetry data, the asymmetric line profile shape, and the intersection of the cloud with the Io plasma torus. In addition, the completed pre-Voyager modeling of Titan's hydrogen torus is included and the near completed model development for the extended atmosphere of comets is discussed.

TRANSITIONS IN THE CLOUD COMPOSITION OF HOT JUPITERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parmentier, Vivien; Fortney, Jonathan J.; Morley, Caroline

Over a large range of equilibrium temperatures, clouds shape the transmission spectrum of hot Jupiter atmospheres, yet their composition remains unknown. Recent observations show that the Kepler light curves of some hot Jupiters are asymmetric: for the hottest planets, the light curve peaks before secondary eclipse, whereas for planets cooler than ∼1900 K, it peaks after secondary eclipse. We use the thermal structure from 3D global circulation models to determine the expected cloud distribution and Kepler light curves of hot Jupiters. We demonstrate that the change from an optical light curve dominated by thermal emission to one dominated by scatteringmore » (reflection) naturally explains the observed trend from negative to positive offset. For the cool planets the presence of an asymmetry in the Kepler light curve is a telltale sign of the cloud composition, because each cloud species can produce an offset only over a narrow range of effective temperatures. By comparing our models and the observations, we show that the cloud composition of hot Jupiters likely varies with equilibrium temperature. We suggest that a transition occurs between silicate and manganese sulfide clouds at a temperature near 1600 K, analogous to the L / T transition on brown dwarfs. The cold trapping of cloud species below the photosphere naturally produces such a transition and predicts similar transitions for other condensates, including TiO. We predict that most hot Jupiters should have cloudy nightsides, that partial cloudiness should be common at the limb, and that the dayside hot spot should often be cloud-free.« less

Title: Characterizing a Frozen Extrasolar World

NASA Technical Reports Server (NTRS)

Skemer, Andrew J.; Morley, Caroline V.; Allers, Katelyn N.; Geballe, Thomas R.; Marley, Mark S.; Fortney, Jonathan J.; Faherty, Jacqueline K.; Bjoraker, Gordon L.

2016-01-01

The recently discovered brown dwarf WISE 0855 presents our first opportunity to study an object outside the Solar System that is nearly as cold as our own gas giant planets. However the traditional methodology for characterizing brown dwarfs-near infrared spectroscopy-is not currently feasible as WISE 0855 is too cold and faint. To characterize this frozen extrasolar world we obtained a 4.5-5.2 micrometers spectrum, the same bandpass long used to study Jupiter's deep thermal emission. Our spectrum reveals the presence of atmospheric water vapor and clouds, with an absorption profile that is strikingly similar to Jupiter. The spectrum is high enough quality to allow the investigation of dynamical and chemical processes that have long been studied in Jupiter's atmosphere, but this time on an extrasolar world.

[The ABC transporters of Saccharomyces cerevisiae].

PubMed

Wawrzycka, Donata

2011-01-01

The ABC transporters (ATP Binding Cassette) compose one of the bigest protein family with the great medical, industrial and economical impact. They are found in all organism from bacteria to man. ABC proteins are responsible for resistance of microorganism to antibiotics and fungicides and multidrug resistance of cancer cells. Mutations in ABC transporters genes cause seriuos deseases like cystic fibrosis, adrenoleucodystrophy or ataxia. Transport catalized by ABC proteins is charged with energy from the ATP hydrolysis. The ABC superfamily contains transporters, canals, receptors. Analysis of the Saccharomyces cerevisiae genome allowed to distinguish 30 potential ABC proteins which are classified into 6 subfamilies. The structural and functional similarity of the yeast and human ABC proteins allowes to use the S. cerevisiae as a model organism for ABC transporters characterisation. In this work the present state of knowleadge on yeast S. cerevisiae ABC proteins was summarised.

Identification of ABC Transporter Genes of Fusarium graminearum with Roles in Azole Tolerance and/or Virulence

PubMed Central

Döll, Katharina; Karlovsky, Petr; Deising, Holger B.; Wirsel, Stefan G. R.

2013-01-01

Fusarium graminearum is a plant pathogen infecting several important cereals, resulting in substantial yield losses and mycotoxin contamination of the grain. Triazole fungicides are used to control diseases caused by this fungus on a worldwide scale. Our previous microarray study indicated that 15 ABC transporter genes were transcriptionally upregulated in response to tebuconazole treatment. Here, we deleted four ABC transporter genes in two genetic backgrounds of F. graminearum representing the DON (deoxynivalenol) and the NIV (nivalenol) trichothecene chemotypes. Deletion of FgABC3 and FgABC4 belonging to group I of ABC-G and to group V of ABC-C subfamilies of ABC transporters, respectively, considerably increased the sensitivity to the class I sterol biosynthesis inhibitors triazoles and fenarimol. Such effects were specific since they did not occur with any other fungicide class tested. Assessing the contribution of the four ABC transporters to virulence of F. graminearum revealed that, irrespective of their chemotypes, deletion mutants of FgABC1 (ABC-C subfamily group V) and FgABC3 were impeded in virulence on wheat, barley and maize. Phylogenetic context and analyses of mycotoxin production suggests that FgABC3 may encode a transporter protecting the fungus from host-derived antifungal molecules. In contrast, FgABC1 may encode a transporter responsible for the secretion of fungal secondary metabolites alleviating defence of the host. Our results show that ABC transporters play important and diverse roles in both fungicide resistance and pathogenesis of F. graminearum. PMID:24244413

On the Analytical Inversion of Lidar Returns from an Inhomogeneous Atmosphere.

DTIC Science & Technology

1980-04-01

of Clouds and Precipitation (Reidel, Dordrecht, Holand , 1978), pp. 20-21. 5. T. Okita, J. Ileteorol. Soc. Japan, 40, 39 (1962). 6. R. T. Brown, Jr...Cnt %ftl 44b cA Ln. 0Co I (a 0 0 0 i rJnc RANlIe (PER !Ora) F1 "Sure 9 Znversiooms obased Oen Eqs. (14), (16), and (23), with and vithoutIteration, fo

Dusty Disks, Diffuse Clouds, and Dim Suns: Galactic Science with the Infrared Spectrograph on the Spitzer Space Telescope

NASA Technical Reports Server (NTRS)

Roellig, T. L.; Watson, D. M.; Uchida, K. I.; Forrest, W. J.; VanCleve, J. E.; Herter, T. L.; Sloan, G. C.; Furlan, E.; Wilson, J. C.; Bernard-Salas, J.

2004-01-01

The Infrared Spectrograph (IRS) on the Spitzer Space Telescope has now been in routine science operations since Dec. 14,2003. The IRS Science Team has used a portion of their guaranteed time to pursue three major science themes in galactic astronomy: the evolution of protostellar disks and debris disks; the composition and evolution of diffuse matter and clouds in the interstellar medium; and the composition and structure of brown dwarfs and low-mass main-sequence stars. We report here on the results from the first five months of IRS observations in these programs. Full IRS Spectra have already been obtained for large samples of YSO/protoplanetary disks in the Taurus and TW Hya associations, and or debris disks around main-sequence stars, in which many aspects of the evolution of planetary systems can be addressed for the first time. As anticipated, the mid-infrared IRS observations of brown dwarfs have yielded important new information about their atmospheres, including the identification of NH3 and measurements of new methane features. This work is based on observations made with the Spitzer Space Telescope, which is operated by the Jet Propulsion Laboratory, California Institute of Technology under NASA contract 1407. Support for this work was provided by NASA's Office of Space Science.

Dusty Disks, Diffuse Clouds, and Dim Suns - Galactic Science with the Infrared Spectrograph on the Spitzer Space Telescope

NASA Astrophysics Data System (ADS)

Roellig, T. L.; Watson, D. M.; Uchida, K. I.; Forrest, W. J.; Van Cleve, J. E.; Herter, T. L.; Sloan, G. C.; Furlan, E.; Wilson, J. C.; Bernard-Salas, J.; Saumon, D.; Leggett, S.; Chen, C.; Kemper, F.; Hartmann, L.; Marley, M.; Cushing, M.; Mainzer, A. K.; Kirkpatrick, D.; Jura, M.; Houck, J. R.

2004-05-01

The Infrared Spectrograph (IRS) on the Spitzer Space Telescope has now been in routine science operations since Dec. 14, 2003. The IRS Science Team has used a portion of their guaranteed time to pursue three major science themes in galactic astronomy: the evolution of protostellar disks and debris disks; the composition and evolution of diffuse matter and clouds in the interstellar medium; and the composition and structure of brown dwarfs and low-mass main-sequence stars. We report here on the results from the first five months of IRS observations in these programs. Full IRS Spectra have already been obtained for large samples of YSO/protoplanetary disks in the Taurus and TW Hya associations, and of debris disks around main-sequence stars, in which many aspects of the evolution of planetary systems can be addressed for the first time. As anticipated, the mid-infrared IRS observations of brown dwarfs have yielded important new information about their atmospheres, including the identification of NH3 and measurements of new methane features. This work is based on observations made with the Spitzer Space Telescope, which is operated by the Jet Propulsion Laboratory, California Institute of Technology under NASA contract 1407. Support for this work was provided by NASA's Office of Space Science.

Regulation of Expression of abcA and Its Response to Environmental Conditions

PubMed Central

Villet, Regis A.; Truong-Bolduc, Que Chi; Wang, Yin; Estabrooks, Zoe; Medeiros, Heidi

2014-01-01

The ATP-dependent transporter gene abcA in Staphylococcus aureus confers resistance to hydrophobic β-lactams. In strain ISP794, abcA is regulated by the transcriptional regulators MgrA and NorG and shares a 420-nucleotide intercistronic region with the divergently transcribed pbp4 gene, which encodes the transpeptidase Pbp4. Exposure of exponentially growing cells to iron-limited media, oxidative stress, and acidic pH (5.5) for 0.5 to 2 h had no effect on abcA expression. In contrast, nutrient limitation produced a significant increase in abcA transcripts. We identified three additional regulators (SarA, SarZ, and Rot) that bind to the overlapping promoter region of abcA and pbp4 in strain MW2 and investigated their role in the regulation of abcA expression. Expression of abcA is decreased by 10.0-fold in vivo in a subcutaneous abscess model. In vitro, abcA expression depends on rot and sarZ regulators. Moenomycin A exposure of strain MW2 produced an increase in abcA transcripts. Relative to MW2, the MIC of moenomycin was decreased 8-fold for MW2ΔabcA and increased 10-fold for the MW2 abcA overexpresser, suggesting that moenomycin is a substrate of AbcA. PMID:24509312

Lévy flight artificial bee colony algorithm

NASA Astrophysics Data System (ADS)

Sharma, Harish; Bansal, Jagdish Chand; Arya, K. V.; Yang, Xin-She

2016-08-01

Artificial bee colony (ABC) optimisation algorithm is a relatively simple and recent population-based probabilistic approach for global optimisation. The solution search equation of ABC is significantly influenced by a random quantity which helps in exploration at the cost of exploitation of the search space. In the ABC, there is a high chance to skip the true solution due to its large step sizes. In order to balance between diversity and convergence in the ABC, a Lévy flight inspired search strategy is proposed and integrated with ABC. The proposed strategy is named as Lévy Flight ABC (LFABC) has both the local and global search capability simultaneously and can be achieved by tuning the Lévy flight parameters and thus automatically tuning the step sizes. In the LFABC, new solutions are generated around the best solution and it helps to enhance the exploitation capability of ABC. Furthermore, to improve the exploration capability, the numbers of scout bees are increased. The experiments on 20 test problems of different complexities and five real-world engineering optimisation problems show that the proposed strategy outperforms the basic ABC and recent variants of ABC, namely, Gbest-guided ABC, best-so-far ABC and modified ABC in most of the experiments.

CHARACTERIZING THE BROWN DWARF FORMATION CHANNELS FROM THE INITIAL MASS FUNCTION AND BINARY-STAR DYNAMICS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thies, Ingo; Pflamm-Altenburg, Jan; Kroupa, Pavel

2015-02-10

The stellar initial mass function (IMF) is a key property of stellar populations. There is growing evidence that the classical star-formation mechanism by the direct cloud fragmentation process has difficulties reproducing the observed abundance and binary properties of brown dwarfs and very-low-mass stars. In particular, recent analytical derivations of the stellar IMF exhibit a deficit of brown dwarfs compared to observational data. Here we derive the residual mass function of brown dwarfs as an empirical measure of the brown dwarf deficiency in recent star-formation models with respect to observations and show that it is compatible with the substellar part ofmore » the Thies-Kroupa IMF and the mass function obtained by numerical simulations. We conclude that the existing models may be further improved by including a substellar correction term that accounts for additional formation channels like disk or filament fragmentation. The term ''peripheral fragmentation'' is introduced here for such additional formation channels. In addition, we present an updated analytical model of stellar and substellar binarity. The resulting binary fraction and the dynamically evolved companion mass-ratio distribution are in good agreement with observational data on stellar and very-low-mass binaries in the Galactic field, in clusters, and in dynamically unprocessed groups of stars if all stars form as binaries with stellar companions. Cautionary notes are given on the proper analysis of mass functions and the companion mass-ratio distribution and the interpretation of the results. The existence of accretion disks around young brown dwarfs does not imply that these form just like stars in direct fragmentation.« less

The brown dwarf kinematics project

NASA Astrophysics Data System (ADS)

Faherty, Jackie K.

2010-10-01

Brown dwarfs are a recent addition to the plethora of objects studied in Astronomy. With theoretical masses between 13 and 75 MJupiter , they lack sustained stable Hydrogen burning so they never join the stellar main sequence. They have physical properties similar to both planets and low-mass stars so studies of their population inform on both. The distances and kinematics of brown dwarfs provide key statistical constraints on their ages, moving group membership, absolute brightnesses, evolutionary trends, and multiplicity. Yet, until my thesis, fundamental measurements of parallax and proper motion were made for only a relatively small fraction of the known population. To address this deficiency, I initiated the Brown Dwarf Kinematics (BDKP). Over the past four years I have re-imaged the majority of spectroscopically confirmed field brown dwarfs (or ultracool dwarfs---UCDs) and created the largest proper motion catalog for ultracool dwarfs to date. Using new astrometric information I examined population characteristics such as ages calculated from velocity dispersions and correlations between kinematics and colors. Using proper motions, I identified several new wide co-moving companions and investigated binding energy (and hence formation) limitations as well as the frequency of hierarchical companions. Concurrently over the past four years I have been conducting a parallax survey of 84 UCDs including those showing spectral signatures of youth, metal-poor brown dwarfs, and those within 20 pc of the Sun. Using absolute magnitude relations in J,H, and K, I identified overluminous binary candidates and investigated known flux-reversal binaries. Using current evolutionary models, I compared the MK vs J-K color magnitude diagram to model predictions and found that the low-surface gravity dwarfs are significantly red-ward and underluminous of predictions and a handful of late-type T dwarfs may require thicker clouds to account for their scatter.

The XMM-Newton Extended Survey of the Taurus Molecular Cloud (XEST)

NASA Astrophysics Data System (ADS)

Feigelson, Eric; Guedel, M.

2007-12-01

The XMM-Newton Extended Survey of the Taurus Molecular Cloud is an exceptionally large and growing X-ray survey of the Taurus Molecular Cloud (TMC). Now comprising 31 1/2-degree diameter fields, observed with the three XMM-Newton EPIC cameras. High-resolution spectroscopy has been obtained for about ten T Tauri stars (TTS) with the RGS instruments, and the Optical Monitor secured an optical/UV survey. XEST detects essentially the entire surveyed TTS population of the TMC in X-rays including about half of the observed (8/16) brown dwarfs and Class I protostars (8/20). Several new candidate members are identified. The X-ray luminosity (LX) of TTS shows related correlations with both stellar bolometric luminosity and mass. Classical TTS show suppressed X-ray output in the CCD band by a factor of about 2. These statistical results confirm results from other star formation regions. Different from previous reports on TMC, XEST identifies no activity-rotation relation. Brown dwarfs are found to follow trends set by TTS, both for accreting and non-accreting objects. But a decrease of the fractional luminosity, LX/Lbol, is seen with decreasing mass indicating weakened heating efficiency in the substellar domain. XEST reports five members of the class of "Two-Absorber X-Ray" (TAX) sources which reveal a double-peaked spectrum originating from two unrelated sources with different absorption column densities. The softer emission is thought to be related to jets, as explicitly seen in DG Tau. RGS spectroscopy shows a systematic "X-ray soft excess" in classical TTS, suggesting excessive cool (1-2 MK) plasma due to accretion, although the excess seems to correlate with magnetic activity as well. XEST has been supported by the Space Science Institute (Bern/Switz.).

Disks around Failed Stars - a Question of Age

NASA Astrophysics Data System (ADS)

2002-08-01

First Ground-Based Mid-Infrared Observations of Brown Dwarfs [1] Summary A team of European astronomers [2] have observed eight Brown Dwarfs, i.e., small and faint objects also known as "failed stars", with the TIMMI2 infrared sensitive instrument at the ESO 3.6-m telescope on La Silla. From two of these, mid-infrared radiation is detected - for the first time ever from such objects with a ground-based telescope . While the younger Brown Dwarf, aged a few million years, is found to be surrounded by a dusty disk, no warm dust is present around the older ones. The new observations support the following formation hypothesis for Brown Dwarfs: they are born in the same way as "real" stars, by contraction in interstellar clouds of gas and dust . During the later stages of this process, the infalling material is transferred onto the star via a gas and dust disk . This disk - in which planets may possibly form - then disperses with time. PR Photo 17a/02 : Image of Brown Dwarf LP 944-20 PR Photo 17b/02 : Models of the disk around Brown Dwarf Cha HA 2 Brown Dwarfs are faint and cool objects Astronomical objects known as "Brown Dwarfs" are "failed stars" . Their comparatively small mass, less than about 7% of that of our Sun (or about 75 times the mass of planet Jupiter), is too small to achieve sufficiently high pressure and temperature at their centre to ignite energy-producing nuclear processes. Some astronomers also refer to Brown Dwarfs as a "missing link" between planets and stars, being neither one nor the other, yet with similarities to both. They do not burn hydrogen to helium as "real" stars do, but continue to emit faint light as they slowly contract and cool during millions of years. They end their inglorious life with a whimper and finally fade into eternal insignificance. Although Brown Dwarfs were theoretically predicted already in 1963, astronomers had to wait until 1995 for the first one to be discovered. This was mainly due to their extreme faintness as compared to normal stars - even the most nearby Brown Dwarfs shine so faintly that they can only be observed with relatively large telescopes. As they are rather cool objects, they emit mostly in the infrared spectral region; hence they are best observed with astronomical instruments that operate at those wavelengths. With improved techniques, however, more and more Brown Dwarfs have been found and the count has now reached several hundred. Many of these are located in the well-known Orion Nebula. Others move through interstellar space, like the lonely KELU-1 first discovered in 1997 at the ESO La Silla Observatory by Chilean astronomers, cf. ESO PR 07/97.With a distance of only 33 light-years from the Sun, it was one of the closest Brown Dwarfs known at that time. Formation of Brown Dwarfs Astronomers are still doubtful about the way Brown Dwarfs form. Among the numerous suggestions are the star-like contraction from an interstellar cloud of gas and dust and also another based on "ejected stellar embryos" . This latter scenario says that very young stars that are still accreting material are "kicked out of the nest" by their more massive brothers in multiple stellar systems. In this dramatic process, the unlucky objects are stripped of their surrounding disks. This effectively halts their further growth by accretion and they end up as underweight Brown Dwarfs. Recent observations at ESO have shown that the Brown Dwarfs in the Orion Nebula most likely have formed as stars do, i.e. by contraction in a cloud of dust and gas, cf. ESO PR 14/01. The clue to this was the observation of an excess of near-infrared radiation from many of these objects, interpreted as the presence of dusty disks around them. The astronomers then argued that if the young Brown Dwarfs possess such disks exactly like real stars do, then they must also form in the same way. Infrared observations of Brown Dwarfs Those observations were carried out in the near-infrared spectral region (in the 1.2 - 2.2 µm wavelength interval) with the ESO 3.5-m New Technology Telescope (NTT) . However, dusty disks around young stars (and presumably, those around Brown Dwarfs) radiate mostly at longer wavelengths. A detailed study of those disks is therefore best done with instruments that are sensitive to even longer wavelengths, e.g., in the mid-infrared to the sub-millimetre spectral region (10 - 1000 µm). This is in fact the only spectral interval where emission emanating from solid particles can be directly observed and their (mineral) composition thus be analysed. Pioneering observations in this wavelength interval of some Brown Dwarfs were made in mid-1995 by the ESA Infrared Space Observatory. However, the ISO instruments provided comparatively low image sharpness and these observations were hampered by confusion with the radiation from other objects in the same sky field. And the ISO mission was over before Brown Dwarf objects were discovered in larger numbers. Astronomers have therefore long wanted to observe Brown Dwarfs with large ground-based telescopes in the mid-infrared spectral region. But these objects are faint and few suitable instruments that work at these wavelengths are available at the world's large astronomical telescopes. Long exposures are necessary to record the faint emissions and until now, it had not been possible to perform such highly demanding observations of Brown Dwarfs. TIMMI2 observes Brown Dwarfs ESO PR Photo 17a/02 ESO PR Photo 17a/02 [Preview - JPEG: 874 x 400 pix - 75k [Normal - JPEG: 1747 x 800 pix - 752k] ESO PR Photo 17b/02 ESO PR Photo 17b/02 [Preview - JPEG: 400 x 451 pix - 48k] [Normal - JPEG: 800 x 901 pix - 200k] Caption : PR Photo 17a/02 shows the sky field with the nearby Brown Dwarf LP 944-20 at the centre, as photographed in blue (B), red (R) and near-infrared (IR) light (reproduced from the Digital Sky Survey [STScI Digitized Sky Survey, (C) 1993, 1994, AURA, Inc. all rights reserved - cf. http://archive.eso.org/dss/dss]). The object (at the arrow) is obviously very red. Observations with the TIMMI2 instrument at the ESO 3.6-m telescope on La Silla have shown that this comparatively old object does not possess a surrounding disk of dust and gas. Another much younger Brown Dwarf, Cha HA 2 , has one. The new measurements show that this object has a flat, dense disk (lower diagramme in PR Photo 17b/02 ), unlike the hotter (solar-like), young stars, that harbour "flared" disks with a diluted, very hot top layer (upper diagramme). Now, however, the first ground-based detection of mid-infrared radiation from two Brown Dwarfs has been achieved by a team of European astronomers [2], using the Thermal Infrared Multimode Instrument (TIMMI2) on the ESO 3.6-m telescope at the La Silla Observatory (Chile). They pointed the telescope towards a total of eight Brown Dwarf objects and recorded the emission at three different mid-infrared wavelengths (5, 9.8 and 11.9 µm). "We were delighted" , says team leader Daniel Apai, "to detect radiation from two of these with TIMMI2. These are the first observations of their kind with a ground-based instrument. And although we could only establish upper limits for the radiation from the five other objects, these results are highly significant for our attempts to understand the formation and evolution of Brown Dwarfs." One of the objects, known as Cha HA 2 and located in the southern constellation Chamaeleon [3], had earlier been observed with ISO. It is a bona-fide Brown Dwarf object and an image obtained with the Hubble Space Telescope indicates that it may possibly be double. It is a relatively young Brown Dwarf and is a member of the very young Cha I star-forming region - the age has been estimated at 2 - 4.5 million years. The ISO observations hinted at the presence of a dust disk around this object - this is fully confirmed by the new TIMMI2 observations. Moreover, the mid-IR radiation measured with this instrument interestingly shows the absence of a strong emission feature from silicates (at about 10 µm wavelength). According to the astronomers, this indicates that the disk around Cha HA 2 is comparatively dense and flat, and without a heated outer layer, cf. PR Photo 17b/02 . The other Brown Dwarf from which TIMMI2 has now detected mid-infrared radiation is one of the closest of its type. Designated LP 944-20 , it is located in the southern constellation Fornax (The Oven) at a distance of only ~15 light-years. It is much older than Cha HA 2 , though, probably 500 - 650 million years. In this case, the age was determined by measuring the strengths of spectral lines of the element Lithium; the older the object, the less is the content of Lithium. The observations show that the radiation from LP 944-20 comes from the cool star itself - it does not possess a surrounding disk as does the much younger Cha HA 2 [4]. Evolution of Brown Dwarfs Daniel Apai explains: "This all fits very nicely into the current picture of the evolution of Brown Dwarfs. They are born like stars by contraction in an interstellar cloud of gas and dust. At least some of them acquire a surrounding disk during this process. But that disk disperses after some time and we therefore only find it around relatively young Brown Dwarfs, not around older ones." . Nobody knows yet whether planets form in those disks around young Brown Dwarfs (as this was the case in the disk around the young Sun and other stars), but it might happen. Only future observations with much more sensitive instruments will be able to cast more light on this intriguing question. Future observations ESO's Very Large Telescope (VLT) will soon be equipped with the VLT Mid Infrared Spectrometer/Imager (VISIR) , an extremely powerful mid-infrared sensitive instrument that is well suited for this kind of studies. Further into the future, the Atacama Large Millimeter Array (ALMA) will provide excellent opportunities for in-depth investigations of Brown Dwarfs. With unequalled sensitivity and very good image sharpness, ALMA will be able to image disks around the nearest Brown Dwarfs and possibly, to detect signs of (forming) planets in them. More information The information presented in this Press Release is based on a Letter to the Editor in the research journal "Astrophysical Journal" ("Probing Dust around Brown Dwarfs: The Naked LP 944-20 and the Disk of Chamaeleon H-alpha 2" by D. Apai and co-authors (Vol. 573, pp. L115-L117; July 10, 2002). It is available on the web at http://arXiv.org/abs/astro-ph/0206210. Notes [1]: This press release is issued in coordination between ESO and the Max-Planck-Institut für Astronomie (Heidelberg, Germany). A German version is available at the MPIA website ( http://www.mpia.de/Public/Aktuelles/index_de.html ). [2]: The team consists of Daniel Apai , Ilaria Pascucci and Thomas Henning (all at Astrophysikalisches Institut und Universitätssternwarte, Jena, Germany, and Max-Planck-Institut für Astronomie, Heidelberg, Germany), Michael Sterzik (ESO-Chile), Randolf Klein and Dimitri Semenov (Astrophysikalisches Institut und Universitätssternwarte, Jena, Germany), Eike Günther and Bringfried Stecklum (Thüringer Landessternwarte Tautenburg, Germany). [3]: Cha HA 2 stands for "H-alpha emitting object no. 2 in the Chamaeleon I Dark Cloud". [4]: The photosphere of the young Brown Dwarf Cha HA 2 also emits mid-IR radiation. However, it is quite far away - about 500 light-years, or more than 30 times more distant than LP 944-20 - and that radiation is too weak to be detected with TIMMI2.

Validation of Satellite Derived Cloud Properties Over the Southeastern Pacific

NASA Astrophysics Data System (ADS)

Ayers, J.; Minnis, P.; Zuidema, P.; Sun-Mack, S.; Palikonda, R.; Nguyen, L.; Fairall, C.

2005-12-01

Satellite measurements of cloud properties and the radiation budget are essential for understanding meso- and large-scale processes that determine the variability in climate over the southeastern Pacific. Of particular interest in this region is the prevalent stratocumulus cloud deck. The stratocumulus albedos are directly related to cloud microphysical properties that need to be accurately characterized in Global Climate Models (GCMs) to properly estimate the Earth's radiation budget. Meteorological observations in this region are sparse causing large uncertainties in initialized model fields. Remote sensing from satellites can provide a wealth of information about the clouds in this region, but it is vital to validate the remotely sensed parameters and to understand their relationship to other parameters that are not directly observed by the satellites. The variety of measurements from the R/V Roger Revelle during the 2003 STRATUS cruise and from the R/V Ron Brown during EPIC 2001 and the 2004 STRATUS cruises are suitable for validating and improving the interpretation of the satellite derived cloud properties. In this study, satellite-derived cloud properties including coverage, height, optical depth, and liquid water path are compared with in situ measurements taken during the EPIC and STRATUS cruises. The remotely sensed values are derived from Geostationary Operational Environmental Satellite (GOES) imager data, Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellites, and from the Visible and Infrared Scanner (VIRS) aboard the Tropical Rainfall Measuring Mission (TRMM) satellite. The products from this study will include regional monthly cloud climatologies derived from the GOES data for the 2003 and 2004 cruises as well as micro and macro physical cloud property retrievals centered over the ship tracks from MODIS and VIRS.

Genome-Wide Identification, Characterization and Phylogenetic Analysis of ATP-Binding Cassette (ABC) Transporter Genes in Common Carp (Cyprinus carpio).

PubMed

Liu, Xiang; Li, Shangqi; Peng, Wenzhu; Feng, Shuaisheng; Feng, Jianxin; Mahboob, Shahid; Al-Ghanim, Khalid A; Xu, Peng

2016-01-01

The ATP-binding cassette (ABC) gene family is considered to be one of the largest gene families in all forms of prokaryotic and eukaryotic life. Although the ABC transporter genes have been annotated in some species, detailed information about the ABC superfamily and the evolutionary characterization of ABC genes in common carp (Cyprinus carpio) are still unclear. In this research, we identified 61 ABC transporter genes in the common carp genome. Phylogenetic analysis revealed that they could be classified into seven subfamilies, namely 11 ABCAs, six ABCBs, 19 ABCCs, eight ABCDs, two ABCEs, four ABCFs, and 11 ABCGs. Comparative analysis of the ABC genes in seven vertebrate species including common carp, showed that at least 10 common carp genes were retained from the third round of whole genome duplication, while 12 duplicated ABC genes may have come from the fourth round of whole genome duplication. Gene losses were also observed for 14 ABC genes. Expression profiles of the 61 ABC genes in six common carp tissues (brain, heart, spleen, kidney, intestine, and gill) revealed extensive functional divergence among the ABC genes. Different copies of some genes had tissue-specific expression patterns, which may indicate some gene function specialization. This study provides essential genomic resources for future studies in common carp.

Genome-Wide Identification, Characterization and Phylogenetic Analysis of ATP-Binding Cassette (ABC) Transporter Genes in Common Carp (Cyprinus carpio)

PubMed Central

Peng, Wenzhu; Feng, Shuaisheng; Feng, Jianxin; Mahboob, Shahid; Al-Ghanim, Khalid A.

2016-01-01

The ATP-binding cassette (ABC) gene family is considered to be one of the largest gene families in all forms of prokaryotic and eukaryotic life. Although the ABC transporter genes have been annotated in some species, detailed information about the ABC superfamily and the evolutionary characterization of ABC genes in common carp (Cyprinus carpio) are still unclear. In this research, we identified 61 ABC transporter genes in the common carp genome. Phylogenetic analysis revealed that they could be classified into seven subfamilies, namely 11 ABCAs, six ABCBs, 19 ABCCs, eight ABCDs, two ABCEs, four ABCFs, and 11 ABCGs. Comparative analysis of the ABC genes in seven vertebrate species including common carp, showed that at least 10 common carp genes were retained from the third round of whole genome duplication, while 12 duplicated ABC genes may have come from the fourth round of whole genome duplication. Gene losses were also observed for 14 ABC genes. Expression profiles of the 61 ABC genes in six common carp tissues (brain, heart, spleen, kidney, intestine, and gill) revealed extensive functional divergence among the ABC genes. Different copies of some genes had tissue-specific expression patterns, which may indicate some gene function specialization. This study provides essential genomic resources for future studies in common carp. PMID:27058731

X-rays from young stars: A summary of highlights from the XMM-Newton Extended Survey of the Taurus Molecular Cloud (XEST)

NASA Astrophysics Data System (ADS)

Güdel, M.

2008-02-01

The XMM-Newton Extended Survey of the Taurus Molecular Cloud (XEST) is a survey of the nearest large star-forming region, the Taurus Molecular Cloud (TMC), making use of all instruments on board the XMM-Newton X-ray observatory. The survey, presently still growing, has provided unprecedented spectroscopic results from nearly every observed T Tauri star, and from ≈50% of the studied brown dwarfs and protostars. The survey includes the first coherent statistical sample of high-resolution spectra of T Tauri stars, and is accompanied by an U-band/ultraviolet imaging photometric survey of the TMC. XEST led to the discovery of new, systematic X-ray features not possible before with smaller samples, in particular the X-ray soft excess in classical T Tauri stars and the Two-Absorber X-ray (TAX) spectra of jet-driving T Tauri stars. This paper summarizes highlights from XEST and reviews the key role of this large project.

Aneurysmal Bone Cyst: An Analysis of 38 Cases and Report of Four Unusual Surface Ones

PubMed Central

Shooshtarizadeh, Tina; Movahedinia, Sajjadeh; Mostafavi, Hassan; Jamshidi, Khodamorad; Sami, Sam Hajialiloo

2016-01-01

Aneurysmal bone cyst (ABC) is a benign expansile bone tumor, most commonly involving the medulla of long bones. ABC rarely arises within the cortex or in the subperiosteal region, radiographically mimicking other conditions, in particular surface osteosarcomathat is low-grade in nature and may go secondary ABC changes, and telangiectatic osteosarcoma. Both of these are sometimes mistaken microscopically for primary ABC. We review the characteristics of ABC cases in our center and report four unusualsurface ABCs arising in the subperiosteal or cortical region of long bones, identified among 38 histologically proven ABCs during a four-year period in our center. The surface ABCs occurred at an older agewith a predilection for diaphysis of femur, tibia, and humerus. PMID:27200397

Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti.

PubMed

Torres-Quesada, Omar; Millán, Vicenta; Nisa-Martínez, Rafael; Bardou, Florian; Crespi, Martín; Toro, Nicolás; Jiménez-Zurdo, José I

2013-01-01

The legume symbiont Sinorhizobium meliloti expresses a plethora of small noncoding RNAs (sRNAs) whose function is mostly unknown. Here, we have functionally characterized two tandemly encoded S. meliloti Rm1021 sRNAs that are similar in sequence and structure. Homologous sRNAs (designated AbcR1 and AbcR2) have been shown to regulate several ABC transporters in the related α-proteobacteria Agrobacterium tumefaciens and Brucella abortus. In Rm1021, AbcR1 and AbcR2 exhibit divergent unlinked regulation and are stabilized by the RNA chaperone Hfq. AbcR1 is transcribed in actively dividing bacteria, either in culture, rhizosphere or within the invasion zone of mature alfalfa nodules. Conversely, AbcR2 expression is induced upon entry into stationary phase and under abiotic stress. Only deletion of AbcR1 resulted into a discrete growth delay in rich medium, but both are dispensable for symbiosis. Periplasmic proteome profiling revealed down-regulation of the branched-chain amino acid binding protein LivK by AbcR1, but not by AbcR2. A double-plasmid reporter assay confirmed the predicted specific targeting of the 5'-untranslated region of the livK mRNA by AbcR1 in vivo. Our findings provide evidences of independent regulatory functions of these sRNAs, probably to fine-tune nutrient uptake in free-living and undifferentiated symbiotic rhizobia.

Independent Activity of the Homologous Small Regulatory RNAs AbcR1 and AbcR2 in the Legume Symbiont Sinorhizobium meliloti

PubMed Central

Torres-Quesada, Omar; Millán, Vicenta; Nisa-Martínez, Rafael; Bardou, Florian; Crespi, Martín; Toro, Nicolás; Jiménez-Zurdo, José I.

2013-01-01

The legume symbiont Sinorhizobium meliloti expresses a plethora of small noncoding RNAs (sRNAs) whose function is mostly unknown. Here, we have functionally characterized two tandemly encoded S. meliloti Rm1021 sRNAs that are similar in sequence and structure. Homologous sRNAs (designated AbcR1 and AbcR2) have been shown to regulate several ABC transporters in the related α-proteobacteria Agrobacterium tumefaciens and Brucella abortus. In Rm1021, AbcR1 and AbcR2 exhibit divergent unlinked regulation and are stabilized by the RNA chaperone Hfq. AbcR1 is transcribed in actively dividing bacteria, either in culture, rhizosphere or within the invasion zone of mature alfalfa nodules. Conversely, AbcR2 expression is induced upon entry into stationary phase and under abiotic stress. Only deletion of AbcR1 resulted into a discrete growth delay in rich medium, but both are dispensable for symbiosis. Periplasmic proteome profiling revealed down-regulation of the branched-chain amino acid binding protein LivK by AbcR1, but not by AbcR2. A double-plasmid reporter assay confirmed the predicted specific targeting of the 5′-untranslated region of the livK mRNA by AbcR1 in vivo. Our findings provide evidences of independent regulatory functions of these sRNAs, probably to fine-tune nutrient uptake in free-living and undifferentiated symbiotic rhizobia. PMID:23869210

Statistical Hypothesis Testing in Intraspecific Phylogeography: NCPA versus ABC

PubMed Central

Templeton, Alan R.

2009-01-01

Nested clade phylogeographic analysis (NCPA) and approximate Bayesian computation (ABC) have been used to test phylogeographic hypotheses. Multilocus NCPA tests null hypotheses, whereas ABC discriminates among a finite set of alternatives. The interpretive criteria of NCPA are explicit and allow complex models to be built from simple components. The interpretive criteria of ABC are ad hoc and require the specification of a complete phylogeographic model. The conclusions from ABC are often influenced by implicit assumptions arising from the many parameters needed to specify a complex model. These complex models confound many assumptions so that biological interpretations are difficult. Sampling error is accounted for in NCPA, but ABC ignores important sources of sampling error that creates pseudo-statistical power. NCPA generates the full sampling distribution of its statistics, but ABC only yields local probabilities, which in turn make it impossible to distinguish between a good fitting model, a non-informative model, and an over-determined model. Both NCPA and ABC use approximations, but convergences of the approximations used in NCPA are well defined whereas those in ABC are not. NCPA can analyze a large number of locations, but ABC cannot. Finally, the dimensionality of tested hypothesis is known in NCPA, but not for ABC. As a consequence, the “probabilities” generated by ABC are not true probabilities and are statistically non-interpretable. Accordingly, ABC should not be used for hypothesis testing, but simulation approaches are valuable when used in conjunction with NCPA or other methods that do not rely on highly parameterized models. PMID:19192182

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, J; Hill, G; Spiegel, J

Purpose: To investigate the clinical and dosimetric benefits of automatic gating of left breast mixed with breath-hold technique. Methods: Two Active Breathing Control systems, ABC2.0 and ABC3.0, were used during simulation and treatment delivery. The two systems are different such that ABC2.0 is a breath-hold system without beam control capability, while ABC3.0 has capability in both breath-hold and beam gating. At simulation, each patient was scanned twice: one with free breathing (FB) and one with breath hold through ABC. Treatment plan was generated on the CT with ABC. The same plan was also recalculated on the CT with FB. Thesemore » two plans were compared to assess plan quality. For treatments with ABC2.0, beams with MU > 55 were manually split into multiple subfields. All subfields were identical and shared the total MU. For treatment with ABC3.0, beam splitting was unnecessary. Instead, treatment was delivered in gating mode mixed with breath-hold technique. Treatment delivery efficiency using the two systems was compared. Results: The prescribed dose was 50.4Gy at 1.8Gy/fraction. The maximum heart dose averaged over 10 patients was 46.0±2.5Gy and 24.5±12.2Gy for treatments with FB and with ABC respectively. The corresponding heart V10 was 13.2±3.6% and 1.0±1.6% respectively. The averaged MUs were 99.8±7.5 for LMT, 99.2±9.4 for LLT. For treatment with ABC2.0, normally the original beam was split into 2 subfields. The averaged total time to delivery all beams was 4.3±0.4min for treatments with ABC2.0 and 3.3±0.6min for treatments with ABC3.0 in gating mode. Conclusion: Treatment with ABC tremendously reduced heart dose. Compared to treatments with ABC2.0, gating with ABC3.0 reduced the total treatment time by 23%. Use of ABC3.0 improved the delivery efficiency, and eliminated the possibility of mistreatments. The latter may happen with ABC2.0 where beam is not terminated when breath signal falls outside of the treatment window.« less

Catalytic and transport cycles of ABC exporters.

PubMed

Al-Shawi, Marwan K

2011-09-07

ABC (ATP-binding cassette) transporters are arguably the most important family of ATP-driven transporters in biology. Despite considerable effort and advances in determining the structures and physiology of these transporters, their fundamental molecular mechanisms remain elusive and highly controversial. How does ATP hydrolysis by ABC transporters drive their transport function? Part of the problem in answering this question appears to be a perceived need to formulate a universal mechanism. Although it has been generally hoped and assumed that the whole superfamily of ABC transporters would exhibit similar conserved mechanisms, this is proving not to be the case. Structural considerations alone suggest that there are three overall types of coupling mechanisms related to ABC exporters, small ABC importers and large ABC importers. Biochemical and biophysical characterization leads us to the conclusion that, even within these three classes, the catalytic and transport mechanisms are not fully conserved, but continue to evolve. ABC transporters also exhibit unusual characteristics not observed in other primary transporters, such as uncoupled basal ATPase activity, that severely complicate mechanistic studies by established methods. In this chapter, I review these issues as related to ABC exporters in particular. A consensus view has emerged that ABC exporters follow alternating-access switch transport mechanisms. However, some biochemical data suggest that alternating catalytic site transport mechanisms are more appropriate for fully symmetrical ABC exporters. Heterodimeric and asymmetrical ABC exporters appear to conform to simple alternating-access-type mechanisms.

An ATP-driven efflux pump is a novel pathogenicity factor in rice blast disease.

PubMed Central

Urban, M; Bhargava, T; Hamer, J E

1999-01-01

Cells tolerate exposure to cytotoxic compounds through the action of ATP-driven efflux pumps belonging to the ATP-binding cassette (ABC) superfamily of membrane transporters. Phytopathogenic fungi encounter toxic environments during plant invasion as a result of the plant defense response. Here we demonstrate the requirement for an ABC transporter during host infection by the fungal plant pathogen Magnaporthe grisea. The ABC1 gene was identified in an insertional mutagenesis screen for pathogenicity mutants. The ABC1 insertional mutant and a gene-replacement mutant arrest growth and die shortly after penetrating either rice or barley epidermal cells. The ABC1-encoded protein is similar to yeast ABC transporters implicated in multidrug resistance, and ABC1 gene transcripts are inducible by toxic drugs and a rice phytoalexin. However, abc1 mutants are not hypersensitive to antifungal compounds. The non-pathogenic, insertional mutation in ABC1 occurs in the promoter region and dramatically reduces transcript induction by metabolic poisons. These data strongly suggest that M.grisea requires the up-regulation of specific ABC transporters for pathogenesis; most likely to protect itself against plant defense mechanisms. PMID:9927411

4th International Consensus Conference on Advanced Breast Cancer (ABC4), Lisbon, November 4, 2017 : ABC4 Consensus: Assessment by a Panel of German Experts.

PubMed

Untch, Michael; Würstlein, Rachel; Marschner, Norbert; Lüftner, Diana; Augustin, Doris; Briest, Susanne; Ettl, Johannes; Haidinger, Renate; Müller, Lothar; Müller, Volkmar; Ruckhäberle, Eugen; Harbeck, Nadia; Thomssen, Christoph

2018-05-01

The fourth international advanced breast cancer consensus conference (ABC4) on the diagnosis and treatment of advanced breast cancer (ABC) headed by Professor Fatima Cardoso was once again held in Lisbon on November 2 - 4, 2017. To simplify matters, the abbreviation ABC will be used hereinafter in the text. In clinical practice, the abbreviation corresponds to metastatic breast cancer or locally far-advanced disease. This year the focus was on new developments in the treatment of ABC. Topics discussed included the importance of CDK4/6 inhibition in hormone receptor (HR)-positive ABC, the use of dual antibody blockade to treat HER2-positive ABC, PARP inhibition in triple-negative ABC and the potential therapeutic outcomes. Another major area discussed at the conference was BRCA-associated breast cancer, the treatment of cerebral metastasis, and individualized treatment decisions based on molecular testing (so-called precision medicine). As in previous years, close cooperation with representatives from patient organizations from around the world is an important aspect of the ABC conference. This cooperation was reinforced and expanded at the ABC4 conference. A global alliance was founded at the conclusion of the consensus conference, which aims to promote and coordinate the measures considered necessary by patient advocates worldwide. Because the panel of experts was composed of specialists from all over the world, it was inevitable that the ABC consensus also reflected country-specific features. As in previous years, a team of German breast cancer specialists who closely followed the consensus voting of the ABC panelists in Lisbon and intensively discussed the votes has therefore commented on the consensus in the context of the current German guidelines on the diagnosis and treatment of breast cancer 1 ,  2 used in clinical practice in Germany. The ABC consensus is based on the votes of the ABC panelists in Lisbon.

Evaluation of Warm-Rain Microphysical Parameterizations in Cloudy Boundary Layer Transitions

NASA Astrophysics Data System (ADS)

Nelson, K.; Mechem, D. B.

2014-12-01

Common warm-rain microphysical parameterizations used for marine boundary layer (MBL) clouds are either tuned for specific cloud types (e.g., the Khairoutdinov and Kogan 2000 parameterization, "KK2000") or are altogether ill-posed (Kessler 1969). An ideal microphysical parameterization should be "unified" in the sense of being suitable across MBL cloud regimes that include stratocumulus, cumulus rising into stratocumulus, and shallow trade cumulus. The recent parameterization of Kogan (2013, "K2013") was formulated for shallow cumulus but has been shown in a large-eddy simulation environment to work quite well for stratocumulus as well. We report on our efforts to implement and test this parameterization into a regional forecast model (NRL COAMPS). Results from K2013 and KK2000 are compared with the operational Kessler parameterization for a 5-day period of the VOCALS-REx field campaign, which took place over the southeast Pacific. We focus on both the relative performance of the three parameterizations and also on how they compare to the VOCALS-REx observations from the NOAA R/V Ronald H. Brown, in particular estimates of boundary-layer depth, liquid water path (LWP), cloud base, and area-mean precipitation rate obtained from C-band radar.

ARM Cloud-Aerosol-Precipitation Experiment (ACAPEX) Field Campaign Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leung, L Ruby

The U.S. Department of Energy (DOE)’s Atmospheric Radiation Measurement (ARM) Climate Research Facility’s ARM Cloud-Aerosol-Precipitation Experiment (ACAPEX) field campaign contributes to CalWater 2015, a multi-agency field campaign that aims to improve understanding of atmospheric rivers and aerosol sources and transport that influence cloud and precipitation processes. The ultimate goal is to reduce uncertainties in weather predictions and climate projections of droughts and floods in California. With the DOE G-1 aircraft and ARM Mobile Facility 2 (AMF2) well equipped for making aerosol and cloud measurements, ACAPEX focuses specifically on understanding how aerosols from local pollution and long-range transport affect the amountmore » and phase of precipitation associated with atmospheric rivers. ACAPEX took place between January 12, 2015 and March 8, 2015 as part of CalWater 2015, which included four aircraft (DOE G-1, National Oceanic and Atmospheric Administration [NOAA] G-IV and P-3, and National Aeronautics and Space Administration [NASA] ER-2), the NOAA research ship Ron Brown, carrying onboard the AMF2, National Science Foundation (NSF)-sponsored aerosol and precipitation measurements at Bodega Bay, and the California Department of Water Resources extreme precipitation network.« less

UNIFORM ATMOSPHERIC RETRIEVAL ANALYSIS OF ULTRACOOL DWARFS. I. CHARACTERIZING BENCHMARKS, Gl 570D AND HD 3651B

DOE Office of Scientific and Technical Information (OSTI.GOV)

Line, Michael R.; Fortney, Jonathan J.; Teske, Johanna

Interpreting the spectra of brown dwarfs is key to determining the fundamental physical and chemical processes occurring in their atmospheres. Powerful Bayesian atmospheric retrieval tools have recently been applied to both exoplanet and brown dwarf spectra to tease out the thermal structures and molecular abundances to understand those processes. In this manuscript we develop a significantly upgraded retrieval method and apply it to the SpeX spectral library data of two benchmark late T dwarfs, Gl 570D and HD 3651B, to establish the validity of our upgraded forward model parameterization and Bayesian estimator. Our retrieved metallicities, gravities, and effective temperatures are consistentmore » with the metallicity and presumed ages of the systems. We add the carbon-to-oxygen ratio as a new dimension to benchmark systems and find good agreement between carbon-to-oxygen ratios derived in the brown dwarfs and the host stars. Furthermore, we have for the first time unambiguously determined the presence of ammonia in the low-resolution spectra of these two late T dwarfs. We also show that the retrieved results are not significantly impacted by the possible presence of clouds, though some quantities are significantly impacted by uncertainties in photometry. This investigation represents a watershed study in establishing the utility of atmospheric retrieval approaches on brown dwarf spectra.« less

The Joint Aerosol-Monsoon Experiment (JAMEX): A Core Element for the Asian Monsoon Year (2008-2009)

NASA Technical Reports Server (NTRS)

Lau, WIlliam K. M.

2007-01-01

The objective of the Joint Aerosol-Monsoon Experiment (JAMEX) is to unravel the physical mechanisms and multi-scale interactions associated with aerosol-monsoon water cycle in the Asian Indo-Paczj?c region towards improved prediction of rainfall in land regions of the Asian monsoon. JAMEX will be planned as a five-year (2007-201 1) multi-national aerosol-monsoon research project, aimed at promoting collaboration, partnership and alignment of ongoing and planned national and international programs. Two coordinated special observing periods (SOP), covering the pre-monsoon (April-May) and the monsoon (June-August) periods is tentatively targeted for 2008 and 2009. The major work on validation and reference site coordination will take place in 2007 through the spring of 2008. A major science workshop is planned after SOP-I1 in 2010. Modeling and satellite data utilization studies will continue throughout the entire period to help in design of the observation arrays and measurement platforms for SOPS. The tentative time schedule, including milestones and research activities is shown in Fig. 1. One of the unique aspects of JAMEX is that it stems from grass-root scientific and societal imperatives, and it bridges a gap in existing national and international research programs. Currently we have identified 10 major national and international projects/programs separately for aerosols and monsoon research planned in the next five years in China, India, Japan, Italy, and the US, that could be potential contributors or partners with JAMEX. These include the Asian-Indo- Pacific Ocean (AIPO) Project and Aerosol Research Project from China, Monsoon Asian Hydro- Atmospheric Science Research and predication Initiative (MAHASRI) from Japan, Continental Tropical Convergence Zone (CTCZ) and Severe Thunderstorm: Observations and Regional Modeling (STORM) from India, Share-Asia from Italy, Atmospheric Brown Cloud (ABC), Pacific Aerosol-Cloud-Dust Experiment (PACDEX), East Asia Study of Tropospheric Aerosol: an International Regional Experiment (East-AIRE), and Radiation Aerosol Joint Observations - Monsoon Experiments over the Gangetic Himalayas Area (Rajo-Megha: dust cloud in Sanskrit) from the US, and Monsoon Asia Integrated Regional Study (MAIR) under the Earth Systems Science Partnership (ESSP) and WCRP. For JAMEX to succeed, it is crucial for an international body, such as CEOP or an organization under WCRP to provide the science oversight, data policy and stewardship, and to promote collaboration and partnership among national programs. It makes eminent sense for WCRP to expand the concept and the prototype proposed by JAMEX to include all monsoon countries to expand AMY08-09 into an International Monsoon Era (2008- 2013). Such an establishment followed by establishment of an international body for science oversight, and data stewardship will go a long way in promoting coordination and connection among various existing monsoon research programs within WCRP, and with burgeoning national programs on monsoon and aerosol research.

The Joint Aerosol-Monsoon Experiment (JAMEX): A Core Element for the Asian Monsoon Year (2008-2009)

NASA Technical Reports Server (NTRS)

Lau, William K.M.

2007-01-01

The objective of the Joint Aerosol-Monsoon Experiment (JAMEX) is to unravel the physical mechanisms and multi-scale interactions associated with aerosol-monsoon water cycle in the Asian Indo-Pacific region towards improved prediction of rainfall in land regions of the Asian monsoon. JAMEX will be planned as a five-year (2007-201 1) multi-national aerosol-monsoon research project, aimed at promoting collaboration, partnership and alignment of ongoing and planned national and international programs. Two coordinated special observing periods (SOP), covering the pre-monsoon (April-May) and the monsoon (June-August) periods is tentatively targeted for 2008 and 2009. The major work on validation and reference site coordination will take place in 2007 through the spring of 2008. A major science workshop is planned after SOP-I1 in 2010. Modeling and satellite data utilization studies will continue throughout the entire period to help in design of the observation arrays and measurement platforms for SOPS. The tentative time schedule, including milestones and research activities is shown in Fig. 1. One of the unique aspects of JAMEX is that it stems from grass-root scientific and societal imperatives, and it bridges a gap in existing national and international research programs. Currently we have identified 10 major national and international projects/programs separately for aerosols and monsoon research planned in the next five years in China, India, Japan, Italy, and the US, that could be potential contributors or partners with JAMEX. These include the Asian-Indo- Pacific Ocean (AIPO) Project and Aerosol Research Project from China, Monsoon Asian Hydro- Atmospheric Science Research and predication Initiative (MAHASRI) from Japan, Continental Tropical Convergence Zone (CTCZ) and Severe Thunderstorm: Observations and Regional Modeling (STORM) from India, Share-Asia from Italy, Atmospheric Brown Cloud (ABC), Pacific Aerosol-Cloud-Dust Experiment (PACDEX), East Asia Study of Tropospheric Aerosol: an International Regional Experiment (East-AIRE), and Radiation Aerosol Joint Observations - Monsoon Experiments over the Gangetic Himalayas Area (Rajo-Megha: dust cloud in Sanskrit) from the US, and Monsoon Asia Integrated Regional Study (MAIR) under the Earth Systems I Science Partnership (ESSP) and WCRP. For JAMEX to succeed, it is crucial for an international body, such as CEOP or an organization under WCRP to provide the science oversight, data policy and stewardship, and to promote collaboration and partnership among national programs. It makes eminent sense for WCRP to expand the concept and the prototype proposed by JAMEX to include all monsoon countries to expand AMY08-09 into an International Monsoon Era (2008- 2013). Such an establishment followed by establishment of an international body for science oversight, and data stewardship will go a long way in promoting coordination and connection among various existing monsoon research programs within WCRP, and with burgeoning national programs on monsoon and aerosol research.

Sustained delivery of thermostabilized chABC enhances axonal sprouting and functional recovery after spinal cord injury.

PubMed

Lee, Hyunjung; McKeon, Robert J; Bellamkonda, Ravi V

2010-02-23

Chondroitin sulfate proteoglycans (CSPGs) are a major class of axon growth inhibitors that are up-regulated after spinal cord injury (SCI) and contribute to regenerative failure. Chondroitinase ABC (chABC) digests glycosaminoglycan chains on CSPGs and can thereby overcome CSPG-mediated inhibition. But chABC loses its enzymatic activity rapidly at 37 degrees C, necessitating the use of repeated injections or local infusions for a period of days to weeks. These infusion systems are invasive, infection-prone, and clinically problematic. To overcome this limitation, we have thermostabilized chABC and developed a system for its sustained local delivery in vivo, obviating the need for chronically implanted catheters and pumps. Thermostabilized chABC remained active at 37 degrees C in vitro for up to 4 weeks. CSPG levels remained low in vivo up to 6 weeks post-SCI when thermostabilized chABC was delivered by a hydrogel-microtube scaffold system. Axonal growth and functional recovery following the sustained local release of thermostabilized chABC versus a single treatment of unstabilized chABC demonstrated significant differences in CSPG digestion. Animals treated with thermostabilized chABC in combination with sustained neurotrophin-3 delivery showed significant improvement in locomotor function and enhanced growth of cholera toxin B subunit-positive sensory axons and sprouting of serotonergic fibers. Therefore, improving chABC thermostability facilitates minimally invasive, sustained, local delivery of chABC that is potentially effective in overcoming CSPG-mediated regenerative failure. Combination therapy with thermostabilized chABC with neurotrophic factors enhances axonal regrowth, sprouting, and functional recovery after SCI.

The mitochondrial transporter ABC-me (ABCB10), a downstream target of GATA-1, is essential for erythropoiesis in vivo.

PubMed

Hyde, B B; Liesa, M; Elorza, A A; Qiu, W; Haigh, S E; Richey, L; Mikkola, H K; Schlaeger, T M; Shirihai, O S

2012-07-01

The mitochondrial transporter ATP binding cassette mitochondrial erythroid (ABC-me/ABCB10) is highly induced during erythroid differentiation by GATA-1 and its overexpression increases hemoglobin production rates in vitro. However, the role of ABC-me in erythropoiesis in vivo is unknown. Here we report for the first time that erythrocyte development in mice requires ABC-me. ABC-me-/- mice die at day 12.5 of gestation, showing nearly complete eradication of primitive erythropoiesis and lack of hemoglobinized cells at day 10.5. ABC-me-/- erythroid cells fail to differentiate because they exhibit a marked increase in apoptosis, both in vivo and ex vivo. Erythroid precursors are particularly sensitive to oxidative stress and ABC-me in the heart and its yeast ortholog multidrug resistance-like 1 have been shown to protect against oxidative stress. Thus, we hypothesized that increased apoptosis in ABC-me-/- erythroid precursors was caused by oxidative stress. Within this context, ABC-me deletion causes an increase in mitochondrial superoxide production and protein carbonylation in erythroid precursors. Furthermore, treatment of ABC-me-/- erythroid progenitors with the mitochondrial antioxidant MnTBAP (superoxide dismutase 2 mimetic) supports survival, ex vivo differentiation and increased hemoglobin production. Altogether, our findings demonstrate that ABC-me is essential for erythropoiesis in vivo.

75 FR 49549 - ABC & D Recycling, Inc.-Lease and Operation Exemption-a Line of Railroad in Ware, MA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-13

... DEPARTMENT OF TRANSPORTATION Surface Transportation Board [Docket No. FD 35397] ABC & D Recycling, Inc.--Lease and Operation Exemption--a Line of Railroad in Ware, MA ABC & D Recycling, Inc. (ABC & D..., ABC & D Recycling, Inc.--Lease and Operation Exemption--a Line of Railroad in Ware, Massachusetts (STB...

Use of a Short-Form Balance Confidence Scale to Predict Future Recurrent Falls in People With Parkinson Disease.

PubMed

Cole, Michael H; Rippey, Jodi; Naughton, Geraldine A; Silburn, Peter A

2016-01-01

To assess whether the 16-item Activities-specific Balance Confidence scale (ABC-16) and short-form 6-item Activities-specific Balance Confidence scale (ABC-6) could predict future recurrent falls in people with Parkinson disease (PD) and to validate the robustness of their predictive capacities. Twelve-month prospective cohort study. General community. People with idiopathic PD (N=79). Clinical tests were conducted to assess symptom severity, balance confidence, and medical history. Over the subsequent 12 months, participants recorded any falls on daily fall calendars, which they returned monthly by reply paid post. Logistic regression and receiver operating characteristic analyses estimated the sensitivities and specificities of the ABC-16 and ABC-6 for predicting future recurrent falls in this cohort, and "leave-one-out" validation was used to assess their robustness. Of the 79 patients who completed follow-up, 28 (35.4%) fell more than once during the 12-month period. Both the ABC-16 and ABC-6 were significant predictors of future recurrent falls, and moderate sensitivities (ABC-16: 75.0%; ABC-6: 71.4%) and specificities (ABC-16: 76.5%; ABC-6: 74.5%) were reported for each tool for a cutoff score of 77.5 and 65.8, respectively. The results have significant implications and demonstrate that the ABC-16 and ABC-6 independently identify patients with PD at risk of future recurrent falls. Copyright © 2016 American Congress of Rehabilitation Medicine. Published by Elsevier Inc. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Radigan, Jacqueline, E-mail: radigan@stsci.edu

Observations of variability can provide valuable information about the processes of cloud formation and dissipation in brown dwarf atmospheres. Here we report the results of an independent analysis of archival data from the Brown dwarf Atmosphere Monitoring (BAM) program. Time series data for 14 L and T dwarfs reported to be significantly variable over timescales of hours were analyzed. We confirm large-amplitude variability (amplitudes >2%) for 4 out of 13 targets and place upper limits of 0.7%-1.6% on variability in the remaining sample. For two targets we find evidence of weak variability at amplitudes of 1.3% and 1.6%. Based onmore » our revised classification of variable objects in the BAM study, we find strong variability outside the L/T transition to be rare at near infrared wavelengths. From a combined sample of 81 L0-T9 dwarfs from the revised BAM sample and the variability survey of Radigan et al., we infer an overall observed frequency for large-amplitude variability outside the L/T transition of 3.2{sub −1.8}{sup +2.8}%, in contrast to 24{sub −9}{sup +11}% for L9-T3.5 spectral types. We conclude that while strong variability is not limited to the L/T transition, it occurs more frequently in this spectral type range, indicative of larger or more highly contrasting cloud features at these spectral types.« less

Model Atmospheres for Massive Gas Giants with Thick Clouds: Application to the HR 8799 Planets and Predictions for Future Detections

NASA Astrophysics Data System (ADS)

Madhusudhan, Nikku; Burrows, Adam; Currie, Thayne

2011-08-01

We have generated an extensive new suite of massive giant planet atmosphere models and used it to obtain fits to photometric data for the planets HR 8799b, c, and d. We consider a wide range of cloudy and cloud-free models. The cloudy models incorporate different geometrical and optical thicknesses, modal particle sizes, and metallicities. For each planet and set of cloud parameters, we explore grids in gravity and effective temperature, with which we determine constraints on the planet's mass and age. Our new models yield statistically significant fits to the data, and conclusively confirm that the HR 8799 planets have much thicker clouds than those required to explain data for typical L and T dwarfs. Both models with (1) physically thick forsterite clouds and a 60 μm modal particle size and (2) clouds made of 1 μm sized pure iron droplets and 1% supersaturation fit the data. Current data are insufficient to accurately constrain the microscopic cloud properties, such as composition and particle size. The range of best-estimated masses for HR 8799b, HR 8799c, and HR 8799d conservatively span 2-12 MJ , 6-13 MJ , and 3-11 MJ , respectively, and imply coeval ages between ~10 and ~150 Myr, consistent with previously reported stellar ages. The best-fit temperatures and gravities are slightly lower than values obtained by Currie et al. using even thicker cloud models. Finally, we use these models to predict the near-to-mid-IR colors of soon-to-be imaged planets. Our models predict that planet-mass objects follow a locus in some near-to-mid-IR color-magnitude diagrams that is clearly separable from the standard L/T dwarf locus for field brown dwarfs.

PubMed Central

Untch, Michael; Würstlein, Rachel; Marschner, Norbert; Lüftner, Diana; Augustin, Doris; Briest, Susanne; Ettl, Johannes; Haidinger, Renate; Müller, Lothar; Müller, Volkmar; Ruckhäberle, Eugen; Harbeck, Nadia; Thomssen, Christoph

2018-01-01

The fourth international advanced breast cancer consensus conference (ABC4) on the diagnosis and treatment of advanced breast cancer (ABC) headed by Professor Fatima Cardoso was once again held in Lisbon on November 2 – 4, 2017. To simplify matters, the abbreviation ABC will be used hereinafter in the text. In clinical practice, the abbreviation corresponds to metastatic breast cancer or locally far-advanced disease. This year the focus was on new developments in the treatment of ABC. Topics discussed included the importance of CDK4/6 inhibition in hormone receptor (HR)-positive ABC, the use of dual antibody blockade to treat HER2-positive ABC, PARP inhibition in triple-negative ABC and the potential therapeutic outcomes. Another major area discussed at the conference was BRCA-associated breast cancer, the treatment of cerebral metastasis, and individualized treatment decisions based on molecular testing (so-called precision medicine). As in previous years, close cooperation with representatives from patient organizations from around the world is an important aspect of the ABC conference. This cooperation was reinforced and expanded at the ABC4 conference. A global alliance was founded at the conclusion of the consensus conference, which aims to promote and coordinate the measures considered necessary by patient advocates worldwide. Because the panel of experts was composed of specialists from all over the world, it was inevitable that the ABC consensus also reflected country-specific features. As in previous years, a team of German breast cancer specialists who closely followed the consensus voting of the ABC panelists in Lisbon and intensively discussed the votes has therefore commented on the consensus in the context of the current German guidelines on the diagnosis and treatment of breast cancer 1 ,  2 used in clinical practice in Germany. The ABC consensus is based on the votes of the ABC panelists in Lisbon. PMID:29880982

Genome-wide identification, phylogenetic analysis, and expression profiles of ATP-binding cassette transporter genes in the oriental fruit fly, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae).

PubMed

Xiao, Lin-Fan; Zhang, Wei; Jing, Tian-Xing; Zhang, Meng-Yi; Miao, Ze-Qing; Wei, Dan-Dan; Yuan, Guo-Rui; Wang, Jin-Jun

2018-03-01

The ATP-binding cassette (ABC) is the largest transporter gene family and the genes play key roles in xenobiotic resistance, metabolism, and development of all phyla. However, the specific functions of ABC gene families in insects is unclear. We report a genome-wide identification, phylogenetic, and transcriptional analysis of the ABC genes in the oriental fruit fly, Bactrocera dorsalis (Hendel). We identified a total of 47 ABC genes (BdABCs) from the transcriptomic and genomic databases of B. dorsalis and classified these genes into eight subfamilies (A-H), including 7 ABCAs, 7 ABCBs, 9 ABCCs, 2 ABCDs, 1 ABCE, 3 ABCFs, 15 ABCGs, and 3 ABCHs. Comparative phylogenetic analysis of the ABCs suggests an orthologous relationship between B. dorsalis and other insect species in which these genes have been related to pesticide resistance and essential biological processes. Comparison of transcriptome and relative expression patterns of BdABCs indicated diverse multifunctions within different B. dorsalis tissues. The expression of 4, 10, and 14 BdABCs from 18 BdABCs was significantly upregulated after exposure to LD 50 s of malathion, avermectin, and beta-cypermethrin, respectively. The maximum expression level of most BdABCs (including BdABCFs, BdABCGs, and BdABCHs) occurred at 48h post exposures, whereas BdABCEs peaked at 24h after treatment. Furthermore, RNA interference-mediated suppression of BdABCB7 resulted in increased toxicity of malathion against B. dorsalis. These data suggest that ABC transporter genes might play key roles in xenobiotic metabolism and biosynthesis in B. dorsalis. Copyright © 2017 Elsevier Inc. All rights reserved.

Regulation of the ATPase activity of ABCE1 from Pyrococcus abyssi by Fe-S cluster status and Mg²⁺: implication for ribosomal function.

PubMed

Sims, Lynn M; Igarashi, Robert Y

2012-08-15

Ribosomal function is dependent on multiple proteins. The ABCE1 ATPase, a unique ABC superfamily member that bears two Fe₄S₄ clusters, is crucial for ribosomal biogenesis and recycling. Here, the ATPase activity of the Pyrococcus abyssi ABCE1 (PabABCE1) was studied using both apo- (without reconstituted Fe-S clusters) and holo- (with full complement of Fe-S clusters reconstituted post-purification) forms, and is shown to be jointly regulated by the status of Fe-S clusters and Mg²⁺. Typically ATPases require Mg²⁺, as is true for PabABCE1, but Mg²⁺ also acts as a negative allosteric effector that modulates ATP affinity of PabABCE1. Physiological [Mg²⁺] inhibits the PabABCE1 ATPase (K(i) of ∼1 μM) for both apo- and holo-PabABCE1. Comparative kinetic analysis of Mg²⁺ inhibition shows differences in degree of allosteric regulation between the apo- and holo-PabABCE1 where the apparent ATP K(m) of apo-PabABCE1 increases >30-fold from ∼30 μM to over 1 mM with M²⁺. This effect would significantly convert the ATPase activity of PabABCE1 from being independent of cellular energy charge (φ) to being dependent on φ with cellular [Mg²⁺]. These findings uncover intricate overlapping effects by both [Mg²⁺] and the status of Fe-S clusters that regulate ABCE1's ATPase activity with implications to ribosomal function. Copyright © 2012 Elsevier Inc. All rights reserved.

The mitochondrial transporter ABC-me (ABCB10), a downstream target of GATA-1, is essential for erythropoiesis in vivo

PubMed Central

Hyde, B B; Liesa, M; Elorza, A A; Qiu, W; Haigh, S E; Richey, L; Mikkola, H K; Schlaeger, T M; Shirihai, O S

2012-01-01

The mitochondrial transporter ATP binding cassette mitochondrial erythroid (ABC-me/ABCB10) is highly induced during erythroid differentiation by GATA-1 and its overexpression increases hemoglobin production rates in vitro. However, the role of ABC-me in erythropoiesis in vivo is unknown. Here we report for the first time that erythrocyte development in mice requires ABC-me. ABC-me−/− mice die at day 12.5 of gestation, showing nearly complete eradication of primitive erythropoiesis and lack of hemoglobinized cells at day 10.5. ABC-me−/− erythroid cells fail to differentiate because they exhibit a marked increase in apoptosis, both in vivo and ex vivo. Erythroid precursors are particularly sensitive to oxidative stress and ABC-me in the heart and its yeast ortholog multidrug resistance-like 1 have been shown to protect against oxidative stress. Thus, we hypothesized that increased apoptosis in ABC-me−/− erythroid precursors was caused by oxidative stress. Within this context, ABC-me deletion causes an increase in mitochondrial superoxide production and protein carbonylation in erythroid precursors. Furthermore, treatment of ABC-me−/− erythroid progenitors with the mitochondrial antioxidant MnTBAP (superoxide dismutase 2 mimetic) supports survival, ex vivo differentiation and increased hemoglobin production. Altogether, our findings demonstrate that ABC-me is essential for erythropoiesis in vivo. PMID:22240895

On the Huygens absorbing boundary conditions for electromagnetics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berenger, Jean-Pierre

A new absorbing boundary condition (ABC) is presented for the solution of Maxwell equations in unbounded spaces. Called the Huygens ABC, this condition is a generalization of two previously published ABCs, namely the multiple absorbing surfaces (MAS) and the re-radiating boundary condition (rRBC). The properties of the Huygens ABC are derived theoretically in continuous spaces and in the finite-difference (FDTD) discretized space. A solution is proposed to render the Huygens ABC effective for the absorption of evanescent waves. Numerical experiments with the FDTD method show that the effectiveness of the Huygens ABC is close to that of the PML ABCmore » in some realistic problems of numerical electromagnetics. It is also shown in the paper that a combination of the Huygens ABC with the PML ABC is very well suited to the solution of some particular problems.« less

A Galactic Spectacle

NASA Image and Video Library

2010-08-05

NASA image release August 5, 2010 A beautiful new image of two colliding galaxies has been released by NASA's Great Observatories. The Antennae galaxies, located about 62 million light-years from Earth, are shown in this composite image from the Chandra X-ray Observatory (blue), the Hubble Space Telescope (gold and brown), and the Spitzer Space Telescope (red). The Antennae galaxies take their name from the long antenna-like "arms," seen in wide-angle views of the system. These features were produced by tidal forces generated in the collision. The collision, which began more than 100 million years ago and is still occurring, has triggered the formation of millions of stars in clouds of dusts and gas in the galaxies. The most massive of these young stars have already sped through their evolution in a few million years and exploded as supernovas. The X-ray image from Chandra shows huge clouds of hot, interstellar gas that have been injected with rich deposits of elements from supernova explosions. This enriched gas, which includes elements such as oxygen, iron, magnesium, and silicon, will be incorporated into new generations of stars and planets. The bright, point-like sources in the image are produced by material falling onto black holes and neutron stars that are remnants of the massive stars. Some of these black holes may have masses that are almost one hundred times that of the Sun. The Spitzer data show infrared light from warm dust clouds that have been heated by newborn stars, with the brightest clouds lying in the overlapping region between the two galaxies. The Hubble data reveal old stars and star-forming regions in gold and white, while filaments of dust appear in brown. Many of the fainter objects in the optical image are clusters containing thousands of stars. The Chandra image was taken in December 1999. The Spitzer image was taken in December 2003. The Hubble image was taken in July 2004, and February 2005. Credit: NASA, ESA, SAO, CXC, JPL-Caltech, and STScI Acknowledgment: G. Fabbiano and Z. Wang (Harvard-Smithsonian CfA), and B. Whitmore (STScI)

AEOLUS: A MARKOV CHAIN MONTE CARLO CODE FOR MAPPING ULTRACOOL ATMOSPHERES. AN APPLICATION ON JUPITER AND BROWN DWARF HST LIGHT CURVES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karalidi, Theodora; Apai, Dániel; Schneider, Glenn

Deducing the cloud cover and its temporal evolution from the observed planetary spectra and phase curves can give us major insight into the atmospheric dynamics. In this paper, we present Aeolus, a Markov chain Monte Carlo code that maps the structure of brown dwarf and other ultracool atmospheres. We validated Aeolus on a set of unique Jupiter Hubble Space Telescope (HST) light curves. Aeolus accurately retrieves the properties of the major features of the Jovian atmosphere, such as the Great Red Spot and a major 5 μm hot spot. Aeolus is the first mapping code validated on actual observations of amore » giant planet over a full rotational period. For this study, we applied Aeolus to J- and H-band HST light curves of 2MASS J21392676+0220226 and 2MASS J0136565+093347. Aeolus retrieves three spots at the top of the atmosphere (per observational wavelength) of these two brown dwarfs, with a surface coverage of 21% ± 3% and 20.3% ± 1.5%, respectively. The Jupiter HST light curves will be publicly available via ADS/VIZIR.« less

A Report of Clouds on Titan

NASA Astrophysics Data System (ADS)

Corlies, Paul; Hayes, Alexander; Adamkovics, Mate; Rodriguez, Sebastien; Kelland, John; Turtle, Elizabeth P.; Mitchell, Jonathan; Lora, Juan M.; Rojo, Patricio; Lunine, Jonathan I.

2017-10-01

We present in this work a detailed analysis of many of the clouds in the Cassini Visual and Infrared Mapping Spectrometer (VIMS) dataset in order to understand their global and seasonal properties. Clouds are one of the few direct observables in Titan’s atmosphere (Griffith et al 2009, Rodriguez et al 2009, Adamkovics et al 2010), and so determining their characteristics allows for a better understanding of surface atmosphere interactions, winds, transport of volatile material, and general circulation. We find the clouds on Titan generally reside in at 5-15km altitude, which agrees with previous modelling efforts (Rafkin et al. 2015), as well as a power law distribution for cloud optical depth. We assume an average cloud droplet size of 100um. No seasonal dependence is observed with either cloud altitude or optical depth, suggesting there is no preferred seasonal formation mechanisms. Combining these characteristics with cloud size (Kelland et al 2017) can trace the transport of volatiles in Titan’s atmosphere, which can be compared against general circulation models (GCMs) (Lora et al 2015). We also present some specific analysis of interesting cloud systems including hypothesized surface fogs (Brown et al 2009) and orographic cloud formation (Barth et al 2010, Corlies et al 2017). In this analysis we use a correlation between Cassini VIMS and RADAR observations as well as an updated topographic map of Titan’s southern hemisphere to better understand the role that topography plays in influencing and driving atmospheric phenomena.Finally, with the end of the Cassini mission, ground based observing now acts as the only means with which to observe clouds on Titan. We present an update of an ongoing cloud campaign to search for clouds on Titan and to understand their seasonal evolution.References:Adamkovics et al. 2010, Icarus 208:868Barth et al. 2010, Planet. Space Sci. 58:1740Corlies et al. 2017, 48th LPSC, 2870CGriffith et al. 2009, ApJ 702:L105Kelland et al. 2017, 48th LPSC, 2748KLora et al. 2015, Icarus 250:516Rafkin et al. 2015, J. Geophys. Res. 120:739Rodriguez et al. 2009, Nature 459:678

Investigating the compatibility of the biocontrol agent Clonostachys rosea IK726 with prodigiosin-producing Serratia rubidaea S55 and phenazine-producing Pseudomonas chlororaphis ToZa7.

PubMed

Kamou, Nathalie N; Dubey, Mukesh; Tzelepis, Georgios; Menexes, Georgios; Papadakis, Emmanouil N; Karlsson, Magnus; Lagopodi, Anastasia L; Jensen, Dan Funck

2016-05-01

This study was carried out to assess the compatibility of the biocontrol fungus Clonostachys rosea IK726 with the phenazine-producing Pseudomonas chlororaphis ToZa7 or with the prodigiosin-producing Serratia rubidaea S55 against Fusarium oxysporum f. sp. radicis-lycopersici. The pathogen was inhibited by both strains in vitro, whereas C. rosea displayed high tolerance to S. rubidaea but not to P. chlororaphis. We hypothesized that this could be attributed to the ATP-binding cassette (ABC) proteins. The results of the reverse transcription quantitative PCR showed an induction of seven genes (abcB1, abcB20, abcB26, abcC12, abcC12, abcG8 and abcG25) from subfamilies B, C and G. In planta experiments showed a significant reduction in foot and root rot on tomato plants inoculated with C. rosea and P. chlororaphis. This study demonstrates the potential for combining different biocontrol agents and suggests an involvement of ABC transporters in secondary metabolite tolerance in C. rosea.

Moist convection and the 2010-2011 revival of Jupiter's South Equatorial Belt

NASA Astrophysics Data System (ADS)

Fletcher, Leigh N.; Orton, G. S.; Rogers, J. H.; Giles, R. S.; Payne, A. V.; Irwin, P. G. J.; Vedovato, M.

2017-04-01

The transformation of Jupiter's South Equatorial Belt (SEB) from its faded, whitened state in 2009-2010 (Fletcher et al., 2011b) to its normal brown appearance is documented via comparisons of thermal-infrared (5-20 μm) and visible-light imaging between November 2010 and November 2011. The SEB revival consisted of convective eruptions triggered over ∼100 days, potentially powered by the latent heat released by the condensation of water. The plumes rise from the water cloud base and ultimately diverge and cool in the stably-stratified upper troposphere. Thermal-IR images from the Very Large Telescope (VLT) were acquired 2 days after the SEB disturbance was first detected as a small white spot by amateur observers on November 9th 2010. Subsequent images over several months revealed the cold, putatively anticyclonic and cloudy plume tops (area 2.5 × 106 km2) surrounded by warm, cloud-free conditions at their peripheries due to subsidence. The latent heating was not directly detectable in the 5-20 μm range. The majority of the plumes erupted from a single source near 140 -160∘ W, coincident with the remnant cyclonic circulation of a brown barge that had formed during the fade. The warm remnant of the cyclone could still be observed in IRTF imaging 5 days before the November 9th eruption. Additional plumes erupted from the leading edge of the central disturbance immediately east of the source, which propagated slowly eastwards to encounter the Great Red Spot. The tropospheric plumes were sufficiently vigorous to excite stratospheric thermal waves over the SEB with a 20 -30∘ longitudinal wavelength and 5-6 K temperature contrasts at 5 mbar, showing a direct connection between moist convection and stratospheric wave activity. The subsidence and compressional heating of dry, unsaturated air warmed the troposphere (particularly to the northwest of the central branch of the revival) and removed the aerosols that had been responsible for the fade. Dark, cloud-free lanes west of the plumes were the first to show the colour change, and elongated due to the zonal windshear to form the characteristic 'S-shape' of the revival complex. The aerosol-free air was redistributed and mixed throughout the SEB by the zonal flow, following a westward-moving southern branch and an eastward-moving northern branch that revived the brown colouration over ∼200 days. The transition from the cool conditions of the SEBZ during the fade to the revived SEB caused a 2-4 K rise in 500-mbar temperatures (leaving a particularly warm southern SEB) and a reduction of aerosol opacity by factors of 2-3. Newly-cleared gaps in the upper tropospheric aerosol layer appeared different in filters sensing the ∼700-mbar cloud deck and the 2-3 bar cloud deck, suggesting complex vertical structure in the downdrafts. The last stage of the revival was the re-establishment of normal convective activity northwest of the GRS in September 2011, ∼840 days after the last occurrence in June 2009. Moist convection may therefore play an important role in controlling the timescale and atmospheric variability during the SEB life cycle.

50 CFR 622.60 - Adjustment of management measures.

Code of Federal Regulations, 2013 CFR

2013-10-01

... markings and identification, allowable biological catch (ABC) and ABC control rules, rebuilding plans, sale... harvested shrimp (maintaining shrimp in whole condition, use as bait), target effort and fishing mortality... identification, vessel markings and identification, ABC and ABC control rules, rebuilding plans, sale and...

50 CFR 622.60 - Adjustment of management measures.

Code of Federal Regulations, 2014 CFR

2014-10-01

... markings and identification, allowable biological catch (ABC) and ABC control rules, rebuilding plans, sale... harvested shrimp (maintaining shrimp in whole condition, use as bait), target effort and fishing mortality... identification, vessel markings and identification, ABC and ABC control rules, rebuilding plans, sale and...

Are Brown Barges the Deserts of the Upper Jovian Atmosphere?

NASA Astrophysics Data System (ADS)

Orton, Glenn S.; Sinclair, James; Fletcher, Leigh; Fujiyoshi, Takuya; Yanamandra-Fisher, Padma; Rogers, John; Irwin, Patrick; Greathouse, Thomas; Seede, Raiyan; Simon, Jason; Nguyen, Marian; Lai, Matthew

2015-11-01

Since the descent of the Galileo probe into one of Jupiter’s 5-µm hot spots, these regions have been characterized as the driest and clearest regions on the planet. We are presenting evidence that this generalization could be premature, at least for Jupiter’s upper troposphere. Diffraction-limited mid-infrared images of Jupiter taken from the Subaru Telescope using the COMICS instrument, the Very Large Telescope (UT3) using the VISIR instrument, and the Gemini South Telescope using the T-ReCS instrument resolve regions with the highest brightness anywhere on the planet at wavelengths near 9.8-10.5 µm, a region sensitive to the abundance of ammonia gas above its condensation level. These brightnesses are so high that they require ammonia abundances that are many times lower than anywhere else on the planet. A similar drop of the optical thicknesses of clouds near the ammonia-gas condensation level is required, diagnosed using 8.7-8.9-µm radiances. These features are also detected but not spatially resolved in observations obtained at NASA’s Infrared Telescope Facility using the MIRSI imager and the TEXES scanning spectrometer. Most are located along the northern edge of the North Equatorial Belt and are associated with cyclonic features known as “brown barges”. They are not associated with detectable changes in upper-tropospheric temperatures, requiring convective activity to take place at depths with very rapid dynamical readjustment. Regions bright at 8-10 µm are not always bright in the deep 5-µm window, implying that some brown barges are clear of condensate gases and clouds only down to 0.6 bars but others are clear down to 2-3 bars, a possible consequence of observing them in different phases of their “life cycle”. These, other discrete features and broader regions will be the objects of intensive investigations by the Juno mission and associated Earth-based observational support in 2016 to 2018.

Implementation of a Brown Carbon Parameterization in the Community Earth System Model (CESM): Model Validation, Estimation of Brown Carbon Radiative Effect, and Climate Impact

NASA Astrophysics Data System (ADS)

Brown, Hunter Y.

A recent development in the representation of aerosols in climate models is the realization that some components of organic carbon (OC), emitted from biomass and biofuel burning, can have a significant contribution to short-wave radiation absorption in the atmosphere. The absorbing fraction of OC is referred to as brown carbon (BrC). This study introduces one of the first implementations of BrC into the Community Earth System Model (CESM), using a parameterization for BrC absorption described in Saleh et al. (2014). 9-year experiments are run (2003-2011) with prescribed emissions and sea surface temperatures to analyze the effect of BrC in the atmosphere. Model validation is conducted via model comparison to single-scatter albedo (SSA) and aerosol optical depth from the Aerosol Robotic Network (AERONET), as well as comparison with a laboratory derived parameterization for SSA dependent on the (black carbon (BC))/(BC+OC) ratio in biomass burning emissions. These comparisons reveal a model underestimation of SSA in biomass burning regions for both default and BrC model runs. Global annual average radiative effects are calculated due to aerosol-radiation interactions (REari; 0.13+/-0.021 W m -2), aerosol-cloud interactions (REaci; 0.07+/-0.056 W m -2), and surface albedo change (REsac; -0.06+/-0.035 W m -2). REari is similar to other studies' estimations of BrC direct radiative effect, while REaci indicates a global reduction in low clouds due to the BrC semi-direct effect. REsac suggests increased surface albedo with BrC implementation due to modified snowfall, but does not take into account the warming effect of BrC on snow. Lastly, comparisons of BrC implementation approaches find that this implementation may do a better job of estimating BrC radiative effect in the Arctic regions than previous studies with CESM.

THE SPECTRAL ENERGY DISTRIBUTION OF THE COLDEST KNOWN BROWN DWARF

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luhman, K. L.; Esplin, T. L., E-mail: kluhman@astro.psu.edu

2016-09-01

WISE J085510.83–071442.5 (hereafter WISE 0855–0714) is the coldest known brown dwarf (∼250 K) and the fourth-closest known system to the Sun (2.2 pc). It has been previously detected only in the J band and two mid-IR bands. To better measure its spectral energy distribution (SED), we have performed deep imaging of WISE 0855–0714 in six optical and near-IR bands with Gemini Observatory, the Very Large Telescope, and the Hubble Space Telescope . Five of the bands show detections, although one detection is marginal (S/N ∼ 3). We also have obtained two epochs of images with the Spitzer Space Telescope for use inmore » refining the parallax of the brown dwarf. By combining astrometry from this work and previous studies, we have derived a parallax of 0.449 ± 0.008″ (2.23 ± 0.04 pc). We have compared our photometry for WISE 0855–0714 to data for known Y dwarfs and to the predictions of three suites of models by Saumon et al. and Morley et al. that are defined by the presence or absence of clouds and nonequilibrium chemistry. Our estimates of Y − J and J − H for WISE 0855–0714 are redder than colors of other Y dwarfs, confirming a predicted reversal of near-IR colors to redder values at temperatures below 300–400 K. In color–magnitude diagrams, no single suite of models provides a clearly superior match to the sequence formed by WISE 0855–0714 and other Y dwarfs. Instead, the best-fitting model changes from one diagram to the next. Similarly, all of the models have substantial differences from the SED of WISE 0855–0714. As a result, we are currently unable to constrain the presence of clouds or nonequilibrium chemistry in its atmosphere.« less

Predicting Ground Illuminance

NASA Astrophysics Data System (ADS)

Lesniak, Michael V.; Tregoning, Brett D.; Hitchens, Alexandra E.

2015-01-01

Our Sun outputs 3.85 x 1026 W of radiation, of which roughly 37% is in the visible band. It is directly responsible for nearly all natural illuminance experienced on Earth's surface, either in the form of direct/refracted sunlight or in reflected light bouncing off the surfaces and/or atmospheres of our Moon and the visible planets. Ground illuminance, defined as the amount of visible light intercepting a unit area of surface (from all incident angles), varies over 7 orders of magnitude from day to night. It is highly dependent on well-modeled factors such as the relative positions of the Sun, Earth, and Moon. It is also dependent on less predictable factors such as local atmospheric conditions and weather.Several models have been proposed to predict ground illuminance, including Brown (1952) and Shapiro (1982, 1987). The Brown model is a set of empirical data collected from observation points around the world that has been reduced to a smooth fit of illuminance against a single variable, solar altitude. It provides limited applicability to the Moon and for cloudy conditions via multiplicative reduction factors. The Shapiro model is a theoretical model that treats the atmosphere as a three layer system of light reflectance and transmittance. It has different sets of reflectance and transmittance coefficients for various cloud types.In this paper we compare the models' predictions to ground illuminance data from an observing run at the White Sands missile range (data was obtained from the United Kingdom's Meteorology Office). Continuous illuminance readings were recorded under various cloud conditions, during both daytime and nighttime hours. We find that under clear skies, the Shapiro model tends to better fit the observations during daytime hours with typical discrepancies under 10%. Under cloudy skies, both models tend to poorly predict ground illuminance. However, the Shapiro model, with typical average daytime discrepancies of 25% or less in many cases, performed somewhat better than the Brown model during daytime hours. During nighttime hours under cloudy skies, both models produced erratic results.

Deciphering the Routes of invasion of Drosophila suzukii by Means of ABC Random Forest.

PubMed

Fraimout, Antoine; Debat, Vincent; Fellous, Simon; Hufbauer, Ruth A; Foucaud, Julien; Pudlo, Pierre; Marin, Jean-Michel; Price, Donald K; Cattel, Julien; Chen, Xiao; Deprá, Marindia; François Duyck, Pierre; Guedot, Christelle; Kenis, Marc; Kimura, Masahito T; Loeb, Gregory; Loiseau, Anne; Martinez-Sañudo, Isabel; Pascual, Marta; Polihronakis Richmond, Maxi; Shearer, Peter; Singh, Nadia; Tamura, Koichiro; Xuéreb, Anne; Zhang, Jinping; Estoup, Arnaud

2017-04-01

Deciphering invasion routes from molecular data is crucial to understanding biological invasions, including identifying bottlenecks in population size and admixture among distinct populations. Here, we unravel the invasion routes of the invasive pest Drosophila suzukii using a multi-locus microsatellite dataset (25 loci on 23 worldwide sampling locations). To do this, we use approximate Bayesian computation (ABC), which has improved the reconstruction of invasion routes, but can be computationally expensive. We use our study to illustrate the use of a new, more efficient, ABC method, ABC random forest (ABC-RF) and compare it to a standard ABC method (ABC-LDA). We find that Japan emerges as the most probable source of the earliest recorded invasion into Hawaii. Southeast China and Hawaii together are the most probable sources of populations in western North America, which then in turn served as sources for those in eastern North America. European populations are genetically more homogeneous than North American populations, and their most probable source is northeast China, with evidence of limited gene flow from the eastern US as well. All introduced populations passed through bottlenecks, and analyses reveal five distinct admixture events. These findings can inform hypotheses concerning how this species evolved between different and independent source and invasive populations. Methodological comparisons indicate that ABC-RF and ABC-LDA show concordant results if ABC-LDA is based on a large number of simulated datasets but that ABC-RF out-performs ABC-LDA when using a comparable and more manageable number of simulated datasets, especially when analyzing complex introduction scenarios. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Subjective Mapping of Dust-Emission Sources by Using MODIS Imagery

DTIC Science & Technology

2017-05-01

within the inset of Panel A. Panel A is a True Color image that depicts white clouds against a brown landscape; a bird’s eye representation of Earth...shows the location of the Hamun dry lakes, which are an important dust source in the region. The enlarged image box in the top right depicts the...Bacon and McDonald 2016). For example, dry lakebeds filled with unconsolidated ERDC/CRREL TR-17-8 4 fine-grained sediments are commonly

Panoramic View of the Andes Mountains, Chile and Argentina

NASA Technical Reports Server (NTRS)

1992-01-01

This panoramic view of the Andes Mountains of Chile and Argentina (24.5S, 69.5W) is dominated by the yellows and browns of the coastal Atacama Desert and the full width of the Andes altiplano, about 300 miles. Winter snow can be seen capping the 22,000 to 23,000 ft. peaks of the Andes. Wisps of cirrus clouds lie over the altiplano and offshore fog obscures the coast. In the distance, the low Chaco Plain appears green with pastures and agriculture.

Development of a practical costing method for hospitals.

PubMed

Cao, Pengyu; Toyabe, Shin-Ichi; Akazawa, Kouhei

2006-03-01

To realize an effective cost control, a practical and accurate cost accounting system is indispensable in hospitals. In traditional cost accounting systems, the volume-based costing (VBC) is the most popular cost accounting method. In this method, the indirect costs are allocated to each cost object (services or units of a hospital) using a single indicator named a cost driver (e.g., Labor hours, revenues or the number of patients). However, this method often results in rough and inaccurate results. The activity based costing (ABC) method introduced in the mid 1990s can prove more accurate results. With the ABC method, all events or transactions that cause costs are recognized as "activities", and a specific cost driver is prepared for each activity. Finally, the costs of activities are allocated to cost objects by the corresponding cost driver. However, it is much more complex and costly than other traditional cost accounting methods because the data collection for cost drivers is not always easy. In this study, we developed a simplified ABC (S-ABC) costing method to reduce the workload of ABC costing by reducing the number of cost drivers used in the ABC method. Using the S-ABC method, we estimated the cost of the laboratory tests, and as a result, similarly accurate results were obtained with the ABC method (largest difference was 2.64%). Simultaneously, this new method reduces the seven cost drivers used in the ABC method to four. Moreover, we performed an evaluation using other sample data from physiological laboratory department to certify the effectiveness of this new method. In conclusion, the S-ABC method provides two advantages in comparison to the VBC and ABC methods: (1) it can obtain accurate results, and (2) it is simpler to perform. Once we reduce the number of cost drivers by applying the proposed S-ABC method to the data for the ABC method, we can easily perform the cost accounting using few cost drivers after the second round of costing.

Thermo-responsive magnetic liposomes for hyperthermia-triggered local drug delivery.

PubMed

Dai, Min; Wu, Cong; Fang, Hong-Ming; Li, Li; Yan, Jia-Bao; Zeng, Dan-Lin; Zou, Tao

2017-06-01

We prepared and characterised thermo-responsive magnetic liposomes, which were designed to combine features of magnetic targeting and thermo-responsive control release for hyperthermia-triggered local drug delivery. The particle size and zeta-potential of the thermo-responsive magnetic ammonium bicarbonate (MagABC) liposomes were about 210 nm and -14 mV, respectively. The MagABC liposomes showed encapsulation efficiencies of about 15% and 82% for magnetic nanoparticles (mean crystallite size 12 nm) and doxorubicin (DOX), respectively. The morphology of the MagABC liposomes was visualised using transmission electron microscope (TEM). The MagABC liposomes showed desired thermo-responsive release. The MagABC liposomes, when physically targeted to tumour cells in culture by a permanent magnetic field yielded a substantial increase in intracellular accumulation of DOX as compared to non-magnetic ammonium bicarbonate (ABC) liposomes. This resulted in a parallel increase in cytotoxicity for DOX loaded MagABC liposomes over DOX loaded ABC liposomes in tumour cells.

High-contrast imaging in the cloud with klipReduce and Findr

NASA Astrophysics Data System (ADS)

Haug-Baltzell, Asher; Males, Jared R.; Morzinski, Katie M.; Wu, Ya-Lin; Merchant, Nirav; Lyons, Eric; Close, Laird M.

2016-08-01

Astronomical data sets are growing ever larger, and the area of high contrast imaging of exoplanets is no exception. With the advent of fast, low-noise detectors operating at 10 to 1000 Hz, huge numbers of images can be taken during a single hours-long observation. High frame rates offer several advantages, such as improved registration, frame selection, and improved speckle calibration. However, advanced image processing algorithms are computationally challenging to apply. Here we describe a parallelized, cloud-based data reduction system developed for the Magellan Adaptive Optics VisAO camera, which is capable of rapidly exploring tens of thousands of parameter sets affecting the Karhunen-Loève image processing (KLIP) algorithm to produce high-quality direct images of exoplanets. We demonstrate these capabilities with a visible wavelength high contrast data set of a hydrogen-accreting brown dwarf companion.

A Neisseria meningitidis fbpABC mutant is incapable of using nonheme iron for growth.

PubMed

Khun, H H; Kirby, S D; Lee, B C

1998-05-01

The neisserial fbpABC locus has been proposed to act as an iron-specific ABC transporter system. To confirm this assigned function, we constructed an fbpABC mutant in Neisseria meningitidis by insertional inactivation of fbpABC with a selectable antibiotic marker. The mutant was unable to use iron supplied from human transferrin, human lactoferrin, or iron chelates. However, the use of iron from heme and human hemoglobin was unimpaired. These results support the obligatory participation of fbpABC in neisserial periplasmic iron transport and do not indicate a role for this genetic locus in the heme iron pathway.

A Neisseria meningitidis fbpABC Mutant Is Incapable of Using Nonheme Iron for Growth

PubMed Central

Khun, Heng H.; Kirby, Shane D.; Lee, B. Craig

1998-01-01

The neisserial fbpABC locus has been proposed to act as an iron-specific ABC transporter system. To confirm this assigned function, we constructed an fbpABC mutant in Neisseria meningitidis by insertional inactivation of fbpABC with a selectable antibiotic marker. The mutant was unable to use iron supplied from human transferrin, human lactoferrin, or iron chelates. However, the use of iron from heme and human hemoglobin was unimpaired. These results support the obligatory participation of fbpABC in neisserial periplasmic iron transport and do not indicate a role for this genetic locus in the heme iron pathway. PMID:9573125

Modified artificial bee colony for the vehicle routing problems with time windows.

PubMed

Alzaqebah, Malek; Abdullah, Salwani; Jawarneh, Sana

2016-01-01

The natural behaviour of the honeybee has attracted the attention of researchers in recent years and several algorithms have been developed that mimic swarm behaviour to solve optimisation problems. This paper introduces an artificial bee colony (ABC) algorithm for the vehicle routing problem with time windows (VRPTW). A Modified ABC algorithm is proposed to improve the solution quality of the original ABC. The high exploration ability of the ABC slows-down its convergence speed, which may due to the mechanism used by scout bees in replacing abandoned (unimproved) solutions with new ones. In the Modified ABC a list of abandoned solutions is used by the scout bees to memorise the abandoned solutions, then the scout bees select a solution from the list based on roulette wheel selection and replace by a new solution with random routs selected from the best solution. The performance of the Modified ABC is evaluated on Solomon benchmark datasets and compared with the original ABC. The computational results demonstrate that the Modified ABC outperforms the original ABC also produce good solutions when compared with the best-known results in the literature. Computational investigations show that the proposed algorithm is a good and promising approach for the VRPTW.

Aerosol-Cloud-Precipitation Interactions over Indo-Gangetic Basin

NASA Technical Reports Server (NTRS)

Tsay, S.-C.; Lau, K. .; Holben, B. N.; Hsu, N. C.; Bhartia, P. K.

2005-01-01

About 60% of world population reside in Asia, in term of which sheer population density presents a major environmental stress. Economic expansion in this region is, in fact, accompanied by increases in bio-fuel burning, industrial pollution, and land cover and land use changes. With a growth rate of approx. 8%/yr for Indian economy, more than 600 million people from Lahore, Pakistan to Calcutta, India over the Indo-Gangetic Basin have particularly witnessed increased frequencies of floods and droughts as well as a dramatic increase in atmospheric loading of aerosols (i.e., anthropogenic and natural aerosol) in recent decades. This regional change (e.g., aerosol, cloud, precipitation, etc.) will constitute a vital part of the global change in the 21st century. Better understanding of the impacts of aerosols in affecting monsoon climate and water cycles is crucial in providing the physical basis to improve monsoon climate prediction and for disaster mitigation. Based on climate model simulations, absorbing aerosols (dust and black carbon) play a critical role in affecting interannual and intraseasonal variability of the Indian monsoon. An initiative on the integrated (aerosols, clouds, and precipitation) measurements approach over the Indo-Gangetic Basin will be discussed. An array of ground-based (e.g., AERONET, MPLNET, SMART-COMMIT, etc.) and satellite (e.g., Terra, A-Train, etc.) sensors will be utilized to acquire aerosol characteristics, sources/sinks, and transport processes during the pre-monsoon (April-May, aerosol forcing) season, and to obtain cloud and precipitation properties during the monsoon (May-June, water cycle response) season. Close collaboration with other international programs, such as ABC, CLIVAR, GEWEX, and CEOP in the region is anticipated.

Object Detection Based on Template Matching through Use of Best-So-Far ABC

PubMed Central

2014-01-01

Best-so-far ABC is a modified version of the artificial bee colony (ABC) algorithm used for optimization tasks. This algorithm is one of the swarm intelligence (SI) algorithms proposed in recent literature, in which the results demonstrated that the best-so-far ABC can produce higher quality solutions with faster convergence than either the ordinary ABC or the current state-of-the-art ABC-based algorithm. In this work, we aim to apply the best-so-far ABC-based approach for object detection based on template matching by using the difference between the RGB level histograms corresponding to the target object and the template object as the objective function. Results confirm that the proposed method was successful in both detecting objects and optimizing the time used to reach the solution. PMID:24812556

50 CFR 648.55 - Framework adjustments to management measures.

Code of Federal Regulations, 2014 CFR

2014-10-01

... establish OFL, ABC, ACL, ACT, DAS allocations, rotational area management programs, percentage allocations... measures will be adjusted. (c) OFL, ABC, ACL, ACT, and AMs. The Council shall specify OFL, ABC, ACL, ACT... derive specifications for ABC, ACL, and ACT, as specified in paragraphs (c)(2) through (c)(5) of this...

50 CFR 648.55 - Framework adjustments to management measures.

Code of Federal Regulations, 2013 CFR

2013-10-01

... establish OFL, ABC, ACL, ACT, DAS allocations, rotational area management programs, percentage allocations... measures will be adjusted. (c) OFL, ABC, ACL, ACT, and AMs. The Council shall specify OFL, ABC, ACL, ACT... derive specifications for ABC, ACL, and ACT, as specified in paragraphs (c)(2) through (c)(5) of this...

50 CFR 648.55 - Framework adjustments to management measures.

Code of Federal Regulations, 2012 CFR

2012-10-01

... establish OFL, ABC, ACL, ACT, DAS allocations, rotational area management programs, percentage allocations... measures will be adjusted. (c) OFL, ABC, ACL, ACT, and AMs. The Council shall specify OFL, ABC, ACL, ACT... derive specifications for ABC, ACL, and ACT, as specified in paragraphs (c)(2) through (c)(5) of this...

50 CFR 648.55 - Framework adjustments to management measures.

Code of Federal Regulations, 2011 CFR

2011-10-01

... establish OFL, ABC, ACL, ACT, DAS allocations, rotational area management programs, percentage allocations... measures will be adjusted. (c) OFL, ABC, ACL, ACT, and AMs. The Council shall specify OFL, ABC, ACL, ACT... derive specifications for ABC, ACL, and ACT, as specified in paragraphs (a)(2) through (5) of this...

The Taurus Spitzer Legacy Project

NASA Astrophysics Data System (ADS)

McCabe, Caer-Eve; Padgett, D. L.; Rebull, L.; Noriega-Crespo, A.; Carey, S.; Brooke, T.; Stapelfeldt, K. R.; Fukagawa, M.; Hines, D.; Terebey, S.; Huard, T.; Hillenbrand, L.; Guedel, M.; Audard, M.; Monin, J.; Guieu, S.; Knapp, G.; Evans, N. J., III; Menard, F.; Harvey, P.; Allen, L.; Wolf, S.; Skinner, S.; Strom, S.; Glauser, A.; Saavedra, C.; Koerner, D.; Myers, P.; Shupe, D.; Latter, W.; Grosso, N.; Heyer, M.; Dougados, C.; Bouvier, J.

2009-01-01

Without massive stars and dense stellar clusters, Taurus plays host to a distributed mode of low-mass star formation particularly amenable to observational and theoretical study. In 2005-2007, our team mapped the central 43 square degrees of the main Taurus clouds at wavelengths from 3.6 - 160 microns with the IRAC and MIPS cameras on the Spitzer Space Telescope. Together, these images form the largest contiguous Spitzer map of a single star-forming region (and any region outside the galactic plane). Our Legacy team has generated re-reduced mosaic images and source catalogs, available to the community via the Spitzer Science Center website http://ssc.spitzer.caltech.edu/legacy/all.html . This Spitzer survey is a central and crucial part of a multiwavelength study of the Taurus cloud complex that we have performed using XMM, CFHT, and the SDSS. The seven photometry data points from Spitzer allow us to characterize the circumstellar environment of each object, and, in conjunction with optical and NIR photometry, construct a complete luminosity function for the cloud members that will place constraints on the initial mass function. We present results drawing upon our catalog of several hundred thousand IRAC and thousands of MIPS sources. Initial results from our study of the Taurus clouds include new disks around brown dwarfs, new low luminosity YSO candidates, and new Herbig-Haro objects.

Requirements for Information/Education Programs on Hypothermia.

DTIC Science & Technology

1979-10-23

NY (NBC) WEZF - Burlington, VT (ABC) Bangor, ME: 112,800 WLBZ - Bangor, ME (NBC) WABI - Bangor, ME (CBS) WVII - Bangor, ME (ABC) Presque Isle , ME...28,700 WAGM - Presque Isle , ME CBS(ABC-NBC) A-2 MID-ATLANTIC: 18,885,600 New York, NY: 6,375,500 Raleigh-Durham, NC: 451,800 WCBS - New York, NY (CBS...NY (ABC) WICZ - Binghamton, NY (NBC) WilingonNC: 135,300 WWAY -IWilmington, NC (ABC) WECT - Wilmington, NC NBC (CBS) Erie , PA: 132,600 WICU - Erie , PA

Building Self-Esteem of Children and Adolescents through Adventure-Based Counseling.

ERIC Educational Resources Information Center

Nassar-McMillan, Sylvia C.; Cashwell, Craig S.

1997-01-01

Explores ways in which communities and school counselors can foster self-esteem in children and adolescents through adventure-based counseling (ABC). Discusses the importance of self-esteem, the philosophy and tenets of ABC, the effectiveness of ABC, and ways to integrate ABC concepts into groups. Focuses on prevention and intervention. (RJM)

ABCE1 is essential for S phase progression in human cells

PubMed Central

Toompuu, Marina; Kärblane, Kairi; Pata, Pille; Truve, Erkki; Sarmiento, Cecilia

2016-01-01

ABSTRACT ABCE1 is a highly conserved protein universally present in eukaryotes and archaea, which is crucial for the viability of different organisms. First identified as RNase L inhibitor, ABCE1 is currently recognized as an essential translation factor involved in several stages of eukaryotic translation and ribosome biogenesis. The nature of vital functions of ABCE1, however, remains unexplained. Here, we study the role of ABCE1 in human cell proliferation and its possible connection to translation. We show that ABCE1 depletion by siRNA results in a decreased rate of cell growth due to accumulation of cells in S phase, which is accompanied by inefficient DNA synthesis and reduced histone mRNA and protein levels. We infer that in addition to the role in general translation, ABCE1 is involved in histone biosynthesis and DNA replication and therefore is essential for normal S phase progression. In addition, we analyze whether ABCE1 is implicated in transcript-specific translation via its association with the eIF3 complex subunits known to control the synthesis of cell proliferation-related proteins. The expression levels of a few such targets regulated by eIF3A, however, were not consistently affected by ABCE1 depletion. PMID:26985706

An Enhanced Artificial Bee Colony Algorithm with Solution Acceptance Rule and Probabilistic Multisearch.

PubMed

Yurtkuran, Alkın; Emel, Erdal

2016-01-01

The artificial bee colony (ABC) algorithm is a popular swarm based technique, which is inspired from the intelligent foraging behavior of honeybee swarms. This paper proposes a new variant of ABC algorithm, namely, enhanced ABC with solution acceptance rule and probabilistic multisearch (ABC-SA) to address global optimization problems. A new solution acceptance rule is proposed where, instead of greedy selection between old solution and new candidate solution, worse candidate solutions have a probability to be accepted. Additionally, the acceptance probability of worse candidates is nonlinearly decreased throughout the search process adaptively. Moreover, in order to improve the performance of the ABC and balance the intensification and diversification, a probabilistic multisearch strategy is presented. Three different search equations with distinctive characters are employed using predetermined search probabilities. By implementing a new solution acceptance rule and a probabilistic multisearch approach, the intensification and diversification performance of the ABC algorithm is improved. The proposed algorithm has been tested on well-known benchmark functions of varying dimensions by comparing against novel ABC variants, as well as several recent state-of-the-art algorithms. Computational results show that the proposed ABC-SA outperforms other ABC variants and is superior to state-of-the-art algorithms proposed in the literature.

A novel approach for dimension reduction of microarray.

PubMed

Aziz, Rabia; Verma, C K; Srivastava, Namita

2017-12-01

This paper proposes a new hybrid search technique for feature (gene) selection (FS) using Independent component analysis (ICA) and Artificial Bee Colony (ABC) called ICA+ABC, to select informative genes based on a Naïve Bayes (NB) algorithm. An important trait of this technique is the optimization of ICA feature vector using ABC. ICA+ABC is a hybrid search algorithm that combines the benefits of extraction approach, to reduce the size of data and wrapper approach, to optimize the reduced feature vectors. This hybrid search technique is facilitated by evaluating the performance of ICA+ABC on six standard gene expression datasets of classification. Extensive experiments were conducted to compare the performance of ICA+ABC with the results obtained from recently published Minimum Redundancy Maximum Relevance (mRMR) +ABC algorithm for NB classifier. Also to check the performance that how ICA+ABC works as feature selection with NB classifier, compared the combination of ICA with popular filter techniques and with other similar bio inspired algorithm such as Genetic Algorithm (GA) and Particle Swarm Optimization (PSO). The result shows that ICA+ABC has a significant ability to generate small subsets of genes from the ICA feature vector, that significantly improve the classification accuracy of NB classifier compared to other previously suggested methods. Copyright © 2017 Elsevier Ltd. All rights reserved.

Caenorhabditis elegans ABCRNAi transporters interact genetically with rde-2 and mut-7.

PubMed

Sundaram, Prema; Han, Wang; Cohen, Nancy; Echalier, Benjamin; Albin, John; Timmons, Lisa

2008-02-01

RNA interference (RNAi) mechanisms are conserved and consist of an interrelated network of activities that not only respond to exogenous dsRNA, but also perform endogenous functions required in the fine tuning of gene expression and in maintaining genome integrity. Not surprisingly, RNAi functions have widespread influences on cellular function and organismal development. Previously, we observed a reduced capacity to mount an RNAi response in nine Caenorhabditis elegans mutants that are defective in ABC transporter genes (ABC(RNAi) mutants). Here, we report an exhaustive study of mutants, collectively defective in 49 different ABC transporter genes, that allowed for the categorization of one additional transporter into the ABC(RNAi) gene class. Genetic complementation tests reveal functions for ABC(RNAi) transporters in the mut-7/rde-2 branch of the RNAi pathway. These second-site noncomplementation interactions suggest that ABC(RNAi) proteins and MUT-7/RDE-2 function together in parallel pathways and/or as multiprotein complexes. Like mut-7 and rde-2, some ABC(RNAi) mutants display transposon silencing defects. Finally, our analyses reveal a genetic interaction network of ABC(RNAi) gene function with respect to this part of the RNAi pathway. From our results, we speculate that the coordinated activities of ABC(RNAi) transporters, through their effects on endogenous RNAi-related mechanisms, ultimately affect chromosome function and integrity.

Antitumor effect of the novel sphingosine kinase 2 inhibitor ABC294640 is enhanced by inhibition of autophagy and by sorafenib in human cholangiocarcinoma cells.

PubMed

Ding, Xiwei; Chaiteerakij, Roongruedee; Moser, Catherine D; Shaleh, Hassan; Boakye, Jeffrey; Chen, Gang; Ndzengue, Albert; Li, Ying; Zhou, Yanling; Huang, Shengbing; Sinicrope, Frank A; Zou, Xiaoping; Thomas, Melanie B; Smith, Charles D; Roberts, Lewis R

2016-04-12

Sphingosine kinase 2 (Sphk2) has an oncogenic role in cancer. A recently developed first-in-class Sphk2 specific inhibitor ABC294640 displays antitumor activity in many cancer models. However, the role of Sphk2 and the antitumor activity of its inhibitor ABC294640 are not known in cholangiocarcinoma. We investigated the potential of targeting Sphk2 for the treatment of cholangiocarcinoma. We found that Sphk2 is overexpressed in five established human cholangiocarcinoma cell lines (WITT, HuCCT1, EGI-1, OZ and HuH28) and a new patient-derived cholangiocarcinoma cell line (LIV27) compared to H69 normal cholangiocytes. Inhibition of Sphk2 by ABC294640 inhibited proliferation and induced caspase-dependent apoptosis. Furthermore, we found that ABC294640 inhibited STAT3 phosphorylation, one of the key signaling pathways regulating cholangiocarcinoma cell proliferation and survival. ABC294640 also induced autophagy. Inhibition of autophagy by bafilomycin A1 or chloroquine potentiated ABC294640-induced cytotoxicity and apoptosis. In addition, ABC294640 in combination with sorafenib synergistically inhibited cell proliferation of cholangiocarcinoma cells. Strong decreases in STAT3 phosphorylation were observed in WITT and HuCCT1 cells exposed to the ABC294640 and sorafenib combination. These findings provide novel evidence that Sphk2 may be a rational therapeutic target in cholangiocarcinoma. Combinations of ABC294640 with sorafenib and/or autophagy inhibitors may provide novel strategies for the treatment of cholangiocarcinoma.

A novel artificial bee colony algorithm based on modified search equation and orthogonal learning.

PubMed

Gao, Wei-feng; Liu, San-yang; Huang, Ling-ling

2013-06-01

The artificial bee colony (ABC) algorithm is a relatively new optimization technique which has been shown to be competitive to other population-based algorithms. However, ABC has an insufficiency regarding its solution search equation, which is good at exploration but poor at exploitation. To address this concerning issue, we first propose an improved ABC method called as CABC where a modified search equation is applied to generate a candidate solution to improve the search ability of ABC. Furthermore, we use the orthogonal experimental design (OED) to form an orthogonal learning (OL) strategy for variant ABCs to discover more useful information from the search experiences. Owing to OED's good character of sampling a small number of well representative combinations for testing, the OL strategy can construct a more promising and efficient candidate solution. In this paper, the OL strategy is applied to three versions of ABC, i.e., the standard ABC, global-best-guided ABC (GABC), and CABC, which yields OABC, OGABC, and OCABC, respectively. The experimental results on a set of 22 benchmark functions demonstrate the effectiveness and efficiency of the modified search equation and the OL strategy. The comparisons with some other ABCs and several state-of-the-art algorithms show that the proposed algorithms significantly improve the performance of ABC. Moreover, OCABC offers the highest solution quality, fastest global convergence, and strongest robustness among all the contenders on almost all the test functions.

Expression, purification and characterization of GAPDH-ChSase ABC I from Proteus vulgaris in Escherichia coli.

PubMed

Li, Ye; Chen, Zhenya; Zhou, Zhao; Yuan, Qipeng

2016-12-01

Chondroitinases (ChSases) are a family of polysaccharide lyases that can depolymerize high molecular weight chondroitin sulfate (CS) and dermatan sulfate (DS). In this study, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is stably expressed in different cells like normal cells and cancer cells and the expression is relatively insensitive to experimental conditions, was expressed as a fusion protein with ChSase ABC I. Results showed that the expression level and enzyme activity of GAPDH-ChSase ABC I were about 2.2 and 3.0 times higher than those of ChSase ABC I. By optimization of fermentation conditions, higher productivity of ChSase ABC I was achieved as 880 ± 61 IU/g wet cell weight compared with the reported ones. The optimal temperature and pH of GAPDH-ChSase ABC I were 40 °C and 7.5, respectively. GAPDH-ChSase ABC I had a kcat/Km of 131 ± 4.1 L/μmol s and the catalytic efficiency was decreased as compared to ChSase ABC I. The relative activity of GAPDH-ChSase ABC I remained 89% after being incubated at 30 °C for 180 min and the thermostability of ChSase ABC I was enhanced by GAPDH when it was incubated at 30, 35, 40 and 45 °C. Copyright © 2016 Elsevier Inc. All rights reserved.

Application of activity-based costing (ABC) for a Peruvian NGO healthcare provider.

PubMed

Waters, H; Abdallah, H; Santillán, D

2001-01-01

This article describes the application of activity-based costing (ABC) to calculate the unit costs of the services for a health care provider in Peru. While traditional costing allocates overhead and indirect costs in proportion to production volume or to direct costs, ABC assigns costs through activities within an organization. ABC uses personnel interviews to determine principal activities and the distribution of individual's time among these activities. Indirect costs are linked to services through time allocation and other tracing methods, and the result is a more accurate estimate of unit costs. The study concludes that applying ABC in a developing country setting is feasible, yielding results that are directly applicable to pricing and management. ABC determines costs for individual clinics, departments and services according to the activities that originate these costs, showing where an organization spends its money. With this information, it is possible to identify services that are generating extra revenue and those operating at a loss, and to calculate cross subsidies across services. ABC also highlights areas in the health care process where efficiency improvements are possible. Conclusions about the ultimate impact of the methodology are not drawn here, since the study was not repeated and changes in utilization patterns and the addition of new clinics affected applicability of the results. A potential constraint to implementing ABC is the availability and organization of cost information. Applying ABC efficiently requires information to be readily available, by cost category and department, since the greatest benefits of ABC come from frequent, systematic application of the methodology in order to monitor efficiency and provide feedback for management. The article concludes with a discussion of the potential applications of ABC in the health sector in developing countries.

Abacavir induces platelet-endothelium interactions by interfering with purinergic signalling: A step from inflammation to thrombosis.

PubMed

Alvarez, Angeles; Rios-Navarro, Cesar; Blanch-Ruiz, Maria Amparo; Collado-Diaz, Victor; Andujar, Isabel; Martinez-Cuesta, Maria Angeles; Orden, Samuel; Esplugues, Juan V

2017-05-01

The controversy connecting Abacavir (ABC) with cardiovascular disease has been fuelled by the lack of a credible mechanism of action. ABC shares structural similarities with endogenous purines, signalling molecules capable of triggering prothrombotic/proinflammatory programmes. Platelets are leading actors in the process of thrombosis. Our study addresses the effects of ABC on interactions between platelets and other vascular cells, while exploring the adhesion molecules implicated and the potential interference with the purinergic signalling pathway. The effects of ABC on platelet aggregation and platelet-endothelium interactions were evaluated, respectively, with an aggregometer and a flow chamber system that reproduced conditions in vivo. The role of adhesion molecules and purinergic receptors in endothelial and platelet populations was assessed by selective pre-incubation with specific antagonists and antibodies. ABC and carbovir triphosphate (CBT) levels were evaluated by HPLC. The results showed that ABC promoted the adherence of platelets to endothelial cells, a crucial step for the formation of thrombi. This was not a consequence of a direct effect of ABC on platelets, but resulted from activation of the endothelium via purinergic ATP-P2X 7 receptors, which subsequently triggered an interplay between P-selectin and ICAM-1 on endothelial cells with constitutively expressed GPIIb/IIIa and GPIbα on platelets. ABC did not induce platelet activation (P-selectin expression or Ca 2+ mobilization) or aggregation, even at high concentrations. CBT levels in endothelial cells were lower than those required to induce platelet-endothelium interactions. Thus, ABC interference with endothelial purinergic signalling leads to platelet recruitment. This highlights the endothelium as the main cell target of ABC in this interaction, which is in line with previous experimental evidence that ABC induces manifestations of vascular inflammation. Copyright © 2017 Elsevier B.V. All rights reserved.

SU-E-T-401: Feasibility Study of Using ABC to Gate Lung SBRT Treatment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cao, D; Xie, X; Shepard, D

2014-06-01

Purpose: The current SBRT treatment techniques include free breathing (FB) SBRT and gated FB SBRT. Gated FB SBRT has smaller target and less lung toxicity with longer treatment time. The recent development of direct connectivity between the ABC and linac allowing for automated beam gating. In this study, we have examined the feasibility of using ABC system to gate the lung SBRT treatment. Methods: A CIRS lung phantom with a 3cm sphere-insert and a moving chest plate was used in this study. Sinusoidal motion was used for the FB pattern. An ABC signal was imported to simulate breath holds. 4D-CTmore » was taken in FB mode and average-intensity-projection (AIP) was used to create FB and 50% gated FB SBRT planning CT. A manually gated 3D CT scan was acquired for ABC gated SBRT planning.An SBRT plan was created for each treatment option. A surface-mapping system was used for 50% gating and ABC system was used for ABC gating. A manually gated CBCT scan was also performed to verify setup. Results: Among three options, the ABC gated plan has the smallest PTV of 35.94cc, which is 35% smaller comparing to that of the FB plan. Consequently, the V20 of the left lung reduced by 15% and 23% comparing to the 50% gated FB and FB plans, respectively. The FB plan took 4.7 minutes to deliver, while the 50% gated FB plan took 18.5 minutes. The ABC gated plan delivery took only 10.6 minutes. A stationary target with 3cm diameter was also obtained from the manually gated CBCT scan. Conclusion: A strategy for ABC gated lung SBRT was developed. ABC gating can significantly reduce the lung toxicity while maintaining the target coverage. Comparing to the 50% gated FB SBRT, ABC gated treatment can also provide less lung toxicity as well as improved delivery efficiency. This research is funded by Elekta.« less

ABC transporters are involved in defense against permethrin insecticide in the malaria vector Anopheles stephensi.

PubMed

Epis, Sara; Porretta, Daniele; Mastrantonio, Valentina; Comandatore, Francesco; Sassera, Davide; Rossi, Paolo; Cafarchia, Claudia; Otranto, Domenico; Favia, Guido; Genchi, Claudio; Bandi, Claudio; Urbanelli, Sandra

2014-07-29

Proteins from the ABC family (ATP-binding cassette) represent the largest known group of efflux pumps, responsible for transporting specific molecules across lipid membranes in both prokaryotic and eukaryotic organisms. In arthropods they have been shown to play a role in insecticide defense/resistance. The presence of ABC transporters and their possible association with insecticide transport have not yet been investigated in the mosquito Anopheles stephensi, the major vector of human malaria in the Middle East and South Asian regions. Here we investigated the presence and role of ABCs in transport of permethrin insecticide in a susceptible strain of this mosquito species. To identify ABC transporter genes we obtained a transcriptome from untreated larvae of An. stephensi and then compared it with the annotated transcriptome of Anopheles gambiae. To analyse the association between ABC transporters and permethrin we conducted bioassays with permethrin alone and in combination with an ABC inhibitor, and then we investigated expression profiles of the identified genes in larvae exposed to permethrin. Bioassays showed an increased mortality of mosquitoes when permethrin was used in combination with the ABC-transporter inhibitor. Genes for ABC transporters were detected in the transcriptome, and five were selected (AnstABCB2, AnstABCB3, AnstABCB4, AnstABCmember6 and AnstABCG4). An increased expression in one of them (AnstABCG4) was observed in larvae exposed to the LD50 dose of permethrin. Contrary to what was found in other insect species, no up-regulation was observed in the AnstABCB genes. Our results show for the first time the involvement of ABC transporters in larval defense against permethrin in An. stephensi and, more in general, confirm the role of ABC transporters in insecticide defense. The differences observed with previous studies highlight the need of further research as, despite the growing number of studies on ABC transporters in insects, the heterogeneity of the results available at present does not allow us to infer general trends in ABC transporter-insecticide interactions.

Directly Imaged L-T Transition Exoplanets in the Mid-infrared

NASA Astrophysics Data System (ADS)

Skemer, Andrew J.; Marley, Mark S.; Hinz, Philip M.; Morzinski, Katie M.; Skrutskie, Michael F.; Leisenring, Jarron M.; Close, Laird M.; Saumon, Didier; Bailey, Vanessa P.; Briguglio, Runa; Defrere, Denis; Esposito, Simone; Follette, Katherine B.; Hill, John M.; Males, Jared R.; Puglisi, Alfio; Rodigas, Timothy J.; Xompero, Marco

2014-09-01

Gas-giant planets emit a large fraction of their light in the mid-infrared (gsim3 μm), where photometry and spectroscopy are critical to our understanding of the bulk properties of extrasolar planets. Of particular importance are the L- and M-band atmospheric windows (3-5 μm), which are the longest wavelengths currently accessible to ground-based, high-contrast imagers. We present binocular LBT adaptive optics (AO) images of the HR 8799 planetary system in six narrow-band filters from 3 to 4 μm, and a Magellan AO image of the 2M1207 planetary system in a broader 3.3 μm band. These systems encompass the five known exoplanets with luminosities consistent with L → T transition brown dwarfs. Our results show that the exoplanets are brighter and have shallower spectral slopes than equivalent temperature brown dwarfs in a wavelength range that contains the methane fundamental absorption feature (spanned by the narrow-band filters and encompassed by the broader 3.3 μm filter). For 2M1207 b, we find that thick clouds and non-equilibrium chemistry caused by vertical mixing can explain the object's appearance. For the HR 8799 planets, we present new models that suggest the atmospheres must have patchy clouds, along with non-equilibrium chemistry. Together, the presence of a heterogeneous surface and vertical mixing presents a picture of dynamic planetary atmospheres in which both horizontal and vertical motions influence the chemical and condensate profiles.

Floods in Northeast India and Bangladesh

NASA Technical Reports Server (NTRS)

2002-01-01

For the past two weeks floods have ravaged Bangladesh (center) and eastern India (draped around Bangladesh to the north), killing over 50 people and displacing hundreds of thousands from their homes. These false-color images acquired on July 15 and 16, 2002, by the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Terra satellite show some of the worst flooding. The dark brown, swollen river in the images (top right on July 16; center on July 15) is the Brahmaputra River, which flows through the middle of the Indian state of Assam at the foothills of the Himalaya Mountains. A large, black area south of the Brahmaputra (partially obscured by clouds) shows flooded areas in Bangladesh. Floods of this magnitude have been known to occur in southern Bangladesh and are caused by storms washing seawater over coastal regions. This year, however, unrelenting torrential rains across the entire eastern sub-continent gave rise to the deluge. The massive amounts of rainwater that fell on Nepal and Assam drained into an already waterlogged eastern Bangladesh. Normally, the Brahmaputra River and its tributaries would resemble a tangle of thin lines, and the large black patches in Bangladesh would be the color of the rest of the land surface, tan. In these false-color images, land is tan, and clouds are pink and white. Water comes across as black or dark brown, depending on its sediment level, with clearer water being closer to black. Credit: Jacques Descloitres, MODIS Land Rapid Response Team, NASA/GSFC

Cloudless Atmospheres for L/T Dwarfs and Extrasolar Giant Planets

NASA Technical Reports Server (NTRS)

Tremblin, P.; Amundsen, D. S.; Chabrier, G.; Baraffe, I.; Drummond, B.; Hinkley, S.; Mourier, P.; Venot, O.

2016-01-01

The admitted, conventional scenario to explain the complex spectral evolution of brown dwarfs (BDs) since their first detection 20 years ago has always been the key role played by micron-size condensates, called "dust" or "clouds," in their atmosphere. This scenario, however, faces major problems, in particular the J-band brightening and the resurgence of FeH absorption at the L to T transition, and a physical first-principle understanding of this transition is lacking. In this Letter, we propose a new, completely different explanation for BD and extrasolar giant planet (EGP) spectral evolution, without the need to invoke clouds. We show that, due to the slowness of the CO/ CH4 and N2/NH3 chemical reactions, brown dwarf (L and T, respectively) and EGP atmospheres are subject to a thermo-chemical instability similar in nature to the fingering or chemical convective instability present in Earth oceans and at the Earth core/mantle boundary. The induced small-scale turbulent energy transport reduces the temperature gradient in the atmosphere, explaining the observed increase in near-infrared J-H and J-K colors of L dwarfs and hot EGPs, while a warming up of the deep atmosphere along the L to T transition, as the CO/CH4 instability vanishes, naturally solves the two aforementioned puzzles, and provides a physical explanation of the L to T transition. This new picture leads to a drastic revision of our understanding of BD and EGP atmospheres and their evolution.

Directly imaged L-T transition exoplanets in the mid-infrared {sup ,}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skemer, Andrew J.; Hinz, Philip M.; Morzinski, Katie M.

2014-09-01

Gas-giant planets emit a large fraction of their light in the mid-infrared (≳3 μm), where photometry and spectroscopy are critical to our understanding of the bulk properties of extrasolar planets. Of particular importance are the L- and M-band atmospheric windows (3-5 μm), which are the longest wavelengths currently accessible to ground-based, high-contrast imagers. We present binocular LBT adaptive optics (AO) images of the HR 8799 planetary system in six narrow-band filters from 3 to 4 μm, and a Magellan AO image of the 2M1207 planetary system in a broader 3.3 μm band. These systems encompass the five known exoplanets withmore » luminosities consistent with L → T transition brown dwarfs. Our results show that the exoplanets are brighter and have shallower spectral slopes than equivalent temperature brown dwarfs in a wavelength range that contains the methane fundamental absorption feature (spanned by the narrow-band filters and encompassed by the broader 3.3 μm filter). For 2M1207 b, we find that thick clouds and non-equilibrium chemistry caused by vertical mixing can explain the object's appearance. For the HR 8799 planets, we present new models that suggest the atmospheres must have patchy clouds, along with non-equilibrium chemistry. Together, the presence of a heterogeneous surface and vertical mixing presents a picture of dynamic planetary atmospheres in which both horizontal and vertical motions influence the chemical and condensate profiles.« less

Hubble Tracks Jupiter Storms

NASA Technical Reports Server (NTRS)

1995-01-01

NASA's Hubble Space Telescope is following dramatic and rapid changes in Jupiter's turbulent atmosphere that will be critical for targeting observations made by the Galileo space probe when it arrives at the giant planet later this year.

This Hubble image provides a detailed look at a unique cluster of three white oval-shaped storms that lie southwest (below and to the left) of Jupiter's Great Red Spot. The appearance of the clouds, as imaged on February 13, 1995 is considerably different from their appearance only seven months earlier. Hubble shows these features moving closer together as the Great Red Spot is carried westward by the prevailing winds while the white ovals are swept eastward. (This change in appearance is not an effect of last July's comet Shoemaker-Levy 9 collisions with Jupiter.)

The outer two of the white storms formed in the late 1930s. In the centers of these cloud systems the air is rising, carrying fresh ammonia gas upward. New, white ice crystals form when the upwelling gas freezes as it reaches the chilly cloud top level where temperatures are -200 degrees Fahrenheit (- 130 degrees Centigrade).

The intervening white storm center, the ropy structure to the left of the ovals, and the small brown spot have formed in low pressure cells. The white clouds sit above locations where gas is descending to lower, warmer regions. The extent of melting of the white ice exposes varied amounts of Jupiter's ubiquitous brown haze. The stronger the down flow, the less ice, and the browner the region.

A scheduled series of Hubble observations will help target regions of interest for detailed scrutiny by the Galileo spacecraft, which will arrive at Jupiter in early December 1995. Hubble will provide a global view of Jupiter while Galileo will obtain close-up images of structure of the clouds that make up the large storm systems such as the Great Red Spot and white ovals that are seen in this picture.

This color picture is assembled from a series of images taken by the Wide Field Planetary Camera 2, in planetary camera mode, when Jupiter was at a distance of 519 million miles (961 million kilometers) from Earth. These images are part of a set of data obtained by a Hubble Space Telescope (HST) team headed by Reta Beebe of New Mexico State University.

This image and other images and data received from the Hubble Space Telescope are posted on the World Wide Web on the Space Telescope Science Institute home page at URL http://oposite.stsci.edu/pubinfo/

Strong brightness variations signal cloudy-to-clear transition of brown dwarfs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Radigan, Jacqueline; Lafrenière, David; Artigau, Etienne

2014-10-01

We report the results of a J-band search for cloud-related variability in the atmospheres of 62 L4-T9 dwarfs using the Du Pont 2.5 m telescope at Las Campanas Observatory and the Canada-France-Hawaii Telescope on Mauna Kea. We find 9 of 57 objects included in our final analysis to be significantly variable with >99% confidence, 5 of which are new discoveries. In our study, strong signals (peak-to-peak amplitudes >2%) are confined to the L/T transition (4/16 objects with L9-T3.5 spectral types and 0/41 objects for all other spectral types). The probability that the observed occurrence rates for strong variability inside andmore » outside the L/T transition originate from the same underlying true occurrence rate is excluded at >99.7% confidence. Based on a careful assessment of our sensitivity to astrophysical signals, we infer that 39{sub −14}{sup +16}% of L9-T3.5 dwarfs are strong variables on rotational timescales. If we consider only L9-T3.5 dwarfs with 0.8 < J – K {sub s} < 1.5, and assume an isotropic distribution of spin axes for our targets, we find that 80{sub −19}{sup +18}% would be strong variables if viewed edge-on; azimuthal symmetry and/or binarity may account for non-variable objects in this group. These observations suggest that the settling of condensate clouds below the photosphere in brown dwarf (BD) atmospheres does not occur in a spatially uniform manner. Rather, the formation and sedimentation of dust grains at the L/T transition is coupled to atmospheric dynamics, resulting in highly contrasting regions of thick and thin clouds and/or clearings. Outside the L/T transition we identify five weak variables (peak-to-peak amplitudes of 0.6%-1.6%). Excluding L9-T3.5 spectral types, we infer that 60{sub −18}{sup +22}% of targets vary with amplitudes of 0.5%-1.6%, suggesting that surface heterogeneities are common among L and T dwarfs. Our survey establishes a significant link between strong variability and L/T transition spectral types, providing evidence in support of the hypothesis that cloud holes contribute to the abrupt decline in condensate opacity and 1 μm brightening observed in this regime. More generally, fractional cloud coverage is an important model parameter for BDs and giant planets, especially those with L/T transition spectral types and colors.« less

Risperidone dosing in children and adolescents with autistic disorder: a double-blind, placebo-controlled study.

PubMed

Kent, Justine M; Kushner, Stuart; Ning, Xiaoping; Karcher, Keith; Ness, Seth; Aman, Michael; Singh, Jaskaran; Hough, David

2013-08-01

Efficacy and safety of 2 risperidone doses were evaluated in children and adolescents with autism. Patients (N = 96; 5-17 years), received risperidone (low-dose: 0.125 mg/day [20 to <45 kg], 0.175 mg/day [>45 kg] or high-dose: 1.25 mg/day [20 to <45 kg], 1.75 mg/day [>45 kg]) or placebo. Mean baseline (range 27-29) to endpoint change in Aberrant Behavior Checklist-Irritability (primary endpoint) was significantly greater in the high-dose-(-12.4 [6.5]; p < 0.001), but not low-dose (-7.4 [8.1]; p = 0.164) group, versus placebo (-3.5 [10.7]). Clinical Global Impressions-Severity and Children's Yale-Brown Obsessive Compulsive Scale scores improved significantly only in the high-dose group, consistent with ABC-I results. Somnolence, sedation and increased appetite occurred more frequently in high-versus low-dose groups. Overall, increased appetite occurred most frequently.

Volume Quantification of Acute Infratentorial Hemorrhage with Computed Tomography: Validation of the Formula 1/2ABC and 2/3SH

PubMed Central

Zhang, Yunyun; Yan, Jing; Fu, Yi; Chen, Shengdi

2013-01-01

Objective To compare the accuracy of formula 1/2ABC with 2/3SH on volume estimation for hypertensive infratentorial hematoma. Methods One hundred and forty-seven CT scans diagnosed as hypertensive infratentorial hemorrhage were reviewed. Based on the shape, hematomas were categorized as regular or irregular. Multilobular was defined as a special shape of irregular. Hematoma volume was calculated employing computer-assisted volumetric analysis (CAVA), 1/2ABC and 2/3SH, respectively. Results The correlation coefficients between 1/2ABC (or 2/3SH) and CAVA were greater than 0.900 in all subgroups. There were neither significant differences in absolute values of volume deviation nor percentage deviation between 1/2ABC and 2/3SH for regular hemorrhage (P>0.05). While for cerebellar, brainstem and irregular hemorrhages, the absolute values of volume deviation and percentage deviation by formula 1/2ABC were greater than 2/3SH (P<0.05). 1/2ABC and 2/3SH underestimated hematoma volume each by 10% and 5% for cerebellar hemorrhage, 14% and 9% for brainstem hemorrhage, 19% and 16% for regular hemorrhage, 9% and 3% for irregular hemorrhage, respectively. In addition, for the multilobular hemorrhage, 1/2ABC underestimated the volume by 9% while 2/3SH overestimated it by 2%. Conclusions For regular hemorrhage volume calculation, the accuracy of 2/3SH is similar to 1/2ABC. While for cerebellar, brainstem or irregular hemorrhages (including multilobular), 2/3SH is more accurate than 1/2ABC. PMID:23638025

ABC versus CAB for cardiopulmonary resuscitation: a prospective, randomized simulator-based trial.

PubMed

Marsch, Stephan; Tschan, Franziska; Semmer, Norbert K; Zobrist, Roger; Hunziker, Patrick R; Hunziker, Sabina

2013-09-06

After years of advocating ABC (Airway-Breathing-Circulation), current guidelines of cardiopulmonary resuscitation (CPR) recommend CAB (Circulation-Airway-Breathing). This trial compared ABC with CAB as initial approach to CPR from the arrival of rescuers until the completion of the first resuscitation cycle. 108 teams, consisting of two physicians each, were randomized to receive a graphical display of either the ABC algorithm or the CAB algorithm. Subsequently teams had to treat a simulated cardiac arrest. Data analysis was performed using video recordings obtained during simulations. The primary endpoint was the time to completion of the first resuscitation cycle of 30 compressions and two ventilations. The time to execution of the first resuscitation measure was 32 ± 12 seconds in ABC teams and 25 ± 10 seconds in CAB teams (P = 0.002). 18/53 ABC teams (34%) and none of the 55 CAB teams (P = 0.006) applied more than the recommended two initial rescue breaths which caused a longer duration of the first cycle of 30 compressions and two ventilations in ABC teams (31 ± 13 vs.23 ± 6 sec; P = 0.001). Overall, the time to completion of the first resuscitation cycle was longer in ABC teams (63 ± 17 vs. 48 ± 10 sec; P <0.0001). This randomized controlled trial found CAB superior to ABC with an earlier start of CPR and a shorter time to completion of the first 30:2 resuscitation cycle. These findings endorse the change from ABC to CAB in international resuscitation guidelines.

Diagnosing and discriminating between primary and secondary aneurysmal bone cysts

PubMed Central

Sasaki, Hiromi; Nagano, Satoshi; Shimada, Hirofumi; Yokouchi, Masahiro; Setoguchi, Takao; Ishidou, Yasuhiro; Kunigou, Osamu; Maehara, Kosuke; Komiya, Setsuro

2017-01-01

Aneurysmal bone cysts (ABCs) are benign bony lesions frequently accompanied by multiple cystic lesions and aggressive bone destruction. They are relatively rare lesions, representing only 1% of bone tumors. The pathogenesis of ABCs has yet to be elucidated. In the present study, a series of 22 cases of primary and secondary ABC from patients treated in Department of Orthopedic Surgery, Kagoshima University Hospital (Kagoshima, Japan) from 2001–2015 were retrospectively analyzed. The average age at the time of diagnosis of primary ABC was 17.9 years. Intralesional curettage and artificial bone grafting were performed in the majority of the patients with primary ABC. The local recurrence rate following curettage for primary ABC was 18%, and the cause of local recurrence was considered to be insufficient curettage. Although no adjuvant therapy was administered during the surgeries, it may assist the prevention of local recurrence in certain cases. The cases of secondary ABC were preceded by benign bone tumors, including fibrous dysplasia, giant cell tumors, chondroblastoma and non-ossifying fibroma. The features of the secondary ABC typically reflected those of the preceding bone tumor. In the majority of cases, distinguishing the primary ABC from the secondary ABC was possible based on characteristic features, including age of the patient at diagnosis and the tumor location. In cases that exhibit ambiguous features, including a soft tissue mass or a thick septal enhancement on the preoperative magnetic resonance images, a biopsy must be obtained in order to exclude other types of aggressive bone tumors, including giant cell tumor, osteosarcoma and telangiectatic osteosarcoma. PMID:28454393

Anticipated Benefits of Care (ABC): psychometrics and predictive value in psychiatric disorders.

PubMed

Warden, D; Trivedi, M H; Carmody, T J; Gollan, J K; Kashner, T M; Lind, L; Crismon, M L; Rush, A J

2010-06-01

Attitudes and expectations about treatment have been associated with symptomatic outcomes, adherence and utilization in patients with psychiatric disorders. No measure of patients' anticipated benefits of treatment on domains of everyday functioning has previously been available. The Anticipated Benefits of Care (ABC) is a new, 10-item questionnaire used to measure patient expectations about the impact of treatment on domains of everyday functioning. The ABC was collected at baseline in adult out-patients with major depressive disorder (MDD) (n=528), bipolar disorder (n=395) and schizophrenia (n=447) in the Texas Medication Algorithm Project (TMAP). Psychometric properties of the ABC were assessed, and the association of ABC scores with treatment response at 3 months was evaluated. Evaluation of the ABC's internal consistency yielded Cronbach's alpha of 0.90-0.92 for patients across disorders. Factor analysis showed that the ABC was unidimensional for all patients and for patients with each disorder. For patients with MDD, lower anticipated benefits of treatment was associated with less symptom improvement and lower odds of treatment response [odds ratio (OR) 0.72, 95% confidence interval (CI) 0.57-0.87, p=0.0011]. There was no association between ABC and symptom improvement or treatment response for patients with bipolar disorder or schizophrenia, possibly because these patients had modest benefits with treatment. The ABC is the first self-report that measures patient expectations about the benefits of treatment on everyday functioning, filling an important gap in available assessments of attitudes and expectations about treatment. The ABC is simple, easy to use, and has acceptable psychometric properties for use in research or clinical settings.

mRMR-ABC: A Hybrid Gene Selection Algorithm for Cancer Classification Using Microarray Gene Expression Profiling

PubMed Central

Alshamlan, Hala; Badr, Ghada; Alohali, Yousef

2015-01-01

An artificial bee colony (ABC) is a relatively recent swarm intelligence optimization approach. In this paper, we propose the first attempt at applying ABC algorithm in analyzing a microarray gene expression profile. In addition, we propose an innovative feature selection algorithm, minimum redundancy maximum relevance (mRMR), and combine it with an ABC algorithm, mRMR-ABC, to select informative genes from microarray profile. The new approach is based on a support vector machine (SVM) algorithm to measure the classification accuracy for selected genes. We evaluate the performance of the proposed mRMR-ABC algorithm by conducting extensive experiments on six binary and multiclass gene expression microarray datasets. Furthermore, we compare our proposed mRMR-ABC algorithm with previously known techniques. We reimplemented two of these techniques for the sake of a fair comparison using the same parameters. These two techniques are mRMR when combined with a genetic algorithm (mRMR-GA) and mRMR when combined with a particle swarm optimization algorithm (mRMR-PSO). The experimental results prove that the proposed mRMR-ABC algorithm achieves accurate classification performance using small number of predictive genes when tested using both datasets and compared to previously suggested methods. This shows that mRMR-ABC is a promising approach for solving gene selection and cancer classification problems. PMID:25961028

mRMR-ABC: A Hybrid Gene Selection Algorithm for Cancer Classification Using Microarray Gene Expression Profiling.

PubMed

Alshamlan, Hala; Badr, Ghada; Alohali, Yousef

2015-01-01

An artificial bee colony (ABC) is a relatively recent swarm intelligence optimization approach. In this paper, we propose the first attempt at applying ABC algorithm in analyzing a microarray gene expression profile. In addition, we propose an innovative feature selection algorithm, minimum redundancy maximum relevance (mRMR), and combine it with an ABC algorithm, mRMR-ABC, to select informative genes from microarray profile. The new approach is based on a support vector machine (SVM) algorithm to measure the classification accuracy for selected genes. We evaluate the performance of the proposed mRMR-ABC algorithm by conducting extensive experiments on six binary and multiclass gene expression microarray datasets. Furthermore, we compare our proposed mRMR-ABC algorithm with previously known techniques. We reimplemented two of these techniques for the sake of a fair comparison using the same parameters. These two techniques are mRMR when combined with a genetic algorithm (mRMR-GA) and mRMR when combined with a particle swarm optimization algorithm (mRMR-PSO). The experimental results prove that the proposed mRMR-ABC algorithm achieves accurate classification performance using small number of predictive genes when tested using both datasets and compared to previously suggested methods. This shows that mRMR-ABC is a promising approach for solving gene selection and cancer classification problems.

Modeling Aerosol Microphysical and Radiative Effects on Clouds and Implications for the Effects of Black and Brown Carbon on Clouds

NASA Astrophysics Data System (ADS)

Ten Hoeve, J. E.; Jacobson, M. Z.

2010-12-01

Satellite observational studies have found an increase in cloud fraction (CF) and cloud optical depth (COD) with increasing aerosol optical depth (AOD) followed by a decreasing CF/COD with increasing AOD at higher AODs over the Amazon Basin. The shape of this curve is similar to that of a boomerang, and thus the effect has been dubbed the "boomerang effect.” The increase in CF/COD with increasing AOD at low AODs is ascribed to the first and second indirect effects and is referred to as a microphysical effect of aerosols on clouds. The decrease in CF/COD at higher AODs is ascribed to enhanced warming of clouds due to absorbing aerosols, either as inclusions in drops or interstitially between drops. This is referred to as a radiative effect. To date, the interaction of the microphysical and radiative effects has not been simulated with a regional or global computer model. Here, we simulate the boomerang effect with the nested global-through-urban climate, air pollution, weather forecast model, GATOR-GCMOM, for the Amazon biomass burning season of 2006. We also compare the model with an extensive set of data, including satellite data from MODIS, TRMM, and CALIPSO, in situ surface observations, upper-air data, and AERONET data. Biomass burning emissions are obtained from the Global Fire Emissions Database (GFEDv2), and are combined with MODIS land cover data along with biomass burning emission factors. A high-resolution domain, nested within three increasingly coarser domains, is employed over the heaviest biomass burning region within the arc of deforestation. Modeled trends in cloud properties with aerosol loading compare well with MODIS observed trends, allowing causation of these observed correlations, including of the boomerang effect, to be determined by model results. The impact of aerosols on various cloud parameters, such as cloud optical thickness, cloud fraction, cloud liquid water/ice content, and precipitation, are shown through differences between simulations that include and exclude biomass burning emissions. This study suggests by cause and effect through numerical modeling that aerosol radiative effects counteract microphysical effects at high AODs, a result previously shown by correlation alone. As such, computer models that exclude treatment of cloud radiative effects are likely to overpredict the indirect effects of aerosols on clouds and underestimate the warming due to aerosols containing black carbon.

75 FR 11991 - ABC & D Recycling, Inc.-Lease and Operation Exemption-a Line of Railroad in Ware, MA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-12

... DEPARTMENT OF TRANSPORTATION Surface Transportation Board [STB Finance Docket No. 35356] ABC & D Recycling, Inc.--Lease and Operation Exemption--a Line of Railroad in Ware, MA ABC & D Recycling, Inc. (ABC & D), a noncarrier, has filed a verified notice of exemption under 49 CFR 1150.31 to lease from O...

EXTRASOLAR STORMS: PRESSURE-DEPENDENT CHANGES IN LIGHT-CURVE PHASE IN BROWN DWARFS FROM SIMULTANEOUS HST AND SPITZER OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Hao; Apai, Dániel; Karalidi, Theodora

We present Spitzer /Infrared Array Camera Ch1 and Ch2 monitoring of six brown dwarfs during eight different epochs over the course of 20 months. For four brown dwarfs, we also obtained simulataneous Hubble Space Telescope ( HST )/WFC3 G141 grism spectra during two epochs and derived light curves in five narrowband filters. Probing different pressure levels in the atmospheres, the multiwavelength light curves of our six targets all exhibit variations, and the shape of the light curves evolves over the timescale of a rotation period, ranging from 1.4 to 13 hr. We compare the shapes of the light curves andmore » estimate the phase shifts between the light curves observed at different wavelengths by comparing the phase of the primary Fourier components. We use state-of-the-art atmosphere models to determine the flux contribution of different pressure layers to the observed flux in each filter. We find that the light curves that probe higher pressures are similar and in phase, but are offset and often different from the light curves that probe lower pressures. The phase differences between the two groups of light curves suggest that the modulations seen at lower and higher pressures may be introduced by different cloud layers.« less

Spitzer Spectroscopy of Low-Mass Dwarfs - Clouds and Chemistry at the Bottom of the IMF

NASA Technical Reports Server (NTRS)

Roellig, Thomas L.

2006-01-01

Brown dwarfs and low-mass stars show evidence of complicated atmospheres, including a variety of molecular species and clouds. Infrared observations are one of the best probes of the physics of these objects, but up until recently these observations have been limited in studies from ground-based telescopes by atmospheric absorption and insufficient sensitivity. With the launch of the Spitzer Space Telescope with its Infrared Spectrograph (IRS) instrument we now have the capability to undertake a systematic study of the atmospheric structure and chemistry in these cool objects. The IRS Dim Suns team has compiled spectra from objects ranging from M1 dwarfs with effective temperatures 3,800K of down to T8 dwarfs with effective temperatures of 700. This talk will present these results and discuss their implications for our understanding of cool dwarf atmospheric physics and structure.

Parameter Estimation for a Pulsating Turbulent Buoyant Jet Using Approximate Bayesian Computation

NASA Astrophysics Data System (ADS)

Christopher, Jason; Wimer, Nicholas; Lapointe, Caelan; Hayden, Torrey; Grooms, Ian; Rieker, Greg; Hamlington, Peter

2017-11-01

Approximate Bayesian Computation (ABC) is a powerful tool that allows sparse experimental or other ``truth'' data to be used for the prediction of unknown parameters, such as flow properties and boundary conditions, in numerical simulations of real-world engineering systems. Here we introduce the ABC approach and then use ABC to predict unknown inflow conditions in simulations of a two-dimensional (2D) turbulent, high-temperature buoyant jet. For this test case, truth data are obtained from a direct numerical simulation (DNS) with known boundary conditions and problem parameters, while the ABC procedure utilizes lower fidelity large eddy simulations. Using spatially-sparse statistics from the 2D buoyant jet DNS, we show that the ABC method provides accurate predictions of true jet inflow parameters. The success of the ABC approach in the present test suggests that ABC is a useful and versatile tool for predicting flow information, such as boundary conditions, that can be difficult to determine experimentally.

ABCE1 Is a Highly Conserved RNA Silencing Suppressor

PubMed Central

Kärblane, Kairi; Gerassimenko, Jelena; Nigul, Lenne; Piirsoo, Alla; Smialowska, Agata; Vinkel, Kadri; Kylsten, Per; Ekwall, Karl; Swoboda, Peter; Truve, Erkki; Sarmiento, Cecilia

2015-01-01

ATP-binding cassette sub-family E member 1 (ABCE1) is a highly conserved protein among eukaryotes and archaea. Recent studies have identified ABCE1 as a ribosome-recycling factor important for translation termination in mammalian cells, yeast and also archaea. Here we report another conserved function of ABCE1. We have previously described AtRLI2, the homolog of ABCE1 in the plant Arabidopsis thaliana, as an endogenous suppressor of RNA silencing. In this study we show that this function is conserved: human ABCE1 is able to suppress RNA silencing in Nicotiana benthamiana plants, in mammalian HEK293 cells and in the worm Caenorhabditis elegans. Using co-immunoprecipitation and mass spectrometry, we found a number of potential ABCE1-interacting proteins that might support its function as an endogenous suppressor of RNA interference. The interactor candidates are associated with epigenetic regulation, transcription, RNA processing and mRNA surveillance. In addition, one of the identified proteins is translin, which together with its binding partner TRAX supports RNA interference. PMID:25659154

First MRI application of an active breathing coordinator

NASA Astrophysics Data System (ADS)

Kaza, E.; Symonds-Tayler, R.; Collins, D. J.; McDonald, F.; McNair, H. A.; Scurr, E.; Koh, D.-M.; Leach, M. O.

2015-02-01

A commercial active breathing coordinator (ABC) device, employed to hold respiration at a specific level for a predefined duration, was successfully adapted for magnetic resonance imaging (MRI) use for the first time. Potential effects of the necessary modifications were assessed and taken into account. Automatic MR acquisition during ABC breath holding was achieved. The feasibility of MR-ABC thoracic and abdominal examinations together with the advantages of imaging in repeated ABC-controlled breath holds were demonstrated on healthy volunteers. Five lung cancer patients were imaged under MR-ABC, visually confirming the very good intra-session reproducibility of organ position in images acquired with the same patient positioning as used for computed tomography (CT). Using identical ABC settings, good MR-CT inter-modality registration was achieved. This demonstrates the value of ABC, since application of T1, T2 and diffusion weighted MR sequences provides a wider range of contrast mechanisms and additional diagnostic information compared to CT, thus improving radiotherapy treatment planning and assessment.

First MRI application of an active breathing coordinator.

PubMed

Kaza, E; Symonds-Tayler, R; Collins, D J; McDonald, F; McNair, H A; Scurr, E; Koh, D-M; Leach, M O

2015-02-21

A commercial active breathing coordinator (ABC) device, employed to hold respiration at a specific level for a predefined duration, was successfully adapted for magnetic resonance imaging (MRI) use for the first time. Potential effects of the necessary modifications were assessed and taken into account. Automatic MR acquisition during ABC breath holding was achieved. The feasibility of MR-ABC thoracic and abdominal examinations together with the advantages of imaging in repeated ABC-controlled breath holds were demonstrated on healthy volunteers. Five lung cancer patients were imaged under MR-ABC, visually confirming the very good intra-session reproducibility of organ position in images acquired with the same patient positioning as used for computed tomography (CT). Using identical ABC settings, good MR-CT inter-modality registration was achieved. This demonstrates the value of ABC, since application of T1, T2 and diffusion weighted MR sequences provides a wider range of contrast mechanisms and additional diagnostic information compared to CT, thus improving radiotherapy treatment planning and assessment.

First MRI application of an active breathing coordinator

PubMed Central

Kaza, E; Symonds-Tayler, R; Collins, D J; McDonald, F; McNair, H A; Scurr, E; Koh, D-M; Leach, M O

2015-01-01

Abstract A commercial active breathing coordinator (ABC) device, employed to hold respiration at a specific level for a predefined duration, was successfully adapted for magnetic resonance imaging (MRI) use for the first time. Potential effects of the necessary modifications were assessed and taken into account. Automatic MR acquisition during ABC breath holding was achieved. The feasibility of MR-ABC thoracic and abdominal examinations together with the advantages of imaging in repeated ABC-controlled breath holds were demonstrated on healthy volunteers. Five lung cancer patients were imaged under MR-ABC, visually confirming the very good intra-session reproducibility of organ position in images acquired with the same patient positioning as used for computed tomography (CT). Using identical ABC settings, good MR-CT inter-modality registration was achieved. This demonstrates the value of ABC, since application of T1, T2 and diffusion weighted MR sequences provides a wider range of contrast mechanisms and additional diagnostic information compared to CT, thus improving radiotherapy treatment planning and assessment. PMID:25633183

The Mannitol Utilization System of the Marine Bacterium Zobellia galactanivorans

PubMed Central

Groisillier, Agnès; Labourel, Aurore; Michel, Gurvan

2014-01-01

Mannitol is a polyol that occurs in a wide range of living organisms, where it fulfills different physiological roles. In particular, mannitol can account for as much as 20 to 30% of the dry weight of brown algae and is likely to be an important source of carbon for marine heterotrophic bacteria. Zobellia galactanivorans (Flavobacteriia) is a model for the study of pathways involved in the degradation of seaweed carbohydrates. Annotation of its genome revealed the presence of genes potentially involved in mannitol catabolism, and we describe here the biochemical characterization of a recombinant mannitol-2-dehydrogenase (M2DH) and a fructokinase (FK). Among the observations, the M2DH of Z. galactanivorans was active as a monomer, did not require metal ions for catalysis, and featured a narrow substrate specificity. The FK characterized was active on fructose and mannose in the presence of a monocation, preferentially K+. Furthermore, the genes coding for these two proteins were adjacent in the genome and were located directly downstream of three loci likely to encode an ATP binding cassette (ABC) transporter complex, suggesting organization into an operon. Gene expression analysis supported this hypothesis and showed the induction of these five genes after culture of Z. galactanivorans in the presence of mannitol as the sole source of carbon. This operon for mannitol catabolism was identified in only 6 genomes of Flavobacteriaceae among the 76 publicly available at the time of the analysis. It is not conserved in all Bacteroidetes; some species contain a predicted mannitol permease instead of a putative ABC transporter complex upstream of M2DH and FK ortholog genes. PMID:25548051

Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology.

PubMed

Lane, Thomas S; Rempe, Caroline S; Davitt, Jack; Staton, Margaret E; Peng, Yanhui; Soltis, Douglas Edward; Melkonian, Michael; Deyholos, Michael; Leebens-Mack, James H; Chase, Mark; Rothfels, Carl J; Stevenson, Dennis; Graham, Sean W; Yu, Jun; Liu, Tao; Pires, J Chris; Edger, Patrick P; Zhang, Yong; Xie, Yinlong; Zhu, Ying; Carpenter, Eric; Wong, Gane Ka-Shu; Stewart, C Neal

2016-05-31

The ATP-binding cassette (ABC) transporter gene superfamily is ubiquitous among extant organisms and prominently represented in plants. ABC transporters act to transport compounds across cellular membranes and are involved in a diverse range of biological processes. Thus, the applicability to biotechnology is vast, including cancer resistance in humans, drug resistance among vertebrates, and herbicide and other xenobiotic resistance in plants. In addition, plants appear to harbor the highest diversity of ABC transporter genes compared with any other group of organisms. This study applied transcriptome analysis to survey the kingdom-wide ABC transporter diversity in plants and suggest biotechnology applications of this diversity. We utilized sequence similarity-based informatics techniques to infer the identity of ABC transporter gene candidates from 1295 phylogenetically-diverse plant transcriptomes. A total of 97,149 putative (approximately 25 % were full-length) ABC transporter gene members were identified; each RNA-Seq library (plant sample) had 88 ± 30 gene members. As expected, simpler organisms, such as algae, had fewer unique members than vascular land plants. Differences were also noted in the richness of certain ABC transporter subfamilies. Land plants had more unique ABCB, ABCC, and ABCG transporter gene members on average (p < 0.005), and green algae, red algae, and bryophytes had significantly more ABCF transporter gene members (p < 0.005). Ferns had significantly fewer ABCA transporter gene members than all other plant groups (p < 0.005). We present a transcriptomic overview of ABC transporter gene members across all major plant groups. An increase in the number of gene family members present in the ABCB, ABCC, and ABCD transporter subfamilies may indicate an expansion of the ABC transporter superfamily among green land plants, which include all crop species. The striking difference between the number of ABCA subfamily transporter gene members between ferns and other plant taxa is surprising and merits further investigation. Discussed is the potential exploitation of ABC transporters in plant biotechnology, with an emphasis on crops.

ABC transporters affect the elimination and toxicity of CdTe quantum dots in liver and kidney cells

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Mingli; Yin, Huancai; Bai, Pengli

This paper aimed to investigate the role of adenosine triphosphate-binding cassette (ABC) transporters on the efflux and the toxicity of nanoparticles in liver and kidney cells. In this study, we synthesized CdTe quantum dots (QDs) that were monodispersed and emitted green fluorescence (maximum peak at 530 nm). Such QDs tended to accumulate in human hepatocellular carcinoma cells (HepG2), human kidney cells 2 (HK-2), and Madin-Darby canine kidney (MDCK) cells, and cause significant toxicity in all the three cell lines. Using specific inhibitors and inducers of P-glycoprotein (Pgp) and multidrug resistance associated proteins (Mrps), the cellular accumulation and subsequent toxicity ofmore » QDs in HepG2 and HK-2 cells were significantly affected, while only slight changes appeared in MDCK cells, corresponding well with the functional expressions of ABC transporters in cells. Moreover, treatment of QDs caused concentration- and time- dependent induction of ABC transporters in HepG2 and HK-2 cells, but such phenomenon was barely found in MDCK cells. Furthermore, the effects of CdTe QDs on ABC transporters were found to be greater than those of CdCl{sub 2} at equivalent concentrations of cadmium, indicating that the effects of QDs should be a combination of free Cd{sup 2+} and specific properties of QDs. Overall, these results indicated a strong dependence between the functional expressions of ABC transporters and the efflux of QDs, which could be an important reason for the modulation of QDs toxicity by ABC transporters. - Highlights: • ABC transporters contributed actively to the cellular efflux of CdTe quantum dots. • ABC transporters affected the cellular toxicity of CdTe quantum dots. • Treatment of CdTe quantum dots induced the gene expression of ABC transporters. • Free Cd{sup 2+} should be partially involved in the effects of QDs on ABC transporters. • Cellular efflux of quantum dots could be an important modulator for its toxicity.« less

Falls and confidence related quality of life outcome measures in an older British cohort

PubMed Central

Parry, S; Steen, N; Galloway, S; Kenny, R; Bond, J

2001-01-01

Falls are common in older subjects and result in loss of confidence and independence. The Falls Efficacy Scale (FES) and the Activities-specific Balance Confidence scale (ABC) were developed in North America to quantify these entities, but contain idiom unfamiliar to an older British population. Neither has been validated in the UK. The FES and the ABC were modified for use within British culture and the internal consistency and test-retest reliability of the modified scales (FES-UK and ABC-UK) assessed. A total of 193 consecutive, ambulant, new, and return patients (n=119; 62%) and their friends and relatives ("visitors", n=74; 38%) were tested on both scales, while the last 60 subjects were retested within one week. Internal reliability was excellent for both scales (Cronbach's alpha 0.97 (FES-UK), and 0.98 (ABC-UK)). Test-retest reliability was good for both scales, though superior for the ABC-UK (intraclass correlation coefficient 0.58 (FES-UK), 0.89 (ABC-UK)). There was evidence to suggest that the ABC-UK was better than the FES-UK at distinguishing between older patients and younger patients (|tABC| = 4.4; |tFES| = 2.3); and between fallers and non-fallers (|tABC| = 8.7; |tFES| = 5.0) where the t statistics are based on the comparison of two independent samples. The ABC-UK and FES-UK are both reliable and valid measures for the assessment of falls and balance related confidence in older adults. However, better test-retest reliability and more robust differentiation of subgroups in whom falls related quality of life would be expected to be different make the ABC-UK the current instrument of choice in assessing this entity in older British subjects.


Keywords: quality of life; falls; elderly; health status measurement PMID:11161077

Active Breathing Control for Hodgkin's Disease in Childhood and Adolescence: Feasibility, Advantages, and Limits

DOE Office of Scientific and Technical Information (OSTI.GOV)

Claude, Line; Malet, Claude Phys.; Pommier, Pascal

2007-04-01

Purpose: The challenge in early Hodgkin's disease (HD) in children is to maintain good survival rates while sparing organs at risk. This study assesses the feasibility of active breathing control (ABC) in children, and compares normal tissue irradiation with and without ABC. Methods and Materials: Between May 2003 and June 2004, seven children with HD with mediastinal involvement, median age 15, were treated by chemotherapy and involved-field radiation therapy. A free-breathing computed tomography simulation scan and one additional scan during deep inspiration using ABC were performed. A comparison between planning treatment with clinical target volume including supraclavicular regions, mediastinum, andmore » hila was performed, both in free breathing and using ABC. Results: For a prescription of 36 Gy, pulmonary dose-volume histograms revealed a mean reduction in lung volume irradiated at more than 20 Gy (V20) and 30 Gy (V30) of 25% and 26%, respectively, using ABC (p = 0.016). The mean volume of heart irradiated at 30 Gy or more decreased from 15% to 12% (nonsignificant). The mean dose delivered to breasts in girls was small in both situations (less than 2 Gy) and stable with or without ABC. Considering axillary irradiation, the mean dose delivered to breasts remained low (<9 Gy), without significant difference using ABC or not. The mean radiation dose delivered to thyroid was stable using ABC or not. Conclusions: Using ABC is feasible in childhood. The use of ABC decreases normal lung tissue irradiation. Concerning heart irradiation, a minimal gain is also shown. No significant change has been demonstrated concerning breast and thyroid irradiation.« less

Sensitive and Specific Fluorescent Probes for Functional Analysis of the Three Major Types of Mammalian ABC Transporters

PubMed Central

Lebedeva, Irina V.; Pande, Praveen; Patton, Wayne F.

2011-01-01

An underlying mechanism for multi drug resistance (MDR) is up-regulation of the transmembrane ATP-binding cassette (ABC) transporter proteins. ABC transporters also determine the general fate and effect of pharmaceutical agents in the body. The three major types of ABC transporters are MDR1 (P-gp, P-glycoprotein, ABCB1), MRP1/2 (ABCC1/2) and BCRP/MXR (ABCG2) proteins. Flow cytometry (FCM) allows determination of the functional expression levels of ABC transporters in live cells, but most dyes used as indicators (rhodamine 123, DiOC2(3), calcein-AM) have limited applicability as they do not detect all three major types of ABC transporters. Dyes with broad coverage (such as doxorubicin, daunorubicin and mitoxantrone) lack sensitivity due to overall dimness and thus may yield a significant percentage of false negative results. We describe two novel fluorescent probes that are substrates for all three common types of ABC transporters and can serve as indicators of MDR in flow cytometry assays using live cells. The probes exhibit fast internalization, favorable uptake/efflux kinetics and high sensitivity of MDR detection, as established by multidrug resistance activity factor (MAF) values and Kolmogorov-Smirnov statistical analysis. Used in combination with general or specific inhibitors of ABC transporters, both dyes readily identify functional efflux and are capable of detecting small levels of efflux as well as defining the type of multidrug resistance. The assay can be applied to the screening of putative modulators of ABC transporters, facilitating rapid, reproducible, specific and relatively simple functional detection of ABC transporter activity, and ready implementation on widely available instruments. PMID:21799851

Chemical composition of rainwater at Maldives Climate Observatory at Hanimaadhoo (MCOH)

NASA Astrophysics Data System (ADS)

Das, R.; Granat, L.; Leck, C.; Praveen, P. S.; Rodhe, H.

2011-04-01

Water-soluble inorganic components in rain deposited at the Maldives Climate Observatory Hanimaadhoo (MCOH) were examined to determine seasonality and possible source regions. The study, which is part of the Atmospheric Brown Cloud (ABC) project, covers the period June 2005 to December 2007. Air mass trajectories were used to separate the data into situations with transport of air from India and adjacent parts of the Asian continent during the months December and January (Indian group) and those with southerly flow from the Indian Ocean during the summer monsoon season June to September (Marine group). A third trajectory group was identified with transport from the northern parts of the Arabian Sea and adjacent land areas during the months March, April and October (Arabian Sea group). The concentrations of nss-SO42-, NH4+ and NO3- were more than a factor of 4 higher in the Indian group than in the Marine group. The average rainwater pH was significantly lower in the Indian group (4.7) than in the Marine group (6.0). This shows a pronounced influence of continental pollutants during December and January. The origin of the very high concentration of nss-Ca2+ found in the Marine group - a factor of 7 higher than in the Indian group - is unclear. We discuss various possibilities including long-range transport from the African or Australian continents, local dust from nearby islands and calcareous plankton debris and exopolymer gels emitted from the ocean surface. The occurrence of NO3- and NH4+ in the Marine group suggests emissions from the ocean surface. Part of the NO3- could also be associated with lightning over the ocean. Despite the fact that the concentrations of nss-SO42-, NO3-, and NH4+ were highest in the Indian group the wet deposition was at least as big in the Marine group reflecting the larger amount of rainfall during the monsoon season. The annual wet deposition of NO3-, NH4+ and nss-SO42- at MCOH is about a factor of three lower than observed at rural sites in India.

Performance Tests of Snow-Related Variables Over the Tibetan Plateau and Himalayas Using a New Version of NASA GEOS-5 Land Surface Model that Includes the Snow Darkening Effect

NASA Technical Reports Server (NTRS)

Yasunari, Tppei J.; Lau, K.-U.; Koster, Randal D.; Suarez, Max; Mahanama, Sarith; Dasilva, Arlindo M.; Colarco, Peter R.

2011-01-01

The snow darkening effect, i.e. the reduction of snow albedo, is caused by absorption of solar radiation by absorbing aerosols (dust, black carbon, and organic carbon) deposited on the snow surface. This process is probably important over Himalayan and Tibetan glaciers due to the transport of highly polluted Atmospheric Brown Cloud (ABC) from the Indo-Gangetic Plain (IGP). This effect has been incorporated into the NASA Goddard Earth Observing System model, version 5 (GEOS-5) atmospheric transport model. The Catchment land surface model (LSM) used in GEOS-5 considers 3 snow layers. Code was developed to track the mass concentration of aerosols in the three layers, taking into account such processes as the flushing of the compounds as liquid water percolates through the snowpack. In GEOS-5, aerosol emissions, transports, and depositions are well simulated in the Goddard Chemistry Aerosol Radiation and Transport (GO CART) module; we recently made the connection between GOCART and the GEOS-5 system fitted with the revised LSM. Preliminary simulations were performed with this new system in "replay" mode (i.e., with atmospheric dynamics guided by reanalysis) at 2x2.5 degree horizontal resolution, covering the period 1 November 2005 - 31 December 2009; we consider the final three years of simulation here. The three simulations used the following variants of the LSM: (1) the original Catchment LSM with a fixed fresh snowfall density of 150 kg m-3 ; (2) the LSM fitted with the new snow albedo code, used here without aerosol deposition but with changes in density formulation and melting water effect on snow specific surface area, (3) the LSM fitted with the new snow albedo code as same as (2) but with fixed aerosol deposition rates (computed from GOCART values averaged over the Tibetan Plateau domain [Ion.: 60-120E; lat.: 20-50N] during March-May 2008) applied to all grid points at every time step. For (2) and (3), the same setting on the fresh snowfall density as in (1) was used.

Temporal dynamics of the ABC transporter response to insecticide treatment: insights from the malaria vector Anopheles stephensi

NASA Astrophysics Data System (ADS)

Epis, Sara; Porretta, Daniele; Mastrantonio, Valentina; Urbanelli, Sandra; Sassera, Davide; De Marco, Leone; Mereghetti, Valeria; Montagna, Matteo; Ricci, Irene; Favia, Guido; Bandi, Claudio

2014-12-01

In insects, ABC transporters have been shown to contribute to defence/resistance to insecticides by reducing toxic concentrations in cells/tissues. Despite the extensive studies about this detoxifying mechanism, the temporal patterns of ABC transporter activation have been poorly investigated. Using the malaria vector Anopheles stephensi as a study system, we investigated the expression profile of ABC genes belonging to different subfamilies in permethrin-treated larvae at different time points (30 min to 48 h). Our results showed that the expression of ABCB and ABCG subfamily genes was upregulated at 1 h after treatment, with the highest expression observed at 6 h. Therefore, future investigations on the temporal dynamics of ABC gene expression will allow a better implementation of insecticide treatment regimens, including the use of specific inhibitors of ABC efflux pumps.

Parameter Estimation for a Turbulent Buoyant Jet Using Approximate Bayesian Computation

NASA Astrophysics Data System (ADS)

Christopher, Jason D.; Wimer, Nicholas T.; Hayden, Torrey R. S.; Lapointe, Caelan; Grooms, Ian; Rieker, Gregory B.; Hamlington, Peter E.

2016-11-01

Approximate Bayesian Computation (ABC) is a powerful tool that allows sparse experimental or other "truth" data to be used for the prediction of unknown model parameters in numerical simulations of real-world engineering systems. In this presentation, we introduce the ABC approach and then use ABC to predict unknown inflow conditions in simulations of a two-dimensional (2D) turbulent, high-temperature buoyant jet. For this test case, truth data are obtained from a simulation with known boundary conditions and problem parameters. Using spatially-sparse temperature statistics from the 2D buoyant jet truth simulation, we show that the ABC method provides accurate predictions of the true jet inflow temperature. The success of the ABC approach in the present test suggests that ABC is a useful and versatile tool for engineering fluid dynamics research.

LhnR and upstream operon LhnABC in Agrobacterium vitis regulate the induction of tobacco hypersensitive responses, grape necrosis and swarming motility.

PubMed

Zheng, Desen; Hao, Guixia; Cursino, Luciana; Zhang, Hongsheng; Burr, Thomas J

2012-09-01

The characterization of Tn5 transposon insertional mutants of Agrobacterium vitis strain F2/5 revealed a gene encoding a predicted LysR-type transcriptional regulator, lhnR (for 'LysR-type regulator associated with HR and necrosis'), and an immediate upstream operon consisting of three open reading frames (lhnABC) required for swarming motility, surfactant production and the induction of a hypersensitive response (HR) on tobacco and necrosis on grape. The operon lhnABC is unique to A. vitis among the sequenced members in Rhizobiaceae. Mutagenesis of lhnR and lhnABC by gene disruption and complementation of ΔlhnR and ΔlhnABC confirmed their roles in the expression of these phenotypes. Mutation of lhnR resulted in complete loss of HR, swarming motility, surfactant production and reduced necrosis, whereas mutation of lhnABC resulted in loss of swarming motility, delayed and reduced HR development and reduced surfactant production and necrosis. The data from promoter-green fluorescent protein (gfp) fusions showed that lhnR suppresses the expression of lhnABC and negatively autoregulates its own expression. It was also shown that lhnABC negatively affects its own expression and positively affects the transcription of lhnR. lhnR and lhnABC constitute a regulatory circuit that coordinates the transcription level of lhnR, resulting in the expression of swarming, surfactant, HR and necrosis phenotypes. © 2012 THE AUTHORS. MOLECULAR PLANT PATHOLOGY © 2012 BSPP AND BLACKWELL PUBLISHING LTD.

Constraining Dust Hazes at the L/T Transition via Variability

NASA Astrophysics Data System (ADS)

Radigan, Jacqueline; Apai, Daniel; Yang, Hao; Hiranaka, Kay; Cruz, Kelle; Buenzli, Esther; Marley, Mark

2014-12-01

The T2 dwarf SIMP 1629+03 is a variable L/T transition dwarf, with a normal near-infrared spectrum. However, it is remarkable in that the wavelength dependence of its variability differs markedly from that of other L/T transition brown dwarfs. In particular, the absence of a water absorption feature in its variability spectrum indicates that a patchy, high-altitude haze, rather than a deeper cloud layer is responsible for the observed variations. We propose to obtain Spitzer+HST observations of SIMP1629+02 over two consecutive rotations periods in order to simultaneously map it?s spectral variability across 1-5 um. The wide wavelength coverage will provide a suitable lever-arm for constraining the particle size distribution in the haze. A truly flat spectrum across this wavelength range would indicate large particle sizes in comparison to those inferred for red L-dwarf hazes, and would therefore provide direct evidence of grain growth with decreasing effective temperature and/or a grain-size dependence on surface gravity in brown dwarf atmospheres.

Our bodies are our own: resistance to ABC-based HIV-prevention programmes in northern Tanzanian conservation organisations.

PubMed

Reid-Hresko, John

2014-01-01

ABC-based HIV-prevention programmes have been widely employed in northern Tanzanian wildlife conservation settings in an attempt to (re)shape the sexual behaviours of conservation actors. Utilising findings from 66 semi-structured interviews conducted in 2009-2010, this paper examines ABC prevention as a form of Foucauldian governmentality--circulating technologies of power that mobilise disciplinary technologies and attempt to transform such efforts into technologies of the self--and explores how individuals understand and respond to attempts to govern their behaviour. ABC regimes attempt to rework subjectivity, positioning HIV-related behaviours within a risk-based neoliberal rationality. However, efforts to use ABC as a technology to govern populations and individual bodies are largely incommensurate with existing Tanzanian sociocultural formations, including economic and gendered inequalities, and local understandings of sexuality. The language research participants used to talk about ABC and the justifications they offered for non-compliance illuminate this discrepancy. Data reveal that the recipients of ABC campaigns are active producers of understandings that work for them in their lives, but may not produce the behavioural shifts envisioned by programme goals. These findings corroborate previous research, which questions the continued plausibility of ABC as a stand-alone HIV- prevention framework.

Applying Activity Based Costing (ABC) Method to Calculate Cost Price in Hospital and Remedy Services

PubMed Central

Rajabi, A; Dabiri, A

2012-01-01

Background Activity Based Costing (ABC) is one of the new methods began appearing as a costing methodology in the 1990’s. It calculates cost price by determining the usage of resources. In this study, ABC method was used for calculating cost price of remedial services in hospitals. Methods: To apply ABC method, Shahid Faghihi Hospital was selected. First, hospital units were divided into three main departments: administrative, diagnostic, and hospitalized. Second, activity centers were defined by the activity analysis method. Third, costs of administrative activity centers were allocated into diagnostic and operational departments based on the cost driver. Finally, with regard to the usage of cost objectives from services of activity centers, the cost price of medical services was calculated. Results: The cost price from ABC method significantly differs from tariff method. In addition, high amount of indirect costs in the hospital indicates that capacities of resources are not used properly. Conclusion: Cost price of remedial services with tariff method is not properly calculated when compared with ABC method. ABC calculates cost price by applying suitable mechanisms but tariff method is based on the fixed price. In addition, ABC represents useful information about the amount and combination of cost price services. PMID:23113171

MetaABC--an integrated metagenomics platform for data adjustment, binning and clustering.

PubMed

Su, Chien-Hao; Hsu, Ming-Tsung; Wang, Tse-Yi; Chiang, Sufeng; Cheng, Jen-Hao; Weng, Francis C; Kao, Cheng-Yan; Wang, Daryi; Tsai, Huai-Kuang

2011-08-15

MetaABC is a metagenomic platform that integrates several binning tools coupled with methods for removing artifacts, analyzing unassigned reads and controlling sampling biases. It allows users to arrive at a better interpretation via series of distinct combinations of analysis tools. After execution, MetaABC provides outputs in various visual formats such as tables, pie and bar charts as well as clustering result diagrams. MetaABC source code and documentation are available at http://bits2.iis.sinica.edu.tw/MetaABC/ CONTACT: dywang@gate.sinica.edu.tw; hktsai@iis.sinica.edu.tw Supplementary data are available at Bioinformatics online.

Characterisation of single domain ATP-binding cassette protien homologues of Theileria parva.

PubMed

Kibe, M K; Macklin, M; Gobright, E; Bishop, R; Urakawa, T; ole-MoiYoi, O K

2001-09-01

Two distinct genes encoding single domain, ATP-binding cassette transport protein homologues of Theileria parva were cloned and sequenced. Neither of the genes is tandemly duplicated. One gene, TpABC1, encodes a predicted protein of 593 amino acids with an N-terminal hydrophobic domain containing six potential membrane-spanning segments. A single discontinuous ATP-binding element was located in the C-terminal region of TpABC1. The second gene, TpABC2, also contains a single C-terminal ATP-binding motif. Copies of TpABC2 were present at four loci in the T. parva genome on three different chromosomes. TpABC1 exhibited allelic polymorphism between stocks of the parasite. Comparison of cDNA and genomic sequences revealed that TpABC1 contained seven short introns, between 29 and 84 bp in length. The full-length TpABC1 protein was expressed in insect cells using the baculovirus system. Application of antibodies raised against the recombinant antigen to western blots of T. parva piroplasm lysates detected an 85 kDa protein in this life-cycle stage.

Sulfadiazine resistance in Toxoplasma gondii: no involvement of overexpression or polymorphisms in genes of therapeutic targets and ABC transporters

PubMed Central

Doliwa, Christelle; Escotte-Binet, Sandie; Aubert, Dominique; Sauvage, Virginie; Velard, Frédéric; Schmid, Aline; Villena, Isabelle

2013-01-01

Several treatment failures have been reported for the treatment of toxoplasmic encephalitis, chorioretinitis, and congenital toxoplasmosis. Recently we found three Toxoplasma gondii strains naturally resistant to sulfadiazine and we developed in vitro two sulfadiazine resistant strains, RH-RSDZ and ME-49-RSDZ, by gradual pressure. In Plasmodium, common mechanisms of drug resistance involve, among others, mutations and/or amplification within genes encoding the therapeutic targets dhps and dhfr and/or the ABC transporter genes family. To identify genotypic and/or phenotypic markers of resistance in T. gondii, we sequenced and analyzed the expression levels of therapeutic targets dhps and dhfr, three ABC genes, two Pgp, TgABC.B1 and TgABC.B2, and one MRP, TgABC.C1, on sensitive strains compared to sulfadiazine resistant strains. Neither polymorphism nor overexpression was identified. Contrary to Plasmodium, in which mutations and/or overexpression within gene targets and ABC transporters are involved in antimalarial resistance, T. gondii sulfadiazine resistance is not related to these toxoplasmic genes studied. PMID:23707894

Optimization of Straight Cylindrical Turning Using Artificial Bee Colony (ABC) Algorithm

NASA Astrophysics Data System (ADS)

Prasanth, Rajanampalli Seshasai Srinivasa; Hans Raj, Kandikonda

2017-04-01

Artificial bee colony (ABC) algorithm, that mimics the intelligent foraging behavior of honey bees, is increasingly gaining acceptance in the field of process optimization, as it is capable of handling nonlinearity, complexity and uncertainty. Straight cylindrical turning is a complex and nonlinear machining process which involves the selection of appropriate cutting parameters that affect the quality of the workpiece. This paper presents the estimation of optimal cutting parameters of the straight cylindrical turning process using the ABC algorithm. The ABC algorithm is first tested on four benchmark problems of numerical optimization and its performance is compared with genetic algorithm (GA) and ant colony optimization (ACO) algorithm. Results indicate that, the rate of convergence of ABC algorithm is better than GA and ACO. Then, the ABC algorithm is used to predict optimal cutting parameters such as cutting speed, feed rate, depth of cut and tool nose radius to achieve good surface finish. Results indicate that, the ABC algorithm estimated a comparable surface finish when compared with real coded genetic algorithm and differential evolution algorithm.

ABC1 Consensus Conference - a German Perspective: First International Consensus Conference on Advanced Breast Cancer (ABC1), Lisbon, November 5, 2011.

PubMed

Thomssen, Christoph; Marschner, Norbert; Untch, Michael; Decker, Thomas; Hegewisch-Becker, Susanna; Jackisch, Christian; Janni, Wolfgang; Hans-Joachim, Lück; von Minckwitz, Gunter; Scharl, Anton; Schneeweiss, Andreas; Tesch, Hans; Welt, Anja; Harbeck, Nadia

2012-02-01

A group of German breast cancer experts (medical oncologists and gynaecologists) reviewed and commented on the results of the first international 'Advanced Breast Cancer First Consensus Conference' (ABC1) for the diagnosis and treatment of advanced breast cancer. The ABC1 Conference is an initiative of the European School of Oncology (ESO) Metastatic Breast Cancer Task Force in cooperation with the EBCC (European Breast Cancer Conference), ESMO (European Society of Medical Oncology) and the American JNCI (Journal of the National Cancer Institute). The main focus of the ABC1 Conference was metastatic breast cancer (stage IV). The ABC1 consensus is based on the vote of 33 breast cancer experts from different countries and has been specified as a guideline for therapeutic practice by the German expert group. It is the objective of the ABC1 consensus as well as of the German comments to provide an internationally standardized and evidence-based foundation for qualified decision-making in the treatment of metastatic breast cancer.

Implementation and comparative analysis of the optimisations produced by evolutionary algorithms for the parameter extraction of PSP MOSFET model

NASA Astrophysics Data System (ADS)

Hadia, Sarman K.; Thakker, R. A.; Bhatt, Kirit R.

2016-05-01

The study proposes an application of evolutionary algorithms, specifically an artificial bee colony (ABC), variant ABC and particle swarm optimisation (PSO), to extract the parameters of metal oxide semiconductor field effect transistor (MOSFET) model. These algorithms are applied for the MOSFET parameter extraction problem using a Pennsylvania surface potential model. MOSFET parameter extraction procedures involve reducing the error between measured and modelled data. This study shows that ABC algorithm optimises the parameter values based on intelligent activities of honey bee swarms. Some modifications have also been applied to the basic ABC algorithm. Particle swarm optimisation is a population-based stochastic optimisation method that is based on bird flocking activities. The performances of these algorithms are compared with respect to the quality of the solutions. The simulation results of this study show that the PSO algorithm performs better than the variant ABC and basic ABC algorithm for the parameter extraction of the MOSFET model; also the implementation of the ABC algorithm is shown to be simpler than that of the PSO algorithm.

Effect of thermal treatment on the quality of cloudy apple juice.

PubMed

Krapfenbauer, Gottfried; Kinner, Mathias; Gössinger, Manfred; Schönlechner, Regine; Berghofer, Emmerich

2006-07-26

Apple juice from eight different varieties of apples was heated at high-temperature (60-90 degrees C) and short-time (20-100 s) (HTST) combinations. To determine the effect of heating conditions on enzymatic browning and cloud stability in apple juices, the activity of polyphenol oxidase and pectinesterase was analyzed and correlated with the thermal treatment conditions and the quality of the juice. Additional investigations included the measurement of pH value, soluble solid content, titratable acidity, color, and turbidity after 3 and 6 months. The results showed that HTST treatment at 80 degrees C already inactivated polyphenol oxidase, whereas pectinesterase activity was reduced to half and could even at 90 degrees C not be inactivated completely. In fact, highest residual pectinesterase activity was found at 60 degrees C. Heating at 70 degrees C caused stable pectinesterase activity and even a slight increase for 50 and 100 s heating times. Turbidity and lightness increased after HTST treatment. In particular, differences in cloud stability between the varieties were measured. HTST parameters did not correlate with the residual cloud stability after 6 months. The sensory evaluation revealed that only a few combinations were distinguishable. The best stability of cloud and color in relation to heat impact was achieved by HTST treatment between 70 degrees C/100 s and 80 degrees C/20 s.

View of a dust storm taken from Atlantis during STS-106

NASA Image and Video Library

2000-09-11

STS106-718-056 (11 September 2000) --- One of the STS-106 crew members on board the Space Shuttle Atlantis used a handheld 70mm camera to photograph this image of Afghanistan dust/front winds in the upper Amu Darya Valley. The strong winds along the northern border of Afghanistan lofted thick, light brown dust into the air (top half of the view). In this desert environment land surfaces are not protected by vegetation from the effect of blowing wind. The central Asian deserts experience the greatest number of dust storm days on the planet each year. The sharp dust front shows that the dust has not traveled far, but has been raised from the surfaces in the view. Dust is entrained in the atmosphere by horizontal winds but also by vertical movements. Here the vertical component is indicated by the fact that the higher points along the dust front are each topped by a small cumulus cloud, which appear as a line of small white puffballs. Cumulus clouds indicate upward motion and here the air which has entrained the dust is lifting the air above to the level of condensation at each point where a small cloud has formed.

Iowa ABC connections : [tech transfer summary].

DOT National Transportation Integrated Search

2015-06-01

The Iowa Department of Transportation (DOT) and other organizations have : been developing accelerated bridge construction (ABC) concepts, details, and : processes, and Iowa has come to be viewed as a national leader in the area of : ABC. However, th...

Rhombohedral Multilayer Graphene: A Magneto-Raman Scattering Study.

PubMed

Henni, Younes; Ojeda Collado, Hector Pablo; Nogajewski, Karol; Molas, Maciej R; Usaj, Gonzalo; Balseiro, Carlos A; Orlita, Milan; Potemski, Marek; Faugeras, Clement

2016-06-08

Graphene layers are known to stack in two stable configurations, namely, ABA or ABC stacking, with drastically distinct electronic properties. Unlike the ABA stacking, little has been done to experimentally investigate the electronic properties of ABC graphene multilayers. Here, we report on the first magneto optical study of a large ABC domain in a graphene multilayer flake, with ABC sequences exceeding 17 graphene sheets. ABC-stacked multilayers can be fingerprinted with a characteristic electronic Raman scattering response, which persists even at room temperatures. Tracing the magnetic field evolution of the inter Landau level excitations from this domain gives strong evidence for the existence of a dispersionless electronic band near the Fermi level, characteristic of such stacking. Our findings present a simple yet powerful approach to probe ABC stacking in graphene multilayer flakes, where this highly degenerated band appears as an appealing candidate to host strongly correlated states.

Modified artificial bee colony algorithm for reactive power optimization

NASA Astrophysics Data System (ADS)

Sulaiman, Noorazliza; Mohamad-Saleh, Junita; Abro, Abdul Ghani

2015-05-01

Bio-inspired algorithms (BIAs) implemented to solve various optimization problems have shown promising results which are very important in this severely complex real-world. Artificial Bee Colony (ABC) algorithm, a kind of BIAs has demonstrated tremendous results as compared to other optimization algorithms. This paper presents a new modified ABC algorithm referred to as JA-ABC3 with the aim to enhance convergence speed and avoid premature convergence. The proposed algorithm has been simulated on ten commonly used benchmarks functions. Its performance has also been compared with other existing ABC variants. To justify its robust applicability, the proposed algorithm has been tested to solve Reactive Power Optimization problem. The results have shown that the proposed algorithm has superior performance to other existing ABC variants e.g. GABC, BABC1, BABC2, BsfABC dan IABC in terms of convergence speed. Furthermore, the proposed algorithm has also demonstrated excellence performance in solving Reactive Power Optimization problem.

Aggressive aneurysmal bone cyst of the maxilla confused with telangiectatic osteosarcoma.

PubMed

Lee, Hyun-Min; Cho, Kyu-Sup; Choi, Kyung-Un; Roh, Hwan-Jung

2012-06-01

Aneurysmal bone cyst (ABC) is a benign, expansile lesion typically affecting the long bones and vertebrae of patients younger than 20 years. Approximately 2% of ABCs occur in the head and neck region, most commonly affecting the mandible. Although the most common co-existing lesion associated with ABCs is the giant cell tumor, ABCs can be radiologically confused with telangiectatic osteosarcoma in cases of aggressive behavior and rapid growth. Here, we report a case of an aggressive ABC of the maxilla confused with telangiectatic osteosarcoma in a patient who underwent several operations for an osteoblastoma that was diagnosed histopathologically. This case highlights the need for a differential diagnosis both radiologically and histopathologically, because ABCs can easily be interpreted as a giant cell tumor or an osteoblastoma, and, on occasion, can be mistaken for osteogenic malignancies. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

NASA Space Telescopes See Weather Patterns in Brown Dwarf

NASA Image and Video Library

2017-12-08

JANUARY 8, 2013: Astronomers using NASA's Hubble and Spitzer space telescopes have probed the stormy atmosphere of a brown dwarf named 2MASSJ22282889-431026, creating the most detailed "weather map" yet for this class of cool, star-like orbs. The forecast shows wind-driven, planet-sized clouds enshrouding these strange worlds. Brown dwarfs form out of condensing gas, as stars do, but lack the mass to fuse atoms and produce energy. Instead, these objects, which some call failed stars, are more similar to gas planets with their complex, varied atmospheres. The new research is a stepping stone toward a better understanding not only brown dwarfs, but also of the atmospheres of planets beyond our solar system. Hubble and Spitzer simultaneously watched the brown dwarf as its light varied in time, brightening and dimming about every 90 minutes as the body rotated. Astronomers found the timing of this change in brightness depended on whether they looked using different wavelengths of infrared light. The variations are the result of different layers or patches of material swirling around in the brown dwarf in windy storms as large as Earth itself. Spitzer and Hubble see different atmospheric layers because certain infrared wavelengths are blocked by vapors of water and methane high up, while other infrared wavelengths emerge from much deeper layers. Daniel Apai, the principal investigator of the research from the University of Arizona, Tucson, presented the results at the American Astronomical Society meeting on January 8 in Long Beach, Calif. A study describing the results, led by Esther Buenzli, also of the University of Arizona, is published in the Astrophysical Journal Letters. For more information about this study, visit www.nasa.gov/spitzer . NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Understanding Young Exoplanet Analogs with WISE

NASA Astrophysics Data System (ADS)

Rice, Emily

We propose to tackle outstanding questions about the fundamental properties of young brown dwarfs, which are atmospheric analogs to massive gas giant exoplanets, using public archive data from the Wide-field Infrared Survey Explorer (WISE) combined with our extensive dataset of optical and near-infrared observations, including spectra, proper motions, and parallaxes. Using WISE data we will construct color-color diagrams, color- magnitude diagrams, and spectral energy distributions for our sample of candidate young brown dwarfs. We will fully characterize the spectral properties of the candidates and evaluate their membership in nearby young moving groups in order to obtain independent age estimates. The practical outcomes of this project will allow the research community to use observed colors and spectra to reliably constrain the properties - including effective temperature, gravity, and dust/cloud properties - of both brown dwarfs and gas giant exoplanets. We will also search for new young brown dwarfs in the WISE archive using colors and proper motions. The expanded sample of young brown dwarfs will be used to create a self-contained feedback loop to identify and address the shortcomings of cool atmosphere models and low-mass evolutionary tracks, both of which are already being used to infer the properties of massive exoplanets. Disentangling the effects of physical parameters on the observed properties of young brown dwarfs is directly relevant to studies of exoplanets. Direct observations of exoplanets are currently very limited, and young brown dwarfs are the laboratories in which we can solve existing problems before the onslaught of new observations from instruments capable of directly imaging exoplanets, including the Gemini Planet Imager, Project 1640 at the Palomar Observatory, SPHERE on the VLT, and the James Webb Space Telescope. This project addresses the goal of the NASA Science Mission Directorate to discover how the universe works; in particular, the results of our work will improve our understanding of objects at the intersection of stars and planets and be directly applicable to understanding the atmospheres of directly-imaged exoplanets. The assembled investigators are the absolute best team to accomplish this work. They have extensive and diverse observational experience in astrometry, photometry, and spectroscopy from the optical through the mid-IR, spanning nearly the entire spectral energy distribution of young brown dwarfs and encompassing their most fundamental observational properties. They have considerable experience mining large photometric catalogs and identifying low-gravity very low mass objects. The team maintains collaborations with two groups actively modelling brown dwarf and exoplanet atmospheres and interior evolution. The proposed research organically combines several ongoing projects into a cohesive program that will efficiently incorporate WISE data to disentangle the ambiguous and interdependent physical properties of young brown dwarfs. As a result of the team's previous observational projects, we have assembled a dataset that positions us to best interpret WISE observations brown dwarfs and identify new young brown dwarfs in the WISE archive. A significant parallax program is ongoing, and all of the computing resources and many of the analysis tools are already in place, including several well-tested pipelines for data reduction and analysis and model comparisons. The team will incorporate undergraduate students in the project through an existing NSF-funded REU program.

Preclinical properties and human in vivo assessment of 123 I-ABC577 as a novel SPECT agent for imaging amyloid-β

PubMed Central

Okumura, Yuki; Kobayashi, Ryohei; Onishi, Takako; Shoyama, Yoshinari; Barret, Olivier; Alagille, David; Jennings, Danna; Marek, Kenneth; Seibyl, John; Tamagnan, Gilles; Tanaka, Akihiro; Shirakami, Yoshifumi

2016-01-01

Abstract Non-invasive imaging of amyloid-β in the brain, a hallmark of Alzheimer’s disease, may support earlier and more accurate diagnosis of the disease. In this study, we assessed the novel single photon emission computed tomography tracer 123 I-ABC577 as a potential imaging biomarker for amyloid-β in the brain. The radio-iodinated imidazopyridine derivative 123 I-ABC577 was designed as a candidate for a novel amyloid-β imaging agent. The binding affinity of 123 I-ABC577 for amyloid-β was evaluated by saturation binding assay and in vitro autoradiography using post-mortem Alzheimer’s disease brain tissue. Biodistribution experiments using normal rats were performed to evaluate the biokinetics of 123 I-ABC577. Furthermore, to validate 123 I-ABC577 as a biomarker for Alzheimer’s disease, we performed a clinical study to compare the brain uptake of 123 I-ABC577 in three patients with Alzheimer’s disease and three healthy control subjects. 123 I-ABC577 binding was quantified by use of the standardized uptake value ratio, which was calculated for the cortex using the cerebellum as a reference region. Standardized uptake value ratio images were visually scored as positive or negative. As a result, 123 I-ABC577 showed high binding affinity for amyloid-β and desirable pharmacokinetics in the preclinical studies. In the clinical study, 123 I-ABC577 was an effective marker for discriminating patients with Alzheimer’s disease from healthy control subjects based on visual images or the ratio of cortical-to-cerebellar binding. In patients with Alzheimer’s disease, 123 I-ABC577 demonstrated clear retention in cortical regions known to accumulate amyloid, such as the frontal cortex, temporal cortex, and posterior cingulate. In contrast, less, more diffuse, and non-specific uptake without localization to these key regions was observed in healthy controls. At 150 min after injection, the cortical standardized uptake value ratio increased by ∼60% in patients with Alzheimer’s disease relative to healthy control subjects. Both healthy control subjects and patients with Alzheimer’s disease showed minimal 123 I-ABC577 retention in the white matter. These observations indicate that 123 I-ABC577 may be a useful single photon emission computed tomography imaging maker to identify amyloid-β in the human brain. The availability of an amyloid-β tracer for single photon emission computed tomography might increase the accessibility of diagnostic imaging for Alzheimer’s disease. PMID:26490333

Expressing Constitutively Active Rheb in Adult Dorsal Root Ganglion Neurons Enhances the Integration of Sensory Axons that Regenerate Across a Chondroitinase-Treated Dorsal Root Entry Zone Following Dorsal Root Crush

PubMed Central

Wu, Di; Klaw, Michelle C.; Kholodilov, Nikolai; Burke, Robert E.; Detloff, Megan R.; Côté, Marie-Pascale; Tom, Veronica J.

2016-01-01

While the peripheral branch of dorsal root ganglion neurons (DRG) can successfully regenerate after injury, lesioned central branch axons fail to regrow across the dorsal root entry zone (DREZ), the interface between the dorsal root and the spinal cord. This lack of regeneration is due to the limited regenerative capacity of adult sensory axons and the growth-inhibitory environment at the DREZ, which is similar to that found in the glial scar after a central nervous system (CNS) injury. We hypothesized that transduction of adult DRG neurons using adeno-associated virus (AAV) to express a constitutively-active form of the GTPase Rheb (caRheb) will increase their intrinsic growth potential after a dorsal root crush. Additionally, we posited that if we combined that approach with digestion of upregulated chondroitin sulfate proteoglycans (CSPG) at the DREZ with chondroitinase ABC (ChABC), we would promote regeneration of sensory axons across the DREZ into the spinal cord. We first assessed if this strategy promotes neuritic growth in an in vitro model of the glial scar containing CSPG. ChABC allowed for some regeneration across the once potently inhibitory substrate. Combining ChABC treatment with expression of caRheb in DRG significantly improved this growth. We then determined if this combination strategy also enhanced regeneration through the DREZ after dorsal root crush in adult rats in vivo. After unilaterally crushing C4-T1 dorsal roots, we injected AAV5-caRheb or AAV5-GFP into the ipsilateral C5-C8 DRGs. ChABC or PBS was injected into the ipsilateral dorsal horn at C5-C8 to digest CSPG, for a total of four animal groups (caRheb + ChABC, caRheb + PBS, GFP + ChABC, GFP + PBS). Regeneration was rarely observed in PBS-treated animals, whereas short-distance regrowth across the DREZ was observed in ChABC-treated animals. No difference in axon number or length between the ChABC groups was observed, which may be related to intraganglionic inflammation induced by the injection. ChABC-mediated regeneration is functional, as stimulation of ipsilateral median and ulnar nerves induced neuronal c-Fos expression in deafferented dorsal horn in both ChABC groups. Interestingly, caRheb + ChABC animals had significantly more c-Fos+ nuclei indicating that caRheb expression in DRGs promoted functional synaptogenesis of their axons that regenerated beyond a ChABC-treated DREZ. PMID:27458339

ABC-B transporter genes in Dirofilaria immitis.

PubMed

Bourguinat, Catherine; Che, Hua; Mani, Thangadurai; Keller, Kathy; Prichard, Roger K

2016-08-01

Dirofilaria immitis is a filarial nematode causing infection and heartworm disease in dogs and other canids, cats, and occasionally in humans. Prevention with macrocyclic lactones (ML) is recommended during the mosquito transmission season. Recently, ML resistance has been reported. ABC-B transporter genes are thought to be involved in the mechanism of ML resistance in other nematodes. This study aimed to identify all the ABC-B transporter genes in D. immitis using as a reference the nDi.2.2 D. immitis whole genome, which is not completely annotated. Using bioinformatic tools and PCR amplification on pooled D. immitis genomic DNA and on pooled cDNA, nine ABC transporter genes including one pseudogene were characterized. Bioinformatic and phylogenetic analyses allowed identification of three P-glycoproteins (Pgps) (Dim-pgp-3 Dim-pgp-10, Dim-pgp-11), of two ABC-B half transporter genes (one ortholog of Cel-haf-4 and Cel-haf-9; and one ortholog of Cel-haf-1 and Cel-haf-3), of one ABC half transporter gene (ortholog of Cel-haf-5) that contained an ABC-C motif, and of one additional half transporter that would require functional study for characterization. The number of ABC-B transporter genes identified was lower than in Caenorhabditis elegans and Haemonchus contortus. Further studies are needed to understand their possible role in ML resistance in D. immitis. These ABC transporters constitute a base for ML resistance investigation in D. immitis and advance our understanding of the molecular biology of this parasite. Copyright © 2016. Published by Elsevier Ltd.

Downregulation of miR-29a/b/c in placenta accreta inhibits apoptosis of implantation site intermediate trophoblast cells by targeting MCL1.

PubMed

Gu, Yongzhong; Bian, Yuehong; Xu, Xiaofei; Wang, Xietong; Zuo, Changting; Meng, Jinlai; Li, Hongyan; Zhao, Shigang; Ning, Yunnan; Cao, Yongzhi; Huang, Tao; Yan, Junhao; Chen, Zi-Jiang

2016-12-01

Placenta accreta is defined as abnormal adhesion of placental villi to the uterine myometrium. Although this condition has become more common as a result of the increasing rate of cesarean sections, the underlying causative mechanism(s) remain elusive. Because microRNA-29a/b/c (miR-29a/b/c) have been shown to play important roles in placental development, this study evaluated the roles of these microRNAs in placenta accreta. Expression of miR-29a/b/c and myeloid cell leukemia-1 (MCL1) were quantified in patient tissues and HTR8/SVneo trophoblast cells using the real-time quantitative polymerase chain reaction. Western blotting was used to analyze expression of the MCL1 protein in HTR8/SVneo trophoblast cells with altered expression of miR-29a/b/c. To determine their role in apoptosis, miR-29a/b/c were overexpressed in HTR-8/SVneo cells, and levels of apoptosis were analyzed by flow cytometry. Luciferase activity assays were used to determine whether MCL1 is a target gene of miR-29a/b/c. Expression of miR-29a/b/c was significantly lower in creta sites compared to noncreta sites (p = 0.018, 0.041, and 0.022, respectively), but expression of MCL1 was upregulated in creta sites (p = 0.039). MCL1 expression was significantly downregulated in HTR-8/SVneo cells overexpressing miR-29a/b/c (p = 0.002, 0.008, and 0.013, respectively). Luciferase activity assays revealed that miR-29a/b/c directly target the 3' untranslated region of MCL1 in 293T cells. Over-expression of miR-29a/b/c induced apoptosis in the HTR-8/SVneo trophoblast cell line. Moreover, histopathological evaluation revealed that the number of implantation site intermediate trophoblast (ISIT) cells was increased in creta sites and that these cells were positive for MCL1. Our results demonstrate that in placenta accreta, miR-29a/b/c inhibits apoptosis of ISIT cells by targeting MCL1. These findings provide new insights into the pathogenesis of placenta accreta. Copyright © 2016 Elsevier Ltd. All rights reserved.

CLOUDLESS ATMOSPHERES FOR L/T DWARFS AND EXTRASOLAR GIANT PLANETS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tremblin, P.; Amundsen, D. S.; Chabrier, G.

2016-02-01

The admitted, conventional scenario to explain the complex spectral evolution of brown dwarfs (BDs) since their first detection 20 years ago has always been the key role played by micron-size condensates, called “dust” or “clouds,” in their atmosphere. This scenario, however, faces major problems, in particular the J-band brightening and the resurgence of FeH absorption at the L to T transition, and a physical first-principle understanding of this transition is lacking. In this Letter, we propose a new, completely different explanation for BD and extrasolar giant planet (EGP) spectral evolution, without the need to invoke clouds. We show that, due to themore » slowness of the CO/CH{sub 4} and N{sub 2}/NH{sub 3} chemical reactions, brown dwarf (L and T, respectively) and EGP atmospheres are subject to a thermo-chemical instability similar in nature to the fingering or chemical convective instability present in Earth oceans and at the Earth core/mantle boundary. The induced small-scale turbulent energy transport reduces the temperature gradient in the atmosphere, explaining the observed increase in near-infrared J–H and J–K colors of L dwarfs and hot EGPs, while a warming up of the deep atmosphere along the L to T transition, as the CO/CH{sub 4} instability vanishes, naturally solves the two aforementioned puzzles, and provides a physical explanation of the L to T transition. This new picture leads to a drastic revision of our understanding of BD and EGP atmospheres and their evolution.« less

A Case-study on Turbulence in a Stratocumulus Topped Marine Boundary Layer Observed during VOCALS-Rex

NASA Astrophysics Data System (ADS)

Ghate, V. P.; Albrecht, B. A.; Fairall, C. W.; Miller, M. A.; Brewer, A.

2010-12-01

Turbulence in the stratocumulus topped marine boundary layer (BL) is an important factor that is closely connected to both the cloud macro- and micro-physical characteristics, which can substantially affect their radiaitve properties. Data collected by ship borne instruments on the R/V Ronald H. Brown on November 27, 2008 as a part of the VAMOS Ocean-Cloud-Atmosphere-Land-Study Regional Experiment (VOCALS-Rex) are analyzed to study the turbulence structure of a stratocumulus topped marine BL. The first half of the analyzed 24 hour period was characterized by a coupled BL topped by a precipitating stratocumulus cloud; the second half had clear sky conditions with a decoupled BL. The motion stabilized vertically pointing W-band Doppler cloud radar reported the full Doppler spectrum at a temporal and spatial resolution of 3 Hz and 25 m respectively. The collocated motion stabilized Doppler lidar was operating at 2 micron wavelength and reported the Signal to Noise Ratio (SNR) and Doppler velocity at temporal and spatial resolution of 2 Hz and 30 m respectively. Data from the cloud Doppler radar and Doppler lidar were combined to yield the turbulence structure of entire BL in both cloudy and clear sky conditions. Retrievals were performed to remove the contribution of precipitating drizzle drops to the mean Doppler velocity measured by the radar. Hourly profiles of vertical velocity variance suggested high BL variance during coupled BL conditions and low variance during decoupled BL conditions. Some of the terms in second and third moment budget of vertical velocity are calculated and their diurnal evolution is explored.

Constraining Substellar Magnetic Dynamos using Brown Dwarf Radio Aurorae

NASA Astrophysics Data System (ADS)

Kao, Melodie Minyu

Brown dwarfs share characteristics with both low-mass stars and gas giant planets, making them useful laboratories for studying physics occurring in objects throughout this low mass and temperature range. Of particular interest in this dissertation is the nature of the engine driving their magnetic fields. Fully convective magnetic dynamos can operate in low mass stars, brown dwarfs, gas giant planets, and even fluid metal cores in small rocky planets. Objects in this wide mass range are capable of hosting strong magnetic fields, which shape much of the evolution of planets and stars: strong fields can protect planetary atmospheres from evaporating, generate optical and infrared emission that masquerade as clouds in the atmospheres of other worlds, and affect planet formation mechanisms. Thus, implications from understanding convective dynamo mechanisms also extend to exoplanet habitability. How the convective dynamos driving these fields operate remains an important open problem. While we have extensive data to inform models of magnetic dynamo mechanisms in higher mass stars like our Sun, the coolest and lowest-mass objects that probe the substellar-planetary boundary do not possess the internal structures necessary to drive solar-type dynamos. A number of models examining fully convective dynamo mechanisms have been proposed but they remain unconstrained by magnetic field measurements in the lowest end of the substellar mass and temperature space. Detections of highly circularly polarized pulsed radio emission provide our only window into magnetic field measurements for objects in the ultracool brown dwarf regime, but these detections are very rare; until this dissertation, only one attempt out of 60 had been successful. The work presented in this dissertation seeks to address this problem and examines radio emission from late L, T, and Y spectral type brown dwarfs spanning 1-6 times the surface temperature of Earth and explores implications for fully convective magnetic dynamo models.

Approximate Bayesian computation in large-scale structure: constraining the galaxy-halo connection

NASA Astrophysics Data System (ADS)

Hahn, ChangHoon; Vakili, Mohammadjavad; Walsh, Kilian; Hearin, Andrew P.; Hogg, David W.; Campbell, Duncan

2017-08-01

Standard approaches to Bayesian parameter inference in large-scale structure assume a Gaussian functional form (chi-squared form) for the likelihood. This assumption, in detail, cannot be correct. Likelihood free inferences such as approximate Bayesian computation (ABC) relax these restrictions and make inference possible without making any assumptions on the likelihood. Instead ABC relies on a forward generative model of the data and a metric for measuring the distance between the model and data. In this work, we demonstrate that ABC is feasible for LSS parameter inference by using it to constrain parameters of the halo occupation distribution (HOD) model for populating dark matter haloes with galaxies. Using specific implementation of ABC supplemented with population Monte Carlo importance sampling, a generative forward model using HOD and a distance metric based on galaxy number density, two-point correlation function and galaxy group multiplicity function, we constrain the HOD parameters of mock observation generated from selected 'true' HOD parameters. The parameter constraints we obtain from ABC are consistent with the 'true' HOD parameters, demonstrating that ABC can be reliably used for parameter inference in LSS. Furthermore, we compare our ABC constraints to constraints we obtain using a pseudo-likelihood function of Gaussian form with MCMC and find consistent HOD parameter constraints. Ultimately, our results suggest that ABC can and should be applied in parameter inference for LSS analyses.

The minimal-ABC trees with B1-branches.

PubMed

Dimitrov, Darko; Du, Zhibin; Fonseca, Carlos M da

2018-01-01

The atom-bond connectivity index (or, for short, ABC index) is a molecular structure descriptor bridging chemistry to graph theory. It is probably the most studied topological index among all numerical parameters of a graph that characterize its topology. For a given graph G = (V, E), the ABC index of G is defined as [Formula: see text], where di denotes the degree of the vertex i, and ij is the edge incident to the vertices i and j. A combination of physicochemical and the ABC index properties are commonly used to foresee the bioactivity of different chemical composites. Additionally, the applicability of the ABC index in chemical thermodynamics and other areas of chemistry, such as in dendrimer nanostars, benzenoid systems, fluoranthene congeners, and phenylenes is well studied in the literature. While finding of the graphs with the greatest ABC-value is a straightforward assignment, the characterization of the tree(s) with minimal ABC index is a problem largely open and has recently given rise to numerous studies and conjectures. A B1-branch of a graph is a pendent path of order 2. In this paper, we provide an important step forward to the full characterization of these minimal trees. Namely, we show that a minimal-ABC tree contains neither 4 nor 3 B1-branches. The case when the number of B1-branches is 2 is also considered.

Use of an autologous bioengineered composite skin in extensive burns: Clinical and functional outcomes. A multicentric study.

PubMed

Gómez, C; Galán, J M; Torrero, V; Ferreiro, I; Pérez, D; Palao, R; Martínez, E; Llames, S; Meana, A; Holguín, P

2011-06-01

We report clinical and functional outcomes obtained after application of an autologous bioengineered composite skin (ABCS) produced in a single Spanish tissue-engineering unit. Twenty-five burned patients treated with ABCS from 1999 to 2007 in five burn centres were included in the study. Mean age was 29 years (SD 11), with mean total body surface area (TBSA) burned being 74% (SD 17) and mean full-thickness injury of 61% (SD 19) of TBSA. The mean area initially engrafted with ABCS was 24% (SD 13) of TBSA, with a final take of 49% (SD 30, range 0-100%). ABCS achieved permanent coverage of a mean of 11% (SD 8) of TBSA. In subset analyses, lack of pre- and post-application wound bed infection and lack of serious acute systemic complications at the time of engraftment were significantly associated with better ABCS take. Final take obtained with ABCS could be improved with the use of non-cytotoxic topical antibiotics following engraftment. The use of plasma to prepare ABCS reduces production costs: cost-effectiveness ratio is not a limitation for its use. In terms of patient satisfaction, cosmetic/functional outcomes (general appearance, texture, flexibility, sensitivity and colour) of ABCS and split-thickness autografts are not different statistically. Copyright © 2010 Elsevier Ltd and ISBI. All rights reserved.

Design, Synthesis and Biological Evaluation of Novel Phosphorylated Abacavir Derivatives as Antiviral Agents Against Newcastle Disease Virus Infection in Chicken.

PubMed

K A, Suresh; Venkata Subbaiah, Kadiam C; Lavanya, Rayapu; Chandrasekhar, Kuruva; Chamarti, Naga Raju; Kumar, M Suresh; Wudayagiri, Rajendra; Valluru, Lokanatha

2016-09-01

Newcastle disease virus is the most devastating virus in poultry industry. It can eradicate the entire poultry flocks once infected. This study is aimed to investigate the antiviral efficacy of novel phosphorylated analogues of the drug abacavir (ABC) against Newcastle disease virus (NDV). About 16 analogues of ABC were designed and docking was performed against fusion protein of NDV. Three compounds were identified and selected for synthesis and biological evaluation based on binding affinity and docking scores. The compounds were synthesized and characterized by IR, (1)H, (13)C, (31)P and CHN analysis and mass spectra. These compounds were tested for antiviral efficacy against NDV-infected DF-1 cells. Compound ABC-1 had shown potent antiviral activity as evidenced by significant reduction in plaque units and cytopathic effect. Therefore, ABC-1 was selected to test for NDV-infected chicken survival rate. Effective dose50 concentrations were determined for ABC-1. Antioxidant enzyme levels in brain, liver and lung tissues were estimated. Superoxide dismutase and catalase were significantly raised and lipid peroxidation and HA titer levels were decreased upon treatment with 2 mg/kg body weight ABC-1. Histopathological modifications were also restored in the ABC-1-treated group. These findings demonstrated ABC-1 as a potential antiviral agent against NDV in chicken.

Links Between the Oxidation of Glyoxal and Sulfur Dioxide, the Production of Brown Carbon, and Geoengineering Schemes

NASA Astrophysics Data System (ADS)

De Haan, D. O.; Sueme, W. R.; Rynaski, A.; Torkelson, A.; Czer, E. T.

2012-12-01

A correlation between oxalic acid and sulfate in atmospheric aerosol was reported by J. Z. Yu et al. in 2005. It was suggested that this correlation could be explained by the dominance of in-cloud oxidation pathways forming both species from their major precursors, SO2 and glyoxal. The chemistry of these two precursors is linked via the rapid, reversible formation of an adduct molecule reported by Olson and Hoffmann in 1988. We show that at pH > 4, the oxidation of solutions containing both sulfite ions and glyoxal generates a series of redox-active quinones that absorb visible light. Using LCMS in negative ion mode, we quantify the formation of the colored compounds tetrahydroquinone, rhodizonic acid, and croconic acid (CrA) in glyoxal + bisulfite aqueous reaction mixtures as a function of pH. Of these three compounds, CrA would be expected to have the longest lifetime in the atmosphere. Ultimately, the same oxidation products are formed as when SO2 and glyoxal are oxidized separately (e.g. sulfate, oxalate, malonic acid). There are no other reported colored compounds in the oxidation series after CrA. However, comparisons between LCMS and UV-Vis absorbance measurements indicate that even after the three known colored compounds have oxidized, glyoxal / bisulfite reaction samples remain yellow for many days. This suggests the production of additional, unknown compounds that absorb visible light. These experiments show that the linked oxidation of glyoxal and SO2 in clouds and aqueous aerosol is capable of producing brown carbon. This process has the potential to reduce the effectiveness of proposed geoengineering schemes where SO2 would be intentionally added to the atmosphere in order to cool the planet by increasing the planetary albedo through sulfate aerosol formation. The presence of glyoxal in the atmosphere (produced from the oxidation of biogenic gases) could partially cancel the desired cooling effect due to the unintended production of brown carbon. However, the magnitude of this effect depends on the concentration dependence of quinone production. Studies of this concentration dependence are currently underway.

The ABC and AUSSAT.

ERIC Educational Resources Information Center

McGarritty, Ian

1985-01-01

Discusses the Australian Broadcasting Corporation's (ABC) utilization of the AUSSAT telecommunications satellite to extend its television and radio transmission range to reach remote Australian audiences; the satellite's program gathering and interchange capabilities; and ABC's generation of other benefits to offset cost of satellite services.…

Retrieval of atmospheric properties of cloudy L dwarfs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burningham, Ben; Marley, Mark S.; Line, Michael R.

Here, we present the first results from applying the spectral inversion technique in the cloudy L dwarf regime. This new framework provides a flexible approach to modelling cloud opacity which can be built incrementally as the data require and improves upon previous retrieval experiments in the brown dwarf regime by allowing for scattering in two-stream radiative transfer. Our first application of the tool to two mid-L dwarfs is able to reproduce their near-infrared spectra far more closely than grid models. Our retrieved thermal, chemical and cloud profiles allow us to estimate Teff = 1796more » $$+23\\atop{-25}$$ K and logg = 5.21$$+0.05\\atop{-0.08}$$ for 2MASS J05002100+0330501, and for 2MASSW J2224438-015852 we find Teff = 1723 $$+18\\atop{-19}$$ K and log g = 5.31 $$+0.04\\atop{-0.08}$$, in close agreement with previous empirical estimates. Our best model for both objects includes an optically thick cloud deck which passes τcloud ≥ 1 (looking down) at a pressure of around 5 bar. The temperature at this pressure is too high for silicate species to condense, and we argue that corundum and/or iron clouds are responsible for this cloud opacity. Our retrieved profiles are cooler at depth and warmer at altitude than the forward grid models that we compare, and we argue that some form of heating mechanism may be at work in the upper atmospheres of these L dwarfs. We also identify anomalously high CO abundance in both targets, which does not correlate with the warmth of our upper atmospheres or our choice of cloud model, and find similarly anomalous alkali abundance for one of our targets. For these anomalies they may reflect unrecognized shortcomings in our retrieval model or inaccuracies in our gas phase opacities.« less

Retrieval of atmospheric properties of cloudy L dwarfs

DOE PAGES

Burningham, Ben; Marley, Mark S.; Line, Michael R.; ...

2017-05-20

Here, we present the first results from applying the spectral inversion technique in the cloudy L dwarf regime. This new framework provides a flexible approach to modelling cloud opacity which can be built incrementally as the data require and improves upon previous retrieval experiments in the brown dwarf regime by allowing for scattering in two-stream radiative transfer. Our first application of the tool to two mid-L dwarfs is able to reproduce their near-infrared spectra far more closely than grid models. Our retrieved thermal, chemical and cloud profiles allow us to estimate Teff = 1796more » $$+23\\atop{-25}$$ K and logg = 5.21$$+0.05\\atop{-0.08}$$ for 2MASS J05002100+0330501, and for 2MASSW J2224438-015852 we find Teff = 1723 $$+18\\atop{-19}$$ K and log g = 5.31 $$+0.04\\atop{-0.08}$$, in close agreement with previous empirical estimates. Our best model for both objects includes an optically thick cloud deck which passes τcloud ≥ 1 (looking down) at a pressure of around 5 bar. The temperature at this pressure is too high for silicate species to condense, and we argue that corundum and/or iron clouds are responsible for this cloud opacity. Our retrieved profiles are cooler at depth and warmer at altitude than the forward grid models that we compare, and we argue that some form of heating mechanism may be at work in the upper atmospheres of these L dwarfs. We also identify anomalously high CO abundance in both targets, which does not correlate with the warmth of our upper atmospheres or our choice of cloud model, and find similarly anomalous alkali abundance for one of our targets. For these anomalies they may reflect unrecognized shortcomings in our retrieval model or inaccuracies in our gas phase opacities.« less

Activities-specific balance confidence scale for predicting future falls in Indian older adults.

PubMed

Moiz, Jamal Ali; Bansal, Vishal; Noohu, Majumi M; Gaur, Shailendra Nath; Hussain, Mohammad Ejaz; Anwer, Shahnawaz; Alghadir, Ahmad

2017-01-01

Activities-specific balance confidence (ABC) scale is a subjective measure of confidence in performing various ambulatory activities without falling or experiencing a sense of unsteadiness. This study aimed to examine the ability of the Hindi version of the ABC scale (ABC-H scale) to discriminate between fallers and non-fallers and to examine its predictive validity for prospective falls. This was a prospective cohort study. A total of 125 community-dwelling older adults (88 were men) completed the ABC-H scale. The occurrence of falls over the follow-up period of 12 months was recorded. Discriminative validity was analyzed by comparing the total ABC-H scale scores between the faller and non-faller groups. A receiver operating characteristic curve analysis and a logistic regression analysis were used to examine the predictive accuracy of the ABC-H scale. The mean ABC-H scale score of the faller group was significantly lower than that of the non-faller group (52.6±8.1 vs 73.1±12.2; P <0.001). The optimal cutoff value for distinguishing faller and non-faller adults was ≤58.13. The sensitivity, specificity, area under the curve, and positive and negative likelihood ratios of the cutoff score were 86.3%, 87.3%, 0.91 ( P <0.001), 6.84, and 0.16, respectively. The percentage test accuracy and false-positive and false-negative rates were 86.87%, 12.2%, and 13.6%, respectively. A dichotomized total ABC-H scale score of ≤58.13% (adjusted odds ratio =0.032, 95% confidence interval =0.004-0.25, P =0.001) was significantly related with future falls. The ABC-H scores were significantly and independently related with future falls in the community-dwelling Indian older adults. The ability of the ABC-H scale to predict future falls was adequate with high sensitivity and specificity values.

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.

PubMed

Hadjithomas, Michalis; Chen, I-Min Amy; Chu, Ken; Ratner, Anna; Palaniappan, Krishna; Szeto, Ernest; Huang, Jinghua; Reddy, T B K; Cimermančič, Peter; Fischbach, Michael A; Ivanova, Natalia N; Markowitz, Victor M; Kyrpides, Nikos C; Pati, Amrita

2015-07-14

In the discovery of secondary metabolites, analysis of sequence data is a promising exploration path that remains largely underutilized due to the lack of computational platforms that enable such a systematic approach on a large scale. In this work, we present IMG-ABC (https://img.jgi.doe.gov/abc), an atlas of biosynthetic gene clusters within the Integrated Microbial Genomes (IMG) system, which is aimed at harnessing the power of "big" genomic data for discovering small molecules. IMG-ABC relies on IMG's comprehensive integrated structural and functional genomic data for the analysis of biosynthetic gene clusters (BCs) and associated secondary metabolites (SMs). SMs and BCs serve as the two main classes of objects in IMG-ABC, each with a rich collection of attributes. A unique feature of IMG-ABC is the incorporation of both experimentally validated and computationally predicted BCs in genomes as well as metagenomes, thus identifying BCs in uncultured populations and rare taxa. We demonstrate the strength of IMG-ABC's focused integrated analysis tools in enabling the exploration of microbial secondary metabolism on a global scale, through the discovery of phenazine-producing clusters for the first time in Alphaproteobacteria. IMG-ABC strives to fill the long-existent void of resources for computational exploration of the secondary metabolism universe; its underlying scalable framework enables traversal of uncovered phylogenetic and chemical structure space, serving as a doorway to a new era in the discovery of novel molecules. IMG-ABC is the largest publicly available database of predicted and experimental biosynthetic gene clusters and the secondary metabolites they produce. The system also includes powerful search and analysis tools that are integrated with IMG's extensive genomic/metagenomic data and analysis tool kits. As new research on biosynthetic gene clusters and secondary metabolites is published and more genomes are sequenced, IMG-ABC will continue to expand, with the goal of becoming an essential component of any bioinformatic exploration of the secondary metabolism world. Copyright © 2015 Hadjithomas et al.

High absolute basophil count is a powerful independent predictor of inferior overall survival in patients with primary myelofibrosis.

PubMed

Lucijanic, Marko; Livun, Ana; Stoos-Veic, Tajana; Pejsa, Vlatko; Jaksic, Ozren; Cicic, David; Lucijanic, Jelena; Romic, Zeljko; Orehovec, Biserka; Aralica, Gorana; Miletic, Marko; Kusec, Rajko

2018-05-01

To investigate the clinical and prognostic significance of absolute basophil count (ABC) in patients with primary myelofibrosis (PMF). We retrospectively investigated 58 patients with PMF treated in our institution in the period from 2006 to 2017. ABC was obtained in addition to other hematological and clinical parameters. Patients were separated into high and low ABC groups using the Receiver operating characteristic curve analysis. ABC was higher in PMF patients than in healthy controls (P < 0.001). Patients with high ABC had higher white blood cells (P < 0.001), higher red cell distribution width (P = 0.035), higher lactate dehydrogenase (P < 0.001), more frequently had circulatory blasts (P < 0.001), constitutional symptoms (P = 0.030) and massive splenomegaly (P = 0.014). ABC was also positively correlated with absolute monocyte count (AMC) (P < 0.001) and other components of differential blood count. There was no difference in ABC regarding driver mutations or degree of bone marrow fibrosis. Univariately, high ABC was significantly associated with inferior overall survival (hazard ratio (HR) 4.79, P < 0.001). This effect remained statistically significant (HR 4.27, P = 0.009) in a multivariate Cox regression model adjusted for age, gender, Dynamic International Prognostic Scoring System (HR 2.6, P = 0.001) and AMC (HR 8.45, P = 0.002). High ABC reflects higher disease activity and stronger proliferative potential of disease. ABC and AMC independently predict survival and therefore seem to reflect different underlying pathophysiologic processes. Hence, both have a potential for improvement of current prognostic scores. Basophils represent a part of malignant clone in PMF and are associated with unfavorable disease features and poor prognosis which is independent of currently established prognostic scoring system and monocytosis.

Aberrant immunoglobulin class switch recombination and switch translocations in activated B cell-like diffuse large B cell lymphoma.

PubMed

Lenz, Georg; Nagel, Inga; Siebert, Reiner; Roschke, Anna V; Sanger, Warren; Wright, George W; Dave, Sandeep S; Tan, Bruce; Zhao, Hong; Rosenwald, Andreas; Muller-Hermelink, Hans Konrad; Gascoyne, Randy D; Campo, Elias; Jaffe, Elaine S; Smeland, Erlend B; Fisher, Richard I; Kuehl, W Michael; Chan, Wing C; Staudt, Louis M

2007-03-19

To elucidate the mechanisms underlying chromosomal translocations in diffuse large B cell lymphoma (DLBCL), we investigated the nature and extent of immunoglobulin class switch recombination (CSR) in these tumors. We used Southern blotting to detect legitimate and illegitimate CSR events in tumor samples of the activated B cell-like (ABC), germinal center B cell-like (GCB), and primary mediastinal B cell lymphoma (PMBL) subgroups of DLBCL. The frequency of legitimate CSR was lower in ABC DLBCL than in GCB DLBCL and PMBL. In contrast, ABC DLBCL had a higher frequency of internal deletions within the switch mu (Smu) region compared with GCB DLBCL and PMBL. ABC DLBCLs also had frequent deletions within Sgamma and other illegitimate switch recombinations. Sequence analysis revealed ongoing Smu deletions within ABC DLBCL tumor clones, which were accompanied by ongoing duplications and activation-induced cytidine deaminase-dependent somatic mutations. Unexpectedly, short fragments derived from multiple chromosomes were interspersed within Smu in one case. These findings suggest that ABC DLBCLs have abnormalities in the regulation of CSR that could predispose to chromosomal translocations. Accordingly, aberrant switch recombination was responsible for translocations in ABC DLBCLs involving BCL6, MYC, and a novel translocation partner, SPIB.

Interaction of ABC multidrug transporters with anticancer protein kinase inhibitors: substrates and/or inhibitors?

PubMed

Hegedus, Csilla; Ozvegy-Laczka, Csilla; Szakács, Gergely; Sarkadi, Balázs

2009-05-01

Protein kinase inhibitors (PKI) are becoming key agents in modern cancer chemotherapy, and combination of PKIs with classical chemotherapeutic drugs may help to overcome currently untreatable metastatic cancers. Since chemotherapy resistance is a recurrent problem, mechanisms of resistance should be clarified in order to help further drug development. Here we suggest that in addition to PKI resistance based on altered target structures, the active removal of these therapeutic agents by the MDR-ABC transporters should also be considered as a major cause of clinical resistance. We discuss the occurring systemic and cellular mechanisms, which may hamper PKI efficiency, and document the role of selected MDR-ABC transporters in these phenomena through their interactions with these anticancer agents. Moreover, we suggest that PKI interactions with ABC transporters may modulate overall drug metabolism, including the fate of diverse, chemically or target-wise unrelated drugs. These effects are based on multiple forms of MDR-ABC transporter interaction with PKIs, as these compounds may be both substrates and/or inhibitors of an ABC transporter. We propose that these interactions should be carefully considered in clinical application, and a combined MDR-ABC transporter and PKI effect may bring a major advantage in future drug development.

Laboratory investigation of grouted coupler connection details for ABC bridge projects.

DOT National Transportation Integrated Search

2015-08-01

With an ever increasing desire to utilize accelerated bridge construction (ABC) techniques, it is becoming critical that bridge : designers and contractors have confidence in typical details. The Keg Creek Bridge on US 6 in Iowa was a recent ABC exam...

The ABC protein turned chloride channel whose failure causes cystic fibrosis

NASA Astrophysics Data System (ADS)

Gadsby, David C.; Vergani, Paola; Csanády, László

2006-03-01

CFTR chloride channels are encoded by the gene mutated in patients with cystic fibrosis. These channels belong to the superfamily of ABC transporter ATPases. ATP-driven conformational changes, which in other ABC proteins fuel uphill substrate transport across cellular membranes, in CFTR open and close a gate to allow transmembrane flow of anions down their electrochemical gradient. New structural and biochemical information from prokaryotic ABC proteins and functional information from CFTR channels has led to a unifying mechanism explaining those ATP-driven conformational changes.

CREATING AN IPHONE APPLICATION FOR COLLECTING CONTINUOUS ABC DATA

PubMed Central

Whiting, Seth W; Dixon, Mark R

2012-01-01

This paper provides an overview and task analysis for creating a continuous ABC data-collection application using Xcode on a Mac computer. Behavior analysts can program an ABC data collection system, complete with a customized list of target clients, antecedents, behaviors, and consequences to be recorded, and have the data automatically sent to an e-mail account after observations have concluded. Further suggestions are provided to customize the ABC data- collection system for individual preferences and clinical needs. PMID:23060682

Creating an iPhone application for collecting continuous ABC data.

PubMed

Whiting, Seth W; Dixon, Mark R

2012-01-01

This paper provides an overview and task analysis for creating a continuous ABC data-collection application using Xcode on a Mac computer. Behavior analysts can program an ABC data collection system, complete with a customized list of target clients, antecedents, behaviors, and consequences to be recorded, and have the data automatically sent to an e-mail account after observations have concluded. Further suggestions are provided to customize the ABC data- collection system for individual preferences and clinical needs.

ArgR is an essential local transcriptional regulator of the arcABC operon in Streptococcus suis and is crucial for biological fitness in an acidic environment.

PubMed

Fulde, Marcus; Willenborg, Joerg; de Greeff, Astrid; Benga, Laurentiu; Smith, Hilde E; Valentin-Weigand, Peter; Goethe, Ralph

2011-02-01

Streptococcus suis is one of the most important pathogens in pigs and can also cause severe infections in humans. Despite its clinical relevance, very little is known about the factors that contribute to its virulence. Recently, we identified a new putative virulence factor in S. suis, the arginine deiminase system (ADS), an arginine catabolic enzyme system encoded by the arcABC operon, which enables S. suis to survive in an acidic environment. In this study, we focused on ArgR, an ADS-associated regulator belonging to the ArgR/AhrC arginine repressor family. Using an argR knockout strain we were able to show that ArgR is essential for arcABC operon expression and necessary for the biological fitness of S. suis. By cDNA expression microarray analyses and quantitative real-time RT-PCR we found that the arcABC operon is the only gene cluster regulated by ArgR, which is in contrast to the situation in many other bacteria. Reporter gene analysis with gfp under the control of the arcABC promoter demonstrated that ArgR is able to activate the arcABC promoter. Electrophoretic mobility shift assays with fragments of the arcABC promoter and recombinant ArgR, and chromatin immunoprecipitation with antibodies directed against ArgR, revealed that ArgR interacts with the arcABC promoter in vitro and in vivo by binding to a region from -147 to -72 bp upstream of the transcriptional start point. Overall, our results show that in S. suis, ArgR is an essential, system-specific transcriptional regulator of the ADS that interacts directly with the arcABC promoter in vivo.

Transcriptome-Based Identification of ABC Transporters in the Western Tarnished Plant Bug Lygus hesperus

PubMed Central

Hull, J. Joe; Chaney, Kendrick; Geib, Scott M.; Fabrick, Jeffrey A.; Brent, Colin S.; Walsh, Douglas; Lavine, Laura Corley

2014-01-01

ATP-binding cassette (ABC) transporters are a large superfamily of proteins that mediate diverse physiological functions by coupling ATP hydrolysis with substrate transport across lipid membranes. In insects, these proteins play roles in metabolism, development, eye pigmentation, and xenobiotic clearance. While ABC transporters have been extensively studied in vertebrates, less is known concerning this superfamily in insects, particularly hemipteran pests. We used RNA-Seq transcriptome sequencing to identify 65 putative ABC transporter sequences (including 36 full-length sequences) from the eight ABC subfamilies in the western tarnished plant bug (Lygus hesperus), a polyphagous agricultural pest. Phylogenetic analyses revealed clear orthologous relationships with ABC transporters linked to insecticide/xenobiotic clearance and indicated lineage specific expansion of the L. hesperus ABCG and ABCH subfamilies. The transcriptional profile of 13 LhABCs representative of the ABCA, ABCB, ABCC, ABCG, and ABCH subfamilies was examined across L. hesperus development and within sex-specific adult tissues. All of the transcripts were amplified from both reproductively immature and mature adults and all but LhABCA8 were expressed to some degree in eggs. Expression of LhABCA8 was spatially localized to the testis and temporally timed with male reproductive development, suggesting a potential role in sexual maturation and/or spermatozoa protection. Elevated expression of LhABCC5 in Malpighian tubules suggests a possible role in xenobiotic clearance. Our results provide the first transcriptome-wide analysis of ABC transporters in an agriculturally important hemipteran pest and, because ABC transporters are known to be important mediators of insecticidal resistance, will provide the basis for future biochemical and toxicological studies on the role of this protein family in insecticide resistance in Lygus species. PMID:25401762

Targeting receptor-activator of nuclear kappaB ligand in aneurysmal bone cysts: verification of target and therapeutic response.

PubMed

Pelle, Dominic W; Ringler, Jonathan W; Peacock, Jacqueline D; Kampfschulte, Kevin; Scholten, Donald J; Davis, Mary M; Mitchell, Deanna S; Steensma, Matthew R

2014-08-01

Aneurysmal bone cyst (ABC) is a benign tumor of bone presenting as a cystic, expansile lesion in both the axial and appendicular skeleton. Axial lesions demand special consideration, because treatment-related morbidity can be devastating. In similar lesions, such as giant cell tumor of bone (GCTB), the receptor-activator of nuclear kappaB ligand (RANKL)-receptor-activator of nuclear kappaB (RANK) signaling axis is essential to tumor progression. Although ABC and GCTB are distinct entities, they both contain abundant multinucleated giant cells and are osteolytic characteristically. We hypothesize that ABCs express both RANKL and RANK similarly in a cell-type specific manner, and that targeted RANKL therapy will mitigate ABC tumor progression. Cellular expression of RANKL and RANK was determined in freshly harvested ABC samples using laser confocal microscopy. A consistent cell-type-specific pattern was observed: fibroblastlike stromal cells expressed RANKL strongly whereas monocyte/macrophage precursor and multinucleated giant cells expressed RANK. Relative RANKL expression was determined by quantitative real-time polymerase chain reaction in ABC and GCTB tissue samples; no difference in relative expression was observed (P > 0.05). In addition, we review the case of a 5-year-old boy with a large, aggressive sacral ABC. After 3 months of targeted RANKL inhibition with denosumab, magnetic resonance imaging demonstrated tumor shrinkage, bone reconstitution, and healing of a pathologic fracture. Ambulation, and bowel and bladder function were restored at 6 months. Denosumab treatment was well tolerated. Post hoc analysis demonstrated strong RANKL expression in the pretreatment tumor sample. These findings demonstrate that RANKL-RANK signal activation is essential to ABC tumor progression. RANKL-targeted therapy may be an effective alternative to surgery in select ABC presentations. Copyright © 2014 Mosby, Inc. All rights reserved.

SPECT Analysis of Cardiac Perfusion Changes After Whole-Breast/Chest Wall Radiation Therapy With or Without Active Breathing Coordinator: Results of a Randomized Phase 3 Trial

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zellars, Richard, E-mail: zellari@jhmi.edu; Bravo, Paco E.; Tryggestad, Erik

2014-03-15

Purpose: Cardiac muscle perfusion, as determined by single-photon emission computed tomography (SPECT), decreases after breast and/or chest wall (BCW) irradiation. The active breathing coordinator (ABC) enables radiation delivery when the BCW is farther from the heart, thereby decreasing cardiac exposure. We hypothesized that ABC would prevent radiation-induced cardiac toxicity and conducted a randomized controlled trial evaluating myocardial perfusion changes after radiation for left-sided breast cancer with or without ABC. Methods and Materials: Stages I to III left breast cancer patients requiring adjuvant radiation therapy (XRT) were randomized to ABC or No-ABC. Myocardial perfusion was evaluated by SPECT scans (before andmore » 6 months after BCW radiation) using 2 methods: (1) fully automated quantitative polar mapping; and (2) semiquantitative visual assessment. The left ventricle was divided into 20 segments for the polar map and 17 segments for the visual method. Segments were grouped by anatomical rings (apical, mid, basal) or by coronary artery distribution. For the visual method, 2 nuclear medicine physicians, blinded to treatment groups, scored each segment's perfusion. Scores were analyzed with nonparametric tests and linear regression. Results: Between 2006 and 2010, 57 patients were enrolled and 43 were available for analysis. The cohorts were well matched. The apical and left anterior descending coronary artery segments had significant decreases in perfusion on SPECT scans in both ABC and No-ABC cohorts. In unadjusted and adjusted analyses, controlling for pretreatment perfusion score, age, and chemotherapy, ABC was not significantly associated with prevention of perfusion deficits. Conclusions: In this randomized controlled trial, ABC does not appear to prevent radiation-induced cardiac perfusion deficits.« less

Yang-Mills theory and the ABC conjecture

NASA Astrophysics Data System (ADS)

He, Yang-Hui; Hu, Zhi; Probst, Malte; Read, James

2018-05-01

We establish a precise correspondence between the ABC Conjecture and 𝒩 = 4 super-Yang-Mills theory. This is achieved by combining three ingredients: (i) Elkies’ method of mapping ABC-triples to elliptic curves in his demonstration that ABC implies Mordell/Faltings; (ii) an explicit pair of elliptic curve and associated Belyi map given by Khadjavi-Scharaschkin; and (iii) the fact that the bipartite brane-tiling/dimer model for a gauge theory with toric moduli space is a particular dessin d’enfant in the sense of Grothendieck. We explore this correspondence for the highest quality ABC-triples as well as large samples of random triples. The conjecture itself is mapped to a statement about the fundamental domain of the toroidal compactification of the string realization of 𝒩 = 4 SYM.

Compact high order schemes with gradient-direction derivatives for absorbing boundary conditions

NASA Astrophysics Data System (ADS)

Gordon, Dan; Gordon, Rachel; Turkel, Eli

2015-09-01

We consider several compact high order absorbing boundary conditions (ABCs) for the Helmholtz equation in three dimensions. A technique called "the gradient method" (GM) for ABCs is also introduced and combined with the high order ABCs. GM is based on the principle of using directional derivatives in the direction of the wavefront propagation. The new ABCs are used together with the recently introduced compact sixth order finite difference scheme for variable wave numbers. Experiments on problems with known analytic solutions produced very accurate results, demonstrating the efficacy of the high order schemes, particularly when combined with GM. The new ABCs are then applied to the SEG/EAGE Salt model, showing the advantages of the new schemes.

SHAPING THE BROWN DWARF DESERT: PREDICTING THE PRIMORDIAL BROWN DWARF BINARY DISTRIBUTIONS FROM TURBULENT FRAGMENTATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jumper, Peter H.; Fisher, Robert T., E-mail: robert.fisher@umassd.edu

2013-05-20

The formation of brown dwarfs (BDs) poses a key challenge to star formation theory. The observed dearth of nearby ({<=}5 AU) BD companions to solar mass stars, known as the BD desert, as well as the tendency for low-mass binary systems to be more tightly bound than stellar binaries, has been cited as evidence for distinct formation mechanisms for BDs and stars. In this paper, we explore the implications of the minimal hypothesis that BDs in binary systems originate via the same fundamental fragmentation mechanism as stars, within isolated, turbulent giant molecular cloud cores. We demonstrate analytically that the scalingmore » of specific angular momentum with turbulent core mass naturally gives rise to the BD desert, as well as wide BD binary systems. Further, we show that the turbulent core fragmentation model also naturally predicts that very low mass binary and BD/BD systems are more tightly bound than stellar systems. In addition, in order to capture the stochastic variation intrinsic to turbulence, we generate 10{sup 4} model turbulent cores with synthetic turbulent velocity fields to show that the turbulent fragmentation model accommodates a small fraction of binary BDs with wide separations, similar to observations. Indeed, the picture which emerges from the turbulent fragmentation model is that a single fragmentation mechanism may largely shape both stellar and BD binary distributions during formation.« less

The Cost of Library Services: Activity-Based Costing in an Australian Academic Library.

ERIC Educational Resources Information Center

Robinson, Peter; Ellis-Newman, Jennifer

1998-01-01

Explains activity-based costing (ABC), discusses the benefits of ABC to library managers, and describes the steps involved in implementing ABC in an Australian academic library. Discusses the budgeting process in universities, and considers benefits to the library. (Author/LRW)

Effect of SOS-induced levels of imuABC on spontaneous and damage-induced mutagenesis in Caulobacter crescentus.

PubMed

Alves, Ingrid R; Lima-Noronha, Marco A; Silva, Larissa G; Fernández-Silva, Frank S; Freitas, Aline Luiza D; Marques, Marilis V; Galhardo, Rodrigo S

2017-11-01

imuABC (imuAB dnaE2) genes are responsible for SOS-mutagenesis in Caulobacter crescentus and other bacterial species devoid of umuDC. In this work, we have constructed operator-constitutive mutants of the imuABC operon. We used this genetic tool to investigate the effect of SOS-induced levels of these genes upon both spontaneous and damage-induced mutagenesis. We showed that constitutive expression of imuABC does not increase spontaneous or damage-induced mutagenesis, nor increases cellular resistance to DNA-damaging agents. Nevertheless, the presence of the operator-constitutive mutation rescues mutagenesis in a recA background, indicating that imuABC are the only genes required at SOS-induced levels for translesion synthesis (TLS) in C. crescentus. Furthermore, these data also show that TLS mediated by ImuABC does not require RecA, unlike umuDC-dependent mutagenesis in E. coli. Copyright © 2017 Elsevier B.V. All rights reserved.

Effect of steam activation of biochar produced from a giant Miscanthus on copper sorption and toxicity.

PubMed

Shim, Taeyong; Yoo, Jisu; Ryu, Changkook; Park, Yong-Kwon; Jung, Jinho

2015-12-01

This study aims to evaluate the physiochemical properties, sorption characteristics, and toxicity effects of biochar (BC) produced from Miscanthus sacchariflorus via slow pyrolysis at 500°C and its steam activation product (ABC). Although BC has a much lower surface area than ABC (181 and 322m(2)g(-1), respectively), the Cu sorption capacities of BC and ABC are not significantly different (p>0.05). A two-compartment model successfully explains the sorption of BC and ABC as being dominated by fast and slow sorption processes, respectively. In addition, both BC and ABC efficiently eliminate the toxicity of Cu towards Daphnia magna. However, ABC itself induced acute toxicity to D. magna, which is possibly due to increased aromaticity upon steam activation. These findings suggest that activation of BC produced from M. sacchariflorus at a pyrolytic temperature of 500°C may not be appropriate in terms of Cu sorption and toxicity reduction. Copyright © 2015 Elsevier Ltd. All rights reserved.

Evolutionary Trajectories of Entomopathogenic Fungi ABC Transporters.

PubMed

Baral, Bikash

2017-01-01

The ABC protein superfamily-also called traffic ATPases-are energy-dependent ubiquitous proteins, representing one of the crucial and the largest family in the fungal genomes. The ATP-binding cassette endows a characteristic 200-250 amino acids and is omnipresent in all organisms ranging from prokaryotes to eukaryotes. Unlike in bacteria with nutrient import functions, ABC transporters in fungal entomopathogens serve as effective efflux pumps that are largely involved in the shuttle of metabolites across the biological membranes. Thus, the search for ABC proteins may prove of immense importance in elucidating the functional and molecular mechanism at the host-pathogen (insect-fungus) interface. Their sequence homology, domain topology, and functional traits led to the actual identification of nine different families in fungal entomopathogens. Evolutionary relationships within the ABC superfamily are discussed, concentrating on computational approaches for comparative identification of ABC transporters in insect-pathogenic fungi (entomopathogens) with those of animals, plants, and their bacterial orthologs. Ancestors of some fungal candidates have duplicated extensively in some phyla, while others were lost in one lineage or the other, and predictions for the cause of their duplications and/or loss in some phyla are made. ABC transporters of fungal insect-pathogens serve both defensive and offensive functions effective against land-dwelling and ground foraging voracious insects. This study may help to unravel the molecular cascades of ABC proteins to illuminate the means through which insects cope with fungal infection and fungal-related diseases. Copyright © 2017 Elsevier Inc. All rights reserved.

Implication of RuvABC and RecG in homologous recombination in Streptomyces ambofaciens.

PubMed

Hoff, Grégory; Bertrand, Claire; Piotrowski, Emilie; Thibessard, Annabelle; Leblond, Pierre

2017-01-01

Most bacterial organisms rely on homologous recombination to repair DNA double-strand breaks and for the post-replicative repair of DNA single-strand gaps. Homologous recombination can be divided into three steps: (i) a pre-synaptic step in which the DNA 3'-OH ends are processed, (ii) a recA-dependent synaptic step allowing the invasion of an intact copy and the formation of Holliday junctions, and (iii) a post-synaptic step consisting of migration and resolution of these junctions. Currently, little is known about factors involved in homologous recombination, especially for the post-synaptic step. In Escherichia coli, branch migration and resolution are performed by the RuvABC complex, but could also rely on the RecG helicase in a redundant manner. In this study, we show that recG and ruvABC are well-conserved among Streptomyces. ΔruvABC, ΔrecG and ΔruvABC ΔrecG mutant strains were constructed. ΔruvABC ΔrecG is only slightly affected by exposure to DNA damage (UV). We also show that conjugational recombination decreases in the absence of RuvABC and RecG, but that intra-chromosomal recombination is not affected. These data suggest that RuvABC and RecG are indeed involved in homologous recombination in Streptomyces ambofaciens and that alternative factors are able to take over Holliday junction in Streptomyces. Copyright © 2016 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

The Pan-STARRS1 Proper-motion Survey for Young Brown Dwarfs in Nearby Star-forming Regions. I. Taurus Discoveries and a Reddening-free Classification Method for Ultracool Dwarfs

NASA Astrophysics Data System (ADS)

Zhang, Zhoujian; Liu, Michael C.; Best, William M. J.; Magnier, Eugene A.; Aller, Kimberly M.; Chambers, K. C.; Draper, P. W.; Flewelling, H.; Hodapp, K. W.; Kaiser, N.; Kudritzki, R.-P.; Metcalfe, N.; Wainscoat, R. J.; Waters, C.

2018-05-01

We are conducting a proper-motion survey for young brown dwarfs in the Taurus-Auriga molecular cloud based on the Pan-STARRS1 3π Survey. Our search uses multi-band photometry and astrometry to select candidates, and is wider (370 deg2) and deeper (down to ≈3 M Jup) than previous searches. We present here our search methods and spectroscopic follow-up of our high-priority candidates. Since extinction complicates spectral classification, we have developed a new approach using low-resolution (R ≈ 100) near-infrared spectra to quantify reddening-free spectral types, extinctions, and gravity classifications for mid-M to late-L ultracool dwarfs (≲100–3 M Jup in Taurus). We have discovered 25 low-gravity (VL-G) and the first 11 intermediate-gravity (INT-G) substellar (M6–L1) members of Taurus, constituting the largest single increase of Taurus brown dwarfs to date. We have also discovered 1 new Pleiades member and 13 new members of the Perseus OB2 association, including a candidate very wide separation (58 kau) binary. We homogeneously reclassify the spectral types and extinctions of all previously known Taurus brown dwarfs. Altogether our discoveries have thus far increased the substellar census in Taurus by ≈40% and added three more L-type members (≲5–10 M Jup). Most notably, our discoveries reveal an older (>10 Myr) low-mass population in Taurus, in accord with recent studies of the higher-mass stellar members. The mass function appears to differ between the younger and older Taurus populations, possibly due to incompleteness of the older stellar members or different star formation processes.

Effect of β-elemene on the kinetics of intracellular transport of d-luciferin potassium salt (ABC substrate) in doxorubicin-resistant breast cancer cells and the associated molecular mechanism.

PubMed

Tang, Chao-Yuan; Zhu, Li-Xin; Yu, Jian-Dong; Chen, Zhi; Gu, Man-Cang; Mu, Chao-Feng; Liu, Qi; Xiong, Yang

2018-07-30

In order to explore the mechanism of the reversing multidrug resistance (MDR) phenotypes by β-elemene (β-ELE) in doxorubicin (DOX)-resistant breast cancer cells (MCF-7/DOX), both the functionality and quantity of the ABC transporters in MCF-7/DOX were studied. Bioluminescence imaging (BLI) was used to study the efflux of d-luciferin potassium salt, the substrate of ATP-binding cassette transporters (ABC transporters), in MCF-7/DOX cells treated by β-ELE. At the same time three major ABC transport proteins and genes-related MDR, P-glycoprotein (P-gp, ABCB1) and multidrug resistance-associated protein 1 (MRP, ABCC1) as well as breast cancer resistance protein (BCRP, ABCG2) were analyzed by q-PCR and Western blot. To investigate the efflux functionality of ABC transporters, MCF-7/DOX Fluc cell line with stably-overexpressed luciferase was established. BLI was then used to real-time monitor the efflux kinetics of d-luciferin potassium salt before and after MCF-7/DOX Fluc cells being treated with β-ELE or not. The results showed that the efflux of d-luciferin potassium salt from MCF-7/DOX Fluc was lessened when pretreated with β-ELE, which means that β-ELE may dampen the functionality of ABC transporters, thus decrease the efflux of d-fluorescein potassium or other chemotherapies which also serve as the substrates of ABC transporters. As the effect of β-ELE on the expression of ABC transporters, the results of q-PCR and Western blot showed that gene and protein expression of ABC transporters such as P-gp, MRP, and BCRP were down-regulated after the treatment of β-ELE. To verify the efficacy of β-ELE on reversing MDR, MCF-7/DOX cells were treated with the combination of DOX and β-ELE. MTT assay showed that β-ELE increased the inhibitory effect of DOX on the proliferation of MCF-7/DOX, and the IC 50 of the combination group was much lower than that of the single DOX or β-ELE treatment. In all, β-ELE may reverse MDR through the substrates of ABC transporters by two ways, to lessen the ABC protein efflux by weakening their functionality, or to reduce the quantity of ABC gene and protein expression. Copyright © 2018. Published by Elsevier B.V.

Is there continued evidence for an association between abacavir usage and myocardial infarction risk in individuals with HIV? A cohort collaboration.

PubMed

Sabin, Caroline A; Reiss, Peter; Ryom, Lene; Phillips, Andrew N; Weber, Rainer; Law, Matthew; Fontas, Eric; Mocroft, Amanda; de Wit, Stephane; Smith, Colette; Dabis, Francois; d'Arminio Monforte, Antonella; El-Sadr, Wafaa; Lundgren, Jens D

2016-03-31

In March 2008, the D:A:D study published results demonstrating an increased risk of myocardial infarction (MI) for patients on abacavir (ABC). We describe changes to the use of ABC since this date, and investigate changes to the association between ABC and MI with subsequent follow-up. A total of 49,717 D:A:D participants were followed from study entry until the first of an MI, death, 1 February 2013 or 6 months after last visit. Associations between a person's 10-year cardiovascular disease (CVD) risk and the likelihood of initiating or discontinuing ABC were assessed using multivariable logistic/Poisson regression. Poisson regression was used to assess the association between current ABC use and MI risk, adjusting for potential confounders, and a test of interaction was performed to assess whether the association had changed in the post-March 2008 period. Use of ABC increased from 10 % of the cohort in 2000 to 20 % in 2008, before stabilising at 18-19 %. Increases in use pre-March 2008, and subsequent decreases, were greatest in those at moderate and high CVD risk. Post-March 2008, those on ABC at moderate/high CVD risk were more likely to discontinue ABC than those at low/unknown CVD risk, regardless of viral load (≤1,000 copies/ml: relative rate 1.49 [95 % confidence interval 1.34-1.65]; >1,000 copies/ml: 1.23 [1.02-1.48]); no such associations were seen pre-March 2008. There was some evidence that antiretroviral therapy (ART)-naïve persons at moderate/high CVD risk post-March 2008 were less likely to initiate ABC than those at low/unknown CVD risk (odds ratio 0.74 [0.48-1.13]). By 1 February 2013, 941 MI events had occurred in 367,559 person-years. Current ABC use was associated with a 98 % increase in MI rate (RR 1.98 [1.72-2.29]) with no difference in the pre- (1.97 [1.68-2.33]) or post- (1.97 [1.43-2.72]) March 2008 periods (interaction P = 0.74). Despite a reduction in the channelling of ABC for patients at higher CVD risk since 2008, we continue to observe an association between ABC use and MI risk. Whilst confounding cannot be fully ruled out, this further diminishes channelling bias as an explanation for our findings.

ARC-1969-A-25541

NASA Image and Video Library

1959-08-04

FLIGHT RESEARCH BRANCH PERSONNEL-1959. FRONT ROW: George Rathert, Stu Brown, Norm McFadden, Howard Turner, Gus Brunner, Venia McCloud, Violet Shaw, Kay Rizzi, Yvonne Settle, Genevieve Ziegler, Anita Palmer, Grace Carpenter, Evelyn Olson. SECOND ROW: Bill Triplett, Alan Faye, Dick Bray, Seth Anderson, Steve Belsley, Hervey Quigley, Hank Cole, Elwood Stewart, Don Higdon, Maurie White, Dorothea Wilkinson, Dick Vomaske, Stew Rolls, Mel Sadoff, Mary Thompson, Brent Creer. BACK ROW: Ron Gerdes, Joe Douvillier, John Stewart, Rod Wingrove, Walter McNeill. Note: Used in publication in Flight Research at Ames; 57 Years of Development and Validation of Aeronautical Technology NASA SP-1998-3300 fig 89

On the existence of a solution to a quasilinear elliptic system of the Lane, Emden and Fowler type

NASA Astrophysics Data System (ADS)

Covei, Dragoş-Pǎtru

2012-11-01

In this article, we give an algorithm to obtain the existence of a solution for a quasilinear elliptic system. Our result is new and is based on a recent work of [R.J. Biezuner, J. Brown, G. Ercole and E.M. Martins, Computing the first eigenpair of the p-Laplacian via inverse iteration of sublinear supersolutions, J. Sci. Computation, 2011]. Such problems appear in boundary layer phenomena for viscous fluids, the equilibrium configuration of mass in a spherical cloud of gas, thermal explosion as well as in others applications.

Flooding of the Taz, Pur, and Yenisey Rivers, Russia

NASA Technical Reports Server (NTRS)

2002-01-01

Each spring and summer, rivers across Siberia experience flooding as the waters in the south begin to melt and run before the ice has retreated from the northern limits. The ice causes jams which are sometimes loosened up using explosives. This pair of MODIS images from June 18, 2002, shows flooding on the Pur (left), Taz (center), and Yenisey (right) Rivers in central Siberia. In the false-color image, ice and snow are red, clouds are white, water is black, and vegetation is green. Bare soil is brown. Credit: Jacques Descloitres, MODIS Land Rapid Response Team, NASA/GSFC

A new species of Lactarius (subgenus Gerardii) from two relict Fagus grandifolia var. mexicana populations in Mexican montane cloud forests.

PubMed

Montoya, Leticia; Bandala, Victor Manuel; Haug, Ingeborg; Stubbe, Dirk

2012-01-01

A new milkcap species, Lactarius fuscomarginatus, was found in the subtropical region of central Veracruz (eastern Mexico) associated with two relict populations of Fagus grandifolia var. mexicana. The species is characterized macroscopically by its dark pileus and stipe and by its distant and whitish lamellae with blackish to blackish brown edges. A molecular phylogenetic analyses based on ITS and LSU nucDNA sequences confirms the delimitation of this new taxon and places L. fuscomarginatus in subgenus Gerardii. A detailed morphological comparison is given with similar species.

76 FR 42710 - Statement of Organization, Functions, and Delegations of Authority

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-19

..., Functions, and Delegations of Authority Part A, Office of the Secretary, Statement of Organization, Functions, and Delegations of Authority for the Department of Health and Human Services is being amended at... (ABC1). V. Under Chapter ABC, Section ABC.20 Functions, 2nd paragraph, replace ``State, tribal, and...

ABCs of Being Smart: S Is for Supporting

ERIC Educational Resources Information Center

Foster, Joanne

2014-01-01

Joanne Foster's article "R We There Yet?" was first published in "Parenting for High Potential" ("PHP") in 2006, which became the springboard for the "ABCs of Being Smart" series of columns. At that time, Foster invited "PHP" readers to think about their own versions of the "ABCs of Being…

75 FR 6706 - In the Matter of Certain Foldable Stools; Notice of Commission Decision Not To Review an Initial...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-10

... Distributing and Crate & Barrel with ``LTD Commodities, LLC, d/b/a abc Distributing'' and ``Euromarket Designs... of investigation named several respondents including the following: abc Distributing Inc. (``abc Distributing'') of Bannockburn, Illinois; Crate & Barrel, Inc. (``Crate & Barrel'') of Northbrook, Illinois...

ABC's of Construction. Final Report.

ERIC Educational Resources Information Center

Greater Baton Rouge Chamber of Commerce, LA.

The ABC's of Construction project was a demonstration project designed to integrate basic skills training with an industry-developed vocational-craft training program. The program was located at the central training facility of the Pelican Chapter of Associated Builders and Contractors (ABC), an organization made up of nearly 300 member companies…

The ABCs of Activity-Based Costing: A Cost Containment and Reallocation Tool.

ERIC Educational Resources Information Center

Turk, Frederick J.

1992-01-01

This article describes activity-based costing (ABC) and how this tool may help management understand the costs of major activities and identify possible alternatives. Also discussed are the traditional costing systems used by higher education and ways of applying ABC to higher education. (GLR)

Do You Know Your ABC?

ERIC Educational Resources Information Center

Neale, Claire

2013-01-01

Within primary schools, the core subjects of literacy and numeracy are highly regarded, and rightly so, as children need to learn to read, write and be numerically literate. This means that all children learn their ABCs at an early age, But, what about the "other ABC"--"Airway, Breathing and Circulation?" Accidents and medical…

Meta-Analysis of the Validation Studies of the Kaufman Assessment Battery for Children.

ERIC Educational Resources Information Center

Ochieng, Charles O.

2003-01-01

Conducted a meta-analysis of the Kaufman Assessment Battery for Children (K-ABC) to ascertain the numbers of factors in the mental processing subtest of the K-ABC. Analyses yielded sequential and simultaneous processing factors, suggesting that the original K-ABC theory was not supported. (SLD)

GPS-ABC radiated chamber testing overview and results : GPS-ABC Workshop VI : RTCA Washington, DC, March 30, 2017.

DOT National Transportation Integrated Search

2017-03-30

This presentation, which was given during the GPS-ABC Workshop VI in Washington, DC on March 30, 2017 details the authors' radiated testing protocols and results. GPS receiver testing was carried out April 25-29, 2016 at the Army : Research Laborator...

fbpABC gene cluster in Neisseria meningitidis is transcribed as an operon.

PubMed

Khun, H H; Deved, V; Wong, H; Lee, B C

2000-12-01

The neisserial fbpABC locus has been proposed to constitute a single transcriptional unit. To confirm this operonic arrangement, transcription assays using reverse transcriptase PCR amplification were conducted with Neisseria meningitidis. The presence of fbpAB and fbpBC transcripts obtained by priming cDNA synthesis with an fbpC-sequence-specific oligonucleotide indicates that fbpABC is organized as a single expression unit. The ratio of fbpA to fbpABC mRNA was approximately between 10- to 20-fold, as determined by real-time quantitative PCR.

fbpABC Gene Cluster in Neisseria meningitidis Is Transcribed as an Operon

PubMed Central

Khun, Heng H.; Deved, Vinay; Wong, Howard; Lee, B. Craig

2000-01-01

The neisserial fbpABC locus has been proposed to constitute a single transcriptional unit. To confirm this operonic arrangement, transcription assays using reverse transcriptase PCR amplification were conducted with Neisseria meningitidis. The presence of fbpAB and fbpBC transcripts obtained by priming cDNA synthesis with an fbpC-sequence-specific oligonucleotide indicates that fbpABC is organized as a single expression unit. The ratio of fbpA to fbpABC mRNA was approximately between 10- to 20-fold, as determined by real-time quantitative PCR. PMID:11083849

Placental ABC Transporters: Biological Impact and Pharmaceutical Significance.

PubMed

Joshi, Anand A; Vaidya, Soniya S; St-Pierre, Marie V; Mikheev, Andrei M; Desino, Kelly E; Nyandege, Abner N; Audus, Kenneth L; Unadkat, Jashvant D; Gerk, Phillip M

2016-12-01

The human placenta fulfills a variety of essential functions during prenatal life. Several ABC transporters are expressed in the human placenta, where they play a role in the transport of endogenous compounds and may protect the fetus from exogenous compounds such as therapeutic agents, drugs of abuse, and other xenobiotics. To date, considerable progress has been made toward understanding ABC transporters in the placenta. Recent studies on the expression and functional activities are discussed. This review discusses the placental expression and functional roles of several members of ABC transporter subfamilies B, C, and G including MDR1/P-glycoprotein, the MRPs, and BCRP, respectively. Since placental ABC transporters modulate fetal exposure to various compounds, an understanding of their functional and regulatory mechanisms will lead to more optimal medication use when necessary in pregnancy.

Placental ABC Transporters: Biological Impact and Pharmaceutical Significance

PubMed Central

Joshi, Anand A.; Vaidya, Soniya S.; St-Pierre, Marie V.; Mikheev, Andrei M.; Desino, Kelly E.; Nyandege, Abner N.; Audus, Kenneth L.; Unadkat, Jashvant D.; Gerk, Phillip M.

2017-01-01

The human placenta fulfills a variety of essential functions during prenatal life. Several ABC transporters are expressed in the human placenta, where they play a role in the transport of endogenous compounds and may protect the fetus from exogenous compounds such as therapeutic agents, drugs of abuse, and other xenobiotics. To date, considerable progress has been made toward understanding ABC transporters in the placenta. Recent studies on the expression and functional activities are discussed. This review discusses the placental expression and functional roles of several members of ABC transporter subfamilies B, C, and G including MDR1/P-glycoprotein, the MRPs, and BCRP, respectively. Since placental ABC transporters modulate fetal exposure to various compounds, an understanding of their functional and regulatory mechanisms will lead to more optimal medication use when necessary in pregnancy. PMID:27644937

Purification and characterization of chondroitinase ABC from Acinetobacter sp. C26.

PubMed

Zhu, Changliang; Zhang, Jingliang; Zhang, Jing; Jiang, Yanhui; Shen, Zhaopeng; Guan, Huashi; Jiang, Xiaolu

2017-02-01

An extracellular chondroitinase ABC (ChSase ABC, EC 4.2.2.4) produced by cultivating Acinetobacter sp. C26, was purified to homogeneity from the supernatant by ammonium sulfate fractionation, Q-Sepharose Fast Flow and Sephadex G-100 chromatography. The 76kDa enzyme was purified 48.09-fold to homogeneity with specific activity of 348.64U/mg, Using the chondroitin sulfate A (CS-A) as substrate, the maximal reaction rate (Vmax) and Michaelis-Menten constant (Km) of ChSase ABC were found to be 10.471μmol/min/ml and 0.105mg/ml, respectively. The enzyme showed the highest activity at the optimal conditions of pH 6.0 and 42 ∘C, respectively. This enzyme was stable at pH 5-10, 5-9 and 5-7 at 4°C, 37°C and 42°C, respectively. Investigation about thermal stability of ChSase ABC displayed that it was stable at 37°C. ChSase ABC activity was increased in presence of Na + , K + , Mn 2+ , 1,10-phenanthrolin and strongly inhibited by Cu 2+ , Hg 2+ , Al 3+ and SDS. These properties suggested that ChSase ABC from Acinetobacter sp. C26 bring promising prospects in medical and industry applications. Copyright © 2016 Elsevier B.V. All rights reserved.

The ABC transporter Rv1272c of Mycobacterium tuberculosis enhances the import of long-chain fatty acids in Escherichia coli.

PubMed

Martin, Audrey; Daniel, Jaiyanth

2018-02-05

Mycobacterium tuberculosis (Mtb), which causes tuberculosis, is capable of accumulating triacylglycerol (TAG) by utilizing fatty acids from host cells. ATP-binding cassette (ABC) transporters are involved in transport processes in all organisms. Among the classical ABC transporters in Mtb none have been implicated in fatty acid import. Since the transport of fatty acids from the host cell is important for dormancy-associated TAG synthesis in the pathogen, mycobacterial ABC transporter(s) could potentially be involved in this process. Based on sequence identities with a bacterial ABC transporter that mediates fatty acid import for TAG synthesis, we identified Rv1272c, a hitherto uncharacterized ABC-transporter in Mtb that also shows sequence identities with a plant ABC transporter involved in fatty acid transport. We expressed Rv1272c in E. coli and show that it enhances the import of radiolabeled fatty acids. We also show that Rv1272c causes a significant increase in the metabolic incorporation of radiolabeled long-chain fatty acids into cardiolipin, a tetra-acylated phospholipid, and phosphatidylglycerol in E. coli. This is the first report on the function of Rv1272c showing that it displays a long-chain fatty acid transport function. Copyright © 2018 Elsevier Inc. All rights reserved.

Abc Amino Acids: Design, Synthesis, and Properties of New Photoelastic Amino Acids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Standaert, Robert F; Park, Dr Seung Bum

2006-01-01

Photoisomerizable amino acids provide a direct avenue to the experimental manipulation of bioactive polypeptides, potentially allowing real-time, remote control of biological systems and enabling useful applications in nanobiotechnology. Herein, we report a new class of photoisomerizable amino acids intended to cause pronounced expansion and contraction in the polypeptide backbone, i.e., to be photoelastic. These compounds, termed Abc amino acids, employ a photoisomerizable azobiphenyl chromophore to control the relative disposition of aminomethyl and carboxyl substituents. Molecular modeling of nine Abc isomers led to the identification of one with particularly attractive properties, including the ability to induce contractions up to 13A inmore » the backbone upon transa?cis photoisomerization. This isomer, designated mpAbc, has substituents at meta and para positions on the inner (azo-linked) and outer rings, respectively. An efficient synthesis of Fmoc-protected mpAbc was executed in which the biaryl components were formed via Suzuki couplings and the azo linkage was formed via amine/nitroso condensation; protected forms of three other Abc isomers were prepared similarly. A decapeptide incorporating mpAbc was synthesized by conventional solid-phase methods and displayed characteristic azobenzene photochemical behavior with optimal conversion to the cis isomer at 360 nm and a thermal cisa?trans half life of 100 min. at 80 AoC.« less

Exoplanet modelling with the Met Office Unified Model

NASA Astrophysics Data System (ADS)

Boutle, Ian; Lines, Stefan; Mayne, Nathan; Lee, Graham; Helling, Christiane; Drummond, Ben; Manners, James; Goyal, Jayesh; Lambert, Hugo; Acreman, David; Earnshaw, Paul; Amundsen, David; Baraffe, Isabelle

2017-04-01

This talk will present an overview of work being done to adapt the Unified Model, one of the most sophisticated weather and climate models of this planet, into a flexible planet simulator for use in the study of any exoplanet. We will focus on two current projects: Clouds in hot Jupiter atmospheres - recent HST observations have revealed a continuum in atmospheric composition from cloudy to clear skies. The presence of clouds is inferred from a grey opacity in the near-IR that mutes key absorption features in the transmission spectra. Unlike the L-T Brown Dwarf sequence, this transition does not correlate well with equilibrium temperature, suggesting that a cloud formation scheme more comprehensive than simply considering the condensation temperature needed for homogenous cloud growth, is required. In our work, we conduct 3D simulations of cloud nucleation, growth, advection, evaporation and gravitational settling in the atmospheres of HD209458b and HD189733 using the kinetic and mixed-grain cloud formation code DIHRT, coupled to the Unified Model. We explore cloud composition, vertical structure and particle sizes, as well as highlighting the importance of the strong atmospheric dynamics seen in tidally locked hot Jupiters on the evolution and distribution of the cloud. Climate of Proxima B - we present results of simulations of the climate of the newly discovered planet Proxima Centauri B, examining the responses of both an `Earth-like' atmosphere and simplified nitrogen and trace carbon dioxide atmosphere to the radiation likely received. Overall, our results are in agreement with previous studies in suggesting Proxima Centauri B may well have surface temperatures conducive to the presence of liquid water. Moreover, we have expanded the parameter regime over which the planet may support liquid water to higher values of eccentricity and lower incident fluxes, guided by observational constraints. This increased parameter space arises because of the low sensitivity of the planet to changes in stellar flux, a consequence of the stellar spectrum and orbital configuration. Finally, we have produced high resolution planetary emission and reflectance spectra, and highlight signatures of gases vital to the evolution of life on Earth (oxygen, ozone and carbon dioxide).

Sahara Desert, Sudan, Northeast Africa as seen from STS-62

NASA Image and Video Library

1994-03-05

STS062-151-182Z (4-18 March 1994) --- This east-looking view shows most of the east-west extent of the country of Sudan. The foreground shows a vegetation-less and almost uninhabited region of northwest Sudan. The rich earth colors are ancient soils (browner and redder tones), a concentrated mass of what may be volcanic cinder cones (dark brown dots - center) and dune and younger river sediments (yellows). The photo would have been difficult to locate had it not been for two recognizable features in the background: a visually well-known inselberg ("island mountain" -- top center) on a large west-bank tributary of the White Nile; and the confluence of the Blue and White Nile's, with the great cotton developments of the Gezira Scheme between them (top left). The Red Sea coast is almost obscured by a dust cloud but can be discerned running across the top of the picture. The clouds at top may be developing over the coastal ranges of Saudi Arabia beyond the Red Sea.

Molecular and mass spectroscopic analysis of isotopically labeled organic residues

NASA Technical Reports Server (NTRS)

Mendoza-Gomez, Celia X.; Greenberg, J. Mayo; Mccain, P.; Ferris, J. P.; Briggs, R.; Degroot, M. S.; Schutte, Willem A.

1989-01-01

Experimental studies aimed at understanding the evolution of complex organic molecules on interstellar grains were performed. The photolysis of frozen gas mixtures of various compositions containing H2O, CO, NH3, and CH4 was studied. These species were chosen because of their astrophysical importance as deducted from observational as well as theoretical studies of ice mantles on interstellar grains. These ultraviolet photolyzed ices were warmed up in order to produce refractory organic molecules like the ones formed in molecular clouds when the icy mantles are being irradiated and warmed up either by a nearby stellar source or impulsive heating. The laboratory studies give estimates of the efficiency of production of such organic material under interstellar conditions. It is shown that the gradual carbonization of organic mantles in the diffuse cloud phase leads to higher and higher visual absorptivity - yellow residues become brown in the laboratory. The obtained results can be applied to explaining the organic components of comets and their relevance to the origin of life.

The impact of active breathing control on internal mammary lymph node coverage and normal tissue exposure in breast cancer patients planned for left-sided postmastectomy radiation therapy.

PubMed

Barry, Aisling; Rock, Kathy; Sole, Claudio; Rahman, Mohammad; Pintilie, Melania; Lee, Grace; Fyles, Anthony; Koch, C Anne

The purpose of this study was to evaluate the impact of the active breathing control (ABC) technique on IMN coverage and organs at risk in patients planned for postmastectomy radiation therapy (PMRT), with the inclusion of the internal mammary lymph nodes (IMNs). The effect of body mass index (BMI) on recorded dosimetric parameters was examined in the same patient cohort. Fifty left-sided postmastectomy patients with breast cancer who underwent free-breathing (FB) and ABC-Elekta CT simulation scans were selected at random from an institutional breast cancer database between 2008 and 2014. The ABC plans were directly compared with FB plans from the same patient. The IMN planning target volume coverage met dosimetric criteria for coverage of receiving more than 90% of the prescribed dose (V90) >90%, although it decreased with ABC compared with FB (94.5% vs 98%, P < .001). Overall, ABC significantly reduced doses to all measured heart and left anterior descending coronary artery parameters, ipsilateral lung V20, and mean lung dose compared with FB (P < .001). There was no difference seen between the ABC and FB plans with respect to the dose to contralateral lung or contralateral breast. There was no correlation identified between BMI and any of the dosimetric parameters recorded from the ABC and FB plans. Our results suggest that ABC reduces IMN coverage in left-sided breast cancer patients planned for PMRT; however, dosimetric criteria for IMN coverage were still met, suggesting that this is not likely to be clinically significant. ABC led to significant sparing of organs at risk compared with FB conditions and was not affected by BMI. Collectively, the results support the use of ABC for breast cancer patients undergoing left-sided PMRT requiring regional nodal irradiation that includes the IMNs. Further prospective clinical studies are required to determine the impact of these results on late normal tissue effects. Crown Copyright © 2016. Published by Elsevier Inc. All rights reserved.

ATP-binding cassette transporters in reproduction: a new frontier

PubMed Central

Bloise, E.; Ortiga-Carvalho, T.M.; Reis, F.M.; Lye, S.J.; Gibb, W.; Matthews, S.G.

2016-01-01

BACKGROUND The transmembrane ATP-binding cassette (ABC) transporters actively efflux an array of clinically relevant compounds across biological barriers, and modulate biodistribution of many physiological and pharmacological factors. To date, over 48 ABC transporters have been identified and shown to be directly and indirectly involved in peri-implantation events and fetal/placental development. They efflux cholesterol, steroid hormones, vitamins, cytokines, chemokines, prostaglandins, diverse xenobiotics and environmental toxins, playing a critical role in regulating drug disposition, immunological responses and lipid trafficking, as well as preventing fetal accumulation of drugs and environmental toxins. METHODS This review examines ABC transporters as important mediators of placental barrier functions and key reproductive processes. Expression, localization and function of all identified ABC transporters were systematically reviewed using PubMed and Google Scholar websites to identify relevant studies examining ABC transporters in reproductive tissues in physiological and pathophysiological states. Only reports written in English were incorporated with no restriction on year of publication. While a major focus has been placed on the human, extensive evidence from animal studies is utilized to describe current understanding of the regulation and function of ABC transporters relevant to human reproduction. RESULTS ABC transporters are modulators of steroidogenesis, fertilization, implantation, nutrient transport and immunological responses, and function as ‘gatekeepers’ at various barrier sites (i.e. blood-testes barrier and placenta) against potentially harmful xenobiotic factors, including drugs and environmental toxins. These roles appear to be species dependent and change as a function of gestation and development. The best-described ABC transporters in reproductive tissues (primarily in the placenta) are the multidrug transporters p-glycoprotein and breast cancer-related protein, the multidrug resistance proteins 1 through 5 and the cholesterol transporters ABCA1 and ABCG1. CONCLUSIONS The ABC transporters have various roles across multiple reproductive tissues. Knowledge of efflux direction, tissue distribution, substrate specificity and regulation of the ABC transporters in the placenta and other reproductive tissues is rapidly expanding. This will allow better understanding of the disposition of specific substrates within reproductive tissues, and facilitate development of novel treatments for reproductive disorders as well as improved approaches to protecting the developing fetus. PMID:26545808

Long-term bleeding risk prediction in 'real world' patients with atrial fibrillation: Comparison of the HAS-BLED and ABC-Bleeding risk scores. The Murcia Atrial Fibrillation Project.

PubMed

Esteve-Pastor, María Asunción; Rivera-Caravaca, José Miguel; Roldan, Vanessa; Vicente, Vicente; Valdés, Mariano; Marín, Francisco; Lip, Gregory Y H

2017-10-05

Risk scores in patients with atrial fibrillation (AF) based on clinical factors alone generally have only modest predictive value for predicting high risk patients that sustain events. Biomarkers might be an attractive prognostic tool to improve bleeding risk prediction. The new ABC-Bleeding score performed better than HAS-BLED score in a clinical trial cohort but has not been externally validated. The aim of this study was to analyze the predictive performance of the ABC-Bleeding score compared to HAS-BLED score in an independent "real-world" anticoagulated AF patients with long-term follow-up. We enrolled 1,120 patients stable on vitamin K antagonist treatment. The HAS-BLED and ABC-Bleeding scores were quantified. Predictive values were compared by c-indexes, IDI, NRI, as well as decision curve analysis (DCA). Median HAS-BLED score was 2 (IQR 2-3) and median ABC-Bleeding was 16.5 (IQR 14.3-18.6). After 6.5 years of follow-up, 207 (2.84 %/year) patients had major bleeding events, of which 65 (0.89 %/year) had intracranial haemorrhage (ICH) and 85 (1.17 %/year) had gastrointestinal bleeding events (GIB). The c-index of HAS-BLED was significantly higher than ABC-Bleeding for major bleeding (0.583 vs 0.518; p=0.025), GIB (0.596 vs 0.519; p=0.017) and for the composite of ICH-GIB (0.593 vs 0.527; p=0.030). NRI showed a significant negative reclassification for major bleeding and for the composite of ICH-GIB with the ABC-Bleeding score compared to HAS-BLED. Using DCAs, the use of HAS-BLED score gave an approximate net benefit of 4 % over the ABC-Bleeding score. In conclusion, in the first "real-world" validation of the ABC-Bleeding score, HAS-BLED performed significantly better than the ABC-Bleeding score in predicting major bleeding, GIB and the composite of GIB and ICH.

A PhoPQ-Regulated ABC Transporter System Exports Tetracycline in Pseudomonas aeruginosa.

PubMed

Chen, Lin; Duan, Kangmin

2016-05-01

Pseudomonas aeruginosa is an important human pathogen whose infections are difficult to treat due to its high intrinsic resistance to many antibiotics. Here, we show that the disruption of PA4456, encoding the ATP binding component of a putative ATP-binding cassette (ABC) transporter, increased the bacterium's susceptible to tetracycline and other antibiotics or toxic chemicals. Fluorescence spectroscopy and antibiotic accumulation tests showed that the interruption of the ABC transporter caused increased intracellular accumulation of tetracycline, demonstrating a role of the ABC transporter in tetracycline expulsion. Site-directed mutagenesis proved that the conserved residues of E170 in the Walker B motif and H203 in the H-loop, which are important for ATP hydrolysis, were essential for the function of PA4456. Through a genome-wide search, the PhoPQ two-component system was identified as a regulator of the computationally predicted PA4456-4452 operon that encodes the ABC transporter system. A >5-fold increase of the expression of this operon was observed in the phoQ mutant. The results obtained also show that the expression of the phzA1B1C1D1E1 operon and the production of pyocyanin were significantly higher in the ABC transporter mutant, signifying a connection between the ABC transporter and pyocyanin production. These results indicated that the PhoPQ-regulated ABC transporter is associated with intrinsic resistance to antibiotics and other adverse compounds in P. aeruginosa, probably by extruding them out of the cell. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

TaABC1, a member of the activity of bc1 complex protein kinase family from common wheat, confers enhanced tolerance to abiotic stresses in Arabidopsis

PubMed Central

Wang, Caixiang; Jing, Ruilian; Mao, Xinguo; Chang, Xiaoping; Li, Ang

2011-01-01

Abiotic stresses such as drought, salinity, and low temperature have drastic effects on plant growth and development. However, the molecular mechanisms regulating biochemical and physiological changes in response to stresses are not well understood. Protein kinases are major signal transduction factors among the reported molecular mechanisms mediating acclimation to environmental changes. Protein kinase ABC1 (activity of bc1 complex) is involved in regulating coenzyme Q biosynthesis in mitochondria in yeast (Saccharomyces cersvisiae), and in balancing oxidative stress in chloroplasts in Arabidopsis thaliana. In the current study, TaABC1 (Triticum aestivum L. activity of bc1 complex) protein kinase was localized to the cell membrane, cytoplasm, and nucleus. The effects of overexpressing TaABC1 in transgenic Arabidopsis plants on responses to drought, salt, and cold stress were further investigated. Transgenic Arabidopsis overexpressing the TaABC1 protein showed lower water loss and higher osmotic potential, photochemistry efficiency, and chlorophyll content, while cell membrane stability and controlled reactive oxygen species homeostasis were maintained. In addition, overexpression of TaABC1 increased the expression of stress-responsive genes, such as DREB1A, DREB2A, RD29A, ABF3, KIN1, CBF1, LEA, and P5CS, detected by real-time PCR analysis. The results suggest that TaABC1 overexpression enhances drought, salt, and cold stress tolerance in Arabidopsis, and imply that TaABC1 may act as a regulatory factor involved in a multiple stress response pathways. PMID:21115661

Simulation-based estimation of mean and standard deviation for meta-analysis via Approximate Bayesian Computation (ABC).

PubMed

Kwon, Deukwoo; Reis, Isildinha M

2015-08-12

When conducting a meta-analysis of a continuous outcome, estimated means and standard deviations from the selected studies are required in order to obtain an overall estimate of the mean effect and its confidence interval. If these quantities are not directly reported in the publications, they must be estimated from other reported summary statistics, such as the median, the minimum, the maximum, and quartiles. We propose a simulation-based estimation approach using the Approximate Bayesian Computation (ABC) technique for estimating mean and standard deviation based on various sets of summary statistics found in published studies. We conduct a simulation study to compare the proposed ABC method with the existing methods of Hozo et al. (2005), Bland (2015), and Wan et al. (2014). In the estimation of the standard deviation, our ABC method performs better than the other methods when data are generated from skewed or heavy-tailed distributions. The corresponding average relative error (ARE) approaches zero as sample size increases. In data generated from the normal distribution, our ABC performs well. However, the Wan et al. method is best for estimating standard deviation under normal distribution. In the estimation of the mean, our ABC method is best regardless of assumed distribution. ABC is a flexible method for estimating the study-specific mean and standard deviation for meta-analysis, especially with underlying skewed or heavy-tailed distributions. The ABC method can be applied using other reported summary statistics such as the posterior mean and 95 % credible interval when Bayesian analysis has been employed.

The feoABC Locus of Yersinia pestis Likely Has Two Promoters Causing Unique Iron Regulation

PubMed Central

O'Connor, Lauren; Fetherston, Jacqueline D.; Perry, Robert D.

2017-01-01

The FeoABC ferrous transporter is a wide-spread bacterial system. While the feoABC locus is regulated by a number of factors in the bacteria studied, we have previously found that regulation of feoABC in Yersinia pestis appears to be unique. None of the non-iron responsive transcriptional regulators that control expression of feoABC in other bacteria do so in Y. pestis. Another unique factor is the iron and Fur regulation of the Y. pestis feoABC locus occurs during microaerobic but not aerobic growth. Here we show that this unique iron-regulation is not due to a unique aspect of the Y. pestis Fur protein but to DNA sequences that regulate transcription. We have used truncations, alterations, and deletions of the feoA::lacZ reporter to assess the mechanism behind the failure of iron to repress transcription under aerobic conditions. These studies plus EMSAs and DNA sequence analysis have led to our proposal that the feoABC locus has two promoters: an upstream P1 promoter whose expression is relatively iron-independent but repressed under microaerobic conditions and the known downstream Fur-regulated P2 promoter. In addition, we have identified two regions that bind Y. pestis protein(s), although we have not identified these protein(s) or their function. Finally we used iron uptake assays to demonstrate that both FeoABC and YfeABCD transport ferrous iron in an energy-dependent manner and also use ferric iron as a substrate for uptake. PMID:28785546

A Manual for Implementation of ABC Video Duplication Projects.

ERIC Educational Resources Information Center

Hill, Joseph, Ed.

The ABC (Appalachian BOCES Consortium) consists of 10 BOCES (Boards of Cooperative Educational Services) which serve the 14 southern counties of New York State designated as Appalachia. Each year since 1974, the ABC has participated in regional video duplication projects, which have yielded a total of nearly 4,000 video titles. The complexity of…

Abrasive wear behavior of heat-treated ABC-silicon carbide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Xiao Feng; Lee, Gun Y.; Chen, Da

2002-06-17

Hot-pressed silicon carbide, containing aluminum, boron, and carbon additives (ABC-SiC), was subjected to three-body and two-body wear testing using diamond abrasives over a range of sizes. In general, the wear resistance of ABC-SiC, with suitable heat treatment, was superior to that of commercial SiC.

Creating an iPhone Application for Collecting Continuous ABC Data

ERIC Educational Resources Information Center

Whiting, Seth W.; Dixon, Mark R.

2012-01-01

This paper provides an overview and task analysis for creating a continuous ABC data- collection application using Xcode on a Mac computer. Behavior analysts can program an ABC data collection system, complete with a customized list of target clients, antecedents, behaviors, and consequences to be recorded, and have the data automatically sent to…

75 FR 42069 - Fisheries of the South Atlantic and Gulf of Mexico; South Atlantic Fishery Management Council...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-20

...) will hold a meeting of its Scientific and Statistical Committee (SSC) to discuss Acceptable Biological Catch (ABC) Control Rules, and recommend ABC values for South Atlantic managed species. See... discuss ABC control rules for stocks which do not have peer reviewed quantitative stock assessments and...

Parents' Perspectives on Braille Literacy: Results from the ABC Braille Study

ERIC Educational Resources Information Center

Kamei-Hannan, Cheryl; Sacks, Sharon Zell

2012-01-01

Introduction: Parents who were the primary caretakers of children in the Alphabetic and Contracted Braille Study (ABC Braille Study) revealed their perspectives about braille literacy. Methods: A 30-item questionnaire was constructed by the ABC Braille research team, and researchers conducted telephone interviews with 31 parents who were the…

Association of Serotonin Concentration to Behavior and IQ in Autistic Children.

ERIC Educational Resources Information Center

Kuperman, Samuel; And Others

1987-01-01

The IQ and behavior patterns on the Autism Behavior Checklist (ABC) of 25 boys were compared to blood concentrations of platelet rich plasma (PRP) serotonin. Although no correlations were found between serotonin levels and IQ or ABC scales, four individual ABC items did correlate with serotonin concentrations. (Author/DB)

Confirmatory Factor Analysis of the Kaufman Assessment Battery for Children: A Reevaluation.

ERIC Educational Resources Information Center

Strommen, Erik

1988-01-01

Performed confirmatory factor analyses of Kaufman Assessment Battery for Children (K-ABC) using subtest correlations for standardization samples provided in manuals to test hypothesis that factors underlying K-ABC are substantially intercorrelated at all age levels for two- and three-factor models. Findings suggest K-ABC cannot distinguish between…

78 FR 48860 - New England Fishery Management Council; Public Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-12

... ABC Control Rule Working Group (ABC WG) and Electronic Monitoring Working Group (EM WG). DATES: The first meeting of the ABC Control Rule Working Group will be on Tuesday, September 3, 2013. The meeting..., times and places for the meetings will be posted on the Council's Web site, http://nefmc.org/ . FOR...

School-Based Management and Accountability Procedures Manual

ERIC Educational Resources Information Center

North Carolina Department of Public Instruction, 2004

2004-01-01

From the mission, several principles were developed to guide the School-Based Management and Accountability Program (the ABCs). (1) The ABCs sets standards for student performance and growth in the basics that are the foundation for further learning and achievement; (2) The accountability system in the ABCs plan is designed to result in improved…

Molecular analysis of imipenem-resistant Acinetobacter baumannii isolated from US service members wounded in Iraq, 2003–2008

USDA-ARS?s Scientific Manuscript database

Clonal spread and global dissemination of imipenem resistant (IR) A. baumannii-A. calcoaceticus complex (ABC) have been reported in recent years. However, the epidemiological features of the IR-ABCs in military treatment facilities (MTFs) have not been systematically studied. In this study, 298 ABC...

Escalated convergent artificial bee colony

NASA Astrophysics Data System (ADS)

Jadon, Shimpi Singh; Bansal, Jagdish Chand; Tiwari, Ritu

2016-03-01

Artificial bee colony (ABC) optimisation algorithm is a recent, fast and easy-to-implement population-based meta heuristic for optimisation. ABC has been proved a rival algorithm with some popular swarm intelligence-based algorithms such as particle swarm optimisation, firefly algorithm and ant colony optimisation. The solution search equation of ABC is influenced by a random quantity which helps its search process in exploration at the cost of exploitation. In order to find a fast convergent behaviour of ABC while exploitation capability is maintained, in this paper basic ABC is modified in two ways. First, to improve exploitation capability, two local search strategies, namely classical unidimensional local search and levy flight random walk-based local search are incorporated with ABC. Furthermore, a new solution search strategy, namely stochastic diffusion scout search is proposed and incorporated into the scout bee phase to provide more chance to abandon solution to improve itself. Efficiency of the proposed algorithm is tested on 20 benchmark test functions of different complexities and characteristics. Results are very promising and they prove it to be a competitive algorithm in the field of swarm intelligence-based algorithms.

Enhanced High-Rate Shockwave Lithotripsy Stone Comminution in an In Vivo Porcine Model Using Acoustic Bubble Coalescence.

PubMed

Alavi Tamaddoni, Hedieh; Roberts, William W; Duryea, Alexander P; Cain, Charles A; Hall, Timothy L

2016-12-01

Cavitation plays a significant role in the efficacy of stone comminution during shockwave lithotripsy (SWL). Although cavitation on the surface of urinary stones helps to improve fragmentation, cavitation bubbles along the propagation path may shield or block subsequent shockwaves (SWs) and potentially induce collateral tissue damage. Previous in vitro work has shown that applying low-amplitude acoustic waves after each SW can force bubbles to consolidate and enhance SWL efficacy. In this study, the feasibility of applying acoustic bubble coalescence (ABC) in vivo was tested. Model stones were percutaneously implanted and treated with 2500 lithotripsy SWs at 120 SW/minute with or without ABC. Comparing the results of stone comminution, a significant improvement was observed in the stone fragmentation process when ABC was used. Without ABC, only 25% of the mass of the stone was fragmented to particles <2 mm in size. With ABC, 75% of the mass was fragmented to particles <2 mm in size. These results suggest that ABC can reduce the shielding effect of residual bubble nuclei, resulting in a more efficient SWL treatment.

ATP-binding cassette (ABC) proteins in aquatic invertebrates: Evolutionary significance and application in marine ecotoxicology.

PubMed

Jeong, Chang-Bum; Kim, Hui-Su; Kang, Hye-Min; Lee, Jae-Seong

2017-04-01

The ATP-binding cassette (ABC) protein superfamily is known to play a fundamental role in biological processes and is highly conserved across animal taxa. The ABC proteins function as active transporters for multiple substrates across the cellular membrane by ATP hydrolysis. As this superfamily is derived from a common ancestor, ABC genes have evolved via lineage-specific duplications through the process of adaptation. In this review, we summarized information about the ABC gene families in aquatic invertebrates, considering their evolution and putative functions in defense mechanisms. Phylogenetic analysis was conducted to examine the evolutionary significance of ABC gene families in aquatic invertebrates. Particularly, a massive expansion of multixenobiotic resistance (MXR)-mediated efflux transporters was identified in the absence of the ABCG2 (BCRP) gene in Ecdysozoa and Platyzoa, suggesting that a loss of Abcg2 gene occurred sporadically in these species during divergence of Protostome to Lophotrochozoa. Furthermore, in aquatic invertebrates, the ecotoxicological significance of MXR is discussed while considering the role of MXR-mediated efflux transporters in response to various environmental pollutants. Copyright © 2017 Elsevier B.V. All rights reserved.

Genome-wide identification of ATP-binding cassette (ABC) transporters and their roles in response to polycyclic aromatic hydrocarbons (PAHs) in the copepod Paracyclopina nana.

PubMed

Jeong, Chang-Bum; Kim, Duck-Hyun; Kang, Hye-Min; Lee, Young Hwan; Kim, Hui-Su; Kim, Il-Chan; Lee, Jae-Seong

2017-02-01

The ATP-binding cassette (ABC) protein superfamily is one of the largest gene families and is highly conserved in all domains. The ABC proteins play roles in several biological processes, including multi-xenobiotic resistance (MXR), by functioning as transporters in the cellular membrane. They also mediate the cellular efflux of a wide range of substrates against concentration gradients. In this study, 37 ABC genes belonging to eight distinct subfamilies were identified in the marine copepod Paracyclopina nana and annotated based on a phylogenetic analysis. Also, the functions of P-glycoproteins (P-gp) and multidrug resistance-associated proteins (MRPs), conferring MXR, were verified using fluorescent substrates and specific inhibitors. The activities of MXR-mediated ABC proteins and their transcriptional level were examined in response to polyaromatic hydrocarbons (PAHs), main components of the water-accommodated fraction. This study increases the understanding of the protective role of MXR in response to PAHs over the comparative evolution of ABC gene families. Copyright © 2016 Elsevier B.V. All rights reserved.

A hybrid artificial bee colony algorithm for numerical function optimization

NASA Astrophysics Data System (ADS)

Alqattan, Zakaria N.; Abdullah, Rosni

2015-02-01

Artificial Bee Colony (ABC) algorithm is one of the swarm intelligence algorithms; it has been introduced by Karaboga in 2005. It is a meta-heuristic optimization search algorithm inspired from the intelligent foraging behavior of the honey bees in nature. Its unique search process made it as one of the most competitive algorithm with some other search algorithms in the area of optimization, such as Genetic algorithm (GA) and Particle Swarm Optimization (PSO). However, the ABC performance of the local search process and the bee movement or the solution improvement equation still has some weaknesses. The ABC is good in avoiding trapping at the local optimum but it spends its time searching around unpromising random selected solutions. Inspired by the PSO, we propose a Hybrid Particle-movement ABC algorithm called HPABC, which adapts the particle movement process to improve the exploration of the original ABC algorithm. Numerical benchmark functions were used in order to experimentally test the HPABC algorithm. The results illustrate that the HPABC algorithm can outperform the ABC algorithm in most of the experiments (75% better in accuracy and over 3 times faster).

Factor validity and norms for the aberrant behavior checklist in a community sample of children with mental retardation.

PubMed

Marshburn, E C; Aman, M G

1992-09-01

The Aberrant Behavior Checklist (ABC) is a 58-item rating scale that was developed primarily to measure the effects of pharmacological intervention in individuals living in residential facilities. This study investigated the use of the ABC in a sample of community children with mental retardation. Teacher ratings on the ABC were collected on 666 students attending special classes. The data were factor analyzed and compared with other studies using the ABC. In addition, subscales were analyzed as a function of age, sex, and classroom placement, and preliminary norms were derived. A four-factor solution of the ABC was obtained. Congruence between the four derived factors and corresponding factors from the original ABC was high (congruence coefficients ranged between .87 and .96). Classroom placement and age had significant effects on subscale scores, whereas sex failed to affect ratings. The current results are sufficiently close to the original factor solution that the original scoring method can be used with community samples, although further studies are needed to look at this in more detail.

Brassboard Astrometric Beam Combiner (ABC) Development for the Space Interferometry Mission (SIM)

NASA Technical Reports Server (NTRS)

Jeganathan, Muthu; Kuan, Gary; Rud, Mike; Lin, Sean; Sutherland, Kristen; Moore, James; An, Xin

2008-01-01

The Astrometric Beam Combiner (ABC) is a critical element of the Space Interferometry Mission (SIM) that performs three key functions: coherently combine starlight from two siderostats; individually detect starlight for angle tracking; and disperse and detect the interferometric fringes. In addition, the ABC contains: a stimulus, cornercubes and shutters for in-orbit calibration; several tip/tilt mirror mechanisms for in-orbit alignment; and internal metrology beam launcher for pathlength monitoring. The detailed design of the brassboard ABC (which has the form, fit and function of the flight unit) is complete, procurement of long-lead items is underway, and assembly and testing is expected to be completed in Spring 2009. In this paper, we present the key requirements for the ABC, details of the completed optical and mechanical design as well as plans for assembly and alignment.

Structure, function, and evolution of bacterial ATP-binding cassette systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davidson, A.L.; Dassa, E.; Orelle, C.

2010-07-27

The ATP-binding cassette (ABC) systems constitute one of the largest superfamilies of paralogous sequences. All ABC systems share a highly conserved ATP-hydrolyzing domain or protein (the ABC; also referred to as a nucleotide-binding domain [NBD]) that is unequivocally characterized by three short sequence motifs (Fig. 1): these are the Walker A and Walker B motifs, indicative of the presence of a nucleotide-binding site, and the signature motif, unique to ABC proteins, located upstream of the Walker B motif (426). Other motifs diagnostic of ABC proteins are also indicated in Fig. 1. The biological significance of these motifs is discussed inmore » Structure, Function, and Dynamics of the ABC. ABC systems are widespread among living organisms and have been detected in all genera of the three kingdoms of life, with remarkable conservation in the primary sequence of the cassette and in the organization of the constitutive domains or subunits (203, 420). ABC systems couple the energy of ATP hydrolysis to an impressively large variety of essential biological phenomena, comprising not only transmembrane (TM) transport, for which they are best known, but also several non-transport-related processes, such as translation elongation (62) and DNA repair (174). Although ABC systems deserve much attention because they are involved in severe human inherited diseases (107), they were first discovered and characterized in detail in prokaryotes, as early as the 1970s (13, 148, 238, 468). The most extensively analyzed systems were the high-affinity histidine and maltose uptake systems of Salmonella enterica serovar Typhimurium and Escherichia coli. Over 2 decades ago, after the completion of the nucleotide sequences encoding these transporters in the respective laboratories of Giovanna Ames and Maurice Hofnung, Hiroshi Nikaido and colleagues noticed that the two systems displayed a global similarity in the nature of their components and, moreover, that the primary sequences of MalK and HisP, the proteins suspected to energize these transporters, shared as much as 32% identity in amino acid residues when their sequences were aligned (171). Later, it was found that several bacterial proteins involved in uptake of nutrients, export of toxins, cell division, bacterial nodulation of plants, and DNA repair displayed the same similarity in their sequences (127, 196). This led to the notion that the conserved protein, which had been shown to bind ATP (198, 201), would probably energize the systems mentioned above by coupling the energy of ATP hydrolysis to transport. The latter was demonstrated with the maltose and histidine transporters by use of isolated membrane vesicles (105, 379) and purified transporters reconstituted into proteoliposomes (30, 98). The determination of the sequence of the first eukaryotic protein strongly similar to these bacterial transporters (the P-glycoprotein, involved in resistance of cancer cells to multiple drugs) (169, 179) demonstrated that these proteins were not restricted to prokaryotes. Two names, 'traffic ATPases' (15) and the more accepted name 'ABC transporters' (193, 218), were proposed for members of this new superfamily. ABC systems can be divided into three main functional categories, as follows. Importers mediate the uptake of nutrients in prokaryotes. The nature of the substrates that are transported is very wide, including mono- and oligosaccharides, organic and inorganic ions, amino acids, peptides, ironsiderophores, metals, polyamine cations, opines, and vitamins. Exporters are involved in the secretion of various molecules, such as peptides, lipids, hydrophobic drugs, polysaccharides, and proteins, including toxins such as hemolysin. The third category of systems is apparently not involved in transport, with some members being involved in translation of mRNA and in DNA repair. Despite the large, diverse population of substrates handled and the difference in the polarity of transport, importers and exporters share a common organization made of two hydrophobic membrane-spanning or integral membrane (IM) domains and two hydrophilic domains carrying the ABC peripherally associated with the IM domains on the cytosolic side of the membrane (26). In importers, these four domains are almost always independent polypeptide chains that come together to form a multimeric complex. In most exporters, including the E. coli hemolysin exporter HlyB, the N-terminal IM and the C-terminal ABC domains are fused as a single polypeptide chain (IM-ABC). An inverted organization in which the IM domain is C-terminal with respect to the ABC domain (ABC-IM) exists, such as in the MacB protein, involved in macrolide resistance in E. coli. No IM domain partners have been identified for ABC proteins falling into the third category, and these proteins consist of two ABCs fused together (ABC2).« less

ATP binding cassette (ABC) transporters: expression and clinical value in glioblastoma.

PubMed

Dréan, Antonin; Rosenberg, Shai; Lejeune, François-Xavier; Goli, Larissa; Nadaradjane, Aravindan Arun; Guehennec, Jérémy; Schmitt, Charlotte; Verreault, Maïté; Bielle, Franck; Mokhtari, Karima; Sanson, Marc; Carpentier, Alexandre; Delattre, Jean-Yves; Idbaih, Ahmed

2018-03-08

ATP-binding cassette transporters (ABC transporters) regulate traffic of multiple compounds, including chemotherapeutic agents, through biological membranes. They are expressed by multiple cell types and have been implicated in the drug resistance of some cancer cells. Despite significant research in ABC transporters in the context of many diseases, little is known about their expression and clinical value in glioblastoma (GBM). We analyzed expression of 49 ABC transporters in both commercial and patient-derived GBM cell lines as well as from 51 human GBM tumor biopsies. Using The Cancer Genome Atlas (TCGA) cohort as a training dataset and our cohort as a validation dataset, we also investigated the prognostic value of these ABC transporters in newly diagnosed GBM patients, treated with the standard of care. In contrast to commercial GBM cell lines, GBM-patient derived cell lines (PDCL), grown as neurospheres in a serum-free medium, express ABC transporters similarly to parental tumors. Serum appeared to slightly increase resistance to temozolomide correlating with a tendency for an increased expression of ABCB1. Some differences were observed mainly due to expression of ABC transporters by microenvironmental cells. Together, our data suggest that the efficacy of chemotherapeutic agents may be misestimated in vitro if they are the targets of efflux pumps whose expression can be modulated by serum. Interestingly, several ABC transporters have prognostic value in the TCGA dataset. In our cohort of 51 GBM patients treated with radiation therapy with concurrent and adjuvant temozolomide, ABCA13 overexpression is associated with a decreased progression free survival in univariate (p < 0.01) and multivariate analyses including MGMT promoter methylation (p = 0.05) suggesting reduced sensitivity to temozolomide in ABCA13 overexpressing GBM. Expression of ABC transporters is: (i) detected in GBM and microenvironmental cells and (ii) better reproduced in GBM-PDCL. ABCA13 expression is an independent prognostic factor in newly diagnosed GBM patients. Further prospective studies are warranted to investigate whether ABCA13 expression can be used to further personalize treatments for GBM.

Retrospective Methods Analysis of Semiautomated Intracerebral Hemorrhage Volume Quantification From a Selection of the STICH II Cohort (Early Surgery Versus Initial Conservative Treatment in Patients With Spontaneous Supratentorial Lobar Intracerebral Haematomas).

PubMed

Haley, Mark D; Gregson, Barbara A; Mould, W Andrew; Hanley, Daniel F; Mendelow, Alexander David

2018-02-01

The ABC/2 method for calculating intracerebral hemorrhage (ICH) volume has been well validated. However, the formula, derived from the volume of an ellipse, assumes the shape of ICH is elliptical. We sought to compare the agreement of the ABC/2 formula with other methods through retrospective analysis of a selection of the STICH II cohort (Early Surgery Versus Initial Conservative Treatment in Patients With Spontaneous Supratentorial Lobar Intracerebral Haematomas). From 390 patients, 739 scans were selected from the STICH II image archive based on the availability of a CT scan compatible with OsiriX DICOM viewer. ICH volumes were calculated by the reference standard semiautomatic segmentation in OsiriX software and compared with calculated arithmetic methods (ABC/2, ABC/2.4, ABC/3, and 2/3SC) volumes. Volumes were compared by difference plots for specific groups: randomization ICH (n=374), 3- to 7-day postsurgical ICH (n=206), antithrombotic-associated ICH (n=79), irregular-shape ICH (n=703) and irregular-density ICH (n=650). Density and shape were measured by the Barras ordinal shape and density groups (1-5). The ABC/2.4 method had the closest agreement to the semiautomatic segmentation volume in all groups, except for the 3- to 7-day postsurgical ICH group where the ABC/3 method was superior. Although the ABC/2 formula for calculating elliptical ICH is well validated, it must be used with caution in ICH scans where the elliptical shape of ICH is a false assumption. We validated the adjustment of the ABC/2.4 method in randomization, antithrombotic-associated, heterogeneous-density, and irregular-shape ICH. URL: http://www.isrctn.com/ISRCTN22153967. Unique identifier: ISRCTN22153967. © 2018 American Heart Association, Inc.

Reproducibility of lung tumor position and reduction of lung mass within the planning target volume using active breathing control (ABC).

PubMed

Cheung, Patrick C F; Sixel, Katharina E; Tirona, Romeo; Ung, Yee C

2003-12-01

The active breathing control (ABC) device allows for temporary immobilization of respiratory motion by implementing a breath hold at a predefined relative lung volume and air flow direction. The purpose of this study was to quantitatively evaluate the ability of the ABC device to immobilize peripheral lung tumors at a reproducible position, increase total lung volume, and thereby reduce lung mass within the planning target volume (PTV). Ten patients with peripheral non-small-cell lung cancer tumors undergoing radiotherapy had CT scans of their thorax with and without ABC inspiration breath hold during the first 5 days of treatment. Total lung volumes were determined from the CT data sets. Each peripheral lung tumor was contoured by one physician on all CT scans to generate gross tumor volumes (GTVs). The lung density and mass contained within a 1.5-cm PTV margin around each peripheral tumor was calculated using CT numbers. Using the center of the GTV from the Day 1 ABC scan as the reference, the displacement of subsequent GTV centers on Days 2 to 5 for each patient with ABC applied was calculated in three dimensions. With the use of ABC inspiration breath hold, total lung volumes increased by an average of 42%. This resulted in an average decrease in lung mass of 18% within a standard 1.5-cm PTV margin around the GTV. The average (+/- standard deviation) displacement of GTV centers with ABC breath hold applied was 0.3 mm (+/- 1.8 mm), 1.2 mm (+/- 2.3 mm), and 1.1 mm (+/- 3.5 mm) in the lateral direction, anterior-posterior direction, and superior-inferior direction, respectively. Results from this study indicate that there remains some inter-breath hold variability in peripheral lung tumor position with the use of ABC inspiration breath hold, which prevents significant PTV margin reduction. However, lung volumes can significantly increase, thereby decreasing the mass of lung within a standard PTV.

The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea.

PubMed

Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus

2016-04-01

For successful biocontrol interactions, biological control organisms must tolerate toxic metabolites produced by themselves or plant pathogens during mycoparasitic/antagonistic interactions, by host plant during colonization of the plant, and xenobiotics present in the environment. ATP-binding cassette (ABC) transporters can play a significant role in tolerance of toxic compounds by mediating active transport across the cellular membrane. This paper reports on functional characterization of an ABC transporter ABCG29 in the biocontrol fungus Clonostachys rosea strain IK726. Gene expression analysis showed induced expression of abcG29 during exposure to the Fusarium spp. mycotoxin zearalenone (ZEA) and the fungicides Cantus, Chipco Green and Apron. Expression of abcG29 in C. rosea was significantly higher during C. rosea-C. rosea (Cr-Cr) interaction or in exposure to C. rosea culture filtrate for 2 h, compared to interaction with Fusarium graminearum or 2 h exposure to F. graminearum culture filtrate. In contrast with gene expression data, ΔabcG29 strains did not display reduced tolerance towards ZEA, fungicides or chemical agents known for inducing oxidative, cell wall or osmotic stress, compared to C. rosea WT. The exception was a significant reduction in tolerance to H2O2 (10 mM) in ΔabcG29 strains when conidia were used as an inoculum. The antagonistic ability of ΔabcG29 strains towards F. graminearum, Fusarium oxysporum or Botrytis cinerea in dual plate assays were not different compared with WT. However, in biocontrol assays ΔabcG29 strains displayed reduced ability to protect Arabidopsis thaliana leaves from B. cinerea, and barley seedling from F. graminearum as measured by an A. thaliana detached leaf assay and a barley foot rot disease assay, respectively. These data show that the ABCG29 is dispensable for ZEA and fungicides tolerance, and antagonism but not H2O2 tolerance and biocontrol effects in C. rosea.

Uniform Atmospheric Retrievals of Ultracool Late-T and Early-Y dwarfs

NASA Astrophysics Data System (ADS)

Garland, Ryan; Irwin, Patrick

2017-10-01

A significant number of ultracool (<600K) extrasolar objects have been discovered in the past decade thanks to wide-field surveys such as WISE. These objects present a perfect testbed for examining the evolution of atmospheric structure as we transition from typically hot extrasolar temperatures to the temperatures found within our Solar System.By examining these types of objects with a uniform retrieval method, we hope to elucidate any trends and (dis)similarities found in atmospheric parameters, such as chemical abundances, temperature-pressure profile, and cloud structure, for a sample of 7 ultracool brown dwarfs as we transition from hotter (~700K) to colder objects (~450K).We perform atmospheric retrievals on two late-T and five early-Y dwarfs. We use the NEMESIS atmospheric retrieval code coupled to a Nested Sampling algorithm, along with a standard uniform model for all of our retrievals. The uniform model assumes the atmosphere is described by a gray radiative-convective temperature profile, (optionally) a gray cloud, and a number of relevant gases. We first verify our methods by comparing it to a benchmark retrieval for Gliese 570D, which is found to be consistent. Furthermore, we present the retrieved gaseous composition, temperature structure, spectroscopic mass and radius, cloud structure and the trends associated with decreasing temperature found in this small sample of objects.

Support for the 2007 Meeting of the Society for Mathematical Psychology

DTIC Science & Technology

2007-12-10

Ballroom: Salons A,B,&C 1 1:45am-l:15pm Lunch (provided) Lakeside Area 1:15pm-4:00pm Symposia & Talk Sessions Ballroom: Salons A,B,&C 4:30pm-5:30pm Plenary...Symposia & Talk Sessions Ballroom: Salons A,B,&C 11:45am-1:15pm Lunch (provided) Lakeside Area 1:1 5pm-4:00pm Symposia & Talk Sessions Ballroom: Salons A,B...Sat 7:45am-8:45am Breakfast (provided) Lakeside Area 9:00am-1 1:45am Symposia & Talk Sessions Ballroom: Salons A,B,&C Program Overview Plenary

Hybrid artificial bee colony algorithm for parameter optimization of five-parameter bidirectional reflectance distribution function model.

PubMed

Wang, Qianqian; Zhao, Jing; Gong, Yong; Hao, Qun; Peng, Zhong

2017-11-20

A hybrid artificial bee colony (ABC) algorithm inspired by the best-so-far solution and bacterial chemotaxis was introduced to optimize the parameters of the five-parameter bidirectional reflectance distribution function (BRDF) model. To verify the performance of the hybrid ABC algorithm, we measured BRDF of three kinds of samples and simulated the undetermined parameters of the five-parameter BRDF model using the hybrid ABC algorithm and the genetic algorithm, respectively. The experimental results demonstrate that the hybrid ABC algorithm outperforms the genetic algorithm in convergence speed, accuracy, and time efficiency under the same conditions.

Ship-borne Radio and GLD360 Measurements of Intense Oceanic Lightning

NASA Astrophysics Data System (ADS)

Zoghzoghy, F. G.; Cohen, M.; Said, R.; Lehtinen, N. G.; Inan, U.

2013-12-01

Recent studies with the GLD360 lightning geo-location network have shown that the peak current intensity of cloud-to-ground (CG) lightning is more powerful over the ocean than over land. This remains a poorly understood phenomenon. The Stanford VLF group has recently deployed a Very Low Frequency (1 MHz sampling rate) radio receiver system aboard the NOAA Ronald W. Brown research vessel. The goal of this transatlantic experiment is to improve our understanding of oceanic lightning and to investigate the physical difference between oceanic and land lightning. When positioned reasonably close to deep oceanic thunderstorms, the LF-VLF receiver aboard the Ronald W. Brown detects the impulsive radio emissions from the return stroke, up to 1 MHz, which enables us to estimate the return-stroke waveform shapes generated by the lightning channel. In this presentation, we present our experimental setup and a summary of the data collected during the transatlantic voyages of the NOAA ship. We process lightning-generated waveforms, compare them to LF-VLF data from land lightning over Oklahoma, extract statistical patterns, and compare the data to numerical and analytical models.

The potential of kiwifruit puree as a clean label ingredient to stabilize high pressure pasteurized cloudy apple juice during storage.

PubMed

Yi, Junjie; Kebede, Biniam; Kristiani, Kristiani; Buvé, Carolien; Van Loey, Ann; Grauwet, Tara; Hendrickx, Marc

2018-07-30

In the fruit juice industry, high pressure (HP) processing has become a commercial success. However, enzymatic browning, cloud loss, and flavor changes during storage remain challenges. The aim of this study is to combine kiwifruit puree and HP pasteurization (600 MPa/3 min) to stabilize cloudy apple juice during storage at 4 °C. A wide range of targeted and untargeted quality characteristics was evaluated using a multivariate approach. Due to high ascorbic acid content and high viscosity, kiwifruit puree allowed to prevent enzymatic browning and phase separation of an apple-kiwifruit mixed juice. Besides, no clear changes in organic acids, viscosity, and particle size distribution were detected in mixed juice during storage. Sucrose of apple and mixed juices decreased with glucose and fructose increasing during storage. The volatile changes of both juices behaved similar, mainly esters being degraded. Sensory evaluation demonstrated consumer preferred the aroma of mixed juice compared to apple juice. Copyright © 2018 Elsevier Ltd. All rights reserved.

`Brown Paper Packages'? A Sociocultural Perspective on Young Children's Ideas in Science

NASA Astrophysics Data System (ADS)

Robbins, Jill

2005-09-01

How do we see young children's thinking in science? Is it, as much previous research has led us to believe, that their ideas can be neatly boxed like “brown paper packages tied up with strings” - as the song from The Sound of Music goes? Or are their ideas like “wild geese that fly with the moon on their wings” ( Sound of Music): fluid, complex, rich. . .? Drawing on the author's research into young children's ideas about natural phenomena such as the rain and clouds, and on Rogoff's three foci of analysis (personal, interpersonal and contextual), this paper illustrates how a consideration of sociocultural theory can be useful in framing research with young children, and allow us to see beyond the boxes. Emphasis is placed on recognising that children's thinking in science is embedded within particular sociocultural contexts, is guided by others and integrated with their use of certain mental and physical cultural tools. Thus, the article aims to present an alternative method for the generation of data on young children's thinking. Specific analysis of this data will, it is intended, be presented in a subsequent article.

POLARIMETRIC DETECTION OF EXOPLANETS TRANSITING T AND L BROWN DWARFS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sengupta, Sujan, E-mail: sujan@iiap.res.in

While scattering of light by atoms and molecules yields large amounts of polarization at the B-band of both T and L dwarfs, scattering by dust grains in the cloudy atmosphere of L dwarfs gives rise to significant polarization at the far-optical and infrared wavelengths where these objects are much brighter. However, the observable disk-averaged polarization should be zero if the clouds are uniformly distributed and the object is spherically symmetric. Therefore, in order to explain the observed large polarization of several L dwarfs, rotation-induced oblateness or horizontally inhomogeneous cloud distribution in the atmosphere is invoked. On the other hand, whenmore » an extra-solar planet of Earth-size or larger transits the brown dwarf along the line of sight, the asymmetry induced during the transit gives rise to a net non-zero, time-dependent polarization. Employing atmospheric models for a range of effective temperature and surface gravity appropriate for T and L dwarfs, I derive the time-dependent polarization profiles of these objects during the transit phase and estimate the peak amplitude of polarization that occurs during the inner contact points of the transit ingress/egress phase. It is found that peak polarization in the range of 0.2%–1.0% at I and J band may arise of cloudy L dwarfs occulted by Earth-size or larger exoplanets. Such an amount of polarization is higher than what can be produced by rotation-induced oblateness of even rapidly rotating L dwarfs. Hence, I suggest that time-resolved imaging polarization could be a potential technique for detecting transiting exoplanets around L dwarfs.« less

HST Rotational Spectral Mapping Of Two L-Type Brown Dwarfs: Variability In And Out Of Water Bands Indicates High-Altitude Haze Layers

DOE PAGES

Yang, Hao; Apai, Dániel; Marley, Mark S.; ...

2014-12-17

We present time-resolved near-infrared spectroscopy of two L5 dwarfs, 2MASS J18212815+1414010 and 2MASS J15074759-1627386, observed with the Wide Field Camera 3 instrument on the Hubble Space Telescope (HST). We study the wavelength dependence of rotation-modulated flux variations between 1.1 μm and 1.7 μm. We find that the water absorption bands of the two L5 dwarfs at 1.15 μm and 1.4 μm vary at similar amplitudes as the adjacent continuum. This differs from the results of previous HST observations of L/T transition dwarfs, in which the water absorption at 1.4 μm displays variations of about half of the amplitude at othermore » wavelengths. We find that the relative amplitude of flux variability out of the water band with respect to that in the water band shows a increasing trend from the L5 dwarfs toward the early T dwarfs. We utilize the models of Saumon & Marley (2008) and find that the observed variability of the L5 dwarfs can be explained by the presence of spatially varying high-altitude haze layers above the condensate clouds. Therefore, our observations show that the heterogeneity of haze layers - the driver of the variability - must be located at very low pressures, where even the water opacity is negligible. In the near future, the rotational spectral mapping technique could be utilized for other atomic and molecular species to probe different pressure levels in the atmospheres of brown dwarfs and exoplanets and uncover both horizontal and vertical cloud structures.« less

Mapping the Substellar Mass-Luminosity Relation Down to the L/T Transition

NASA Astrophysics Data System (ADS)

Dupuy, Trent

2016-10-01

Substellar models underpin our theoretical understanding of brown dwarfs and gas-giant exoplanets, so assessing their accuracy is paramount. The past several years have seen progress in testing models thanks to a growing number of dynamical (total) masses for brown dwarf binaries determined via (relative) orbit monitoring from ground-based AO. However, the strongest tests of models require individual masses, particularly for calibrating the mass-luminosity relation. This is poorly constrained over the range of spectral types most influenced by clouds (mid-L to early-T). Given the observed prevalence of clouds in the atmospheres of directly imaged planets, testing models at such temperatures is crucial.We propose a 3-year program to obtain individual masses for a sample of 11 substellar binaries. Our proposal builds on nearly a decade of orbital monitoring from the ground to measure dynamical total masses. Our goal is thus to measure precise mass ratios, utilizing HST's unique wide-field, high-angular resolution astrometric capabilities. We will obtain WFC3-UVIS images capturing our targets and numerous reference stars so that we can measure the relative amount of orbital motion in each component to determine mass ratios. Three of our targets have I-band photocenter orbits measured at USNO and VLT and thus only require one epoch of resolved I-band imaging to unlock individual masses. We will use this first large sample of substellar individual masses to map out the mass-luminosity relation over a wide range of temperatures (1000-2000 K) including the L/T transition. This will become a touchstone sample for tests of ultracool atmospheric models in the era of JWST.

Mapping the Substellar Mass-Luminosity Relation Down to the L/T Transition

NASA Astrophysics Data System (ADS)

Dupuy, Trent

2017-08-01

Substellar models underpin our theoretical understanding of brown dwarfs and gas-giant exoplanets, so assessing their accuracy is paramount. The past several years have seen progress in testing models thanks to a growing number of dynamical (total) masses for brown dwarf binaries determined via (relative) orbit monitoring from ground-based AO. However, the strongest tests of models require individual masses, particularly for calibrating the mass-luminosity relation. This is poorly constrained over the range of spectral types most influenced by clouds (mid-L to early-T). Given the observed prevalence of clouds in the atmospheres of directly imaged planets, testing models at such temperatures is crucial.We propose a 3-year program to obtain individual masses for a sample of 11 substellar binaries. Our proposal builds on nearly a decade of orbital monitoring from the ground to measure dynamical total masses. Our goal is thus to measure precise mass ratios, utilizing HST's unique wide-field, high-angular resolution astrometric capabilities. We will obtain WFC3-UVIS images capturing our targets and numerous reference stars so that we can measure the relative amount of orbital motion in each component to determine mass ratios. Three of our targets have I-band photocenter orbits measured at USNO and VLT and thus only require one epoch of resolved I-band imaging to unlock individual masses. We will use this first large sample of substellar individual masses to map out the mass-luminosity relation over a wide range of temperatures (1000-2000 K) including the L/T transition. This will become a touchstone sample for tests of ultracool atmospheric models in the era of JWST.

HST ROTATIONAL SPECTRAL MAPPING OF TWO L-TYPE BROWN DWARFS: VARIABILITY IN AND OUT OF WATER BANDS INDICATES HIGH-ALTITUDE HAZE LAYERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Hao; Apai, Dániel; Karalidi, Theodora

We present time-resolved near-infrared spectroscopy of two L5 dwarfs, 2MASS J18212815+1414010 and 2MASS J15074759–1627386, observed with the Wide Field Camera 3 instrument on the Hubble Space Telescope (HST). We study the wavelength dependence of rotation-modulated flux variations between 1.1 μm and 1.7 μm. We find that the water absorption bands of the two L5 dwarfs at 1.15 μm and 1.4 μm vary at similar amplitudes as the adjacent continuum. This differs from the results of previous HST observations of L/T transition dwarfs, in which the water absorption at 1.4 μm displays variations of about half of the amplitude at othermore » wavelengths. We find that the relative amplitude of flux variability out of the water band with respect to that in the water band shows a increasing trend from the L5 dwarfs toward the early T dwarfs. We utilize the models of Saumon and Marley and find that the observed variability of the L5 dwarfs can be explained by the presence of spatially varying high-altitude haze layers above the condensate clouds. Therefore, our observations show that the heterogeneity of haze layers—the driver of the variability—must be located at very low pressures, where even the water opacity is negligible. In the near future, the rotational spectral mapping technique could be utilized for other atomic and molecular species to probe different pressure levels in the atmospheres of brown dwarfs and exoplanets and uncover both horizontal and vertical cloud structures.« less

HST Rotational Spectral Mapping Of Two L-Type Brown Dwarfs: Variability In And Out Of Water Bands Indicates High-Altitude Haze Layers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Hao; Apai, Dániel; Marley, Mark S.

We present time-resolved near-infrared spectroscopy of two L5 dwarfs, 2MASS J18212815+1414010 and 2MASS J15074759-1627386, observed with the Wide Field Camera 3 instrument on the Hubble Space Telescope (HST). We study the wavelength dependence of rotation-modulated flux variations between 1.1 μm and 1.7 μm. We find that the water absorption bands of the two L5 dwarfs at 1.15 μm and 1.4 μm vary at similar amplitudes as the adjacent continuum. This differs from the results of previous HST observations of L/T transition dwarfs, in which the water absorption at 1.4 μm displays variations of about half of the amplitude at othermore » wavelengths. We find that the relative amplitude of flux variability out of the water band with respect to that in the water band shows a increasing trend from the L5 dwarfs toward the early T dwarfs. We utilize the models of Saumon & Marley (2008) and find that the observed variability of the L5 dwarfs can be explained by the presence of spatially varying high-altitude haze layers above the condensate clouds. Therefore, our observations show that the heterogeneity of haze layers - the driver of the variability - must be located at very low pressures, where even the water opacity is negligible. In the near future, the rotational spectral mapping technique could be utilized for other atomic and molecular species to probe different pressure levels in the atmospheres of brown dwarfs and exoplanets and uncover both horizontal and vertical cloud structures.« less

iss012e21250

NASA Image and Video Library

2006-03-21

ISS012-E-21250 (2 March 2006) --- Dust and smog in northeast China are featured in this image photographed by an Expedition 12 crewmember on the International Space Station. Much of the land surface is obscured in this oblique image of the North China Plain and parts of Inner Mongolia. In the center of the view a mass of gray smog—mainly industrial pollution and smoke from domestic burning—obscures Beijing and surrounding cities. Numerous plumes with their source points appear within the mass. Beijing suffers some of the worst air pollution in the world from these chronic sources, and the characteristic colors and textures of the smog can be easily seen through windows of the International Space Station. The coastline of Bo Hai Bay, 300 kilometers east of Beijing, is visible at left. The light brown material in Bo Hai Bay is sediment from the Yellow and other rivers. Separated from the smog mass by a band of puffy, white cumulus clouds is a light brown plume of dust. The line of white cloud has developed along the escarpment that separates the heavily populated North China Plain – location of the largest population agglomeration on Earth – and the sparsely populated semi-desert plains of Inner Mongolia. Observers saw a number of dust events in most Northern Hemisphere deserts in the spring of 2006, and the Gobi and the Takla Makan deserts of western China were no exception. Dust plumes originating in these deserts typically extend eastward hundreds of kilometers, regularly depositing dust on Beijing, the Korean peninsula and Japan. Some plumes even extend over the Pacific Ocean. In extreme cases, visible masses of Gobi-derived dust have reached North America.

Applying activity-based costing to the nuclear medicine unit.

PubMed

Suthummanon, Sakesun; Omachonu, Vincent K; Akcin, Mehmet

2005-08-01

Previous studies have shown the feasibility of using activity-based costing (ABC) in hospital environments. However, many of these studies discuss the general applications of ABC in health-care organizations. This research explores the potential application of ABC to the nuclear medicine unit (NMU) at a teaching hospital. The finding indicates that the current cost averages 236.11 US dollars for all procedures, which is quite different from the costs computed by using ABC. The difference is most significant with positron emission tomography scan, 463 US dollars (an increase of 96%), as well as bone scan and thyroid scan, 114 US dollars (a decrease of 52%). The result of ABC analysis demonstrates that the operational time (machine time and direct labour time) and the cost of drugs have the most influence on cost per procedure. Clearly, to reduce the cost per procedure for the NMU, the reduction in operational time and cost of drugs should be analysed. The result also indicates that ABC can be used to improve resource allocation and management. It can be an important aid in making management decisions, particularly for improving pricing practices by making costing more accurate. It also facilitates the identification of underutilized resources and related costs, leading to cost reduction. The ABC system will also help hospitals control costs, improve the quality and efficiency of the care they provide, and manage their resources better.

Factorial validity of the Movement Assessment Battery for Children-2 (age band 2).

PubMed

Wagner, Matthias Oliver; Kastner, Julia; Petermann, Franz; Bös, Klaus

2011-01-01

The Movement Assessment Battery for Children-2 (M-ABC-2) is one of the most commonly used tests for the diagnosis of specific developmental disorders of motor function (F82). The M-ABC-2 comprises eight subtests per age band (AB) that are assigned to three dimensions: manual dexterity, aiming and catching, and balance. However, while previous exploratory findings suggested the correctness of the assumption of factorial validity, there is no empirical evidence that the M-ABC-2 subtests allow for a valid reproduction of the postulated factorial structure. The purpose of this study was to empirically confirm the factorial validity of the M-ABC-2. The German normative sample of AB2 (7-10 years; N=323) was used as the study sample for the empirical analyses. Confirmatory factor analysis was used to verify the factorial validity of the M-ABC-2 (AB2). The incremental fit indices (χ2=28.675; df=17; Bollen-Stine p value=0.318; RMSEA=0.046 [0.011-0.075]; SRMR=0.038; CFI=0.960) provided evidence for the factorial validity of the M-ABC-2 (AB2). However, because of a lack of empirical verification for convergent and discriminant validity, there is still no evidence that F82 can be diagnosed using M-ABC-2 (AB2). Copyright © 2010 Elsevier Ltd. All rights reserved.

Mdr65 decreases toxicity of multiple insecticides in Drosophila melanogaster.

PubMed

Sun, Haina; Buchon, Nicolas; Scott, Jeffrey G

2017-10-01

ABC transporters are ubiquitous membrane-bound proteins, present in both prokaryotes and eukaryotes. The major function of eukaryotic ABC transporters is to mediate the efflux of a variety of substrates (including xenobiotics) out of cells. ABC transporters have been widely investigated in humans, particularly for their involvement in multidrug resistance (MDR). Considerably less is known about their roles in transport and/or excretion in insects. ABC transporters are only known to function as exporters in insects. Drosophila melanogaster has 56 ABC transporter genes, including eight which are phylogenetically most similar to the human Mdr genes (ABCB1 clade). We investigated the role of ABC transporters in the ABCB1 clade in modulating the susceptibility to insecticides. We took advantage of the GAL4/UAS system in D. melanogaster to knockdown the expression levels of Mdr65, Mdr50, Mdr49 and ABCB6 using transgenic UAS-RNAi lines and conditional driver lines. The most notable effects were increased sensitivities to nine different insecticides by silencing of Mdr65. Furthermore, a null mutation of Mdr65 decreased the malathion, malaoxon and fipronil LC 50 values by a factor of 1.9, 2.1 and 3.9, respectively. Altogether, this data demonstrates the critical role of ABC transporters, particularly Mdr65, in altering the toxicity of specific, structurally diverse, insecticides in D. melanogaster. Copyright © 2017 Elsevier Ltd. All rights reserved.

Genome-Wide Identification and Expression Profiling of ATP-Binding Cassette (ABC) Transporter Gene Family in Pineapple (Ananas comosus (L.) Merr.) Reveal the Role of AcABCG38 in Pollen Development

PubMed Central

Chen, Piaojuan; Li, Yi; Zhao, Lihua; Hou, Zhimin; Yan, Maokai; Hu, Bingyan; Liu, Yanhui; Azam, Syed Muhammad; Zhang, Ziyan; Rahman, Zia ur; Liu, Liping; Qin, Yuan

2017-01-01

Pineapple (Ananas comosus L.) cultivation commonly relies on asexual reproduction which is easily impeded by many factors in agriculture production. Sexual reproduction might be a novel approach to improve the pineapple planting. However, genes controlling pineapple sexual reproduction are still remain elusive. In different organisms a conserved superfamily proteins known as ATP binding cassette (ABC) participate in various biological processes. Whereas, till today the ABC gene family has not been identified in pineapple. Here 100 ABC genes were identified in the pineapple genome and grouped into eight subfamilies (5 ABCAs, 20 ABCBs, 16 ABCCs, 2 ABCDs, one ABCEs, 5 ABCFs, 42 ABCGs and 9 ABCIs). Gene expression profiling revealed the dynamic expression pattern of ABC gene family in various tissues and different developmental stages. AcABCA5, AcABCB6, AcABCC4, AcABCC7, AcABCC9, AcABCG26, AcABCG38 and AcABCG42 exhibited preferential expression in ovule and stamen. Over-expression of AcABCG38 in the Arabidopsis double mutant abcg1-2abcg16-2 partially restored its pollen abortion defects, indicating that AcABCG38 plays important roles in pollen development. Our study on ABC gene family in pineapple provides useful information for developing sexual pineapple plantation which could be utilized to improve pineapple agricultural production. PMID:29312399

Genome-Wide Identification and Expression Profiling of ATP-Binding Cassette (ABC) Transporter Gene Family in Pineapple (Ananas comosus (L.) Merr.) Reveal the Role of AcABCG38 in Pollen Development.

PubMed

Chen, Piaojuan; Li, Yi; Zhao, Lihua; Hou, Zhimin; Yan, Maokai; Hu, Bingyan; Liu, Yanhui; Azam, Syed Muhammad; Zhang, Ziyan; Rahman, Zia Ur; Liu, Liping; Qin, Yuan

2017-01-01

Pineapple ( Ananas comosus L .) cultivation commonly relies on asexual reproduction which is easily impeded by many factors in agriculture production. Sexual reproduction might be a novel approach to improve the pineapple planting. However, genes controlling pineapple sexual reproduction are still remain elusive. In different organisms a conserved superfamily proteins known as ATP binding cassette (ABC) participate in various biological processes. Whereas, till today the ABC gene family has not been identified in pineapple. Here 100 ABC genes were identified in the pineapple genome and grouped into eight subfamilies (5 ABCAs , 20 ABCB s, 16 ABCCs , 2 ABCDs , one ABCEs , 5 ABCFs , 42 ABCGs and 9 ABCIs ). Gene expression profiling revealed the dynamic expression pattern of ABC gene family in various tissues and different developmental stages. AcABCA5, AcABCB6, AcABCC4 , AcABCC7 , AcABCC9 , AcABCG26 , AcABCG38 and AcABCG42 exhibited preferential expression in ovule and stamen. Over-expression of AcABCG38 in the Arabidopsis double mutant abcg1-2abcg16-2 partially restored its pollen abortion defects, indicating that AcABCG38 plays important roles in pollen development. Our study on ABC gene family in pineapple provides useful information for developing sexual pineapple plantation which could be utilized to improve pineapple agricultural production.

Neuroprotective effect of chondroitinase ABC on primary and secondary brain injury after stroke in hypertensive rats.

PubMed

Chen, Xin-ran; Liao, Song-jie; Ye, Lan-xiang; Gong, Qiong; Ding, Qiao; Zeng, Jin-sheng; Yu, Jian

2014-01-16

Focal cerebral infarction causes secondary damage in the ipsilateral ventroposterior thalamic nucleus (VPN). Chondroitin sulfate proteoglycans (CSPGs) are a family of putative inhibitory components, and its degradation by chondroitinase ABC (ChABC) promotes post-injury neurogenesis. This study investigated the role of ChABC in the primary and secondary injury post stroke in hypertension. Renovascular hypertensive Sprague-Dawley rats underwent middle cerebral artery occlusion (MCAO), and were subjected to continuous intra-infarct infusion of ChABC (0.12 U/d for 7 days) 24 h later. Neurological function was evaluated by a modified neurologic severity score. Neurons were counted in the peri-infarct region and the ipsilateral VPN 8 and 14 days after MCAO by Nissl staining and NeuN labeling. The expressions of CSPGs, growth-associated protein-43 (GAP-43) and synaptophysin (SYN) were detected with immunofluorescence or Western blotting. The intra-infarct infusion of ChABC, by degrading accumulated CSPGs, rescued neuronal loss and increased the levels of GAP-43 and SYN in both the ipsilateral cortex and VPN, indicating enhancd neuron survival as well as augmented axonal growth and synaptic plasticity, eventually improving overall neurological function. The study demonstrated that intra-infarct ChABC infusion could salvage the brain from both primary and secondary injury by the intervention on the neuroinhibitory environment post focal cerebral infarction. © 2013 Published by Elsevier B.V.

Earth Observations taken by the Expedition 20 crew

NASA Image and Video Library

2009-06-12

ISS020-E-009048 (12 June 2009) --- Sarychev Peak Volcano eruption, Kuril Islands, is featured in this image photographed by an Expedition 20 crew member on the International Space Station. A fortuitous orbit of the International Space Station allowed the astronauts this striking view of Sarychev volcano (Russia?s Kuril Islands, northeast of Japan) in an early stage of eruption on June 12, 2009. Sarychev Peak is one of the most active volcanoes in the Kuril Island chain and is located on the northwestern end of Matua Island. Prior to June 12, the last explosive eruption had occurred in 1989 with eruptions in 1986, 1976, 1954, and 1946 also producing lava flows. Ash from the June 2009 eruption has been detected 2407 kilometers ESE and 926 kilometers WNW of the volcano, and commercial airline flights are being diverted away from the region to minimize the danger of engine failures from ash intake. This detailed photograph is exciting to volcanologists because it captures several phenomena that occur during the earliest stages of an explosive volcanic eruption. The main column is one of a series of plumes that rose above Matua Island (48.1 degrees north latitude and 153.2 degrees east longitude) on June 12. The plume appears to be a combination of brown ash and white steam. The vigorously rising plume gives the steam a bubble-like appearance; the surrounding atmosphere has been shoved up by the shock wave of the eruption. The smooth white cloud on top may be water condensation that resulted from rapid rising and cooling of the air mass above the ash column, and is probably a transient feature (the eruption plume is starting to punch through). The structure also indicates that little to no shearing winds were present at the time to disrupt the plume. Another series of images, acquired 2-3 days after the start of eruptive activity, illustrate the effect of shearing winds on extent of the ash plumes across the Pacific Ocean. By contrast, a cloud of denser, gray ash ? most probably a pyroclastic flow -- appears to be hugging the ground, descending from the volcano summit. The rising eruption plume casts a shadow to the northwest of the island (bottom center). Brown ash at a lower altitude of the atmosphere spreads out above the ground at upper right. Low-level stratus clouds approach Matua Island from the east, wrapping around the lower slopes of the volcano. Only about 1.5 kilometers of the coastline of Matua Island (upper center) can be seen beneath the clouds and ash.

A Galactic Spectacle

NASA Image and Video Library

2017-12-08

NASA image release August 5, 2010 A beautiful new image of two colliding galaxies has been released by NASA's Great Observatories. The Antennae galaxies, located about 62 million light-years from Earth, are shown in this composite image from the Chandra X-ray Observatory (blue), the Hubble Space Telescope (gold and brown), and the Spitzer Space Telescope (red). The Antennae galaxies take their name from the long antenna-like "arms," seen in wide-angle views of the system. These features were produced by tidal forces generated in the collision. The collision, which began more than 100 million years ago and is still occurring, has triggered the formation of millions of stars in clouds of dusts and gas in the galaxies. The most massive of these young stars have already sped through their evolution in a few million years and exploded as supernovas. The X-ray image from Chandra shows huge clouds of hot, interstellar gas that have been injected with rich deposits of elements from supernova explosions. This enriched gas, which includes elements such as oxygen, iron, magnesium, and silicon, will be incorporated into new generations of stars and planets. The bright, point-like sources in the image are produced by material falling onto black holes and neutron stars that are remnants of the massive stars. Some of these black holes may have masses that are almost one hundred times that of the Sun. The Spitzer data show infrared light from warm dust clouds that have been heated by newborn stars, with the brightest clouds lying in the overlapping region between the two galaxies. The Hubble data reveal old stars and star-forming regions in gold and white, while filaments of dust appear in brown. Many of the fainter objects in the optical image are clusters containing thousands of stars. The Chandra image was taken in December 1999. The Spitzer image was taken in December 2003. The Hubble image was taken in July 2004, and February 2005. To read more go to: www.nasa.gov/mission_pages/chandra/multimedia/antennae.html NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe. Follow us on Twitter Join us on Facebook Credit: NASA, ESA, SAO, CXC, JPL-Caltech, and STScI Acknowledgment: G. Fabbiano and Z. Wang (Harvard-Smithsonian CfA), and B. Whitmore (STScI)

The Asset-Based Context Matrix: A Tool for Assessing Children's Learning Opportunities and Participation in Natural Environments

ERIC Educational Resources Information Center

Wilson, Linda L.; Mott, Donald W.; Batman, Deb

2004-01-01

This article provides a description of the "Asset-Based Context Matrix" (ABC Matrix). The ABC Matrix is an assessment tool for designing interventions for children in natural learning environments. The tool is based on research evidence indicating that children's learning is enhanced in contextually meaningful learning environments. The ABC Matrix…

Applying the Post-Modern Double ABC-X Model to Family Food Insecurity

ERIC Educational Resources Information Center

Hutson, Samantha; Anderson, Melinda; Swafford, Melinda

2015-01-01

This paper develops the argument that using the Double ABC-X model in family and consumer sciences (FCS) curricula is a way to educate nutrition and dietetics students regarding a family's perceptions of food insecurity. The Double ABC-X model incorporates ecological theory as a basis to explain family stress and the resulting adjustment and…

The Role of Activity Based Costing (ABC) in Educational Support Services: A White Paper.

ERIC Educational Resources Information Center

Edds, Daniel B.

Many front-line managers who are assuming more financial responsibility for their organizations find traditional cost accounting inadequate for their needs and are turning to Activity Based Costing (ABC). ABC is not a financial reporting system to serve the needs of regulatory agencies, but a tool that tracks costs from the general ledger…

So, You Need To Justify Your Existing ABC Program (or Lobby for a New One).

ERIC Educational Resources Information Center

Walsh, Jean Terry; Gillis, Lee

1998-01-01

Advice for adventure-based counseling (ABC) programs seeking funding includes setting realistic goals, designing an evaluation that matches program resources, and keeping it simple. Low recidivism is most important to grantors. Published research on ABC is scarce, but on-site process research generates useful data, and local schools and agencies…

Enjoyment of Euclidean Planar Triangles

ERIC Educational Resources Information Center

Srinivasan, V. K.

2013-01-01

This article adopts the following classification for a Euclidean planar [triangle]ABC, purely based on angles alone. A Euclidean planar triangle is said to be acute angled if all the three angles of the Euclidean planar [triangle]ABC are acute angles. It is said to be right angled at a specific vertex, say B, if the angle ?ABC is a right angle…

Molecular characteristics of Multidrug Resistant Acinetobacter baumannii Isolates from US soldiers from Iraq at the National Naval Medical Center

USDA-ARS?s Scientific Manuscript database

Background: Infections with A. baumannii-calcoaceticus complex (ABC) have complicated the care of combat casualties, and the spread and global dissemination of imipenem resistant (IR) clones of ABC have been reported in recent years. However, the epidemiological features of the IR-ABCs in military t...

Application of the Activity-Based Costing Method for Unit-Cost Calculation in a Hospital

PubMed Central

Javid, Mahdi; Hadian, Mohammad; Ghaderi, Hossein; Ghaffari, Shahram; Salehi, Masoud

2016-01-01

Background: Choosing an appropriate accounting system for hospital has always been a challenge for hospital managers. Traditional cost system (TCS) causes cost distortions in hospital. Activity-based costing (ABC) method is a new and more effective cost system. Objective: This study aimed to compare ABC with TCS method in calculating the unit cost of medical services and to assess its applicability in Kashani Hospital, Shahrekord City, Iran. Methods: This cross-sectional study was performed on accounting data of Kashani Hospital in 2013. Data on accounting reports of 2012 and other relevant sources at the end of 2012 were included. To apply ABC method, the hospital was divided into several cost centers and five cost categories were defined: wage, equipment, space, material, and overhead costs. Then activity centers were defined. ABC method was performed into two phases. First, the total costs of cost centers were assigned to activities by using related cost factors. Then the costs of activities were divided to cost objects by using cost drivers. After determining the cost of objects, the cost price of medical services was calculated and compared with those obtained from TCS. Results: The Kashani Hospital had 81 physicians, 306 nurses, and 328 beds with the mean occupancy rate of 67.4% during 2012. Unit cost of medical services, cost price of occupancy bed per day, and cost per outpatient service were calculated. The total unit costs by ABC and TCS were respectively 187.95 and 137.70 USD, showing 50.34 USD more unit cost by ABC method. ABC method represented more accurate information on the major cost components. Conclusion: By utilizing ABC, hospital managers have a valuable accounting system that provides a true insight into the organizational costs of their department. PMID:26234974

Massive Transfusion: The Revised Assessment of Bleeding and Transfusion (RABT) Score.

PubMed

Joseph, Bellal; Khan, Muhammad; Truitt, Michael; Jehan, Faisal; Kulvatunyou, Narong; Azim, Asad; Jain, Arpana; Zeeshan, Muhammad; Tang, Andrew; O'Keeffe, Terence

2018-05-21

Massive transfusion (MT) is a lifesaving treatment for trauma patients with hemorrhagic shock, assessed by Assessment of Blood Consumption (ABC) Score based on mechanism of injury, systolic blood pressure (SBP), tachycardia, and FAST exam. The aim of this study was to assess the performance of ABC score by replacing hypotension and tachycardia; with Shock Index (SI) > 1.0 and including pelvic fractures. We performed a 2-year (2014-2015) analysis of all high-level trauma activations and excluded patients dead on arrival. The ABC score was calculated using the 4-point score [blunt (0)/penetrating trauma (1), HR ≥ 120 (1), SBP ≤ 90 mmHg (1), and FAST positive (1)]. The Revised Assessment of Bleeding and Transfusion (RABT) score also included 4 points, calculated by replacing HR and SBP with SI > 1.0 and including pelvic fracture. AUROC compared performances of the two scores. A total of 380 patients were included. The overall MT was 27%. Patients receiving MT had higher median ABC scores [1.1 (0-2) vs. 1 (0-2), p = 0.15] and RABT scores [2 (1-3) vs. 1 (0-2), p < 0.001]. The RABT score had better discriminative power (AUROC = 0.828) compared to ABC score (AUROC = 0.617) for predicting the need for MT. Cutoff of RABT score ≥ 2 had a sensitivity of 84% and specificity of 77% for predicting need for MT compared to ABC score with 39% sensitivity and 72% specificity. Replacement of hypotension and tachycardia with a SI > 1.0 and inclusion of pelvic fracture enhanced discrimination of ABC score for predicting the need for MT. The current ABC score would benefit from revision to more appropriately identify patients requiring MT.

al3c: high-performance software for parameter inference using Approximate Bayesian Computation.

PubMed

Stram, Alexander H; Marjoram, Paul; Chen, Gary K

2015-11-01

The development of Approximate Bayesian Computation (ABC) algorithms for parameter inference which are both computationally efficient and scalable in parallel computing environments is an important area of research. Monte Carlo rejection sampling, a fundamental component of ABC algorithms, is trivial to distribute over multiple processors but is inherently inefficient. While development of algorithms such as ABC Sequential Monte Carlo (ABC-SMC) help address the inherent inefficiencies of rejection sampling, such approaches are not as easily scaled on multiple processors. As a result, current Bayesian inference software offerings that use ABC-SMC lack the ability to scale in parallel computing environments. We present al3c, a C++ framework for implementing ABC-SMC in parallel. By requiring only that users define essential functions such as the simulation model and prior distribution function, al3c abstracts the user from both the complexities of parallel programming and the details of the ABC-SMC algorithm. By using the al3c framework, the user is able to scale the ABC-SMC algorithm in parallel computing environments for his or her specific application, with minimal programming overhead. al3c is offered as a static binary for Linux and OS-X computing environments. The user completes an XML configuration file and C++ plug-in template for the specific application, which are used by al3c to obtain the desired results. Users can download the static binaries, source code, reference documentation and examples (including those in this article) by visiting https://github.com/ahstram/al3c. astram@usc.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Psychometric properties of the Activities-specific Balance Confidence Scale among individuals with a lower-limb amputation.

PubMed

Miller, William C; Deathe, A Barry; Speechley, Mark

2003-05-01

To evaluate the internal consistency, test-retest reliability, and construct validity of the Activities-specific Balance Confidence (ABC) Scale among people who have a lower-limb amputation. Retest design. A university-affiliated outpatient amputee clinic in Ontario. Two samples of individuals who have unilateral transtibial and transfemoral amputation. Sample 1 (n=54) was a consecutive and sample 2 (n=329) a convenience sample of all members of the clinic population. Not applicable. Repeated application of the ABC Scale, a 16-item questionnaire that assesses confidence in performing various mobility-related tasks. Correlation to test hypothesized relationships between the ABC Scale and the 2-minute walk (2MWT) and the timed up-and-go (TUG) tests; and assessment of the ability of the ABC Scale to discriminate among groups based on amputation cause, amputation level, mobility device use, automatic stepping ability, wearing time, stair climbing ability, and walking distance. Test-retest reliability (intraclass correlation coefficient) of the ABC Scale was .91 (95% confidence interval [CI], .84-.95) with individual item test-retest coefficients ranging from .53 to .87. Internal consistency, measured by Cronbach alpha, was .95. Hypothesized associations with the 2MWT and TUG test were observed with correlations of .72 (95% CI, .56-.84) and -.70 (95% CI, -.82 to -.53), respectively. The ABC Scale discriminated between all groups except those based on amputation level. Balance confidence, as measured by the ABC Scale, is a construct that provides unique information potentially useful to clinicians who provide amputee rehabilitation. The ABC Scale is reliable, with strong support for validity. Study of the scale's responsiveness is recommended.

A Large Animal Model that Recapitulates the Spectrum of Human Intervertebral Disc Degeneration

PubMed Central

Gullbrand, Sarah E.; Malhotra, Neil R.; Schaer, Thomas P.; Zawacki, Zosia; Martin, John T.; Bendigo, Justin R.; Milby, Andrew H.; Dodge, George R.; Vresilovic, Edward J.; Elliott, Dawn M.; Mauck, Robert L.; Smith, Lachlan J.

2016-01-01

Objective The objective of this study was to establish a large animal model that recapitulates the spectrum of intervertebral disc degeneration that occurs in humans and which is suitable for pre-clinical evaluation of a wide range of experimental therapeutics. Design Degeneration was induced in the lumbar intervertebral discs of large frame goats by either intradiscal injection of chondroitinase ABC (ChABC) over a range of dosages (0.1U, 1U or 5U) or subtotal nucleotomy. Radiographs were used to assess disc height changes over 12 weeks. Degenerative changes to the discs and endplates were assessed via magnetic resonance imaging (MRI), semi-quantitative histological grading, micro-computed tomography (µCT), and measurement of disc biomechanical properties. Results Degenerative changes were observed for all interventions that ranged from mild (0.1U ChABC) to moderate (1U ChABC and nucleotomy) to severe (5U ChABC). All groups showed progressive reductions in disc height over 12 weeks. Histological scores were significantly increased in the 1U and 5U ChABC groups. Reductions in T2 and T1ρ, and increased Pfirrmann grade were observed on MRI. Resorption and remodeling of the cortical boney endplate adjacent to ChABC injected discs also occurred. Spine segment range of motion was greater and compressive modulus was lower in 1U ChABC and nucleotomy discs compared to intact. Conclusions A large animal model of disc degeneration was established that recapitulates the spectrum of structural, compositional and biomechanical features of human disc degeneration. This model may serve as a robust platform for evaluating the efficacy of therapeutics targeted towards varying degrees of disc degeneration. PMID:27568573

Global Discrete Artificial Boundary Conditions for Time-Dependent Wave Propagation

NASA Technical Reports Server (NTRS)

Ryabenkii, V. S.; Tsynkov, S. V.; Turchaninov, V. I.; Bushnell, Dennis M. (Technical Monitor)

2001-01-01

We construct global artificial boundary conditions (ABCs) for the numerical simulation of wave processes on unbounded domains using a special non-deteriorating algorithm that has been developed previously for the long-term computation of wave-radiation solutions. The ABCs are obtained directly for the discrete formulation of the problem; in so doing, neither a rational approximation of 'non-reflecting kernels,' nor discretization of the continuous boundary conditions is required. The extent of temporal nonlocality of the new ABCs appears fixed and limited; in addition, the ABCs can handle artificial boundaries of irregular shape on regular grids with no fitting/adaptation needed and no accuracy loss induced. The non-deteriorating algorithm, which is the core of the new ABCs is inherently three-dimensional, it guarantees temporally uniform grid convergence of the solution driven by a continuously operating source on arbitrarily long time intervals, and provides unimprovable linear computational complexity with respect to the grid dimension. The algorithm is based on the presence of lacunae, i.e., aft fronts of the waves, in wave-type solutions in odd-dimension spaces, It can, in fact, be built as a modification on top of any consistent and stable finite-difference scheme, making its grid convergence uniform in time and at the same time keeping the rate of convergence the same as that of the non-modified scheme. In the paper, we delineate the construction of the global lacunae-based ABCs in the framework of a discretized wave equation. The ABCs are obtained for the most general formulation of the problem that involves radiation of waves by moving sources (e.g., radiation of acoustic waves by a maneuvering aircraft). We also present systematic numerical results that corroborate the theoretical design properties of the ABCs' algorithm.

Balance self-efficacy in older adults following inpatient rehabilitation.

PubMed

Kuys, Suzanne S; Donovan, Jacquelin; Mattin, Sarah; Low Choy, Nancy L

2015-06-01

Older adults discharging from inpatient rehabilitation were investigated to determine change in self-efficacy at 1 month after discharge, the relationship with discharge balance performance and physical function, and the influence of diagnosis. A prospective cohort of 101 adults older than 50 years of age, 43% men, average age 75.84 (SD 9.8) years, were recruited at discharge from inpatient rehabilitation. Balance self-efficacy was assessed using Activities-specific Balance Confidence (ABC) scale at discharge and 1 month following discharge. Balance and physical function were measured at discharge using the Functional Independence Measure, Balance Outcome Measure for Elder Rehabilitation, Modified Elderly Mobility Scale and gait speed. At discharge, balance self-efficacy was moderate (ABC score 62, SD 23) and did not change at follow-up. When grouped by discharge self-efficacy (ABC scores: low<50; moderate 51-80; high>80), significant between-group differences were found for balance (P=0.005) and physical function (P=0.035). At the 1-month follow-up, those with low discharge balance self-efficacy showed improvement (mean-change ABC score 12, 95% confidence interval 2-22) and those with high discharge balance self-efficacy had lower scores (mean-change ABC score 18, 95% confidence interval -8 to -28). Differences in ABC change scores were also found between diagnostic groups (F=3.740, P=0.03), with the orthopaedic group improving (ABC mean change=8) and the general frailty group showing a decrease in confidence (ABC mean change=10). The differences in balance self-efficacy change at 1 month following discharge were related to self-efficacy level at discharge and clinical group requiring rehabilitation. Clinicians need to be aware of these changes as patients are prepared for discharge.

Chemiluminescence Immunoassay for the Detection of Antibodies against the 2C and 3ABC Nonstructural Proteins Induced by Infecting Pigs with Foot-and-Mouth Disease Virus.

PubMed

Liu, Zezhong; Shao, Junjun; Zhao, Furong; Zhou, Guangqing; Gao, Shandian; Liu, Wei; Lv, Jianliang; Li, Xiumei; Li, Yangfan; Chang, Huiyun; Zhang, Yongguang

2017-08-01

The potential diagnostic value of chemiluminescence immunoassays (CLIAs) has been accepted in recent years, although their use for foot-and-mouth disease (FMD) diagnostics has not been reported. Full-length 3ABC and 2C proteins were expressed in bacteria and purified by affinity chromatography to develop a rapid and accurate approach to distinguish pigs infected with foot-and-mouth disease virus (FMDV) from vaccinated pigs. The recombinant proteins were then used as antigens to develop two CLIAs for the detection of antibodies against nonstructural viral proteins. The diagnostic performance of the two assays was compared by analyzing serum from pigs (naive pigs, n = 63; vaccinated, uninfected pigs, n = 532; naive, infected pigs, n = 117) with a known infection status. The 3ABC-2C CLIA had a higher accuracy rate, with a diagnostic sensitivity of 100% and a diagnostic specificity of 96.5%, than the 3ABC CLIA, which had a diagnostic sensitivity of 95.7% and a diagnostic specificity of 96.0%. The results of the 3ABC-2C CLIA also had a high rate of concordance with those of two commercial FMDV enzyme-linked immunosorbent assay (ELISA) kits used to assess serum collected from 962 pigs in the field (96.2% and 97.8%, respectively). The 3ABC-2C CLIA detected infection in serum samples from infected pigs earlier than the commercial ELISA kits. In addition, the 3ABC-2C CLIA produced results within 15 min. On the basis of these findings, the 3ABC-2C CLIA could serve as the foundation for the development of penside FMD diagnostics and offers an alternative method to detect FMDV infections. Copyright © 2017 American Society for Microbiology.

Inactivation and deficiency of core proteins of photosystems I and II caused by genetical phylloquinone and plastoquinone deficiency but retained lamellar structure in a T-DNA mutant of Arabidopsis.

PubMed

Shimada, Hiroshi; Ohno, Ryoichi; Shibata, Masaru; Ikegami, Isamu; Onai, Kiyoshi; Ohto, Masa-aki; Takamiya, Ken-ichiro

2005-02-01

Phylloquinone, a substituted 1,4-naphthoquinone with an 18-carbon-saturated phytyl tail, functions as a bound one-electron carrier cofactor at the A1 site of photosystem I (PSI). A Feldmann tag line mutant, no. 2755 (designated as abc4 hereafter), showed pale-green young leaves and white old leaves. The mutated nuclear gene encoded 1,4-dihydroxy-2-naphtoic acid phytyltransferase, an enzyme of phylloquinone biosynthesis, and high-performance liquid chromatography analysis revealed that the abc4 mutant contained no phylloquinone, and only about 3% plastoquinone. Photooxidation of P700 of PSI in the abc4 mutant was not observed, and reduced-versus-oxidized difference spectroscopy indicated that the abc4 mutant had no P700. The maximum quantum yield of photosystem II (PSII) in the abc4 mutant was much decreased, and the electron transfer from PSII to PSI in the abc4 mutant did not occur. For the pale-green leaves of the abc4 mutant plant, the ultrastructure of the chloroplasts was almost the same as that of the wild-type plant. However, the chloroplasts in the albino leaves of the mutant were smaller and had a lot of grana thylakoids and few stroma thylakoids. The amounts of PSI and PSII core subunits in the abc4 mutant were significantly decreased compared with those in the wild type. These results suggested that a deficiency of phylloquinone in PSI caused the abolishment of PSI and a partial defect of PSII due to a significant decrease of plastoquinone, but did not influence the ultrastructure of the chloroplasts in young leaves.

Global Discrete Artificial Boundary Conditions for Time-Dependent Wave Propagation

NASA Astrophysics Data System (ADS)

Ryaben'kii, V. S.; Tsynkov, S. V.; Turchaninov, V. I.

2001-12-01

We construct global artificial boundary conditions (ABCs) for the numerical simulation of wave processes on unbounded domains using a special nondeteriorating algorithm that has been developed previously for the long-term computation of wave-radiation solutions. The ABCs are obtained directly for the discrete formulation of the problem; in so doing, neither a rational approximation of “nonreflecting kernels” nor discretization of the continuous boundary conditions is required. The extent of temporal nonlocality of the new ABCs appears fixed and limited; in addition, the ABCs can handle artificial boundaries of irregular shape on regular grids with no fitting/adaptation needed and no accuracy loss induced. The nondeteriorating algorithm, which is the core of the new ABCs, is inherently three-dimensional, it guarantees temporally uniform grid convergence of the solution driven by a continuously operating source on arbitrarily long time intervals and provides unimprovable linear computational complexity with respect to the grid dimension. The algorithm is based on the presence of lacunae, i.e., aft fronts of the waves, in wave-type solutions in odd-dimensional spaces. It can, in fact, be built as a modification on top of any consistent and stable finite-difference scheme, making its grid convergence uniform in time and at the same time keeping the rate of convergence the same as that of the unmodified scheme. In this paper, we delineate the construction of the global lacunae-based ABCs in the framework of a discretized wave equation. The ABCs are obtained for the most general formulation of the problem that involves radiation of waves by moving sources (e.g., radiation of acoustic waves by a maneuvering aircraft). We also present systematic numerical results that corroborate the theoretical design properties of the ABC algorithm.

A cost management model for hospital food and nutrition in a public hospital.

PubMed

Neriz, Liliana; Núñez, Alicia; Ramis, Francisco

2014-11-13

In Chile, the use of costing systems in the public sector is limited. The Ministry of Health requires hospitals to manage themselves with the aim of decentralizing health care services and increasing their quality. However, self-management with a lack of accounting information is almost impossible. On the other hand, nutrition department costs have barely been studied before, and there are no studies specifically for activity based costing (ABC) systems. ABC focuses on the process and traces health care activities to gain a more accurate measurement of the object costs and the financial performance of an organization. This paper uses ABC in a nutrition unit of a public hospital of high complexity to determine costs associated with the different meals for inpatients. The paper also provides an activity based management (ABM) analysis for this unit. The results show positive effects on the reduction of costs for the nutrition department after implementing ABC/ABM. Therefore, there are opportunities to improve the profitability of the area and the results could also be replicated to other areas in the hospital. ABC shed light on the amount of nutritionist time devoted to completing paperwork, and as a result, system changes were introduced to reduce this burden and allow them to focus on more relevant activities. Additional efficiencies were achieved through the elimination of non-value adding activities and automation of reports. ABC reduced the cost of the nutrition department and could produce similar results in other areas of the hospital. This is a practical application of a financial management tool, ABC, which would be useful for hospital managers to reduce costs and improve the management of the unit. This paper takes ABC and examines its use in an area, which has had little exposure to the benefits of this tool.

Application of the Activity-Based Costing Method for Unit-Cost Calculation in a Hospital.

PubMed

Javid, Mahdi; Hadian, Mohammad; Ghaderi, Hossein; Ghaffari, Shahram; Salehi, Masoud

2015-05-17

Choosing an appropriate accounting system for hospital has always been a challenge for hospital managers. Traditional cost system (TCS) causes cost distortions in hospital. Activity-based costing (ABC) method is a new and more effective cost system. This study aimed to compare ABC with TCS method in calculating the unit cost of medical services and to assess its applicability in Kashani Hospital, Shahrekord City, Iran.‎ This cross-sectional study was performed on accounting data of Kashani Hospital in 2013. Data on accounting reports of 2012 and other relevant sources at the end of 2012 were included. To apply ABC method, the hospital was divided into several cost centers and five cost categories were defined: wage, equipment, space, material, and overhead costs. Then activity centers were defined. ABC method was performed into two phases. First, the total costs of cost centers were assigned to activities by using related cost factors. Then the costs of activities were divided to cost objects by using cost drivers. After determining the cost of objects, the cost price of medical services was calculated and compared with those obtained from TCS.‎ The Kashani Hospital had 81 physicians, 306 nurses, and 328 beds with the mean occupancy rate of 67.4% during 2012. Unit cost of medical services, cost price of occupancy bed per day, and cost per outpatient service were calculated. The total unit costs by ABC and TCS were respectively 187.95 and 137.70 USD, showing 50.34 USD more unit cost by ABC method. ABC method represented more accurate information on the major cost components. By utilizing ABC, hospital managers have a valuable accounting system that provides a true insight into the organizational costs of their department.

“ABC”—The Awareness-Body-Chart: A new tool assessing body awareness

PubMed Central

Avian, Alexander; Macheiner, Tanja; Salchinger, Beate; Dalkner, Nina; Fellendorf, Frederike T.; Birner, Armin; Bengesser, Susanne A.; Platzer, Martina; Kapfhammer, Hans-Peter; Probst, Michel; Reininghaus, Eva Z.

2017-01-01

Background Despite the importance of body awareness for health and well-being there is still a lack of valid assessment tools to scan proper body awareness. To respond to the limitations of questionnaires (reading/interpretation problems) the Awareness-Body-Chart (ABC) was designed to assess body awareness by colouring 51 regions according to their awareness. The objective of this study was to investigate the psychometric characteristics of the ABC. Methods In a questionnaire-study, 106 students in Graz (79 females, 27 males, age median 21 (IQR 20–23) years) filled in the ABC, furthermore a German body awareness questionnaire „KEKS”, and the Beck Depression Inventory II. Factor structure, internal consistency, and retest reliability of the ABC were investigated. Correlations of the ABC with the KEKS and the Beck Depression Inventory II and comparisons of subgroups were conducted. Results Through factor analyses, 14 factors with clear assignments to body parts could be categorized: cranium, face, cervical/lumbar region, chest/abdomen, back, shoulder, upper arm, lower arm/elbow, hand, genital area, thigh/hip, knee, lower leg, and foot. The 14 body parts and the total score showed acceptable to high Cronbach’s alphas (α = .64 - .97). The test-retest reliability showed values between ρ = .71 and ρ = .96. The correlation of the ABC and KEKS (r = .66, p < .001) confirmed validity. Further indications of validity could be seen in comparisons of subgroups and in correlations with the Beck Depression Inventory II. Conclusion The ABC proved good psychometric properties with acceptable to high internal consistency, acceptable to high retest reliability and high construct validity. It is an easy-to-use tool for clinical settings and research. The ABC opens new insights into body awareness-patterns of various subgroups. PMID:29036217

New Enhanced Artificial Bee Colony (JA-ABC5) Algorithm with Application for Reactive Power Optimization

PubMed Central

2015-01-01

The standard artificial bee colony (ABC) algorithm involves exploration and exploitation processes which need to be balanced for enhanced performance. This paper proposes a new modified ABC algorithm named JA-ABC5 to enhance convergence speed and improve the ability to reach the global optimum by balancing exploration and exploitation processes. New stages have been proposed at the earlier stages of the algorithm to increase the exploitation process. Besides that, modified mutation equations have also been introduced in the employed and onlooker-bees phases to balance the two processes. The performance of JA-ABC5 has been analyzed on 27 commonly used benchmark functions and tested to optimize the reactive power optimization problem. The performance results have clearly shown that the newly proposed algorithm has outperformed other compared algorithms in terms of convergence speed and global optimum achievement. PMID:25879054

New enhanced artificial bee colony (JA-ABC5) algorithm with application for reactive power optimization.

PubMed

Sulaiman, Noorazliza; Mohamad-Saleh, Junita; Abro, Abdul Ghani

2015-01-01

The standard artificial bee colony (ABC) algorithm involves exploration and exploitation processes which need to be balanced for enhanced performance. This paper proposes a new modified ABC algorithm named JA-ABC5 to enhance convergence speed and improve the ability to reach the global optimum by balancing exploration and exploitation processes. New stages have been proposed at the earlier stages of the algorithm to increase the exploitation process. Besides that, modified mutation equations have also been introduced in the employed and onlooker-bees phases to balance the two processes. The performance of JA-ABC5 has been analyzed on 27 commonly used benchmark functions and tested to optimize the reactive power optimization problem. The performance results have clearly shown that the newly proposed algorithm has outperformed other compared algorithms in terms of convergence speed and global optimum achievement.

Enhancing artificial bee colony algorithm with self-adaptive searching strategy and artificial immune network operators for global optimization.

PubMed

Chen, Tinggui; Xiao, Renbin

2014-01-01

Artificial bee colony (ABC) algorithm, inspired by the intelligent foraging behavior of honey bees, was proposed by Karaboga. It has been shown to be superior to some conventional intelligent algorithms such as genetic algorithm (GA), artificial colony optimization (ACO), and particle swarm optimization (PSO). However, the ABC still has some limitations. For example, ABC can easily get trapped in the local optimum when handing in functions that have a narrow curving valley, a high eccentric ellipse, or complex multimodal functions. As a result, we proposed an enhanced ABC algorithm called EABC by introducing self-adaptive searching strategy and artificial immune network operators to improve the exploitation and exploration. The simulation results tested on a suite of unimodal or multimodal benchmark functions illustrate that the EABC algorithm outperforms ACO, PSO, and the basic ABC in most of the experiments.

Enhancing Artificial Bee Colony Algorithm with Self-Adaptive Searching Strategy and Artificial Immune Network Operators for Global Optimization

PubMed Central

Chen, Tinggui; Xiao, Renbin

2014-01-01

Artificial bee colony (ABC) algorithm, inspired by the intelligent foraging behavior of honey bees, was proposed by Karaboga. It has been shown to be superior to some conventional intelligent algorithms such as genetic algorithm (GA), artificial colony optimization (ACO), and particle swarm optimization (PSO). However, the ABC still has some limitations. For example, ABC can easily get trapped in the local optimum when handing in functions that have a narrow curving valley, a high eccentric ellipse, or complex multimodal functions. As a result, we proposed an enhanced ABC algorithm called EABC by introducing self-adaptive searching strategy and artificial immune network operators to improve the exploitation and exploration. The simulation results tested on a suite of unimodal or multimodal benchmark functions illustrate that the EABC algorithm outperforms ACO, PSO, and the basic ABC in most of the experiments. PMID:24772023

Starting with ABC and Finishing with XYZ: What Financial Reporting Model Best Fits a Faculty and Why?

ERIC Educational Resources Information Center

Berry, Prudence Jane

2014-01-01

This article looks at the range of financial reporting models available for use in the Australian higher education sector, the possible application of activity-based costing (ABC) in faculties and the eventual rejection of ABC in favour of a more qualitative model designed specifically for use in one institution, in a particular Faculty. The…

Use of the K-ABC with Children in Zaire, Africa: An Evaluation of the Sequential-Simultaneous Processing Distinction within an Intercultural Context.

ERIC Educational Resources Information Center

Giordani, Bruno; And Others

1996-01-01

Evaluation of the Kaufman Assessment Battery for Children (K-ABC) with 130 primary school children in Zaire revealed three findings: (1) the distinction between sequential processing and simultaneous processing was valid; (2) the K-ABC discriminated effectively among grade levels, health and family environment variables, and tribal membership; and…

The ABCs of School Choice: The Comprehensive Guide to Every Private School Choice Program in America. 2013 Edition

ERIC Educational Resources Information Center

Friedman Foundation for Educational Choice, 2013

2013-01-01

"The ABCs of School Choice" is the most comprehensive guide to every private school choice program in America, showcasing the voucher, tax-credit scholarship, education savings accounts, and individual tax credit/deduction programs currently operating in 21 states and Washington, D.C. "The ABCs of School Choice" provides policymakers, advocates,…

A rotor technology assessment of the advancing blade concept

NASA Technical Reports Server (NTRS)

Pleasants, W. A.

1983-01-01

A rotor technology assessment of the Advancing Blade Concept (ABC) was conducted in support of a preliminary design study. The analytical methodology modifications and inputs, the correlation, and the results of the assessment are documented. The primary emphasis was on the high-speed forward flight performance of the rotor. The correlation data base included both the wind tunnel and the flight test results. An advanced ABC rotor design was examined; the suitability of the ABC for a particular mission was not considered. The objective of this technology assessment was to provide estimates of the performance potential of an advanced ABC rotor designed for high speed forward flight.

A tutorial on activity-based costing of electronic health records.

PubMed

Federowicz, Marie H; Grossman, Mila N; Hayes, Bryant J; Riggs, Joseph

2010-01-01

As the American Recovery and Restoration Act of 2009 allocates $19 billion to health information technology, it will be useful for health care managers to project the true cost of implementing an electronic health record (EHR). This study presents a step-by-step guide for using activity-based costing (ABC) to estimate the cost of an EHR. ABC is a cost accounting method with a "top-down" approach for estimating the cost of a project or service within an organization. The total cost to implement an EHR includes obvious costs, such as licensing fees, and hidden costs, such as impact on productivity. Unlike other methods, ABC includes all of the organization's expenditures and is less likely to miss hidden costs. Although ABC is used considerably in manufacturing and other industries, it is a relatively new phenomenon in health care. ABC is a comprehensive approach that the health care field can use to analyze the cost-effectiveness of implementing EHRs. In this article, ABC is applied to a health clinic that recently implemented an EHR, and the clinic is found to be more productive after EHR implementation. This methodology can help health care administrators assess the impact of a stimulus investment on organizational performance.

Accelerator-based conversion (ABC) of weapons plutonium: Plant layout study and related design issues

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cowell, B.S.; Fontana, M.H.; Krakowski, R.A.

1995-04-01

In preparation for and in support of a detailed R and D Plan for the Accelerator-Based Conversion (ABC) of weapons plutonium, an ABC Plant Layout Study was conducted at the level of a pre-conceptual engineering design. The plant layout is based on an adaptation of the Molten-Salt Breeder Reactor (MSBR) detailed conceptual design that was completed in the early 1070s. Although the ABC Plant Layout Study included the Accelerator Equipment as an essential element, the engineering assessment focused primarily on the Target; Primary System (blanket and all systems containing plutonium-bearing fuel salt); the Heat-Removal System (secondary-coolant-salt and supercritical-steam systems); Chemicalmore » Processing; Operation and Maintenance; Containment and Safety; and Instrumentation and Control systems. Although constrained primarily to a reflection of an accelerator-driven (subcritical) variant of MSBR system, unique features and added flexibilities of the ABC suggest improved or alternative approaches to each of the above-listed subsystems; these, along with the key technical issues in need of resolution through a detailed R&D plan for ABC are described on the bases of the ``strawman`` or ``point-of-departure`` plant layout that resulted from this study.« less

Harnessing Drug Resistance: Using ABC Transporter Proteins To Target Cancer Cells

PubMed Central

Leitner, Heather M.; Kachadourian, Remy; Day, Brian J.

2007-01-01

The ATP-binding cassette (ABC) class of proteins is one of the most functionally diverse transporter families found in biological systems. Although the abundance of ABC proteins varies between species, they are highly conserved in sequence and often demonstrate similar functions across prokaryotic and eukaryotic organisms. Beginning with a brief summary of the events leading to our present day knowledge of ABC transporters, the purpose of this review is to discuss the potential for utilizing ABC transporters as a means for cellular glutathione (GSH) modulation. GSH is one of the most abundant thiol antioxidants in cells. It is involved in cellular division, protein and DNA synthesis, maintenance of cellular redox status and xenobiotic metabolism. Cellular GSH levels are often altered in many disease states including cancer. Over the past two decades there has been considerable emphasis on methods to sensitize cancer cells to chemotherapeutics and ionization radiation therapy by GSH depletion. We contend that ABC transporters, particularly multi-drug resistant proteins (MRPs), may be used as therapeutic targets for applications aimed at modulation of GSH levels. This review will emphasize MRP-mediated modulation of intracellular GSH levels as a potential alternative and adjunctive approach for cancer therapy. PMID:17585883

Comparison of mechanistic transport cycle models of ABC exporters.

PubMed

Szöllősi, Dániel; Rose-Sperling, Dania; Hellmich, Ute A; Stockner, Thomas

2018-04-01

ABC (ATP binding cassette) transporters, ubiquitous in all kingdoms of life, carry out essential substrate transport reactions across cell membranes. Their transmembrane domains bind and translocate substrates and are connected to a pair of nucleotide binding domains, which bind and hydrolyze ATP to energize import or export of substrates. Over four decades of investigations into ABC transporters have revealed numerous details from atomic-level structural insights to their functional and physiological roles. Despite all these advances, a comprehensive understanding of the mechanistic principles of ABC transporter function remains elusive. The human multidrug resistance transporter ABCB1, also referred to as P-glycoprotein (P-gp), is one of the most intensively studied ABC exporters. Using ABCB1 as the reference point, we aim to compare the dominating mechanistic models of substrate transport and ATP hydrolysis for ABC exporters and to highlight the experimental and computational evidence in their support. In particular, we point out in silico studies that enhance and complement available biochemical data. "This article is part of a Special Issue entitled: Beyond the Structure-Function Horizon of Membrane Proteins edited by Ute Hellmich, Rupak Doshi and Benjamin McIlwain." Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation.

PubMed

Cornuet, Jean-Marie; Santos, Filipe; Beaumont, Mark A; Robert, Christian P; Marin, Jean-Michel; Balding, David J; Guillemaud, Thomas; Estoup, Arnaud

2008-12-01

Genetic data obtained on population samples convey information about their evolutionary history. Inference methods can extract part of this information but they require sophisticated statistical techniques that have been made available to the biologist community (through computer programs) only for simple and standard situations typically involving a small number of samples. We propose here a computer program (DIY ABC) for inference based on approximate Bayesian computation (ABC), in which scenarios can be customized by the user to fit many complex situations involving any number of populations and samples. Such scenarios involve any combination of population divergences, admixtures and population size changes. DIY ABC can be used to compare competing scenarios, estimate parameters for one or more scenarios and compute bias and precision measures for a given scenario and known values of parameters (the current version applies to unlinked microsatellite data). This article describes key methods used in the program and provides its main features. The analysis of one simulated and one real dataset, both with complex evolutionary scenarios, illustrates the main possibilities of DIY ABC. The software DIY ABC is freely available at http://www.montpellier.inra.fr/CBGP/diyabc.

Characterization and regulation of the resistance-nodulation-cell division-type multidrug efflux pumps MdtABC and MdtUVW from the fire blight pathogen Erwinia amylovora.

PubMed

Pletzer, Daniel; Weingart, Helge

2014-07-11

The Gram-negative bacterium Erwinia amylovora is the causal agent of the devastating disease fire blight in rosaceous plants such as apple, pear, quince, raspberry, and cotoneaster. In order to survive and multiply in a host, microbes must be able to circumvent the toxic effects of antimicrobial plant compounds, such as flavonoids and tannins. E. amylovora uses multidrug efflux transporters that recognize and actively export toxic compounds out of the cells. Here, two heterotrimeric resistance-nodulation-cell division (RND)-type multidrug efflux pumps, MdtABC and MdtUVW, from E. amylovora were identified. These RND systems are unusual in that they contain two different RND proteins forming a functional pump. To find the substrate specificities of the two efflux systems, we overexpressed the transporters in a hypersensitive mutant lacking the major RND pump AcrB. Both transporters mediated resistance to several flavonoids, fusidic acid and novobiocin. Additionally, MdtABC mediated resistance towards josamycin, bile salts and silver nitrate, and MdtUVW towards clotrimazole. The ability of the mdtABC- and mdtUVW-deficient mutants to multiply in apple rootstock was reduced. Quantitative RT-PCR analyses revealed that the expression of the transporter genes was induced during infection of apple rootstock. The polyphenolic plant compound tannin, as well as the heavy metal salt tungstate was found to induce the expression of mdtABC. Finally, the expression of the mdtABC genes was shown to be regulated by BaeR, the response regulator of the two-component system BaeSR, a cell envelope stress response system that controls the adaptive responses to changes in the environment. The expression of MdtABC and MdtUVW is induced during growth of E. amylovora in planta. We identified the plant polyphenol tannin as inducer of mdtABC expression. The reduced ability of the mdtABC- and mdtUVW-deficient mutants to multiply in apple rootstock suggests that the efflux pumps are involved in resistance to plant antimicrobials, maybe including flavonoids, which were identified as substrates of both pumps. Furthermore, we found that the mdtABC operon belongs to the regulon of the two-component regulator BaeR suggesting a role of this RND transporter in the cell envelope stress response of E. amylovora.

Characterization and regulation of the Resistance-Nodulation-Cell Division-type multidrug efflux pumps MdtABC and MdtUVW from the fire blight pathogen Erwinia amylovora

PubMed Central

2014-01-01

Background The Gram-negative bacterium Erwinia amylovora is the causal agent of the devastating disease fire blight in rosaceous plants such as apple, pear, quince, raspberry, and cotoneaster. In order to survive and multiply in a host, microbes must be able to circumvent the toxic effects of antimicrobial plant compounds, such as flavonoids and tannins. E. amylovora uses multidrug efflux transporters that recognize and actively export toxic compounds out of the cells. Here, two heterotrimeric resistance-nodulation-cell division (RND)-type multidrug efflux pumps, MdtABC and MdtUVW, from E. amylovora were identified. These RND systems are unusual in that they contain two different RND proteins forming a functional pump. Results To find the substrate specificities of the two efflux systems, we overexpressed the transporters in a hypersensitive mutant lacking the major RND pump AcrB. Both transporters mediated resistance to several flavonoids, fusidic acid and novobiocin. Additionally, MdtABC mediated resistance towards josamycin, bile salts and silver nitrate, and MdtUVW towards clotrimazole. The ability of the mdtABC- and mdtUVW-deficient mutants to multiply in apple rootstock was reduced. Quantitative RT-PCR analyses revealed that the expression of the transporter genes was induced during infection of apple rootstock. The polyphenolic plant compound tannin, as well as the heavy metal salt tungstate was found to induce the expression of mdtABC. Finally, the expression of the mdtABC genes was shown to be regulated by BaeR, the response regulator of the two-component system BaeSR, a cell envelope stress response system that controls the adaptive responses to changes in the environment. Conclusions The expression of MdtABC and MdtUVW is induced during growth of E. amylovora in planta. We identified the plant polyphenol tannin as inducer of mdtABC expression. The reduced ability of the mdtABC- and mdtUVW-deficient mutants to multiply in apple rootstock suggests that the efflux pumps are involved in resistance to plant antimicrobials, maybe including flavonoids, which were identified as substrates of both pumps. Furthermore, we found that the mdtABC operon belongs to the regulon of the two-component regulator BaeR suggesting a role of this RND transporter in the cell envelope stress response of E. amylovora. PMID:25012600

Searching for the fastest dynamo: laminar ABC flows.

PubMed

Alexakis, Alexandros

2011-08-01

The growth rate of the dynamo instability as a function of the magnetic Reynolds number R(M) is investigated by means of numerical simulations for the family of the Arnold-Beltrami-Childress (ABC) flows and for two different forcing scales. For the ABC flows that are driven at the largest available length scale, it is found that, as the magnetic Reynolds number is increased: (a) The flow that results first in a dynamo is the 2 1/2-dimensional flow for which A=B and C=0 (and all permutations). (b) The second type of flow that results in a dynamo is the one for which A=B≃2C/5 (and permutations). (c) The most symmetric flow, A=B=C, is the third type of flow that results in a dynamo. (d) As R(M) is increased, the A=B=C flow stops being a dynamo and transitions from a local maximum to a third-order saddle point. (e) At larger R(M), the A=B=C flow reestablishes itself as a dynamo but remains a saddle point. (f) At the largest examined R(M), the growth rate of the 2 1/2-dimensional flows starts to decay, the A=B=C flow comes close to a local maximum again, and the flow A=B≃2C/5 (and permutations) results in the fastest dynamo with growth rate γ≃0.12 at the largest examined R(M). For the ABC flows that are driven at the second largest available length scale, it is found that (a) the 2 1/2-dimensional flows A=B,C=0 (and permutations) are again the first flows that result in a dynamo with a decreased onset. (b) The most symmetric flow, A=B=C, is the second type of flow that results in a dynamo. It is, and it remains, a local maximum. (c) At larger R(M), the flow A=B≃2C/5 (and permutations) appears as the third type of flow that results in a dynamo. As R(M) is increased, it becomes the flow with the largest growth rate. The growth rates appear to have some correlation with the Lyapunov exponents, but constructive refolding of the field lines appears equally important in determining the fastest dynamo flow.

Formation of Giant Planets and Brown Dwarves

NASA Technical Reports Server (NTRS)

Lissauer, Jack J.

2003-01-01

According to the prevailing core instability model, giant planets begin their growth by the accumulation of small solid bodies, as do terrestrial planets. However, unlike terrestrial planets, the growing giant planet cores become massive enough that they are able to accumulate substantial amounts of gas before the protoplanetary disk dissipates. Models predict that rocky planets should form in orbit about most stars. It is uncertain whether or not gas giant planet formation is common, because most protoplanetary disks may dissipate before solid planetary cores can grow large enough to gravitationally trap substantial quantities of gas. Ongoing theoretical modeling of accretion of giant planet atmospheres, as well as observations of protoplanetary disks, will help decide this issue. Observations of extrasolar planets around main sequence stars can only provide a lower limit on giant planet formation frequency . This is because after giant planets form, gravitational interactions with material within the protoplanetary disk may cause them to migrat inwards and be lost to the central star. The core instability model can only produce planets greater than a few jovian masses within protoplanetary disks that are more viscous than most such disks are believed to be. Thus, few brown dwarves (objects massive enough to undergo substantial deuterium fusion, estimated to occur above approximately 13 jovian masses) are likely to be formed in this manner. Most brown dwarves, as well as an unknown number of free-floating objects of planetary mass, are probably formed as are stars, by the collapse of extended gas/dust clouds into more compact objects.

Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen-Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies.

PubMed

Yang, Xiaolu; Nian, Jinqiang; Xie, Qingjun; Feng, Jian; Zhang, Fengxia; Jing, Hongwei; Zhang, Jian; Dong, Guojun; Liang, Yan; Peng, Juli; Wang, Guodong; Qian, Qian; Zuo, Jianru

2016-11-07

Plants assimilate inorganic nitrogen absorbed from soil into organic forms as Gln and Glu through the glutamine synthetase/glutamine:2-oxoglutarate amidotransferase (GS/GOGAT) cycle. Whereas GS catalyzes the formation of Gln from Glu and ammonia, GOGAT catalyzes the transfer of an amide group from Gln to 2-oxoglutarate to produce two molecules of Glu. However, the regulatory role of the GS/GOGAT cycle in the carbon-nitrogen balance is not well understood. Here, we report the functional characterization of rice ABNORMAL CYTOKININ RESPONSE 1 (ABC1) gene that encodes a ferredoxin-dependent (Fd)-GOGAT. The weak mutant allele abc1-1 mutant shows a typical nitrogen-deficient syndrome, whereas the T-DNA insertional mutant abc1-2 is seedling lethal. Metabolomics analysis revealed the accumulation of an excessive amount of amino acids with high N/C ratio (Gln and Asn) and several intermediates in the tricarboxylic acid cycle in abc1-1, suggesting that ABC1 plays a critical role in nitrogen assimilation and carbon-nitrogen balance. Five non-synonymous single-nucleotide polymorphisms were identified in the ABC1 coding region and characterized as three distinct haplotypes, which have been highly and specifically differentiated between japonica and indica subspecies. Collectively, these results suggest that ABC1/OsFd-GOGAT is essential for plant growth and development by modulating nitrogen assimilation and the carbon-nitrogen balance. Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

Multidrug resistance in parasites: ABC transporters, P-glycoproteins and molecular modelling.

PubMed

Jones, P M; George, A M

2005-04-30

Parasitic diseases, caused by protozoa, helminths and arthropods, rank among the most important problems in human and veterinary medicine, and in agriculture, leading to debilitating sicknesses and loss of life. In the absence of vaccines and with the general failure of vector eradication programs, drugs are the main line of defence, but the newest drugs are being tracked by the emergence of resistance in parasites, sharing ominous parallels with multidrug resistance in bacterial pathogens. Any of a number of mechanisms will elicit a drug resistance phenotype in parasites, including: active efflux, reduced uptake, target modification, drug modification, drug sequestration, by-pass shunting, or substrate competition. The role of ABC transporters in parasitic multidrug resistance mechanisms is being subjected to more scrutiny, due in part to the established roles of certain ABC transporters in human diseases, and also to an increasing portfolio of ABC transporters from parasite genome sequencing projects. For example, over 100 ABC transporters have been identified in the Escherichia coli genome, but to date only about 65 in all parasitic genomes. Long established laboratory investigations are now being assisted by molecular biology, bioinformatics, and computational modelling, and it is in these areas that the role of ABC transporters in parasitic multidrug resistance mechanisms may be defined and put in perspective with that of other proteins. We discuss ABC transporters in parasites, and conclude with an example of molecular modelling that identifies a new interaction between the structural domains of a parasite P-glycoprotein.

Transcriptomic insights on the ABC transporter gene family in the salmon louse Caligus rogercresseyi.

PubMed

Valenzuela-Muñoz, Valentina; Sturm, Armin; Gallardo-Escárate, Cristian

2015-04-09

ATP-binding cassette (ABC) protein family encode for membrane proteins involved in the transport of various biomolecules through the cellular membrane. These proteins have been identified in all taxa and present important physiological functions, including the process of insecticide detoxification in arthropods. For that reason the ectoparasite Caligus rogercresseyi represents a model species for understanding the molecular underpinnings involved in insecticide drug resistance. llumina sequencing was performed using sea lice exposed to 2 and 3 ppb of deltamethrin and azamethiphos. Contigs obtained from de novo assembly were annotated by Blastx. RNA-Seq analysis was performed and validated by qPCR analysis. From the transcriptome database of C. rogercresseyi, 57 putative members of ABC protein sequences were identified and phylogenetically classified into the eight subfamilies described for ABC transporters in arthropods. Transcriptomic profiles for ABC proteins subfamilies were evaluated throughout C. rogercresseyi development. Moreover, RNA-Seq analysis was performed for adult male and female salmon lice exposed to the delousing drugs azamethiphos and deltamethrin. High transcript levels of the ABCB and ABCC subfamilies were evidenced. Furthermore, SNPs mining was carried out for the ABC proteins sequences, revealing pivotal genomic information. The present study gives a comprehensive transcriptome analysis of ABC proteins from C. rogercresseyi, providing relevant information about transporter roles during ontogeny and in relation to delousing drug responses in salmon lice. This genomic information represents a valuable tool for pest management in the Chilean salmon aquaculture industry.

Diagnostics of models and observations in the contexts of exoplanets, brown dwarfs, and very low-mass stars.

NASA Astrophysics Data System (ADS)

Kopytova, Taisiya

2016-01-01

When studying isolated brown dwarfs and directly imaged exoplanets with insignificant orbital motion,we have to rely on theoretical models to determine basic parameters such as mass, age, effective temperature, and surface gravity.While stellar and atmospheric models are rapidly evolving, we need a powerful tool to test and calibrate them.In my thesis, I focussed on comparing interior and atmospheric models with observational data, in the effort of taking into account various systematic effects that can significantly influence the data analysis.As a first step, about 460 candidate member os the Hyades were screened for companions using diffraction limited imaging observation (both our own data and archival data). As a result I could establish the single star sequence for the Hyades comprising about 250 stars (Kopytova et al. 2015, accepted to A&A). Open clusters contain many coeval objects of the same chemical composition and age, and spanning a range of masses. We compare the obtained sequence with a set of theoretical isochrones identifying systematic offsets and revealing probable issues in the models.However, there are many cases when it is impossible to test models before comparing them with observations.As a second step, we apply atmospheric models for constraining parameters of WISE 0855-07, the coolest known Y dwarf(Kopytova et al. 2014, ApJ 797, 3). We demonstrate the limits of constraining effective temperature and the presence/absence of water clouds.As a third step, we introduce a novel method to take into account the above-mentioned systematics. We construct a "systematics vector" that allows us to reveal problematic wavelength ranges when fitting atmospheric models to observed near-infrared spectraof brown dwarfs and exoplanets (Kopytova et al., in prep.). This approach plays a crucial role when retrieving abundances for these objects, in particularly, a C/O ratio. The latter parameter is an important key to formation scenarios of brown dwarf and exoplanets. We show the way to constrain a C/O ratio while eliminating systematics effects, which significantly improves the reliability of a final result and our conclusions about formation history of certain exoplanets and brown dwarfs.

HERBIG-HARO OBJECTS IN THE LUPUS I AND III MOLECULAR CLOUDS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang Hongchi; Henning, Thomas

2009-10-15

We performed a deep search for Herbig-Haro (HH) objects toward the Lupus I and III clouds, covering a sky area of {approx} 1 and {approx} 0.5 deg{sup 2}, respectively. In total, 11 new HH objects, HH 981--991, are discovered. The HH objects both in Lupus I and in Lupus III tend to be concentrated in small areas. The HH objects detected in Lupus I are located in a region of radius 0.26 pc near the young star Sz 68. The abundance of HH objects shows that this region of the cloud is active in on-going star formation. HH objects inmore » the Lup III cloud are concentrated in the central part of the cloud around the Herbig Ae/Be stars HR 5999 and 6000. HH 981 and 982 in Lupus I are probably driven by the young brown dwarf SSTc2d J154457.9-342340 which has a mass of 50 M{sub J} . HH 990 and 991 in Lup III align well with the HH 600 jet emanating from the low-mass star Par-Lup3-4, and are probably excited by this low-mass star of spectral type M5. High proper motions for HH 228 W, E, and E2 are measured, which confirms that they are excited by the young star Th 28. In contrast, HH 78 exhibits no measurable proper motion in the time span of 18 years, indicating that HH 78 is unlikely part of the HH 228 flow. The HH objects in Lup I and III are generally weak in terms of brightness and dimension in comparison to HH objects we detected with the same technique in the R CrA and Cha I clouds. Through a comparison with the survey results from the Spitzer c2d program, we find that our optical survey is more sensitive, in terms of detection rate, than the Spitzer IRAC survey to high-velocity outflows in the Lup I and III clouds.« less

Applying activity-based costing to healthcare settings.

PubMed

Canby, J B

1995-02-01

Activity-based costing (ABC) focuses on processes that drive cost. By tracing healthcare activities back to events that generate cost, a more accurate measurement of financial performance is possible. This article uses ABC principles and techniques to determine costs associated with the x-ray process in a midsized outpatient clinic. The article also provides several tips for initiating an ABC cost system for an entire healthcare organization.

A MULTIPLE TESTING OF THE ABC METHOD AND THE DEVELOPMENT OF A SECOND-GENERATION MODEL. PART II, TEST RESULTS AND AN ANALYSIS OF RECALL RATIO.

ERIC Educational Resources Information Center

ALTMANN, BERTHOLD

AFTER A BRIEF SUMMARY OF THE TEST PROGRAM (DESCRIBED MORE FULLY IN LI 000 318), THE STATISTICAL RESULTS TABULATED AS OVERALL "ABC (APPROACH BY CONCEPT)-RELEVANCE RATIOS" AND "ABC-RECALL FIGURES" ARE PRESENTED AND REVIEWED. AN ABSTRACT MODEL DEVELOPED IN ACCORDANCE WITH MAX WEBER'S "IDEALTYPUS" ("DIE OBJEKTIVITAET…

75 FR 11749 - Fisheries of the Exclusive Economic Zone Off Alaska; Gulf of Alaska; Final 2010 and 2011 Harvest...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-12

... TACs for 2010 and 2011 that are equal to ABCs for pollock, deep-water flatfish, rex sole, sablefish... recommended TACs for 2010 and 2011 that are less than the ABCs for Pacific cod, flathead sole, shallow-water... that the sum of all State and Federal water Pacific cod removals from the GOA not exceed ABC...

Alternative Basic Comprehensive Program (Project A.B.C.) Special Alternative Instructional Program. Final Evaluation Report 1992-93. OREA Report.

ERIC Educational Resources Information Center

Augustin, Marc A.

The Alternative Basic Comprehension Program (Project A.B.C.) for bilingual high school students was a special alternative instructional program funded by Title VII for the third year at two high schools in the Bronx. In the year under review, Project A.B.C. served 260 students of limited English proficiency (LEP). Participating students received…

JPRS Report, West Europe, Reference Aid, Glossary of Acronyms and Abbreviations of Norway

DTIC Science & Technology

1989-04-04

nuclear-biological- chemical [use NBC] ABC/S Forsvarets ABC-sekretariat Defense NBC Secretariat adj . adjutant adm administrasj on adm...institusj onens regneanlegg kjem kjemi(sk) kj. st. kj^restilling Kjeller Institute Computing Facility chemical driving position kjt kj...National Federation of the Chemical Mineral Industry Air Commander, North Norway LKR lett kontrollrom LKS Luftkommandor S0r-Norge LK-sjef

Artificial Boundary Conditions Based on the Difference Potentials Method

NASA Technical Reports Server (NTRS)

Tsynkov, Semyon V.

1996-01-01

While numerically solving a problem initially formulated on an unbounded domain, one typically truncates this domain, which necessitates setting the artificial boundary conditions (ABC's) at the newly formed external boundary. The issue of setting the ABC's appears to be most significant in many areas of scientific computing, for example, in problems originating from acoustics, electrodynamics, solid mechanics, and fluid dynamics. In particular, in computational fluid dynamics (where external problems present a wide class of practically important formulations) the proper treatment of external boundaries may have a profound impact on the overall quality and performance of numerical algorithms. Most of the currently used techniques for setting the ABC's can basically be classified into two groups. The methods from the first group (global ABC's) usually provide high accuracy and robustness of the numerical procedure but often appear to be fairly cumbersome and (computationally) expensive. The methods from the second group (local ABC's) are, as a rule, algorithmically simple, numerically cheap, and geometrically universal; however, they usually lack accuracy of computations. In this paper we first present a survey and provide a comparative assessment of different existing methods for constructing the ABC's. Then, we describe a relatively new ABC's technique of ours and review the corresponding results. This new technique, in our opinion, is currently one of the most promising in the field. It enables one to construct such ABC's that combine the advantages relevant to the two aforementioned classes of existing methods. Our approach is based on application of the difference potentials method attributable to V. S. Ryaben'kii. This approach allows us to obtain highly accurate ABC's in the form of certain (nonlocal) boundary operator equations. The operators involved are analogous to the pseudodifferential boundary projections first introduced by A. P. Calderon and then also studied by R. T. Seeley. The apparatus of the boundary pseudodifferential equations, which has formerly been used mostly in the qualitative theory of integral equations and PDE'S, is now effectively employed for developing numerical methods in the different fields of scientific computing.

Oncogenically active MYD88 mutations in human lymphoma.

PubMed

Ngo, Vu N; Young, Ryan M; Schmitz, Roland; Jhavar, Sameer; Xiao, Wenming; Lim, Kian-Huat; Kohlhammer, Holger; Xu, Weihong; Yang, Yandan; Zhao, Hong; Shaffer, Arthur L; Romesser, Paul; Wright, George; Powell, John; Rosenwald, Andreas; Muller-Hermelink, Hans Konrad; Ott, German; Gascoyne, Randy D; Connors, Joseph M; Rimsza, Lisa M; Campo, Elias; Jaffe, Elaine S; Delabie, Jan; Smeland, Erlend B; Fisher, Richard I; Braziel, Rita M; Tubbs, Raymond R; Cook, J R; Weisenburger, Denny D; Chan, Wing C; Staudt, Louis M

2011-02-03

The activated B-cell-like (ABC) subtype of diffuse large B-cell lymphoma (DLBCL) remains the least curable form of this malignancy despite recent advances in therapy. Constitutive nuclear factor (NF)-κB and JAK kinase signalling promotes malignant cell survival in these lymphomas, but the genetic basis for this signalling is incompletely understood. Here we describe the dependence of ABC DLBCLs on MYD88, an adaptor protein that mediates toll and interleukin (IL)-1 receptor signalling, and the discovery of highly recurrent oncogenic mutations affecting MYD88 in ABC DLBCL tumours. RNA interference screening revealed that MYD88 and the associated kinases IRAK1 and IRAK4 are essential for ABC DLBCL survival. High-throughput RNA resequencing uncovered MYD88 mutations in ABC DLBCL lines. Notably, 29% of ABC DLBCL tumours harboured the same amino acid substitution, L265P, in the MYD88 Toll/IL-1 receptor (TIR) domain at an evolutionarily invariant residue in its hydrophobic core. This mutation was rare or absent in other DLBCL subtypes and Burkitt's lymphoma, but was observed in 9% of mucosa-associated lymphoid tissue lymphomas. At a lower frequency, additional mutations were observed in the MYD88 TIR domain, occurring in both the ABC and germinal centre B-cell-like (GCB) DLBCL subtypes. Survival of ABC DLBCL cells bearing the L265P mutation was sustained by the mutant but not the wild-type MYD88 isoform, demonstrating that L265P is a gain-of-function driver mutation. The L265P mutant promoted cell survival by spontaneously assembling a protein complex containing IRAK1 and IRAK4, leading to IRAK4 kinase activity, IRAK1 phosphorylation, NF-κB signalling, JAK kinase activation of STAT3, and secretion of IL-6, IL-10 and interferon-β. Hence, the MYD88 signalling pathway is integral to the pathogenesis of ABC DLBCL, supporting the development of inhibitors of IRAK4 kinase and other components of this pathway for the treatment of tumours bearing oncogenic MYD88 mutations.

ABC transporter activity linked to radiation resistance and molecular subtype in pediatric medulloblastoma

PubMed Central

2013-01-01

Background Resistance to radiation treatment remains a major clinical problem for patients with brain cancer. Medulloblastoma is the most common malignant brain tumor of childhood, and occurs in the cerebellum. Though radiation treatment has been critical in increasing survival rates in recent decades, the presence of resistant cells in a substantial number of medulloblastoma patients leads to relapse and death. Methods Using the established medulloblastoma cell lines UW228 and Daoy, we developed a novel model system to enrich for and study radiation tolerant cells early after radiation exposure. Using fluorescence-activated cell sorting, dead cells and cells that had initiated apoptosis were removed, allowing surviving cells to be investigated before extensive proliferation took place. Results Isolated surviving cells were tumorigenic in vivo and displayed elevated levels of ABCG2, an ABC transporter linked to stem cell behavior and drug resistance. Further investigation showed another family member, ABCA1, was also elevated in surviving cells in these lines, as well as in early passage cultures from pediatric medulloblastoma patients. We discovered that the multi-ABC transporter inhibitors verapamil and reserpine sensitized cells from particular patients to radiation, suggesting that ABC transporters have a functional role in cellular radiation protection. Additionally, verapamil had an intrinsic anti-proliferative effect, with transient exposure in vitro slowing subsequent in vivo tumor formation. When expression of key ABC transporter genes was assessed in medulloblastoma tissue from 34 patients, levels were frequently elevated compared with normal cerebellum. Analysis of microarray data from independent cohorts (n = 428 patients) showed expression of a number of ABC transporters to be strongly correlated with certain medulloblastoma subtypes, which in turn are associated with clinical outcome. Conclusions ABC transporter inhibitors are already being trialed clinically, with the aim of decreasing chemotherapy resistance. Our findings suggest that the inhibition of ABC transporters could also increase the efficacy of radiation treatment for medulloblastoma patients. Additionally, the finding that certain family members are associated with particular molecular subtypes (most notably high ABCA8 and ABCB4 expression in Sonic Hedgehog pathway driven tumors), along with cell membrane location, suggests ABC transporters are worthy of consideration for the diagnostic classification of medulloblastoma. PMID:24219920

IMG-ABC. A knowledge base to fuel discovery of biosynthetic gene clusters and novel secondary metabolites

DOE PAGES

Hadjithomas, Michalis; Chen, I-Min Amy; Chu, Ken; ...

2015-07-14

In the discovery of secondary metabolites, analysis of sequence data is a promising exploration path that remains largely underutilized due to the lack of computational platforms that enable such a systematic approach on a large scale. In this work, we present IMG-ABC (https://img.jgi.doe.gov/abc), an atlas of biosynthetic gene clusters within the Integrated Microbial Genomes (IMG) system, which is aimed at harnessing the power of “big” genomic data for discovering small molecules. IMG-ABC relies on IMG’s comprehensive integrated structural and functional genomic data for the analysis of biosynthetic gene clusters (BCs) and associated secondary metabolites (SMs). SMs and BCs serve asmore » the two main classes of objects in IMG-ABC, each with a rich collection of attributes. A unique feature of IMG-ABC is the incorporation of both experimentally validated and computationally predicted BCs in genomes as well as metagenomes, thus identifying BCs in uncultured populations and rare taxa. We demonstrate the strength of IMG-ABC’s focused integrated analysis tools in enabling the exploration of microbial secondary metabolism on a global scale, through the discovery of phenazine-producing clusters for the first time in lphaproteobacteria. IMG-ABC strives to fill the long-existent void of resources for computational exploration of the secondary metabolism universe; its underlying scalable framework enables traversal of uncovered phylogenetic and chemical structure space, serving as a doorway to a new era in the discovery of novel molecules. IMG-ABC is the largest publicly available database of predicted and experimental biosynthetic gene clusters and the secondary metabolites they produce. The system also includes powerful search and analysis tools that are integrated with IMG’s extensive genomic/metagenomic data and analysis tool kits. As new research on biosynthetic gene clusters and secondary metabolites is published and more genomes are sequenced, IMG-ABC will continue to expand, with the goal of becoming an essential component of any bioinformatic exploration of the secondary metabolism world.« less

The Asfora Bullet Cage System Shows Comparable Fusion Rate Success Versus Control Cage in Posterior Lumbar Interbody Fusion in a Randomized Clinical Trial.

PubMed

Morgan, Jeremy P; Miller, Ashley L; Thompson, Paul A; Asfora, Wilson T

2016-04-01

Low back pain and degeneration of the intervertebral disc are an integrated malady that affects millions of Americans. Cage devices used in association with posterior lumbar interbody fusion (PLIF) have been shown to be an effective approach in the treatment of a number of lower spine disorders attributed to degenerative disc disease (DDD). This study was undertaken as part of a U.S. Food and Drug Administration (FDA) Investigational Device Exemption (IDE) study and compares the effectiveness of the Asfora Bullet Cage System (ABCS) to successfully fuse vertebra at one or two levels between L2 and S1 in patients with DDD to an FDA approved comparison device, the Medtronic-Sofamor Danek Inter Fix Threaded Fusion Device (MSDIFD). A total of 257 randomized participants were implanted with either the ABCS device (n = 132) or the MSDIFD device (n = 125) through an open posterior approach using autogenous local bone graft without the use of pedicle screws. Patients were evaluated prior to surgery and at the 24 month (24-M) visit for fusion status, deep tendon reflex status, sensory function, motor function, straight leg raise status, pain, disability, and device safety. Radiological evaluation and statistical analysis were performed by independent professionals. Evaluation of device success was performed at 24-M visit. From the original group of 257 patients, 59 were lost to follow-up. Primary measures of success at the 24-M visit involved pain and function, fusion, neurological status, and device-related adverse events measures. Pain and function improved in both (MSDIFD: 75.7 percent; ABCS: 82.6 percent). Fusion success with all radiographic points at 24-M visits was 79.4 percent MSDIFD and 88.2 percent ABCS. Neurological improvement was seen in both (MSDIFD: 77.0 percent; ABCS: 87.8 percent). One device-related grade 1 adverse event was reported in the MSDIFD group. Disc height preservation was equivalent for single level fusions (MSDIFD: 16.1 percent; ABCS: 20.0 percent) and second level fusions (MSDIFD: 10.7 percent; ABCS: 14.3 percent). General health and well-being improvement was the same (MSDIFD: 37.0 percent; ABCS: 40.0 percent). Subsequent fusion, up to 10 years, was equivalent (MSDIFD: 83.8 percent; ABCS: 91.2). Results for both devices were considered to be satisfactory, with a slight non-significant superiority for the ABCS. From the ABCS device FDA IDE sanctioned study and the review of the literature, we concluded that the Asfora Bullet Cage System is safe, effective and comparable to other interbody fusion devices which are used stand-alone or in conjunction with pedicle screws, rhBMP-2, or autogenous bone harvested from the iliac crest inserted through anterior, lateral or posterior approaches.

Characterizing the Cloud Decks of Luhman 16AB with Medium-resolution Spectroscopic Monitoring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kellogg, Kendra; Metchev, Stanimir; Heinze, Aren

2017-11-01

We present results from a two-night R ∼ 4000 0.9–2.5 μ m spectroscopic monitoring campaign of Luhman 16AB (L7.5 + T0.5). We assess the variability amplitude as a function of pressure level in the atmosphere of Luhman 16B: the more variable of the two components. The amplitude decreases monotonically with decreasing pressure, indicating that the source of variability—most likely patchy clouds—lies in the lower atmosphere. An unexpected result is that the strength of the K i absorption is higher in the faint state of Luhman 16B and lower in the bright state. We conclude that either the abundance of Kmore » i increases when the clouds roll in, potentially because of additional K i in the cloud itself, or that the temperature–pressure profile changes. We reproduce the change in K i absorption strengths with combinations of spectral templates to represent the bright and the faint variability states. These are dominated by a warmer L8 or L9 component, with a smaller contribution from a cooler T1 or T2 component. The success of this approach argues that the mechanism responsible for brown dwarf variability is also behind the diverse spectral morphology across the L-to-T transition. We further suggest that the L9–T1 part of the sequence represents a narrow but random ordering of effective temperatures and cloud fractions, obscured by the monotonic progression in methane absorption strength.« less

Bfr1p is responsible for tributyltin resistance in Schizosaccharomyces pombe.

PubMed

Akiyama, Koichi; Iwaki, Tomoko; Sugimoto, Naoko; Chardwiriyapreecha, Soracom; Kawano, Miyuki; Nishimoto, Sogo; Sugahara, Takuya; Sekito, Takayuki; Kakinuma, Yoshimi

2011-01-01

ATP-binding cassette (ABC) transporter plays an important role for resistance against xenobiotics. There are eleven ABC transporter genes in the genome of fission yeast Schizosaccharomyces pombe. We examined the role of ABC transporter against the toxicity of tributyltin chloride (TBT), a widespread environmental pollutant, in cell growth. Among individual ABC transporter mutants, the growth of a mutant deficient in Bfr1p, a plasma membrane-embedded transporter, was extremely sensitive to TBT. The lethal TBT concentration inducing 50% of cell death (LC(50)) was 25 µM for the parent strain and 10.2 µM for the bfr1∆ mutant. Thus, Bfr1p was responsible for TBT resistance in S. pombe.

Diversity in ABC transporters: Type I, II and III importers

PubMed Central

Rice, Austin J.; Park, Aekyung

2014-01-01

ATP-binding cassette transporters are multi-subunit membrane pumps that transport substrates across membranes. While significant in the transport process, transporter architecture exhibits a range of diversity that we are only beginning to recognize. This divergence may provide insight into the mechanisms of substrate transport and homeostasis. Until recently, ABC importers have been classified into two types, but with the emergence of energy-coupling factor (ECF) transporters there are potentially three types of ABC importers. In this review, we summarize an expansive body of research on the three types of importers with an emphasis on the basics that underlie ABC importers, such as structure, subunit composition and mechanism. PMID:25155087

Anger and the ABC model underlying Rational-Emotive Behavior Therapy.

PubMed

Ziegler, Daniel J; Smith, Phillip N

2004-06-01

The ABC model underlying Ellis's Rational-Emotive Behavior Therapy predicts that people who think more irrationally should display greater trait anger than do people who think less irrationally. This study tested this prediction regarding the ABC model. 186 college students were administered the Survey of Personal Beliefs and the State-Trait Anger Expression Inventory-Second Edition to measure irrational thinking and trait anger, respectively. Students who scored higher on Overall Irrational Thinking and Low Frustration Tolerance scored significantly higher on Trait Anger than did those who scored lower on Overall Irrational Thinking and Low Frustration Tolerance. This indicates support for the ABC model, especially Ellis's construct of irrational beliefs which is central to the model.

Protein complexes formed during the incision reaction catalyzed by the Escherichia coli UvrABC endonuclease.

PubMed Central

Yeung, A T; Mattes, W B; Grossman, L

1986-01-01

An examination has been made into the nature of the nucleoprotein complexes formed during the incision reaction catalyzed by the Escherichia coli UvrABC endonuclease when acting on a pyrimidine dimer-containing fd RF-I DNA species. The complexes of proteins and DNA form in unique stages. The first stage of binding involves an ATP-stimulated interaction of the UvrA protein with duplex DNA containing pyrimidine dimer sites. The UvrB protein significantly stabilizes the UvrA-pyrimidine dimer containing DNA complex which, in turn, provides a foundation for the binding of UvrC to activate the UvrABC endonuclease. The binding of one molecule of UvrC to each UvrAB-damaged DNA complex is needed to catalyze incision in the vicinity of pyrimidine dimer sites. The UvrABC-DNA complex persists after the incision event suggesting that the lack of UvrABC turnover may be linked to other activities in the excision-repair pathway beyond the initial incision reaction. PMID:3960727

Classification of E-Nose Aroma Data of Four Fruit Types by ABC-Based Neural Network

PubMed Central

Adak, M. Fatih; Yumusak, Nejat

2016-01-01

Electronic nose technology is used in many areas, and frequently in the beverage industry for classification and quality-control purposes. In this study, four different aroma data (strawberry, lemon, cherry, and melon) were obtained using a MOSES II electronic nose for the purpose of fruit classification. To improve the performance of the classification, the training phase of the neural network with two hidden layers was optimized using artificial bee colony algorithm (ABC), which is known to be successful in exploration. Test data were given to two different neural networks, each of which were trained separately with backpropagation (BP) and ABC, and average test performances were measured as 60% for the artificial neural network trained with BP and 76.39% for the artificial neural network trained with ABC. Training and test phases were repeated 30 times to obtain these average performance measurements. This level of performance shows that the artificial neural network trained with ABC is successful in classifying aroma data. PMID:26927124

Efficient extracellular production of type I secretion pathway-dependent Pseudomonas fluorescens lipase in recombinant Escherichia coli by heterologous ABC protein exporters.

PubMed

Eom, Gyeong Tae; Lee, Seung Hwan; Oh, Young Hoon; Choi, Ji Eun; Park, Si Jae; Song, Jae Kwang

2014-10-01

Heterologous ABC protein exporters, the apparatus of type I secretion pathway in Gram-negative bacteria, were used for extracellular production of Pseudomonas fluorescens lipase (TliA) in recombinant Escherichia coli. The effect of the expression of different ABC protein exporter gene clusters (P. fluorescens tliDEF, Pseudomonas aeruginosa aprDEF, Erwinia chrysanthemi prtDEF, and Serratia marcescens lipBCD genes) was examined on the secretion of TliA at growth temperatures of 20, 25, 30 and 35 °C. TliA secretion in recombinant E. coli XL10-Gold varied depending upon type of ABC protein exporter and culture temperature. E. coli expressing S. marcescens lipBCD genes showed the highest secretion level of TliA (122.8 U ml(-1)) when cultured at 25 °C. Thus, optimized culture conditions for efficient extracellular production of lipase in recombinant E. coli can be designed by changing the type of ABC protein exporter and the growth temperature.

Classification of E-Nose Aroma Data of Four Fruit Types by ABC-Based Neural Network.

PubMed

Adak, M Fatih; Yumusak, Nejat

2016-02-27

Electronic nose technology is used in many areas, and frequently in the beverage industry for classification and quality-control purposes. In this study, four different aroma data (strawberry, lemon, cherry, and melon) were obtained using a MOSES II electronic nose for the purpose of fruit classification. To improve the performance of the classification, the training phase of the neural network with two hidden layers was optimized using artificial bee colony algorithm (ABC), which is known to be successful in exploration. Test data were given to two different neural networks, each of which were trained separately with backpropagation (BP) and ABC, and average test performances were measured as 60% for the artificial neural network trained with BP and 76.39% for the artificial neural network trained with ABC. Training and test phases were repeated 30 times to obtain these average performance measurements. This level of performance shows that the artificial neural network trained with ABC is successful in classifying aroma data.

50 CFR Table 1a to Part 660... - 2013, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in metric tons)

Code of Federal Regulations, 2013 CFR

2013-10-01

... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false 2013, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in metric tons) 1a Table 1a to Part 660, Subpart C... Part 660, Subpart C—2013, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights...

50 CFR Table 1a to Part 660... - 2013, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in metric tons)

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false 2013, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in metric tons) 1a Table 1a to Part 660, Subpart C... Part 660, Subpart C—2013, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights...

Structural Validity of the Movement ABC-2 Test: Factor Structure Comparisons across Three Age Groups

ERIC Educational Resources Information Center

Schulz, Joerg; Henderson, Sheila E.; Sugden, David A.; Barnett, Anna L.

2011-01-01

Background: The Movement ABC test is one of the most widely used assessments in the field of Developmental Coordination Disorder (DCD). Improvements to the 2nd edition of the test (M-ABC-2) include an extension of the age range and reduction in the number of age bands as well as revision of tasks. The total test score provides a measure of motor…

The ABCs of School Choice: The Comprehensive Guide to Every Private School Choice Program in America. 2016 Edition

ERIC Educational Resources Information Center

Friedman Foundation for Educational Choice, 2016

2016-01-01

"The ABCs of School Choice" is a comprehensive, data-rich guide to every private school choice program in America. The 2016 edition of "The ABCs of School Choice" is the best yet, not just because of the new look and the fantastic growth in the number of school choice programs, but also because it is now paired with a…

[German adaptation of the "Activities-Specific Balance Confidence (ABC) scale" for the assessment of falls-related self-efficacy].

PubMed

Schott, Nadja

2008-12-01

The present study investigates the psychometric properties and the factorial structure of the German adaptation of the Activities-Specific Balance Confidence (ABC) scale (Powell & Myers, 1995) for the evaluation of falls-related self-efficacy in community-dwelling older adults. The German adaptation of the ABC using a forward-backward procedure was administered to 113 older adults (age 68.9+/-8.5 years). The following internationally accepted instruments were used for validation: The Short Form Health Survey SF 36, the Geriatric Depression Scale (GDS), the Trail Making Test and the Letter Number Sequencing Test, and motor tests (balance, strength, mobility). The internal consistency (0.91-0.95) as well as the test-retest reliability of the subscales was excellent (0.94-0.98). The correlation coefficients with the validation instruments ranged between 0.33 and 0.58. Significant differences in the ABC-D scores were found in older adults with and without falls. Older adults with a recent fall history scored lower on the ABC-D than older adults without a recent fall history. To conclude, the German version of the ABC has properties analogous to the original English version and is apparently useful in assessing falls-related self-efficacy.

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

PubMed Central

Cornuet, Jean-Marie; Santos, Filipe; Beaumont, Mark A.; Robert, Christian P.; Marin, Jean-Michel; Balding, David J.; Guillemaud, Thomas; Estoup, Arnaud

2008-01-01

Summary: Genetic data obtained on population samples convey information about their evolutionary history. Inference methods can extract part of this information but they require sophisticated statistical techniques that have been made available to the biologist community (through computer programs) only for simple and standard situations typically involving a small number of samples. We propose here a computer program (DIY ABC) for inference based on approximate Bayesian computation (ABC), in which scenarios can be customized by the user to fit many complex situations involving any number of populations and samples. Such scenarios involve any combination of population divergences, admixtures and population size changes. DIY ABC can be used to compare competing scenarios, estimate parameters for one or more scenarios and compute bias and precision measures for a given scenario and known values of parameters (the current version applies to unlinked microsatellite data). This article describes key methods used in the program and provides its main features. The analysis of one simulated and one real dataset, both with complex evolutionary scenarios, illustrates the main possibilities of DIY ABC. Availability: The software DIY ABC is freely available at http://www.montpellier.inra.fr/CBGP/diyabc. Contact: j.cornuet@imperial.ac.uk Supplementary information: Supplementary data are also available at http://www.montpellier.inra.fr/CBGP/diyabc PMID:18842597

Accelerating Approximate Bayesian Computation with Quantile Regression: application to cosmological redshift distributions

NASA Astrophysics Data System (ADS)

Kacprzak, T.; Herbel, J.; Amara, A.; Réfrégier, A.

2018-02-01

Approximate Bayesian Computation (ABC) is a method to obtain a posterior distribution without a likelihood function, using simulations and a set of distance metrics. For that reason, it has recently been gaining popularity as an analysis tool in cosmology and astrophysics. Its drawback, however, is a slow convergence rate. We propose a novel method, which we call qABC, to accelerate ABC with Quantile Regression. In this method, we create a model of quantiles of distance measure as a function of input parameters. This model is trained on a small number of simulations and estimates which regions of the prior space are likely to be accepted into the posterior. Other regions are then immediately rejected. This procedure is then repeated as more simulations are available. We apply it to the practical problem of estimation of redshift distribution of cosmological samples, using forward modelling developed in previous work. The qABC method converges to nearly same posterior as the basic ABC. It uses, however, only 20% of the number of simulations compared to basic ABC, achieving a fivefold gain in execution time for our problem. For other problems the acceleration rate may vary; it depends on how close the prior is to the final posterior. We discuss possible improvements and extensions to this method.

Expression, purification and thermostability of MBP-chondroitinase ABC I from Proteus vulgaris.

PubMed

Chen, Zhenya; Li, Ye; Yuan, Qipeng

2015-01-01

Chondroitinase ABC I (ChSase ABC I) which can degrade chondroitin sulfate (CS) and other glycosaminoglycan to oligosaccharide or unsaturated disaccharide, was fusionally expressed with maltose-binding protein (MBP) in Escherichia coli BL21(DE3) (E. coli BL21(DE3)) and purified for the first time in this study. The result showed that the productivity of recombinant MBP-ChSase ABC I was 3180 IU/(L fermentation liquor) with CS A as substrate, and the productivity might be the highest level when compared to the reported ones. The specific activity of recombinant MBP-ChSase ABC I was 76 IU/(mg protein) after purification. The Vmax, Km and kcat were 18.7 ± 0.3 μmol/Ls, 73.1 ± 4.1 μmol/L and 586.7 ± 10.8 s(-1), respectively. Enzyme activity of the purified enzyme remained about 78% after 210 min when the enzyme incubated at 30 °C. This study introduces a rapid method for highly expressing ChSase ABC I, and the method could be adopted in the process of industrial production. Furthermore the investigation of thermostability might lead to an important guide in clinical treatment. Copyright © 2014 Elsevier B.V. All rights reserved.

Comparison between the Movement ABC-2 and the Zurich Neuromotor Assessment in Preschool Children.

PubMed

Kakebeeke, Tanja H; Knaier, Elisa; Köchli, Sabrina; Chaouch, Aziz; Rousson, Valentin; Kriemler, Susi; Jenni, Oskar G

2016-12-01

An established test instrument for the assessment of motor performance in children between 3 and 16 years is the Movement Assessment Battery for Children - Second Edition (M-ABC-2). The Zurich Neuromotor Assessment (ZNA) is also widely used for the evaluation of children's motor performance but has not been compared with the M-ABC-2 for children below five years for the purpose of convergent validity. Forty-seven children (26 boys, 21 girls) between three and five years of age were assessed using the M-ABC-2 and the ZNA3-5. Rank correlations between scores of different test components were calculated. Only low-to-moderate correlations were observed when separate components of these tests were compared (.31 to .68, p < .05), especially when involving the associated movements from the ZNA3-5 (-.05 to -.13, p > .05). However, the correlation between summary scores of the two tests was .77 (p < .001), and it increased to .84 when associated movements were excluded, which was comparable in magnitude to the test-retest reliability of the M-ABC-2, supporting convergent validity between the two tests. Although the ZNA3-5 and M-ABC-2 measure different aspects of motor behavior, the two instruments may thus measure essentially the same construct. © The Author(s) 2016.

Use of novel chitosan hydrogels for chemical tissue bonding of autologous chondral transplants.

PubMed

Gittens, Jamila; Haleem, Amgad M; Grenier, Stephanie; Smyth, Niall A; Hannon, Charles P; Ross, Keir A; Torzilli, Peter A; Kennedy, John G

2016-07-01

The objective of this study was to evaluate the effect of chemical tissue bonding (CTB) on adhesion strength, fluid permeability, and cell viability across a cartilaginous graft-host interface in an in vitro autologous chondral transplant (ACT) model. Chitosan-based cross-linkers; Chitosan-Rose Bengal [Chi-RB (Ch-ABC)], Chitosan-Genipin [Chi-GP (Ch-ABC)], and Chitosan-Rose Bengal-Genipin [Chi-RB-GP (Ch-ABC)] were applied to bovine immature cartilage explants after pre-treatment with surface degrading enzyme, Chondroitinase-ABC (Ch-ABC). Adhesion strength, fluid permeability and cell viability were assessed via mechanical push-out shear testing, fluid transport and live/dead cell staining, respectively. All three chitosan-based cross-linkers significantly increased the adhesion strength at the graft-host interface, however, only a statistically significant decrease in fluid permeability was noted in Chi-GP (Ch-ABC) specimen compared to untreated controls. Cell viability was maintained for 7 days of culture across all three treatment groups. These results show the potential clinical relevance of novel chitosan-based hydrogels in enhancing tissue integration and reducing synovial fluid penetration after ACT procedures in diarthoidal joints such as the knee and ankle. © 2015 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res 34:1139-1146, 2016. © 2015 Orthopaedic Research Society. Published by Wiley Periodicals, Inc.

ABC Transporters Involved in Export of Cell Surface Glycoconjugates

PubMed Central

Cuthbertson, Leslie; Kos, Veronica; Whitfield, Chris

2010-01-01

Summary: Complex glycoconjugates play critical roles in the biology of microorganisms. Despite the remarkable diversity in glycan structures and the bacteria that produce them, conserved themes are evident in the biosynthesis-export pathways. One of the primary pathways involves representatives of the ATP-binding cassette (ABC) transporter superfamily. These proteins are responsible for the export of a wide variety of cell surface oligo- and polysaccharides in both Gram-positive and Gram-negative bacteria. Recent investigations of the structure and function of ABC transporters involved in the export of lipopolysaccharide O antigens have revealed two fundamentally different strategies for coupling glycan polymerization to export. These mechanisms are distinguished by the presence (or absence) of characteristic nonreducing terminal modifications on the export substrates, which serve as chain termination and/or export signals, and by the presence (or absence) of a discrete substrate-binding domain in the nucleotide-binding domain polypeptide of the ABC transporter. A bioinformatic survey examining ABC exporters from known oligo- and polysaccharide biosynthesis loci identifies conserved nucleotide-binding domain protein families that correlate well with themes in the structures and assembly of glycans. The familial relationships among the ABC exporters generate hypotheses concerning the biosynthesis of structurally diverse oligo- and polysaccharides, which play important roles in the biology of bacteria with different lifestyles. PMID:20805402

Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology.

PubMed

Poon, Art F Y

2015-09-01

The shapes of phylogenetic trees relating virus populations are determined by the adaptation of viruses within each host, and by the transmission of viruses among hosts. Phylodynamic inference attempts to reverse this flow of information, estimating parameters of these processes from the shape of a virus phylogeny reconstructed from a sample of genetic sequences from the epidemic. A key challenge to phylodynamic inference is quantifying the similarity between two trees in an efficient and comprehensive way. In this study, I demonstrate that a new distance measure, based on a subset tree kernel function from computational linguistics, confers a significant improvement over previous measures of tree shape for classifying trees generated under different epidemiological scenarios. Next, I incorporate this kernel-based distance measure into an approximate Bayesian computation (ABC) framework for phylodynamic inference. ABC bypasses the need for an analytical solution of model likelihood, as it only requires the ability to simulate data from the model. I validate this "kernel-ABC" method for phylodynamic inference by estimating parameters from data simulated under a simple epidemiological model. Results indicate that kernel-ABC attained greater accuracy for parameters associated with virus transmission than leading software on the same data sets. Finally, I apply the kernel-ABC framework to study a recent outbreak of a recombinant HIV subtype in China. Kernel-ABC provides a versatile framework for phylodynamic inference because it can fit a broader range of models than methods that rely on the computation of exact likelihoods. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Early Observations of the Type Ia Supernova iPTF 16abc

NASA Astrophysics Data System (ADS)

Miller, Adam; iPTF Collaboration

2018-01-01

Early observations of Type Ia supernovae (SNe) provide a unique probe of their progenitor systems and explosion physics. Here, we report the intermediate Palomar Transient Factory (iPTF) discovery of an extraordinarily young SN Ia, iPTF 16abc. By fitting a power law to our early light curve, we infer that first light for the SN only occurred 0.15 +0.15-0.07 d before our first detection. In the ~24 hr after discovery, iPTF 16abc rose by ~2 mag, following a near-linear rise in flux for ~3 d. Strong C II absorption is detected in the early spectra of iPTF 16abc, before disappearing after ~7 d. Unlike the extensively-observed Type Ia SN 2011fe, the (B-V)_0 colors of iPTF 16abc are blue and nearly constant in the days after explosion. We show that our early observations of iPTF 16abc cannot be explained by either SN shock breakout and the associated, subsequent cooling, or the SN ejecta colliding with a stellar companion. Instead, we argue that the early characteristics of iPTF 16abc, including: (i) the rapid, near-linear rise, (ii) the non-evolving blue colors, and (iii) the strong absorption from ionized carbon, are the result of either vigorous mixing of radioactive-Ni in the SN ejecta, or ejecta interaction with diffuse material, or a combination of the two. In the next few years, dozens of very young normal SNe Ia will be discovered, and observations similar to those presented here will constrain the white dwarf explosion mechanism.

Bone cysts: unicameral and aneurysmal bone cyst.

PubMed

Mascard, E; Gomez-Brouchet, A; Lambot, K

2015-02-01

Simple and aneurysmal bone cysts are benign lytic bone lesions, usually encountered in children and adolescents. Simple bone cyst is a cystic, fluid-filled lesion, which may be unicameral (UBC) or partially separated. UBC can involve all bones, but usually the long bone metaphysis and otherwise primarily the proximal humerus and proximal femur. The classic aneurysmal bone cyst (ABC) is an expansive and hemorrhagic tumor, usually showing characteristic translocation. About 30% of ABCs are secondary, without translocation; they occur in reaction to another, usually benign, bone lesion. ABCs are metaphyseal, excentric, bulging, fluid-filled and multicameral, and may develop in all bones of the skeleton. On MRI, the fluid level is evocative. It is mandatory to distinguish ABC from UBC, as prognosis and treatment are different. UBCs resolve spontaneously between adolescence and adulthood; the main concern is the risk of pathologic fracture. Treatment in non-threatening forms consists in intracystic injection of methylprednisolone. When there is a risk of fracture, especially of the femoral neck, surgery with curettage, filling with bone substitute or graft and osteosynthesis may be required. ABCs are potentially more aggressive, with a risk of bone destruction. Diagnosis must systematically be confirmed by biopsy, identifying soft-tissue parts, as telangiectatic sarcoma can mimic ABC. Intra-lesional sclerotherapy with alcohol is an effective treatment. In spinal ABC and in aggressive lesions with a risk of fracture, surgical treatment should be preferred, possibly after preoperative embolization. The risk of malignant transformation is very low, except in case of radiation therapy. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

Sonothrombolysis is effective with recombinant tissue-type plasminogen activator, but not with Abciximab. Results from an in vitro study with whole blood clots and platelet-rich clots.

PubMed

Eggers, Jürgen; Ossadnik, Stefan; Hütten, Heiko; Seidel, Günter

2009-12-01

Transcranial "diagnostic" ultrasound (US) has been shown to accelerate thrombolysis related to recombinant tissue-type plasminogen activator (rt-PA). In this in vitro study, we evaluated the potential of US to increase clot dissolution mediated by Abciximab (Abc) compared to rt-PA. The effect of 1.8-MHz pulsed wave (PW) Doppler US on dissolution of whole venous blood clots (WBC) and platelet-rich clots (PRC) treated with Abc and rt-PA was investigated in an in vitro model. Clot dissolution was measured by weight loss. Abc-related WBC dissolution was enhanced by additional US, but the effect was not any more detectable when the US was attenuated by a human temporal bone (US-tb). In PRC there was no additional effect of US on the Abc-related clot lysis. Rt-PA-related clot dissolution was increased by US in WBC and PRC as well, however, US-tb was only effective in WBC. The effect of insonation on WBC dissolution treated with the combination of Abc plus rt-PA was lower compared with those treated with rt-PA. In this in vitro experiment, the additional effect of "diagnostic" US in combination with Abc was only present in WBC and less strong than with rt-PA. The results do not support the use of Abc for sonothrombolysis targeting both, fibrin-rich and platelet-rich clots. In contrast, US when combined with rt-PA increases dissolution in both, WBC and PRC as well.

Online information and support needs of women with advanced breast cancer: a qualitative analysis.

PubMed

Kemp, Emma; Koczwara, Bogda; Butow, Phyllis; Turner, Jane; Girgis, Afaf; Schofield, Penelope; Hulbert-Williams, Nicholas; Levesque, Janelle; Spence, Danielle; Vatandoust, Sina; Kichenadasse, Ganessan; Roy, Amitesh; Sukumaran, Shawgi; Karapetis, Christos S; Richards, Caroline; Fitzgerald, Michael; Beatty, Lisa

2018-04-24

Women with advanced breast cancer (ABC) face significant adjustment challenges, yet few resources provide them with information and support, and attendance barriers can preclude access to face-to-face psychosocial support. This paper reports on two qualitative studies examining (i) whether information and support-seeking preferences of women with ABC could be addressed in an online intervention, and (ii) how an existing intervention for patients with early stage cancer could be adapted for women with ABC. Women with ABC participated in telephone interviews about their information and support-seeking preferences (N = 21) and evaluated an online intervention focused on early-stage cancer (N = 15). Interviews were transcribed and underwent thematic analysis using the framework method to identify salient themes. Participants most commonly sought medical, lifestyle-related, and practical information/support; however, when presented with an online intervention, participants most commonly gave positive feedback on content on coping with emotional distress. Difficulty finding information and barriers to using common sources of information/support including health professionals, family and friends, and peers were reported; however, some women also reported not wanting information or support. All participants evaluating the existing intervention gave positive feedback on various components, with results suggesting an online intervention could be an effective means of providing information/support to women with ABC, given improved specificity/relevance to ABC and increased tailoring to individual circumstances and preferences. Adaptation of an existing online intervention for early stage cancer appears to be a promising avenue to address the information and support needs of women with ABC.

The ABC of Biofilm Drug Tolerance: the MerR-Like Regulator BrlR Is an Activator of ABC Transport Systems, with PA1874-77 Contributing to the Tolerance of Pseudomonas aeruginosa Biofilms to Tobramycin.

PubMed

Poudyal, Bandita; Sauer, Karin

2018-02-01

A hallmark of biofilms is their tolerance to killing by antimicrobial agents. In Pseudomonas aeruginosa , biofilm drug tolerance requires the c-di-GMP-responsive MerR transcriptional regulator BrlR. However, the mechanism by which BrlR mediates biofilm drug tolerance has not been elucidated. Here, we demonstrate that BrlR activates the expression of at least 7 ABC transport systems, including the PA1874-PA1875-PA1876-PA1877 (PA1874-77) operon, with chromatin immunoprecipitation and DNA binding assays confirming BrlR binding to the promoter region of PA1874-77. Insertional inactivation of the 7 ABC transport systems rendered P. aeruginosa PAO1 biofilms susceptible to tobramycin or norfloxacin. Susceptibility was linked to drug accumulation, with BrlR contributing to norfloxacin accumulation in a manner dependent on multidrug efflux pumps and the PA1874-77 ABC transport system. Inactivation of the respective ABC transport system, furthermore, eliminated the recalcitrance of biofilms to killing by tobramycin but not norfloxacin, indicating that drug accumulation is not linked to biofilm drug tolerance. Our findings indicate for the first time that BrlR, a MerR-type transcriptional activator, activates genes encoding several ABC transport systems, in addition to multiple multidrug efflux pump genes. Moreover, our data confirm a BrlR target contributing to drug tolerance, likely countering the prevailing dogma that biofilm tolerance arises from a multiplicity of factors. Copyright © 2018 American Society for Microbiology.

astroABC : An Approximate Bayesian Computation Sequential Monte Carlo sampler for cosmological parameter estimation

NASA Astrophysics Data System (ADS)

Jennings, E.; Madigan, M.

2017-04-01

Given the complexity of modern cosmological parameter inference where we are faced with non-Gaussian data and noise, correlated systematics and multi-probe correlated datasets,the Approximate Bayesian Computation (ABC) method is a promising alternative to traditional Markov Chain Monte Carlo approaches in the case where the Likelihood is intractable or unknown. The ABC method is called "Likelihood free" as it avoids explicit evaluation of the Likelihood by using a forward model simulation of the data which can include systematics. We introduce astroABC, an open source ABC Sequential Monte Carlo (SMC) sampler for parameter estimation. A key challenge in astrophysics is the efficient use of large multi-probe datasets to constrain high dimensional, possibly correlated parameter spaces. With this in mind astroABC allows for massive parallelization using MPI, a framework that handles spawning of processes across multiple nodes. A key new feature of astroABC is the ability to create MPI groups with different communicators, one for the sampler and several others for the forward model simulation, which speeds up sampling time considerably. For smaller jobs the Python multiprocessing option is also available. Other key features of this new sampler include: a Sequential Monte Carlo sampler; a method for iteratively adapting tolerance levels; local covariance estimate using scikit-learn's KDTree; modules for specifying optimal covariance matrix for a component-wise or multivariate normal perturbation kernel and a weighted covariance metric; restart files output frequently so an interrupted sampling run can be resumed at any iteration; output and restart files are backed up at every iteration; user defined distance metric and simulation methods; a module for specifying heterogeneous parameter priors including non-standard prior PDFs; a module for specifying a constant, linear, log or exponential tolerance level; well-documented examples and sample scripts. This code is hosted online at https://github.com/EliseJ/astroABC.

Recent Abacavir Use Increases Risk of Type 1 and Type 2 Myocardial Infarctions Among Adults With HIV.

PubMed

Elion, Richard A; Althoff, Keri N; Zhang, Jinbing; Moore, Richard D; Gange, Stephen J; Kitahata, Mari M; Crane, Heidi M; Drozd, Daniel R; Stein, James H; Klein, Marina B; Eron, Joseph J; Silverberg, Michael J; Mathews, William C; Justice, Amy C; Sterling, Timothy R; Rabkin, Charles S; Mayor, Angel M; Klein, Daniel B; Horberg, Michael A; Bosch, Ronald J; Eyawo, Oghenowede; Palella, Frank J

2018-05-01

There is persistent confusion as to whether abacavir (ABC) increases the risk of myocardial infarction (MI), and whether such risk differs by type 1 (T1MI) or 2 (T2MI) MI in adults with HIV. Incident MIs in North American Cohort Collaboration on Research and Design participants were identified from 2001 to 2013. Discrete time marginal structural models addressed channeling biases and time-dependent confounding to estimate crude hazard ratio (HR) and adjusted hazard ratio (aHR) and 95% confidence intervals; analyses were performed for T1MI and T2MI separately. A sensitivity analysis evaluated whether Framingham risk score (FRS) modified the effect of ABC on MI occurrence. Eight thousand two hundred sixty-five adults who initiated antiretroviral therapy contributed 29,077 person-years and 123 MI events (65 T1MI and 58 T2MI). Median follow-up time was 2.9 (interquartile range 1.4-5.1) years. ABC initiators were more likely to have a history of injection drug use, hepatitis C virus infection, hypertension, diabetes, impaired kidney function, hyperlipidemia, low (<200 cells/mm) CD4 counts, and a history of AIDS. The risk of the combined MI outcome was greater for persons who used ABC in the previous 6 months [aHR = 1.84 (1.17-2.91)]; and persisted for T1MI (aHR = 1.62 [1.01]) and T2MI [aHR = 2.11 (1.08-4.29)]. FRS did not modify the effect of ABC on MI (P = 0.14) and inclusion of FRS in the MSM did not diminish the effect of recent ABC use on the combined outcome. Recent ABC use was associated with MI after adjustment for known risk factors and for FRS. However, screening for T1MI risks may not identify all or even most persons at risk of ABC use-associated MIs.

An alternative physiological role for the EmhABC efflux pump in Pseudomonas fluorescens cLP6a

PubMed Central

2011-01-01

Background Efflux pumps belonging to the resistance-nodulation-division (RND) superfamily in bacteria are involved in antibiotic resistance and solvent tolerance but have an unknown physiological role. EmhABC, a RND-type efflux pump in Pseudomonas fluorescens strain cLP6a, extrudes hydrophobic antibiotics, dyes and polycyclic aromatic hydrocarbons including phenanthrene. The effects of physico-chemical factors such as temperature or antibiotics on the activity and expression of EmhABC were determined in order to deduce its physiological role(s) in strain cLP6a in comparison to the emhB disruptant strain, cLP6a-1. Results Efflux assays conducted with 14C-phenanthrene showed that EmhABC activity is affected by incubation temperature. Increased phenanthrene efflux was measured in cLP6a cells grown at 10°C and decreased efflux was observed at 35°C compared with cells grown at the optimum temperature of 28°C. Membrane fatty acids in cLP6a cells were substantially altered by changes in growth temperature and in the presence of tetracycline. Changed membrane fatty acids and increased membrane permeability were associated with ~30-fold increased expression of emhABC in cLP6a cells grown at 35°C, and with increased extracellular free fatty acids. Growth of P. fluorescens cLP6a at supra-optimal temperature was enhanced by the presence of EmhABC compared to strain cLP6a-1. Conclusions Combined, these observations suggest that the EmhABC efflux pump may be involved in the management of membrane stress effects such as those due to unfavourable incubation temperatures. Efflux of fatty acids replaced as a result of membrane damage or phospholipid turnover may be the primary physiological role of the EmhABC efflux pump in P. fluorescens cLP6a. PMID:22085438

Chemical composition of rainwater at Maldives Climate Observatory at Hanimaadhoo (MCOH)

NASA Astrophysics Data System (ADS)

Das, R.; Granat, L.; Leck, C.; Praveen, P. S.; Rodhe, H.

2010-07-01

Water soluble inorganic components in rain deposited at the Maldives Climate Observatory Hanimaadhoo (MCOH) were examined to determine seasonality and possible source regions. The study, which is part of the international Atmospheric Brown Cloud (ABC) project, covers the period June 2005 to December 2007. Air mass trajectories were used to separate the data into situations with transport of air from the Asian continent during winter (December-April) and those with southerly flow from the Indian Ocean during the monsoon season (June-September). The concentrations of nss-SO42-, NH4+, NO3- and H+ were more than a factor of 4 higher in winter than during the monsoon season. This shows a pronounced influence of continental pollutants during winter. The average rainwater pH was significantly lower in winter (4.7) than during the monsoon (6.0). The lower pH in winter is probably due to a more rapid decrease in the alkaline components than in the acidifying components as air is transported southwards over the Indian Ocean. The moderately high loadings of nss-SO42- during the monsoon season, supported by our measurements of Methane sulphonate (MSA), indicate that Dimethyl sulphide (DMS) is likely to contribute substantially to the nss-SO42- concentration during this season. The origin of the high concentration of nss-Ca2+ during the monsoon season - a factor of 4 to 7 higher than during the winter situations with trajectories from the continent - is unclear. We discuss various possibilities including long-range transport from the African or Australian continents, calcareous plankton debris and exopolymer gels emitted from the ocean surface. The occurrence of NO3- and NH4+ during the monsoon season suggests emissions from the ocean surface. Part of the NO3- could also be associated with lightning over the ocean. Despite the fact that the concentrations of nss-SO42-, NO3-, and NH4+ were highest during the winter season their wet deposition was at least as high during the monsoon season reflecting the larger amount of rainfall in this season. The annual wet deposition of these components was comparable to that observed in the eastern US and in India but substantially higher than what has been observed on Amsterdam Island in the Southern Indian Ocean.

50 CFR Table 2a to Part 660... - 2012, and beyond, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in...

Code of Federal Regulations, 2012 CFR

2012-10-01

... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false 2012, and beyond, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in metric tons) 2a Table 2a to Part 660, Subpart... Table 2a to Part 660, Subpart C—2012, and beyond, Specifications of OFL, ABC, ACL, ACT and Fishery...

50 CFR Table 2a to Part 660... - 2014, and Beyond, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in...

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false 2014, and Beyond, Specifications of OFL, ABC, ACL, ACT and Fishery Harvest guidelines (weights in metric tons) 2a Table 2a to Part 660, Subpart... Table 2a to Part 660, Subpart C—2014, and Beyond, Specifications of OFL, ABC, ACL, ACT and Fishery...

Psychological differentiation in Nigerian children.

PubMed

Jegede, R

1976-11-01

The human figure drawings of 646 male and female Nigerian primary school children were analyzed with the use of Witkin's Articulation of Body Concept (ABC) scale. There was a significant association between age and ABC scores for the Ss as a group. The correlation between age and ABC scores was significant with male Ss and almost so with female Ss. These findings are on the whole consistent with the results of previous research conducted in different sociocultural settings.

Electronic and magnetic properties of bare armchair BC2N nanoribbons

NASA Astrophysics Data System (ADS)

Li, Hong; Xiao, Xiang; Tie, Jun; Lu, Jing

2017-03-01

We present the electronic and magnetic properties of bare armchair BC2N nanoribbons (ABC2NNRs) in the view of density functional calculations. We consider three types of edge terminations with a width of 0.75 2.10 nm. All the investigated ribbons exhibit magnetic ground states with the magnetic moments mainly located on the edge C atoms. Room temperature accessible magnetic stabilities are obtained for ABC2NNRs with NC-NC and NC-BC edge alignments. We find the ABC2NNRs have various electronic structures, where half-metal, metal, and semiconductor are all acquired depend on the edge alignment and magnetic coupling state. The results show the ABC2NNRs can be a promising candidate material in nanoelectronics and nanospintronics.

Unicameral and aneurysmal bone cysts.

PubMed

Campanacci, M; Capanna, R; Picci, P

1986-03-01

One hundred and seventy-eight cases of unicameral bone cysts (UBC) treated with curettage and bone grafting were compared to 141 cases treated with cortisone injections. The end results were comparable in the two groups. Local recurrence risk factors in the surgical group were active cyst and previous operations. In the other group they were multilocation of the cyst, active cyst, and size of cyst. A new radiographic classification of aneurysmal bone cyst (ABC) is proposed in a report of 198 cases of ABC. The treatment of choice in ABC is surgical and the type (curettage, curettage plus phenole or cryosurgery, resection or hemiresection) is selected on the basis of the radiographic aspect and the rate of growth of the cyst. Radiotherapy is only indicated in inoperable ABC cases.

The Ascension Island boundary layer in the remote southeast Atlantic is often smoky

DOE PAGES

Zuidema, Paquita; Sedlacek III, Arthur J.; Flynn, Connor; ...

2018-03-31

Observations from June through October, 2016, from a surface-based ARM Mobile Facility deployment on Ascension Island (8°S, 14.5°W) indicate that refractory black carbon (rBC) is almost always present within the boundary layer. rBC mass concentrations, light absorption coefficients, and cloud condensation nuclei concentrations vary in concert and synoptically, peaking in August. Light absorption coefficients at three visible wavelengths as a function of rBC mass indirectly indicate the presence of other light-absorbing aerosols (e.g., brown carbon), most pronounced in June. The single-scattering-albedo increases systematically from August to October in both 2016 and 2017, with monthly-means of 0.78±0.02 (August), 0.81±0.03 (September) andmore » 0.83±0.03 (October) at the green wavelength. Boundary-layer aerosol loadings are only loosely correlated with total aerosol optical depth, with smoke more likely to be present in the boundary layer earlier in the biomass-burning season, evolving to smoke predominantly present above the cloud layers in September-October, typically resting upon the cloud-top inversion. The time period with the campaign-maximum near-surface light absorption and column aerosol optical depth, on 13-16 August of 2016, is investigated further. Also, backtrajectories indicate more direct boundary layer transport westward from the African continent is central to explaining the elevated surface aerosol loadings.« less

The Ascension Island boundary layer in the remote southeast Atlantic is often smoky

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zuidema, Paquita; Sedlacek III, Arthur J.; Flynn, Connor

Observations from June through October, 2016, from a surface-based ARM Mobile Facility deployment on Ascension Island (8°S, 14.5°W) indicate that refractory black carbon (rBC) is almost always present within the boundary layer. rBC mass concentrations, light absorption coefficients, and cloud condensation nuclei concentrations vary in concert and synoptically, peaking in August. Light absorption coefficients at three visible wavelengths as a function of rBC mass indirectly indicate the presence of other light-absorbing aerosols (e.g., brown carbon), most pronounced in June. The single-scattering-albedo increases systematically from August to October in both 2016 and 2017, with monthly-means of 0.78±0.02 (August), 0.81±0.03 (September) andmore » 0.83±0.03 (October) at the green wavelength. Boundary-layer aerosol loadings are only loosely correlated with total aerosol optical depth, with smoke more likely to be present in the boundary layer earlier in the biomass-burning season, evolving to smoke predominantly present above the cloud layers in September-October, typically resting upon the cloud-top inversion. The time period with the campaign-maximum near-surface light absorption and column aerosol optical depth, on 13-16 August of 2016, is investigated further. Also, backtrajectories indicate more direct boundary layer transport westward from the African continent is central to explaining the elevated surface aerosol loadings.« less

Uniform Atmospheric Retrievals of Ultracool Late-T and Early-Y dwarfs

NASA Astrophysics Data System (ADS)

Garland, Ryan; Irwin, Patrick

2018-01-01

A significant number of ultracool (<600K) extrasolar objects have been unearthed in the past decade thanks to wide-field surveys such as WISE. These objects present a perfect testbed for examining the evolution of atmospheric structure as we transition from typically hot extrasolar temperatures to the temperatures found within our Solar System.By examining these types of objects with a uniform retrieval method, we hope to elucidate any trends and (dis)similarities found in atmospheric parameters, such as chemical abundances, temperature-pressure profile, and cloud structure, for a sample of 7 ultracool brown dwarfs as we transition from hotter (~700K) to colder objects (~450K).We perform atmospheric retrievals on two late-T and five early-Y dwarfs. We use the NEMESIS atmospheric retrieval code coupled to a Nested Sampling algorithm, along with a standard uniform model for all of our retrievals. The uniform model assumes the atmosphere is described by a gray radiative-convective temperature profile, (optionally) a self-consistent Mie scattering cloud, and a number of relevant gases. We first verify our methods by comparing it to a benchmark retrieval for Gliese 570D, which is found to be consistent. Furthermore, we present the retrieved gaseous composition, temperature structure, spectroscopic mass and radius, cloud structure and the trends associated with decreasing temperature found in this small sample of objects.

Manam Volcano, Papua New Guinea

NASA Image and Video Library

2017-12-08

NASA image acquired June 16, 2010. Papua New Guinea’s Manam Volcano released a thin, faint plume on June 16, 2010, as clouds clustered at the volcano’s summit. The Advanced Land Imager (ALI) on NASA’s Earth Observing-1 (EO-1) satellite took this picture the same day. Rivulets of brown rock interrupt the carpet of green vegetation on the volcano’s slopes. Opaque white clouds partially obscure the satellite’s view of Manam. The clouds may result from water vapor from the volcano, but may also have formed independent of volcanic activity. The volcanic plume appears as a thin, blue-gray veil extending toward the northwest over the Bismarck Sea. Located 13 kilometers (8 miles) off the coast of mainland Papua New Guinea, Manam forms an island 10 kilometers (6 miles) wide. It is a stratovolcano. The volcano has two summit craters, and although both are active, most historical eruptions have arisen from the southern crater. NASA Earth Observatory image created by Jesse Allen, using EO-1 ALI data provided courtesy of the NASA EO-1 team. Caption by Michon Scott. Instrument: EO-1 - ALI To view the full image go to: earthobservatory.nasa.gov/NaturalHazards/view.php?id=4430... NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

Ash plume from Eyjafjallajokull Volcano, Iceland May 6th View [Detail

NASA Image and Video Library

2017-12-08

NASA satellite image acquired May 6, 2010 at 11 :55 UTC To view the full view go to: www.nasa.gov/topics/earth/features/iceland-volcano-plume.... NASA Satellite Sees a Darker Ash Plume From Iceland Volcano NASA's Terra satellite flew over the Eyjafjallajokull Volcano, Iceland, on May 6 at 11:55 UTC (7:55 a.m. EDT). The Moderate Resolution Imaging Spectroradiometer instrument known as MODIS that flies onboard Terra, captured a visible image of the ash plume. The plume was blowing east then southeast over the Northern Atlantic. The satellite image shows that the plume is at a lower level in the atmosphere than the clouds that lie to its east, as the brown plume appears to slide underneath the white clouds. Satellite: Terra NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team To learn more about MODIS go to: rapidfire.sci.gsfc.nasa.gov/gallery/?latest NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

Ash plume from Eyjafjallajokull Volcano, Iceland May 6th View

NASA Image and Video Library

2010-05-06

NASA satellite image acquired May 6, 2010 at 11 :55 UTC To view a detail of this image go to: www.flickr.com/photos/gsfc/4583711511/ NASA Satellite Sees a Darker Ash Plume From Iceland Volcano NASA's Terra satellite flew over the Eyjafjallajokull Volcano, Iceland, on May 6 at 11:55 UTC (7:55 a.m. EDT). The Moderate Resolution Imaging Spectroradiometer instrument known as MODIS that flies onboard Terra, captured a visible image of the ash plume. The plume was blowing east then southeast over the Northern Atlantic. The satellite image shows that the plume is at a lower level in the atmosphere than the clouds that lie to its east, as the brown plume appears to slide underneath the white clouds. Satellite: Terra NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team To learn more about MODIS go to: www.nasa.gov/topics/earth/features/iceland-volcano-plume.... NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

Methane, carbon monoxide, and ammonia in brown dwarfs and self-luminous giant planets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zahnle, Kevin J.; Marley, Mark S., E-mail: Kevin.J.Zahnle@NASA.gov, E-mail: Mark.S.Marley@NASA.gov

2014-12-10

We address disequilibrium abundances of some simple molecules in the atmospheres of solar composition brown dwarfs and self-luminous extrasolar giant planets using a kinetics-based one-dimensional atmospheric chemistry model. Our approach is to use the full kinetics model to survey the parameter space with effective temperatures between 500 K and 1100 K. In all of these worlds, equilibrium chemistry favors CH{sub 4} over CO in the parts of the atmosphere that can be seen from Earth, but in most disequilibrium favors CO. The small surface gravity of a planet strongly discriminates against CH{sub 4} when compared to an otherwise comparable brownmore » dwarf. If vertical mixing is like Jupiter's, the transition from methane to CO occurs at 500 K in a planet. Sluggish vertical mixing can raise this to 600 K, but clouds or more vigorous vertical mixing could lower this to 400 K. The comparable thresholds in brown dwarfs are 1100 ± 100 K. Ammonia is also sensitive to gravity, but, unlike CH{sub 4}/CO, the NH{sub 3}/N{sub 2} ratio is insensitive to mixing, which makes NH{sub 3} a potential proxy for gravity. HCN may become interesting in high-gravity brown dwarfs with very strong vertical mixing. Detailed analysis of the CO-CH{sub 4} reaction network reveals that the bottleneck to CO hydrogenation goes through methanol, in partial agreement with previous work. Simple, easy to use quenching relations are derived by fitting to the complete chemistry of the full ensemble of models. These relations are valid for determining CO, CH{sub 4}, NH{sub 3}, HCN, and CO{sub 2} abundances in the range of self-luminous worlds we have studied, but may not apply if atmospheres are strongly heated at high altitudes by processes not considered here (e.g., wave breaking).« less

Time-varying trends of global vegetation activity

NASA Astrophysics Data System (ADS)

Pan, N.; Feng, X.; Fu, B.

2016-12-01

Vegetation plays an important role in regulating the energy change, water cycle and biochemical cycle in terrestrial ecosystems. Monitoring the dynamics of vegetation activity and understanding their driving factors have been an important issue in global change research. Normalized Difference Vegetation Index (NDVI), an indicator of vegetation activity, has been widely used in investigating vegetation changes at regional and global scales. Most studies utilized linear regression or piecewise linear regression approaches to obtain an averaged changing rate over a certain time span, with an implicit assumption that the trend didn't change over time during that period. However, no evidence shows that this assumption is right for the non-linear and non-stationary NDVI time series. In this study, we adopted the multidimensional ensemble empirical mode decomposition (MEEMD) method to extract the time-varying trends of NDVI from original signals without any a priori assumption of their functional form. Our results show that vegetation trends are spatially and temporally non-uniform during 1982-2013. Most vegetated area exhibited greening trends in the 1980s. Nevertheless, the area with greening trends decreased over time since the early 1990s, and the greening trends have stalled or even reversed in many places. Regions with browning trends were mainly located in southern low latitudes in the 1980s, whose area decreased before the middle 1990s and then increased at an accelerated rate. The greening-to-browning reversals were widespread across all continents except Oceania (43% of the vegetated areas), most of which happened after the middle 1990s. In contrast, the browning-to-greening reversals occurred in smaller area and earlier time. The area with monotonic greening and browning trends accounted for 33% and 5% of the vegetated area, respectively. By performing partial correlation analyses between NDVI and climatic elements (temperature, precipitation and cloud cover) and analyzing the MEEMD-extracted trends of these climatic elements, we discussed possible driving factors of the time-varying trends of NDVI in several specific regions where trend reversals occurred.

A statistical analysis of seeds and other high-contrast exoplanet surveys: massive planets or low-mass brown dwarfs?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brandt, Timothy D.; Spiegel, David S.; McElwain, Michael W.

2014-10-20

We conduct a statistical analysis of a combined sample of direct imaging data, totalling nearly 250 stars. The stars cover a wide range of ages and spectral types, and include five detections (κ And b, two ∼60 M {sub J} brown dwarf companions in the Pleiades, PZ Tel B, and CD–35 2722B). For some analyses we add a currently unpublished set of SEEDS observations, including the detections GJ 504b and GJ 758B. We conduct a uniform, Bayesian analysis of all stellar ages using both membership in a kinematic moving group and activity/rotation age indicators. We then present a new statisticalmore » method for computing the likelihood of a substellar distribution function. By performing most of the integrals analytically, we achieve an enormous speedup over brute-force Monte Carlo. We use this method to place upper limits on the maximum semimajor axis of the distribution function derived from radial-velocity planets, finding model-dependent values of ∼30-100 AU. Finally, we model the entire substellar sample, from massive brown dwarfs to a theoretically motivated cutoff at ∼5 M {sub J}, with a single power-law distribution. We find that p(M, a)∝M {sup –0.65} {sup ±} {sup 0.60} a {sup –0.85} {sup ±} {sup 0.39} (1σ errors) provides an adequate fit to our data, with 1.0%-3.1% (68% confidence) of stars hosting 5-70 M {sub J} companions between 10 and 100 AU. This suggests that many of the directly imaged exoplanets known, including most (if not all) of the low-mass companions in our sample, formed by fragmentation in a cloud or disk, and represent the low-mass tail of the brown dwarfs.« less

SatCam: A mobile application for coordinated ground/satellite observation of clouds and validation of satellite-derived cloud mask products.

NASA Astrophysics Data System (ADS)

Gumley, L.; Parker, D.; Flynn, B.; Holz, R.; Marais, W.

2011-12-01

SatCam is an application for iOS devices that allows users to collect observations of local cloud and surface conditions in coordination with an overpass of the Terra, Aqua, or NPP satellites. SatCam allows users to acquire images of sky conditions and ground conditions at their location anywhere in the world using the built-in iPhone or iPod Touch camera at the same time that the satellite is passing overhead and viewing their location. Immediately after the sky and ground observations are acquired, the application asks the user to rate the level of cloudiness in the sky (Completely Clear, Mostly Clear, Partly Cloudy, Overcast). For the ground observation, the user selects their assessment of the surface conditions (Urban, Green Vegetation, Brown Vegetation, Desert, Snow, Water). The sky condition and surface condition selections are stored along with the date, time, and geographic location for the images, and the images are uploaded to a central server. When the MODIS (Terra and Aqua) or VIIRS (NPP) imagery acquired over the user location becomes available, a MODIS or VIIRS true color image centered at the user's location is delivered back to the SatCam application on the user's iOS device. SSEC also proposes to develop a community driven SatCam website where users can share their observations and assessments of satellite cloud products in a collaborative environment. SSEC is developing a server side data analysis system to ingest the SatCam user observations, apply quality control, analyze the sky images for cloud cover, and collocate the observations with MODIS and VIIRS satellite products (e.g., cloud mask). For each observation that is collocated with a satellite observation, the server will determine whether the user scored a "hit", meaning their sky observation and sky assessment matched the automated cloud mask obtained from the satellite observation. The hit rate will be an objective assessment of the accuracy of the user's sky observations. Users with high hit rates will be identified automatically and their observations will be used globally to evaluate the performance of the MODIS cloud mask algorithm for Terra and Aqua and the VIIRS cloud mask algorithm for NPP. The user's assessment of the ground conditions will also be used to evaluate the cloud mask accuracy in selecting the correct surface type at the user's location, which is an important element in the decision path used internally by the cloud mask algorithm. This presentation will describe the SatCam application, how it is used, and show examples of SatCam observations.

Neuronal glycosylation differentials in normal, injured and chondroitinase-treated environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kilcoyne, Michelle; Sharma, Shashank; McDevitt, Niamh

2012-04-13

Highlights: Black-Right-Pointing-Pointer Carbohydrates are important in the CNS and ChABC has been used for spinal cord injury (SCI) treatment. Black-Right-Pointing-Pointer Neuronal glycosylation in injury and after ChABC treatment is unknown. Black-Right-Pointing-Pointer In silico mining verified that glyco-related genes were differentially regulated after SCI. Black-Right-Pointing-Pointer In vitro model system revealed abnormal sialylation in an injured environment. Black-Right-Pointing-Pointer The model indicated a return to normal neuronal glycosylation after ChABC treatment. -- Abstract: Glycosylation is found ubiquitously throughout the central nervous system (CNS). Chondroitin sulphate proteoglycans (CSPGs) are a group of molecules heavily substituted with glycosaminoglycans (GAGs) and are found in the extracellularmore » matrix (ECM) and cell surfaces. Upon CNS injury, a glial scar is formed, which is inhibitory for axon regeneration. Several CSPGs are up-regulated within the glial scar, including NG2, and these CSPGs are key inhibitory molecules of axonal regeneration. Treatment with chondroitinase ABC (ChABC) can neutralise the inhibitory nature of NG2. A gene expression dataset was mined in silico to verify differentially regulated glycosylation-related genes in neurons after spinal cord injury and identify potential targets for further investigation. To establish the glycosylation differential of neurons that grow in a healthy, inhibitory and ChABC-treated environment, we established an indirect co-culture system where PC12 neurons were grown with primary astrocytes, Neu7 astrocytes (which overexpress NG2) and Neu7 astrocytes treated with ChABC. After 1, 4 and 8 days culture, lectin cytochemistry of the neurons was performed using five fluorescently-labelled lectins (ECA MAA, PNA, SNA-I and WFA). Usually {alpha}-(2,6)-linked sialylation scarcely occurs in the CNS but this motif was observed on the neurons in the injured environment only at day 8. Treatment with ChABC was successful in returning neuronal glycosylation to normal conditions at all timepoints for MAA, PNA and SNA-I staining, and by day 8 in the case of WFA. This study demonstrated neuronal cell surface glycosylation changes in an inhibitory environment and indicated a return to normal glycosylation after treatment with ChABC, which may be promising for identifying potential therapies for neuronal regeneration strategies.« less

Drought in Southeastern United States

NASA Technical Reports Server (NTRS)

2007-01-01

May 2007 was a record-setting month in Georgia. Typically a dry month in this southern state, May 2007 was exceptionally so, with many locations setting record-low rainfall records and some receiving no rain at all, said state climatologist David Emory Stooksbury on GeorgiaDrought.org. The lack of rain slowed plant growth, as shown in this vegetation index image. The Moderate Resolution Imaging Spectroradiometer (MODIS) on NASA's Terra satellite collected the data used to make this image between May 9 and May 24, 2007. The image shows vegetation conditions compared to average conditions observed from 2000 through 2006. Areas in which plants are more sparse or are growing more slowly than average are brown, while better-than-average growth is green. Georgia and its neighbors (South Carolina, Alabama, and Florida) are all brown, an indication that the lack of rainfall is suppressing plant growth. The gray area in southern Georgia and northern Florida shows where MODIS could not collect valid vegetation measurements, either because of clouds or smoke. In this case, the area corresponds with land that burned during this period and was probably masked by smoke. NASA image created by Jesse Allen, Earth Observatory, using data provided by Inbal Reshef, Global Agricultural Monitoring Project.

Identifying wide, cold planets within 8pc

NASA Astrophysics Data System (ADS)

Deacon, Niall; Kraus, Adam; Crossfield, Ian

2014-12-01

Direct imaging exoplanet studies have recently unveiled a previously-unexpected population of massive planets (up to 15 M_Jup) in wide orbits (>100AU). Although most of these discoveries have been around younger stars and have been of similar temperatures to field brown dwarfs, one object (WD 0806-661B), is the coldest planet known outside our solar system. We propose a survey of all stars and brown dwarfs within 8pc to identify massive planetary companions in the 150-1500AU separation range. We will 1) Measure the fraction of wide planetary mass companions to stars in the Solar neighbourhood. 2) Identify all planets within 8 parsecs with masses above 8 Jupiter masses in our chosen projected separation range with lower mass limits for closer and younger stars. 3) Identify approximately 8 planets, four of which will have temperatures below 300K making them ideal targets to study water clouds in cold atmospheres with both JWST and the next generation of ground-based extremely large telescopes. Our survey will be the most complete survey for wide planets to-date and will provide both a measurement of the wide planet population and a legacy of cold, well constrained targets for future observatories.

Extremely Low Mass: The Circumstellar Envelope of a Potential Proto-Brown Dwarf

NASA Technical Reports Server (NTRS)

Wiseman, Jennifer

2011-01-01

What is the environment for planet formation around extremely low mass stars? Is the environment around brown dwarfs and extremely low mass stars conducive and sufficiently massive for planet production? The determining conditions may be set very early in the process of the host object's formation. IRAS 16253-2429, the source of the Wasp-Waist Nebula seen in Spitzer IRAC images, is an isolated, very low luminosity ("VeLLO") Class 0 protostar in the nearby rho Ophiuchi cloud. We present VLA ammonia mapping observations of the dense gas envelope feeding the central core accreting system. We find a flattened envelope perpendicular to the outflow axis, and gas cavities that appear to cradle the outflow lobes as though carved out by the flow and associated (apparently precessing) jet, indicating environmental disruption. Based on the NH3 (1,1) and (2,2) emission distribution, we derive the mass, velocity fields and temperature distribution for the envelope. We discuss the combined evidence for this source to be one of the youngest and lowest mass sources in formation yet known, and discuss the ramifications for planet formation potential in this extremely low mass system.

Effect of body temperature on chondroitinase ABC's ability to cleave chondroitin sulfate glycosaminoglycans.

PubMed

Tester, Nicole J; Plaas, Anna H; Howland, Dena R

2007-04-01

Chondroitinase ABC (Ch'ase ABC) is a bacterial lyase that degrades chondroitin sulfate (CS), dermatan sulfate, and hyaluronan glycosaminoglycans (GAGs). This enzyme has received significant attention as a potential therapy for promoting central nervous system and peripheral nervous system repair based on its degradation of CS GAGs. Determination of the stability of Ch'ase ABC activity at temperatures equivalent to normal (37 degrees C) and elevated (39 degrees C) body temperatures is important for optimizing its clinical usage. We report here data obtained from examining enzymatic activity at these temperatures across nine lots of commercially available protease-free Ch'ase ABC. CS GAG degrading activity was assayed by using 1) immunohistochemical detection of unsaturated disaccharide stubs generated by digestion of proteoglycans in tissue sections and 2) fluorophore-assisted carbohydrate electrophoresis (FACE) and/or high-performance liquid chromatography (HPLC) to separate and quantify unsaturated disaccharide digestion products. Our results indicate that there is a significant effect of lot and time on enzymatic thermostability. Average enzymatic activity is significantly decreased at 1 and 3 days at 39 degrees C and 37 degrees C, respectively. Furthermore, the average activity seen after 1 day was significantly different between the two temperatures. Addition of bovine serum albumin as a stabilizer significantly preserved enzymatic activity at 1 day, but not 3 days, at 39 degrees C. These results show that the CS GAG degrading activity of Ch'ase ABC is significantly decreased with incubation at body temperature over time and that all lots do not show equal thermostability. These findings are important for the design and interpretation of experimental and potential clinical studies involving Ch'ase ABC. (c) 2007 Wiley-Liss, Inc.

ATP and AMP Mutually Influence Their Interaction with the ATP-binding Cassette (ABC) Adenylate Kinase Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) at Separate Binding Sites*

PubMed Central

Randak, Christoph O.; Dong, Qian; Ver Heul, Amanda R.; Elcock, Adrian H.; Welsh, Michael J.

2013-01-01

Cystic fibrosis transmembrane conductance regulator (CFTR) is an anion channel in the ATP-binding cassette (ABC) transporter protein family. In the presence of ATP and physiologically relevant concentrations of AMP, CFTR exhibits adenylate kinase activity (ATP + AMP ⇆ 2 ADP). Previous studies suggested that the interaction of nucleotide triphosphate with CFTR at ATP-binding site 2 is required for this activity. Two other ABC proteins, Rad50 and a structural maintenance of chromosome protein, also have adenylate kinase activity. All three ABC adenylate kinases bind and hydrolyze ATP in the absence of other nucleotides. However, little is known about how an ABC adenylate kinase interacts with ATP and AMP when both are present. Based on data from non-ABC adenylate kinases, we hypothesized that ATP and AMP mutually influence their interaction with CFTR at separate binding sites. We further hypothesized that only one of the two CFTR ATP-binding sites is involved in the adenylate kinase reaction. We found that 8-azidoadenosine 5′-triphosphate (8-N3-ATP) and 8-azidoadenosine 5′-monophosphate (8-N3-AMP) photolabeled separate sites in CFTR. Labeling of the AMP-binding site with 8-N3-AMP required the presence of ATP. Conversely, AMP enhanced photolabeling with 8-N3-ATP at ATP-binding site 2. The adenylate kinase active center probe P1,P5-di(adenosine-5′) pentaphosphate interacted simultaneously with an AMP-binding site and ATP-binding site 2. These results show that ATP and AMP interact with separate binding sites but mutually influence their interaction with the ABC adenylate kinase CFTR. They further indicate that the active center of the adenylate kinase comprises ATP-binding site 2. PMID:23921386

Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides

PubMed Central

2011-01-01

Background Vinyl chloride is a widespread groundwater pollutant and Group 1 carcinogen. A previous comparative genomic analysis revealed that the vinyl chloride reductase operon, vcrABC, of Dehalococcoides sp. strain VS is embedded in a horizontally-acquired genomic island that integrated at the single-copy tmRNA gene, ssrA. Results We targeted conserved positions in available genomic islands to amplify and sequence four additional vcrABC -containing genomic islands from previously-unsequenced vinyl chloride respiring Dehalococcoides enrichments. We identified a total of 31 ssrA-specific genomic islands from Dehalococcoides genomic data, accounting for 47 reductive dehalogenase homologous genes and many other non-core genes. Sixteen of these genomic islands contain a syntenic module of integration-associated genes located adjacent to the predicted site of integration, and among these islands, eight contain vcrABC as genetic 'cargo'. These eight vcrABC -containing genomic islands are syntenic across their ~12 kbp length, but have two phylogenetically discordant segments that unambiguously differentiate the integration module from the vcrABC cargo. Using available Dehalococcoides phylogenomic data we estimate that these ssrA-specific genomic islands are at least as old as the Dehalococcoides group itself, which in turn is much older than human civilization. Conclusions The vcrABC -containing genomic islands are a recently-acquired subset of a diverse collection of ssrA-specific mobile elements that are a major contributor to strain-level diversity in Dehalococcoides, and may have been throughout its evolution. The high similarity between vcrABC sequences is quantitatively consistent with recent horizontal acquisition driven by ~100 years of industrial pollution with chlorinated ethenes. PMID:21635780

Systemic treatment in advanced biliary cancers: A multicenter Australian analysis and review.

PubMed

Brungs, Daniel; Aghmesheh, Morteza; Sjoquist, Katrin; Goldstein, David

2017-10-01

While first-line palliative chemotherapy (CT1) improves survival and quality of life in advanced biliary cancer (ABC), there is no randomized evidence to support second-line chemotherapy (CT2) in ABC. We aim to explore to role of CT2 in ABC. We performed a retrospective review of all patients who received one or more lines of chemotherapy for ABC at four Australian cancer centers between 2008 and 2011. A Cox proportional hazard model was developed to determine the impact of clinicopathologic variables on overall survival (OS) from time of progression on CT1. We identified 73 patients who received palliative chemotherapy for ABC. Twenty-five patients (34%) received two or more lines of chemotherapy. Patients with a preserved performance status on progression on first-line chemotherapy (CT1) were more likely to receive second-line chemotherapy (CT2) (P < 0.001). Disease control rate with CT2 was 36%, and mean progression-free survival was 3.2 months (95% confidence interval 1.5-4.9 months). The following variables were significant in the univariate analysis of OS from time of progression on CT1: lines of chemotherapy (P = 0.0001), Eastern Cooperative Oncology Group performance status at progression on CT1 (P < 0.0001) and disease control with CT1 (P = 0.027). Lines of chemotherapy received and performance status remained significant in the multivariate analysis for OS from progression on CT1. Second-line chemotherapy is feasible in a subset of patients with ABC. Even after accounting for confounding variables, CT2 appears to increase OS in ABC, although we are unable to exclude other unmeasured factors such as tumor biology. These findings warrant further evaluation with prospective trials. © 2016 John Wiley & Sons Australia, Ltd.

[Simple evaluation of numbers of asbestos bodies in bronchoalveolar lavage fluid under light microscopy: analysis of 35 pulmonary nodular lesions].

PubMed

Kawahara, Kunimitsu; Kawasumi, Hiromi; Nagano, Teruaki; Sasada, Shinji; Okamoto, Norio

2008-04-01

More than 1 asbestos body (AB) per ml of bronchoalveolar lavage fluid (BALF) under light microscopy was defined as AB positive (ABP) and suggests an occupational asbestos exposure. We microscopically evaluated the AB number per one ml of BALF, which we defined as the AB concentration (ABC), using bronchoalveolar lavage (BAL) cytocentrifuge slides obtained from 35 patients having pulmonary nodular lesions (20 carcinoma and 15 nonneoplastic disease) and examined the correlation between ABC and clinicopathological data including findings on Helical computed tomography scan (HCTS) and occupational history of asbestos exposure (OHAE). BAL was performed by the standard technique without removing mucous with a gauze filter. AB was microscopically defined as a structure consisting of a core of transparent asbestos surrounded by an iron-protein coat. Twenty of 35 patients were ABP (ABP rate; 57%) and ABC ranged from 0 to 207.98/ml (mean ABC; 11.33/ml). Mean ABC was significantly higher in patients with OHAE (15.04/ml) compared to that in patients without OHAE (3.23/ml). Twenty-two of 35 patients (63%) lacked abnormality on HCTS and among these, 12 patients (55%) were ABP. In 20 pulmonary carcinoma patients, the ABP rate was 85% and ABC ranged from 0 to 31.1/ml (Mean ABC; 2.99/ml). The ABP rate of pulmonary carcinoma patients was 40% (8 patients) and among these, 5 patients (63%) did not show any abnormality on HCTS. In conclusion, our method was simple and useful and should be applied to patients with pulmonary nodular lesions and OHAE, even if there are no abnormalities on HCTS.

Molecular mechanisms underlying origin and diversification of the angiosperm flower.

PubMed

Theissen, Guenter; Melzer, Rainer

2007-09-01

Understanding the mode and mechanisms of the evolution of the angiosperm flower is a long-standing and central problem of evolutionary biology and botany. It has essentially remained unsolved, however. In contrast, considerable progress has recently been made in our understanding of the genetic basis of flower development in some extant model species. The knowledge that accumulated this way has been pulled together in two major hypotheses, termed the 'ABC model' and the 'floral quartet model'. These models explain how the identity of the different types of floral organs is specified during flower development by homeotic selector genes encoding transcription factors. We intend to explain how the 'ABC model' and the 'floral quartet model' are now guiding investigations that help to understand the origin and diversification of the angiosperm flower. Investigation of orthologues of class B and class C floral homeotic genes in gymnosperms suggest that bisexuality was one of the first innovations during the origin of the flower. The transition from dimer to tetramer formation of floral homeotic proteins after establishment of class E proteins may have increased cooperativity of DNA binding of the transcription factors controlling reproductive growth. That way, we hypothesize, better 'developmental switches' originated that facilitated the early evolution of the flower. Expression studies of ABC genes in basally diverging angiosperm lineages, monocots and basal eudicots suggest that the 'classical' ABC system known from core eudicots originated from a more fuzzy system with fading borders of gene expression and gradual transitions in organ identity, by sharpening of ABC gene expression domains and organ borders. Shifting boundaries of ABC gene expression may have contributed to the diversification of the angiosperm flower many times independently, as may have changes in interactions between ABC genes and their target genes.

Molecular Mechanisms Underlying Origin and Diversification of the Angiosperm Flower

PubMed Central

Theissen, Guenter; Melzer, Rainer

2007-01-01

Background Understanding the mode and mechanisms of the evolution of the angiosperm flower is a long-standing and central problem of evolutionary biology and botany. It has essentially remained unsolved, however. In contrast, considerable progress has recently been made in our understanding of the genetic basis of flower development in some extant model species. The knowledge that accumulated this way has been pulled together in two major hypotheses, termed the ‘ABC model’ and the ‘floral quartet model’. These models explain how the identity of the different types of floral organs is specified during flower development by homeotic selector genes encoding transcription factors. Scope We intend to explain how the ‘ABC model’ and the ‘floral quartet model’ are now guiding investigations that help to understand the origin and diversification of the angiosperm flower. Conclusions Investigation of orthologues of class B and class C floral homeotic genes in gymnosperms suggest that bisexuality was one of the first innovations during the origin of the flower. The transition from dimer to tetramer formation of floral homeotic proteins after establishment of class E proteins may have increased cooperativity of DNA binding of the transcription factors controlling reproductive growth. That way, we hypothesize, better ‘developmental switches’ originated that facilitated the early evolution of the flower. Expression studies of ABC genes in basally diverging angiosperm lineages, monocots and basal eudicots suggest that the ‘classical’ ABC system known from core eudicots originated from a more fuzzy system with fading borders of gene expression and gradual transitions in organ identity, by sharpening of ABC gene expression domains and organ borders. Shifting boundaries of ABC gene expression may have contributed to the diversification of the angiosperm flower many times independently, as may have changes in interactions between ABC genes and their target genes. PMID:17670752

Effects of a switch from tenofovir- to abacavir-based antiretroviral therapy, with or without atazanavir, on renal function.

PubMed

Guillemi, Silvia A; Ling, Sean H; Dahlby, Julia S; Yip, Benita; Zhang, Wendy; Hull, Mark W; Lima, Viviane Dias; Hogg, Robert S; Werb, Ronald; Montaner, Julio S; Harris, Marianne

2016-01-01

Tenofovir disoproxil fumarate (TDF)-associated renal dysfunction may abate when TDF is replaced with abacavir (ABC). The extent to which the third drug atazanavir contributes to renal dysfunction is unclear. A retrospective analysis was conducted on adults who had plasma viral load (pVL)<200 copies/mL for≥six months while receiving TDF/lamivudine (3TC) - or TDF/emtricitabine (FTC)-based antiretroviral therapy (ART), then switched to ABC/3TC while retaining the third drug in the ART regimen. CD4, pVL, creatinine, estimated glomerular filtration rate (eGFR), serum phosphorus, urine albumin to creatinine ratio and serum lipids were compared between pre-switch baseline and 3, 6 and 12 months after the switch to ABC. A total of 286 patients switched from TDF to ABC between 2004 and 2014: 232 (81%) male, median age 48 years (interquartile range (IQR) 42, 56). The third drug was atazanavir (± ritonavir) in 141 (49%) cases. The pVL was<50 copies/mL in 93 to 96% at all time points. Median serum creatinine was 93 µmol/L (IQR 80-111) at baseline and decreased to 88 µmol/L (IQR 78-98) at 12 months after the switch to ABC. Median eGFR increased from 74 (IQR 60-88) mL/min at baseline to 80 mL/min (IQR 69-89) at 12 months. Results were not significantly different between patients on atazanavir versus those on another third drug. Viral suppression was maintained among patients who switched from TDF/3TC or TDF/FTC to ABC/3TC. Serum creatinine and eGFR improved up to 12 months after switching to ABC/3TC, irrespective of whether or not patients were also receiving atazanavir±ritonavir.

Use of patch testing for the diagnosis of abacavir-related hypersensitivity reaction in HIV patients.

PubMed

Giorgini, S; Martinelli, C; Tognetti, L; Carocci, A; Giuntini, R; Mastronardi, V; Torricelli, F; Leoncini, F; Lotti, T

2011-01-01

The use of antiretroviral drug abacavir (ABC) has been often associated with cutaneous hypersensitivity reactions, the majority being severe. The present study discusses the issues of patch testing associated with pharmacogenetic screening in light of the development of abacavir hypersensitivity reactions (HSRs). The present authors classified 100 patients into three groups: 20 patients (group A) had experienced a hypersensitivity reaction when treated with highly active antiretroviral therapy (HAART) including ABC; 60 HIV-positive patients (group B) were receiving HAART scheme including ABC; 20 HIV-negative patients acted as control group (group C). Patients of group A and B were patch tested with ABC as such, then with an ABC extract diluted to 1 and 10% in petrolatum. Group C patients underwent patches with petrolatum only. A biopsy of the lesion was performed in those patients who showed a positive skin reaction. All patients had been tested for HLA-B5701. A correlation between positive ABC-patch testing and HLA-B5701 was found in 50% of patients enrolled in group A, while in group B and C, all patients tested negative for both genetic marker and ABC-patch testing. Histopathology findings confirmed a vigorous CD4+ and CD8+ cellular response that is compatible with HSR. Patch testing is a safe and sensitive method that can be used for to confirm or exclude any correlation between abacavir and hypersensitivity skin reactions in patients who have been previously treated with abacavir during HAART. Correlation between patch test, immunohistochimical, and genetic tests results shows that genetic testing increases the possibility to identify patients with a true reaction. © 2012 Wiley Periodicals, Inc.

Abacavir/Lamivudine Versus Tenofovir DF/Emtricitabine as Part of Combination Regimens for Initial Treatment of HIV: Final Results

PubMed Central

Tierney, Camlin; Collier, Ann C.; Daar, Eric S.; Mollan, Katie; Budhathoki, Chakra; Godfrey, Catherine; Jahed, Nasreen C.; Myers, Laurie; Katzenstein, David; Farajallah, Awny; Rooney, James F.; Ha, Belinda; Woodward, William C.; Feinberg, Judith; Tashima, Karen; Murphy, Robert L.; Fischl, Margaret A.

2011-01-01

(See the editorial commentary by Hull and Montaner, on pages 1154–6.) Background. AIDS Clinical Trials Group A5202 compared blinded abacavir/lamivudine (ABC/3TC) to tenofovir DF/emtricitabine (TDF/FTC) with efavirenz (EFV) or atazanavir/ritonavir (ATV/r) in human immunodeficiency virus (HIV)-infected treatment-naive patients, stratified by screening HIV RNA (< or ≥105 copies/mL). Due to higher virologic failure with ABC/3TC in the high HIV RNA stratum, blinded treatment was stopped in this group, but study follow-up continued for all patients. Methods. Primary endpoints were times to virologic failure, regimen modification, and safety event. Results. In the low HIV RNA stratum, time to virologic failure was similar for ABC/3TC vs TDF/FTC with ATV/r (hazard ratio [HR] 1.25, 95% confidence interval [CI] 0.76, 2.05) or EFV (HR 1.23, 95% CI 0.77, 1.96), with significantly shorter times to regimen modification for ABC/3TC with EFV or ATV/r and to safety events with EFV. Prior to stopping blinded treatment in the high stratum, higher virologic failure rates were seen with ABC/3TC with EFV (HR 2.46, 95% CI 1.20, 5.05) or ATV/r (HR 2.22, 95% CI 1.19, 4.14). Conclusions. In the low HIV RNA stratum, times to virologic failure for ABC/3TC or TDF/FTC were not different with EFV or ATV/r. In the high stratum, virologic failure rate was significantly higher for ABC/3TC than for TDF/FTC when given with either EFV or ATV/r. PMID:21917892